RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5669
         (116 letters)



>d2burb1 b.3.6.1 (B:303-540) Protocatechuate-3,4-dioxygenase, beta
          chain {Acinetobacter calcoaceticus, adp1 [TaxId: 471]}
          Length = 238

 Score = 25.0 bits (54), Expect = 2.2
 Identities = 7/41 (17%), Positives = 16/41 (39%), Gaps = 8/41 (19%)

Query: 6  RKVQPACMSPQYKTNVQRLSTIFRS--EPLHPLQKAIRSIE 44
           +  P   +P YK      +++ RS    L  + + +  + 
Sbjct: 11 TEDHPPAYAPGYK------TSVLRSPKNALISIAETLSEVT 45


>d3pccm_ b.3.6.1 (M:) Protocatechuate-3,4-dioxygenase, beta chain
          {Pseudomonas putida [TaxId: 303]}
          Length = 236

 Score = 24.6 bits (53), Expect = 3.3
 Identities = 9/39 (23%), Positives = 17/39 (43%), Gaps = 4/39 (10%)

Query: 6  RKVQPACMSPQYKTNVQRLSTIFRSEPLHPLQKAIRSIE 44
          R   P  ++P YKT++ R       + L  + ++I    
Sbjct: 13 RNWHPKALTPDYKTSIARSPR----QALVSIPQSISETT 47


>d1ydya1 c.1.18.3 (A:29-356) Glycerophosphodiester
          phosphodiesterase GlpQ {Escherichia coli [TaxId: 562]}
          Length = 328

 Score = 24.7 bits (52), Expect = 3.3
 Identities = 7/10 (70%), Positives = 7/10 (70%)

Query: 46 VIAHRGAPHL 55
          VIAHRGA   
Sbjct: 5  VIAHRGASGY 14


>d1vd6a1 c.1.18.3 (A:8-224) Putative glycerophosphodiester
          phosphodiesterase TTHB141 {Thermus thermophilus [TaxId:
          274]}
          Length = 217

 Score = 24.2 bits (51), Expect = 4.3
 Identities = 5/10 (50%), Positives = 6/10 (60%)

Query: 46 VIAHRGAPHL 55
           + HRGAP  
Sbjct: 3  RLGHRGAPLK 12


>d1zcca1 c.1.18.3 (A:1-240) Glycerophosphodiester
          phosphodiesterase UgpQ {Agrobacterium tumefaciens
          [TaxId: 358]}
          Length = 240

 Score = 24.2 bits (51), Expect = 5.3
 Identities = 4/10 (40%), Positives = 7/10 (70%)

Query: 46 VIAHRGAPHL 55
          +++HRGA   
Sbjct: 4  IVSHRGANRF 13


>d1o1za_ c.1.18.3 (A:) Hypothetical protein TM1621 {Thermotoga
          maritima [TaxId: 2336]}
          Length = 226

 Score = 23.9 bits (50), Expect = 5.7
 Identities = 4/10 (40%), Positives = 5/10 (50%)

Query: 46 VIAHRGAPHL 55
          V+ HRG    
Sbjct: 7  VLGHRGYSAK 16


>d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress
          (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 380

 Score = 23.7 bits (50), Expect = 8.6
 Identities = 7/27 (25%), Positives = 12/27 (44%)

Query: 42 SIEYVIAHRGAPHLKTKATSLPWYQTS 68
          S+  ++ +         A S P YQT+
Sbjct: 2  SVSTLLVNLDNKFDPFDAMSTPLYQTA 28


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.130    0.381 

Gapped
Lambda     K      H
   0.267   0.0542    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 375,178
Number of extensions: 13751
Number of successful extensions: 31
Number of sequences better than 10.0: 1
Number of HSP's gapped: 31
Number of HSP's successfully gapped: 8
Length of query: 116
Length of database: 2,407,596
Length adjustment: 73
Effective length of query: 43
Effective length of database: 1,405,306
Effective search space: 60428158
Effective search space used: 60428158
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.3 bits)