BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5670
(1269 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1O77|A Chain A, Crystal Structure Of The C713s Mutant Of The Tir Domain Of
Human Tlr2
pdb|1O77|B Chain B, Crystal Structure Of The C713s Mutant Of The Tir Domain Of
Human Tlr2
pdb|1O77|C Chain C, Crystal Structure Of The C713s Mutant Of The Tir Domain Of
Human Tlr2
pdb|1O77|D Chain D, Crystal Structure Of The C713s Mutant Of The Tir Domain Of
Human Tlr2
pdb|1O77|E Chain E, Crystal Structure Of The C713s Mutant Of The Tir Domain Of
Human Tlr2
Length = 146
Score = 99.4 bits (246), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/124 (39%), Positives = 75/124 (60%), Gaps = 4/124 (3%)
Query: 1085 FDAFVSYSSKDEAFVAEELAPILENGDPAYKLCLHYREFPVGGYIGDTIVQAVESSRRTI 1144
+DAFVSYS +D +V + LEN +P +KLCLH R+F G +I D I+ ++E S +T+
Sbjct: 3 YDAFVSYSERDAYWVENLMVQELENFNPPFKLCLHKRDFIPGKWIIDNIIDSIEKSHKTV 62
Query: 1145 MVLSENFIKSEWCRYEFKSAHHQVLRGKKRLIVILLGEVPQKDLDPD----IRLYLKSNT 1200
VLSENF+KSEW +YE +H ++ +++L E +K P +R + + T
Sbjct: 63 FVLSENFVKSEWSKYELDFSHFRLFDENNDAAILILLEPIEKKAIPQRFCKLRKIMNTKT 122
Query: 1201 YLQW 1204
YL+W
Sbjct: 123 YLEW 126
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 98.2 bits (243), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 99/202 (49%), Gaps = 26/202 (12%)
Query: 224 RVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGXXXXXXXXXXXXXXXX 283
+ LDL +N SLP++ F RL++L+ LYL N L L
Sbjct: 40 KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTL----------------------- 76
Query: 284 IPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLH 343
P +F + ++L+ +++ +N + L G+F+ L L L L N+L + F L
Sbjct: 77 -PAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKS--LPPRVFDSLT 133
Query: 344 RLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKL 403
+L L++ YN++ L +F L L+ L L NNQ++ + F L+ L TL + NN+L
Sbjct: 134 KLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQL 193
Query: 404 KRIESNSLDSLTALSVLSLDNN 425
KR+ + DSL L +L L N
Sbjct: 194 KRVPEGAFDSLEKLKMLQLQEN 215
Score = 85.9 bits (211), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 97/176 (55%), Gaps = 3/176 (1%)
Query: 322 LDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIES 381
LDL +N+L+ + + F L +L +L + NK+ L + IFK+L L+ L + +N++++
Sbjct: 42 LDLQSNKLSS--LPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQA 99
Query: 382 IHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSL 441
+ F L NL L + N+LK + DSLT L+ LSL NEL+ + + TSL
Sbjct: 100 LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSL 159
Query: 442 QDFHLNGNKLTEIPK-VLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTEN 496
++ L N+L +P+ L LKTL L +N + + + +SL +L L+L EN
Sbjct: 160 KELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
Score = 84.0 bits (206), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 60/180 (33%), Positives = 96/180 (53%), Gaps = 3/180 (1%)
Query: 294 DLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYN 353
D K++ LQ+N ++ L F+ LT+L +L L++N+L + + A F L L L + N
Sbjct: 38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKL--QTLPAGIFKELKNLETLWVTDN 95
Query: 354 KMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDS 413
K+ L +F L L L L+ NQ++S+ F SL+ L L + N+L+ + D
Sbjct: 96 KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDK 155
Query: 414 LTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPK-VLRNLHSLKTLDLGDN 472
LT+L L L NN+L+ + E A T L+ L+ N+L +P+ +L LK L L +N
Sbjct: 156 LTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 75/142 (52%), Gaps = 5/142 (3%)
Query: 773 CTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQIL 832
C+C ++ N +DCS+ +P IP D +L L N++ + S +F KL++L
Sbjct: 12 CSCNNN----KNSVDCSSKKL-TAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLL 66
Query: 833 FLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISN 892
+LN + ++T+ F LK L L + DN+L + F++L NL EL L N++ +
Sbjct: 67 YLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPP 126
Query: 893 RTFLSLTHLKVLQLDHNRITSF 914
R F SLT L L L +N + S
Sbjct: 127 RVFDSLTKLTYLSLGYNELQSL 148
Score = 63.5 bits (153), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 73/177 (41%), Gaps = 8/177 (4%)
Query: 177 NSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSL 236
N + +LP F L L L L NKL + F NL L +++N +L
Sbjct: 47 NKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELK------NLETLWVTDNKLQAL 100
Query: 237 PAEGFSRLSRLQELYLQGNILTFLADHALDGXXXXXXXXXXXXXXXXIPPELFNQSRDLK 296
P F +L L EL L N L L D +P +F++ LK
Sbjct: 101 PIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLK 160
Query: 297 EVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYN 353
E+ L NN + + G F+ LT+L L L NN+L V F L +L +L + N
Sbjct: 161 ELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKR--VPEGAFDSLEKLKMLQLQEN 215
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 73/280 (26%), Positives = 115/280 (41%), Gaps = 64/280 (22%)
Query: 450 KLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKL 509
KLT IP + K LDL N ++ + + + + L +L L L +N + + G+F++L
Sbjct: 27 KLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKEL 84
Query: 510 SVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGG-LFPKLPNLVWLNISENL 568
L L + NK+Q + G FD NL +RLD N L + +F L L +L++
Sbjct: 85 KNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLG--- 141
Query: 569 LEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPHSV 628
Y E++S L FD KLT S+
Sbjct: 142 ----------------------------YNELQS-LPKGVFD----KLT---------SL 159
Query: 629 ENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHKNIPDFYIGE 688
+ L L NN + +V F L + L N+LK + + A S + + + E
Sbjct: 160 KELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFD-----SLEKLKMLQLQE 214
Query: 689 NPFQCDCN-----MQWLQSYSVNKERNKPNLVDLDTVTCK 723
NP+ C CN +WL K++ L +DT C+
Sbjct: 215 NPWDCTCNGIIYMAKWL------KKKADEGLGGVDTAGCE 248
>pdb|1FYV|A Chain A, Crystal Structure Of The Tir Domain Of Human Tlr1
Length = 161
Score = 98.2 bits (243), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 61/152 (40%), Positives = 82/152 (53%), Gaps = 13/152 (8%)
Query: 1076 IEMDDRDKLFDAFVSYSSKDEAFVAEELAPILENGDPAYKLCLHYREFPVGGYIGDTIVQ 1135
+E R+ F AF+SYS D +V EL P LE ++CLH R F G I + I+
Sbjct: 4 LEELQRNLQFHAFISYSGHDSFWVKNELLPNLE--KEGXQICLHERNFVPGKSIVENIIT 61
Query: 1136 AVESSRRTIMVLSENFIKSEWCRYEFKSAHHQVLR-GKKRLIVILLGEVPQKDLDPDIRL 1194
+E S ++I VLS NF++SEWC YE AHH + G LI+ILL +PQ + P
Sbjct: 62 CIEKSYKSIFVLSPNFVQSEWCHYELYFAHHNLFHEGSNSLILILLEPIPQYSI-PSSYH 120
Query: 1195 YLKS----NTYLQWGDK-----LFWEKLKFAL 1217
LKS TYL+W + LFW L+ A+
Sbjct: 121 KLKSLXARRTYLEWPKEKSKRGLFWANLRAAI 152
>pdb|1FYX|A Chain A, Crystal Structure Of P681h Mutant Of Tir Domain Of Human
Tlr2
Length = 149
Score = 95.9 bits (237), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/128 (38%), Positives = 76/128 (59%), Gaps = 4/128 (3%)
Query: 1081 RDKLFDAFVSYSSKDEAFVAEELAPILENGDPAYKLCLHYREFPVGGYIGDTIVQAVESS 1140
R+ +DAFVSYS +D +V + LEN +P +KL LH R+F G +I D I+ ++E S
Sbjct: 2 RNIXYDAFVSYSERDAYWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKS 61
Query: 1141 RRTIMVLSENFIKSEWCRYEFKSAHHQVLRGKKRLIVILLGEVPQKDLDPD----IRLYL 1196
+T+ VLSENF+KSEW +YE +H ++ +++L E +K P +R +
Sbjct: 62 HKTVFVLSENFVKSEWXKYELDFSHFRLFDENNDAAILILLEPIEKKAIPQRFXKLRKIM 121
Query: 1197 KSNTYLQW 1204
+ TYL+W
Sbjct: 122 NTKTYLEW 129
>pdb|1FYW|A Chain A, Crystal Structure Of The Tir Domain Of Human Tlr2
Length = 149
Score = 92.8 bits (229), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 49/128 (38%), Positives = 74/128 (57%), Gaps = 4/128 (3%)
Query: 1081 RDKLFDAFVSYSSKDEAFVAEELAPILENGDPAYKLCLHYREFPVGGYIGDTIVQAVESS 1140
R+ +DAFVSYS +D +V LEN +P +KL LH R+F G +I D I+ ++E S
Sbjct: 2 RNIXYDAFVSYSERDAYWVENLXVQELENFNPPFKLXLHKRDFIPGKWIIDNIIDSIEKS 61
Query: 1141 RRTIMVLSENFIKSEWCRYEFKSAHHQVLRGKKRLIVILLGEVPQKDLDPD----IRLYL 1196
+T+ VLSENF+KSEW +YE +H ++ +++L E +K P +R
Sbjct: 62 HKTVFVLSENFVKSEWXKYELDFSHFRLFDENNDAAILILLEPIEKKAIPQRFXKLRKIX 121
Query: 1197 KSNTYLQW 1204
+ TYL+W
Sbjct: 122 NTKTYLEW 129
>pdb|2J67|A Chain A, The Tir Domain Of Human Toll-Like Receptor 10 (Tlr10)
pdb|2J67|B Chain B, The Tir Domain Of Human Toll-Like Receptor 10 (Tlr10)
Length = 178
Score = 90.5 bits (223), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 54/150 (36%), Positives = 78/150 (52%), Gaps = 9/150 (6%)
Query: 1077 EMDDRDKLFDAFVSYSSKDEAFVAEELAPILENGDPAYKLCLHYREFPVGGYIGDTIVQA 1136
E R+ F AF+SYS D +V EL P LE D + +CL+ F G I + IV
Sbjct: 28 EQLKRNVRFHAFISYSEHDSLWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSF 87
Query: 1137 VESSRRTIMVLSENFIKSEWCRYEFKSAHHQVLR-GKKRLIVILLGEVPQKDLDP---DI 1192
+E S ++I VLS NF+++EWC YEF AHH + +I+ILL +P + +
Sbjct: 88 IEKSYKSIFVLSPNFVQNEWCHYEFYFAHHNLFHENSDHIILILLEPIPFYCIPTRYHKL 147
Query: 1193 RLYLKSNTYLQWGDK-----LFWEKLKFAL 1217
+ L+ YL+W LFW L+ A+
Sbjct: 148 KALLEKKAYLEWPKDRRKCGLFWANLRAAI 177
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 89.7 bits (221), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 80/281 (28%), Positives = 131/281 (46%), Gaps = 33/281 (11%)
Query: 295 LKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNK 354
L+E+ L N ++ + PG FN L L L L +N L + + F+GL L L+I+ NK
Sbjct: 58 LEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL--KLIPLGVFTGLSNLTKLDISENK 115
Query: 355 MNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSL 414
+ L +F+DLY L+ L + +N + I F+ L++L L + L I + +L L
Sbjct: 116 IVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHL 175
Query: 415 TALSVLSLDNNELEYIEENALK---------------------------NSTSLQDFHLN 447
L VL L + + I + + K N TSL H N
Sbjct: 176 HGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCN 235
Query: 448 GNKLTEIPKV-LRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVF 506
LT +P + +R+L L+ L+L N I+ I L+ L +L ++L ++ + F
Sbjct: 236 ---LTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAF 292
Query: 507 EKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLT 547
L+ L +LN++ N++ +E F + NL + LD N L
Sbjct: 293 RGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333
Score = 84.7 bits (208), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 84/410 (20%), Positives = 180/410 (43%), Gaps = 55/410 (13%)
Query: 370 QVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEY 429
++L L N+I++++++ FAS +L L ++ N + +E + ++L L L L +N L+
Sbjct: 35 RLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKL 94
Query: 430 IEENALKNSTSLQDFHLNGNKLT-EIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQL 488
I ++L ++ NK+ + + ++L++LK+L++GDN + I++ + + L+ L
Sbjct: 95 IPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSL 154
Query: 489 AGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDG-NYLT 547
L L + N+++I L L +L L I + +F L + + YL
Sbjct: 155 EQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLD 214
Query: 548 DIGGLFPKLPNLVW-LNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRL 606
+ PN ++ LN++ + + +P Y + + L
Sbjct: 215 TMT------PNCLYGLNLTSLSITHCNLTAVP------------------YLAVRHLVYL 250
Query: 607 TYFDASSNKLTELTGNAIPH--SVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKN 664
+ + S N ++ + G+ + ++ + L ++ V+PY F L +++ GN+L
Sbjct: 251 RFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTT 310
Query: 665 INQTALRISPLPSHKNIPDFYIGENPFQCDCNMQWL--QSYSVNKERNKPNLVDLDTV-- 720
+ ++ S N+ + NP CDC + W+ + + +N R +P + V
Sbjct: 311 LEESVFH-----SVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATPEFVQG 365
Query: 721 ---------------TCK--LLYNRANPAILLKEAHSNQFLCEYETNCAP 753
TC+ + +R + + E H+ QF+C + + P
Sbjct: 366 KEFKDFPDVLLPNYFTCRRARIRDRKAQQVFVDEGHTVQFVCRADGDPPP 415
Score = 69.7 bits (169), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 79/279 (28%), Positives = 119/279 (42%), Gaps = 28/279 (10%)
Query: 317 TQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLEN 376
T+ +LDL N + + +N F+ L L + N ++ ++ F +L+ L+ L L +
Sbjct: 32 TETRLLDLGKNRI--KTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89
Query: 377 NQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALK 436
N+++ I F LSNL L +S NK+ + L L L + +N+L YI A
Sbjct: 90 NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFS 149
Query: 437 NSTSLQDFHLNGNKLTEIP-KVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLA------ 489
SL+ L LT IP + L +LH L L L I I + S L++L
Sbjct: 150 GLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISH 209
Query: 490 -------------GLRLTENNISNISKGVFEKLSV-----LTILNLASNKIQKVEAGTFD 531
GL LT +I++ + L+V L LNL+ N I +E
Sbjct: 210 WPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLH 269
Query: 532 NNSNLVAIRLDGNYLTDIGGL-FPKLPNLVWLNISENLL 569
L I+L G L + F L L LN+S N L
Sbjct: 270 ELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQL 308
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/255 (23%), Positives = 116/255 (45%), Gaps = 16/255 (6%)
Query: 177 NSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSL 236
N + +P +F L +L+ L++++NK+ + + F + NL+ L++ +N +
Sbjct: 90 NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDL------YNLKSLEVGDNDLVYI 143
Query: 237 PAEGFSRLSRLQELYLQGNILTFLADHALDGXXXXXXXXXXXXXXXXIPPELFNQSRDLK 296
FS L+ L++L L+ LT + AL I F + LK
Sbjct: 144 SHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLK 203
Query: 297 EVYLQN-NSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLV---VLNIAY 352
+ + + ++ + P L L+L++ +T + A + + LV LN++Y
Sbjct: 204 VLEISHWPYLDTMTPNC------LYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSY 257
Query: 353 NKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLD 412
N ++ ++ S+ +L RLQ + L Q+ + F L+ L L +S N+L +E +
Sbjct: 258 NPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFH 317
Query: 413 SLTALSVLSLDNNEL 427
S+ L L LD+N L
Sbjct: 318 SVGNLETLILDSNPL 332
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 70/176 (39%), Gaps = 29/176 (16%)
Query: 769 CPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKK 828
CP C C S + + C + +P IP + L L NRI + F
Sbjct: 3 CPPRCEC----SAQDRAVLCHRKRFV-AVPEGIPTETRLLDLGKNRIKTLNQDEFASFPH 57
Query: 829 LQILFLNSSHVETIHNKTFN------------------------GLKELIILRLDDNRLT 864
L+ L LN + V + FN GL L L + +N++
Sbjct: 58 LEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIV 117
Query: 865 EIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLS 920
+ Y F+ L NL+ L + N ++YIS+R F L L+ L L+ +TS LS
Sbjct: 118 ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALS 173
Score = 38.5 bits (88), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 46/211 (21%), Positives = 72/211 (34%), Gaps = 74/211 (35%)
Query: 808 LYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIR 867
L + N + + +F G L+ L L ++ +I + + L LI+LRL + IR
Sbjct: 133 LEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIR 192
Query: 868 GYEFERLENL------------------------------------------------RE 879
Y F+RL L R
Sbjct: 193 DYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRF 252
Query: 880 LYLQYNKIIYISNR------------------------TFLSLTHLKVLQLDHNRITSF- 914
L L YN I I F L +L+VL + N++T+
Sbjct: 253 LNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLE 312
Query: 915 -AVWHLSSQIQSITLTSNPWSCDCDFTEKFR 944
+V+H ++++ L SNP +CDC FR
Sbjct: 313 ESVFHSVGNLETLILDSNPLACDCRLLWVFR 343
Score = 35.8 bits (81), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 65/135 (48%), Gaps = 7/135 (5%)
Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
T+L + N+I ++ + F L+ L + + + I ++ F+GL L L L+ LT
Sbjct: 107 TKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS 166
Query: 866 IRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDH----NRITSFAVWHLSS 921
I L L L L++ I I + +F L LKVL++ H + +T ++ L+
Sbjct: 167 IPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNL 226
Query: 922 QIQSIT---LTSNPW 933
SIT LT+ P+
Sbjct: 227 TSLSITHCNLTAVPY 241
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 87.4 bits (215), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 61/175 (34%), Positives = 89/175 (50%), Gaps = 6/175 (3%)
Query: 296 KEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKM 355
KEV Q S++ + GI +L DL + L ++ ATF GL +L LN+ YN++
Sbjct: 17 KEVDCQGKSLDSVPSGIPADTEKL---DLQSTGLAT--LSDATFRGLTKLTWLNLDYNQL 71
Query: 356 NKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLT 415
L + +F DL L L L NNQ+ S+ F L+ L L + N+LK + S D LT
Sbjct: 72 QTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLT 131
Query: 416 ALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIP-KVLRNLHSLKTLDL 469
L L L+ N+L+ I A T+LQ L+ N+L +P L L+T+ L
Sbjct: 132 KLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITL 186
Score = 78.2 bits (191), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 82/157 (52%), Gaps = 2/157 (1%)
Query: 294 DLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYN 353
D +++ LQ+ + L+ F LT+L L+L N+L + ++A F L L L +A N
Sbjct: 36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQL--QTLSAGVFDDLTELGTLGLANN 93
Query: 354 KMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDS 413
++ L +F L +L L+L NQ++S+ F L+ L L ++ N+L+ I + + D
Sbjct: 94 QLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDK 153
Query: 414 LTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNK 450
LT L LSL N+L+ + A LQ L GN+
Sbjct: 154 LTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ 190
Score = 73.9 bits (180), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 83/163 (50%), Gaps = 11/163 (6%)
Query: 300 LQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLD 359
L N + L+ G+F+ LT+L L L+NN+L + F L +L L + N++ L
Sbjct: 66 LDYNQLQTLSAGVFDDLTELGTLGLANNQLAS--LPLGVFDHLTQLDKLYLGGNQLKSLP 123
Query: 360 SSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSV 419
S +F L +L+ L L NQ++SI F L+NL TL +S N+L+ + + D L L
Sbjct: 124 SGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQT 183
Query: 420 LSLDNNELE-------YIEENALKNSTSLQDFHLNGNKLTEIP 455
++L N+ + Y+ + +NS ++D G L E P
Sbjct: 184 ITLFGNQFDCSRCEILYLSQWIRENSNKVKDG--TGQNLHESP 224
Score = 70.5 bits (171), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 79/173 (45%), Gaps = 23/173 (13%)
Query: 372 LHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIE 431
L L++ + ++ TF L+ L L + N+L+ + + D LT L L L NN+L +
Sbjct: 40 LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLP 99
Query: 432 ENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGL 491
+ T L +L GN+L +P + + L +L L
Sbjct: 100 LGVFDHLTQLDKLYLGGNQLKSLPSGV-----------------------FDRLTKLKEL 136
Query: 492 RLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGN 544
RL N + +I G F+KL+ L L+L++N++Q V G FD L I L GN
Sbjct: 137 RLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 100/236 (42%), Gaps = 45/236 (19%)
Query: 178 SIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLP 237
+ TL DA F L L++LNL N+L ++ F + L L L+NN SLP
Sbjct: 46 GLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDL------TELGTLGLANNQLASLP 99
Query: 238 AEGFSRLSRLQELYLQGNILTFLADHALDGXXXXXXXXXXXXXXXXIPPELFNQSRDLKE 297
F L++L +LYL GN L +P +F++ LKE
Sbjct: 100 LGVFDHLTQLDKLYLGGNQL------------------------KSLPSGVFDRLTKLKE 135
Query: 298 VYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNK 357
+ L N + + G F+ LT L L LS N+L + V F L +L + + N+
Sbjct: 136 LRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQL--QSVPHGAFDRLGKLQTITLFGNQF-- 191
Query: 358 LDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLH----TLIMSNNKLKRIESN 409
D R ++L+L E+ ++ + NLH + S+ K+ R +N
Sbjct: 192 -------DCSRCEILYLSQWIRENSNKVKDGTGQNLHESPDGVTCSDGKVVRTVTN 240
Score = 63.5 bits (153), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 81/169 (47%), Gaps = 9/169 (5%)
Query: 765 CEMTCPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFI 824
CE CTC +DC D+ +P IP D +L L + + +F
Sbjct: 4 CETV--TGCTCNEG----KKEVDCQGKSLDS-VPSGIPADTEKLDLQSTGLATLSDATFR 56
Query: 825 GRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQY 884
G KL L L+ + ++T+ F+ L EL L L +N+L + F+ L L +LYL
Sbjct: 57 GLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGG 116
Query: 885 NKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLS--SQIQSITLTSN 931
N++ + + F LT LK L+L+ N++ S + +Q+++L++N
Sbjct: 117 NQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTN 165
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 84/176 (47%), Gaps = 3/176 (1%)
Query: 420 LSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEI-PKVLRNLHSLKTLDLGDNLITEIN 478
L L + L + + + T L +L+ N+L + V +L L TL L +N + +
Sbjct: 40 LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLP 99
Query: 479 NLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVA 538
+ L QL L L N + ++ GVF++L+ L L L +N++Q + AG FD +NL
Sbjct: 100 LGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQT 159
Query: 539 IRLDGNYLTDIG-GLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISE 593
+ L N L + G F +L L + + N + ++ QW+ + N++ +
Sbjct: 160 LSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCEILYLS-QWIRENSNKVKD 214
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 67/155 (43%), Gaps = 13/155 (8%)
Query: 101 SSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGXXXXXXXXXXXHNTDWSTMSLDISHN 160
++LS +F+ L L L++++ ++ LSAG F N +++ L + +
Sbjct: 48 ATLSDATFRGLTKLTWLNLDYNQLQTLSAGVF--DDLTELGTLGLANNQLASLPLGVFDH 105
Query: 161 VFTXXXXXXXXXXXXMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCG 220
+ N + +LP +F L L L L N+L ++ +F
Sbjct: 106 L-----TQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKL------ 154
Query: 221 INLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGN 255
NL+ L LS N S+P F RL +LQ + L GN
Sbjct: 155 TNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 87.4 bits (215), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 61/175 (34%), Positives = 89/175 (50%), Gaps = 6/175 (3%)
Query: 296 KEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKM 355
KEV Q S++ + GI +L DL + L ++ ATF GL +L LN+ YN++
Sbjct: 17 KEVDCQGKSLDSVPSGIPADTEKL---DLQSTGLAT--LSDATFRGLTKLTWLNLDYNQL 71
Query: 356 NKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLT 415
L + +F DL L L L NNQ+ S+ F L+ L L + N+LK + S D LT
Sbjct: 72 QTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLT 131
Query: 416 ALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIP-KVLRNLHSLKTLDL 469
L L L+ N+L+ I A T+LQ L+ N+L +P L L+T+ L
Sbjct: 132 KLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITL 186
Score = 77.8 bits (190), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 82/157 (52%), Gaps = 2/157 (1%)
Query: 294 DLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYN 353
D +++ LQ+ + L+ F LT+L L+L N+L + ++A F L L L +A N
Sbjct: 36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQL--QTLSAGVFDDLTELGTLGLANN 93
Query: 354 KMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDS 413
++ L +F L +L L+L NQ++S+ F L+ L L ++ N+L+ I + + D
Sbjct: 94 QLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDK 153
Query: 414 LTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNK 450
LT L LSL N+L+ + A LQ L GN+
Sbjct: 154 LTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ 190
Score = 73.9 bits (180), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 83/163 (50%), Gaps = 11/163 (6%)
Query: 300 LQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLD 359
L N + L+ G+F+ LT+L L L+NN+L + F L +L L + N++ L
Sbjct: 66 LDYNQLQTLSAGVFDDLTELGTLGLANNQLAS--LPLGVFDHLTQLDKLYLGGNQLKSLP 123
Query: 360 SSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSV 419
S +F L +L+ L L NQ++SI F L+NL TL +S N+L+ + + D L L
Sbjct: 124 SGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQT 183
Query: 420 LSLDNNELE-------YIEENALKNSTSLQDFHLNGNKLTEIP 455
++L N+ + Y+ + +NS ++D G L E P
Sbjct: 184 ITLFGNQFDCSRCETLYLSQWIRENSNKVKDG--TGQNLHESP 224
Score = 70.5 bits (171), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 79/173 (45%), Gaps = 23/173 (13%)
Query: 372 LHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIE 431
L L++ + ++ TF L+ L L + N+L+ + + D LT L L L NN+L +
Sbjct: 40 LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLP 99
Query: 432 ENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGL 491
+ T L +L GN+L +P + + L +L L
Sbjct: 100 LGVFDHLTQLDKLYLGGNQLKSLPSGV-----------------------FDRLTKLKEL 136
Query: 492 RLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGN 544
RL N + +I G F+KL+ L L+L++N++Q V G FD L I L GN
Sbjct: 137 RLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 65/236 (27%), Positives = 101/236 (42%), Gaps = 45/236 (19%)
Query: 178 SIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLP 237
+ TL DA F L L++LNL N+L ++ F + L L L+NN SLP
Sbjct: 46 GLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDL------TELGTLGLANNQLASLP 99
Query: 238 AEGFSRLSRLQELYLQGNILTFLADHALDGXXXXXXXXXXXXXXXXIPPELFNQSRDLKE 297
F L++L +LYL GN L +P +F++ LKE
Sbjct: 100 LGVFDHLTQLDKLYLGGNQL------------------------KSLPSGVFDRLTKLKE 135
Query: 298 VYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNK 357
+ L N + + G F+ LT L L LS N+L + V F L +L + + N+
Sbjct: 136 LRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQL--QSVPHGAFDRLGKLQTITLFG---NQ 190
Query: 358 LDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLH----TLIMSNNKLKRIESN 409
D S + LY Q + +N+++ + NLH + S+ K+ R +N
Sbjct: 191 FDCSRCETLYLSQWIRENSNKVKD------GTGQNLHESPDGVTCSDGKVVRTVTN 240
Score = 63.5 bits (153), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 79/162 (48%), Gaps = 7/162 (4%)
Query: 772 NCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQI 831
CTC +DC D+ +P IP D +L L + + +F G KL
Sbjct: 9 GCTCNEG----KKEVDCQGKSLDS-VPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTW 63
Query: 832 LFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYIS 891
L L+ + ++T+ F+ L EL L L +N+L + F+ L L +LYL N++ +
Sbjct: 64 LNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLP 123
Query: 892 NRTFLSLTHLKVLQLDHNRITSFAVWHLS--SQIQSITLTSN 931
+ F LT LK L+L+ N++ S + +Q+++L++N
Sbjct: 124 SGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTN 165
Score = 53.9 bits (128), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 73/150 (48%), Gaps = 2/150 (1%)
Query: 420 LSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEI-PKVLRNLHSLKTLDLGDNLITEIN 478
L L + L + + + T L +L+ N+L + V +L L TL L +N + +
Sbjct: 40 LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLP 99
Query: 479 NLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVA 538
+ L QL L L N + ++ GVF++L+ L L L +N++Q + AG FD +NL
Sbjct: 100 LGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQT 159
Query: 539 IRLDGNYLTDIG-GLFPKLPNLVWLNISEN 567
+ L N L + G F +L L + + N
Sbjct: 160 LSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 67/155 (43%), Gaps = 13/155 (8%)
Query: 101 SSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGXXXXXXXXXXXHNTDWSTMSLDISHN 160
++LS +F+ L L L++++ ++ LSAG F N +++ L + +
Sbjct: 48 ATLSDATFRGLTKLTWLNLDYNQLQTLSAGVF--DDLTELGTLGLANNQLASLPLGVFDH 105
Query: 161 VFTXXXXXXXXXXXXMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCG 220
+ N + +LP +F L L L L N+L ++ +F
Sbjct: 106 L-----TQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKL------ 154
Query: 221 INLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGN 255
NL+ L LS N S+P F RL +LQ + L GN
Sbjct: 155 TNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 84.3 bits (207), Expect = 4e-16, Method: Composition-based stats.
Identities = 56/189 (29%), Positives = 92/189 (48%), Gaps = 2/189 (1%)
Query: 334 VNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENN-QIESIHRNTFASLSN 392
V AA+F L +L + N + ++D++ F L L+ L L +N Q+ S+ TF L
Sbjct: 47 VPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGR 106
Query: 393 LHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLT 452
LHTL + L+ + L AL L L +N L+ + ++ ++ +L L+GN+++
Sbjct: 107 LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS 166
Query: 453 EIP-KVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSV 511
+P + R LHSL L L N + ++ + L +L L L NN+S + L
Sbjct: 167 SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRA 226
Query: 512 LTILNLASN 520
L L L N
Sbjct: 227 LQYLRLNDN 235
Score = 65.9 bits (159), Expect = 2e-10, Method: Composition-based stats.
Identities = 53/199 (26%), Positives = 83/199 (41%), Gaps = 3/199 (1%)
Query: 228 LSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGXXXXXXX-XXXXXXXXXIPP 286
L N +PA F L L+L N+L + A G + P
Sbjct: 39 LHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDP 98
Query: 287 ELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLV 346
F+ L ++L + L PG+F L L L L +N L + + TF L L
Sbjct: 99 ATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL--QALPDDTFRDLGNLT 156
Query: 347 VLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRI 406
L + N+++ + F+ L+ L L L N++ +H + F L L TL + N L +
Sbjct: 157 HLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSAL 216
Query: 407 ESNSLDSLTALSVLSLDNN 425
+ +L L AL L L++N
Sbjct: 217 PTEALAPLRALQYLRLNDN 235
Score = 65.1 bits (157), Expect = 2e-10, Method: Composition-based stats.
Identities = 57/202 (28%), Positives = 93/202 (46%), Gaps = 5/202 (2%)
Query: 370 QVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSL-DNNELE 428
Q + L N+I + +F + NL L + +N L RI++ + L L L L DN +L
Sbjct: 35 QRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR 94
Query: 429 YIEENALKNSTSLQDFHLNGNKLTEI-PKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQ 487
++ L HL+ L E+ P + R L +L+ L L DN + + + + L
Sbjct: 95 SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGN 154
Query: 488 LAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLT 547
L L L N IS++ + F L L L L N++ V F + L+ + L N L+
Sbjct: 155 LTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS 214
Query: 548 DI--GGLFPKLPNLVWLNISEN 567
+ L P L L +L +++N
Sbjct: 215 ALPTEALAP-LRALQYLRLNDN 235
Score = 63.9 bits (154), Expect = 6e-10, Method: Composition-based stats.
Identities = 43/152 (28%), Positives = 70/152 (46%), Gaps = 3/152 (1%)
Query: 808 LYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIR 867
L+LD + +G F G LQ L+L + ++ + + TF L L L L NR++ +
Sbjct: 110 LHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP 169
Query: 868 GYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLS--SQIQS 925
F L +L L L N++ ++ F L L L L N +++ L+ +Q
Sbjct: 170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQY 229
Query: 926 ITLTSNPWSCDCDFTEKFRDYLQRSRSSVHDI 957
+ L NPW CDC +LQ+ R S ++
Sbjct: 230 LRLNDNPWVCDCR-ARPLWAWLQKFRGSSSEV 260
Score = 62.8 bits (151), Expect = 1e-09, Method: Composition-based stats.
Identities = 64/243 (26%), Positives = 106/243 (43%), Gaps = 36/243 (14%)
Query: 469 LGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASN-KIQKVEA 527
L N I+ + S + L L L N ++ I F L++L L+L+ N +++ V+
Sbjct: 39 LHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDP 98
Query: 528 GTFDNNSNLVAIRLDGNYLTDIG-GLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDI 586
TF L + LD L ++G GLF L L +L + +N L+ +P D
Sbjct: 99 ATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-----ALPDD------ 147
Query: 587 HGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIP--HSVENLFLTNNLISKVQPY 644
+LGN LT+ N+++ + A HS++ L L N ++ V P+
Sbjct: 148 ---TFRDLGN---------LTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPH 195
Query: 645 TFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHKNIPDFYIGENPFQCDCNMQ----WL 700
F L + L N L + AL +PL + + + +NP+ CDC + WL
Sbjct: 196 AFRDLGRLMTLYLFANNLSALPTEAL--APL---RALQYLRLNDNPWVCDCRARPLWAWL 250
Query: 701 QSY 703
Q +
Sbjct: 251 QKF 253
Score = 62.4 bits (150), Expect = 2e-09, Method: Composition-based stats.
Identities = 51/190 (26%), Positives = 81/190 (42%), Gaps = 25/190 (13%)
Query: 284 IPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLH 343
+P F R+L ++L +N + + F L L LDLS+N V+ ATF GL
Sbjct: 47 VPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRS-VDPATFHGLG 105
Query: 344 RLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENN------------------------QI 379
RL L++ + +L +F+ L LQ L+L++N +I
Sbjct: 106 RLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI 165
Query: 380 ESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNST 439
S+ F L +L L++ N++ + ++ L L L L N L + AL
Sbjct: 166 SSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLR 225
Query: 440 SLQDFHLNGN 449
+LQ LN N
Sbjct: 226 ALQYLRLNDN 235
Score = 60.8 bits (146), Expect = 4e-09, Method: Composition-based stats.
Identities = 51/170 (30%), Positives = 74/170 (43%), Gaps = 29/170 (17%)
Query: 769 CPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKK 828
CP C CY++ + C G +P IP + ++L GNRI V + SF +
Sbjct: 2 CPGACVCYNEPKVTTS---CPQQGL-QAVPVGIPAASQRIFLHGNRISHVPAASFRACRN 57
Query: 829 LQILFLNS-------------------------SHVETIHNKTFNGLKELIILRLDDNRL 863
L IL+L+S + + ++ TF+GL L L LD L
Sbjct: 58 LTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGL 117
Query: 864 TEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITS 913
E+ F L L+ LYLQ N + + + TF L +L L L NRI+S
Sbjct: 118 QELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS 167
Score = 40.4 bits (93), Expect = 0.006, Method: Composition-based stats.
Identities = 43/170 (25%), Positives = 67/170 (39%), Gaps = 19/170 (11%)
Query: 177 NSIWTLPDAIFCPLQSLSYLNLTQN-KLSNV--ATF----SFSNYDTARCGIN------- 222
N + + A F L L L+L+ N +L +V ATF RCG+
Sbjct: 66 NVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLF 125
Query: 223 -----LRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGXXXXXXXXXX 277
L+ L L +N+ +LP + F L L L+L GN ++ + + A G
Sbjct: 126 RGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLH 185
Query: 278 XXXXXXIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNN 327
+ P F L +YL N+++ L L L L L++N
Sbjct: 186 QNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 84.3 bits (207), Expect = 4e-16, Method: Composition-based stats.
Identities = 56/189 (29%), Positives = 92/189 (48%), Gaps = 2/189 (1%)
Query: 334 VNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENN-QIESIHRNTFASLSN 392
V AA+F L +L + N + ++D++ F L L+ L L +N Q+ S+ TF L
Sbjct: 46 VPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGR 105
Query: 393 LHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLT 452
LHTL + L+ + L AL L L +N L+ + ++ ++ +L L+GN+++
Sbjct: 106 LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS 165
Query: 453 EIP-KVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSV 511
+P + R LHSL L L N + ++ + L +L L L NN+S + L
Sbjct: 166 SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRA 225
Query: 512 LTILNLASN 520
L L L N
Sbjct: 226 LQYLRLNDN 234
Score = 65.9 bits (159), Expect = 2e-10, Method: Composition-based stats.
Identities = 53/199 (26%), Positives = 83/199 (41%), Gaps = 3/199 (1%)
Query: 228 LSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGXXXXXXX-XXXXXXXXXIPP 286
L N +PA F L L+L N+L + A G + P
Sbjct: 38 LHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDP 97
Query: 287 ELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLV 346
F+ L ++L + L PG+F L L L L +N L + + TF L L
Sbjct: 98 ATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL--QALPDDTFRDLGNLT 155
Query: 347 VLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRI 406
L + N+++ + F+ L+ L L L N++ +H + F L L TL + N L +
Sbjct: 156 HLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSAL 215
Query: 407 ESNSLDSLTALSVLSLDNN 425
+ +L L AL L L++N
Sbjct: 216 PTEALAPLRALQYLRLNDN 234
Score = 65.1 bits (157), Expect = 2e-10, Method: Composition-based stats.
Identities = 57/202 (28%), Positives = 93/202 (46%), Gaps = 5/202 (2%)
Query: 370 QVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSL-DNNELE 428
Q + L N+I + +F + NL L + +N L RI++ + L L L L DN +L
Sbjct: 34 QRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR 93
Query: 429 YIEENALKNSTSLQDFHLNGNKLTEI-PKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQ 487
++ L HL+ L E+ P + R L +L+ L L DN + + + + L
Sbjct: 94 SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGN 153
Query: 488 LAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLT 547
L L L N IS++ + F L L L L N++ V F + L+ + L N L+
Sbjct: 154 LTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS 213
Query: 548 DI--GGLFPKLPNLVWLNISEN 567
+ L P L L +L +++N
Sbjct: 214 ALPTEALAP-LRALQYLRLNDN 234
Score = 63.9 bits (154), Expect = 6e-10, Method: Composition-based stats.
Identities = 43/152 (28%), Positives = 70/152 (46%), Gaps = 3/152 (1%)
Query: 808 LYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIR 867
L+LD + +G F G LQ L+L + ++ + + TF L L L L NR++ +
Sbjct: 109 LHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP 168
Query: 868 GYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLS--SQIQS 925
F L +L L L N++ ++ F L L L L N +++ L+ +Q
Sbjct: 169 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQY 228
Query: 926 ITLTSNPWSCDCDFTEKFRDYLQRSRSSVHDI 957
+ L NPW CDC +LQ+ R S ++
Sbjct: 229 LRLNDNPWVCDCR-ARPLWAWLQKFRGSSSEV 259
Score = 62.8 bits (151), Expect = 1e-09, Method: Composition-based stats.
Identities = 64/243 (26%), Positives = 106/243 (43%), Gaps = 36/243 (14%)
Query: 469 LGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASN-KIQKVEA 527
L N I+ + S + L L L N ++ I F L++L L+L+ N +++ V+
Sbjct: 38 LHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDP 97
Query: 528 GTFDNNSNLVAIRLDGNYLTDIG-GLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDI 586
TF L + LD L ++G GLF L L +L + +N L+ +P D
Sbjct: 98 ATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-----ALPDD------ 146
Query: 587 HGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIP--HSVENLFLTNNLISKVQPY 644
+LGN LT+ N+++ + A HS++ L L N ++ V P+
Sbjct: 147 ---TFRDLGN---------LTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPH 194
Query: 645 TFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHKNIPDFYIGENPFQCDCNMQ----WL 700
F L + L N L + AL +PL + + + +NP+ CDC + WL
Sbjct: 195 AFRDLGRLMTLYLFANNLSALPTEAL--APL---RALQYLRLNDNPWVCDCRARPLWAWL 249
Query: 701 QSY 703
Q +
Sbjct: 250 QKF 252
Score = 62.4 bits (150), Expect = 2e-09, Method: Composition-based stats.
Identities = 51/190 (26%), Positives = 81/190 (42%), Gaps = 25/190 (13%)
Query: 284 IPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLH 343
+P F R+L ++L +N + + F L L LDLS+N V+ ATF GL
Sbjct: 46 VPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRS-VDPATFHGLG 104
Query: 344 RLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENN------------------------QI 379
RL L++ + +L +F+ L LQ L+L++N +I
Sbjct: 105 RLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI 164
Query: 380 ESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNST 439
S+ F L +L L++ N++ + ++ L L L L N L + AL
Sbjct: 165 SSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLR 224
Query: 440 SLQDFHLNGN 449
+LQ LN N
Sbjct: 225 ALQYLRLNDN 234
Score = 60.8 bits (146), Expect = 4e-09, Method: Composition-based stats.
Identities = 51/170 (30%), Positives = 74/170 (43%), Gaps = 29/170 (17%)
Query: 769 CPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKK 828
CP C CY++ + C G +P IP + ++L GNRI V + SF +
Sbjct: 1 CPGACVCYNEPKVTTS---CPQQGL-QAVPVGIPAASQRIFLHGNRISHVPAASFRACRN 56
Query: 829 LQILFLNS-------------------------SHVETIHNKTFNGLKELIILRLDDNRL 863
L IL+L+S + + ++ TF+GL L L LD L
Sbjct: 57 LTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGL 116
Query: 864 TEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITS 913
E+ F L L+ LYLQ N + + + TF L +L L L NRI+S
Sbjct: 117 QELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS 166
Score = 40.4 bits (93), Expect = 0.006, Method: Composition-based stats.
Identities = 43/170 (25%), Positives = 67/170 (39%), Gaps = 19/170 (11%)
Query: 177 NSIWTLPDAIFCPLQSLSYLNLTQN-KLSNV--ATF----SFSNYDTARCGIN------- 222
N + + A F L L L+L+ N +L +V ATF RCG+
Sbjct: 65 NVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLF 124
Query: 223 -----LRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGXXXXXXXXXX 277
L+ L L +N+ +LP + F L L L+L GN ++ + + A G
Sbjct: 125 RGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLH 184
Query: 278 XXXXXXIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNN 327
+ P F L +YL N+++ L L L L L++N
Sbjct: 185 QNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 234
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 83.2 bits (204), Expect = 9e-16, Method: Composition-based stats.
Identities = 57/190 (30%), Positives = 92/190 (48%), Gaps = 2/190 (1%)
Query: 333 WVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENN-QIESIHRNTFASLS 391
+V AA+F L +L + N + +D++ F L L+ L L +N Q+ + TF L
Sbjct: 45 YVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLG 104
Query: 392 NLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKL 451
+LHTL + L+ + L AL L L +N L+ + +N ++ +L L+GN++
Sbjct: 105 HLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRI 164
Query: 452 TEIPK-VLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLS 510
+P+ R LHSL L L N + ++ + L +L L L NN+S + V L
Sbjct: 165 PSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSMLPAEVLVPLR 224
Query: 511 VLTILNLASN 520
L L L N
Sbjct: 225 SLQYLRLNDN 234
Score = 60.8 bits (146), Expect = 4e-09, Method: Composition-based stats.
