RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5669
(116 letters)
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate,
glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A
{Streptomyces antibioticus}
Length = 424
Score = 38.6 bits (90), Expect = 2e-04
Identities = 6/37 (16%), Positives = 12/37 (32%), Gaps = 2/37 (5%)
Query: 15 PQYKTNVQRLSTIFRSEPLHPLQKAIRSIEYVIAHRG 51
P + + R + A +E ++A G
Sbjct: 390 PGVAERLAAVRQEIREAG--GARAAADILEGILAEAG 424
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.4 bits (78), Expect = 0.005
Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 12/53 (22%)
Query: 9 QPACMSPQYKTNVQRLST---------IFRSEPLHPLQKAI---RSIEYVIAH 49
QP+ M+ Y RL + R +P L++A+ R + V+
Sbjct: 104 QPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID 156
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A
{Micromonospora echinospora}
Length = 402
Score = 33.5 bits (77), Expect = 0.007
Identities = 5/37 (13%), Positives = 11/37 (29%), Gaps = 2/37 (5%)
Query: 15 PQYKTNVQRLSTIFRSEPLHPLQKAIRSIEYVIAHRG 51
+ V+R+ S +A +E +
Sbjct: 367 SAVRERVRRMQRDILSSG--GPARAADEVEAYLGRVA 401
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance,
glycosylation, enzyme, macrolide, carbohydrate; HET: ERY
UDP; 1.7A {Streptomyces antibioticus}
Length = 430
Score = 32.5 bits (74), Expect = 0.021
Identities = 7/37 (18%), Positives = 14/37 (37%), Gaps = 2/37 (5%)
Query: 15 PQYKTNVQRLSTIFRSEPLHPLQKAIRSIEYVIAHRG 51
P+ ++R+ E ++A IE + R
Sbjct: 368 PEVARRLRRIQAEMAQEG--GTRRAADLIEAELPARH 402
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.8 bits (71), Expect = 0.023
Identities = 9/29 (31%), Positives = 15/29 (51%), Gaps = 7/29 (24%)
Query: 37 QKAIRSIE-----YVIAHRGAPHLKTKAT 60
++A++ ++ Y A AP L KAT
Sbjct: 19 KQALKKLQASLKLY--ADDSAPALAIKAT 45
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD,
enzyme, nucleotide binding,
sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo
sapiens}
Length = 170
Score = 29.1 bits (66), Expect = 0.20
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 15 PQYKTNVQRLSTIFR 29
P YK NV +LS I
Sbjct: 155 PSYKENVMKLSRIQH 169
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure
initiative, center for eukaryotic structural genomics;
HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB:
3iaa_A*
Length = 415
Score = 28.1 bits (63), Expect = 0.62
Identities = 6/34 (17%), Positives = 12/34 (35%), Gaps = 2/34 (5%)
Query: 15 PQYKTNVQRLSTIFRSEPLHPLQKAIRSIEYVIA 48
P V+ + R +A ++E +A
Sbjct: 382 PALLARVEAMRGHVRRAG--GAARAADAVEAYLA 413
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A
{Saccharopolyspora erythraea}
Length = 441
Score = 26.7 bits (59), Expect = 2.2
Identities = 8/39 (20%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 15 PQYKTNVQRLSTIFRSEPLHPLQKAIRSIEYVIAHRGAP 53
P ++ R+ +EP + + E + A R P
Sbjct: 404 PAHRAGAARMRDDMLAEP--SPAEVVGICEELAAGRREP 440
>3l12_A Putative glycerophosphoryl diester phosphodiester; struct
genomics, joint center for structural genomics, JCSG,
prote structure initiative; HET: MSE; 1.60A
{Silicibacter pomeroyi}
Length = 313
Score = 26.3 bits (58), Expect = 2.2
Identities = 8/28 (28%), Positives = 9/28 (32%), Gaps = 9/28 (32%)
Query: 28 FRSEPLHPLQKAIRSIEYVIAHRGAPHL 55
R P VI HRGA +
Sbjct: 11 LRGHPSVVR---------VIGHRGARGV 29
>3qvq_A Phosphodiesterase OLEI02445; structural genomics, PSI-biology,
midwest center for structu genomics, MCSG, alpha-beta
hydrolase, hydrolase; HET: MSE G3P; 1.60A {Oleispira
antarctica}
Length = 252
Score = 25.3 bits (56), Expect = 4.8
Identities = 6/10 (60%), Positives = 7/10 (70%)
Query: 46 VIAHRGAPHL 55
VIAHRG+
Sbjct: 12 VIAHRGSSGQ 21
>1zcc_A Glycerophosphodiester phosphodiesterase; NYSGXRC, agrobacterium
tumefaciens STR. C58, structural genomics; 2.50A
{Agrobacterium tumefaciens str} SCOP: c.1.18.3
Length = 248
Score = 25.3 bits (56), Expect = 5.4
Identities = 4/10 (40%), Positives = 7/10 (70%)
Query: 46 VIAHRGAPHL 55
+++HRGA
Sbjct: 4 IVSHRGANRF 13
>1ydy_A Glycerophosphoryl diester phosphodiesterase; structural genomics,
PSI, protein structu initiative; 1.70A {Escherichia
coli} SCOP: c.1.18.3 PDB: 1t8q_A
Length = 356
Score = 25.3 bits (55), Expect = 5.5
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 46 VIAHRGAP 53
VIAHRGA
Sbjct: 33 VIAHRGAS 40
>2otd_A Glycerophosphodiester phosphodiesterase; structural genomics
PSI-2, protein structure initiative, midwest center for
STR genomics, hydrolase; 2.60A {Shigella flexneri}
Length = 247
Score = 25.3 bits (56), Expect = 5.8
Identities = 5/10 (50%), Positives = 7/10 (70%)
Query: 46 VIAHRGAPHL 55
++AHRG L
Sbjct: 9 IVAHRGGGKL 18
>2oog_A Glycerophosphoryl diester phosphodiesterase; phosphatase, ST
genomics, protein structure initiative, PSI; 2.20A
{Staphylococcus aureus subsp} PDB: 2p76_A
Length = 287
Score = 25.4 bits (56), Expect = 5.8
Identities = 6/10 (60%), Positives = 6/10 (60%)
Query: 46 VIAHRGAPHL 55
IAHRGA
Sbjct: 26 TIAHRGASGY 35
>2pz0_A Glycerophosphoryl diester phosphodiesterase;
glycerophosphodiester phosphodiesterase, T.