Identities = 51/170 (30%), Positives = 71/170 (41%), Gaps = 29/170 (17%)
Query: 769 CPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKK 828
CP C CY++ + C G +P IP + ++L GNRI V + SF +
Sbjct: 1 CPGACVCYNEPKVTTS---CPQQGL-QAVPTGIPASSQRIFLHGNRISYVPAASFQSCRN 56
Query: 829 LQILFLNS-------------------------SHVETIHNKTFNGLKELIILRLDDNRL 863
L IL+L+S + + + TF GL L L LD L
Sbjct: 57 LTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGL 116
Query: 864 TEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITS 913
E+ F L L+ LYLQ N + + + TF L +L L L NRI S
Sbjct: 117 QELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPS 166
Score = 60.5 bits (145), Expect = 5e-09, Method: Composition-based stats.
Identities = 51/190 (26%), Positives = 81/190 (42%), Gaps = 25/190 (13%)
Query: 284 IPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLH 343
+P F R+L ++L +N++ + F LT L LDLS+N V+ TF GL
Sbjct: 46 VPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRV-VDPTTFRGLG 104
Query: 344 RLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENN------------------------QI 379
L L++ + +L +F+ L LQ L+L++N +I
Sbjct: 105 HLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRI 164
Query: 380 ESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNST 439
S+ + F L +L L++ N + R+ ++ L L L L N L + L
Sbjct: 165 PSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSMLPAEVLVPLR 224
Query: 440 SLQDFHLNGN 449
SLQ LN N
Sbjct: 225 SLQYLRLNDN 234
Score = 59.7 bits (143), Expect = 1e-08, Method: Composition-based stats.
Identities = 43/152 (28%), Positives = 67/152 (44%), Gaps = 3/152 (1%)
Query: 808 LYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIR 867
L+LD + +G F G LQ L+L ++++ + + TF L L L L NR+ +
Sbjct: 109 LHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVP 168
Query: 868 GYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLS--SQIQS 925
+ F L +L L L N + + F L L L L N ++ L +Q
Sbjct: 169 EHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSMLPAEVLVPLRSLQY 228
Query: 926 ITLTSNPWSCDCDFTEKFRDYLQRSRSSVHDI 957
+ L NPW CDC +LQ+ R S ++
Sbjct: 229 LRLNDNPWVCDCR-ARPLWAWLQKFRGSSSEV 259
Score = 59.7 bits (143), Expect = 1e-08, Method: Composition-based stats.
Identities = 65/243 (26%), Positives = 107/243 (44%), Gaps = 36/243 (14%)
Query: 469 LGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASN-KIQKVEA 527
L N I+ + S S L L L N ++ I F L++L L+L+ N +++ V+
Sbjct: 38 LHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDP 97
Query: 528 GTFDNNSNLVAIRLDGNYLTDIG-GLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDI 586
TF +L + LD L ++G GLF L L +L + +N +LQ L
Sbjct: 98 TTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN------------NLQALP- 144
Query: 587 HGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIP--HSVENLFLTNNLISKVQPY 644
N +LGN LT+ N++ + +A HS++ L L N +++V P+
Sbjct: 145 -DNTFRDLGN---------LTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPH 194
Query: 645 TFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHKNIPDFYIGENPFQCDCNMQ----WL 700
F L + L N L + L PL +++ + +NP+ CDC + WL
Sbjct: 195 AFRDLGRLMTLYLFANNLSMLPAEVL--VPL---RSLQYLRLNDNPWVCDCRARPLWAWL 249
Query: 701 QSY 703
Q +
Sbjct: 250 QKF 252
Score = 48.9 bits (115), Expect = 2e-05, Method: Composition-based stats.
Identities = 53/204 (25%), Positives = 86/204 (42%), Gaps = 15/204 (7%)
Query: 396 LIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEI- 454
+ + N++ + + S S L++L L +N L I+ A T L+ L+ N +
Sbjct: 36 IFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVV 95
Query: 455 -PKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLT 513
P R L L TL L + E+ L L L L +NN+ + F L LT
Sbjct: 96 DPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLT 155
Query: 514 ILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIG-GLFPKLPNLVWLNISENLLEWF 572
L L N+I V F +L + L N++ + F L L+ L + N L
Sbjct: 156 HLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNL--- 212
Query: 573 DYALIPAD-------LQWLDIHGN 589
+++PA+ LQ+L ++ N
Sbjct: 213 --SMLPAEVLVPLRSLQYLRLNDN 234
Score = 43.1 bits (100), Expect = 9e-04, Method: Composition-based stats.
Identities = 41/170 (24%), Positives = 67/170 (39%), Gaps = 19/170 (11%)
Query: 177 NSIWTLPDAIFCPLQSLSYLNLTQN---KLSNVATFS----FSNYDTARCGIN------- 222
N++ + A F L L L+L+ N ++ + TF RCG+
Sbjct: 65 NALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELGPGLF 124
Query: 223 -----LRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGXXXXXXXXXX 277
L+ L L +N+ +LP F L L L+L GN + + +HA G
Sbjct: 125 RGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLH 184
Query: 278 XXXXXXIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNN 327
+ P F L +YL N++++L + L L L L++N
Sbjct: 185 QNHVARVHPHAFRDLGRLMTLYLFANNLSMLPAEVLVPLRSLQYLRLNDN 234
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 82.4 bits (202), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 69/284 (24%), Positives = 118/284 (41%), Gaps = 60/284 (21%)
Query: 194 SYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQ 253
+ L+L NK++ + F N NL L L NN + F+ L +L+ LYL
Sbjct: 55 ALLDLQNNKITEIKDGDFKNLK------NLHTLILINNKISKISPGAFAPLVKLERLYLS 108
Query: 254 GNILTFLADHALDGXXXXXXXXXXXXXXXXIPPELFNQSRDLKEVYLQNNSINVLAPGIF 313
N L L + + L+E+ + N I + +F
Sbjct: 109 KNQLKELPE---------------------------KMPKTLQELRVHENEITKVRKSVF 141
Query: 314 NVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLH 373
N L Q+IV++L N L + F G+ +L + IA
Sbjct: 142 NGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIA---------------------- 179
Query: 374 LENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEEN 433
+ I +I + SL+ LH + NK+ ++++ SL L L+ L L N + ++
Sbjct: 180 --DTNITTIPQGLPPSLTELH---LDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNG 234
Query: 434 ALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEI 477
+L N+ L++ HLN NKL ++P L + ++ + L +N I+ I
Sbjct: 235 SLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAI 278
Score = 79.3 bits (194), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/232 (29%), Positives = 112/232 (48%), Gaps = 10/232 (4%)
Query: 321 VLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIE 380
+LDL NN++TE + F L L L + NK++K+ F L +L+ L+L NQ++
Sbjct: 56 LLDLQNNKITE--IKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 113
Query: 381 SIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEY--IEENALKNS 438
+ +L L + N++ ++ + + L + V+ L N L+ IE A +
Sbjct: 114 ELPEKMPKTLQELR---VHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM 170
Query: 439 TSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNI 498
L + +T IP+ L SL L L N IT+++ SL L+ LA L L+ N+I
Sbjct: 171 KKLSYIRIADTNITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI 228
Query: 499 SNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIG 550
S + G L L+L +NK+ KV G D+ + + L N ++ IG
Sbjct: 229 SAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKY-IQVVYLHNNNISAIG 279
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 67/150 (44%), Gaps = 12/150 (8%)
Query: 768 TCPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRK 827
CP C C+ V+ CS G + ++P +P D L L N+I + F K
Sbjct: 24 VCPFRCQCH------LRVVQCSDLGLE-KVPKDLPPDTALLDLQNNKITEIKDGDFKNLK 76
Query: 828 KLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERL-ENLRELYLQYNK 886
L L L ++ + I F L +L L L N+L E+ E++ + L+EL + N+
Sbjct: 77 NLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP----EKMPKTLQELRVHENE 132
Query: 887 IIYISNRTFLSLTHLKVLQLDHNRITSFAV 916
I + F L + V++L N + S +
Sbjct: 133 ITKVRKSVFNGLNQMIVVELGTNPLKSSGI 162
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/236 (23%), Positives = 95/236 (40%), Gaps = 39/236 (16%)
Query: 177 NSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSL 236
N I + D F L++L L L NK+S ++ +F+ + L L LS N L
Sbjct: 62 NKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPL------VKLERLYLSKNQLKEL 115
Query: 237 PAEGFSRLSRLQELYLQGNILTFLADHALDG--XXXXXXXXXXXXXXXXIPPELFNQSRD 294
P + LQEL + N +T + +G I F +
Sbjct: 116 PEK---MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK 172
Query: 295 LKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNK 354
L + + + +I + G+ LT+L L N++T+ V+AA+ GL+ L L +++N
Sbjct: 173 LSYIRIADTNITTIPQGLPPSLTEL---HLDGNKITK--VDAASLKGLNNLAKLGLSFNS 227
Query: 355 MNKLDSSIFK-----------------------DLYRLQVLHLENNQIESIHRNTF 387
++ +D+ D +QV++L NN I +I N F
Sbjct: 228 ISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDF 283
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 7/121 (5%)
Query: 796 QLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVET--IHNKTFNGLKEL 853
+LP ++P EL + N I V F G ++ ++ L ++ +++ I N F G+K+L
Sbjct: 114 ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKL 173
Query: 854 IILRLDDNRLTEI-RGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRIT 912
+R+ D +T I +G +L EL+L NKI + + L +L L L N I+
Sbjct: 174 SYIRIADTNITTIPQGLP----PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS 229
Query: 913 S 913
+
Sbjct: 230 A 230
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 50/99 (50%), Gaps = 1/99 (1%)
Query: 797 LPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIIL 856
+P +P TEL+LDGN+I V + S G L L L+ + + + N + L L
Sbjct: 186 IPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLREL 245
Query: 857 RLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTF 895
L++N+L ++ G + + ++ +YL N I I + F
Sbjct: 246 HLNNNKLVKVPGGLADH-KYIQVVYLHNNNISAIGSNDF 283
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 80/189 (42%), Gaps = 6/189 (3%)
Query: 489 AGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTD 548
A L L N I+ I G F+ L L L L +NKI K+ G F L + L N L +
Sbjct: 55 ALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE 114
Query: 549 IGGLFPKLPNLVWLNISENLLEWFDYALIPADLQWL--DIHGNQISELG-NYFEIESQLR 605
+ PK L L + EN + ++ Q + ++ N + G + +
Sbjct: 115 LPEKMPK--TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK 172
Query: 606 LTYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNI 665
L+Y + +T + +P S+ L L N I+KV + NL ++ L N + +
Sbjct: 173 LSYIRIADTNITTIP-QGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAV 231
Query: 666 NQTALRISP 674
+ +L +P
Sbjct: 232 DNGSLANTP 240
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 82.4 bits (202), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 69/284 (24%), Positives = 118/284 (41%), Gaps = 60/284 (21%)
Query: 194 SYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQ 253
+ L+L NK++ + F N NL L L NN + F+ L +L+ LYL
Sbjct: 55 ALLDLQNNKITEIKDGDFKNLK------NLHTLILINNKISKISPGAFAPLVKLERLYLS 108
Query: 254 GNILTFLADHALDGXXXXXXXXXXXXXXXXIPPELFNQSRDLKEVYLQNNSINVLAPGIF 313
N L L + + L+E+ + N I + +F
Sbjct: 109 KNQLKELPE---------------------------KMPKTLQELRVHENEITKVRKSVF 141
Query: 314 NVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLH 373
N L Q+IV++L N L + F G+ +L + IA
Sbjct: 142 NGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIA---------------------- 179
Query: 374 LENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEEN 433
+ I +I + SL+ LH + NK+ ++++ SL L L+ L L N + ++
Sbjct: 180 --DTNITTIPQGLPPSLTELH---LDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNG 234
Query: 434 ALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEI 477
+L N+ L++ HLN NKL ++P L + ++ + L +N I+ I
Sbjct: 235 SLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAI 278
Score = 79.3 bits (194), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/232 (29%), Positives = 112/232 (48%), Gaps = 10/232 (4%)
Query: 321 VLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIE 380
+LDL NN++TE + F L L L + NK++K+ F L +L+ L+L NQ++
Sbjct: 56 LLDLQNNKITE--IKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 113
Query: 381 SIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEY--IEENALKNS 438
+ +L L + N++ ++ + + L + V+ L N L+ IE A +
Sbjct: 114 ELPEKMPKTLQELR---VHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM 170
Query: 439 TSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNI 498
L + +T IP+ L SL L L N IT+++ SL L+ LA L L+ N+I
Sbjct: 171 KKLSYIRIADTNITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI 228
Query: 499 SNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIG 550
S + G L L+L +NK+ KV G D+ + + L N ++ IG
Sbjct: 229 SAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKY-IQVVYLHNNNISAIG 279
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 67/150 (44%), Gaps = 12/150 (8%)
Query: 768 TCPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRK 827
CP C C+ V+ CS G + ++P +P D L L N+I + F K
Sbjct: 24 VCPFRCQCH------LRVVQCSDLGLE-KVPKDLPPDTALLDLQNNKITEIKDGDFKNLK 76
Query: 828 KLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERL-ENLRELYLQYNK 886
L L L ++ + I F L +L L L N+L E+ E++ + L+EL + N+
Sbjct: 77 NLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP----EKMPKTLQELRVHENE 132
Query: 887 IIYISNRTFLSLTHLKVLQLDHNRITSFAV 916
I + F L + V++L N + S +
Sbjct: 133 ITKVRKSVFNGLNQMIVVELGTNPLKSSGI 162
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/236 (23%), Positives = 95/236 (40%), Gaps = 39/236 (16%)
Query: 177 NSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSL 236
N I + D F L++L L L NK+S ++ +F+ + L L LS N L
Sbjct: 62 NKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPL------VKLERLYLSKNQLKEL 115
Query: 237 PAEGFSRLSRLQELYLQGNILTFLADHALDG--XXXXXXXXXXXXXXXXIPPELFNQSRD 294
P + LQEL + N +T + +G I F +
Sbjct: 116 PEK---MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK 172
Query: 295 LKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNK 354
L + + + +I + G+ LT+L L N++T+ V+AA+ GL+ L L +++N
Sbjct: 173 LSYIRIADTNITTIPQGLPPSLTEL---HLDGNKITK--VDAASLKGLNNLAKLGLSFNS 227
Query: 355 MNKLDSSIFK-----------------------DLYRLQVLHLENNQIESIHRNTF 387
++ +D+ D +QV++L NN I +I N F
Sbjct: 228 ISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDF 283
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 7/121 (5%)
Query: 796 QLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVET--IHNKTFNGLKEL 853
+LP ++P EL + N I V F G ++ ++ L ++ +++ I N F G+K+L
Sbjct: 114 ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKL 173
Query: 854 IILRLDDNRLTEI-RGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRIT 912
+R+ D +T I +G +L EL+L NKI + + L +L L L N I+
Sbjct: 174 SYIRIADTNITTIPQGLP----PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS 229
Query: 913 S 913
+
Sbjct: 230 A 230
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 50/99 (50%), Gaps = 1/99 (1%)
Query: 797 LPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIIL 856
+P +P TEL+LDGN+I V + S G L L L+ + + + N + L L
Sbjct: 186 IPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLREL 245
Query: 857 RLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTF 895
L++N+L ++ G + + ++ +YL N I I + F
Sbjct: 246 HLNNNKLVKVPGGLADH-KYIQVVYLHNNNISAIGSNDF 283
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 80/189 (42%), Gaps = 6/189 (3%)
Query: 489 AGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTD 548
A L L N I+ I G F+ L L L L +NKI K+ G F L + L N L +
Sbjct: 55 ALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE 114
Query: 549 IGGLFPKLPNLVWLNISENLLEWFDYALIPADLQWL--DIHGNQISELG-NYFEIESQLR 605
+ PK L L + EN + ++ Q + ++ N + G + +
Sbjct: 115 LPEKMPK--TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK 172
Query: 606 LTYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNI 665
L+Y + +T + +P S+ L L N I+KV + NL ++ L N + +
Sbjct: 173 LSYIRIADTNITTIP-QGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAV 231
Query: 666 NQTALRISP 674
+ +L +P
Sbjct: 232 DNGSLANTP 240
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 80.9 bits (198), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 89/181 (49%), Gaps = 10/181 (5%)
Query: 769 CPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKK 828
CP+ C+C +DC + + + +P IP +A LYL N+I + F
Sbjct: 13 CPSQCSC------SGTTVDCRSKRHAS-VPAGIPTNAQILYLHDNQITKLEPGVFDSLIN 65
Query: 829 LQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKII 888
L+ L+L S+ + + F+ L +L +L L N+LT + F+RL +L+EL++ NK+
Sbjct: 66 LKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT 125
Query: 889 YISNRTFLSLTHLKVLQLDHNRITSF--AVWHLSSQIQSITLTSNPWSCDCDFTEKFRDY 946
+ R LTHL L LD N++ S + S + L NPW C+C R++
Sbjct: 126 ELP-RGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECRDIMYLRNW 184
Query: 947 L 947
+
Sbjct: 185 V 185
Score = 67.0 bits (162), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 80/186 (43%), Gaps = 33/186 (17%)
Query: 370 QVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEY 429
Q+L+L +NQI + F SL NL L + +N+L + DSLT L+VL L N+L
Sbjct: 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV 102
Query: 430 IEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLA 489
+ L++ + NKLTE+P+ + L L
Sbjct: 103 LPSAVFDRLVHLKELFMCCNKLTELPR------------------------GIERLTHLT 138
Query: 490 GLRLTENNISNISKGVFEKLSVLTILNLASNK-------IQKVEAGTFDNNSNLVAIRLD 542
L L +N + +I G F++LS LT L N I + D+ S +A+R D
Sbjct: 139 HLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECRDIMYLRNWVADHTS--IAMRWD 196
Query: 543 GNYLTD 548
G + D
Sbjct: 197 GKAVND 202
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 65/116 (56%), Gaps = 4/116 (3%)
Query: 286 PELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRL 345
P +F+ +LKE+YL +N + L G+F+ LTQL VLDL N+LT + +A F L L
Sbjct: 57 PGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV--LPSAVFDRLVHL 114
Query: 346 VVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNL-HTLIMSN 400
L + NK+ +L I + L L L L+ NQ++SI F LS+L H + N
Sbjct: 115 KELFMCCNKLTELPRGIER-LTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169
Score = 60.1 bits (144), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 65/121 (53%), Gaps = 3/121 (2%)
Query: 298 VYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNK 357
+YL +N I L PG+F+ L L L L +N+L + F L +L VL++ N++
Sbjct: 45 LYLHDNQITKLEPGVFDSLINLKELYLGSNQLGA--LPVGVFDSLTQLTVLDLGTNQLTV 102
Query: 358 LDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTAL 417
L S++F L L+ L + N++ + R L++L L + N+LK I + D L++L
Sbjct: 103 LPSAVFDRLVHLKELFMCCNKLTELPRG-IERLTHLTHLALDQNQLKSIPHGAFDRLSSL 161
Query: 418 S 418
+
Sbjct: 162 T 162
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 57/106 (53%)
Query: 465 KTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQK 524
+ L L DN IT++ +SL L L L N + + GVF+ L+ LT+L+L +N++
Sbjct: 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV 102
Query: 525 VEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLE 570
+ + FD +L + + N LT++ +L +L L + +N L+
Sbjct: 103 LPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLK 148
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 66/124 (53%), Gaps = 3/124 (2%)
Query: 439 TSLQDFHLNGNKLTEI-PKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENN 497
T+ Q +L+ N++T++ P V +L +LK L LG N + + +SL QL L L N
Sbjct: 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99
Query: 498 ISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIG-GLFPKL 556
++ + VF++L L L + NK+ ++ G + ++L + LD N L I G F +L
Sbjct: 100 LTVLPSAVFDRLVHLKELFMCCNKLTELPRG-IERLTHLTHLALDQNQLKSIPHGAFDRL 158
Query: 557 PNLV 560
+L
Sbjct: 159 SSLT 162
Score = 37.4 bits (85), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 49/127 (38%), Gaps = 7/127 (5%)
Query: 177 NSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSL 236
N I L +F L +L L L N+L + F + L VLDL N L
Sbjct: 50 NQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSL------TQLTVLDLGTNQLTVL 103
Query: 237 PAEGFSRLSRLQELYLQGNILTFLADHALDGXXXXXXXXXXXXXXXXIPPELFNQSRDLK 296
P+ F RL L+EL++ N LT L ++ IP F++ L
Sbjct: 104 PSAVFDRLVHLKELFMCCNKLTELP-RGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLT 162
Query: 297 EVYLQNN 303
YL N
Sbjct: 163 HAYLFGN 169
Score = 33.1 bits (74), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 66/147 (44%), Gaps = 33/147 (22%)
Query: 575 ALIPADLQWLDIHGNQISELG--------NYFEI---------------ESQLRLTYFDA 611
A IP + Q L +H NQI++L N E+ +S +LT D
Sbjct: 36 AGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDL 95
Query: 612 SSNKLTELTGNAIPHSV--ENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTA 669
+N+LT L V + LF+ N ++++ P +LT + L N+LK+I A
Sbjct: 96 GTNQLTVLPSAVFDRLVHLKELFMCCNKLTEL-PRGIERLTHLTHLALDQNQLKSIPHGA 154
Query: 670 L-RISPLPSHKNIPDFYIGENPFQCDC 695
R+S L +H Y+ NP+ C+C
Sbjct: 155 FDRLSSL-THA-----YLFGNPWDCEC 175
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 89/190 (46%), Gaps = 9/190 (4%)
Query: 769 CPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKK 828
CP+ C+C ++C + G + +P IP T L L+ N + + + F
Sbjct: 1 CPSRCSC------SGTTVECYSQGRTS-VPTGIPAQTTYLDLETNSLKSLPNGVFDELTS 53
Query: 829 LQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKII 888
L L+L + ++++ N FN L L L L N+L + F++L L+EL L N++
Sbjct: 54 LTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQ 113
Query: 889 YISNRTFLSLTHLKVLQLDHNRITSF--AVWHLSSQIQSITLTSNPWSCDCDFTEKFRDY 946
+ + F LT LK L+L N++ S V+ + +Q I L NPW C C ++
Sbjct: 114 SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEW 173
Query: 947 LQRSRSSVHD 956
+ + V +
Sbjct: 174 INKHSGVVRN 183
Score = 63.9 bits (154), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 68/126 (53%), Gaps = 1/126 (0%)
Query: 348 LNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIE 407
L++ N + L + +F +L L L+L N+++S+ F L++L L +S N+L+ +
Sbjct: 33 LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLP 92
Query: 408 SNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIP-KVLRNLHSLKT 466
+ D LT L L+L+ N+L+ + + T L+D L N+L +P V L SL+
Sbjct: 93 NGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQY 152
Query: 467 LDLGDN 472
+ L DN
Sbjct: 153 IWLHDN 158
Score = 60.1 bits (144), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 62/136 (45%), Gaps = 2/136 (1%)
Query: 314 NVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLH 373
+ Q LDL N L + F L L L + NK+ L + +F L L L+
Sbjct: 25 GIPAQTTYLDLETNSLKS--LPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLN 82
Query: 374 LENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEEN 433
L NQ++S+ F L+ L L ++ N+L+ + D LT L L L N+L+ + +
Sbjct: 83 LSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDG 142
Query: 434 ALKNSTSLQDFHLNGN 449
TSLQ L+ N
Sbjct: 143 VFDRLTSLQYIWLHDN 158
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 63/118 (53%), Gaps = 2/118 (1%)
Query: 284 IPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLH 343
+P +F++ L ++YL N + L G+FN LT L L+LS N+L + + F L
Sbjct: 43 LPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL--QSLPNGVFDKLT 100
Query: 344 RLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNN 401
+L L + N++ L +F L +L+ L L NQ++S+ F L++L + + +N
Sbjct: 101 QLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158
Score = 57.4 bits (137), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 64/124 (51%), Gaps = 4/124 (3%)
Query: 444 FHLNGNKLTEIPK-VLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNIS 502
L N L +P V L SL L LG N + + N N L L L L+ N + ++
Sbjct: 33 LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLP 92
Query: 503 KGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDI-GGLFPKLPNL-- 559
GVF+KL+ L L L +N++Q + G FD + L +RL N L + G+F +L +L
Sbjct: 93 NGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQY 152
Query: 560 VWLN 563
+WL+
Sbjct: 153 IWLH 156
Score = 57.4 bits (137), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 64/136 (47%), Gaps = 6/136 (4%)
Query: 177 NSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSL 236
NS+ +LP+ +F L SL+ L L NKL ++ F+ +L L+LS N SL
Sbjct: 38 NSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKL------TSLTYLNLSTNQLQSL 91
Query: 237 PAEGFSRLSRLQELYLQGNILTFLADHALDGXXXXXXXXXXXXXXXXIPPELFNQSRDLK 296
P F +L++L+EL L N L L D D +P +F++ L+
Sbjct: 92 PNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQ 151
Query: 297 EVYLQNNSINVLAPGI 312
++L +N + PGI
Sbjct: 152 YIWLHDNPWDCTCPGI 167
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 49/104 (47%)
Query: 226 LDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGXXXXXXXXXXXXXXXXIP 285
LDL NS SLP F L+ L +LYL GN L L + + +P
Sbjct: 33 LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLP 92
Query: 286 PELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNEL 329
+F++ LKE+ L N + L G+F+ LTQL L L N+L
Sbjct: 93 NGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQL 136
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 65/126 (51%), Gaps = 3/126 (2%)
Query: 467 LDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVE 526
LDL N + + N + L L L L N + ++ GVF KL+ LT LNL++N++Q +
Sbjct: 33 LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLP 92
Query: 527 AGTFDNNSNLVAIRLDGNYLTDI-GGLFPKLPNLVWLNISENLLEWFDYALIP--ADLQW 583
G FD + L + L+ N L + G+F KL L L + +N L+ + LQ+
Sbjct: 93 NGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQY 152
Query: 584 LDIHGN 589
+ +H N
Sbjct: 153 IWLHDN 158
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 487 QLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYL 546
Q L L N++ ++ GVF++L+ LT L L NK+Q + G F+ ++L + L N L
Sbjct: 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL 88
Query: 547 TDI-GGLFPKLPNLVWLNISENLLE 570
+ G+F KL L L ++ N L+
Sbjct: 89 QSLPNGVFDKLTQLKELALNTNQLQ 113
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/203 (31%), Positives = 91/203 (44%), Gaps = 38/203 (18%)
Query: 769 CPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKK 828
CP C C E +DC+ G ++P IP+ TEL L+ N + + S GR
Sbjct: 2 CPAMCHC------EGTTVDCTGRGL-KEIPRDIPLHTTELLLNDNELGRISSDGLFGR-- 52
Query: 829 LQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKII 888
L L+ L L N+LT I FE +++EL L NKI
Sbjct: 53 ---------------------LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91
Query: 889 YISNRTFLSLTHLKVLQLDHNRITSF---AVWHLSSQIQSITLTSNPWSCDCDFTEKFRD 945
ISN+ FL L LK L L N+I+ + HL+S + S+ L SNP++C+C F +
Sbjct: 92 EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNS-LTSLNLASNPFNCNCHLA-WFAE 149
Query: 946 YLQRSRSSVHDISQIRCMTGSEV 968
+L R + RC S+V
Sbjct: 150 WL---RKKSLNGGAARCGAPSKV 169
Score = 63.2 bits (152), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 67/131 (51%), Gaps = 26/131 (19%)
Query: 393 LHT--LIMSNNKLKRIESNSL-DSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGN 449
LHT L++++N+L RI S+ L L L L L N+L IE NA + ++ +Q+
Sbjct: 29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQE------ 82
Query: 450 KLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKL 509
L LG+N I EI+N LHQL L L +N IS + G FE L
Sbjct: 83 -----------------LQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHL 125
Query: 510 SVLTILNLASN 520
+ LT LNLASN
Sbjct: 126 NSLTSLNLASN 136
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 61/106 (57%), Gaps = 3/106 (2%)
Query: 297 EVYLQNNSIN-VLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKM 355
E+ L +N + + + G+F L L+ L+L N+LT NA F G + L + NK+
Sbjct: 33 ELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNA--FEGASHIQELQLGENKI 90
Query: 356 NKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNN 401
++ + +F L++L+ L+L +NQI + +F L++L +L +++N
Sbjct: 91 KEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 1/98 (1%)
Query: 353 NKMNKLDS-SIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSL 411
N++ ++ S +F L L L L+ NQ+ I N F S++ L + NK+K I +
Sbjct: 39 NELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMF 98
Query: 412 DSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGN 449
L L L+L +N++ + + ++ SL +L N
Sbjct: 99 LGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 49/101 (48%), Gaps = 2/101 (1%)
Query: 446 LNGNKLTEIPK--VLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISK 503
LN N+L I + L L L+L N +T I + + L+L EN I IS
Sbjct: 36 LNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISN 95
Query: 504 GVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGN 544
+F L L LNL N+I V G+F++ ++L ++ L N
Sbjct: 96 KMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 39.7 bits (91), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 61/133 (45%), Gaps = 10/133 (7%)
Query: 448 GNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSL-NSLHQLAGLRLTENNISNISKGVF 506
G L EIP+ + LH+ + L L DN + I++ L L L L L N ++ I F
Sbjct: 17 GRGLKEIPRDIP-LHTTELL-LNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAF 74
Query: 507 EKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDI-GGLFPKLPNLVWLNIS 565
E S + L L NKI+++ F L + L N ++ + G F L +L LN++
Sbjct: 75 EGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLA 134
Query: 566 ENL------LEWF 572
N L WF
Sbjct: 135 SNPFNCNCHLAWF 147
Score = 32.3 bits (72), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 57/162 (35%), Gaps = 54/162 (33%)
Query: 551 GLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFD 610
GLF +LP+LV L + N L + N FE S ++
Sbjct: 48 GLFGRLPHLVKLELKRNQLTGIEP---------------------NAFEGASHIQ--ELQ 84
Query: 611 ASSNKLTELTGNAIP--HSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQT 668
NK+ E++ H ++ L L +N IS V P +F +LT ++L
Sbjct: 85 LGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLA---------- 134
Query: 669 ALRISPLPSHKNIPDFYIGENPFQCDCNMQWLQSYSVNKERN 710
NPF C+C++ W + K N
Sbjct: 135 -------------------SNPFNCNCHLAWFAEWLRKKSLN 157
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/203 (33%), Positives = 105/203 (51%), Gaps = 4/203 (1%)
Query: 347 VLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRI 406
+LN+ N++ + + FK L L++L L N I +I F L+NL+TL + +N+L I
Sbjct: 68 LLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTI 127
Query: 407 ESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNG-NKLTEIPK-VLRNLHSL 464
+ + L+ L L L NN +E I A SL+ L +L+ I + L +L
Sbjct: 128 PNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNL 187
Query: 465 KTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQK 524
+ L+L + EI NL+ L +L L L+ N++S I G F+ L L L + ++IQ
Sbjct: 188 RYLNLAMCNLREIPNLT--PLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQV 245
Query: 525 VEAGTFDNNSNLVAIRLDGNYLT 547
+E FDN +LV I L N LT
Sbjct: 246 IERNAFDNLQSLVEINLAHNNLT 268
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 73/147 (49%), Gaps = 5/147 (3%)
Query: 768 TCPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRK 827
TCP+ C+C + S + C ++P I + L L N+I ++ +SF +
Sbjct: 34 TCPSVCSCSNQFS----KVICVRKNL-REVPDGISTNTRLLNLHENQIQIIKVNSFKHLR 88
Query: 828 KLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKI 887
L+IL L+ +H+ TI FNGL L L L DNRLT I F L L+EL+L+ N I
Sbjct: 89 HLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPI 148
Query: 888 IYISNRTFLSLTHLKVLQLDHNRITSF 914
I + F + L+ L L + S+
Sbjct: 149 ESIPSYAFNRIPSLRRLDLGELKRLSY 175
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 91/227 (40%), Gaps = 25/227 (11%)
Query: 222 NLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGXXXXXXXXXXXXXX 281
N R+L+L N + F L L+ L L N + + A +G
Sbjct: 65 NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL 124
Query: 282 XXIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTE-EWVNAATFS 340
IP F LKE++L+NN I + FN + L LDL EL +++ F
Sbjct: 125 TTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLG--ELKRLSYISEGAFE 182
Query: 341 GLHRLVVLNIAY----------------------NKMNKLDSSIFKDLYRLQVLHLENNQ 378
GL L LN+A N ++ + F+ L LQ L + +Q
Sbjct: 183 GLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQ 242
Query: 379 IESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNN 425
I+ I RN F +L +L + +++N L + + L L + L +N
Sbjct: 243 IQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 76/161 (47%), Gaps = 4/161 (2%)
Query: 391 SNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNK 450
+N L + N+++ I+ NS L L +L L N + IE A +L L N+
Sbjct: 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123
Query: 451 LTEIPK-VLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTE-NNISNISKGVFEK 508
LT IP L LK L L +N I I + + N + L L L E +S IS+G FE
Sbjct: 124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEG 183
Query: 509 LSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDI 549
LS L LNLA ++++ L + L GN+L+ I
Sbjct: 184 LSNLRYLNLAMCNLREIP--NLTPLIKLDELDLSGNHLSAI 222
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 65/237 (27%), Positives = 108/237 (45%), Gaps = 32/237 (13%)
Query: 491 LRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDI- 549
L L EN I I F+ L L IL L+ N I+ +E G F+ +NL + L N LT I
Sbjct: 69 LNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIP 128
Query: 550 GGLFPKLPNLVWLNISENLLEW---FDYALIPADLQWLDIHG----NQISELGNYFEIES 602
G F L L L + N +E + + IP+ L+ LD+ + ISE FE S
Sbjct: 129 NGAFVYLSKLKELWLRNNPIESIPSYAFNRIPS-LRRLDLGELKRLSYISE--GAFEGLS 185
Query: 603 QLRLTYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRL 662
LR Y + + L E+ ++ L L+ N +S ++P +F +L ++ ++ +++
Sbjct: 186 NLR--YLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQI 243
Query: 663 KNINQTAL--------------RISPLPSHKNIP-----DFYIGENPFQCDCNMQWL 700
+ I + A ++ LP P ++ NP+ C+C++ WL
Sbjct: 244 QVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDILWL 300
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 22/112 (19%)
Query: 828 KLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKI 887
KL L L+ +H+ I +F GL L L + +++ I F+ L++L E+ L +N +
Sbjct: 208 KLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNL 267
Query: 888 IYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSSQIQSITLTSNPWSCDCDF 939
+ + F L HL+ + L H NPW+C+CD
Sbjct: 268 TLLPHDLFTPLHHLERIHLHH----------------------NPWNCNCDI 297
Score = 31.2 bits (69), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 77/207 (37%), Gaps = 71/207 (34%)
Query: 514 ILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIG-GLFPKLPNLVWLNISENLLEWF 572
+LNL N+IQ ++ +F + +L ++L N++ I G F L NL N LE F
Sbjct: 68 LLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANL-------NTLELF 120
Query: 573 DYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPH--SVEN 630
D N+LT + A + ++
Sbjct: 121 D----------------------------------------NRLTTIPNGAFVYLSKLKE 140
Query: 631 LFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHKNIPDFYIGENP 690
L+L NN I + Y F P+L R+DL LK ++ YI E
Sbjct: 141 LWLRNNPIESIPSYAFNRIPSLRRLDL--GELKRLS------------------YISEGA 180
Query: 691 FQCDCNMQWLQSYSVNKERNKPNLVDL 717
F+ N+++L N R PNL L
Sbjct: 181 FEGLSNLRYLNLAMCNL-REIPNLTPL 206
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 77.4 bits (189), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 95/188 (50%), Gaps = 11/188 (5%)
Query: 767 MTCPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGR 826
+ CP C C E +DCS N++P IP EL L+ N V+ + +
Sbjct: 3 LACPEKCRC------EGTTVDCSNQKL-NKIPEHIPQYTAELRLNNNEFTVLEATGIFKK 55
Query: 827 -KKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYN 885
+L+ + +++ + I F G + + L NRL ++ F+ LE+L+ L L+ N
Sbjct: 56 LPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSN 115
Query: 886 KIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSS--QIQSITLTSNPWSCDCDFTEKF 943
+I + N +F+ L+ +++L L N+IT+ A + + ++ L +NP++C+C +
Sbjct: 116 RITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNC-YLAWL 174
Query: 944 RDYLQRSR 951
++L++ R
Sbjct: 175 GEWLRKKR 182
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 70/127 (55%), Gaps = 3/127 (2%)
Query: 297 EVYLQNNSINVL-APGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKM 355
E+ L NN VL A GIF L QL ++ SNN++T+ + F G + + + N++
Sbjct: 36 ELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITD--IEEGAFEGASGVNEILLTSNRL 93
Query: 356 NKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLT 415
+ +FK L L+ L L +N+I + ++F LS++ L + +N++ + + D+L
Sbjct: 94 ENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLH 153
Query: 416 ALSVLSL 422
+LS L+L
Sbjct: 154 SLSTLNL 160
Score = 60.5 bits (145), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 69/127 (54%), Gaps = 2/127 (1%)
Query: 396 LIMSNNKLKRIESNSL-DSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEI 454
L ++NN+ +E+ + L L ++ NN++ IEE A + ++ + + L N+L +
Sbjct: 37 LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENV 96
Query: 455 P-KVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLT 513
K+ + L SLKTL L N IT + N S L + L L +N I+ ++ G F+ L L+
Sbjct: 97 QHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLS 156
Query: 514 ILNLASN 520
LNL +N
Sbjct: 157 TLNLLAN 163
Score = 53.9 bits (128), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 60/111 (54%), Gaps = 1/111 (0%)
Query: 360 SSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSV 419
+ IFK L +L+ ++ NN+I I F S ++ +++++N+L+ ++ L +L
Sbjct: 50 TGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKT 109
Query: 420 LSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEI-PKVLRNLHSLKTLDL 469
L L +N + + ++ +S++ L N++T + P LHSL TL+L
Sbjct: 110 LMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNL 160
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 72/153 (47%), Gaps = 6/153 (3%)
Query: 418 SVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLT--EIPKVLRNLHSLKTLDLGDNLIT 475
+ + N +L I E+ + + L+ LN N+ T E + + L L+ ++ +N IT
Sbjct: 14 TTVDCSNQKLNKIPEHIPQYTAELR---LNNNEFTVLEATGIFKKLPQLRKINFSNNKIT 70
Query: 476 EINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSN 535
+I + + + LT N + N+ +F+ L L L L SN+I V +F S+
Sbjct: 71 DIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSS 130
Query: 536 LVAIRLDGNYLTDIG-GLFPKLPNLVWLNISEN 567
+ + L N +T + G F L +L LN+ N
Sbjct: 131 VRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 54/109 (49%), Gaps = 2/109 (1%)
Query: 288 LFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVV 347
+F + L+++ NN I + G F + + + L++N L E V F GL L
Sbjct: 52 IFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRL--ENVQHKMFKGLESLKT 109
Query: 348 LNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTL 396
L + N++ + + F L +++L L +NQI ++ F +L +L TL
Sbjct: 110 LMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTL 158
Score = 37.0 bits (84), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 49/216 (22%), Positives = 82/216 (37%), Gaps = 74/216 (34%)
Query: 489 AGLRLTENNISNI-SKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLT 547
A LRL N + + + G+F+KL L +N ++NKI +E G F+ S + I L N L
Sbjct: 35 AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE 94
Query: 548 DIGGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLT 607
N+ + + + L+ L + N+I+ +GN +S + L+
Sbjct: 95 ---------------NVQHKMFKGLE------SLKTLMLRSNRITCVGN----DSFIGLS 129
Query: 608 YFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQ 667
SV L L +N I+ V P F +L+ ++L+ N
Sbjct: 130 -------------------SVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN------- 163
Query: 668 TALRISPLPSHKNIPDFYIGENPFQCDCNMQWLQSY 703
PF C+C + WL +
Sbjct: 164 ----------------------PFNCNCYLAWLGEW 177
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 75.5 bits (184), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 100/200 (50%), Gaps = 13/200 (6%)
Query: 767 MTCPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGR 826
+ CP CTC + N++DC G ++P +P TE+ L+ N I V+ +F
Sbjct: 3 LHCPAACTCSN------NIVDCRGKGL-TEIPTNLPETITEIRLEQNTIKVIPPGAFSPY 55
Query: 827 KKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNK 886
KKL+ + L+++ + + F GL+ L L L N++TE+ FE L +L+ L L NK
Sbjct: 56 KKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANK 115
Query: 887 IIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSS--QIQSITLTSNPWSCDCDFTEKFR 944
I + F L +L +L L N++ + A S IQ++ L NP+ CDC +
Sbjct: 116 INXLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHL-KWLA 174
Query: 945 DYLQRSRSSVHDISQIRCMT 964
DYL ++ + S RC +
Sbjct: 175 DYLH---TNPIETSGARCTS 191
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 76/136 (55%), Gaps = 2/136 (1%)
Query: 290 NQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLN 349
N + E+ L+ N+I V+ PG F+ +L +DLSNN+++E +A F GL L L
Sbjct: 29 NLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDA--FQGLRSLNSLV 86
Query: 350 IAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESN 409
+ NK+ +L S+F+ L+ LQ+L L N+I + + F L NL+ L + +NKL+ I
Sbjct: 87 LYGNKITELPKSLFEGLFSLQLLLLNANKINXLRVDAFQDLHNLNLLSLYDNKLQTIAKG 146
Query: 410 SLDSLTALSVLSLDNN 425
+ L A+ + L N
Sbjct: 147 TFSPLRAIQTMHLAQN 162
Score = 64.3 bits (155), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 68/118 (57%), Gaps = 2/118 (1%)
Query: 284 IPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLH 343
IPP F+ + L+ + L NN I+ LAP F L L L L N++TE + + F GL
Sbjct: 47 IPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITE--LPKSLFEGLF 104
Query: 344 RLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNN 401
L +L + NK+N L F+DL+ L +L L +N++++I + TF+ L + T+ ++ N
Sbjct: 105 SLQLLLLNANKINXLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 58/137 (42%), Gaps = 6/137 (4%)
Query: 191 QSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQEL 250
++++ + L QN + + +FS Y LR +DLSNN L + F L L L
Sbjct: 32 ETITEIRLEQNTIKVIPPGAFSPYK------KLRRIDLSNNQISELAPDAFQGLRSLNSL 85
Query: 251 YLQGNILTFLADHALDGXXXXXXXXXXXXXXXXIPPELFNQSRDLKEVYLQNNSINVLAP 310
L GN +T L +G + + F +L + L +N + +A
Sbjct: 86 VLYGNKITELPKSLFEGLFSLQLLLLNANKINXLRVDAFQDLHNLNLLSLYDNKLQTIAK 145
Query: 311 GIFNVLTQLIVLDLSNN 327
G F+ L + + L+ N
Sbjct: 146 GTFSPLRAIQTMHLAQN 162
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 63/129 (48%), Gaps = 4/129 (3%)
Query: 403 LKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEI-PKVLRNL 461
L I +N +++T + L+ N ++ I A L+ L+ N+++E+ P + L
Sbjct: 23 LTEIPTNLPETITEIR---LEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGL 79
Query: 462 HSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNK 521
SL +L L N ITE+ L L L L N I+ + F+ L L +L+L NK
Sbjct: 80 RSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINXLRVDAFQDLHNLNLLSLYDNK 139
Query: 522 IQKVEAGTF 530
+Q + GTF
Sbjct: 140 LQTIAKGTF 148
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 83/182 (45%), Gaps = 28/182 (15%)
Query: 533 NSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYALIPA-------DLQWLD 585
++N+V R G LT+I P+ I+E LE +IP L+ +D
Sbjct: 12 SNNIVDCR--GKGLTEIPTNLPE-------TITEIRLEQNTIKVIPPGAFSPYKKLRRID 62
Query: 586 IHGNQISELG-NYFE-IESQLRLTYFDASSNKLTELTGNAIPHSVENLFLTNNL--ISKV 641
+ NQISEL + F+ + S L + NK+TEL + L N I+ +
Sbjct: 63 LSNNQISELAPDAFQGLRSLNSLVLY---GNKITELPKSLFEGLFSLQLLLLNANKINXL 119
Query: 642 QPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHKNIPDFYIGENPFQCDCNMQWLQ 701
+ F NL + L N+L+ I + SPL + I ++ +NPF CDC+++WL
Sbjct: 120 RVDAFQDLHNLNLLSLYDNKLQTIAKGTF--SPL---RAIQTMHLAQNPFICDCHLKWLA 174
Query: 702 SY 703
Y
Sbjct: 175 DY 176
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 71/160 (44%), Gaps = 10/160 (6%)
Query: 440 SLQDFHLNGNKLTEIPK-VLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNI 498
++ + L N + IP L+ +DL +N I+E+ + L L L L N I
Sbjct: 33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92
Query: 499 SNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIG-GLFPKLP 557
+ + K +FE L L +L L +NKI + F + NL + L N L I G F L
Sbjct: 93 TELPKSLFEGLFSLQLLLLNANKINXLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLR 152
Query: 558 NLVWLNISENLLEWFDYALIPADLQWLD--IHGNQISELG 595
+ +++++N + L+WL +H N I G
Sbjct: 153 AIQTMHLAQNPF------ICDCHLKWLADYLHTNPIETSG 186
Score = 39.7 bits (91), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 71/153 (46%), Gaps = 6/153 (3%)
Query: 321 VLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIE 380
++D LTE N + + + N + + F +L+ + L NNQI
Sbjct: 15 IVDCRGKGLTEIPTNLP-----ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS 69
Query: 381 SIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTS 440
+ + F L +L++L++ NK+ + + + L +L +L L+ N++ + +A ++ +
Sbjct: 70 ELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINXLRVDAFQDLHN 129
Query: 441 LQDFHLNGNKLTEIPK-VLRNLHSLKTLDLGDN 472
L L NKL I K L +++T+ L N
Sbjct: 130 LNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 75.5 bits (184), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 84/278 (30%), Positives = 134/278 (48%), Gaps = 18/278 (6%)
Query: 322 LDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIES 381
LDLS+ + +N+ F L L VLN+AYNK+NK+ F L LQVL+L N +
Sbjct: 271 LDLSHGFVFS--LNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGE 328
Query: 382 IHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSL 441
++ + F L + + + N + I+ + L L L L +N L I S+
Sbjct: 329 LYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHF-----IPSI 383
Query: 442 QDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLS-LNSLHQLAGLRLTENNISN 500
D L+GNKL +PK+ NL + + L +N + ++ L L + L L L +N S+
Sbjct: 384 PDIFLSGNKLVTLPKI--NL-TANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSS 440
Query: 501 ISKG-VFEKLSVLTILNLASNKIQ-----KVEAGTFDNNSNLVAIRLDGNYLTDI-GGLF 553
S + L L L N +Q ++ F+ S+L + L+ NYL + G+F
Sbjct: 441 CSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVF 500
Query: 554 PKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQI 591
L L L+++ N L + +PA+L+ LDI NQ+
Sbjct: 501 SHLTALRGLSLNSNRLTVLSHNDLPANLEILDISRNQL 538
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 68/143 (47%), Gaps = 6/143 (4%)
Query: 1068 RLFYKSSEIEMDDRDKLFDAFVSYSSKDEAFVAEELAPILE---NGDPAYKLCLHYREFP 1124
RL +K + +DA++ +SSKD +V L L+ + + LC R+F
Sbjct: 654 RLVFKDHPQGTEPDMYKYDAYLCFSSKDFTWVQNALLKHLDTQYSDQNRFNLCFEERDFV 713
Query: 1125 VGGYIGDTIVQAVESSRRTIMVLSENFIKSEWCRYEFKSAHHQVLRG-KKRLIVILLGEV 1183
G I A+ +SR+ + ++S +F++ WC F A + L LI++++G +
Sbjct: 714 PGENRIANIQDAIWNSRKIVCLVSRHFLRDGWCLEAFSYAQGRCLSDLNSALIMVVVGSL 773
Query: 1184 PQKDL--DPDIRLYLKSNTYLQW 1204
Q L IR +++ YL+W
Sbjct: 774 SQYQLMKHQSIRGFVQKQQYLRW 796
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 87/331 (26%), Positives = 140/331 (42%), Gaps = 25/331 (7%)
Query: 222 NLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGXXXXXXXXXXXXXX 281
++R LDLS+ SL + F L L+ L L N + +AD A G
Sbjct: 267 SVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLL 326
Query: 282 XXIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSG 341
+ F + + LQ N I ++ F L +L LDL +N LT
Sbjct: 327 GELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT---------- 376
Query: 342 LHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTF-ASLSNLHTLIMSN 400
+H + + + NKL ++ K ++HL N++E++ F + +L LI++
Sbjct: 377 IHFIPSIPDIFLSGNKL-VTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQ 435
Query: 401 NKLKRIESNSLDSLT-ALSVLSLDNNELEYIEENAL-----KNSTSLQDFHLNGNKLTEI 454
N+ + S +L L L N L+ E L + + LQ +LN N L +
Sbjct: 436 NRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSL 495
Query: 455 -PKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLT 513
P V +L +L+ L L N +T +++ L + L L ++ N + + VF LSVL
Sbjct: 496 PPGVFSHLTALRGLSLNSNRLTVLSHNDLPA--NLEILDISRNQLLAPNPDVFVSLSVLD 553
Query: 514 ILNLASNK-IQKVEAGTFDNNSNLVAIRLDG 543
I NK I + E TF N N + + G
Sbjct: 554 I---THNKFICECELSTFINWLNHTNVTIAG 581
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 68/270 (25%), Positives = 119/270 (44%), Gaps = 30/270 (11%)
Query: 179 IWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPA 238
+++L +F L+ L LNL NK++ +A +F D NL+VL+LS N L +
Sbjct: 278 VFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLD------NLQVLNLSYNLLGELYS 331
Query: 239 EGFSRLSRLQELYLQGNILTFLADHA---LDGXXXXXXXXXXXXXXXXIP--PELF---N 290
F L ++ + LQ N + + D L+ IP P++F N
Sbjct: 332 SNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGN 391
Query: 291 QSRDLKEVYLQNNSINVLAPGIFNV--------LTQLIVLDLSNNELTEEWVNAATFSGL 342
+ L ++ L N I++ + N+ + L +L L+ N + T S
Sbjct: 392 KLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFS-SCSGDQTPSEN 450
Query: 343 HRLVVLNIAYNKM-----NKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLI 397
L L + N + +L +F+ L LQVL+L +N + S+ F+ L+ L L
Sbjct: 451 PSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLS 510
Query: 398 MSNNKLKRIESNSLDSLTALSVLSLDNNEL 427
+++N+L + N L + L +L + N+L
Sbjct: 511 LNSNRLTVLSHNDLPA--NLEILDISRNQL 538
Score = 39.3 bits (90), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 2/93 (2%)
Query: 822 SFIGRKKLQILFLNSSH--VETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRE 879
+F G + + L+ SH V +++++ F LK+L +L L N++ +I F L+NL+
Sbjct: 259 TFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQV 318
Query: 880 LYLQYNKIIYISNRTFLSLTHLKVLQLDHNRIT 912
L L YN + + + F L + + L N I
Sbjct: 319 LNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA 351
Score = 38.5 bits (88), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 70/151 (46%), Gaps = 9/151 (5%)
Query: 287 ELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLV 346
++F L+ +YL +N +N L PG+F+ LT L L L++N LT N L
Sbjct: 474 DVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP----ANLE 529
Query: 347 VLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRI 406
+L+I+ N++ + +F L L + H N I +TF + N HT + I
Sbjct: 530 ILDISRNQLLAPNPDVFVSLSVLDITH--NKFICECELSTFINWLN-HTNVTIAGPPADI 586
Query: 407 ESNSLDSLTALSVLSLDNNELEYIEENALKN 437
DS + +S+ SL + EE LK+
Sbjct: 587 YCVYPDSFSGVSLFSLSTEGCD--EEEVLKS 615
Score = 37.7 bits (86), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 70/140 (50%), Gaps = 7/140 (5%)
Query: 799 PRIPMDATELYLDGNRIPVVGSHSFIGR-KKLQILFLNSSHVETIH-NKTFNGLKELIIL 856
P+I + A ++L NR+ + F+ R LQIL LN + + ++T + L L
Sbjct: 397 PKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQL 456
Query: 857 RLDDNRL-----TEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRI 911
L +N L TE+ FE L +L+ LYL +N + + F LT L+ L L+ NR+
Sbjct: 457 FLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRL 516
Query: 912 TSFAVWHLSSQIQSITLTSN 931
T + L + ++ + ++ N
Sbjct: 517 TVLSHNDLPANLEILDISRN 536
Score = 36.6 bits (83), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 44/87 (50%)
Query: 804 DATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRL 863
D L L N+I + +F G LQ+L L+ + + +++ F GL ++ + L N +
Sbjct: 291 DLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHI 350
Query: 864 TEIRGYEFERLENLRELYLQYNKIIYI 890
I+ F+ LE L+ L L+ N + I
Sbjct: 351 AIIQDQTFKFLEKLQTLDLRDNALTTI 377
Score = 35.8 bits (81), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 451 LTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISN--ISKGVFEK 508
LT + RNL +L+ LDLG + I ++ + L L LRL +S+ + G F
Sbjct: 62 LTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRN 121
Query: 509 LSVLTILNLASNKIQKV 525
L LT L+L+ N+I+ +
Sbjct: 122 LKALTRLDLSKNQIRSL 138
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 100/200 (50%), Gaps = 13/200 (6%)
Query: 767 MTCPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGR 826
+ CP CTC + N++DC G ++P +P TE+ L+ N I V+ +F
Sbjct: 3 LHCPAACTCSN------NIVDCRGKGL-TEIPTNLPETITEIRLEQNTIKVIPPGAFSPY 55
Query: 827 KKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNK 886
KKL+ + L+++ + + F GL+ L L L N++TE+ FE L +L+ L L NK
Sbjct: 56 KKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANK 115
Query: 887 IIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSS--QIQSITLTSNPWSCDCDFTEKFR 944
I + F L +L +L L N++ + A S IQ++ L NP+ CDC +
Sbjct: 116 INCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHL-KWLA 174
Query: 945 DYLQRSRSSVHDISQIRCMT 964
DYL ++ + S RC +
Sbjct: 175 DYLH---TNPIETSGARCTS 191
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 76/136 (55%), Gaps = 2/136 (1%)
Query: 290 NQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLN 349
N + E+ L+ N+I V+ PG F+ +L +DLSNN+++E +A F GL L L
Sbjct: 29 NLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDA--FQGLRSLNSLV 86
Query: 350 IAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESN 409
+ NK+ +L S+F+ L+ LQ+L L N+I + + F L NL+ L + +NKL+ I
Sbjct: 87 LYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKG 146
Query: 410 SLDSLTALSVLSLDNN 425
+ L A+ + L N
Sbjct: 147 TFSPLRAIQTMHLAQN 162
Score = 63.9 bits (154), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 68/118 (57%), Gaps = 2/118 (1%)
Query: 284 IPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLH 343
IPP F+ + L+ + L NN I+ LAP F L L L L N++TE + + F GL
Sbjct: 47 IPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITE--LPKSLFEGLF 104
Query: 344 RLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNN 401
L +L + NK+N L F+DL+ L +L L +N++++I + TF+ L + T+ ++ N
Sbjct: 105 SLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 57/137 (41%), Gaps = 6/137 (4%)
Query: 191 QSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQEL 250
++++ + L QN + + +FS Y LR +DLSNN L + F L L L
Sbjct: 32 ETITEIRLEQNTIKVIPPGAFSPYK------KLRRIDLSNNQISELAPDAFQGLRSLNSL 85
Query: 251 YLQGNILTFLADHALDGXXXXXXXXXXXXXXXXIPPELFNQSRDLKEVYLQNNSINVLAP 310
L GN +T L +G + + F +L + L +N + +A
Sbjct: 86 VLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAK 145
Query: 311 GIFNVLTQLIVLDLSNN 327
G F+ L + + L+ N
Sbjct: 146 GTFSPLRAIQTMHLAQN 162
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 63/129 (48%), Gaps = 4/129 (3%)
Query: 403 LKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEI-PKVLRNL 461
L I +N +++T + L+ N ++ I A L+ L+ N+++E+ P + L
Sbjct: 23 LTEIPTNLPETITEIR---LEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGL 79
Query: 462 HSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNK 521
SL +L L N ITE+ L L L L N I+ + F+ L L +L+L NK
Sbjct: 80 RSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNK 139
Query: 522 IQKVEAGTF 530
+Q + GTF
Sbjct: 140 LQTIAKGTF 148
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 83/182 (45%), Gaps = 28/182 (15%)
Query: 533 NSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYALIPA-------DLQWLD 585
++N+V R G LT+I P+ I+E LE +IP L+ +D
Sbjct: 12 SNNIVDCR--GKGLTEIPTNLPE-------TITEIRLEQNTIKVIPPGAFSPYKKLRRID 62
Query: 586 IHGNQISELG-NYFE-IESQLRLTYFDASSNKLTELTGNAIPHSVENLFLTNNL--ISKV 641
+ NQISEL + F+ + S L + NK+TEL + L N I+ +
Sbjct: 63 LSNNQISELAPDAFQGLRSLNSLVLY---GNKITELPKSLFEGLFSLQLLLLNANKINCL 119
Query: 642 QPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHKNIPDFYIGENPFQCDCNMQWLQ 701
+ F NL + L N+L+ I + SPL + I ++ +NPF CDC+++WL
Sbjct: 120 RVDAFQDLHNLNLLSLYDNKLQTIAKGTF--SPL---RAIQTMHLAQNPFICDCHLKWLA 174
Query: 702 SY 703
Y
Sbjct: 175 DY 176
Score = 40.0 bits (92), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 71/160 (44%), Gaps = 10/160 (6%)
Query: 440 SLQDFHLNGNKLTEIPK-VLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNI 498
++ + L N + IP L+ +DL +N I+E+ + L L L L N I
Sbjct: 33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92
Query: 499 SNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIG-GLFPKLP 557
+ + K +FE L L +L L +NKI + F + NL + L N L I G F L
Sbjct: 93 TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLR 152
Query: 558 NLVWLNISENLLEWFDYALIPADLQWLD--IHGNQISELG 595
+ +++++N + L+WL +H N I G
Sbjct: 153 AIQTMHLAQNPF------ICDCHLKWLADYLHTNPIETSG 186
Score = 39.7 bits (91), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 71/153 (46%), Gaps = 6/153 (3%)
Query: 321 VLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIE 380
++D LTE N + + + N + + F +L+ + L NNQI
Sbjct: 15 IVDCRGKGLTEIPTNLP-----ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS 69
Query: 381 SIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTS 440
+ + F L +L++L++ NK+ + + + L +L +L L+ N++ + +A ++ +
Sbjct: 70 ELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHN 129
Query: 441 LQDFHLNGNKLTEIPK-VLRNLHSLKTLDLGDN 472
L L NKL I K L +++T+ L N
Sbjct: 130 LNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 73.6 bits (179), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 72/262 (27%), Positives = 116/262 (44%), Gaps = 40/262 (15%)
Query: 194 SYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQ 253
+ L+L N +S + F +L L L NN + + FS L +LQ+LY+
Sbjct: 57 TLLDLQNNDISELRKDDFKGLQ------HLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110
Query: 254 GNILTFLADHALDGXXXXXXXXXXXXXXXXIPPELFNQSRDLKEVYLQNNSINVLAPGIF 313
N L IPP L L E+ + +N I + G+F
Sbjct: 111 KNHLV------------------------EIPPNL---PSSLVELRIHDNRIRKVPKGVF 143
Query: 314 NVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYR-LQVL 372
+ L + +++ N L F GL +L L I+ K+ + I KDL L L
Sbjct: 144 SGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKL----TGIPKDLPETLNEL 198
Query: 373 HLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEE 432
HL++N+I++I S L+ L + +N+++ IE+ SL L L L LDNN+L +
Sbjct: 199 HLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPA 258
Query: 433 NALKNSTSLQDFHLNGNKLTEI 454
L + LQ +L+ N +T++
Sbjct: 259 -GLPDLKLLQVVYLHTNNITKV 279
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 67/254 (26%), Positives = 110/254 (43%), Gaps = 33/254 (12%)
Query: 225 VLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGXXXXXXXXXXXXXXXXI 284
+LDL NN L + F L L L L N ++ + + A I
Sbjct: 58 LLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEI 117
Query: 285 PPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHR 344
PP L L E+ + +N I + G+F+ L + +++ N L F GL +
Sbjct: 118 PPNL---PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-K 173
Query: 345 LVVLNIAYNKMNKLDSSIFKDLYR-LQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKL 403
L L I+ K+ + I KDL L LHL++N+I++I S L+ L + +N++
Sbjct: 174 LNYLRISEAKL----TGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQI 229
Query: 404 KRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHS 463
+ IE+ SL L +L++ HL+ NKL+ +P L +L
Sbjct: 230 RMIENGSLSFLP------------------------TLRELHLDNNKLSRVPAGLPDLKL 265
Query: 464 LKTLDLGDNLITEI 477
L+ + L N IT++
Sbjct: 266 LQVVYLHTNNITKV 279
Score = 71.6 bits (174), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 74/251 (29%), Positives = 123/251 (49%), Gaps = 18/251 (7%)
Query: 284 IPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLH 343
+P E+ S D + LQNN I+ L F L L L L NN++++ ++ FS L
Sbjct: 48 VPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISK--IHEKAFSPLR 102
Query: 344 RLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKL 403
+L L I+ N + ++ ++ L L++ +N+I + + F+ L N++ + M N L
Sbjct: 103 KLQKLYISKNHLVEIPPNLPSSLVELRI---HDNRIRKVPKGVFSGLRNMNCIEMGGNPL 159
Query: 404 KR--IESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLT--EIPKVLR 459
+ E + D L L+ L + +L I ++ +L + HL+ NK+ E+ +LR
Sbjct: 160 ENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDL---PETLNELHLDHNKIQAIELEDLLR 215
Query: 460 NLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLAS 519
L L LG N I I N SL+ L L L L N +S + G+ + L +L ++ L +
Sbjct: 216 -YSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPD-LKLLQVVYLHT 273
Query: 520 NKIQKVEAGTF 530
N I KV F
Sbjct: 274 NNITKVGVNDF 284
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/218 (26%), Positives = 98/218 (44%), Gaps = 28/218 (12%)
Query: 371 VLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYI 430
+L L+NN I + ++ F L +L+ L++ NNK+ +I + L L L + N L I
Sbjct: 58 LLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEI 117
Query: 431 EENALKNSTSLQDFHLNGNKLTEIPK-VLRNLHSLKTLDLGDNLI-------TEINNLSL 482
N +SL + ++ N++ ++PK V L ++ +++G N + + L L
Sbjct: 118 PPNL---PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKL 174
Query: 483 NSLH----QLAG-----------LRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEA 527
N L +L G L L N I I + S L L L N+I+ +E
Sbjct: 175 NYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIEN 234
Query: 528 GTFDNNSNLVAIRLDGNYLTDIGGLFP--KLPNLVWLN 563
G+ L + LD N L+ + P KL +V+L+
Sbjct: 235 GSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLH 272
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 83/187 (44%), Gaps = 7/187 (3%)
Query: 491 LRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIG 550
L L N+IS + K F+ L L L L +NKI K+ F L + + N+L +I
Sbjct: 59 LDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIP 118
Query: 551 GLFPKLP-NLVWLNISENLLEWFDYALIPA--DLQWLDIHGNQISELGNYFEIESQLRLT 607
P LP +LV L I +N + + ++ +++ GN + G L+L
Sbjct: 119 ---PNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLN 175
Query: 608 YFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQ 667
Y S KLT + + +P ++ L L +N I ++ L R+ L N+++ I
Sbjct: 176 YLRISEAKLTGIPKD-LPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIEN 234
Query: 668 TALRISP 674
+L P
Sbjct: 235 GSLSFLP 241
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 61/141 (43%), Gaps = 10/141 (7%)
Query: 769 CPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKK 828
CP C C+ V+ CS G +P I D T L L N I + F G +
Sbjct: 27 CPFGCHCH------LRVVQCSDLGL-KAVPKEISPDTTLLDLQNNDISELRKDDFKGLQH 79
Query: 829 LQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKII 888
L L L ++ + IH K F+ L++L L + N L EI +L EL + N+I
Sbjct: 80 LYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEI---PPNLPSSLVELRIHDNRIR 136
Query: 889 YISNRTFLSLTHLKVLQLDHN 909
+ F L ++ +++ N
Sbjct: 137 KVPKGVFSGLRNMNCIEMGGN 157
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 63/140 (45%), Gaps = 24/140 (17%)
Query: 796 QLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVET--IHNKTFNGLKEL 853
++PP +P EL + NRI V F G + + + + + +E F+GLK L
Sbjct: 116 EIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLK-L 174
Query: 854 IILRLDDNRLT------------------EIRGYEFERLENLRELY---LQYNKIIYISN 892
LR+ + +LT +I+ E E L +LY L +N+I I N
Sbjct: 175 NYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIEN 234
Query: 893 RTFLSLTHLKVLQLDHNRIT 912
+ L L+ L LD+N+++
Sbjct: 235 GSLSFLPTLRELHLDNNKLS 254
Score = 38.1 bits (87), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 46/99 (46%), Gaps = 1/99 (1%)
Query: 797 LPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIIL 856
+P +P EL+LD N+I + + KL L L + + I N + + L L L
Sbjct: 187 IPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLREL 246
Query: 857 RLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTF 895
LD+N+L+ + L+ L+ +YL N I + F
Sbjct: 247 HLDNNKLSRVPA-GLPDLKLLQVVYLHTNNITKVGVNDF 284
Score = 32.3 bits (72), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 32/60 (53%)
Query: 855 ILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSF 914
+L L +N ++E+R +F+ L++L L L NKI I + F L L+ L + N +
Sbjct: 58 LLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEI 117
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 88/210 (41%), Gaps = 38/210 (18%)
Query: 769 CPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKK 828
CP CTC V+ CS G LP IP D TELYLDGN+
Sbjct: 4 CPTECTCLD------TVVRCSNKGL-KVLPKGIPRDVTELYLDGNQF------------- 43
Query: 829 LQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKII 888
T+ K + K L ++ L +NR++ + F + L L L YN++
Sbjct: 44 ------------TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR 91
Query: 889 YISNRTFLSLTHLKVLQLDHNRITSF--AVWHLSSQIQSITLTSNPWSCDCDFTEKFRDY 946
I RTF L L++L L N I+ ++ S + + + +NP CDC+ + D+
Sbjct: 92 CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNM-QWLSDW 150
Query: 947 LQRSRSSVHDISQIRCMTGSEVGFTIMRTV 976
+ +S + RC E+ ++ T
Sbjct: 151 V---KSEYKEPGIARCAGPGEMADKLLLTT 177
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 68/129 (52%), Gaps = 3/129 (2%)
Query: 418 SVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEI 477
+V+ N L+ + + ++ T L +L+GN+ T +PK L N L +DL +N I+ +
Sbjct: 13 TVVRCSNKGLKVLPKGIPRDVTEL---YLDGNQFTLVPKELSNYKHLTLIDLSNNRISTL 69
Query: 478 NNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLV 537
+N S +++ QL L L+ N + I F+ L L +L+L N I V G F++ S L
Sbjct: 70 SNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALS 129
Query: 538 AIRLDGNYL 546
+ + N L
Sbjct: 130 HLAIGANPL 138
Score = 57.0 bits (136), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 67/145 (46%), Gaps = 18/145 (12%)
Query: 577 IPADLQWLDIHGNQIS----ELGNYFEIESQLRLTYFDASSNKLTELTGNAIPHSVE--N 630
IP D+ L + GNQ + EL NY LT D S+N+++ L+ + + +
Sbjct: 29 IPRDVTELYLDGNQFTLVPKELSNYKH------LTLIDLSNNRISTLSNQSFSNMTQLLT 82
Query: 631 LFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHKNIPDFYIGENP 690
L L+ N + + P TF +L + L GN + + + A SH IG NP
Sbjct: 83 LILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSH-----LAIGANP 137
Query: 691 FQCDCNMQWLQSYSVNKERNKPNLV 715
CDCNMQWL + V E +P +
Sbjct: 138 LYCDCNMQWLSDW-VKSEYKEPGIA 161
Score = 53.1 bits (126), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 49/83 (59%)
Query: 369 LQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELE 428
L ++ L NN+I ++ +F++++ L TLI+S N+L+ I + D L +L +LSL N++
Sbjct: 56 LTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS 115
Query: 429 YIEENALKNSTSLQDFHLNGNKL 451
+ E A + ++L + N L
Sbjct: 116 VVPEGAFNDLSALSHLAIGANPL 138
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 69/167 (41%), Gaps = 34/167 (20%)
Query: 217 ARCGINLRVLD----LSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGXXXXX 272
+RC LD SN LP +G R + ELYL GN T
Sbjct: 2 SRCPTECTCLDTVVRCSNKGLKVLP-KGIPR--DVTELYLDGNQFTL------------- 45
Query: 273 XXXXXXXXXXXIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEE 332
+P EL N + L + L NN I+ L+ F+ +TQL+ L LS N L
Sbjct: 46 -----------VPKELSNY-KHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL--R 91
Query: 333 WVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQI 379
+ TF GL L +L++ N ++ + F DL L L + N +
Sbjct: 92 CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 62/130 (47%), Gaps = 6/130 (4%)
Query: 298 VYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNK 357
V N + VL GI +T+L L N+ T + S L +++++ N+++
Sbjct: 15 VRCSNKGLKVLPKGIPRDVTELY---LDGNQFT---LVPKELSNYKHLTLIDLSNNRIST 68
Query: 358 LDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTAL 417
L + F ++ +L L L N++ I TF L +L L + N + + + + L+AL
Sbjct: 69 LSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSAL 128
Query: 418 SVLSLDNNEL 427
S L++ N L
Sbjct: 129 SHLAIGANPL 138
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 70.9 bits (172), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 64/223 (28%), Positives = 106/223 (47%), Gaps = 5/223 (2%)
Query: 348 LNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIE 407
LN+ N + + + FK L L++L L N + I F L +L+TL + +N+L +
Sbjct: 40 LNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVP 99
Query: 408 SNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEI--PKVLRNLHSLK 465
+ + + L+ L L L NN +E I A SL+ L K E L +L+
Sbjct: 100 TQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLR 159
Query: 466 TLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKV 525
L+LG + +I NL+ +L +L L L+ N + I G F+ L+ L L L ++ +
Sbjct: 160 YLNLGMCNLKDIPNLT--ALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATI 217
Query: 526 EAGTFDNNSNLVAIRLDGNYLTDIG-GLFPKLPNLVWLNISEN 567
E FD+ +L + L N L + LF L L ++++ N
Sbjct: 218 ERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHN 260
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 72/139 (51%), Gaps = 5/139 (3%)
Query: 768 TCPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRK 827
+CP C+C S +A+ + C+ ++P IP++ L L N I V+ + +F +
Sbjct: 5 SCPAACSC----SNQASRVICTRRELA-EVPASIPVNTRYLNLQENSIQVIRTDTFKHLR 59
Query: 828 KLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKI 887
L+IL L+ + V I FNGL L L L DNRLT + FE L LREL+L+ N I
Sbjct: 60 HLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPI 119
Query: 888 IYISNRTFLSLTHLKVLQL 906
I + F + L+ L L
Sbjct: 120 ESIPSYAFNRVPSLRRLDL 138
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 97/228 (42%), Gaps = 25/228 (10%)
Query: 221 INLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGXXXXXXXXXXXXX 280
+N R L+L NS + + F L L+ L L N++ + A +G
Sbjct: 35 VNTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNR 94
Query: 281 XXXIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTE-EWVNAATF 339
+P + F L+E++L+NN I + FN + L LDL EL E+++ A F
Sbjct: 95 LTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLG--ELKRLEYISEAAF 152
Query: 340 SGLHRLVVLNIAY----------------------NKMNKLDSSIFKDLYRLQVLHLENN 377
GL L LN+ N+++ + F+ L L+ L L +
Sbjct: 153 EGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHA 212
Query: 378 QIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNN 425
Q+ +I RN F L +L L +S+N L + + L L + L++N
Sbjct: 213 QVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHN 260
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 71/149 (47%), Gaps = 14/149 (9%)
Query: 795 NQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELI 854
N++P +D EL R+ + +F G L+ L L +++ I N T L L
Sbjct: 128 NRVPSLRRLDLGEL----KRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLT--ALVRLE 181
Query: 855 ILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITS- 913
L L NRL IR F+ L +LR+L+L + ++ I F L L+ L L HN + S
Sbjct: 182 ELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSL 241
Query: 914 ----FAVWHLSSQIQSITLTSNPWSCDCD 938
F H +++ + L NPW C+CD
Sbjct: 242 PHDLFTPLH---RLERVHLNHNPWHCNCD 267
Score = 54.3 bits (129), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 57/245 (23%), Positives = 112/245 (45%), Gaps = 14/245 (5%)
Query: 465 KTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQK 524
+ L+L +N I I + L L L+L++N + I G F L L L L N++
Sbjct: 38 RYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTT 97
Query: 525 VEAGTFDNNSNLVAIRLDGNYLTDIGGL-FPKLPNLVWLNISE-NLLEWFDYALIPA--D 580
V F+ S L + L N + I F ++P+L L++ E LE+ A +
Sbjct: 98 VPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVN 157
Query: 581 LQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPH--SVENLFLTNNLI 638
L++L++ + ++ N + + +RL + S N+L + + S+ L+L + +
Sbjct: 158 LRYLNLGMCNLKDIPN---LTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQV 214
Query: 639 SKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHKNIPDFYIGENPFQCDCNMQ 698
+ ++ F +L ++L N L ++ P H+ + ++ NP+ C+C++
Sbjct: 215 ATIERNAFDDLKSLEELNLSHNNLMSLPHDLF----TPLHR-LERVHLNHNPWHCNCDVL 269
Query: 699 WLQSY 703
WL +
Sbjct: 270 WLSWW 274
Score = 30.8 bits (68), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 21/41 (51%)
Query: 876 NLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAV 916
N R L LQ N I I TF L HL++LQL N + V
Sbjct: 36 NTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEV 76
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 69.7 bits (169), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 94/215 (43%), Gaps = 42/215 (19%)
Query: 769 CPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKK 828
CP+ C+C I C++ G + +P IP AT L L+ N++
Sbjct: 1 CPSRCSC------SGTEIRCNSKGLTS-VPTGIPSSATRLELESNKL------------- 40
Query: 829 LQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKII 888
+++ + F+ L +L L L N++ + F++L L LYL NK+
Sbjct: 41 -----------QSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQ 89
Query: 889 YISNRTFLSLTHLKVLQLDHNRITSF--AVWHLSSQIQSITLTSNPWSCDCDFTEKFRDY 946
+ N F LT LK L LD N++ S ++ + +Q I L +NPW C C DY
Sbjct: 90 SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI----DY 145
Query: 947 LQR--SRSSVHDISQIRCMTGSEVGFTIMRTVIPS 979
L R +++S + +C S G + + P+
Sbjct: 146 LSRWLNKNSQKEQGSAKC---SGSGKPVRSIICPT 177
Score = 63.5 bits (153), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 69/129 (53%), Gaps = 5/129 (3%)
Query: 438 STSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENN 497
S S + N LT +P + + S L+L N + + + + L QL L L++N
Sbjct: 6 SCSGTEIRCNSKGLTSVPTGIPS--SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQ 63
Query: 498 ISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDI-GGLFPKL 556
I ++ GVF+KL+ LTIL L NK+Q + G FD + L + LD N L + G+F +L
Sbjct: 64 IQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRL 123
Query: 557 PNL--VWLN 563
+L +WL+
Sbjct: 124 TSLQKIWLH 132
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 52/102 (50%)
Query: 348 LNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIE 407
L + NK+ L +F L +L L L NQI+S+ F L+ L L + NKL+ +
Sbjct: 33 LELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLP 92
Query: 408 SNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGN 449
+ D LT L L+LD N+L+ + + TSLQ L+ N
Sbjct: 93 NGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134
Score = 57.0 bits (136), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 57/102 (55%), Gaps = 2/102 (1%)
Query: 300 LQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLD 359
L++N + L G+F+ LTQL L LS N++ + + F L +L +L + NK+ L
Sbjct: 35 LESNKLQSLPHGVFDKLTQLTKLSLSQNQI--QSLPDGVFDKLTKLTILYLHENKLQSLP 92
Query: 360 SSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNN 401
+ +F L +L+ L L+ NQ++S+ F L++L + + N
Sbjct: 93 NGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134
Score = 50.1 bits (118), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 54/102 (52%), Gaps = 1/102 (0%)
Query: 372 LHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIE 431
L LE+N+++S+ F L+ L L +S N+++ + D LT L++L L N+L+ +
Sbjct: 33 LELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLP 92
Query: 432 ENALKNSTSLQDFHLNGNKLTEIPK-VLRNLHSLKTLDLGDN 472
T L++ L+ N+L +P + L SL+ + L N
Sbjct: 93 NGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 53/107 (49%), Gaps = 1/107 (0%)
Query: 439 TSLQDFHLNGNKLTEIP-KVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENN 497
+S L NKL +P V L L L L N I + + + L +L L L EN
Sbjct: 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87
Query: 498 ISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGN 544
+ ++ GVF+KL+ L L L +N+++ V G FD ++L I L N
Sbjct: 88 LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 46/102 (45%)
Query: 226 LDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGXXXXXXXXXXXXXXXXIP 285
L+L +N SLP F +L++L +L L N + L D D +P
Sbjct: 33 LELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLP 92
Query: 286 PELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNN 327
+F++ LKE+ L N + + GIF+ LT L + L N
Sbjct: 93 NGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 57/130 (43%), Gaps = 23/130 (17%)
Query: 391 SNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNK 450
S+ L + +NKL+ + D LT L+ LSL N+++ + + T L +L+ NK
Sbjct: 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87
Query: 451 LTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLS 510
L +P N + L QL L L N + ++ G+F++L+
Sbjct: 88 LQSLP-----------------------NGVFDKLTQLKELALDTNQLKSVPDGIFDRLT 124
Query: 511 VLTILNLASN 520
L + L +N
Sbjct: 125 SLQKIWLHTN 134
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 6/90 (6%)
Query: 177 NSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSL 236
N + +LP +F L L+ L+L+QN++ ++ F L +L L N SL
Sbjct: 38 NKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKL------TKLTILYLHENKLQSL 91
Query: 237 PAEGFSRLSRLQELYLQGNILTFLADHALD 266
P F +L++L+EL L N L + D D
Sbjct: 92 PNGVFDKLTQLKELALDTNQLKSVPDGIFD 121
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 6/80 (7%)
Query: 176 MNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDS 235
N I +LPD +F L L+ L L +NKL ++ F L+ L L N S
Sbjct: 61 QNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKL------TQLKELALDTNQLKS 114
Query: 236 LPAEGFSRLSRLQELYLQGN 255
+P F RL+ LQ+++L N
Sbjct: 115 VPDGIFDRLTSLQKIWLHTN 134
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 48/121 (39%), Gaps = 6/121 (4%)
Query: 192 SLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELY 251
S + L L NKL ++ F L L LS N SLP F +L++L LY
Sbjct: 29 SATRLELESNKLQSLPHGVFDKL------TQLTKLSLSQNQIQSLPDGVFDKLTKLTILY 82
Query: 252 LQGNILTFLADHALDGXXXXXXXXXXXXXXXXIPPELFNQSRDLKEVYLQNNSINVLAPG 311
L N L L + D +P +F++ L++++L N + P
Sbjct: 83 LHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 142
Query: 312 I 312
I
Sbjct: 143 I 143
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 69.7 bits (169), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 67/245 (27%), Positives = 113/245 (46%), Gaps = 14/245 (5%)
Query: 348 LNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIE 407
LN+ N + + + FK L L++L L N + I F L +L+TL + +N+L +
Sbjct: 40 LNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVP 99
Query: 408 SNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEI--PKVLRNLHSLK 465
+ + + L+ L L L NN +E I A SL+ L K E L +L+
Sbjct: 100 TQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLR 159
Query: 466 TLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKV 525
L+LG + +I NL+ +L +L L L+ N + I G F+ L+ L L L ++ +
Sbjct: 160 YLNLGMCNLKDIPNLT--ALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATI 217
Query: 526 EAGTFDNNSNLVAIRLDGNYLTDIG-GLFPKLPNLVWLNISEN---------LLEWFDYA 575
E FD+ +L + L N L + LF L L ++++ N L W+
Sbjct: 218 ERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHNPWHCNCDVLWLSWWLKE 277
Query: 576 LIPAD 580
+P++
Sbjct: 278 TVPSN 282
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 72/139 (51%), Gaps = 5/139 (3%)
Query: 768 TCPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRK 827
+CP C+C S +A+ + C+ ++P IP++ L L N I V+ + +F +
Sbjct: 5 SCPAACSC----SNQASRVICTRRELA-EVPASIPVNTRYLNLQENSIQVIRTDTFKHLR 59
Query: 828 KLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKI 887
L+IL L+ + V I FNGL L L L DNRLT + FE L LREL+L+ N I
Sbjct: 60 HLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPI 119
Query: 888 IYISNRTFLSLTHLKVLQL 906
I + F + L+ L L
Sbjct: 120 ESIPSYAFNRVPSLRRLDL 138
Score = 65.1 bits (157), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 97/228 (42%), Gaps = 25/228 (10%)
Query: 221 INLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGXXXXXXXXXXXXX 280
+N R L+L NS + + F L L+ L L N++ + A +G
Sbjct: 35 VNTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNR 94
Query: 281 XXXIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTE-EWVNAATF 339
+P + F L+E++L+NN I + FN + L LDL EL E+++ A F
Sbjct: 95 LTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLG--ELKRLEYISEAAF 152
Query: 340 SGLHRLVVLNIAY----------------------NKMNKLDSSIFKDLYRLQVLHLENN 377
GL L LN+ N+++ + F+ L L+ L L +
Sbjct: 153 EGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHA 212
Query: 378 QIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNN 425
Q+ +I RN F L +L L +S+N L + + L L + L++N
Sbjct: 213 QVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHN 260
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 71/149 (47%), Gaps = 14/149 (9%)
Query: 795 NQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELI 854
N++P +D EL R+ + +F G L+ L L +++ I N T L L
Sbjct: 128 NRVPSLRRLDLGEL----KRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLT--ALVRLE 181
Query: 855 ILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITS- 913
L L NRL IR F+ L +LR+L+L + ++ I F L L+ L L HN + S
Sbjct: 182 ELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSL 241
Query: 914 ----FAVWHLSSQIQSITLTSNPWSCDCD 938
F H +++ + L NPW C+CD
Sbjct: 242 PHDLFTPLH---RLERVHLNHNPWHCNCD 267
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/257 (23%), Positives = 118/257 (45%), Gaps = 16/257 (6%)
Query: 450 KLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKL 509
+L E+P + + + L+L +N I I + L L L+L++N + I G F L
Sbjct: 25 ELAEVPASIPV--NTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGL 82
Query: 510 SVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGG-LFPKLPNLVWLNISE-N 567
L L L N++ V F+ S L + L N + I F ++P+L L++ E
Sbjct: 83 PSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELK 142
Query: 568 LLEWFDYALIPA--DLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIP 625
LE+ A +L++L++ + ++ N + + +RL + S N+L + +
Sbjct: 143 RLEYISEAAFEGLVNLRYLNLGMCNLKDIPN---LTALVRLEELELSGNRLDLIRPGSFQ 199
Query: 626 H--SVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHKNIPD 683
S+ L+L + ++ ++ F +L ++L N L ++ P H+ +
Sbjct: 200 GLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFT----PLHR-LER 254
Query: 684 FYIGENPFQCDCNMQWL 700
++ NP+ C+C++ WL
Sbjct: 255 VHLNHNPWHCNCDVLWL 271
Score = 31.2 bits (69), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 21/41 (51%)
Query: 876 NLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAV 916
N R L LQ N I I TF L HL++LQL N + V
Sbjct: 36 NTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEV 76
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 104/203 (51%), Gaps = 7/203 (3%)
Query: 348 LNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIE 407
L++++N + L S F LQVL L +I++I + SLS+L TLI++ N ++ +
Sbjct: 34 LDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 93