tengcongensis; 1.91A {Thermoanaerobacter tengcongensis}
Length = 252
Score = 25.3 bits (56), Expect = 6.0
Identities = 6/10 (60%), Positives = 6/10 (60%)
Query: 46 VIAHRGAPHL 55
VIAHRG
Sbjct: 14 VIAHRGDSKN 23
>1vd6_A Glycerophosphoryl diester phosphodiesterase; glycerophosphod
phosphodiesterase, HB8; 1.30A {Thermus thermophilus}
SCOP: c.1.18.3 PDB: 1v8e_A
Length = 224
Score = 24.8 bits (55), Expect = 7.0
Identities = 5/10 (50%), Positives = 6/10 (60%)
Query: 46 VIAHRGAPHL 55
+ HRGAP
Sbjct: 10 RLGHRGAPLK 19
>3ks6_A Glycerophosphoryl diester phosphodiesterase; structural genomics,
joint center for structural genomics, JCSG; HET: MSE;
1.80A {Agrobacterium tumefaciens str} PDB: 3ks5_A*
Length = 250
Score = 24.9 bits (55), Expect = 7.9
Identities = 3/10 (30%), Positives = 5/10 (50%)
Query: 46 VIAHRGAPHL 55
+ +HRG
Sbjct: 5 IASHRGGTLE 14
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 25.2 bits (55), Expect = 7.9
Identities = 6/24 (25%), Positives = 11/24 (45%), Gaps = 3/24 (12%)
Query: 92 TSFAEFTRGKDDKKATKP---DRN 112
+ EF G+ + ++P RN
Sbjct: 1152 NTLEEFEHGRTPAEMSRPATTTRN 1175
>3t63_M 3,4-PCD, protocatechuate 3,4-dioxygenase beta chain; iron III
dependent non-heme intradiol dioxygenase, oxidoredu;
HET: GOL; 1.54A {Pseudomonas putida} PDB: 3mi1_M*
3mv4_M* 3mi5_M* 3mfl_M* 3mv6_M* 3t67_M 3pca_M* 3pcb_M*
2pcd_M* 3pce_M* 3pcf_M* 3pcc_M* 3pch_M* 3pci_M* 3pcj_M*
3pck_M* 3pcl_M* 3pcm_M* 3pcn_M* 3pcg_M ...
Length = 238
Score = 24.8 bits (54), Expect = 8.4
Identities = 9/39 (23%), Positives = 17/39 (43%), Gaps = 4/39 (10%)
Query: 6 RKVQPACMSPQYKTNVQRLSTIFRSEPLHPLQKAIRSIE 44
R P ++P YKT++ R + L + ++I
Sbjct: 13 RNWHPKALTPDYKTSIARSPR----QALVSIPQSISETT 47
>2o55_A Putative glycerophosphodiester phosphodiesterase; beta barrel,
structural genomics, protein structure initiati 2;
2.81A {Galdieria sulphuraria}
Length = 258
Score = 24.6 bits (54), Expect = 9.9
Identities = 3/9 (33%), Positives = 5/9 (55%)
Query: 46 VIAHRGAPH 54
++ HRG
Sbjct: 9 IVGHRGVGK 17
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.130 0.381
Gapped
Lambda K H
0.267 0.0618 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,561,263
Number of extensions: 75083
Number of successful extensions: 117
Number of sequences better than 10.0: 1
Number of HSP's gapped: 116
Number of HSP's successfully gapped: 23
Length of query: 116
Length of database: 6,701,793
Length adjustment: 79
Effective length of query: 37
Effective length of database: 4,496,034
Effective search space: 166353258
Effective search space used: 166353258
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.7 bits)