Query: 408 SNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLT--EIPKVLRNLHSLK 465
+ L++L L L +E + + +L++ ++ N + ++P+ NL +L+
Sbjct: 94 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 153
Query: 466 TLDLGDNLITEINNLSLNSLHQLAGLRLTENN----ISNISKGVFEKLSVLTILNLASNK 521
LDL N I I L LHQ+ L L+ + ++ I G F+++ L L L +N+
Sbjct: 154 HLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LKELALDTNQ 212
Query: 522 IQKVEAGTFDNNSNLVAIRLDGN 544
++ V G FD ++L I L N
Sbjct: 213 LKSVPDGIFDRLTSLQKIWLHTN 235
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 98/211 (46%), Gaps = 14/211 (6%)
Query: 196 LNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGN 255
L+L+ N L ++ ++SF ++ L+VLDLS ++ + LS L L L GN
Sbjct: 34 LDLSWNPLRHLGSYSFFSFP------ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 87
Query: 256 ILTFLADHALDGXXXXXXXXXXXXXXXXIPPELFNQSRDLKEVYLQNNSINVLA-PGIFN 314
+ LA A G + + LKE+ + +N I P F+
Sbjct: 88 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 147
Query: 315 VLTQLIVLDLSNNELTEEWVNAATFSGLHRL----VVLNIAYNKMNKLDSSIFKDLYRLQ 370
LT L LDLS+N++ + LH++ + L+++ N MN + FK++ RL+
Sbjct: 148 NLTNLEHLDLSSNKIQS--IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLK 204
Query: 371 VLHLENNQIESIHRNTFASLSNLHTLIMSNN 401
L L+ NQ++S+ F L++L + + N
Sbjct: 205 ELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 235
Score = 50.1 bits (118), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 56/121 (46%)
Query: 796 QLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELII 855
++P +P L L N + +GS+SF +LQ+L L+ ++TI + + L L
Sbjct: 22 KIPDNLPFSTKNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLST 81
Query: 856 LRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFA 915
L L N + + F L +L++L + + N L LK L + HN I SF
Sbjct: 82 LILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK 141
Query: 916 V 916
+
Sbjct: 142 L 142
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 83/206 (40%), Gaps = 39/206 (18%)
Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
+ L L GN I + +F G LQ L +++ ++ N LK L L + N +
Sbjct: 80 STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS 139
Query: 866 IRGYE-FERLENLRELYLQYNKI--IYISNRTFLSLT----------------------- 899
+ E F L NL L L NKI IY ++ L
Sbjct: 140 FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK 199
Query: 900 --HLKVLQLDHNRITSF--AVWHLSSQIQSITLTSNPWSCDCDFTEKFRDYLQR--SRSS 953
LK L LD N++ S ++ + +Q I L +NPW C C DYL R +++S
Sbjct: 200 EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI----DYLSRWLNKNS 255
Query: 954 VHDISQIRCMTGSEVGFTIMRTVIPS 979
+ +C +GS G + + P+
Sbjct: 256 QKEQGSAKC-SGS--GKPVRSIICPT 278
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 104/203 (51%), Gaps = 7/203 (3%)
Query: 348 LNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIE 407
L++++N + L S F LQVL L +I++I + SLS+L TLI++ N ++ +
Sbjct: 35 LDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 94
Query: 408 SNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLT--EIPKVLRNLHSLK 465
+ L++L L L +E + + +L++ ++ N + ++P+ NL +L+
Sbjct: 95 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 154
Query: 466 TLDLGDNLITEINNLSLNSLHQLAGLRLTENN----ISNISKGVFEKLSVLTILNLASNK 521
LDL N I I L LHQ+ L L+ + ++ I G F+++ L L L +N+
Sbjct: 155 HLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LKELALDTNQ 213
Query: 522 IQKVEAGTFDNNSNLVAIRLDGN 544
++ V G FD ++L I L N
Sbjct: 214 LKSVPDGIFDRLTSLQKIWLHTN 236
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 98/211 (46%), Gaps = 14/211 (6%)
Query: 196 LNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGN 255
L+L+ N L ++ ++SF ++ L+VLDLS ++ + LS L L L GN
Sbjct: 35 LDLSWNPLRHLGSYSFFSFP------ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 88
Query: 256 ILTFLADHALDGXXXXXXXXXXXXXXXXIPPELFNQSRDLKEVYLQNNSINVLA-PGIFN 314
+ LA A G + + LKE+ + +N I P F+
Sbjct: 89 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 148
Query: 315 VLTQLIVLDLSNNELTEEWVNAATFSGLHRL----VVLNIAYNKMNKLDSSIFKDLYRLQ 370
LT L LDLS+N++ + LH++ + L+++ N MN + FK++ RL+
Sbjct: 149 NLTNLEHLDLSSNKIQS--IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLK 205
Query: 371 VLHLENNQIESIHRNTFASLSNLHTLIMSNN 401
L L+ NQ++S+ F L++L + + N
Sbjct: 206 ELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 236
Score = 50.1 bits (118), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 56/121 (46%)
Query: 796 QLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELII 855
++P +P L L N + +GS+SF +LQ+L L+ ++TI + + L L
Sbjct: 23 KIPDNLPFSTKNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLST 82
Query: 856 LRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFA 915
L L N + + F L +L++L + + N L LK L + HN I SF
Sbjct: 83 LILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK 142
Query: 916 V 916
+
Sbjct: 143 L 143
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 83/206 (40%), Gaps = 39/206 (18%)
Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
+ L L GN I + +F G LQ L +++ ++ N LK L L + N +
Sbjct: 81 STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS 140
Query: 866 IRGYE-FERLENLRELYLQYNKI--IYISNRTFLSLT----------------------- 899
+ E F L NL L L NKI IY ++ L
Sbjct: 141 FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK 200
Query: 900 --HLKVLQLDHNRITSF--AVWHLSSQIQSITLTSNPWSCDCDFTEKFRDYLQR--SRSS 953
LK L LD N++ S ++ + +Q I L +NPW C C DYL R +++S
Sbjct: 201 EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI----DYLSRWLNKNS 256
Query: 954 VHDISQIRCMTGSEVGFTIMRTVIPS 979
+ +C +GS G + + P+
Sbjct: 257 QKEQGSAKC-SGS--GKPVRSIICPT 279
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 104/203 (51%), Gaps = 7/203 (3%)
Query: 348 LNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIE 407
L++++N + L S F LQVL L +I++I + SLS+L TLI++ N ++ +
Sbjct: 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92
Query: 408 SNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLT--EIPKVLRNLHSLK 465
+ L++L L L +E + + +L++ ++ N + ++P+ NL +L+
Sbjct: 93 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 152
Query: 466 TLDLGDNLITEINNLSLNSLHQLAGLRLTENN----ISNISKGVFEKLSVLTILNLASNK 521
LDL N I I L LHQ+ L L+ + ++ I G F+++ L L L +N+
Sbjct: 153 HLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LKELALDTNQ 211
Query: 522 IQKVEAGTFDNNSNLVAIRLDGN 544
++ V G FD ++L I L N
Sbjct: 212 LKSVPDGIFDRLTSLQKIWLHTN 234
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 99/211 (46%), Gaps = 14/211 (6%)
Query: 196 LNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGN 255
L+L+ N L ++ ++SF ++ L+VLDLS ++ + LS L L L GN
Sbjct: 33 LDLSFNPLRHLGSYSFFSFP------ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86
Query: 256 ILTFLADHALDGXXXXXXXXXXXXXXXXIPPELFNQSRDLKEVYLQNNSINVLA-PGIFN 314
+ LA A G + + LKE+ + +N I P F+
Sbjct: 87 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146
Query: 315 VLTQLIVLDLSNNELTEEWVNAATFSGLHRL----VVLNIAYNKMNKLDSSIFKDLYRLQ 370
LT L LDLS+N++ + + LH++ + L+++ N MN + FK++ RL+
Sbjct: 147 NLTNLEHLDLSSNKI--QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLK 203
Query: 371 VLHLENNQIESIHRNTFASLSNLHTLIMSNN 401
L L+ NQ++S+ F L++L + + N
Sbjct: 204 ELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 56/121 (46%)
Query: 796 QLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELII 855
++P +P L L N + +GS+SF +LQ+L L+ ++TI + + L L
Sbjct: 21 KIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLST 80
Query: 856 LRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFA 915
L L N + + F L +L++L + + N L LK L + HN I SF
Sbjct: 81 LILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK 140
Query: 916 V 916
+
Sbjct: 141 L 141
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 68/174 (39%), Gaps = 34/174 (19%)
Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
+ L L GN I + +F G LQ L +++ ++ N LK L L + N +
Sbjct: 79 STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS 138
Query: 866 IRGYE-FERLENLRELYLQYNKI--IYISNRTFLSLT----------------------- 899
+ E F L NL L L NKI IY ++ L
Sbjct: 139 FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK 198
Query: 900 --HLKVLQLDHNRITSF--AVWHLSSQIQSITLTSNPWSCDCDFTEKFRDYLQR 949
LK L LD N++ S ++ + +Q I L +NPW C C DYL R
Sbjct: 199 EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI----DYLSR 248
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 104/203 (51%), Gaps = 7/203 (3%)
Query: 348 LNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIE 407
L++++N + L S F LQVL L +I++I + SLS+L TLI++ N ++ +
Sbjct: 34 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 93
Query: 408 SNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLT--EIPKVLRNLHSLK 465
+ L++L L L +E + + +L++ ++ N + ++P+ NL +L+
Sbjct: 94 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 153
Query: 466 TLDLGDNLITEINNLSLNSLHQLAGLRLTENN----ISNISKGVFEKLSVLTILNLASNK 521
LDL N I I L LHQ+ L L+ + ++ I G F+++ L L L +N+
Sbjct: 154 HLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LKELALDTNQ 212
Query: 522 IQKVEAGTFDNNSNLVAIRLDGN 544
++ V G FD ++L I L N
Sbjct: 213 LKSVPDGIFDRLTSLQKIWLHTN 235
Score = 53.5 bits (127), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 99/211 (46%), Gaps = 14/211 (6%)
Query: 196 LNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGN 255
L+L+ N L ++ ++SF ++ L+VLDLS ++ + LS L L L GN
Sbjct: 34 LDLSFNPLRHLGSYSFFSFP------ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 87
Query: 256 ILTFLADHALDGXXXXXXXXXXXXXXXXIPPELFNQSRDLKEVYLQNNSINVLA-PGIFN 314
+ LA A G + + LKE+ + +N I P F+
Sbjct: 88 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 147
Query: 315 VLTQLIVLDLSNNELTEEWVNAATFSGLHRL----VVLNIAYNKMNKLDSSIFKDLYRLQ 370
LT L LDLS+N++ + + LH++ + L+++ N MN + FK++ RL+
Sbjct: 148 NLTNLEHLDLSSNKI--QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLK 204
Query: 371 VLHLENNQIESIHRNTFASLSNLHTLIMSNN 401
L L+ NQ++S+ F L++L + + N
Sbjct: 205 ELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 235
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 56/121 (46%)
Query: 796 QLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELII 855
++P +P L L N + +GS+SF +LQ+L L+ ++TI + + L L
Sbjct: 22 KIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLST 81
Query: 856 LRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFA 915
L L N + + F L +L++L + + N L LK L + HN I SF
Sbjct: 82 LILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK 141
Query: 916 V 916
+
Sbjct: 142 L 142
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 83/206 (40%), Gaps = 39/206 (18%)
Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
+ L L GN I + +F G LQ L +++ ++ N LK L L + N +
Sbjct: 80 STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS 139
Query: 866 IRGYE-FERLENLRELYLQYNKI--IYISNRTFLSLT----------------------- 899
+ E F L NL L L NKI IY ++ L
Sbjct: 140 FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK 199
Query: 900 --HLKVLQLDHNRITSF--AVWHLSSQIQSITLTSNPWSCDCDFTEKFRDYLQR--SRSS 953
LK L LD N++ S ++ + +Q I L +NPW C C DYL R +++S
Sbjct: 200 EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI----DYLSRWLNKNS 255
Query: 954 VHDISQIRCMTGSEVGFTIMRTVIPS 979
+ +C +GS G + + P+
Sbjct: 256 QKEQGSAKC-SGS--GKPVRSIICPT 278
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 104/203 (51%), Gaps = 7/203 (3%)
Query: 348 LNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIE 407
L++++N + L S F LQVL L +I++I + SLS+L TLI++ N ++ +
Sbjct: 35 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 94
Query: 408 SNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLT--EIPKVLRNLHSLK 465
+ L++L L L +E + + +L++ ++ N + ++P+ NL +L+
Sbjct: 95 LGAFSGLSSLQKLVALETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 154
Query: 466 TLDLGDNLITEINNLSLNSLHQLAGLRLTENN----ISNISKGVFEKLSVLTILNLASNK 521
LDL N I I L LHQ+ L L+ + ++ I G F+++ L L L +N+
Sbjct: 155 HLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LKELALDTNQ 213
Query: 522 IQKVEAGTFDNNSNLVAIRLDGN 544
++ V G FD ++L I L N
Sbjct: 214 LKSVPDGIFDRLTSLQKIWLHTN 236
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 99/211 (46%), Gaps = 14/211 (6%)
Query: 196 LNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGN 255
L+L+ N L ++ ++SF ++ L+VLDLS ++ + LS L L L GN
Sbjct: 35 LDLSFNPLRHLGSYSFFSFP------ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 88
Query: 256 ILTFLADHALDGXXXXXXXXXXXXXXXXIPPELFNQSRDLKEVYLQNNSINVLA-PGIFN 314
+ LA A G + + LKE+ + +N I P F+
Sbjct: 89 PIQSLALGAFSGLSSLQKLVALETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 148
Query: 315 VLTQLIVLDLSNNELTEEWVNAATFSGLHRL----VVLNIAYNKMNKLDSSIFKDLYRLQ 370
LT L LDLS+N++ + + LH++ + L+++ N MN + FK++ RL+
Sbjct: 149 NLTNLEHLDLSSNKI--QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLK 205
Query: 371 VLHLENNQIESIHRNTFASLSNLHTLIMSNN 401
L L+ NQ++S+ F L++L + + N
Sbjct: 206 ELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 236
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 56/121 (46%)
Query: 796 QLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELII 855
++P +P L L N + +GS+SF +LQ+L L+ ++TI + + L L
Sbjct: 23 KIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLST 82
Query: 856 LRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFA 915
L L N + + F L +L++L + + N L LK L + HN I SF
Sbjct: 83 LILTGNPIQSLALGAFSGLSSLQKLVALETNLASLENFPIGHLKTLKELNVAHNLIQSFK 142
Query: 916 V 916
+
Sbjct: 143 L 143
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 83/206 (40%), Gaps = 39/206 (18%)
Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
+ L L GN I + +F G LQ L +++ ++ N LK L L + N +
Sbjct: 81 STLILTGNPIQSLALGAFSGLSSLQKLVALETNLASLENFPIGHLKTLKELNVAHNLIQS 140
Query: 866 IRGYE-FERLENLRELYLQYNKI--IYISNRTFLSLT----------------------- 899
+ E F L NL L L NKI IY ++ L
Sbjct: 141 FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK 200
Query: 900 --HLKVLQLDHNRITSF--AVWHLSSQIQSITLTSNPWSCDCDFTEKFRDYLQR--SRSS 953
LK L LD N++ S ++ + +Q I L +NPW C C DYL R +++S
Sbjct: 201 EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI----DYLSRWLNKNS 256
Query: 954 VHDISQIRCMTGSEVGFTIMRTVIPS 979
+ +C +GS G + + P+
Sbjct: 257 QKEQGSAKC-SGS--GKPVRSIICPT 279
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 68.2 bits (165), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 64/223 (28%), Positives = 103/223 (46%), Gaps = 6/223 (2%)
Query: 300 LQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLD 359
L N+I ++ F L L VL L N + + + F+GL L L + N + +
Sbjct: 82 LMENNIQMIQADTFRHLHHLEVLQLGRNSIRQ--IEVGAFNGLASLNTLELFDNWLTVIP 139
Query: 360 SSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSN-NKLKRIESNSLDSLTALS 418
S F+ L +L+ L L NN IESI F + +L L + KL+ I + + L L
Sbjct: 140 SGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLK 199
Query: 419 VLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEI-PKVLRNLHSLKTLDLGDNLITEI 477
L+L ++ + L L++ ++GN EI P L SLK L + ++ ++ I
Sbjct: 200 YLNLGMCNIKDMPN--LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLI 257
Query: 478 NNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASN 520
+ + L L L L NN+S++ +F L L L+L N
Sbjct: 258 ERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300
Score = 63.9 bits (154), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 63/259 (24%), Positives = 124/259 (47%), Gaps = 16/259 (6%)
Query: 451 LTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLS 510
L+E+P+ + + + + L+L +N I I + LH L L+L N+I I G F L+
Sbjct: 66 LSEVPQGIPS--NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLA 123
Query: 511 VLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGL-FPKLPNLVWLNISE-NL 568
L L L N + + +G F+ S L + L N + I F ++P+L+ L++ E
Sbjct: 124 SLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKK 183
Query: 569 LEWFDYALIPA--DLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIP- 625
LE+ +L++L++ I ++ N + + L + S N E+ +
Sbjct: 184 LEYISEGAFEGLFNLKYLNLGMCNIKDMPN---LTPLVGLEELEMSGNHFPEIRPGSFHG 240
Query: 626 -HSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHKNIPDF 684
S++ L++ N+ +S ++ F +L ++L N L ++ +PL + + +
Sbjct: 241 LSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLF--TPL---RYLVEL 295
Query: 685 YIGENPFQCDCNMQWLQSY 703
++ NP+ CDC++ WL +
Sbjct: 296 HLHHNPWNCDCDILWLAWW 314
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 67/138 (48%), Gaps = 5/138 (3%)
Query: 769 CPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKK 828
CP+ C+C + S + C+ G +++P IP + L L N I ++ + +F
Sbjct: 46 CPSVCSCSNQFS----KVVCTRRGL-SEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHH 100
Query: 829 LQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKII 888
L++L L + + I FNGL L L L DN LT I FE L LREL+L+ N I
Sbjct: 101 LEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE 160
Query: 889 YISNRTFLSLTHLKVLQL 906
I + F + L L L
Sbjct: 161 SIPSYAFNRVPSLMRLDL 178
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 93/202 (46%), Gaps = 11/202 (5%)
Query: 177 NSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSL 236
NSI + F L SL+ L L N L+ + + +F LR L L NN +S+
Sbjct: 109 NSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLS------KLRELWLRNNPIESI 162
Query: 237 PAEGFSRLSRLQELYL-QGNILTFLADHALDGXXXXXXXXXXXXXXXXIPPELFNQSRDL 295
P+ F+R+ L L L + L ++++ A +G +P L
Sbjct: 163 PSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN--LTPLVGL 220
Query: 296 KEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKM 355
+E+ + N + PG F+ L+ L L + N++++ NA F GL LV LN+A+N +
Sbjct: 221 EELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNA--FDGLASLVELNLAHNNL 278
Query: 356 NKLDSSIFKDLYRLQVLHLENN 377
+ L +F L L LHL +N
Sbjct: 279 SSLPHDLFTPLRYLVELHLHHN 300
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 71/148 (47%), Gaps = 10/148 (6%)
Query: 795 NQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKT-FNGLKEL 853
N++P + +D EL ++ + +F G L+ L L +++ + N T GL+EL
Sbjct: 168 NRVPSLMRLDLGEL----KKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEEL 223
Query: 854 IILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITS 913
+ N EIR F L +L++L++ +++ I F L L L L HN ++S
Sbjct: 224 ---EMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSS 280
Query: 914 FA--VWHLSSQIQSITLTSNPWSCDCDF 939
++ + + L NPW+CDCD
Sbjct: 281 LPHDLFTPLRYLVELHLHHNPWNCDCDI 308
Score = 30.0 bits (66), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 20/41 (48%)
Query: 876 NLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAV 916
N R L L N I I TF L HL+VLQL N I V
Sbjct: 76 NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEV 116
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 67.8 bits (164), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 98/177 (55%), Gaps = 8/177 (4%)
Query: 390 LSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGN 449
L+++ +I +N+ +K ++ + L + L+L N+L I +ALK T+L L GN
Sbjct: 40 LNSIDQIIANNSDIKSVQG--IQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGN 95
Query: 450 KLTEIPK-VLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEK 508
+L +P V L +LK L L +N + + + + L L L L N + ++ KGVF+K
Sbjct: 96 QLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDK 155
Query: 509 LSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDI-GGLFPKLPNL--VWL 562
L+ LT L+L +N++Q + G FD + L + L+ N L + G+F +L +L +WL
Sbjct: 156 LTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPDGVFDRLTSLTHIWL 212
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 90/165 (54%), Gaps = 10/165 (6%)
Query: 407 ESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKT 466
E NS+D + A +N++++ ++ ++ +++ L GNKL +I L+ L +L
Sbjct: 39 ELNSIDQIIA------NNSDIKSVQ--GIQYLPNVRYLALGGNKLHDI-SALKELTNLTY 89
Query: 467 LDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVE 526
L L N + + N + L L L L EN + ++ GVF+KL+ LT L L N++Q +
Sbjct: 90 LILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLP 149
Query: 527 AGTFDNNSNLVAIRLDGNYLTDIG-GLFPKLPNLVWLNISENLLE 570
G FD +NL + LD N L + G+F KL L L++++N L+
Sbjct: 150 KGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLK 194
Score = 63.5 bits (153), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 60/114 (52%)
Query: 342 LHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNN 401
L L L + N++ L + +F L L+ L L NQ++S+ F L+NL L + +N
Sbjct: 84 LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHN 143
Query: 402 KLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIP 455
+L+ + D LT L+ L LDNN+L+ + E T L+ LN N+L +P
Sbjct: 144 QLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVP 197
Score = 57.0 bits (136), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 85/170 (50%), Gaps = 5/170 (2%)
Query: 376 NNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENAL 435
N+ I+S+ + L N+ L + NKL I ++L LT L+ L L N+L+ +
Sbjct: 50 NSDIKSVQGIQY--LPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVF 105
Query: 436 KNSTSLQDFHLNGNKLTEIPK-VLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLT 494
T+L++ L N+L +P V L +L L L N + + + L L L L
Sbjct: 106 DKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLD 165
Query: 495 ENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGN 544
N + ++ +GVF+KL+ L L+L N+++ V G FD ++L I L N
Sbjct: 166 NNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPDGVFDRLTSLTHIWLLNN 215
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 87/209 (41%), Gaps = 33/209 (15%)
Query: 198 LTQNKLSNVATFSFSNYDTARC-GI----NLRVLDLSNNSFDSLPAEGFSRLSRLQELYL 252
+TQN+L+++ +N D GI N+R L L N + A L+ L L L
Sbjct: 35 VTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISA--LKELTNLTYLIL 92
Query: 253 QGNILTFLADHALDGXXXXXXXXXXXXXXXXIPPELFNQSRDLKEVYLQNNSINVLAPGI 312
GN L L + D +P +F++ +L +YL +N + L G+
Sbjct: 93 TGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGV 152
Query: 313 FNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVL 372
F+ LT L LDL NN+L L +F L +L+ L
Sbjct: 153 FDKLTNLTRLDLDNNQL--------------------------QSLPEGVFDKLTQLKQL 186
Query: 373 HLENNQIESIHRNTFASLSNLHTLIMSNN 401
L +NQ++S+ F L++L + + NN
Sbjct: 187 SLNDNQLKSVPDGVFDRLTSLTHIWLLNN 215
Score = 50.4 bits (119), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 46/90 (51%), Gaps = 6/90 (6%)
Query: 177 NSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSL 236
N + +LPD +F L +L+YL L N+L ++ F NL LDL NN SL
Sbjct: 119 NQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKL------TNLTRLDLDNNQLQSL 172
Query: 237 PAEGFSRLSRLQELYLQGNILTFLADHALD 266
P F +L++L++L L N L + D D
Sbjct: 173 PEGVFDKLTQLKQLSLNDNQLKSVPDGVFD 202
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 71/159 (44%), Gaps = 34/159 (21%)
Query: 808 LYLDGNRIPVVGSHSFIGRKKLQ---ILFLNSSHVETIHNKTFNGLKELIILRLDDNRLT 864
L L GN++ H K+L L L + ++++ N F+ L L L L +N+L
Sbjct: 68 LALGGNKL-----HDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ 122
Query: 865 EIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSF--AVWHLSSQ 922
+ F++L NL LYL +N++ + F LT+L L LD+N++ S V+ +Q
Sbjct: 123 SLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQ 182
Query: 923 IQSITLT------------------------SNPWSCDC 937
++ ++L +NPW C C
Sbjct: 183 LKQLSLNDNQLKSVPDGVFDRLTSLTHIWLLNNPWDCAC 221
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 64/151 (42%), Gaps = 30/151 (19%)
Query: 177 NSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSL 236
N + +LP+ +F L +L L L +N+L ++ F NL L L +N SL
Sbjct: 95 NQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKL------TNLTYLYLYHNQLQSL 148
Query: 237 PAEGFSRLSRLQELYLQGNILTFLADHALDGXXXXXXXXXXXXXXXXIPPELFNQSRDLK 296
P F +L+ L L L N L L P +F++ LK
Sbjct: 149 PKGVFDKLTNLTRLDLDNNQLQSL------------------------PEGVFDKLTQLK 184
Query: 297 EVYLQNNSINVLAPGIFNVLTQLIVLDLSNN 327
++ L +N + + G+F+ LT L + L NN
Sbjct: 185 QLSLNDNQLKSVPDGVFDRLTSLTHIWLLNN 215
Score = 33.9 bits (76), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 42/80 (52%)
Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
T LYL N++ + F L L L+++ ++++ F+ L +L L L+DN+L
Sbjct: 136 TYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKS 195
Query: 866 IRGYEFERLENLRELYLQYN 885
+ F+RL +L ++L N
Sbjct: 196 VPDGVFDRLTSLTHIWLLNN 215
Score = 32.3 bits (72), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 80/180 (44%), Gaps = 41/180 (22%)
Query: 535 NLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISEL 594
N+ + L GN L DI L +L NL +L ++ N L+ + ++++ L
Sbjct: 64 NVRYLALGGNKLHDISAL-KELTNLTYLILTGNQLQSLPNGVF-----------DKLTNL 111
Query: 595 GNYFEIESQLRLTYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTR 654
+E+QL+ + D +KLT LT L+L +N + + F NLTR
Sbjct: 112 KELVLVENQLQ-SLPDGVFDKLTNLT---------YLYLYHNQLQSLPKGVFDKLTNLTR 161
Query: 655 VDLVGNRLKNINQ------TALRISPLPSH--KNIPD-----------FYIGENPFQCDC 695
+DL N+L+++ + T L+ L + K++PD ++ NP+ C C
Sbjct: 162 LDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPDGVFDRLTSLTHIWLLNNPWDCAC 221
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 66.6 bits (161), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 98/362 (27%), Positives = 155/362 (42%), Gaps = 68/362 (18%)
Query: 296 KEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKM 355
K V +N+++ L + + Q+ +L+L N+L E ++ F+ H + L + +N +
Sbjct: 54 KIVTFKNSTMRKLPAALLDSFRQVELLNL--NDLQIEEIDTYAFAYAHTIQKLYMGFNAI 111
Query: 356 NKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLT 415
L +F+++ L VL LE N + S+ R F + L TL MSNN L+RIE ++ + T
Sbjct: 112 RYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATT 171
Query: 416 ALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLIT 475
+L L L +N L +++ L+ IP + H+
Sbjct: 172 SLQNLQLSSNRLTHVD-------------------LSLIPSL---FHA------------ 197
Query: 476 EINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSN 535
N+S N L LA I V E L+ + N I V N
Sbjct: 198 ---NVSYNLLSTLA-----------IPIAVEE-------LDASHNSINVVRGPV---NVE 233
Query: 536 LVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYA--LIPADLQWLDIHGNQISE 593
L ++L N LTD L P LV +++S N LE Y + L+ L I N++
Sbjct: 234 LTILKLQHNNLTDTAWLL-NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA 292
Query: 594 LGNYFEIESQLRLTYFDASSNKLTELTGNAIPH--SVENLFLTNNLISKVQPYTFFMKPN 651
L Y + L++ D S N L + N P +ENL+L +N I ++ T N
Sbjct: 293 LNLYGQPIPTLKV--LDLSHNHLLHVERNQ-PQFDRLENLYLDHNSIVTLKLSTHHTLKN 349
Query: 652 LT 653
LT
Sbjct: 350 LT 351
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 68/291 (23%), Positives = 133/291 (45%), Gaps = 35/291 (12%)
Query: 389 SLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNG 448
+L+N + N+ ++++ + LDS + +L+L++ ++E I+ A + ++Q ++
Sbjct: 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGF 108
Query: 449 NKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEK 508
N + +P H + + L L L L N++S++ +G+F
Sbjct: 109 NAIRYLPP-----HVFQNVPL------------------LTVLVLERNDLSSLPRGIFHN 145
Query: 509 LSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENL 568
LT L++++N ++++E TF ++L ++L N LT + +P+L N+S NL
Sbjct: 146 TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNL 203
Query: 569 LEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPHSV 628
L IP ++ LD N I+ + +E LT N LT+ +
Sbjct: 204 LSTL---AIPIAVEELDASHNSINVVRGPVNVE----LTILKLQHNNLTDTAWLLNYPGL 256
Query: 629 ENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHK 679
+ L+ N + K+ + F L R+ + NRL +N L P+P+ K
Sbjct: 257 VEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALN---LYGQPIPTLK 304
Score = 53.5 bits (127), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 71/253 (28%), Positives = 119/253 (47%), Gaps = 27/253 (10%)
Query: 177 NSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSL 236
N+I LP +F + L+ L L +N LS++ F N L L +SNN+ + +
Sbjct: 109 NAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHN------TPKLTTLSMSNNNLERI 162
Query: 237 PAEGFSRLSRLQELYLQGNILTFLADHALDGXXXXXXXXXXXXXXXXIPPELFNQSRDLK 296
+ F + LQ L L N LT + D +L IP ++
Sbjct: 163 EDDTFQATTSLQNLQLSSNRLTHV-DLSLIPSLFHANVSYNLLSTLAIPIA-------VE 214
Query: 297 EVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTE-EWVNAATFSGLHRLVVLNIAYNKM 355
E+ +NSINV+ G NV +L +L L +N LT+ W+ + G LV ++++YN++
Sbjct: 215 ELDASHNSINVVR-GPVNV--ELTILKLQHNNLTDTAWL--LNYPG---LVEVDLSYNEL 266
Query: 356 NKLDSSIFKDLYRLQVLHLENNQIESIHRNTFAS-LSNLHTLIMSNNKLKRIESNSLDSL 414
K+ F + RL+ L++ NN++ ++ N + + L L +S+N L +E N
Sbjct: 267 EKIMYHPFVKMQRLERLYISNNRLVAL--NLYGQPIPTLKVLDLSHNHLLHVERNQ-PQF 323
Query: 415 TALSVLSLDNNEL 427
L L LD+N +
Sbjct: 324 DRLENLYLDHNSI 336
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 80/161 (49%), Gaps = 16/161 (9%)
Query: 834 LNSSHVETIHNKTFNGL--------KELIILRLDDNRLTEIRGYEFERLENLRELYLQYN 885
LN+ + T N T L +++ +L L+D ++ EI Y F +++LY+ +N
Sbjct: 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN 109
Query: 886 KIIYISNRTFLSLTHLKVLQLDHNRITSF--AVWHLSSQIQSITLTSNPWSCDCDFTEKF 943
I Y+ F ++ L VL L+ N ++S ++H + ++ ++++++N D T +
Sbjct: 110 AIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQA 169
Query: 944 RDYLQR-----SRSSVHDISQIRCMTGSEVGFTIMRTV-IP 978
LQ +R + D+S I + + V + ++ T+ IP
Sbjct: 170 TTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIP 210
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 55/242 (22%), Positives = 101/242 (41%), Gaps = 14/242 (5%)
Query: 284 IPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLH 343
+PP +F L + L+ N ++ L GIF+ +L L +SNN L E + TF
Sbjct: 114 LPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL--ERIEDDTFQATT 171
Query: 344 RLVVLNIAYNKMNKLDSSIFKDLYRLQV---------LHLENNQIESIHR--NTFASLSN 392
L L ++ N++ +D S+ L+ V + + ++++ H N N
Sbjct: 172 SLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVN 231
Query: 393 LHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLT 452
+ I+ ++ L + L + L NELE I + L+ +++ N+L
Sbjct: 232 VELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV 291
Query: 453 EIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVL 512
+ + + +LK LDL N + + + +L L L N+I + L L
Sbjct: 292 ALNLYGQPIPTLKVLDLSHNHLLHVER-NQPQFDRLENLYLDHNSIVTLKLSTHHTLKNL 350
Query: 513 TI 514
T+
Sbjct: 351 TL 352
Score = 33.1 bits (74), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 61/126 (48%), Gaps = 7/126 (5%)
Query: 834 LNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNR 893
L+ + +E I F ++ L L + +NRL + Y + + L+ L L +N ++++ R
Sbjct: 261 LSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYG-QPIPTLKVLDLSHNHLLHVE-R 318
Query: 894 TFLSLTHLKVLQLDHNRITSFAVWHLSSQIQSITLTSNPWSCDCDFTEKFRDYLQRSRSS 953
L+ L LDHN I + + ++++TL+ N W C+ FR+ +R +
Sbjct: 319 NQPQFDRLENLYLDHNSIVTLKLS-THHTLKNLTLSHNDWDCNS-LRALFRNV---ARPA 373
Query: 954 VHDISQ 959
V D Q
Sbjct: 374 VDDADQ 379
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 50/105 (47%)
Query: 808 LYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIR 867
L L+ +I + +++F +Q L++ + + + F + L +L L+ N L+ +
Sbjct: 80 LNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLP 139
Query: 868 GYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRIT 912
F L L + N + I + TF + T L+ LQL NR+T
Sbjct: 140 RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT 184
Score = 32.0 bits (71), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 58/134 (43%), Gaps = 7/134 (5%)
Query: 807 ELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEI 866
+LY+ N I + H F L +L L + + ++ F+ +L L + +N L I
Sbjct: 103 KLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERI 162
Query: 867 RGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSF----AVWHLSSQ 922
F+ +L+ L L N++ ++ SL H V +N +++ AV L +
Sbjct: 163 EDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANV---SYNLLSTLAIPIAVEELDAS 219
Query: 923 IQSITLTSNPWSCD 936
SI + P + +
Sbjct: 220 HNSINVVRGPVNVE 233
Score = 30.0 bits (66), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 797 LPPRIPMDA---TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKEL 853
LPP + + T L L+ N + + F KL L ++++++E I + TF L
Sbjct: 114 LPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSL 173
Query: 854 IILRLDDNRLTEI 866
L+L NRLT +
Sbjct: 174 QNLQLSSNRLTHV 186
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 66.6 bits (161), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 97/362 (26%), Positives = 153/362 (42%), Gaps = 68/362 (18%)
Query: 296 KEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKM 355
K V +N+++ L + + Q+ +L+L N+L E ++ F+ H + L + +N +
Sbjct: 48 KIVTFKNSTMRKLPAALLDSFRQVELLNL--NDLQIEEIDTYAFAYAHTIQKLYMGFNAI 105
Query: 356 NKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLT 415
L +F+++ L VL LE N + S+ R F + L TL MSNN L+RIE ++ + T
Sbjct: 106 RYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATT 165
Query: 416 ALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLIT 475
+L L L +N L +++ L+ IP +
Sbjct: 166 SLQNLQLSSNRLTHVD-------------------LSLIPSLFH---------------- 190
Query: 476 EINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSN 535
N+S N L LA I V E L+ + N I V N
Sbjct: 191 --ANVSYNLLSTLA-----------IPIAVEE-------LDASHNSINVVRGPV---NVE 227
Query: 536 LVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYA--LIPADLQWLDIHGNQISE 593
L ++L N LTD L P LV +++S N LE Y + L+ L I N++
Sbjct: 228 LTILKLQHNNLTDTAWLL-NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA 286
Query: 594 LGNYFEIESQLRLTYFDASSNKLTELTGNAIPH--SVENLFLTNNLISKVQPYTFFMKPN 651
L Y + L++ D S N L + N P +ENL+L +N I ++ T N
Sbjct: 287 LNLYGQPIPTLKV--LDLSHNHLLHVERNQ-PQFDRLENLYLDHNSIVTLKLSTHHTLKN 343
Query: 652 LT 653
LT
Sbjct: 344 LT 345
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 68/291 (23%), Positives = 133/291 (45%), Gaps = 35/291 (12%)
Query: 389 SLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNG 448
+L+N + N+ ++++ + LDS + +L+L++ ++E I+ A + ++Q ++
Sbjct: 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGF 102
Query: 449 NKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEK 508
N + +P H + + L L L L N++S++ +G+F
Sbjct: 103 NAIRYLPP-----HVFQNVPL------------------LTVLVLERNDLSSLPRGIFHN 139
Query: 509 LSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENL 568
LT L++++N ++++E TF ++L ++L N LT + +P+L N+S NL
Sbjct: 140 TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNL 197
Query: 569 LEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPHSV 628
L IP ++ LD N I+ + +E LT N LT+ +
Sbjct: 198 LSTL---AIPIAVEELDASHNSINVVRGPVNVE----LTILKLQHNNLTDTAWLLNYPGL 250
Query: 629 ENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHK 679
+ L+ N + K+ + F L R+ + NRL +N L P+P+ K
Sbjct: 251 VEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALN---LYGQPIPTLK 298
Score = 53.5 bits (127), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 76/268 (28%), Positives = 125/268 (46%), Gaps = 30/268 (11%)
Query: 177 NSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSL 236
N+I LP +F + L+ L L +N LS++ F N L L +SNN+ + +
Sbjct: 103 NAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHN------TPKLTTLSMSNNNLERI 156
Query: 237 PAEGFSRLSRLQELYLQGNILTFLADHALDGXXXXXXXXXXXXXXXXIPPELFNQSRDLK 296
+ F + LQ L L N LT + D +L IP ++
Sbjct: 157 EDDTFQATTSLQNLQLSSNRLTHV-DLSLIPSLFHANVSYNLLSTLAIPIA-------VE 208
Query: 297 EVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTE-EWVNAATFSGLHRLVVLNIAYNKM 355
E+ +NSINV+ G NV +L +L L +N LT+ W+ + G LV ++++YN++
Sbjct: 209 ELDASHNSINVVR-GPVNV--ELTILKLQHNNLTDTAWL--LNYPG---LVEVDLSYNEL 260
Query: 356 NKLDSSIFKDLYRLQVLHLENNQIESIHRNTFAS-LSNLHTLIMSNNKLKRIESNSLDSL 414
K+ F + RL+ L++ NN++ ++ N + + L L +S+N L +E N
Sbjct: 261 EKIMYHPFVKMQRLERLYISNNRLVAL--NLYGQPIPTLKVLDLSHNHLLHVERNQ-PQF 317
Query: 415 TALSVLSLDNNE---LEYIEENALKNST 439
L L LD+N L+ + LKN T
Sbjct: 318 DRLENLYLDHNSIVTLKLSTHHTLKNLT 345
Score = 43.5 bits (101), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 63/304 (20%), Positives = 120/304 (39%), Gaps = 14/304 (4%)
Query: 222 NLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGXXXXXXXXXXXXXX 281
N +++ N++ LPA +++ L L + + +A
Sbjct: 46 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAI 105
Query: 282 XXIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSG 341
+PP +F L + L+ N ++ L GIF+ +L L +SNN L E + TF
Sbjct: 106 RYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL--ERIEDDTFQA 163
Query: 342 LHRLVVLNIAYNKMNKLDSSIFKDLYRLQV---------LHLENNQIESIHR--NTFASL 390
L L ++ N++ +D S+ L+ V + + ++++ H N
Sbjct: 164 TTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGP 223
Query: 391 SNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNK 450
N+ I+ ++ L + L + L NELE I + L+ +++ N+
Sbjct: 224 VNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR 283
Query: 451 LTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLS 510
L + + + +LK LDL N + + + +L L L N+I + L
Sbjct: 284 LVALNLYGQPIPTLKVLDLSHNHLLHVER-NQPQFDRLENLYLDHNSIVTLKLSTHHTLK 342
Query: 511 VLTI 514
LT+
Sbjct: 343 NLTL 346
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 80/161 (49%), Gaps = 16/161 (9%)
Query: 834 LNSSHVETIHNKTFNGL--------KELIILRLDDNRLTEIRGYEFERLENLRELYLQYN 885
LN+ + T N T L +++ +L L+D ++ EI Y F +++LY+ +N
Sbjct: 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN 103
Query: 886 KIIYISNRTFLSLTHLKVLQLDHNRITSF--AVWHLSSQIQSITLTSNPWSCDCDFTEKF 943
I Y+ F ++ L VL L+ N ++S ++H + ++ ++++++N D T +
Sbjct: 104 AIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQA 163
Query: 944 RDYLQR-----SRSSVHDISQIRCMTGSEVGFTIMRTV-IP 978
LQ +R + D+S I + + V + ++ T+ IP
Sbjct: 164 TTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIP 204
Score = 34.3 bits (77), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 61/126 (48%), Gaps = 7/126 (5%)
Query: 834 LNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNR 893
L+ + +E I F ++ L L + +NRL + Y + + L+ L L +N ++++ R
Sbjct: 255 LSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYG-QPIPTLKVLDLSHNHLLHVE-R 312
Query: 894 TFLSLTHLKVLQLDHNRITSFAVWHLSSQIQSITLTSNPWSCDCDFTEKFRDYLQRSRSS 953
L+ L LDHN I + + ++++TL+ N W C+ FR+ +R +
Sbjct: 313 NQPQFDRLENLYLDHNSIVTLKLS-THHTLKNLTLSHNDWDCNS-LRALFRNV---ARPA 367
Query: 954 VHDISQ 959
V D Q
Sbjct: 368 VDDADQ 373
Score = 33.9 bits (76), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 50/105 (47%)
Query: 808 LYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIR 867
L L+ +I + +++F +Q L++ + + + F + L +L L+ N L+ +
Sbjct: 74 LNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLP 133
Query: 868 GYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRIT 912
F L L + N + I + TF + T L+ LQL NR+T
Sbjct: 134 RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT 178
Score = 33.1 bits (74), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 50/110 (45%), Gaps = 3/110 (2%)
Query: 807 ELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEI 866
+LY+ N I + H F L +L L + + ++ F+ +L L + +N L I
Sbjct: 97 KLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERI 156
Query: 867 RGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAV 916
F+ +L+ L L N++ ++ SL H V +N +++ A+
Sbjct: 157 EDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANV---SYNLLSTLAI 203
Score = 30.0 bits (66), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 797 LPPRIPMDA---TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKEL 853
LPP + + T L L+ N + + F KL L ++++++E I + TF L
Sbjct: 108 LPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSL 167
Query: 854 IILRLDDNRLTEI 866
L+L NRLT +
Sbjct: 168 QNLQLSSNRLTHV 180
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 108/441 (24%), Positives = 186/441 (42%), Gaps = 48/441 (10%)
Query: 192 SLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELY 251
S+ L+L+ ++LS + +F NL +LDLS N+ + + + F+ L +L+ +
Sbjct: 233 SIRNLSLSNSQLSTTSNTTFLGLKWT----NLTMLDLSYNNLNVVGNDSFAWLPQLEYFF 288
Query: 252 LQGNILTFLADHALDG---------XXXXXXXXXXXXXXXXIPPELFNQSRDLKEVYLQN 302
L+ N + L H+L G I F + L+ + +++
Sbjct: 289 LEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMED 348
Query: 303 NSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHR--LVVLNIAYNKMNKLDS 360
N I + +F L L L LSN+ + + TF L L +LN+ NK++K++S
Sbjct: 349 NDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIES 408
Query: 361 SIFKDLYRLQVLHLENNQI-ESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSV 419
F L L+VL L N+I + + + L N+ + +S NK ++ NS + +L
Sbjct: 409 DAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQR 468
Query: 420 LSLDNNELEYIEENA-----LKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLI 474
L L L+ ++ + L+N T L D N +L L L+ LDL N +
Sbjct: 469 LMLRRVALKNVDSSPSPFQPLRNLTIL-DLSNNNIANIND-DMLEGLEKLEILDLQHNNL 526
Query: 475 TEINNLS--------LNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVE 526
+ + L L L L L N I VF+ L L I++L N + +
Sbjct: 527 ARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLP 586
Query: 527 AGTFDNNSNLVAIRLDGNYLTDIGG--LFPKLPNLVWLNISENLLE-------WFDYALI 577
A F+N +L ++ L N +T + P NL L++ N + WF
Sbjct: 587 ASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWF----- 641
Query: 578 PADLQWLDIHGNQISELGNYF 598
+ W++ I EL +++
Sbjct: 642 ---VNWINETHTNIPELSSHY 659
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 73/264 (27%), Positives = 134/264 (50%), Gaps = 19/264 (7%)
Query: 317 TQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLEN 376
T + VL+L++N+L + AA F+ +L L++ +N ++KL+ + + L L+VL+L++
Sbjct: 35 TNITVLNLTHNQLRR--LPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQH 92
Query: 377 NQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALK 436
N++ + TFA +NL L + +N +++I++N L L L +N L +
Sbjct: 93 NELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQV 152
Query: 437 NSTSLQDFHLNGNKL----TEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLR 492
+LQ+ L+ NK+ +E + N SLK L+L N I E + +++ +L GL
Sbjct: 153 QLENLQELLLSNNKIQALKSEELDIFAN-SSLKKLELSSNQIKEFSPGCFHAIGRLFGLF 211
Query: 493 LTENNISNISKGVFEKLSV------LTILNLASNKIQKVEAGTFDNN--SNLVAIRLDGN 544
L NN+ + + EKL + + L+L+++++ TF +NL + L N
Sbjct: 212 L--NNVQ-LGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYN 268
Query: 545 YLTDIGG-LFPKLPNLVWLNISEN 567
L +G F LP L + + N
Sbjct: 269 NLNVVGNDSFAWLPQLEYFFLEYN 292
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 125/480 (26%), Positives = 203/480 (42%), Gaps = 52/480 (10%)
Query: 222 NLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGXXXXXXXXXXXXXX 281
N+ VL+L++N LPA F+R S+L L + N ++ L
Sbjct: 36 NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL 95
Query: 282 XXIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSG 341
+ + F +L E++L +NSI + F LI LDLS+N L+ T
Sbjct: 96 SQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS--TKLGTQVQ 153
Query: 342 LHRLVVLNIAYNKMNKLDSS---IFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIM 398
L L L ++ NK+ L S IF + L+ L L +NQI+ F ++ L L +
Sbjct: 154 LENLQELLLSNNKIQALKSEELDIFAN-SSLKKLELSSNQIKEFSPGCFHAIGRLFGLFL 212
Query: 399 SNNKLKRIESNSLDSLTALSVLSLDNNELEYIE-ENALKNSTSLQDFHLNGNKLTEIPKV 457
+N +L SLT L L N + + N+ ++TS F G K T
Sbjct: 213 NNVQLG-------PSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFL--GLKWT----- 258
Query: 458 LRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNL 517
+L LDL N + + N S L QL L NNI ++ L + LNL
Sbjct: 259 -----NLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNL 313
Query: 518 ASN---------KIQKVEAGTFDNNSNLVAIRLDGNYLTDI-GGLFPKLPNLVWLNISEN 567
+ + K++ +F L + ++ N + I +F L NL +L++S +
Sbjct: 314 KRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNS 373
Query: 568 LL-------EWFDYALIPADLQWLDIHGNQISEL-GNYFEIESQLRLTYFDASSNKL-TE 618
E F +L + L L++ N+IS++ + F L + D N++ E
Sbjct: 374 FTSLRTLTNETF-VSLAHSPLHILNLTKNKISKIESDAFSWLGHLEV--LDLGLNEIGQE 430
Query: 619 LTGNAIPHSVENLF---LTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPL 675
LTG +EN+F L+ N ++ +F + P+L R+ L LKN++ + PL
Sbjct: 431 LTGQEW-RGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPL 489
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 65/241 (26%), Positives = 107/241 (44%), Gaps = 17/241 (7%)
Query: 178 SIWTLPDAIFCPL--QSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSF-D 234
S+ TL + F L L LNLT+NK+S + + +FS +L VLDL N
Sbjct: 376 SLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLG------HLEVLDLGLNEIGQ 429
Query: 235 SLPAEGFSRLSRLQELYLQGNILTFLADH--ALDGXXXXXXXXXXXXXXXXIPPELFNQS 292
L + + L + E+YL N L + AL P F
Sbjct: 430 ELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPL 489
Query: 293 RDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAAT------FSGLHRLV 346
R+L + L NN+I + + L +L +LDL +N L W +A GL L
Sbjct: 490 RNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLH 549
Query: 347 VLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRI 406
+LN+ N +++ +FKDL+ L+++ L N + ++ + F + +L +L + N + +
Sbjct: 550 ILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSV 609
Query: 407 E 407
E
Sbjct: 610 E 610
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 65/141 (46%), Gaps = 7/141 (4%)
Query: 773 CTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQIL 832
CT H+V+ DCS Q+P +P + T L L N++ + + +F +L L
Sbjct: 12 CTVSHEVA------DCSHLKL-TQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSL 64
Query: 833 FLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISN 892
+ + + + + L L +L L N L+++ F NL EL+L N I I N
Sbjct: 65 DVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKN 124
Query: 893 RTFLSLTHLKVLQLDHNRITS 913
F+ +L L L HN ++S
Sbjct: 125 NPFVKQKNLITLDLSHNGLSS 145
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 150/640 (23%), Positives = 250/640 (39%), Gaps = 139/640 (21%)
Query: 193 LSYLNLTQNKLSNVATFSFSNYD---TARCGIN---------------LRVLDLSNNSFD 234
++ LNLT N+L + +F+ Y + G N L+VL+L +N
Sbjct: 37 ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 96
Query: 235 SLPAEGFSRLSRLQELYL---------------QGNILTF------LADHALDGXXXXXX 273
L + F+ + L EL+L Q N++T L+ L
Sbjct: 97 QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLEN 156
Query: 274 XXXXXXXXXXIPP------ELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNN 327
I ++F S LK++ L +N I +PG F+ + +L L L+N
Sbjct: 157 LQELLLSNNKIQALKSEELDIFANS-SLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNV 215
Query: 328 EL----TE----EWVNAA-----------------TFSGLH--RLVVLNIAYNKMNKLDS 360
+L TE E N + TF GL L +L+++YN +N + +
Sbjct: 216 QLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGN 275
Query: 361 SIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNN---------KLKRIESNSL 411
F L +L+ LE N I+ + ++ L N+ L + + L +I+ S
Sbjct: 276 DSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSF 335
Query: 412 DSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGD 471
L L L++++N++ I+ N +L+ L N T SL+TL +
Sbjct: 336 QWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSL-SNSFT----------SLRTLT-NE 383
Query: 472 NLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKI-QKVEAGTF 530
++ L+ + LH L LT+N IS I F L L +L+L N+I Q++ +
Sbjct: 384 TFVS----LAHSPLHIL---NLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEW 436
Query: 531 DNNSNLVAIRLDGN-YLTDIGGLFPKLPNLVWLNISENLLEWFDYALIP----ADLQWLD 585
N+ I L N YL F +P+L L + L+ D + P +L LD
Sbjct: 437 RGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILD 496
Query: 586 IHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPHS----------VENLFLTN 635
+ N I+ + + +E +L D N L L +A P + L L +
Sbjct: 497 LSNNNIANINDDM-LEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLES 555
Query: 636 NLISKVQPYTFFMKPNLTRVDLVGNRLKNI------NQTALRISPL-------------- 675
N ++ F L +DL N L + NQ +L+ L
Sbjct: 556 NGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFG 615
Query: 676 PSHKNIPDFYIGENPFQCDC-NMQWLQSYSVNKERNKPNL 714
P+ +N+ + + NPF C C ++ W ++ N P L
Sbjct: 616 PAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPEL 655
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 824 IGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRL-TEIRGYEFERLENLRELYL 882
+ L IL L + + I + F+ L L +L L N + E+ G E+ LEN+ E+YL
Sbjct: 388 LAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYL 447
Query: 883 QYNKIIYISNRTFLSLTHLKVLQL 906
YNK + ++ +F + L+ L L
Sbjct: 448 SYNKYLQLTRNSFALVPSLQRLML 471
Score = 37.7 bits (86), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 52/113 (46%), Gaps = 3/113 (2%)
Query: 849 GLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDH 908
GL L IL L+ N EI F+ L L+ + L N + + F + LK L L
Sbjct: 544 GLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQK 603
Query: 909 NRITSFAVWHLSSQIQSIT---LTSNPWSCDCDFTEKFRDYLQRSRSSVHDIS 958
N ITS +++T + NP+ C C+ F +++ + +++ ++S
Sbjct: 604 NLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELS 656
Score = 35.8 bits (81), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 56/118 (47%), Gaps = 10/118 (8%)
Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDN---- 861
T L L N + VVG+ SF +L+ FL ++++ + + + +GL + L L +
Sbjct: 261 TMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQ 320
Query: 862 -----RLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSF 914
L +I + F+ L+ L L ++ N I I + F L +LK L L N TS
Sbjct: 321 SISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLS-NSFTSL 377
Score = 31.2 bits (69), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 44/102 (43%), Gaps = 6/102 (5%)
Query: 815 IPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERL 874
+P + SF K L+ L + + + I + F GL L L L N T +R E
Sbjct: 327 LPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLS-NSFTSLRTLTNETF 385
Query: 875 ENLRE-----LYLQYNKIIYISNRTFLSLTHLKVLQLDHNRI 911
+L L L NKI I + F L HL+VL L N I
Sbjct: 386 VSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEI 427
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 108/441 (24%), Positives = 186/441 (42%), Gaps = 48/441 (10%)
Query: 192 SLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELY 251
S+ L+L+ ++LS + +F NL +LDLS N+ + + + F+ L +L+ +
Sbjct: 228 SIRNLSLSNSQLSTTSNTTFLGLKWT----NLTMLDLSYNNLNVVGNDSFAWLPQLEYFF 283
Query: 252 LQGNILTFLADHALDG---------XXXXXXXXXXXXXXXXIPPELFNQSRDLKEVYLQN 302
L+ N + L H+L G I F + L+ + +++
Sbjct: 284 LEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMED 343
Query: 303 NSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHR--LVVLNIAYNKMNKLDS 360
N I + +F L L L LSN+ + + TF L L +LN+ NK++K++S
Sbjct: 344 NDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIES 403
Query: 361 SIFKDLYRLQVLHLENNQI-ESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSV 419
F L L+VL L N+I + + + L N+ + +S NK ++ NS + +L
Sbjct: 404 DAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQR 463
Query: 420 LSLDNNELEYIEENA-----LKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLI 474
L L L+ ++ + L+N T L D N +L L L+ LDL N +
Sbjct: 464 LMLRRVALKNVDSSPSPFQPLRNLTIL-DLSNNNIANIND-DMLEGLEKLEILDLQHNNL 521
Query: 475 TEINNLS--------LNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVE 526
+ + L L L L L N I VF+ L L I++L N + +
Sbjct: 522 ARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLP 581
Query: 527 AGTFDNNSNLVAIRLDGNYLTDIGG--LFPKLPNLVWLNISENLLE-------WFDYALI 577
A F+N +L ++ L N +T + P NL L++ N + WF
Sbjct: 582 ASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWF----- 636
Query: 578 PADLQWLDIHGNQISELGNYF 598
+ W++ I EL +++
Sbjct: 637 ---VNWINETHTNIPELSSHY 654
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 73/264 (27%), Positives = 134/264 (50%), Gaps = 19/264 (7%)
Query: 317 TQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLEN 376
T + VL+L++N+L + AA F+ +L L++ +N ++KL+ + + L L+VL+L++
Sbjct: 30 TNITVLNLTHNQLRR--LPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQH 87
Query: 377 NQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALK 436
N++ + TFA +NL L + +N +++I++N L L L +N L +
Sbjct: 88 NELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQV 147
Query: 437 NSTSLQDFHLNGNKL----TEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLR 492
+LQ+ L+ NK+ +E + N SLK L+L N I E + +++ +L GL
Sbjct: 148 QLENLQELLLSNNKIQALKSEELDIFAN-SSLKKLELSSNQIKEFSPGCFHAIGRLFGLF 206
Query: 493 LTENNISNISKGVFEKLSV------LTILNLASNKIQKVEAGTFDNN--SNLVAIRLDGN 544
L NN+ + + EKL + + L+L+++++ TF +NL + L N
Sbjct: 207 L--NNVQ-LGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYN 263
Query: 545 YLTDIGG-LFPKLPNLVWLNISEN 567
L +G F LP L + + N
Sbjct: 264 NLNVVGNDSFAWLPQLEYFFLEYN 287
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 125/480 (26%), Positives = 203/480 (42%), Gaps = 52/480 (10%)
Query: 222 NLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGXXXXXXXXXXXXXX 281
N+ VL+L++N LPA F+R S+L L + N ++ L
Sbjct: 31 NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL 90
Query: 282 XXIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSG 341
+ + F +L E++L +NSI + F LI LDLS+N L+ T
Sbjct: 91 SQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS--TKLGTQVQ 148
Query: 342 LHRLVVLNIAYNKMNKLDSS---IFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIM 398
L L L ++ NK+ L S IF + L+ L L +NQI+ F ++ L L +
Sbjct: 149 LENLQELLLSNNKIQALKSEELDIFAN-SSLKKLELSSNQIKEFSPGCFHAIGRLFGLFL 207
Query: 399 SNNKLKRIESNSLDSLTALSVLSLDNNELEYIE-ENALKNSTSLQDFHLNGNKLTEIPKV 457
+N +L SLT L L N + + N+ ++TS F G K T
Sbjct: 208 NNVQLG-------PSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFL--GLKWT----- 253
Query: 458 LRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNL 517
+L LDL N + + N S L QL L NNI ++ L + LNL
Sbjct: 254 -----NLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNL 308
Query: 518 ASN---------KIQKVEAGTFDNNSNLVAIRLDGNYLTDI-GGLFPKLPNLVWLNISEN 567
+ + K++ +F L + ++ N + I +F L NL +L++S +
Sbjct: 309 KRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNS 368
Query: 568 LL-------EWFDYALIPADLQWLDIHGNQISEL-GNYFEIESQLRLTYFDASSNKL-TE 618
E F +L + L L++ N+IS++ + F L + D N++ E
Sbjct: 369 FTSLRTLTNETF-VSLAHSPLHILNLTKNKISKIESDAFSWLGHLEV--LDLGLNEIGQE 425
Query: 619 LTGNAIPHSVENLF---LTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPL 675
LTG +EN+F L+ N ++ +F + P+L R+ L LKN++ + PL
Sbjct: 426 LTGQEW-RGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPL 484
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 65/241 (26%), Positives = 107/241 (44%), Gaps = 17/241 (7%)
Query: 178 SIWTLPDAIFCPL--QSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSF-D 234
S+ TL + F L L LNLT+NK+S + + +FS +L VLDL N
Sbjct: 371 SLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLG------HLEVLDLGLNEIGQ 424
Query: 235 SLPAEGFSRLSRLQELYLQGNILTFLADH--ALDGXXXXXXXXXXXXXXXXIPPELFNQS 292
L + + L + E+YL N L + AL P F
Sbjct: 425 ELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPL 484
Query: 293 RDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAAT------FSGLHRLV 346
R+L + L NN+I + + L +L +LDL +N L W +A GL L
Sbjct: 485 RNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLH 544
Query: 347 VLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRI 406
+LN+ N +++ +FKDL+ L+++ L N + ++ + F + +L +L + N + +
Sbjct: 545 ILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSV 604
Query: 407 E 407
E
Sbjct: 605 E 605
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 65/141 (46%), Gaps = 7/141 (4%)
Query: 773 CTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQIL 832
CT H+V+ DCS Q+P +P + T L L N++ + + +F +L L
Sbjct: 7 CTVSHEVA------DCSHLKL-TQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSL 59
Query: 833 FLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISN 892
+ + + + + L L +L L N L+++ F NL EL+L N I I N
Sbjct: 60 DVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKN 119
Query: 893 RTFLSLTHLKVLQLDHNRITS 913
F+ +L L L HN ++S
Sbjct: 120 NPFVKQKNLITLDLSHNGLSS 140
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 150/640 (23%), Positives = 250/640 (39%), Gaps = 139/640 (21%)
Query: 193 LSYLNLTQNKLSNVATFSFSNYD---TARCGIN---------------LRVLDLSNNSFD 234
++ LNLT N+L + +F+ Y + G N L+VL+L +N
Sbjct: 32 ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 91
Query: 235 SLPAEGFSRLSRLQELYL---------------QGNILTF------LADHALDGXXXXXX 273
L + F+ + L EL+L Q N++T L+ L
Sbjct: 92 QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLEN 151
Query: 274 XXXXXXXXXXIPP------ELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNN 327
I ++F S LK++ L +N I +PG F+ + +L L L+N
Sbjct: 152 LQELLLSNNKIQALKSEELDIFANS-SLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNV 210
Query: 328 EL----TE----EWVNAA-----------------TFSGLH--RLVVLNIAYNKMNKLDS 360
+L TE E N + TF GL L +L+++YN +N + +
Sbjct: 211 QLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGN 270
Query: 361 SIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNN---------KLKRIESNSL 411
F L +L+ LE N I+ + ++ L N+ L + + L +I+ S
Sbjct: 271 DSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSF 330
Query: 412 DSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGD 471
L L L++++N++ I+ N +L+ L N T SL+TL +
Sbjct: 331 QWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSL-SNSFT----------SLRTLT-NE 378
Query: 472 NLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKI-QKVEAGTF 530
++ L+ + LH L LT+N IS I F L L +L+L N+I Q++ +
Sbjct: 379 TFVS----LAHSPLHIL---NLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEW 431
Query: 531 DNNSNLVAIRLDGN-YLTDIGGLFPKLPNLVWLNISENLLEWFDYALIP----ADLQWLD 585
N+ I L N YL F +P+L L + L+ D + P +L LD
Sbjct: 432 RGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILD 491
Query: 586 IHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPHS----------VENLFLTN 635
+ N I+ + + +E +L D N L L +A P + L L +
Sbjct: 492 LSNNNIANINDDM-LEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLES 550
Query: 636 NLISKVQPYTFFMKPNLTRVDLVGNRLKNI------NQTALRISPL-------------- 675
N ++ F L +DL N L + NQ +L+ L
Sbjct: 551 NGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFG 610
Query: 676 PSHKNIPDFYIGENPFQCDC-NMQWLQSYSVNKERNKPNL 714
P+ +N+ + + NPF C C ++ W ++ N P L
Sbjct: 611 PAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPEL 650
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 824 IGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRL-TEIRGYEFERLENLRELYL 882
+ L IL L + + I + F+ L L +L L N + E+ G E+ LEN+ E+YL
Sbjct: 383 LAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYL 442
Query: 883 QYNKIIYISNRTFLSLTHLKVLQL 906
YNK + ++ +F + L+ L L
Sbjct: 443 SYNKYLQLTRNSFALVPSLQRLML 466
Score = 37.4 bits (85), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 52/113 (46%), Gaps = 3/113 (2%)
Query: 849 GLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDH 908
GL L IL L+ N EI F+ L L+ + L N + + F + LK L L
Sbjct: 539 GLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQK 598
Query: 909 NRITSFAVWHLSSQIQSIT---LTSNPWSCDCDFTEKFRDYLQRSRSSVHDIS 958
N ITS +++T + NP+ C C+ F +++ + +++ ++S
Sbjct: 599 NLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELS 651
Score = 35.4 bits (80), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 57/120 (47%), Gaps = 10/120 (8%)
Query: 804 DATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDN-- 861
+ T L L N + VVG+ SF +L+ FL ++++ + + + +GL + L L +
Sbjct: 254 NLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFT 313
Query: 862 -------RLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSF 914
L +I + F+ L+ L L ++ N I I + F L +LK L L N TS
Sbjct: 314 KQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLS-NSFTSL 372
Score = 31.2 bits (69), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 44/102 (43%), Gaps = 6/102 (5%)
Query: 815 IPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERL 874
+P + SF K L+ L + + + I + F GL L L L N T +R E
Sbjct: 322 LPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLS-NSFTSLRTLTNETF 380
Query: 875 ENLRE-----LYLQYNKIIYISNRTFLSLTHLKVLQLDHNRI 911
+L L L NKI I + F L HL+VL L N I
Sbjct: 381 VSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEI 422
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 75/155 (48%), Gaps = 11/155 (7%)
Query: 829 LQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKII 888
L+ L L + + I + F GL L+ L L N L I FE L+ L L L YN I
Sbjct: 301 LEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIR 360
Query: 889 YISNRTFLSLTHLKVLQLDHNRITSF--AVWHLSSQIQSITLTSNPWSCDCDFTEKFRDY 946
+ +++FL L +LK L LD N++ S ++ + +Q I L +NPW C C DY
Sbjct: 361 ALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI----DY 416
Query: 947 LQR--SRSSVHDISQIRCMTGSEVGFTIMRTVIPS 979
L R +++S + +C S G + + P+
Sbjct: 417 LSRWLNKNSQKEQGSAKC---SGSGKPVRSIICPT 448
Score = 53.1 bits (126), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 61/114 (53%), Gaps = 2/114 (1%)
Query: 288 LFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVV 347
+F+ DL+++ L N IN + F LT L+ L+LS N L +++ F L +L V
Sbjct: 294 VFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGS--IDSRMFENLDKLEV 351
Query: 348 LNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNN 401
L+++YN + L F L L+ L L+ NQ++S+ F L++L + + N
Sbjct: 352 LDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 92/209 (44%), Gaps = 20/209 (9%)
Query: 317 TQLIVLDLSNNELTE----EWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVL 372
T + LDLS N E + +A + + L++ N +YN + + FKD
Sbjct: 212 TSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSN-SYNMGSSFGHTNFKDPDNFTFK 270
Query: 373 HLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEE 432
LE S + T +S +K+ + + T L L+L NE+ I++
Sbjct: 271 GLE--------------ASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDD 316
Query: 433 NALKNSTSLQDFHLNGNKLTEI-PKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGL 491
NA T L +L+ N L I ++ NL L+ LDL N I + + S L L L
Sbjct: 317 NAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKEL 376
Query: 492 RLTENNISNISKGVFEKLSVLTILNLASN 520
L N + ++ G+F++L+ L + L +N
Sbjct: 377 ALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 88/338 (26%), Positives = 147/338 (43%), Gaps = 59/338 (17%)
Query: 289 FNQSRDLKEVYLQNNSIN-VLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVV 347
F++ +DL+ + ++ + V+ F L+ LI+L L N+ + + F+GL L V
Sbjct: 50 FSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQ--LETGAFNGLANLEV 107
Query: 348 LNIAYNKMNK--LDSSIFKDLYRLQVLHLENNQIESIHRNTF-ASLSNLHTLIMSNNKLK 404
L + ++ L + FK L L++L L +N I+ I +F ++ H L ++ NK+K
Sbjct: 108 LTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK 167
Query: 405 RI-ESNSLD------SLTALSVLSL-DNNELEYIEE---NALKNSTSLQDFHLNGNKLTE 453
I E + L+ +L LS ++L D NE E N KN TS+ L+GN E
Sbjct: 168 SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKN-TSITTLDLSGNGFKE 226
Query: 454 -IPK--------------VLRNLHSL-------------------------KTLDLGDNL 473
+ K +L N +++ KT DL +
Sbjct: 227 SMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSK 286
Query: 474 ITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNN 533
I + + L L L +N I+ I F L+ L LNL+ N + +++ F+N
Sbjct: 287 IFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENL 346
Query: 534 SNLVAIRLDGNYLTDIGGL-FPKLPNLVWLNISENLLE 570
L + L N++ +G F LPNL L + N L+
Sbjct: 347 DKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK 384
Score = 43.5 bits (101), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 57/135 (42%), Gaps = 10/135 (7%)
Query: 787 DCSTGGYDN-------QLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHV 839
+CS GY+ P +P + L N I + SF + LQ L +
Sbjct: 7 ECSVIGYNAICINRGLHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTP 66
Query: 840 E-TIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKI--IYISNRTFL 896
I N TF GL LIIL+LD N+ ++ F L NL L L + +S F
Sbjct: 67 GLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFK 126
Query: 897 SLTHLKVLQLDHNRI 911
LT L++L L N I
Sbjct: 127 PLTSLEMLVLRDNNI 141
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 45/79 (56%)
Query: 807 ELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEI 866
+L L N + + S F KL++L L+ +H+ + +++F GL L L LD N+L +
Sbjct: 327 KLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSV 386
Query: 867 RGYEFERLENLRELYLQYN 885
F+RL +L++++L N
Sbjct: 387 PDGIFDRLTSLQKIWLHTN 405
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 97/398 (24%), Positives = 168/398 (42%), Gaps = 60/398 (15%)
Query: 176 MNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDS 235
+NSI L + F LQ L +L + Q V +T R +L +L L N F
Sbjct: 39 LNSIAELNETSFSRLQDLQFLKVEQQTPGLVI-----RNNTFRGLSSLIILKLDYNQFLQ 93
Query: 236 LPAEGFSRLSRLQELYLQGNILTFLADHALDGXXXXXXXXXXXXXXXXIPPELFNQSRDL 295
L F+ L+ L+ +LT L LDG + F L
Sbjct: 94 LETGAFNGLANLE-------VLT-LTQCNLDGAV--------------LSGNFFKPLTSL 131
Query: 296 KEVYLQNNSINVLAPGIFNV-LTQLIVLDLSNNELT----EEWVNAATFSGLH--RLVVL 348
+ + L++N+I + P F + + + VLDL+ N++ E+ +N F G H L +
Sbjct: 132 EMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLN---FQGKHFTLLRLS 188
Query: 349 NIAYNKMNKL------DSSIFKDLYRLQVLHLENNQI-ESIHRNTFASLSN--LHTLIMS 399
+I MN+ + FK+ + L L N ES+ + F +++ + +LI+S
Sbjct: 189 SITLQDMNEYWLGWEKCGNPFKN-TSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILS 247
Query: 400 NN----------KLKRIESNSLDSLTALSVLSLD--NNELEYIEENALKNSTSLQDFHLN 447
N+ K ++ + L A V + D +++ + ++ + T L+ L
Sbjct: 248 NSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLA 307
Query: 448 GNKLTEIP-KVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVF 506
N++ +I L L L+L N + I++ +L +L L L+ N+I + F
Sbjct: 308 QNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSF 367
Query: 507 EKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGN 544
L L L L +N+++ V G FD ++L I L N
Sbjct: 368 LGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405
Score = 30.8 bits (68), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 48/84 (57%), Gaps = 21/84 (25%)
Query: 627 SVENLFLTNNLISKVQPYTFFMKPNLTR---VDLVGNRLKNINQ-----------TALRI 672
S+E L L +N I K+QP +FF+ N+ R +DL N++K+I + T LR+
Sbjct: 130 SLEMLVLRDNNIKKIQPASFFL--NMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRL 187
Query: 673 SPLPSHKNIPDFYIG----ENPFQ 692
S + + +++ ++++G NPF+
Sbjct: 188 SSI-TLQDMNEYWLGWEKCGNPFK 210
Score = 30.0 bits (66), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 55/137 (40%), Gaps = 15/137 (10%)
Query: 792 GYDNQLPPRIPMDATELYLDGNRIPVVGSHSF---IGRKKLQILFLNSSH---------- 838
G++ P T L L GN + F I K+Q L L++S+
Sbjct: 201 GWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTN 260
Query: 839 VETIHNKTFNGLKELIILRLD--DNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFL 896
+ N TF GL+ + D +++ + F +L +L L N+I I + F
Sbjct: 261 FKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFW 320
Query: 897 SLTHLKVLQLDHNRITS 913
LTHL L L N + S
Sbjct: 321 GLTHLLKLNLSQNFLGS 337
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 110/444 (24%), Positives = 187/444 (42%), Gaps = 54/444 (12%)
Query: 192 SLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELY 251
S+ L+L+ ++LS + +F NL +LDLS N+ + + + F+ L +L+ +
Sbjct: 223 SIRNLSLSNSQLSTTSNTTFLGLKWT----NLTMLDLSYNNLNVVGNDSFAWLPQLEYFF 278
Query: 252 LQGNILTFLADHALDG---------XXXXXXXXXXXXXXXXIPPELFNQSRDLKEVYLQN 302
L+ N + L H+L G I F + L+ + +++
Sbjct: 279 LEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMED 338
Query: 303 NSINVLAPGIFNVLTQLIVLDLSNN-----ELTEEWVNAATFSGLHRLVVLNIAYNKMNK 357
N I + +F L L L LSN+ LT E + S LH +LN+ NK++K
Sbjct: 339 NDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLH---ILNLTKNKISK 395
Query: 358 LDSSIFKDLYRLQVLHLENNQI-ESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTA 416
++S F L L+VL L N+I + + + L N+ + +S NK ++ NS + +
Sbjct: 396 IESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPS 455
Query: 417 LSVLSLDNNELEYIEENA-----LKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGD 471
L L L L+ ++ + L+N T L D N +L L L+ LDL
Sbjct: 456 LQRLMLRRVALKNVDSSPSPFQPLRNLTIL-DLSNNNIANIND-DMLEGLEKLEILDLQH 513
Query: 472 NLITEINNLS--------LNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQ 523
N + + + L L L L L N I VF+ L L I++L N +
Sbjct: 514 NNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLN 573
Query: 524 KVEAGTFDNNSNLVAIRLDGNYLTDIGG--LFPKLPNLVWLNISENLLE-------WFDY 574
+ A F+N +L ++ L N +T + P NL L++ N + WF
Sbjct: 574 TLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWF-- 631
Query: 575 ALIPADLQWLDIHGNQISELGNYF 598
+ W++ I EL +++
Sbjct: 632 ------VNWINETHTNIPELSSHY 649
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 73/264 (27%), Positives = 134/264 (50%), Gaps = 19/264 (7%)
Query: 317 TQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLEN 376
T + VL+L++N+L + AA F+ +L L++ +N ++KL+ + + L L+VL+L++
Sbjct: 25 TNITVLNLTHNQLRR--LPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQH 82
Query: 377 NQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALK 436
N++ + TFA +NL L + +N +++I++N L L L +N L +
Sbjct: 83 NELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQV 142
Query: 437 NSTSLQDFHLNGNKL----TEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLR 492
+LQ+ L+ NK+ +E + N SLK L+L N I E + +++ +L GL
Sbjct: 143 QLENLQELLLSNNKIQALKSEELDIFAN-SSLKKLELSSNQIKEFSPGCFHAIGRLFGLF 201
Query: 493 LTENNISNISKGVFEKLSV------LTILNLASNKIQKVEAGTFDNN--SNLVAIRLDGN 544
L NN+ + + EKL + + L+L+++++ TF +NL + L N
Sbjct: 202 L--NNVQ-LGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYN 258
Query: 545 YLTDIGG-LFPKLPNLVWLNISEN 567
L +G F LP L + + N
Sbjct: 259 NLNVVGNDSFAWLPQLEYFFLEYN 282
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 125/480 (26%), Positives = 203/480 (42%), Gaps = 52/480 (10%)
Query: 222 NLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGXXXXXXXXXXXXXX 281
N+ VL+L++N LPA F+R S+L L + N ++ L
Sbjct: 26 NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL 85
Query: 282 XXIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSG 341
+ + F +L E++L +NSI + F LI LDLS+N L+ T
Sbjct: 86 SQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS--TKLGTQVQ 143
Query: 342 LHRLVVLNIAYNKMNKLDSS---IFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIM 398
L L L ++ NK+ L S IF + L+ L L +NQI+ F ++ L L +
Sbjct: 144 LENLQELLLSNNKIQALKSEELDIFAN-SSLKKLELSSNQIKEFSPGCFHAIGRLFGLFL 202
Query: 399 SNNKLKRIESNSLDSLTALSVLSLDNNELEYIE-ENALKNSTSLQDFHLNGNKLTEIPKV 457
+N +L SLT L L N + + N+ ++TS F G K T
Sbjct: 203 NNVQLG-------PSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFL--GLKWT----- 248
Query: 458 LRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNL 517
+L LDL N + + N S L QL L NNI ++ L + LNL
Sbjct: 249 -----NLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNL 303
Query: 518 ASN---------KIQKVEAGTFDNNSNLVAIRLDGNYLTDI-GGLFPKLPNLVWLNISEN 567
+ + K++ +F L + ++ N + I +F L NL +L++S +
Sbjct: 304 KRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNS 363
Query: 568 LL-------EWFDYALIPADLQWLDIHGNQISEL-GNYFEIESQLRLTYFDASSNKL-TE 618
E F +L + L L++ N+IS++ + F L + D N++ E
Sbjct: 364 FTSLRTLTNETF-VSLAHSPLHILNLTKNKISKIESDAFSWLGHLEV--LDLGLNEIGQE 420
Query: 619 LTGNAIPHSVENLF---LTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPL 675
LTG +EN+F L+ N ++ +F + P+L R+ L LKN++ + PL
Sbjct: 421 LTGQEW-RGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPL 479
Score = 50.8 bits (120), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 65/241 (26%), Positives = 107/241 (44%), Gaps = 17/241 (7%)
Query: 178 SIWTLPDAIFCPL--QSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSF-D 234
S+ TL + F L L LNLT+NK+S + + +FS +L VLDL N
Sbjct: 366 SLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLG------HLEVLDLGLNEIGQ 419
Query: 235 SLPAEGFSRLSRLQELYLQGNILTFLADH--ALDGXXXXXXXXXXXXXXXXIPPELFNQS 292
L + + L + E+YL N L + AL P F
Sbjct: 420 ELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPL 479
Query: 293 RDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAAT------FSGLHRLV 346
R+L + L NN+I + + L +L +LDL +N L W +A GL L
Sbjct: 480 RNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLH 539
Query: 347 VLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRI 406
+LN+ N +++ +FKDL+ L+++ L N + ++ + F + +L +L + N + +
Sbjct: 540 ILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSV 599
Query: 407 E 407
E
Sbjct: 600 E 600
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 65/141 (46%), Gaps = 7/141 (4%)
Query: 773 CTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQIL 832
CT H+V+ DCS Q+P +P + T L L N++ + + +F +L L
Sbjct: 2 CTVSHEVA------DCSHLKL-TQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSL 54
Query: 833 FLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISN 892
+ + + + + L L +L L N L+++ F NL EL+L N I I N
Sbjct: 55 DVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKN 114
Query: 893 RTFLSLTHLKVLQLDHNRITS 913
F+ +L L L HN ++S
Sbjct: 115 NPFVKQKNLITLDLSHNGLSS 135
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 150/641 (23%), Positives = 251/641 (39%), Gaps = 139/641 (21%)
Query: 192 SLSYLNLTQNKLSNVATFSFSNYD---TARCGIN---------------LRVLDLSNNSF 233
+++ LNLT N+L + +F+ Y + G N L+VL+L +N
Sbjct: 26 NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL 85
Query: 234 DSLPAEGFSRLSRLQELYL---------------QGNILTF------LADHALDGXXXXX 272
L + F+ + L EL+L Q N++T L+ L
Sbjct: 86 SQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLE 145
Query: 273 XXXXXXXXXXXIPP------ELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSN 326
I ++F S LK++ L +N I +PG F+ + +L L L+N
Sbjct: 146 NLQELLLSNNKIQALKSEELDIFANS-SLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNN 204
Query: 327 NEL----TE----EWVNAA-----------------TFSGLH--RLVVLNIAYNKMNKLD 359
+L TE E N + TF GL L +L+++YN +N +
Sbjct: 205 VQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVG 264
Query: 360 SSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNN---------KLKRIESNS 410
+ F L +L+ LE N I+ + ++ L N+ L + + L +I+ S
Sbjct: 265 NDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFS 324
Query: 411 LDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLG 470
L L L++++N++ I+ N +L+ L N T SL+TL
Sbjct: 325 FQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSL-SNSFT----------SLRTLT-N 372
Query: 471 DNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKI-QKVEAGT 529
+ ++ L+ + LH L LT+N IS I F L L +L+L N+I Q++
Sbjct: 373 ETFVS----LAHSPLHIL---NLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQE 425
Query: 530 FDNNSNLVAIRLDGN-YLTDIGGLFPKLPNLVWLNISENLLEWFDYALIP----ADLQWL 584
+ N+ I L N YL F +P+L L + L+ D + P +L L
Sbjct: 426 WRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTIL 485
Query: 585 DIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPHS----------VENLFLT 634
D+ N I+ + + +E +L D N L L +A P + L L
Sbjct: 486 DLSNNNIANINDDM-LEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLE 544
Query: 635 NNLISKVQPYTFFMKPNLTRVDLVGNRLKNI------NQTALRISPL------------- 675
+N ++ F L +DL N L + NQ +L+ L
Sbjct: 545 SNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVF 604
Query: 676 -PSHKNIPDFYIGENPFQCDC-NMQWLQSYSVNKERNKPNL 714
P+ +N+ + + NPF C C ++ W ++ N P L
Sbjct: 605 GPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPEL 645
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 824 IGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRL-TEIRGYEFERLENLRELYL 882
+ L IL L + + I + F+ L L +L L N + E+ G E+ LEN+ E+YL
Sbjct: 378 LAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYL 437
Query: 883 QYNKIIYISNRTFLSLTHLKVLQL 906
YNK + ++ +F + L+ L L
Sbjct: 438 SYNKYLQLTRNSFALVPSLQRLML 461
Score = 37.4 bits (85), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 52/113 (46%), Gaps = 3/113 (2%)
Query: 849 GLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDH 908
GL L IL L+ N EI F+ L L+ + L N + + F + LK L L
Sbjct: 534 GLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQK 593
Query: 909 NRITSFAVWHLSSQIQSIT---LTSNPWSCDCDFTEKFRDYLQRSRSSVHDIS 958
N ITS +++T + NP+ C C+ F +++ + +++ ++S
Sbjct: 594 NLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELS 646
Score = 35.4 bits (80), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 57/120 (47%), Gaps = 10/120 (8%)
Query: 804 DATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDN-- 861
+ T L L N + VVG+ SF +L+ FL ++++ + + + +GL + L L +
Sbjct: 249 NLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFT 308
Query: 862 -------RLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSF 914
L +I + F+ L+ L L ++ N I I + F L +LK L L N TS
Sbjct: 309 KQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLS-NSFTSL 367
Score = 30.8 bits (68), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 44/102 (43%), Gaps = 6/102 (5%)
Query: 815 IPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERL 874
+P + SF K L+ L + + + I + F GL L L L N T +R E
Sbjct: 317 LPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLS-NSFTSLRTLTNETF 375
Query: 875 ENLRE-----LYLQYNKIIYISNRTFLSLTHLKVLQLDHNRI 911
+L L L NKI I + F L HL+VL L N I
Sbjct: 376 VSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEI 417
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 97/186 (52%), Gaps = 12/186 (6%)
Query: 407 ESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKT 466
E NS+D + A +N++++ ++ ++ +++ L GNKL +I L+ L +L
Sbjct: 39 ELNSIDQIIA------NNSDIKSVQ--GIQYLPNVRYLALGGNKLHDI-SALKELTNLTY 89
Query: 467 LDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVE 526
L L N + + N + L L L L EN + ++ GVF+KL+ LT LNLA N++Q +
Sbjct: 90 LILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLP 149
Query: 527 AGTFDNNSNLVAIRLDGNYLTDIG-GLFPKLPNLVWLNISENLLEWFDYALIP--ADLQW 583
G FD +NL + L N L + G+F KL L L + +N L+ + LQ+
Sbjct: 150 KGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQY 209
Query: 584 LDIHGN 589
+ +H N
Sbjct: 210 IWLHDN 215
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 97/209 (46%), Gaps = 33/209 (15%)
Query: 198 LTQNKLSNVATFSFSNYDTARC-GI----NLRVLDLSNNSFDSLPAEGFSRLSRLQELYL 252
+TQN+L+++ +N D GI N+R L L N + A L+ L L L
Sbjct: 35 VTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISA--LKELTNLTYLIL 92
Query: 253 QGNILTFLADHALDGXXXXXXXXXXXXXXXXIPPELFNQSRDLKEVYLQNNSINVLAPGI 312
GN L L P +F++ +LKE+ L N + L G+
Sbjct: 93 TGNQLQSL------------------------PNGVFDKLTNLKELVLVENQLQSLPDGV 128
Query: 313 FNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVL 372
F+ LT L L+L++N+L + + F L L L+++YN++ L +F L +L+ L
Sbjct: 129 FDKLTNLTYLNLAHNQL--QSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDL 186
Query: 373 HLENNQIESIHRNTFASLSNLHTLIMSNN 401
L NQ++S+ F L++L + + +N
Sbjct: 187 RLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215
Score = 63.9 bits (154), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 74/153 (48%), Gaps = 2/153 (1%)
Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
T L L GN++ + + F L+ L L + ++++ + F+ L L L L N+L
Sbjct: 88 TYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQS 147
Query: 866 IRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSF--AVWHLSSQI 923
+ F++L NL EL L YN++ + F LT LK L+L N++ S V+ + +
Sbjct: 148 LPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSL 207
Query: 924 QSITLTSNPWSCDCDFTEKFRDYLQRSRSSVHD 956
Q I L NPW C C +++ + V +
Sbjct: 208 QYIWLHDNPWDCTCPGIRYLSEWINKHSGVVRN 240
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 68/132 (51%), Gaps = 1/132 (0%)
Query: 342 LHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNN 401
L L L + N++ L + +F L L+ L L NQ++S+ F L+NL L +++N
Sbjct: 84 LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHN 143
Query: 402 KLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPK-VLRN 460
+L+ + D LT L+ L L N+L+ + E T L+D L N+L +P V
Sbjct: 144 QLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDR 203
Query: 461 LHSLKTLDLGDN 472
L SL+ + L DN
Sbjct: 204 LTSLQYIWLHDN 215
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 6/90 (6%)
Query: 177 NSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSL 236
N + +LPD +F L +L+YLNL N+L ++ F NL LDLS N SL
Sbjct: 119 NQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKL------TNLTELDLSYNQLQSL 172
Query: 237 PAEGFSRLSRLQELYLQGNILTFLADHALD 266
P F +L++L++L L N L + D D
Sbjct: 173 PEGVFDKLTQLKDLRLYQNQLKSVPDGVFD 202
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 61/136 (44%), Gaps = 6/136 (4%)
Query: 177 NSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSL 236
N + +LP+ +F L +L L L +N+L ++ F NL L+L++N SL
Sbjct: 95 NQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKL------TNLTYLNLAHNQLQSL 148
Query: 237 PAEGFSRLSRLQELYLQGNILTFLADHALDGXXXXXXXXXXXXXXXXIPPELFNQSRDLK 296
P F +L+ L EL L N L L + D +P +F++ L+
Sbjct: 149 PKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQ 208
Query: 297 EVYLQNNSINVLAPGI 312
++L +N + PGI
Sbjct: 209 YIWLHDNPWDCTCPGI 224
Score = 37.4 bits (85), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 35/65 (53%)
Query: 850 LKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHN 909
L L L L N+L + F++L NL+EL L N++ + + F LT+L L L HN
Sbjct: 84 LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHN 143
Query: 910 RITSF 914
++ S
Sbjct: 144 QLQSL 148
Score = 30.4 bits (67), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 87/202 (43%), Gaps = 46/202 (22%)
Query: 556 LPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGN-YFE----------IESQL 604
LPN+ +L + N L +L +L + GNQ+ L N F+ +E+QL
Sbjct: 62 LPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQL 121
Query: 605 RLTYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKN 664
+ + D +KLT LT L L +N + + F NLT +DL N+L++
Sbjct: 122 Q-SLPDGVFDKLTNLT---------YLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS 171
Query: 665 INQTAL-RISPLP-------SHKNIPD-----------FYIGENPFQCDC-NMQWLQSYS 704
+ + +++ L K++PD ++ +NP+ C C +++L +
Sbjct: 172 LPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEW- 230
Query: 705 VNKE----RNKPNLVDLDTVTC 722
+NK RN V D+ C
Sbjct: 231 INKHSGVVRNSAGSVAPDSAKC 252
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 86/301 (28%), Positives = 151/301 (50%), Gaps = 21/301 (6%)
Query: 342 LHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNN 401
L+ L +N + N++ D + K+L +L + + NNQI I A+L+NL L + NN
Sbjct: 62 LNNLTQINFSNNQLT--DITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 402 KLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNL 461
++ I+ L +LT L+ L L +N + I AL TSLQ + N++T++ K L NL
Sbjct: 118 QITDIDP--LKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSFSSNQVTDL-KPLANL 172
Query: 462 HSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISK-GVFEKLSVLTILNLASN 520
+L+ LD+ N +++I+ L+ L L L T N IS+I+ G+ L L++ N
Sbjct: 173 TTLERLDISSNKVSDISVLA--KLTNLESLIATNNQISDITPLGILTNLDELSL-----N 225
Query: 521 KIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYALIPAD 580
Q + GT + +NL + L N ++++ L L L L + N +
Sbjct: 226 GNQLKDIGTLASLTNLTDLDLANNQISNLAPL-SGLTKLTELKLGANQISNISPLAGLTA 284
Query: 581 LQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPHSVENLFLTNNLISK 640
L L+++ NQ+ ++ I + LTY N +++++ + ++ LF +NN +S
Sbjct: 285 LTNLELNENQLEDIS---PISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFSNNKVSD 341
Query: 641 V 641
V
Sbjct: 342 V 342
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 96/205 (46%), Gaps = 17/205 (8%)
Query: 485 LHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGN 544
L+ L + + N +++I+ + L+ L + + +N+I + N +NL + L N
Sbjct: 62 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 545 YLTDIGGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQL 604
+TDI L L NL L +S N + LQ L NQ+++L + +
Sbjct: 118 QITDIDPL-KNLTNLNRLELSSNTISDISALSGLTSLQQLSFSSNQVTDLKPLANLTTLE 176
Query: 605 RLTYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKN 664
RL D SSNK+++++ A ++E+L TNN IS + P NL + L GN+LK+
Sbjct: 177 RL---DISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILT--NLDELSLNGNQLKD 231
Query: 665 INQTALRISPLPSHKNIPDFYIGEN 689
I L S N+ D + N
Sbjct: 232 -------IGTLASLTNLTDLDLANN 249
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 85/178 (47%), Gaps = 15/178 (8%)
Query: 294 DLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYN 353
+L E+ L N + + G LT L LDL+NN+++ N A SGL +L L + N
Sbjct: 218 NLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQIS----NLAPLSGLTKLTELKLGAN 271
Query: 354 KMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDS 413
+++ + S L L L L NQ+E I ++L NL L + N + I + S
Sbjct: 272 QISNI--SPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDIS--PVSS 325
Query: 414 LTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGD 471
LT L L NN++ + +L N T++ N+++++ L NL + L L D
Sbjct: 326 LTKLQRLFFSNNKVSDVS--SLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLND 380
Score = 33.5 bits (75), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 77/346 (22%), Positives = 139/346 (40%), Gaps = 41/346 (11%)
Query: 605 RLTYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKN 664
LT + S+N+LT++T + ++ + NN I+ + P NLT + L N++ +
Sbjct: 64 NLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLT--NLTGLTLFNNQITD 121
Query: 665 INQTALRISPLPSHKNIPDFYIGENPFQCDCNMQWLQS-----YSVNKERNKPNLVDLDT 719
I+ PL + N+ + N + L S +S N+ + L +L T
Sbjct: 122 ID-------PLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFSSNQVTDLKPLANLTT 174
Query: 720 VT-CKLLYNRANPAILLKEAHSNQFLCEYE---TNCAPLCHCCDFDACDCEMTCPNNCTC 775
+ + N+ + +L + + + L ++ PL + D N
Sbjct: 175 LERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSL------NGNQ 228
Query: 776 YHDVSWEA---NVIDCSTGGYDNQLPPRIPMDA----TELYLDGNRIPVVGSHSFIGRKK 828
D+ A N+ D +NQ+ P+ TEL L N+I + G
Sbjct: 229 LKDIGTLASLTNLTDLDLA--NNQISNLAPLSGLTKLTELKLGANQISNI--SPLAGLTA 284
Query: 829 LQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKII 888
L L LN + +E I + LK L L L N +++I L L+ L+ NK+
Sbjct: 285 LTNLELNENQLEDIS--PISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFSNNKVS 340
Query: 889 YISNRTFLSLTHLKVLQLDHNRITSFAVWHLSSQIQSITLTSNPWS 934
+S + +LT++ L HN+I+ ++I + L W+
Sbjct: 341 DVS--SLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQAWT 384
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 107/395 (27%), Positives = 173/395 (43%), Gaps = 31/395 (7%)
Query: 284 IPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLH 343
+PP F + L + NSI+ L P + +L L VL+L +NEL++ ++ TF
Sbjct: 40 LPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNELSQ--ISDQTFVFCT 97
Query: 344 RLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKL 403
L L++ N ++K+ S+ FK+ L L L +N + S T L NL L+++ NK+
Sbjct: 98 NLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSSTKLGTGVQLENLQELLLAKNKI 157
Query: 404 KRIESNSLDSL--TALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNL 461
+ S L+ L ++L L L +N L+ + L LN +L P + L
Sbjct: 158 LALRSEELEFLGNSSLRKLDLSSNPLKEFSPGCFQTIGKLFALLLNNAQLN--PHLTEKL 215
Query: 462 ------HSLKTLDLGDNLITEINNLSLNSLH--QLAGLRLTENNISNISKGVFEKLSVLT 513
S++ L L +N + + + + L L L L+ NN+ ++ G F L L
Sbjct: 216 CWELSNTSIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLR 275
Query: 514 ILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFD 573
L+L N IQ++ +F SNL + L + L NI + +W
Sbjct: 276 YLSLEYNNIQRLSPRSFYGLSNLRYLSLKRAFTKQSVSLASH------PNIDDFSFQWLK 329
Query: 574 YALIPADLQWLDIHGNQI-SELGNYFEIESQLRLTYFDASSNKLTELTGN---AIPHS-V 628
Y L++L++ N I S N F L+ + L LT ++ HS +
Sbjct: 330 Y------LEYLNMDDNNIPSTKSNTFTGLVSLKYLSLSKTFTSLQTLTNETFVSLAHSPL 383
Query: 629 ENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLK 663
L LT N ISK+ TF L +DL N ++
Sbjct: 384 LTLNLTKNHISKIANGTFSWLGQLRILDLGLNEIE 418
Score = 60.8 bits (146), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 73/261 (27%), Positives = 136/261 (52%), Gaps = 13/261 (4%)
Query: 317 TQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLEN 376
+ + VL+L++N+L + F+ +L +L+ +N ++KL+ + + L L+VL+L++
Sbjct: 25 SNITVLNLTHNQLRR--LPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQH 82
Query: 377 NQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALK 436
N++ I TF +NL L + +N + +I+SN + L L L +N L +
Sbjct: 83 NELSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSSTKLGTGV 142
Query: 437 NSTSLQDFHLNGNKL----TEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLR 492
+LQ+ L NK+ +E + L N SL+ LDL N + E + ++ +L L
Sbjct: 143 QLENLQELLLAKNKILALRSEELEFLGN-SSLRKLDLSSNPLKEFSPGCFQTIGKLFALL 201
Query: 493 LTENNIS-NISKGVFEKLSVLTI--LNLASNKIQKVEAGTFDNN--SNLVAIRLDGNYLT 547
L ++ ++++ + +LS +I L+LA+N++ TF +NL + L N L
Sbjct: 202 LNNAQLNPHLTEKLCWELSNTSIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLH 261
Query: 548 DIG-GLFPKLPNLVWLNISEN 567
D+G G F LP+L +L++ N
Sbjct: 262 DVGNGSFSYLPSLRYLSLEYN 282
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 126/495 (25%), Positives = 196/495 (39%), Gaps = 98/495 (19%)
Query: 177 NSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSL 236
N + + D F +L+ L+L N + + + F N NL LDLS+N S
Sbjct: 83 NELSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQK------NLIKLDLSHNGLSST 136
Query: 237 P-AEGFSRLSRLQELYLQGNILTFLADHALDGXXXXXXXXXXXXXXXXIPPEL-FNQSRD 294
G + + L + IL ++ EL F +
Sbjct: 137 KLGTGVQLENLQELLLAKNKILALRSE------------------------ELEFLGNSS 172
Query: 295 LKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNE----LTEE--W--------------- 333
L+++ L +N + +PG F + +L L L+N + LTE+ W
Sbjct: 173 LRKLDLSSNPLKEFSPGCFQTIGKLFALLLNNAQLNPHLTEKLCWELSNTSIQNLSLANN 232
Query: 334 ----VNAATFSGLH--RLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTF 387
+ +TFSGL L L+++YN ++ + + F L L+ L LE N I+ + +F
Sbjct: 233 QLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSF 292
Query: 388 ASLSNLHTLIMSNNKLKR---------IESNSLDSLTALSVLSLDNNELEYIEENALKNS 438
LSNL L + K+ I+ S L L L++D+N + + N
Sbjct: 293 YGLSNLRYLSLKRAFTKQSVSLASHPNIDDFSFQWLKYLEYLNMDDNNIPSTKSNTFTGL 352
Query: 439 TSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQ--LAGLRLTEN 496
SL+ L+ + SL+TL N + SL L L LT+N
Sbjct: 353 VSLKYLSLS-----------KTFTSLQTL----------TNETFVSLAHSPLLTLNLTKN 391
Query: 497 NISNISKGVFEKLSVLTILNLASNKI-QKVEAGTFDNNSNLVAIRLDGN-YLTDIGGLFP 554
+IS I+ G F L L IL+L N+I QK+ + N+ I L N YL F
Sbjct: 392 HISKIANGTFSWLGQLRILDLGLNEIEQKLSGQEWRGLRNIFEIYLSYNKYLQLSTSSFA 451
Query: 555 KLPNLVWLNISENLLEWFDYALIP----ADLQWLDIHGNQISELGNYFEIESQLRLTYFD 610
+P+L L + L+ D + P +L LD+ N I+ + N +E L D
Sbjct: 452 LVPSLQRLMLRRVALKNVDISPSPFRPLRNLTILDLSNNNIANI-NEDLLEGLENLEILD 510
Query: 611 ASSNKLTELTGNAIP 625
N L L A P
Sbjct: 511 FQHNNLARLWKRANP 525
Score = 57.0 bits (136), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 97/372 (26%), Positives = 150/372 (40%), Gaps = 61/372 (16%)
Query: 177 NSIWTLPDAIFCPLQ--SLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFD 234
N + ++ F L+ +L+ L+L+ N L +V SFS + LR L L N+
Sbjct: 232 NQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPS------LRYLSLEYNNIQ 285
Query: 235 SLPAEGFSRLSRLQELYLQGNIL---TFLADHALDGXXXXXXXXXXXXXXXXIPPELFNQ 291
L F LS L+ L L+ LA H I F
Sbjct: 286 RLSPRSFYGLSNLRYLSLKRAFTKQSVSLASHP------------------NIDDFSFQW 327
Query: 292 SRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHR--LVVLN 349
+ L+ + + +N+I F L L L LS + + + TF L L+ LN
Sbjct: 328 LKYLEYLNMDDNNIPSTKSNTFTGLVSLKYLSLSKTFTSLQTLTNETFVSLAHSPLLTLN 387
Query: 350 IAYNKMNKLDSSIFKDLYRLQVLHLENNQIE-SIHRNTFASLSNLHTLIMSNNKLKRIES 408
+ N ++K+ + F L +L++L L N+IE + + L N+ + +S NK ++ +
Sbjct: 388 LTKNHISKIANGTFSWLGQLRILDLGLNEIEQKLSGQEWRGLRNIFEIYLSYNKYLQLST 447
Query: 409 NSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLD 468
+S + +L L L ALKN + P R L +L LD
Sbjct: 448 SSFALVPSLQRLML--------RRVALKN-------------VDISPSPFRPLRNLTILD 486
Query: 469 LGDNLITEINNLSLNSLHQLAGLRLTENNISNISK--------GVFEKLSVLTILNLASN 520
L +N I IN L L L L NN++ + K + LS L ILNL SN
Sbjct: 487 LSNNNIANINEDLLEGLENLEILDFQHNNLARLWKRANPGGPVNFLKGLSHLHILNLESN 546
Query: 521 KIQKVEAGTFDN 532
+ ++ G F N
Sbjct: 547 GLDEIPVGVFKN 558
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 129/527 (24%), Positives = 206/527 (39%), Gaps = 100/527 (18%)
Query: 193 LSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYL 252
++ LNLT N+L + +F+ Y L +LD NS L E L L+ L L
Sbjct: 27 ITVLNLTHNQLRRLPPTNFTRYS------QLAILDAGFNSISKLEPELCQILPLLKVLNL 80
Query: 253 QGNILTFLADHALDGXXXXXXXXXXXXXXXXIPPELFNQSRDLKEVYLQNNSINVLAPGI 312
Q N L+ ++D F +L E+ L +NSI+ +
Sbjct: 81 QHNELSQISDQT------------------------FVFCTNLTELDLMSNSIHKIKSNP 116
Query: 313 FNVLTQLIVLDLSNNELTEEWVNAAT------------------------FSGLHRLVVL 348
F LI LDLS+N L+ + F G L L
Sbjct: 117 FKNQKNLIKLDLSHNGLSSTKLGTGVQLENLQELLLAKNKILALRSEELEFLGNSSLRKL 176
Query: 349 NIAYNKMNKLDSSIFKDLYRLQVLHLENNQIES-IHRNTFASLSN--LHTLIMSNNKLKR 405
+++ N + + F+ + +L L L N Q+ + LSN + L ++NN+L
Sbjct: 177 DLSSNPLKEFSPGCFQTIGKLFALLLNNAQLNPHLTEKLCWELSNTSIQNLSLANNQLLA 236
Query: 406 IESNSLDSL--TALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEI-PKVLRNLH 462
++ L T L+ L L N L + + SL+ L N + + P+ L
Sbjct: 237 TSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLS 296
Query: 463 SLKTLDLGDNLITE---------INNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLT 513
+L+ L L + I++ S L L L + +NNI + F L L
Sbjct: 297 NLRYLSLKRAFTKQSVSLASHPNIDDFSFQWLKYLEYLNMDDNNIPSTKSNTFTGLVSLK 356
Query: 514 ILNLAS--NKIQKVEAGTFDN--NSNLVAIRLDGNYLTDIG-GLFPKLPNLVWLNISENL 568
L+L+ +Q + TF + +S L+ + L N+++ I G F L L L++ N
Sbjct: 357 YLSLSKTFTSLQTLTNETFVSLAHSPLLTLNLTKNHISKIANGTFSWLGQLRILDLGLNE 416
Query: 569 LEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGN--AIPH 626
+E + G + L N FEI L+Y NK +L+ + A+
Sbjct: 417 IEQ-------------KLSGQEWRGLRNIFEI----YLSY-----NKYLQLSTSSFALVP 454
Query: 627 SVENLFLTNNLISKV--QPYTFFMKPNLTRVDLVGNRLKNINQTALR 671
S++ L L + V P F NLT +DL N + NIN+ L
Sbjct: 455 SLQRLMLRRVALKNVDISPSPFRPLRNLTILDLSNNNIANINEDLLE 501
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 57/128 (44%), Gaps = 29/128 (22%)
Query: 808 LYLDGNRIPVVGSHSFIGRKKLQILFLNSS----------------------------HV 839
L +D N IP S++F G L+ L L+ + H+
Sbjct: 334 LNMDDNNIPSTKSNTFTGLVSLKYLSLSKTFTSLQTLTNETFVSLAHSPLLTLNLTKNHI 393
Query: 840 ETIHNKTFNGLKELIILRLDDNRLTE-IRGYEFERLENLRELYLQYNKIIYISNRTFLSL 898
I N TF+ L +L IL L N + + + G E+ L N+ E+YL YNK + +S +F +
Sbjct: 394 SKIANGTFSWLGQLRILDLGLNEIEQKLSGQEWRGLRNIFEIYLSYNKYLQLSTSSFALV 453
Query: 899 THLKVLQL 906
L+ L L
Sbjct: 454 PSLQRLML 461
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 63/127 (49%), Gaps = 15/127 (11%)
Query: 824 IGRKKLQILFLNSSHVETIHNKTFNGLK--ELIILRLDDNRLTEIRGYEFERLENLRELY 881
+ +Q L L ++ + TF+GLK L L L N L ++ F L +LR L
Sbjct: 219 LSNTSIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLS 278
Query: 882 LQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSSQIQSITLTSNPWSCDCDFTE 941
L+YN I +S R+F L++L+ L L + QS++L S+P + D DF+
Sbjct: 279 LEYNNIQRLSPRSFYGLSNLRYLSLKR-----------AFTKQSVSLASHP-NID-DFSF 325
Query: 942 KFRDYLQ 948
++ YL+
Sbjct: 326 QWLKYLE 332
Score = 37.7 bits (86), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 53/120 (44%), Gaps = 10/120 (8%)
Query: 807 ELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVET--IHNKTFNGLKELIILRLDDNRLT 864
E+YL N+ + + SF LQ L L ++ I F L+ L IL L +N +
Sbjct: 434 EIYLSYNKYLQLSTSSFALVPSLQRLMLRRVALKNVDISPSPFRPLRNLTILDLSNNNIA 493
Query: 865 EIRGYEFERLENLRELYLQYNKIIYISNRT-------FL-SLTHLKVLQLDHNRITSFAV 916
I E LENL L Q+N + + R FL L+HL +L L+ N + V
Sbjct: 494 NINEDLLEGLENLEILDFQHNNLARLWKRANPGGPVNFLKGLSHLHILNLESNGLDEIPV 553
Score = 37.4 bits (85), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 54/121 (44%), Gaps = 13/121 (10%)
Query: 808 LYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVE---------TIHNKTFNGLKELIILRL 858
L L+ N I + SF G L+ L L + + I + +F LK L L +
Sbjct: 277 LSLEYNNIQRLSPRSFYGLSNLRYLSLKRAFTKQSVSLASHPNIDDFSFQWLKYLEYLNM 336
Query: 859 DDNRLTEIRGYEFERLENLRELYLQ--YNKIIYISNRTFLSLTH--LKVLQLDHNRITSF 914
DDN + + F L +L+ L L + + ++N TF+SL H L L L N I+
Sbjct: 337 DDNNIPSTKSNTFTGLVSLKYLSLSKTFTSLQTLTNETFVSLAHSPLLTLNLTKNHISKI 396
Query: 915 A 915
A
Sbjct: 397 A 397
Score = 36.6 bits (83), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 73/172 (42%), Gaps = 11/172 (6%)
Query: 798 PPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKT--------FNG 849
P R + T L L N I + G + L+IL +++ + + G
Sbjct: 475 PFRPLRNLTILDLSNNNIANINEDLLEGLENLEILDFQHNNLARLWKRANPGGPVNFLKG 534
Query: 850 LKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHN 909
L L IL L+ N L EI F+ L L+ + L N + + F T L+ L L N
Sbjct: 535 LSHLHILNLESNGLDEIPVGVFKNLFELKSINLGLNNLNKLEPFIFDDQTSLRSLNLQKN 594
Query: 910 RITSFAVWHLSSQIQ---SITLTSNPWSCDCDFTEKFRDYLQRSRSSVHDIS 958
ITS Q S+ + NP+ C C+ F +++ ++ +++ ++S
Sbjct: 595 LITSVEKDVFGPPFQNLNSLDMRFNPFDCTCESISWFVNWINQTHTNISELS 646
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 64.3 bits (155), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 87/301 (28%), Positives = 152/301 (50%), Gaps = 22/301 (7%)
Query: 342 LHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNN 401
L+ L +N + N++ D + K+L +L + + NNQI I A+L+NL L + NN
Sbjct: 62 LNNLTQINFSNNQLT--DITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 402 KLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNL 461
++ I+ L +LT L+ L L +N + I AL TSLQ + GN++T++ K L NL
Sbjct: 118 QITDIDP--LKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLNF-GNQVTDL-KPLANL 171
Query: 462 HSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISK-GVFEKLSVLTILNLASN 520
+L+ LD+ N +++I+ L+ L L L T N IS+I+ G+ L L++ N
Sbjct: 172 TTLERLDISSNKVSDISVLA--KLTNLESLIATNNQISDITPLGILTNLDELSL-----N 224
Query: 521 KIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYALIPAD 580
Q + GT + +NL + L N ++++ L L L L + N +
Sbjct: 225 GNQLKDIGTLASLTNLTDLDLANNQISNLAPL-SGLTKLTELKLGANQISNISPLAGLTA 283
Query: 581 LQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPHSVENLFLTNNLISK 640
L L+++ NQ+ ++ I + LTY N +++++ + ++ LF +NN +S
Sbjct: 284 LTNLELNENQLEDIS---PISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFSNNKVSD 340
Query: 641 V 641
V
Sbjct: 341 V 341
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 98/205 (47%), Gaps = 18/205 (8%)
Query: 485 LHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGN 544
L+ L + + N +++I+ + L+ L + + +N+I + N +NL + L N
Sbjct: 62 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 545 YLTDIGGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQL 604
+TDI L L NL L +S N + LQ L+ GNQ+++L + +
Sbjct: 118 QITDIDPL-KNLTNLNRLELSSNTISDISALSGLTSLQQLN-FGNQVTDLKPLANLTTLE 175
Query: 605 RLTYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKN 664
RL D SSNK+++++ A ++E+L TNN IS + P NL + L GN+LK+
Sbjct: 176 RL---DISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILT--NLDELSLNGNQLKD 230
Query: 665 INQTALRISPLPSHKNIPDFYIGEN 689
I L S N+ D + N
Sbjct: 231 -------IGTLASLTNLTDLDLANN 248
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 85/178 (47%), Gaps = 15/178 (8%)
Query: 294 DLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYN 353
+L E+ L N + + G LT L LDL+NN+++ N A SGL +L L + N
Sbjct: 217 NLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQIS----NLAPLSGLTKLTELKLGAN 270
Query: 354 KMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDS 413
+++ + S L L L L NQ+E I ++L NL L + N + I + S
Sbjct: 271 QISNI--SPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDIS--PVSS 324
Query: 414 LTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGD 471
LT L L NN++ + +L N T++ N+++++ L NL + L L D
Sbjct: 325 LTKLQRLFFSNNKVSDVS--SLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLND 379
Score = 32.3 bits (72), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 63/145 (43%), Gaps = 12/145 (8%)
Query: 794 DNQLPPRIPMDA----TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNG 849
+NQ+ P+ TEL L N+I + G L L LN + +E I +
Sbjct: 247 NNQISNLAPLSGLTKLTELKLGANQISNI--SPLAGLTALTNLELNENQLEDIS--PISN 302
Query: 850 LKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHN 909
LK L L L N +++I L L+ L+ NK+ +S + +LT++ L HN
Sbjct: 303 LKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFSNNKVSDVS--SLANLTNINWLSAGHN 358
Query: 910 RITSFAVWHLSSQIQSITLTSNPWS 934
+I+ ++I + L W+
Sbjct: 359 QISDLTPLANLTRITQLGLNDQAWT 383
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 63.5 bits (153), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 87/301 (28%), Positives = 150/301 (49%), Gaps = 22/301 (7%)
Query: 342 LHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNN 401
L+ L +N + N++ D + K+L +L + + NNQI I A+L+NL L + NN
Sbjct: 66 LNNLTQINFSNNQLT--DITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 121
Query: 402 KLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNL 461
++ I+ L +LT L+ L L +N + I AL TSLQ GN++T++ K L NL
Sbjct: 122 QITDIDP--LKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSF-GNQVTDL-KPLANL 175
Query: 462 HSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISK-GVFEKLSVLTILNLASN 520
+L+ LD+ N +++I+ L+ L L L T N IS+I+ G+ L L++ N
Sbjct: 176 TTLERLDISSNKVSDISVLA--KLTNLESLIATNNQISDITPLGILTNLDELSL-----N 228
Query: 521 KIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYALIPAD 580
Q + GT + +NL + L N ++++ L L L L + N +
Sbjct: 229 GNQLKDIGTLASLTNLTDLDLANNQISNLAPL-SGLTKLTELKLGANQISNISPLAGLTA 287
Query: 581 LQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPHSVENLFLTNNLISK 640
L L+++ NQ+ ++ I + LTY N +++++ + ++ LF NN +S
Sbjct: 288 LTNLELNENQLEDIS---PISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSD 344
Query: 641 V 641
V
Sbjct: 345 V 345
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 97/205 (47%), Gaps = 18/205 (8%)
Query: 485 LHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGN 544
L+ L + + N +++I+ + L+ L + + +N+I + N +NL + L N
Sbjct: 66 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 121
Query: 545 YLTDIGGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQL 604
+TDI L L NL L +S N + LQ L GNQ+++L + +
Sbjct: 122 QITDIDPL-KNLTNLNRLELSSNTISDISALSGLTSLQQLS-FGNQVTDLKPLANLTTLE 179
Query: 605 RLTYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKN 664
RL D SSNK+++++ A ++E+L TNN IS + P NL + L GN+LK+
Sbjct: 180 RL---DISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILT--NLDELSLNGNQLKD 234
Query: 665 INQTALRISPLPSHKNIPDFYIGEN 689
I L S N+ D + N
Sbjct: 235 -------IGTLASLTNLTDLDLANN 252
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 85/178 (47%), Gaps = 15/178 (8%)
Query: 294 DLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYN 353
+L E+ L N + + G LT L LDL+NN+++ N A SGL +L L + N
Sbjct: 221 NLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQIS----NLAPLSGLTKLTELKLGAN 274
Query: 354 KMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDS 413
+++ + S L L L L NQ+E I ++L NL L + N + I + S
Sbjct: 275 QISNI--SPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDIS--PVSS 328
Query: 414 LTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGD 471
LT L L NN++ + +L N T++ N+++++ L NL + L L D
Sbjct: 329 LTKLQRLFFANNKVSDVS--SLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLND 383
Score = 32.3 bits (72), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 63/145 (43%), Gaps = 12/145 (8%)
Query: 794 DNQLPPRIPMDA----TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNG 849
+NQ+ P+ TEL L N+I + G L L LN + +E I +
Sbjct: 251 NNQISNLAPLSGLTKLTELKLGANQISNI--SPLAGLTALTNLELNENQLEDIS--PISN 306
Query: 850 LKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHN 909
LK L L L N +++I L L+ L+ NK+ +S + +LT++ L HN
Sbjct: 307 LKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSDVS--SLANLTNINWLSAGHN 362
Query: 910 RITSFAVWHLSSQIQSITLTSNPWS 934
+I+ ++I + L W+
Sbjct: 363 QISDLTPLANLTRITQLGLNDQAWT 387
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 63.2 bits (152), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 100/343 (29%), Positives = 160/343 (46%), Gaps = 52/343 (15%)
Query: 294 DLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYN 353
+L + L NN I + P LT L L+LS+N +++ + SGL L LN + N
Sbjct: 108 NLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISD----ISALSGLTSLQQLNFSSN 161
Query: 354 KMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDS 413
++ L +L L+ L + +N++ I A L+NL +LI +NN++ I
Sbjct: 162 QVTDLKP--LANLTTLERLDISSNKVSDIS--VLAKLTNLESLIATNNQISDI------- 210
Query: 414 LTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNL 473
T L +L T+L + LNGN+L +I L +L +L LDL +N
Sbjct: 211 -TPLGIL------------------TNLDELSLNGNQLKDI-GTLASLTNLTDLDLANN- 249
Query: 474 ITEINNLS-LNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDN 532
+I+NL+ L+ L +L L+L N ISNIS L+ LT L L N+++ + N
Sbjct: 250 --QISNLAPLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISN 303
Query: 533 NSNLVAIRLDGNYLTDIGGL--FPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQ 590
NL + L N ++DI + KL L + N N + ++ WL NQ
Sbjct: 304 LKNLTYLTLYFNNISDISPVSSLTKLQRLFFYN---NKVSDVSSLANLTNINWLSAGHNQ 360
Query: 591 ISELGNYFEIESQLRLTYFDAS-SNKLTELTGN-AIPHSVENL 631
IS+L + +L D + +N N +IP++V+N+
Sbjct: 361 ISDLTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNV 403
Score = 61.2 bits (147), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 81/268 (30%), Positives = 133/268 (49%), Gaps = 22/268 (8%)
Query: 414 LTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNL 473
L L+ ++ NN+L I LKN T L D +N N++ +I L NL +L L L +N
Sbjct: 62 LNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQ 118
Query: 474 ITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNN 533
IT+I+ L +L L L L+ N IS+IS L+ L LN +SN++ ++ N
Sbjct: 119 ITDID--PLKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLNFSSNQVTDLKP--LANL 172
Query: 534 SNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISE 593
+ L + + N ++DI + KL NL L + N + I +L L ++GNQ+ +
Sbjct: 173 TTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD 231
Query: 594 LGNYFEIESQLRLTYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLT 653
+G + S LT D ++N+++ L + + L L N IS + P LT
Sbjct: 232 IG---TLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTA--LT 286
Query: 654 RVDLVGNRLKNINQTALRISPLPSHKNI 681
++L N+L++ ISP+ + KN+
Sbjct: 287 NLELNENQLED-------ISPISNLKNL 307
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 97/205 (47%), Gaps = 17/205 (8%)
Query: 485 LHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGN 544
L+ L + + N +++I+ + L+ L + + +N+I + N +NL + L N
Sbjct: 62 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 545 YLTDIGGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQL 604
+TDI L L NL L +S N + LQ L+ NQ+++L + +
Sbjct: 118 QITDIDPL-KNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLE 176
Query: 605 RLTYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKN 664
RL D SSNK+++++ A ++E+L TNN IS + P NL + L GN+LK+
Sbjct: 177 RL---DISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILT--NLDELSLNGNQLKD 231
Query: 665 INQTALRISPLPSHKNIPDFYIGEN 689
I L S N+ D + N
Sbjct: 232 -------IGTLASLTNLTDLDLANN 249
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 77/346 (22%), Positives = 139/346 (40%), Gaps = 41/346 (11%)
Query: 605 RLTYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKN 664
LT + S+N+LT++T + ++ + NN I+ + P NLT + L N++ +
Sbjct: 64 NLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLT--NLTGLTLFNNQITD 121
Query: 665 INQTALRISPLPSHKNIPDFYIGENPFQCDCNMQWLQS-----YSVNKERNKPNLVDLDT 719
I+ PL + N+ + N + L S +S N+ + L +L T
Sbjct: 122 ID-------PLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTT 174
Query: 720 VT-CKLLYNRANPAILLKEAHSNQFLCEYE---TNCAPLCHCCDFDACDCEMTCPNNCTC 775
+ + N+ + +L + + + L ++ PL + D N
Sbjct: 175 LERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSL------NGNQ 228
Query: 776 YHDVSWEA---NVIDCSTGGYDNQLPPRIPMDA----TELYLDGNRIPVVGSHSFIGRKK 828
D+ A N+ D +NQ+ P+ TEL L N+I + G
Sbjct: 229 LKDIGTLASLTNLTDLDLA--NNQISNLAPLSGLTKLTELKLGANQISNI--SPLAGLTA 284
Query: 829 LQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKII 888
L L LN + +E I + LK L L L N +++I L L+ L+ NK+
Sbjct: 285 LTNLELNENQLEDIS--PISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFYNNKVS 340
Query: 889 YISNRTFLSLTHLKVLQLDHNRITSFAVWHLSSQIQSITLTSNPWS 934
+S + +LT++ L HN+I+ ++I + L W+
Sbjct: 341 DVS--SLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQAWT 384
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 61.6 bits (148), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 99/343 (28%), Positives = 160/343 (46%), Gaps = 52/343 (15%)
Query: 294 DLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYN 353
+L + L NN I + P LT L L+LS+N +++ + SGL L L+ + N
Sbjct: 108 NLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISD----ISALSGLTSLQQLSFSSN 161
Query: 354 KMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDS 413
++ L +L L+ L + +N++ I A L+NL +LI +NN++ I
Sbjct: 162 QVTDLKP--LANLTTLERLDISSNKVSDIS--VLAKLTNLESLIATNNQISDI------- 210
Query: 414 LTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNL 473
T L +L T+L + LNGN+L +I L +L +L LDL +N
Sbjct: 211 -TPLGIL------------------TNLDELSLNGNQLKDI-GTLASLTNLTDLDLANN- 249
Query: 474 ITEINNLS-LNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDN 532
+I+NL+ L+ L +L L+L N ISNIS L+ LT L L N+++ + N
Sbjct: 250 --QISNLAPLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISN 303
Query: 533 NSNLVAIRLDGNYLTDIGGL--FPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQ 590
NL + L N ++DI + KL L + N N + ++ WL NQ
Sbjct: 304 LKNLTYLTLYFNNISDISPVSSLTKLQRLFFYN---NKVSDVSSLANLTNINWLSAGHNQ 360
Query: 591 ISELGNYFEIESQLRLTYFDAS-SNKLTELTGN-AIPHSVENL 631
IS+L + +L D + +N N +IP++V+N+
Sbjct: 361 ISDLTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNV 403
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 80/268 (29%), Positives = 133/268 (49%), Gaps = 22/268 (8%)
Query: 414 LTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNL 473
L L+ ++ NN+L I LKN T L D +N N++ +I L NL +L L L +N
Sbjct: 62 LNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQ 118
Query: 474 ITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNN 533
IT+I+ L +L L L L+ N IS+IS L+ L L+ +SN++ ++ N
Sbjct: 119 ITDID--PLKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSFSSNQVTDLKP--LANL 172
Query: 534 SNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISE 593
+ L + + N ++DI + KL NL L + N + I +L L ++GNQ+ +
Sbjct: 173 TTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD 231
Query: 594 LGNYFEIESQLRLTYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLT 653
+G + S LT D ++N+++ L + + L L N IS + P LT
Sbjct: 232 IG---TLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTA--LT 286
Query: 654 RVDLVGNRLKNINQTALRISPLPSHKNI 681
++L N+L++ ISP+ + KN+
Sbjct: 287 NLELNENQLED-------ISPISNLKNL 307
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 96/205 (46%), Gaps = 17/205 (8%)
Query: 485 LHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGN 544
L+ L + + N +++I+ + L+ L + + +N+I + N +NL + L N
Sbjct: 62 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 545 YLTDIGGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQL 604
+TDI L L NL L +S N + LQ L NQ+++L + +
Sbjct: 118 QITDIDPL-KNLTNLNRLELSSNTISDISALSGLTSLQQLSFSSNQVTDLKPLANLTTLE 176
Query: 605 RLTYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKN 664
RL D SSNK+++++ A ++E+L TNN IS + P NL + L GN+LK+
Sbjct: 177 RL---DISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILT--NLDELSLNGNQLKD 231
Query: 665 INQTALRISPLPSHKNIPDFYIGEN 689
I L S N+ D + N
Sbjct: 232 -------IGTLASLTNLTDLDLANN 249
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 77/346 (22%), Positives = 139/346 (40%), Gaps = 41/346 (11%)
Query: 605 RLTYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKN 664
LT + S+N+LT++T + ++ + NN I+ + P NLT + L N++ +
Sbjct: 64 NLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLT--NLTGLTLFNNQITD 121
Query: 665 INQTALRISPLPSHKNIPDFYIGENPFQCDCNMQWLQS-----YSVNKERNKPNLVDLDT 719
I+ PL + N+ + N + L S +S N+ + L +L T
Sbjct: 122 ID-------PLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFSSNQVTDLKPLANLTT 174
Query: 720 VT-CKLLYNRANPAILLKEAHSNQFLCEYE---TNCAPLCHCCDFDACDCEMTCPNNCTC 775
+ + N+ + +L + + + L ++ PL + D N
Sbjct: 175 LERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSL------NGNQ 228
Query: 776 YHDVSWEA---NVIDCSTGGYDNQLPPRIPMDA----TELYLDGNRIPVVGSHSFIGRKK 828
D+ A N+ D +NQ+ P+ TEL L N+I + G
Sbjct: 229 LKDIGTLASLTNLTDLDLA--NNQISNLAPLSGLTKLTELKLGANQISNI--SPLAGLTA 284
Query: 829 LQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKII 888
L L LN + +E I + LK L L L N +++I L L+ L+ NK+
Sbjct: 285 LTNLELNENQLEDIS--PISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFYNNKVS 340
Query: 889 YISNRTFLSLTHLKVLQLDHNRITSFAVWHLSSQIQSITLTSNPWS 934
+S + +LT++ L HN+I+ ++I + L W+
Sbjct: 341 DVS--SLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQAWT 384
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/239 (24%), Positives = 100/239 (41%), Gaps = 48/239 (20%)
Query: 767 MTCPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIP-----MDATE-------------- 807
++CP NC C +N++ CS N +P +P +D +
Sbjct: 10 VSCPANCLC------ASNILSCSKQQLPN-VPQSLPSYTALLDLSHNNLSRLRAEWTPTR 62
Query: 808 ------LYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDN 861
L L N + + S +F+ L+ L L+S+H+ T+ F+ L+ L +L L +N
Sbjct: 63 LTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNN 122
Query: 862 RLTEIRGYEFERLENLRELYLQYNKI-------IYISNRTFLSLTHLKVLQLDHNRITSF 914
+ + FE + L++LYL N+I I N+ L L +L L N++
Sbjct: 123 HIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNK----LPKLMLLDLSSNKLKKL 178
Query: 915 AVWHLSS----QIQSITLTSNPWSCDCDFTEKFRDYLQRSRSSVHDISQ-IRCMTGSEV 968
+ L + L +NP CDC + F + R SSV D + + CM ++
Sbjct: 179 PLTDLQKLPAWVKNGLYLHNNPLECDCKLYQLFSHWQYRQLSSVMDFQEDLYCMHSKKL 237
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 64/118 (54%), Gaps = 5/118 (4%)
Query: 316 LTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLE 375
LT L L LS+N L ++++ F + L L+++ N ++ LD +F DL L+VL L
Sbjct: 63 LTNLHSLLLSHNHLN--FISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLY 120
Query: 376 NNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSL---DSLTALSVLSLDNNELEYI 430
NN I + RN F ++ L L +S N++ R + + L L +L L +N+L+ +
Sbjct: 121 NNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKL 178
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 74/147 (50%), Gaps = 2/147 (1%)
Query: 346 VVLNIAYNKMNKLDSSIFKD-LYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLK 404
+L++++N +++L + L L L L +N + I F + NL L +S+N L
Sbjct: 42 ALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLH 101
Query: 405 RIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIP-KVLRNLHS 463
++ L AL VL L NN + ++ NA ++ LQ +L+ N+++ P +++++ +
Sbjct: 102 TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNK 161
Query: 464 LKTLDLGDNLITEINNLSLNSLHQLAG 490
L L L D ++ L L L +L
Sbjct: 162 LPKLMLLDLSSNKLKKLPLTDLQKLPA 188
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 69/140 (49%), Gaps = 7/140 (5%)
Query: 294 DLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYN 353
+L + L +N +N ++ F + L LDLS+N L ++ FS L L VL + N
Sbjct: 65 NLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHT--LDEFLFSDLQALEVLLLYNN 122
Query: 354 KMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFA---SLSNLHTLIMSNNKLKRIESNS 410
+ +D + F+D+ +LQ L+L NQI L L L +S+NKLK++
Sbjct: 123 HIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTD 182
Query: 411 LDSLTAL--SVLSLDNNELE 428
L L A + L L NN LE
Sbjct: 183 LQKLPAWVKNGLYLHNNPLE 202
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 92/200 (46%), Gaps = 31/200 (15%)
Query: 510 SVLTILNLASNKIQKVEAG-TFDNNSNLVAIRLDGNYLTDIGG-LFPKLPNLVWLNISEN 567
S +L+L+ N + ++ A T +NL ++ L N+L I F +PNL +L++S N
Sbjct: 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98
Query: 568 LLEWFDYALIPADLQWLDI---HGNQISELG-NYFEIESQLRLTYFDASSNKLTELTGNA 623
L D L +DLQ L++ + N I + N FE +QL+ Y S N+++
Sbjct: 99 HLHTLDEFLF-SDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYL--SQNQISRFP--- 152
Query: 624 IPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHKNIPD 683
VE + N L P L +DL N+LK + T L+ P +
Sbjct: 153 ----VELIKDGNKL------------PKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGL-- 194
Query: 684 FYIGENPFQCDCNMQWLQSY 703
Y+ NP +CDC + L S+
Sbjct: 195 -YLHNNPLECDCKLYQLFSH 213
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 76/163 (46%), Gaps = 10/163 (6%)
Query: 225 VLDLSNNSFDSLPAEGF-SRLSRLQELYLQGNILTFLADHALDGXXXXXXXXXXXXXXXX 283
+LDLS+N+ L AE +RL+ L L L N L F++ A
Sbjct: 43 LLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHT 102
Query: 284 IPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVN-AATFSGL 342
+ LF+ + L+ + L NN I V+ F + QL L LS N+++ V + L
Sbjct: 103 LDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKL 162
Query: 343 HRLVVLNIAYNKMNKLDSSIFKDLYRLQV-----LHLENNQIE 380
+L++L+++ NK+ KL DL +L L+L NN +E
Sbjct: 163 PKLMLLDLSSNKLKKLP---LTDLQKLPAWVKNGLYLHNNPLE 202
Score = 36.2 bits (82), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 72/176 (40%), Gaps = 44/176 (25%)
Query: 396 LIMSNNKLKRIESN-SLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEI 454
L +S+N L R+ + + LT L L L +N L +I A +
Sbjct: 44 LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAF----------------VPV 87
Query: 455 PKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTI 514
P +L+ LDL N + ++ + L L L L N+I + + FE ++ L
Sbjct: 88 P-------NLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQK 140
Query: 515 LNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLE 570
L L+ N+I + V + DGN KLP L+ L++S N L+
Sbjct: 141 LYLSQNQISRFP----------VELIKDGN----------KLPKLMLLDLSSNKLK 176
Score = 31.6 bits (70), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 49/113 (43%), Gaps = 27/113 (23%)
Query: 222 NLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGXXXXXXXXXXXXXX 281
NLR LDLS+N +L FS L L+ L L N + + +A
Sbjct: 89 NLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNA----------------- 131
Query: 282 XXIPPELFNQSRDLKEVYLQNNSINVLAPGIF---NVLTQLIVLDLSNNELTE 331
F L+++YL N I+ + N L +L++LDLS+N+L +
Sbjct: 132 -------FEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 82/162 (50%), Gaps = 4/162 (2%)
Query: 346 VVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKR 405
+L+++ N + + RL L+L+ ++ + + +L L TL +S+N+L+
Sbjct: 34 TILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVD--GTLPVLGTLDLSHNQLQS 91
Query: 406 IESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPK-VLRNLHSL 464
+ +L AL+VL + N L + AL+ LQ+ +L GN+L +P +L L
Sbjct: 92 LPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 465 KTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVF 506
+ L L +N +TE+ LN L L L L EN++ I KG F
Sbjct: 151 EKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 78/181 (43%), Gaps = 8/181 (4%)
Query: 284 IPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLH 343
+PP+L +D ++L N + + T+L L+L ELT+ V+ L
Sbjct: 25 LPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGT----LP 77
Query: 344 RLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKL 403
L L++++N++ L + + L L VL + N++ S+ L L L + N+L
Sbjct: 78 VLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Query: 404 KRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHS 463
K + L L LSL NN+L + L +L L N L IPK H
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHL 196
Query: 464 L 464
L
Sbjct: 197 L 197
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 83/181 (45%), Gaps = 9/181 (4%)
Query: 373 HLENN----QIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELE 428
HLE N Q+ ++ + + LH +S N L +L T L+ L+LD EL
Sbjct: 12 HLEVNCDKRQLTALPPDLPKDTTILH---LSENLLYTFSLATLMPYTRLTQLNLDRCELT 68
Query: 429 YIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQL 488
++ + L L+ N+L +P + + L +L LD+ N +T + +L L +L
Sbjct: 69 KLQVDG--TLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL 126
Query: 489 AGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTD 548
L L N + + G+ L L+LA+N++ ++ AG + NL + L N L
Sbjct: 127 QELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYT 186
Query: 549 I 549
I
Sbjct: 187 I 187
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 65/155 (41%), Gaps = 27/155 (17%)
Query: 813 NRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFE 872
NR+ + + G +LQ L+L + ++T+ +L L L +N+LTE+
Sbjct: 110 NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLN 169
Query: 873 RLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSSQIQSITLTSNP 932
LENL L LQ N + I F S + FA H NP
Sbjct: 170 GLENLDTLLLQENSLYTIPKGFFGS------------HLLPFAFLH-----------GNP 206
Query: 933 WSCDCDFTEKFRDYLQRSRSSVHDISQ---IRCMT 964
W C+C+ FR +LQ + +V+ Q ++ MT
Sbjct: 207 WLCNCEIL-YFRRWLQDNAENVYVWKQGVDVKAMT 240
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 38/92 (41%)
Query: 223 LRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGXXXXXXXXXXXXXXX 282
L VLD+S N SLP L LQELYL+GN L L L
Sbjct: 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT 161
Query: 283 XIPPELFNQSRDLKEVYLQNNSINVLAPGIFN 314
+P L N +L + LQ NS+ + G F
Sbjct: 162 ELPAGLLNGLENLDTLLLQENSLYTIPKGFFG 193
Score = 32.0 bits (71), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 83/218 (38%), Gaps = 49/218 (22%)
Query: 513 TILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWF 572
TIL+L+ N + T + L + LD LT + + LP L L++S N
Sbjct: 34 TILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQ-VDGTLPVLGTLDLSHN----- 87
Query: 573 DYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPH--SVEN 630
LQ L + G + L T D S N+LT L A+ ++
Sbjct: 88 -------QLQSLPLLGQTLPAL------------TVLDVSFNRLTSLPLGALRGLGELQE 128
Query: 631 LFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALR----ISPLPSHKN----IP 682
L+L N + + P P L ++ L N+L + L + L +N IP
Sbjct: 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIP 188
Query: 683 DFYIGE----------NPFQCDCNM----QWLQSYSVN 706
+ G NP+ C+C + +WLQ + N
Sbjct: 189 KGFFGSHLLPFAFLHGNPWLCNCEILYFRRWLQDNAEN 226
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 67/251 (26%), Positives = 114/251 (45%), Gaps = 34/251 (13%)
Query: 348 LNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIE 407
L++++N + L S F LQVL L +I++I + SLS+L TLI++ N ++ +
Sbjct: 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92
Query: 408 SNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLT--EIPKVLRNLHSLK 465
+ L++L L L +E + + +L++ ++ N + ++P+ NL +L+
Sbjct: 93 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 152
Query: 466 TLDLGDNLITEINNLSLNSLHQLAGLRLTENN----ISNISKGVFE--KLSVLTILN--- 516
LDL N I I L LHQ+ L L+ + ++ I G F+ +L LT+ N
Sbjct: 153 HLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFD 212
Query: 517 -----------LASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNIS 565
LA ++ ++ G F N NL + D + L L L I
Sbjct: 213 SLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLE--KFDKS----------ALEGLCNLTIE 260
Query: 566 ENLLEWFDYAL 576
E L + DY L
Sbjct: 261 EFRLAYLDYYL 271
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 68/145 (46%), Gaps = 9/145 (6%)
Query: 823 FIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE-IRGYEFERLENLRELY 881
F+ + L L ++ +H N FNGL L +L++ N E F L NL L
Sbjct: 417 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 476
Query: 882 LQYNKIIYISNRTFLSLTHLKVLQLDHNRITSF--AVWHLSSQIQSITLTSNPWSCDCDF 939
L ++ +S F SL+ L+VL + N++ S ++ + +Q I L +NPW C C
Sbjct: 477 LSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536
Query: 940 TEKFRDYLQR--SRSSVHDISQIRC 962
DYL R +++S + +C
Sbjct: 537 I----DYLSRWLNKNSQKEQGSAKC 557
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 61/236 (25%), Positives = 99/236 (41%), Gaps = 53/236 (22%)
Query: 190 LQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQE 249
L SL +L+L++N LS S S++ T +L+ LDLS N ++ + F L +L+
Sbjct: 346 LPSLEFLDLSRNGLSFKGCCSQSDFGTT----SLKYLDLSFNGVITM-SSNFLGLEQLEH 400
Query: 250 LYLQGNILTFLADHALDGXXXXXXXXXXXXXXXXIPPELFNQSRDLKEVYLQNNSINVLA 309
L Q + L +++ ++ F R+L + + + V
Sbjct: 401 LDFQHSNLKQMSEFSV-----------------------FLSLRNLIYLDISHTHTRVAF 437
Query: 310 PGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRL 369
GIFN L+ L VL ++ N E ++ IF +L L
Sbjct: 438 NGIFNGLSSLEVLKMAGNSFQENFL-------------------------PDIFTELRNL 472
Query: 370 QVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNN 425
L L Q+E + F SLS+L L M++N+LK + D LT+L + L N
Sbjct: 473 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN 528
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 70/135 (51%), Gaps = 2/135 (1%)
Query: 316 LTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLE 375
L QL LD ++ L ++ + F L L+ L+I++ + IF L L+VL +
Sbjct: 395 LEQLEHLDFQHSNL-KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA 453
Query: 376 NNQI-ESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENA 434
N E+ + F L NL L +S +L+++ + +SL++L VL++ +N+L+ + +
Sbjct: 454 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGI 513
Query: 435 LKNSTSLQDFHLNGN 449
TSLQ L+ N
Sbjct: 514 FDRLTSLQKIWLHTN 528
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 119/505 (23%), Positives = 203/505 (40%), Gaps = 109/505 (21%)
Query: 179 IWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPA 238
+ +PD + P S L+L+ N L ++ ++SF ++ L+VLDLS ++
Sbjct: 19 FYKIPDNL--PF-STKNLDLSFNPLRHLGSYSFFSFP------ELQVLDLSRCEIQTIED 69
Query: 239 EGFSRLSRLQELYLQGNILTFLADHALDGXXXXXXXXXXXXXXXXIPPELFNQSRDLKEV 298
+ LS L L L GN + LA A G + + LKE+
Sbjct: 70 GAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL 129
Query: 299 YLQNNSINVLA-PGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRL----VVLNIAYN 353
+ +N I P F+ LT L LDLS+N++ + + LH++ + L+++ N
Sbjct: 130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI--QSIYCTDLRVLHQMPLLNLSLDLSLN 187
Query: 354 KMNKLDSSIFKDLYRLQVLHLENN-QIESIHRNTFASLSNL--HTLIMS----NNKLKRI 406
MN + FK++ RL L L NN ++ + L+ L H L++ L++
Sbjct: 188 PMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKF 246
Query: 407 ESNSLDSLTALSVLSLDNNELEYIEE------NALKNSTS----------LQDFHLNGN- 449
+ ++L+ L L++ L+Y + N L N +S ++DF N
Sbjct: 247 DKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGW 306
Query: 450 --------KLTEIPKVLRNLHSLKTLDL----GDNLITEIN------------------- 478
K + P + L SLK L G N +E++
Sbjct: 307 QHLELVNCKFGQFPTL--KLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGC 364
Query: 479 --------------NLSLN----------SLHQLAGLRLTENNISNISK-GVFEKLSVLT 513
+LS N L QL L +N+ +S+ VF L L
Sbjct: 365 CSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 424
Query: 514 ILNLASNKIQKVEAGTFDNNSNLVAIRLDG-----NYLTDIGGLFPKLPNLVWLNISENL 568
L+++ + G F+ S+L +++ G N+L DI F +L NL +L++S+
Sbjct: 425 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI---FTELRNLTFLDLSQCQ 481
Query: 569 LEWFDYALIP--ADLQWLDIHGNQI 591
LE + LQ L++ NQ+
Sbjct: 482 LEQLSPTAFNSLSSLQVLNMASNQL 506
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 56/121 (46%)
Query: 796 QLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELII 855
++P +P L L N + +GS+SF +LQ+L L+ ++TI + + L L
Sbjct: 21 KIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLST 80
Query: 856 LRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFA 915
L L N + + F L +L++L + + N L LK L + HN I SF
Sbjct: 81 LILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK 140
Query: 916 V 916
+
Sbjct: 141 L 141
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 57/230 (24%), Positives = 100/230 (43%), Gaps = 48/230 (20%)
Query: 316 LTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLE 375
L L LDLS N L+ + + + G L L++++N + + SS F L +L+ L +
Sbjct: 346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQ 404
Query: 376 NNQIESIHR-NTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENA 434
++ ++ + + F SL NL L +S+ + + + L++L VL + N + EN
Sbjct: 405 HSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ---ENF 461
Query: 435 LKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLT 494
L + + TE+ NL+ L L+
Sbjct: 462 LPD-----------------------------------IFTELRNLTF--------LDLS 478
Query: 495 ENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGN 544
+ + +S F LS L +LN+ASN+++ V G FD ++L I L N
Sbjct: 479 QCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN 528
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 48/74 (64%), Gaps = 7/74 (9%)
Query: 182 LPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGF 241
LPD IF L++L++L+L+Q +L ++ +F++ + L+VL++++N S+P F
Sbjct: 462 LPD-IFTELRNLTFLDLSQCQLEQLSPTAFNSLSS------LQVLNMASNQLKSVPDGIF 514
Query: 242 SRLSRLQELYLQGN 255
RL+ LQ+++L N
Sbjct: 515 DRLTSLQKIWLHTN 528
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 82/162 (50%), Gaps = 4/162 (2%)
Query: 346 VVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKR 405
+L+++ N + + RL L+L+ ++ + + +L L TL +S+N+L+
Sbjct: 34 TILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVD--GTLPVLGTLDLSHNQLQS 91
Query: 406 IESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPK-VLRNLHSL 464
+ +L AL+VL + N L + AL+ LQ+ +L GN+L +P +L L
Sbjct: 92 LPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 465 KTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVF 506
+ L L +N +TE+ LN L L L L EN++ I KG F
Sbjct: 151 EKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
Score = 49.7 bits (117), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 78/181 (43%), Gaps = 8/181 (4%)
Query: 284 IPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLH 343
+PP+L +D ++L N + + T+L L+L ELT+ V+ L
Sbjct: 25 LPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGT----LP 77
Query: 344 RLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKL 403
L L++++N++ L + + L L VL + N++ S+ L L L + N+L
Sbjct: 78 VLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Query: 404 KRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHS 463
K + L L LSL NN+L + L +L L N L IPK H
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHL 196
Query: 464 L 464
L
Sbjct: 197 L 197
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 83/181 (45%), Gaps = 9/181 (4%)
Query: 373 HLENN----QIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELE 428
HLE N Q+ ++ + + LH +S N L +L T L+ L+LD EL
Sbjct: 12 HLEVNCDKRQLTALPPDLPKDTTILH---LSENLLYTFSLATLMPYTRLTQLNLDRCELT 68
Query: 429 YIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQL 488
++ + L L+ N+L +P + + L +L LD+ N +T + +L L +L
Sbjct: 69 KLQVDG--TLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL 126
Query: 489 AGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTD 548
L L N + + G+ L L+LA+N++ ++ AG + NL + L N L
Sbjct: 127 QELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYT 186
Query: 549 I 549
I
Sbjct: 187 I 187
Score = 47.0 bits (110), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 65/155 (41%), Gaps = 27/155 (17%)
Query: 813 NRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFE 872
NR+ + + G +LQ L+L + ++T+ +L L L +N+LTE+
Sbjct: 110 NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLN 169
Query: 873 RLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSSQIQSITLTSNP 932
LENL L LQ N + I F S + FA H NP
Sbjct: 170 GLENLDTLLLQENSLYTIPKGFFGS------------HLLPFAFLH-----------GNP 206
Query: 933 WSCDCDFTEKFRDYLQRSRSSVHDISQ---IRCMT 964
W C+C+ FR +LQ + +V+ Q ++ MT
Sbjct: 207 WLCNCEIL-YFRRWLQDNAENVYVWKQGVDVKAMT 240
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 61/156 (39%), Gaps = 34/156 (21%)
Query: 190 LQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQE 249
L L L+L+ N+L ++ + L VLD+S N SLP L LQE
Sbjct: 76 LPVLGTLDLSHNQLQSLPLL-------GQTLPALTVLDVSFNRLTSLPLGALRGLGELQE 128
Query: 250 LYLQGNILTFLADHALDGXXXXXXXXXXXXXXXXIPPELFNQSRDLKEVYLQNNSINVLA 309
LYL+GN L L PP L + L+++ L NN + L
Sbjct: 129 LYLKGNELKTL------------------------PPGLLTPTPKLEKLSLANNQLTELP 164
Query: 310 PGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRL 345
G+ N L L L L N L + F G H L
Sbjct: 165 AGLLNGLENLDTLLLQENSL---YTIPKGFFGSHLL 197
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 82/206 (39%), Gaps = 49/206 (23%)
Query: 549 IGGLFPKLP-NLVWLNISENLLEWFDYA-LIP-----------ADLQWLDIHGNQISELG 595
+ L P LP + L++SENLL F A L+P +L L + G + LG
Sbjct: 22 LTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGT-LPVLG 80
Query: 596 NYFEIESQLR-----------LTYFDASSNKLTELTGNAIPH--SVENLFLTNNLISKVQ 642
+QL+ LT D S N+LT L A+ ++ L+L N + +
Sbjct: 81 TLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 643 PYTFFMKPNLTRVDLVGNRLKNINQTALR----ISPLPSHKN----IPDFYIGE------ 688
P P L ++ L N+L + L + L +N IP + G
Sbjct: 141 PGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFA 200
Query: 689 ----NPFQCDCNM----QWLQSYSVN 706
NP+ C+C + +WLQ + N
Sbjct: 201 FLHGNPWLCNCEILYFRRWLQDNAEN 226
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 100/343 (29%), Positives = 159/343 (46%), Gaps = 53/343 (15%)
Query: 294 DLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYN 353
+L + L NN I + P LT L L+LS+N +++ + SGL L LN N
Sbjct: 108 NLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISD----ISALSGLTSLQQLNFG-N 160
Query: 354 KMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDS 413
++ L +L L+ L + +N++ I A L+NL +LI +NN++ I
Sbjct: 161 QVTDLKP--LANLTTLERLDISSNKVSDIS--VLAKLTNLESLIATNNQISDI------- 209
Query: 414 LTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNL 473
T L +L T+L + LNGN+L +I L +L +L LDL +N
Sbjct: 210 -TPLGIL------------------TNLDELSLNGNQLKDI-GTLASLTNLTDLDLANN- 248
Query: 474 ITEINNLS-LNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDN 532
+I+NL+ L+ L +L L+L N ISNIS L+ LT L L N+++ + N
Sbjct: 249 --QISNLAPLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISN 302
Query: 533 NSNLVAIRLDGNYLTDIGGL--FPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQ 590
NL + L N ++DI + KL L + N N + ++ WL NQ
Sbjct: 303 LKNLTYLTLYFNNISDISPVSSLTKLQRLFFYN---NKVSDVSSLANLTNINWLSAGHNQ 359
Query: 591 ISELGNYFEIESQLRLTYFDAS-SNKLTELTGN-AIPHSVENL 631
IS+L + +L D + +N N +IP++V+N+
Sbjct: 360 ISDLTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNV 402
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 80/268 (29%), Positives = 129/268 (48%), Gaps = 23/268 (8%)
Query: 414 LTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNL 473
L L+ ++ NN+L I LKN T L D +N N++ +I L NL +L L L +N
Sbjct: 62 LNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQ 118
Query: 474 ITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNN 533
IT+I+ L +L L L L+ N IS+IS L+ L LN + Q + N
Sbjct: 119 ITDID--PLKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLNFGN---QVTDLKPLANL 171
Query: 534 SNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISE 593
+ L + + N ++DI + KL NL L + N + I +L L ++GNQ+ +
Sbjct: 172 TTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD 230
Query: 594 LGNYFEIESQLRLTYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLT 653
+G + S LT D ++N+++ L + + L L N IS + P LT
Sbjct: 231 IG---TLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTA--LT 285
Query: 654 RVDLVGNRLKNINQTALRISPLPSHKNI 681
++L N+L++ ISP+ + KN+
Sbjct: 286 NLELNENQLED-------ISPISNLKNL 306
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 98/205 (47%), Gaps = 18/205 (8%)
Query: 485 LHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGN 544
L+ L + + N +++I+ + L+ L + + +N+I + N +NL + L N
Sbjct: 62 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 545 YLTDIGGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQL 604
+TDI L L NL L +S N + LQ L+ GNQ+++L + +
Sbjct: 118 QITDIDPL-KNLTNLNRLELSSNTISDISALSGLTSLQQLN-FGNQVTDLKPLANLTTLE 175
Query: 605 RLTYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKN 664
RL D SSNK+++++ A ++E+L TNN IS + P NL + L GN+LK+
Sbjct: 176 RL---DISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILT--NLDELSLNGNQLKD 230
Query: 665 INQTALRISPLPSHKNIPDFYIGEN 689
I L S N+ D + N
Sbjct: 231 -------IGTLASLTNLTDLDLANN 248
Score = 31.6 bits (70), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 63/145 (43%), Gaps = 12/145 (8%)
Query: 794 DNQLPPRIPMDA----TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNG 849
+NQ+ P+ TEL L N+I + G L L LN + +E I +
Sbjct: 247 NNQISNLAPLSGLTKLTELKLGANQISNI--SPLAGLTALTNLELNENQLEDIS--PISN 302
Query: 850 LKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHN 909
LK L L L N +++I L L+ L+ NK+ +S + +LT++ L HN
Sbjct: 303 LKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFYNNKVSDVS--SLANLTNINWLSAGHN 358
Query: 910 RITSFAVWHLSSQIQSITLTSNPWS 934
+I+ ++I + L W+
Sbjct: 359 QISDLTPLANLTRITQLGLNDQAWT 383
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 82/162 (50%), Gaps = 4/162 (2%)
Query: 346 VVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKR 405
+L+++ N + + RL L+L+ ++ + + +L L TL +S+N+L+
Sbjct: 34 TILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVD--GTLPVLGTLDLSHNQLQS 91
Query: 406 IESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPK-VLRNLHSL 464
+ +L AL+VL + N L + AL+ LQ+ +L GN+L +P +L L
Sbjct: 92 LPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 465 KTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVF 506
+ L L +N +TE+ LN L L L L EN++ I KG F
Sbjct: 151 EKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 78/181 (43%), Gaps = 8/181 (4%)
Query: 284 IPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLH 343
+PP+L +D ++L N + + T+L L+L ELT+ V+ L
Sbjct: 25 LPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGT----LP 77
Query: 344 RLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKL 403
L L++++N++ L + + L L VL + N++ S+ L L L + N+L
Sbjct: 78 VLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Query: 404 KRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHS 463
K + L L LSL NN+L + L +L L N L IPK H
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHL 196
Query: 464 L 464
L
Sbjct: 197 L 197
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 83/181 (45%), Gaps = 9/181 (4%)
Query: 373 HLENN----QIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELE 428
HLE N Q+ ++ + + LH +S N L +L T L+ L+LD EL
Sbjct: 12 HLEVNCDKRQLTALPPDLPKDTTILH---LSENLLYTFSLATLMPYTRLTQLNLDRCELT 68
Query: 429 YIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQL 488
++ + L L+ N+L +P + + L +L LD+ N +T + +L L +L
Sbjct: 69 KLQVDG--TLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL 126
Query: 489 AGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTD 548
L L N + + G+ L L+LA+N++ ++ AG + NL + L N L
Sbjct: 127 QELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYT 186
Query: 549 I 549
I
Sbjct: 187 I 187
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 60/143 (41%), Gaps = 24/143 (16%)
Query: 813 NRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFE 872
NR+ + + G +LQ L+L + ++T+ +L L L +N+LTE+
Sbjct: 110 NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLN 169
Query: 873 RLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSSQIQSITLTSNP 932
LENL L LQ N + I F S + FA H NP
Sbjct: 170 GLENLDTLLLQENSLYTIPKGFFGS------------HLLPFAFLH-----------GNP 206
Query: 933 WSCDCDFTEKFRDYLQRSRSSVH 955
W C+C+ FR +LQ + +V+
Sbjct: 207 WLCNCEIL-YFRRWLQDNAENVY 228
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 61/156 (39%), Gaps = 34/156 (21%)
Query: 190 LQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQE 249
L L L+L+ N+L ++ + L VLD+S N SLP L LQE
Sbjct: 76 LPVLGTLDLSHNQLQSLPLL-------GQTLPALTVLDVSFNRLTSLPLGALRGLGELQE 128
Query: 250 LYLQGNILTFLADHALDGXXXXXXXXXXXXXXXXIPPELFNQSRDLKEVYLQNNSINVLA 309
LYL+GN L L PP L + L+++ L NN + L
Sbjct: 129 LYLKGNELKTL------------------------PPGLLTPTPKLEKLSLANNQLTELP 164
Query: 310 PGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRL 345
G+ N L L L L N L + F G H L
Sbjct: 165 AGLLNGLENLDTLLLQENSL---YTIPKGFFGSHLL 197
Score = 32.0 bits (71), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 82/206 (39%), Gaps = 49/206 (23%)
Query: 549 IGGLFPKLP-NLVWLNISENLLEWFDYA-LIP-----------ADLQWLDIHGNQISELG 595
+ L P LP + L++SENLL F A L+P +L L + G + LG
Sbjct: 22 LTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGT-LPVLG 80
Query: 596 NYFEIESQLR-----------LTYFDASSNKLTELTGNAIPH--SVENLFLTNNLISKVQ 642
+QL+ LT D S N+LT L A+ ++ L+L N + +
Sbjct: 81 TLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 643 PYTFFMKPNLTRVDLVGNRLKNINQTALR----ISPLPSHKN----IPDFYIGE------ 688
P P L ++ L N+L + L + L +N IP + G
Sbjct: 141 PGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFA 200
Query: 689 ----NPFQCDCNM----QWLQSYSVN 706
NP+ C+C + +WLQ + N
Sbjct: 201 FLHGNPWLCNCEILYFRRWLQDNAEN 226
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 107/447 (23%), Positives = 176/447 (39%), Gaps = 77/447 (17%)
Query: 181 TLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEG 240
TLP++ C L + N L + +FS INL LDL+ + +
Sbjct: 30 TLPNSTEC-------LEFSFNVLPTIQNTTFSRL------INLTFLDLTRCQIYWIHEDT 76
Query: 241 FSRLSRLQELYLQGNILTFLADHALDGXXXXXXXXXXXXXXXXIPPELFNQSRDLKEVYL 300
F RL L L N L F+A+ AL G I + + L+ +YL
Sbjct: 77 FQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYL 136
Query: 301 QNNSINVLA-PGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYN------ 353
+N I+ + P F +L VLD NN + +++ S L + L++ N
Sbjct: 137 GSNHISSIKLPKGFPT-EKLKVLDFQNNAI--HYLSKEDMSSLQQATNLSLNLNGNDIAG 193
Query: 354 -KMNKLDSSIFKDL---------------------------------------------- 366
+ DS++F+ L
Sbjct: 194 IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCE 253
Query: 367 YRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNE 426
++ ++L+ + +I NTF S L L ++ L + S L L+ L L L N+
Sbjct: 254 MSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPS-GLVGLSTLKKLVLSANK 312
Query: 427 LEYIEENALKNSTSLQDFHLNGN--KLTEIPKVLRNLHSLKTLDLGDNLI--TEINNLSL 482
E + + + N SL + GN +L L NL +L+ LDL + I ++ NL L
Sbjct: 313 FENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQL 372
Query: 483 NSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLD 542
+L L L L+ N ++ F++ L +L+LA +++ +A + N +L+ +
Sbjct: 373 RNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNL 432
Query: 543 GNYLTDIGG--LFPKLPNLVWLNISEN 567
+ L DI LF LP L LN+ N
Sbjct: 433 SHSLLDISSEQLFDGLPALQHLNLQGN 459
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 72/266 (27%), Positives = 115/266 (43%), Gaps = 29/266 (10%)
Query: 348 LNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIE 407
L ++N + + ++ F L L L L QI IH +TF S L TL+++ N L +
Sbjct: 38 LEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMA 97
Query: 408 SNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEI--PKVLRNLHSLK 465
+L AL L + I+ L N +L+ +L N ++ I PK LK
Sbjct: 98 ETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPT-EKLK 156
Query: 466 TLDLGDNLITEINNLSLNSLHQLA--GLRLTENNISNISKGVFEKLSVLTILN------- 516
LD +N I ++ ++SL Q L L N+I+ I G F+ +V LN
Sbjct: 157 VLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQNL 215
Query: 517 ------LASNKIQKVEAGTFD--NNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENL 568
L ++ IQ + GTF+ ++ ++ +G L ++ L + NIS N
Sbjct: 216 LVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEG--LCEMSVESINLQKHYFFNISSNT 273
Query: 569 LEWFDYALIPADLQWLDIHGNQISEL 594
F + LQ LD+ +SEL
Sbjct: 274 FHCF------SGLQELDLTATHLSEL 293
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 95/379 (25%), Positives = 161/379 (42%), Gaps = 25/379 (6%)
Query: 304 SINVLAPGI----FNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLD 359
S NVL P I F+ L L LDL+ ++ W++ TF HRL L + N + +
Sbjct: 41 SFNVL-PTIQNTTFSRLINLTFLDLTRCQIY--WIHEDTFQSQHRLDTLVLTANPLIFMA 97
Query: 360 SSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSV 419
+ L+ L I SI + L +L + +N + I+ L V
Sbjct: 98 ETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKV 157
Query: 420 LSLDNNELEYIEE---NALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLG--DNLI 474
L NN + Y+ + ++L+ +T+L +LNGN + I + ++L+ G NL+
Sbjct: 158 LDFQNNAIHYLSKEDMSSLQQATNL-SLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLL 216
Query: 475 TEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTI--LNLASNKIQKVEAGTFDN 532
L +++ L + + +IS VFE L +++ +NL + + + TF
Sbjct: 217 VIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHC 276
Query: 533 NSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLE---WFDYALIPADLQWLDIHGN 589
S L + L +L+++ L L L +S N E + P+ L L I GN
Sbjct: 277 FSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPS-LTHLSIKGN 335
Query: 590 QIS-ELGNY----FEIESQLRLTYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPY 644
ELG E +L L++ D ++ L + H +++L L+ N ++
Sbjct: 336 TKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSH-LQSLNLSYNEPLSLKTE 394
Query: 645 TFFMKPNLTRVDLVGNRLK 663
F P L +DL RLK
Sbjct: 395 AFKECPQLELLDLAFTRLK 413
Score = 38.5 bits (88), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 82/166 (49%), Gaps = 10/166 (6%)
Query: 313 FNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVL 372
F QL +LDL+ L + + F LH L VLN++++ ++ +F L LQ L
Sbjct: 396 FKECPQLELLDLAFTRLKVKDAQSP-FQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHL 454
Query: 373 HLENNQIE--SIHR-NTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEY 429
+L+ N +I + N+ +L L L++S L I+ ++ SL ++ + L +N L
Sbjct: 455 NLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTS 514
Query: 430 IEENALKNSTSLQDFHLN--GNKLTEI-PKVLRNLHSLKTLDLGDN 472
AL + L+ +LN N ++ I P +L L +T++L N
Sbjct: 515 SSIEALSH---LKGIYLNLASNHISIILPSLLPILSQQRTINLRQN 557
Score = 37.7 bits (86), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 68/168 (40%), Gaps = 32/168 (19%)
Query: 814 RIPVVGSHS-FIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE---IRGY 869
R+ V + S F L++L L+ S ++ + F+GL L L L N + +
Sbjct: 411 RLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTN 470
Query: 870 EFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLS--------- 920
+ L L L L + + I F SL + + L HNR+TS ++ LS
Sbjct: 471 SLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNL 530
Query: 921 ----------------SQIQSITLTSNPWSCDCD---FTEKFRDYLQR 949
SQ ++I L NP C C F E +++ +Q+
Sbjct: 531 ASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIYFLEWYKENMQK 578
Score = 30.8 bits (68), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 56/161 (34%), Gaps = 24/161 (14%)
Query: 795 NQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELI 854
N++P +P L N +P + + +F L L L + IH TF L
Sbjct: 25 NEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLD 84
Query: 855 ILRLDDNRL---------------------TEIRGYEFERLEN---LRELYLQYNKIIYI 890
L L N L T I +F L N L LYL N I I
Sbjct: 85 TLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSI 144
Query: 891 SNRTFLSLTHLKVLQLDHNRITSFAVWHLSSQIQSITLTSN 931
LKVL +N I + +SS Q+ L+ N
Sbjct: 145 KLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLN 185
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 82/162 (50%), Gaps = 4/162 (2%)
Query: 346 VVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKR 405
+L+++ N + + RL L+L+ ++ + + +L L TL +S+N+L+
Sbjct: 34 TILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVD--GTLPVLGTLDLSHNQLQS 91
Query: 406 IESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPK-VLRNLHSL 464
+ +L AL+VL + N L + AL+ LQ+ +L GN+L +P +L L
Sbjct: 92 LPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 465 KTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVF 506
+ L L +N +TE+ LN L L L L EN++ I KG F
Sbjct: 151 EKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 78/181 (43%), Gaps = 8/181 (4%)
Query: 284 IPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLH 343
+PP+L +D ++L N + + T+L L+L ELT+ V+ L
Sbjct: 25 LPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGT----LP 77
Query: 344 RLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKL 403
L L++++N++ L + + L L VL + N++ S+ L L L + N+L
Sbjct: 78 VLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Query: 404 KRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHS 463
K + L L LSL NN+L + L +L L N L IPK H
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHL 196
Query: 464 L 464
L
Sbjct: 197 L 197
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 83/181 (45%), Gaps = 9/181 (4%)
Query: 373 HLENN----QIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELE 428
HLE N Q+ ++ + + LH +S N L +L T L+ L+LD EL
Sbjct: 12 HLEVNCDKRQLTALPPDLPKDTTILH---LSENLLYTFSLATLMPYTRLTQLNLDRCELT 68
Query: 429 YIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQL 488
++ + L L+ N+L +P + + L +L LD+ N +T + +L L +L
Sbjct: 69 KLQVDG--TLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL 126
Query: 489 AGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTD 548
L L N + + G+ L L+LA+N++ ++ AG + NL + L N L
Sbjct: 127 QELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYT 186
Query: 549 I 549
I
Sbjct: 187 I 187
Score = 47.4 bits (111), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 65/155 (41%), Gaps = 27/155 (17%)
Query: 813 NRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFE 872
NR+ + + G +LQ L+L + ++T+ +L L L +N+LTE+
Sbjct: 110 NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLN 169
Query: 873 RLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSSQIQSITLTSNP 932
LENL L LQ N + I F S + FA H NP
Sbjct: 170 GLENLDTLLLQENSLYTIPKGFFGS------------HLLPFAFLH-----------GNP 206
Query: 933 WSCDCDFTEKFRDYLQRSRSSVHDISQ---IRCMT 964
W C+C+ FR +LQ + +V+ Q ++ MT
Sbjct: 207 WLCNCEIL-YFRRWLQDNAENVYVWKQGVDVKAMT 240
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 38/92 (41%)
Query: 223 LRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGXXXXXXXXXXXXXXX 282
L VLD+S N SLP L LQELYL+GN L L L
Sbjct: 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT 161
Query: 283 XIPPELFNQSRDLKEVYLQNNSINVLAPGIFN 314
+P L N +L + LQ NS+ + G F
Sbjct: 162 ELPAGLLNGLENLDTLLLQENSLYTIPKGFFG 193
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 83/218 (38%), Gaps = 49/218 (22%)
Query: 513 TILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWF 572
TIL+L+ N + T + L + LD LT + + LP L L++S N
Sbjct: 34 TILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQ-VDGTLPVLGTLDLSHN----- 87
Query: 573 DYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPH--SVEN 630
LQ L + G + L T D S N+LT L A+ ++
Sbjct: 88 -------QLQSLPLLGQTLPAL------------TVLDVSFNRLTSLPLGALRGLGELQE 128
Query: 631 LFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALR----ISPLPSHKN----IP 682
L+L N + + P P L ++ L N+L + L + L +N IP
Sbjct: 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIP 188
Query: 683 DFYIGE----------NPFQCDCNM----QWLQSYSVN 706
+ G NP+ C+C + +WLQ + N
Sbjct: 189 KGFFGSHLLPFAFLHGNPWLCNCEILYFRRWLQDNAEN 226
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 67/251 (26%), Positives = 114/251 (45%), Gaps = 34/251 (13%)
Query: 348 LNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIE 407
L++++N + L S F LQVL L +I++I + SLS+L TLI++ N ++ +
Sbjct: 57 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 116
Query: 408 SNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLT--EIPKVLRNLHSLK 465
+ L++L L L +E + + +L++ ++ N + ++P+ NL +L+
Sbjct: 117 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 176
Query: 466 TLDLGDNLITEINNLSLNSLHQLAGLRLTENN----ISNISKGVFE--KLSVLTILN--- 516
LDL N I I L LHQ+ L L+ + ++ I G F+ +L LT+ N
Sbjct: 177 HLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFD 236
Query: 517 -----------LASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNIS 565
LA ++ ++ G F N NL + D + L L L I
Sbjct: 237 SLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLE--KFDKS----------ALEGLCNLTIE 284
Query: 566 ENLLEWFDYAL 576
E L + DY L
Sbjct: 285 EFRLAYLDYYL 295
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 136/579 (23%), Positives = 244/579 (42%), Gaps = 84/579 (14%)
Query: 179 IWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPA 238
+ +PD + P S L+L+ N L ++ ++SF ++ L+VLDLS ++
Sbjct: 43 FYKIPDNL--PF-STKNLDLSFNPLRHLGSYSFFSFP------ELQVLDLSRCEIQTIED 93
Query: 239 EGFSRLSRLQELYLQGNILTFLADHALDGXXXXXXXXXXXXXXXXIPPELFNQSRDLKEV 298
+ LS L L L GN + LA A G + + LKE+
Sbjct: 94 GAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL 153
Query: 299 YLQNNSINVLA-PGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRL----VVLNIAYN 353
+ +N I P F+ LT L LDLS+N++ + + LH++ + L+++ N
Sbjct: 154 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI--QSIYCTDLRVLHQMPLLNLSLDLSLN 211
Query: 354 KMNKLDSSIFKDLYRLQVLHLENN-QIESIHRNTFASLSNL--HTLIMS----NNKLKRI 406
MN + FK++ RL L L NN ++ + L+ L H L++ L++
Sbjct: 212 PMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKF 270
Query: 407 ESNSLDSLTALSVLSLDNNELEYIEE------NALKNSTS----------LQDFHLNGN- 449
+ ++L+ L L++ L+Y + N L N +S ++DF N
Sbjct: 271 DKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGW 330
Query: 450 --------KLTEIPKVLRNLHSLKTLDL----GDNLITEINNLSLNSLHQLAGLRLTENN 497
K + P + L SLK L G N +E++ L L L L+ N
Sbjct: 331 QHLELVNCKFGQFPTL--KLKSLKRLTFTSNKGGNAFSEVD------LPSLEFLDLSRNG 382
Query: 498 IS---NISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIG--GL 552
+S S+ F +S L L+L+ N + + + F L + + L + +
Sbjct: 383 LSFKGCCSQSDFGTIS-LKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSV 440
Query: 553 FPKLPNLVWLNISENLLEWFDYALIP--ADLQWLDIHGNQISELGNYF-EIESQLR-LTY 608
F L NL++L+IS + + L+ L + GN E N+ +I ++LR LT+
Sbjct: 441 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE--NFLPDIFTELRNLTF 498
Query: 609 FDASSNKLTELTGNAIP--HSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNIN 666
D S +L +L+ A S++ L +++N + + + +L +D N +
Sbjct: 499 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSK 558
Query: 667 QTALRISPLPSHKNIPDFYIGENPFQCDCN----MQWLQ 701
+ L+ P ++ + +N F C C +QW++
Sbjct: 559 KQELQHFP----SSLAFLNLTQNDFACTCEHQSFLQWIK 593
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 56/121 (46%)
Query: 796 QLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELII 855
++P +P L L N + +GS+SF +LQ+L L+ ++TI + + L L
Sbjct: 45 KIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLST 104
Query: 856 LRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFA 915
L L N + + F L +L++L + + N L LK L + HN I SF
Sbjct: 105 LILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK 164
Query: 916 V 916
+
Sbjct: 165 L 165
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 71/173 (41%), Gaps = 29/173 (16%)
Query: 823 FIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE-IRGYEFERLENLRELY 881
F+ + L L ++ +H N FNGL L +L++ N E F L NL L
Sbjct: 441 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 500
Query: 882 LQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVW------------------------ 917
L ++ +S F SL+ L+VL + HN S +
Sbjct: 501 LSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ 560
Query: 918 ---HLSSQIQSITLTSNPWSCDCDFTEKFRDYLQRSRSSVHDISQIRCMTGSE 967
H S + + LT N ++C C+ + F +++ R + ++ ++ C T S+
Sbjct: 561 ELQHFPSSLAFLNLTQNDFACTCE-HQSFLQWIKDQRQLLVEVERMECATPSD 612
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 82/162 (50%), Gaps = 4/162 (2%)
Query: 346 VVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKR 405
+L+++ N + + RL L+L+ ++ + + +L L TL +S+N+L+
Sbjct: 34 TILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVD--GTLPVLGTLDLSHNQLQS 91
Query: 406 IESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPK-VLRNLHSL 464
+ +L AL+VL + N L + AL+ LQ+ +L GN+L +P +L L
Sbjct: 92 LPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 465 KTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVF 506
+ L L +N +TE+ LN L L L L EN++ I KG F
Sbjct: 151 EKLSLANNDLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 78/181 (43%), Gaps = 8/181 (4%)
Query: 284 IPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLH 343
+PP+L +D ++L N + + T+L L+L ELT+ V+ L
Sbjct: 25 LPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGT----LP 77
Query: 344 RLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKL 403
L L++++N++ L + + L L VL + N++ S+ L L L + N+L
Sbjct: 78 VLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Query: 404 KRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHS 463
K + L L LSL NN+L + L +L L N L IPK H
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHL 196
Query: 464 L 464
L
Sbjct: 197 L 197
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 71/154 (46%), Gaps = 2/154 (1%)
Query: 396 LIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIP 455
L +S N L +L T L+ L+LD EL ++ + L L+ N+L +P
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDG--TLPVLGTLDLSHNQLQSLP 93
Query: 456 KVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTIL 515
+ + L +L LD+ N +T + +L L +L L L N + + G+ L L
Sbjct: 94 LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL 153
Query: 516 NLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDI 549
+LA+N + ++ AG + NL + L N L I
Sbjct: 154 SLANNDLTELPAGLLNGLENLDTLLLQENSLYTI 187
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 64/155 (41%), Gaps = 27/155 (17%)
Query: 813 NRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFE 872
NR+ + + G +LQ L+L + ++T+ +L L L +N LTE+
Sbjct: 110 NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLTELPAGLLN 169
Query: 873 RLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSSQIQSITLTSNP 932
LENL L LQ N + I F S + FA H NP
Sbjct: 170 GLENLDTLLLQENSLYTIPKGFFGS------------HLLPFAFLH-----------GNP 206
Query: 933 WSCDCDFTEKFRDYLQRSRSSVHDISQ---IRCMT 964
W C+C+ FR +LQ + +V+ Q ++ MT
Sbjct: 207 WLCNCEIL-YFRRWLQDNAENVYVWKQGVDVKAMT 240
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 61/156 (39%), Gaps = 34/156 (21%)
Query: 190 LQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQE 249
L L L+L+ N+L ++ + L VLD+S N SLP L LQE
Sbjct: 76 LPVLGTLDLSHNQLQSLPLL-------GQTLPALTVLDVSFNRLTSLPLGALRGLGELQE 128
Query: 250 LYLQGNILTFLADHALDGXXXXXXXXXXXXXXXXIPPELFNQSRDLKEVYLQNNSINVLA 309
LYL+GN L L PP L + L+++ L NN + L
Sbjct: 129 LYLKGNELKTL------------------------PPGLLTPTPKLEKLSLANNDLTELP 164
Query: 310 PGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRL 345
G+ N L L L L N L + F G H L
Sbjct: 165 AGLLNGLENLDTLLLQENSL---YTIPKGFFGSHLL 197
Score = 33.1 bits (74), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 82/207 (39%), Gaps = 49/207 (23%)
Query: 548 DIGGLFPKLP-NLVWLNISENLLEWFDYA-LIP-----------ADLQWLDIHGNQISEL 594
D+ L P LP + L++SENLL F A L+P +L L + G + L
Sbjct: 21 DLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGT-LPVL 79
Query: 595 GNYFEIESQLR-----------LTYFDASSNKLTELTGNAIPH--SVENLFLTNNLISKV 641
G +QL+ LT D S N+LT L A+ ++ L+L N + +
Sbjct: 80 GTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL 139
Query: 642 QPYTFFMKPNLTRVDLVGNRLKNINQTAL----RISPLPSHKN----IPDFYIGE----- 688
P P L ++ L N L + L + L +N IP + G
Sbjct: 140 PPGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPF 199
Query: 689 -----NPFQCDCNM----QWLQSYSVN 706
NP+ C+C + +WLQ + N
Sbjct: 200 AFLHGNPWLCNCEILYFRRWLQDNAEN 226
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 82/162 (50%), Gaps = 4/162 (2%)
Query: 346 VVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKR 405
+L+++ N + + RL L+L+ ++ + + +L L TL +S+N+L+
Sbjct: 34 TILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLSHNQLQS 91
Query: 406 IESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPK-VLRNLHSL 464
+ +L AL+VL + N L + AL+ LQ+ +L GN+L +P +L L
Sbjct: 92 LPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 465 KTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVF 506
+ L L +N +TE+ LN L L L L EN++ I KG F
Sbjct: 151 EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 77/181 (42%), Gaps = 8/181 (4%)
Query: 284 IPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLH 343
+PP+L +D ++L N + + T+L L+L ELT+ V+ L
Sbjct: 25 LPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGT----LP 77
Query: 344 RLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKL 403
L L++++N++ L + + L L VL + N++ S+ L L L + N+L
Sbjct: 78 VLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Query: 404 KRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHS 463
K + L L LSL NN L + L +L L N L IPK H
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHL 196
Query: 464 L 464
L
Sbjct: 197 L 197
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 64/155 (41%), Gaps = 27/155 (17%)
Query: 813 NRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFE 872
NR+ + + G +LQ L+L + ++T+ +L L L +N LTE+
Sbjct: 110 NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLN 169
Query: 873 RLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSSQIQSITLTSNP 932
LENL L LQ N + I F S + FA H NP
Sbjct: 170 GLENLDTLLLQENSLYTIPKGFFGS------------HLLPFAFLH-----------GNP 206
Query: 933 WSCDCDFTEKFRDYLQRSRSSVHDISQ---IRCMT 964
W C+C+ FR +LQ + +V+ Q ++ MT
Sbjct: 207 WLCNCEIL-YFRRWLQDNAENVYVWKQGVDVKAMT 240
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 71/154 (46%), Gaps = 2/154 (1%)
Query: 396 LIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIP 455
L +S N L +L T L+ L+LD EL ++ + L L+ N+L +P
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDG--TLPVLGTLDLSHNQLQSLP 93
Query: 456 KVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTIL 515
+ + L +L LD+ N +T + +L L +L L L N + + G+ L L
Sbjct: 94 LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL 153
Query: 516 NLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDI 549
+LA+N + ++ AG + NL + L N L I
Sbjct: 154 SLANNNLTELPAGLLNGLENLDTLLLQENSLYTI 187
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 62/156 (39%), Gaps = 34/156 (21%)
Query: 190 LQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQE 249
L L L+L+ N+L ++ + L VLD+S N SLP L LQE
Sbjct: 76 LPVLGTLDLSHNQLQSLPLL-------GQTLPALTVLDVSFNRLTSLPLGALRGLGELQE 128
Query: 250 LYLQGNILTFLADHALDGXXXXXXXXXXXXXXXXIPPELFNQSRDLKEVYLQNNSINVLA 309
LYL+GN L L PP L + L+++ L NN++ L
Sbjct: 129 LYLKGNELKTL------------------------PPGLLTPTPKLEKLSLANNNLTELP 164
Query: 310 PGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRL 345
G+ N L L L L N L + F G H L
Sbjct: 165 AGLLNGLENLDTLLLQENSL---YTIPKGFFGSHLL 197
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 83/207 (40%), Gaps = 49/207 (23%)
Query: 548 DIGGLFPKLP-NLVWLNISENLLEWFDYA-LIP-----------ADLQWLDIHGNQISEL 594
++ L P LP + L++SENLL F A L+P A+L L + G + L
Sbjct: 21 NLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGT-LPVL 79
Query: 595 GNYFEIESQLR-----------LTYFDASSNKLTELTGNAIPH--SVENLFLTNNLISKV 641
G +QL+ LT D S N+LT L A+ ++ L+L N + +
Sbjct: 80 GTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL 139
Query: 642 QPYTFFMKPNLTRVDLVGNRLKNINQTALR----ISPLPSHKN----IPDFYIGE----- 688
P P L ++ L N L + L + L +N IP + G
Sbjct: 140 PPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPF 199
Query: 689 -----NPFQCDCNM----QWLQSYSVN 706
NP+ C+C + +WLQ + N
Sbjct: 200 AFLHGNPWLCNCEILYFRRWLQDNAEN 226
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 67/251 (26%), Positives = 114/251 (45%), Gaps = 34/251 (13%)
Query: 348 LNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIE 407
L++++N + L S F LQVL L +I++I + SLS+L TLI++ N ++ +
Sbjct: 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92
Query: 408 SNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLT--EIPKVLRNLHSLK 465
+ L++L L L +E + + +L++ ++ N + ++P+ NL +L+
Sbjct: 93 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 152
Query: 466 TLDLGDNLITEINNLSLNSLHQLAGLRLTENN----ISNISKGVFE--KLSVLTILN--- 516
LDL N I I L LHQ+ L L+ + ++ I G F+ +L LT+ N
Sbjct: 153 HLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFD 212
Query: 517 -----------LASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNIS 565
LA ++ ++ G F N NL + D + L L L I
Sbjct: 213 SLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLE--KFDKS----------ALEGLCNLTIE 260
Query: 566 ENLLEWFDYAL 576
E L + DY L
Sbjct: 261 EFRLAYLDYYL 271
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 56/121 (46%)
Query: 796 QLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELII 855
++P +P L L N + +GS+SF +LQ+L L+ ++TI + + L L
Sbjct: 21 KIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLST 80
Query: 856 LRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFA 915
L L N + + F L +L++L + + N L LK L + HN I SF
Sbjct: 81 LILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK 140
Query: 916 V 916
+
Sbjct: 141 L 141
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 71/173 (41%), Gaps = 29/173 (16%)
Query: 823 FIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE-IRGYEFERLENLRELY 881
F+ + L L ++ +H N FNGL L +L++ N E F L NL L
Sbjct: 417 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 476
Query: 882 LQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVW------------------------ 917
L ++ +S F SL+ L+VL + HN S +
Sbjct: 477 LSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ 536
Query: 918 ---HLSSQIQSITLTSNPWSCDCDFTEKFRDYLQRSRSSVHDISQIRCMTGSE 967
H S + + LT N ++C C+ + F +++ R + ++ ++ C T S+
Sbjct: 537 ELQHFPSSLAFLNLTQNDFACTCE-HQSFLQWIKDQRQLLVEVERMECATPSD 588
Score = 47.0 bits (110), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 136/579 (23%), Positives = 243/579 (41%), Gaps = 84/579 (14%)
Query: 179 IWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPA 238
+ +PD + P S L+L+ N L ++ ++SF ++ L+VLDLS ++
Sbjct: 19 FYKIPDNL--PF-STKNLDLSFNPLRHLGSYSFFSFP------ELQVLDLSRCEIQTIED 69
Query: 239 EGFSRLSRLQELYLQGNILTFLADHALDGXXXXXXXXXXXXXXXXIPPELFNQSRDLKEV 298
+ LS L L L GN + LA A G + + LKE+
Sbjct: 70 GAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL 129
Query: 299 YLQNNSINVLA-PGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRL----VVLNIAYN 353
+ +N I P F+ LT L LDLS+N++ + + LH++ + L+++ N
Sbjct: 130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI--QSIYCTDLRVLHQMPLLNLSLDLSLN 187
Query: 354 KMNKLDSSIFKDLYRLQVLHLENN-QIESIHRNTFASLSNL--HTLIMS----NNKLKRI 406
MN + FK++ RL L L NN ++ + L+ L H L++ L++
Sbjct: 188 PMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKF 246
Query: 407 ESNSLDSLTALSVLSLDNNELEYIEE------NALKNSTS----------LQDFHLNGN- 449
+ ++L+ L L++ L+Y + N L N +S ++DF N
Sbjct: 247 DKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGW 306
Query: 450 --------KLTEIPKVLRNLHSLKTLDL----GDNLITEINNLSLNSLHQLAGLRLTENN 497
K + P + L SLK L G N +E++ L L L L+ N
Sbjct: 307 QHLELVNCKFGQFPTL--KLKSLKRLTFTSNKGGNAFSEVD------LPSLEFLDLSRNG 358
Query: 498 IS---NISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIG--GL 552
+S S+ F S L L+L+ N + + + F L + + L + +
Sbjct: 359 LSFKGCCSQSDFGTTS-LKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSV 416
Query: 553 FPKLPNLVWLNISENLLEWFDYALIP--ADLQWLDIHGNQISELGNYF-EIESQLR-LTY 608
F L NL++L+IS + + L+ L + GN E N+ +I ++LR LT+
Sbjct: 417 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE--NFLPDIFTELRNLTF 474
Query: 609 FDASSNKLTELTGNAIP--HSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNIN 666
D S +L +L+ A S++ L +++N + + + +L +D N +
Sbjct: 475 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSK 534
Query: 667 QTALRISPLPSHKNIPDFYIGENPFQCDCN----MQWLQ 701
+ L+ P ++ + +N F C C +QW++
Sbjct: 535 KQELQHFP----SSLAFLNLTQNDFACTCEHQSFLQWIK 569
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 82/162 (50%), Gaps = 4/162 (2%)
Query: 346 VVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKR 405
+L+++ N + + RL L+L+ ++ + + +L L TL +S+N+L+
Sbjct: 34 TILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLSHNQLQS 91
Query: 406 IESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPK-VLRNLHSL 464
+ +L AL+VL + N L + AL+ LQ+ +L GN+L +P +L L
Sbjct: 92 LPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 465 KTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVF 506
+ L L +N +TE+ LN L L L L EN++ I KG F
Sbjct: 151 EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 77/181 (42%), Gaps = 8/181 (4%)
Query: 284 IPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLH 343
+PP+L +D ++L N + + T+L L+L ELT+ V+ L
Sbjct: 25 LPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGT----LP 77
Query: 344 RLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKL 403
L L++++N++ L + + L L VL + N++ S+ L L L + N+L
Sbjct: 78 VLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Query: 404 KRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHS 463
K + L L LSL NN L + L +L L N L IPK H
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHL 196
Query: 464 L 464
L
Sbjct: 197 L 197
Score = 46.6 bits (109), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 64/155 (41%), Gaps = 27/155 (17%)
Query: 813 NRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFE 872
NR+ + + G +LQ L+L + ++T+ +L L L +N LTE+
Sbjct: 110 NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLN 169
Query: 873 RLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSSQIQSITLTSNP 932
LENL L LQ N + I F S + FA H NP
Sbjct: 170 GLENLDTLLLQENSLYTIPKGFFGS------------HLLPFAFLH-----------GNP 206
Query: 933 WSCDCDFTEKFRDYLQRSRSSVHDISQ---IRCMT 964
W C+C+ FR +LQ + +V+ Q ++ MT
Sbjct: 207 WLCNCEIL-YFRRWLQDNAENVYVWKQGVDVKAMT 240
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 71/154 (46%), Gaps = 2/154 (1%)
Query: 396 LIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIP 455
L +S N L +L T L+ L+LD EL ++ + L L+ N+L +P
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDG--TLPVLGTLDLSHNQLQSLP 93
Query: 456 KVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTIL 515
+ + L +L LD+ N +T + +L L +L L L N + + G+ L L
Sbjct: 94 LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL 153
Query: 516 NLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDI 549
+LA+N + ++ AG + NL + L N L I
Sbjct: 154 SLANNNLTELPAGLLNGLENLDTLLLQENSLYTI 187
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 62/156 (39%), Gaps = 34/156 (21%)
Query: 190 LQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQE 249
L L L+L+ N+L ++ + L VLD+S N SLP L LQE
Sbjct: 76 LPVLGTLDLSHNQLQSLPLL-------GQTLPALTVLDVSFNRLTSLPLGALRGLGELQE 128
Query: 250 LYLQGNILTFLADHALDGXXXXXXXXXXXXXXXXIPPELFNQSRDLKEVYLQNNSINVLA 309
LYL+GN L L PP L + L+++ L NN++ L
Sbjct: 129 LYLKGNELKTL------------------------PPGLLTPTPKLEKLSLANNNLTELP 164
Query: 310 PGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRL 345
G+ N L L L L N L + F G H L
Sbjct: 165 AGLLNGLENLDTLLLQENSL---YTIPKGFFGSHLL 197
Score = 33.5 bits (75), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 83/207 (40%), Gaps = 49/207 (23%)
Query: 548 DIGGLFPKLP-NLVWLNISENLLEWFDYA-LIP-----------ADLQWLDIHGNQISEL 594
++ L P LP + L++SENLL F A L+P A+L L + G + L
Sbjct: 21 NLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGT-LPVL 79
Query: 595 GNYFEIESQLR-----------LTYFDASSNKLTELTGNAIPH--SVENLFLTNNLISKV 641
G +QL+ LT D S N+LT L A+ ++ L+L N + +
Sbjct: 80 GTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL 139
Query: 642 QPYTFFMKPNLTRVDLVGNRLKNINQTALR----ISPLPSHKN----IPDFYIGE----- 688
P P L ++ L N L + L + L +N IP + G
Sbjct: 140 PPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPF 199
Query: 689 -----NPFQCDCNM----QWLQSYSVN 706
NP+ C+C + +WLQ + N
Sbjct: 200 AFLHGNPWLCNCEILYFRRWLQDNAEN 226
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 82/162 (50%), Gaps = 4/162 (2%)
Query: 346 VVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKR 405
+L+++ N + + RL L+L+ ++ + + +L L TL +S+N+L+
Sbjct: 34 TILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLSHNQLQS 91
Query: 406 IESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPK-VLRNLHSL 464
+ +L AL+VL + N L + AL+ LQ+ +L GN+L +P +L L
Sbjct: 92 LPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 465 KTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVF 506
+ L L +N +TE+ LN L L L L EN++ I KG F
Sbjct: 151 EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 77/181 (42%), Gaps = 8/181 (4%)
Query: 284 IPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLH 343
+PP+L +D ++L N + + T+L L+L ELT+ V+ L
Sbjct: 25 LPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGT----LP 77
Query: 344 RLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKL 403
L L++++N++ L + + L L VL + N++ S+ L L L + N+L
Sbjct: 78 VLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Query: 404 KRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHS 463
K + L L LSL NN L + L +L L N L IPK H
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHL 196
Query: 464 L 464
L
Sbjct: 197 L 197
Score = 46.6 bits (109), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 64/155 (41%), Gaps = 27/155 (17%)
Query: 813 NRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFE 872
NR+ + + G +LQ L+L + ++T+ +L L L +N LTE+
Sbjct: 110 NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLN 169
Query: 873 RLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSSQIQSITLTSNP 932
LENL L LQ N + I F S + FA H NP
Sbjct: 170 GLENLDTLLLQENSLYTIPKGFFGS------------HLLPFAFLH-----------GNP 206
Query: 933 WSCDCDFTEKFRDYLQRSRSSVHDISQ---IRCMT 964
W C+C+ FR +LQ + +V+ Q ++ MT
Sbjct: 207 WLCNCEIL-YFRRWLQDNAENVYVWKQGVDVKAMT 240
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 71/154 (46%), Gaps = 2/154 (1%)
Query: 396 LIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIP 455
L +S N L +L T L+ L+LD EL ++ + L L+ N+L +P
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDG--TLPVLGTLDLSHNQLQSLP 93
Query: 456 KVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTIL 515
+ + L +L LD+ N +T + +L L +L L L N + + G+ L L
Sbjct: 94 LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL 153
Query: 516 NLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDI 549
+LA+N + ++ AG + NL + L N L I
Sbjct: 154 SLANNNLTELPAGLLNGLENLDTLLLQENSLYTI 187
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 62/156 (39%), Gaps = 34/156 (21%)
Query: 190 LQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQE 249
L L L+L+ N+L ++ + L VLD+S N SLP L LQE
Sbjct: 76 LPVLGTLDLSHNQLQSLPLL-------GQTLPALTVLDVSFNRLTSLPLGALRGLGELQE 128
Query: 250 LYLQGNILTFLADHALDGXXXXXXXXXXXXXXXXIPPELFNQSRDLKEVYLQNNSINVLA 309
LYL+GN L L PP L + L+++ L NN++ L
Sbjct: 129 LYLKGNELKTL------------------------PPGLLTPTPKLEKLSLANNNLTELP 164
Query: 310 PGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRL 345
G+ N L L L L N L + F G H L
Sbjct: 165 AGLLNGLENLDTLLLQENSL---YTIPKGFFGSHLL 197
Score = 33.5 bits (75), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 83/207 (40%), Gaps = 49/207 (23%)
Query: 548 DIGGLFPKLP-NLVWLNISENLLEWFDYA-LIP-----------ADLQWLDIHGNQISEL 594
++ L P LP + L++SENLL F A L+P A+L L + G + L
Sbjct: 21 NLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGT-LPVL 79
Query: 595 GNYFEIESQLR-----------LTYFDASSNKLTELTGNAIPH--SVENLFLTNNLISKV 641
G +QL+ LT D S N+LT L A+ ++ L+L N + +
Sbjct: 80 GTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL 139
Query: 642 QPYTFFMKPNLTRVDLVGNRLKNINQTALR----ISPLPSHKN----IPDFYIGE----- 688
P P L ++ L N L + L + L +N IP + G
Sbjct: 140 PPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPF 199
Query: 689 -----NPFQCDCNM----QWLQSYSVN 706
NP+ C+C + +WLQ + N
Sbjct: 200 AFLHGNPWLCNCEILYFRRWLQDNAEN 226
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 57.8 bits (138), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 82/162 (50%), Gaps = 4/162 (2%)
Query: 346 VVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKR 405
+L+++ N + + RL L+L+ ++ + + +L L TL +S+N+L+
Sbjct: 35 TILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVD--GTLPVLGTLDLSHNQLQS 92
Query: 406 IESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPK-VLRNLHSL 464
+ +L AL+VL + N L + AL+ LQ+ +L GN+L +P +L L
Sbjct: 93 LPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 151
Query: 465 KTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVF 506
+ L L +N +TE+ LN L L L L EN++ I KG F
Sbjct: 152 EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 193
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 77/181 (42%), Gaps = 8/181 (4%)
Query: 284 IPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLH 343
+PP+L +D ++L N + + T+L L+L ELT+ V+ L
Sbjct: 26 LPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGT----LP 78
Query: 344 RLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKL 403
L L++++N++ L + + L L VL + N++ S+ L L L + N+L
Sbjct: 79 VLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 137
Query: 404 KRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHS 463
K + L L LSL NN L + L +L L N L IPK H
Sbjct: 138 KTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHL 197
Query: 464 L 464
L
Sbjct: 198 L 198
Score = 47.0 bits (110), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 64/155 (41%), Gaps = 27/155 (17%)
Query: 813 NRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFE 872
NR+ + + G +LQ L+L + ++T+ +L L L +N LTE+
Sbjct: 111 NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLN 170
Query: 873 RLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSSQIQSITLTSNP 932
LENL L LQ N + I F S + FA H NP
Sbjct: 171 GLENLDTLLLQENSLYTIPKGFFGS------------HLLPFAFLH-----------GNP 207
Query: 933 WSCDCDFTEKFRDYLQRSRSSVHDISQ---IRCMT 964
W C+C+ FR +LQ + +V+ Q ++ MT
Sbjct: 208 WLCNCEIL-YFRRWLQDNAENVYVWKQGVDVKAMT 241
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 71/154 (46%), Gaps = 2/154 (1%)
Query: 396 LIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIP 455
L +S N L +L T L+ L+LD EL ++ + L L+ N+L +P
Sbjct: 37 LHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDG--TLPVLGTLDLSHNQLQSLP 94
Query: 456 KVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTIL 515
+ + L +L LD+ N +T + +L L +L L L N + + G+ L L
Sbjct: 95 LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL 154
Query: 516 NLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDI 549
+LA+N + ++ AG + NL + L N L I
Sbjct: 155 SLANNNLTELPAGLLNGLENLDTLLLQENSLYTI 188
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 62/156 (39%), Gaps = 34/156 (21%)
Query: 190 LQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQE 249
L L L+L+ N+L ++ + L VLD+S N SLP L LQE
Sbjct: 77 LPVLGTLDLSHNQLQSLPLL-------GQTLPALTVLDVSFNRLTSLPLGALRGLGELQE 129
Query: 250 LYLQGNILTFLADHALDGXXXXXXXXXXXXXXXXIPPELFNQSRDLKEVYLQNNSINVLA 309
LYL+GN L L PP L + L+++ L NN++ L
Sbjct: 130 LYLKGNELKTL------------------------PPGLLTPTPKLEKLSLANNNLTELP 165
Query: 310 PGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRL 345
G+ N L L L L N L + F G H L
Sbjct: 166 AGLLNGLENLDTLLLQENSL---YTIPKGFFGSHLL 198
Score = 31.2 bits (69), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 82/207 (39%), Gaps = 49/207 (23%)
Query: 548 DIGGLFPKLP-NLVWLNISENLLEWFDYA-LIP-----------ADLQWLDIHGNQISEL 594
++ L P LP + L++SENLL F A L+P +L L + G + L
Sbjct: 22 NLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGT-LPVL 80
Query: 595 GNYFEIESQLR-----------LTYFDASSNKLTELTGNAIPH--SVENLFLTNNLISKV 641
G +QL+ LT D S N+LT L A+ ++ L+L N + +
Sbjct: 81 GTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL 140
Query: 642 QPYTFFMKPNLTRVDLVGNRLKNINQTALR----ISPLPSHKN----IPDFYIGE----- 688
P P L ++ L N L + L + L +N IP + G
Sbjct: 141 PPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPF 200
Query: 689 -----NPFQCDCNM----QWLQSYSVN 706
NP+ C+C + +WLQ + N
Sbjct: 201 AFLHGNPWLCNCEILYFRRWLQDNAEN 227
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 57.8 bits (138), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 82/162 (50%), Gaps = 4/162 (2%)
Query: 346 VVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKR 405
+L+++ N + + RL L+L+ ++ + + +L L TL +S+N+L+
Sbjct: 34 TILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVD--GTLPVLGTLDLSHNQLQS 91
Query: 406 IESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPK-VLRNLHSL 464
+ +L AL+VL + N L + AL+ LQ+ +L GN+L +P +L L
Sbjct: 92 LPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 465 KTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVF 506
+ L L +N +TE+ LN L L L L EN++ I KG F
Sbjct: 151 EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 77/181 (42%), Gaps = 8/181 (4%)
Query: 284 IPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLH 343
+PP+L +D ++L N + + T+L L+L ELT+ V+ L
Sbjct: 25 LPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGT----LP 77
Query: 344 RLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKL 403
L L++++N++ L + + L L VL + N++ S+ L L L + N+L
Sbjct: 78 VLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Query: 404 KRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHS 463
K + L L LSL NN L + L +L L N L IPK H
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHL 196
Query: 464 L 464
L
Sbjct: 197 L 197
Score = 46.6 bits (109), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 64/155 (41%), Gaps = 27/155 (17%)
Query: 813 NRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFE 872
NR+ + + G +LQ L+L + ++T+ +L L L +N LTE+
Sbjct: 110 NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLN 169
Query: 873 RLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSSQIQSITLTSNP 932
LENL L LQ N + I F S + FA H NP
Sbjct: 170 GLENLDTLLLQENSLYTIPKGFFGS------------HLLPFAFLH-----------GNP 206
Query: 933 WSCDCDFTEKFRDYLQRSRSSVHDISQ---IRCMT 964
W C+C+ FR +LQ + +V+ Q ++ MT
Sbjct: 207 WLCNCEIL-YFRRWLQDNAENVYVWKQGVDVKAMT 240
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 71/154 (46%), Gaps = 2/154 (1%)
Query: 396 LIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIP 455
L +S N L +L T L+ L+LD EL ++ + L L+ N+L +P
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDG--TLPVLGTLDLSHNQLQSLP 93
Query: 456 KVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTIL 515
+ + L +L LD+ N +T + +L L +L L L N + + G+ L L
Sbjct: 94 LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL 153
Query: 516 NLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDI 549
+LA+N + ++ AG + NL + L N L I
Sbjct: 154 SLANNNLTELPAGLLNGLENLDTLLLQENSLYTI 187
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 62/156 (39%), Gaps = 34/156 (21%)
Query: 190 LQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQE 249
L L L+L+ N+L ++ + L VLD+S N SLP L LQE
Sbjct: 76 LPVLGTLDLSHNQLQSLPLL-------GQTLPALTVLDVSFNRLTSLPLGALRGLGELQE 128
Query: 250 LYLQGNILTFLADHALDGXXXXXXXXXXXXXXXXIPPELFNQSRDLKEVYLQNNSINVLA 309
LYL+GN L L PP L + L+++ L NN++ L
Sbjct: 129 LYLKGNELKTL------------------------PPGLLTPTPKLEKLSLANNNLTELP 164
Query: 310 PGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRL 345
G+ N L L L L N L + F G H L
Sbjct: 165 AGLLNGLENLDTLLLQENSL---YTIPKGFFGSHLL 197
Score = 33.5 bits (75), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 82/207 (39%), Gaps = 49/207 (23%)
Query: 548 DIGGLFPKLP-NLVWLNISENLLEWFDYA-LIP-----------ADLQWLDIHGNQISEL 594
D+ L P LP + L++SENLL F A L+P +L L + G + L
Sbjct: 21 DLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGT-LPVL 79
Query: 595 GNYFEIESQLR-----------LTYFDASSNKLTELTGNAIPH--SVENLFLTNNLISKV 641
G +QL+ LT D S N+LT L A+ ++ L+L N + +
Sbjct: 80 GTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL 139
Query: 642 QPYTFFMKPNLTRVDLVGNRLKNINQTALR----ISPLPSHKN----IPDFYIGE----- 688
P P L ++ L N L + L + L +N IP + G
Sbjct: 140 PPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPF 199
Query: 689 -----NPFQCDCNM----QWLQSYSVN 706
NP+ C+C + +WLQ + N
Sbjct: 200 AFLHGNPWLCNCEILYFRRWLQDNAEN 226
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 57.4 bits (137), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 99/343 (28%), Positives = 159/343 (46%), Gaps = 53/343 (15%)
Query: 294 DLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYN 353
+L + L NN I + P LT L L+LS+N +++ + SGL L L+ N
Sbjct: 113 NLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISD----ISALSGLTSLQQLSFG-N 165
Query: 354 KMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDS 413
++ L +L L+ L + +N++ I A L+NL +LI +NN++ I
Sbjct: 166 QVTDLKP--LANLTTLERLDISSNKVSDIS--VLAKLTNLESLIATNNQISDI------- 214
Query: 414 LTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNL 473
T L +L T+L + LNGN+L +I L +L +L LDL +N
Sbjct: 215 -TPLGIL------------------TNLDELSLNGNQLKDI-GTLASLTNLTDLDLANN- 253
Query: 474 ITEINNLS-LNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDN 532
+I+NL+ L+ L +L L+L N ISNIS L+ LT L L N+++ + N
Sbjct: 254 --QISNLAPLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISN 307
Query: 533 NSNLVAIRLDGNYLTDIGGL--FPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQ 590
NL + L N ++DI + KL L + N N + ++ WL NQ
Sbjct: 308 LKNLTYLTLYFNNISDISPVSSLTKLQRLFFYN---NKVSDVSSLANLTNINWLSAGHNQ 364
Query: 591 ISELGNYFEIESQLRLTYFDAS-SNKLTELTGN-AIPHSVENL 631
IS+L + +L D + +N N +IP++V+N+
Sbjct: 365 ISDLTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNV 407
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 82/268 (30%), Positives = 129/268 (48%), Gaps = 23/268 (8%)
Query: 414 LTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNL 473
L L+ ++ NN+L I LKN T L D +N N++ +I L NL +L L L +N
Sbjct: 67 LNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQ 123
Query: 474 ITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNN 533
IT+I+ L +L L L L+ N IS+IS LS LT L S Q + N
Sbjct: 124 ITDID--PLKNLTNLNRLELSSNTISDIS-----ALSGLTSLQQLSFGNQVTDLKPLANL 176
Query: 534 SNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISE 593
+ L + + N ++DI + KL NL L + N + I +L L ++GNQ+ +
Sbjct: 177 TTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD 235
Query: 594 LGNYFEIESQLRLTYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLT 653
+G + S LT D ++N+++ L + + L L N IS + P LT
Sbjct: 236 IG---TLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTA--LT 290
Query: 654 RVDLVGNRLKNINQTALRISPLPSHKNI 681
++L N+L++ ISP+ + KN+
Sbjct: 291 NLELNENQLED-------ISPISNLKNL 311
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 97/205 (47%), Gaps = 18/205 (8%)
Query: 485 LHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGN 544
L+ L + + N +++I+ + L+ L + + +N+I + N +NL + L N
Sbjct: 67 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 122
Query: 545 YLTDIGGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQL 604
+TDI L L NL L +S N + LQ L GNQ+++L + +
Sbjct: 123 QITDIDPL-KNLTNLNRLELSSNTISDISALSGLTSLQQLS-FGNQVTDLKPLANLTTLE 180
Query: 605 RLTYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKN 664
RL D SSNK+++++ A ++E+L TNN IS + P NL + L GN+LK+
Sbjct: 181 RL---DISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILT--NLDELSLNGNQLKD 235
Query: 665 INQTALRISPLPSHKNIPDFYIGEN 689
I L S N+ D + N
Sbjct: 236 -------IGTLASLTNLTDLDLANN 253
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 63/145 (43%), Gaps = 12/145 (8%)
Query: 794 DNQLPPRIPMDA----TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNG 849
+NQ+ P+ TEL L N+I + G L L LN + +E I +
Sbjct: 252 NNQISNLAPLSGLTKLTELKLGANQISNI--SPLAGLTALTNLELNENQLEDIS--PISN 307
Query: 850 LKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHN 909
LK L L L N +++I L L+ L+ NK+ +S + +LT++ L HN
Sbjct: 308 LKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFYNNKVSDVS--SLANLTNINWLSAGHN 363
Query: 910 RITSFAVWHLSSQIQSITLTSNPWS 934
+I+ ++I + L W+
Sbjct: 364 QISDLTPLANLTRITQLGLNDQAWT 388
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 73/283 (25%), Positives = 125/283 (44%), Gaps = 58/283 (20%)
Query: 338 TFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIES--IHRNTFASLSNLHT 395
TF GL L++L + YN+ +L++ F L L+VL L ++ + N F L++L
Sbjct: 74 TFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEM 133
Query: 396 LIMSNNKLKRIESNSLD-SLTALSVLSLDNNELEYIEENALKN------------STSLQ 442
L++ +N +K+I+ S ++ VL L N+++ I E L N S +LQ
Sbjct: 134 LVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQ 193
Query: 443 DFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLI--------------TEINNLSLNSLHQL 488
D + + +N S+ TLDL N T+I +L L++ + +
Sbjct: 194 DMNEYWLGWEKCGNPFKNT-SITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNM 252
Query: 489 A-----------------GLR--------LTENNISNISKGVFEKLSVLTILNLASNKIQ 523
GL L+++ I + K VF + L L LA N+I
Sbjct: 253 GSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN 312
Query: 524 KVEAGTFDNNSNLVAIRLDGNYLTDI-GGLFPKLPNL--VWLN 563
K++ F ++L + LD N L + G+F +L +L +WL+
Sbjct: 313 KIDDNAFWGLTHLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 355
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 88/207 (42%), Gaps = 26/207 (12%)
Query: 792 GYDNQLPPRIPMDATELYLDGNRIPVVGSHSF---IGRKKLQILFLNSSH---------- 838
G++ P T L L GN + F I K+Q L L++S+
Sbjct: 201 GWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTN 260
Query: 839 VETIHNKTFNGLKELIILRLD--DNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFL 896
+ N TF GL+ + D +++ + F +L +L L N+I I + F
Sbjct: 261 FKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFW 320
Query: 897 SLTHLKVLQLDHNRITSF--AVWHLSSQIQSITLTSNPWSCDCDFTEKFRDYLQR--SRS 952
LTHLK L LD N++ S ++ + +Q I L +NPW C C DYL R +++
Sbjct: 321 GLTHLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI----DYLSRWLNKN 376
Query: 953 SVHDISQIRCMTGSEVGFTIMRTVIPS 979
S + +C S G + + P+
Sbjct: 377 SQKEQGSAKC---SGSGKPVRSIICPT 400
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 71/147 (48%), Gaps = 15/147 (10%)
Query: 317 TQLIVLDLSNNELTE----EWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKD------- 365
T + LDLS N E + +A + + L++ N +YN + + FKD
Sbjct: 212 TSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSN-SYNMGSSFGHTNFKDPDNFTFK 270
Query: 366 ---LYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSL 422
++ L ++I ++ ++ F+ ++L L ++ N++ +I+ N+ LT L L+L
Sbjct: 271 GLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLKELAL 330
Query: 423 DNNELEYIEENALKNSTSLQDFHLNGN 449
D N+L+ + + TSLQ L+ N
Sbjct: 331 DTNQLKSVPDGIFDRLTSLQKIWLHTN 357
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 57/135 (42%), Gaps = 10/135 (7%)
Query: 787 DCSTGGYDN-------QLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHV 839
+CS GY+ P +P + L N I + SF + LQ L +
Sbjct: 7 ECSVIGYNAICINRGLHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTP 66
Query: 840 E-TIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKI--IYISNRTFL 896
I N TF GL LIIL+LD N+ ++ F L NL L L + +S F
Sbjct: 67 GLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFK 126
Query: 897 SLTHLKVLQLDHNRI 911
LT L++L L N I
Sbjct: 127 PLTSLEMLVLRDNNI 141
Score = 37.4 bits (85), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 54/122 (44%), Gaps = 15/122 (12%)
Query: 459 RNLHSLKTL-------DLGDNLITEINNLSLNSLHQLAGLRLTENNIS-NISKGVFEKLS 510
R LH + L DL N I E+N S + L L L++ + I F LS
Sbjct: 20 RGLHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLS 79
Query: 511 VLTILNLASNKIQKVEAGTFDNNSNLVAI-----RLDGNYLTDIGGLFPKLPNLVWLNIS 565
L IL L N+ ++E G F+ +NL + LDG L+ G F L +L L +
Sbjct: 80 SLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLS--GNFFKPLTSLEMLVLR 137
Query: 566 EN 567
+N
Sbjct: 138 DN 139
Score = 36.6 bits (83), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 54/113 (47%), Gaps = 5/113 (4%)
Query: 322 LDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMN-KLDSSIFKDLYRLQVLHLENNQIE 380
+DLS N + E +N +FS L L L + + ++ F+ L L +L L+ NQ
Sbjct: 35 VDLSLNSIAE--LNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL 92
Query: 381 SIHRNTFASLSNLHTLIMSNNKLKR--IESNSLDSLTALSVLSLDNNELEYIE 431
+ F L+NL L ++ L + N LT+L +L L +N ++ I+
Sbjct: 93 QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQ 145
Score = 33.5 bits (75), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 8/78 (10%)
Query: 179 IWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGI-NLRVLDLSNNSFDSLP 237
I+ L ++F L L L QN+++ + D A G+ +L+ L L N S+P
Sbjct: 287 IFALLKSVFSHFTDLEQLTLAQNEINKID-------DNAFWGLTHLKELALDTNQLKSVP 339
Query: 238 AEGFSRLSRLQELYLQGN 255
F RL+ LQ+++L N
Sbjct: 340 DGIFDRLTSLQKIWLHTN 357
Score = 31.2 bits (69), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 48/84 (57%), Gaps = 21/84 (25%)
Query: 627 SVENLFLTNNLISKVQPYTFFMKPNLTR---VDLVGNRLKNINQ-----------TALRI 672
S+E L L +N I K+QP +FF+ N+ R +DL N++K+I + T LR+
Sbjct: 130 SLEMLVLRDNNIKKIQPASFFL--NMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRL 187
Query: 673 SPLPSHKNIPDFYIG----ENPFQ 692
S + + +++ ++++G NPF+
Sbjct: 188 SSI-TLQDMNEYWLGWEKCGNPFK 210
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 89/203 (43%), Gaps = 27/203 (13%)
Query: 190 LQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQE 249
L SLSYL+L++N LS S+S+ T +LR LDLS N + A F L LQ
Sbjct: 344 LPSLSYLDLSRNALSFSGCCSYSDLGTN----SLRHLDLSFNGAIIMSA-NFMGLEELQH 398
Query: 250 LYLQGNILTFLADHALDGXXXXXXXXXXXXXXXXIPPELFNQSRDLKEVYLQNNSINVLA 309
L Q + L + + + + N D ++L S+N L
Sbjct: 399 LDFQHSTLKRVTEFS---------AFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLK 449
Query: 310 -----------PGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKL 358
+F T L LDLS +L E ++ F LHRL +LN+++N + L
Sbjct: 450 MAGNSFKDNTLSNVFANTTNLTFLDLSKCQL--EQISWGVFDTLHRLQLLNMSHNNLLFL 507
Query: 359 DSSIFKDLYRLQVLHLENNQIES 381
DSS + LY L L N+IE+
Sbjct: 508 DSSHYNQLYSLSTLDCSFNRIET 530
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 55/119 (46%)
Query: 795 NQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELI 854
+++P IP + L N + ++ S+SF +LQ L L+ +ETI +K ++GL L
Sbjct: 19 SKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLS 78
Query: 855 ILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITS 913
L L N + F L +L L K+ + + L LK L + HN I S
Sbjct: 79 NLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHS 137
Score = 38.9 bits (89), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 80/173 (46%), Gaps = 3/173 (1%)
Query: 307 VLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDL 366
++ F L +L LD ++ L + + F L +L+ L+I+Y IF L
Sbjct: 384 IIMSANFMGLEELQHLDFQHSTL-KRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGL 442
Query: 367 YRLQVLHLENNQI-ESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNN 425
L L + N ++ N FA+ +NL L +S +L++I D+L L +L++ +N
Sbjct: 443 TSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHN 502
Query: 426 ELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNL-HSLKTLDLGDNLITEI 477
L +++ + SL + N++ +L++ SL +L +N + I
Sbjct: 503 NLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACI 555
Score = 38.5 bits (88), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 58/127 (45%), Gaps = 6/127 (4%)
Query: 460 NLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLAS 519
N L+ LDL I I + + + LH L+ L LT N I + S G F L+ L L
Sbjct: 49 NFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVE 108
Query: 520 NKIQKVEAGTFDNNSNLVAIRLDGNYL--TDIGGLFPKLPNLVWLNISENLLEWFDYALI 577
K+ +E+ L + + N++ + F L NLV +++S N ++ +
Sbjct: 109 TKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ----TIT 164
Query: 578 PADLQWL 584
DLQ+L
Sbjct: 165 VNDLQFL 171
Score = 38.5 bits (88), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 81/183 (44%), Gaps = 6/183 (3%)
Query: 322 LDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKL-DSSIFKDLYRLQVLHLENNQIE 380
LDLS N + +A F GL L L+ ++ + ++ + S F L +L L + +
Sbjct: 376 LDLSFNG---AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTK 432
Query: 381 SIHRNTFASLSNLHTLIMSNNKLK-RIESNSLDSLTALSVLSLDNNELEYIEENALKNST 439
F L++L+TL M+ N K SN + T L+ L L +LE I
Sbjct: 433 IDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLH 492
Query: 440 SLQDFHLNGNKLTEIPKVLRN-LHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNI 498
LQ +++ N L + N L+SL TLD N I + + LA LT N++
Sbjct: 493 RLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSV 552
Query: 499 SNI 501
+ I
Sbjct: 553 ACI 555
Score = 37.4 bits (85), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 61/153 (39%), Gaps = 24/153 (15%)
Query: 398 MSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKV 457
+S N LK ++S S + + L L L E+E IE+ K
Sbjct: 34 LSFNPLKILKSYSFSNFSELQWLDLSRCEIETIED-----------------------KA 70
Query: 458 LRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNL 517
LH L L L N I + S + L L L E ++++ +L L LN+
Sbjct: 71 WHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNV 130
Query: 518 ASNKIQKVE-AGTFDNNSNLVAIRLDGNYLTDI 549
A N I + F N +NLV + L NY+ I
Sbjct: 131 AHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI 163
Score = 35.0 bits (79), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 126/571 (22%), Positives = 238/571 (41%), Gaps = 66/571 (11%)
Query: 196 LNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGN 255
++L+ N L + ++SFSN+ L+ LDLS +++ + + L L L L GN
Sbjct: 32 IDLSFNPLKILKSYSFSNFS------ELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN 85
Query: 256 ILTFLADHALDGXXXXXXXXXXXXXXXXIPPELFNQSRDLKEVYLQNNSINVLA-PGIFN 314
+ + + G + Q LK++ + +N I+ P F+
Sbjct: 86 PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFS 145
Query: 315 VLTQLIVLDLSNNELTEEWVNAATFSGLHRLV--VLNIAYNKMNKLDSSIFKDLYRLQVL 372
LT L+ +DLS N + VN F + V L+++ N ++ + F+ + +L L
Sbjct: 146 NLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHEL 204
Query: 373 HLENN-QIESIHRNTFASLSNLHT--LIMSNNKLKR-IESNSLDSLTALSVLSLDNNELE 428
L N +I + +L+ LH LI+ K +R +E + L +++D L
Sbjct: 205 TLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLT 264
Query: 429 Y--------IEENALKNSTSLQDFHLNGNKLTEIPKVLR---------NLHSLKTLDLG- 470
Y ++ + L N +++ ++ L ++PK + L TLDL
Sbjct: 265 YTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPF 324
Query: 471 -DNLITEINNLSLN----SLHQLAGLRLTENNISNISKGVFEKLSV--LTILNLASNKIQ 523
+L +N S++ +L L+ L L+ N +S + L L L+L+ N
Sbjct: 325 LKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG-A 383
Query: 524 KVEAGTFDNNSNLVAIRLDGNYLTDIG--GLFPKLPNLVWLNIS-ENLLEWFDYALIP-A 579
+ + F L + + L + F L L++L+IS N FD +
Sbjct: 384 IIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLT 443
Query: 580 DLQWLDIHGNQISE--LGNYFEIESQLRLTYFDASSNKLTELTGNAIP--HSVENLFLTN 635
L L + GN + L N F + LT+ D S +L +++ H ++ L +++
Sbjct: 444 SLNTLKMAGNSFKDNTLSNVF--ANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSH 501
Query: 636 NLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHKNIPDFYIGENPFQCDC 695
N + + + +L+ +D NR++ ++ L+ P K++ F + N C C
Sbjct: 502 NNLLFLDSSHYNQLYSLSTLDCSFNRIET-SKGILQHFP----KSLAFFNLTNNSVACIC 556
Query: 696 N----MQWLQSYSVNKERNKPNLVDLDTVTC 722
+QW++ K LV+++ +TC
Sbjct: 557 EHQKFLQWVK-------EQKQFLVNVEQMTC 580
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 85/345 (24%), Positives = 147/345 (42%), Gaps = 36/345 (10%)
Query: 221 INLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGXXXXXXXXXXXXX 280
+NL LDL+ + + + F +L L L GN L F+A+ +L+G
Sbjct: 54 MNLTFLDLTRCQINWIHEDTFQSHHQLSTLVLTGNPLIFMAETSLNGPKSLKHLFLIQTG 113
Query: 281 XXXIPPELFNQSRDLKEVYLQNNSINVLA-PGIFNVLTQLIVLDLSNNELTEEWVNAATF 339
+ + +L+ +YL +N I+ + P F L VLD NN + +++
Sbjct: 114 ISNLEFIPVHNLENLESLYLGSNHISSIKFPKDFPA-RNLKVLDFQNNAI--HYISREDM 170
Query: 340 SGLHRLVVLNIAYN-------KMNKLDSSIFKDLY-----RLQVLH--LENNQIESIHRN 385
L + + L++ +N ++ DS+IF+ L L V+ L+N+ +S+
Sbjct: 171 RSLEQAINLSLNFNGNNVKGIELGAFDSTIFQSLNFGGTPNLSVIFNGLQNSTTQSLWLG 230
Query: 386 TFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEY--IEENALKNSTSLQD 443
TF + + + I S L L +SV SL+ E + I + T LQ+
Sbjct: 231 TFEDIDD-----------EDISSAMLKGLCEMSVESLNLQEHRFSDISSTTFQCFTQLQE 279
Query: 444 FHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISK 503
L L +P ++ L+ LK L L N ++ +S + L L + N+ +
Sbjct: 280 LDLTATHLKGLPSGMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLYI-RGNVKKLHL 338
Query: 504 GV--FEKLSVLTILNLASNKIQKVEAGTFD--NNSNLVAIRLDGN 544
GV EKL L L+L+ N I+ + + N S+L + L N
Sbjct: 339 GVGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHN 383
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 76/166 (45%), Gaps = 9/166 (5%)
Query: 348 LNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIE 407
L ++N + + + F L L L L QI IH +TF S L TL+++ N L +
Sbjct: 35 LEFSFNFLPTIHNRTFSRLMNLTFLDLTRCQINWIHEDTFQSHHQLSTLVLTGNPLIFMA 94
Query: 408 SNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEI--PKVL--RNLHS 463
SL+ +L L L + +E + N +L+ +L N ++ I PK RN
Sbjct: 95 ETSLNGPKSLKHLFLIQTGISNLEFIPVHNLENLESLYLGSNHISSIKFPKDFPARN--- 151
Query: 464 LKTLDLGDNLITEINNLSLNSLHQLAGLRL--TENNISNISKGVFE 507
LK LD +N I I+ + SL Q L L NN+ I G F+
Sbjct: 152 LKVLDFQNNAIHYISREDMRSLEQAINLSLNFNGNNVKGIELGAFD 197
Score = 47.0 bits (110), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 84/339 (24%), Positives = 145/339 (42%), Gaps = 42/339 (12%)
Query: 192 SLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELY 251
S+ LNL +++ S++++ +F +C L+ LDL+ LP+ G L+ L++L
Sbjct: 252 SVESLNLQEHRFSDISSTTF------QCFTQLQELDLTATHLKGLPS-GMKGLNLLKKLV 304
Query: 252 LQGNILTFLADHALDGXXXXXXXXXXXXXXXXIPPELFNQSRDLKEVYLQNNSINV-LAP 310
L N L P L +Y++ N + L
Sbjct: 305 LSVNHFDQLCQ----------------ISAANFP--------SLTHLYIRGNVKKLHLGV 340
Query: 311 GIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQ 370
G L L LDLS+N++ + L L LN+++N+ L S FK+ +L+
Sbjct: 341 GCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLE 400
Query: 371 VLHLENNQIE-SIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELE- 428
+L L ++ + ++ F +L L L ++ L + L L L L+L N +
Sbjct: 401 LLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHFQD 460
Query: 429 --YIEENALKNSTSLQDFHLNGNKLTEI-PKVLRNLHSLKTLDLGDNLITEINNLSLNSL 485
+ N L+ SL+ L+ L I + +L + +DL N +T S++SL
Sbjct: 461 GTITKTNLLQTVGSLEVLILSSCGLLSIDQQAFHSLGKMSHVDLSHNSLTCD---SIDSL 517
Query: 486 HQLAG--LRLTENNISNISKGVFEKLSVLTILNLASNKI 522
L G L L N+I+ IS + LS + +NL+ N +
Sbjct: 518 SHLKGIYLNLAANSINIISPRLLPILSQQSTINLSHNPL 556
Score = 36.6 bits (83), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 66/178 (37%), Gaps = 26/178 (14%)
Query: 779 VSWEAN-VIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSS 837
+ EAN +C G +++P +P L N +P + + +F L L L
Sbjct: 6 IEKEANKTYNCENLGL-SEIPDTLPNTTEFLEFSFNFLPTIHNRTFSRLMNLTFLDLTRC 64
Query: 838 HVETIHNKTFNGLKELIILRLDDNRL---------------------TEIRGYEF---ER 873
+ IH TF +L L L N L T I EF
Sbjct: 65 QINWIHEDTFQSHHQLSTLVLTGNPLIFMAETSLNGPKSLKHLFLIQTGISNLEFIPVHN 124
Query: 874 LENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSSQIQSITLTSN 931
LENL LYL N I I +LKVL +N I + + S Q+I L+ N
Sbjct: 125 LENLESLYLGSNHISSIKFPKDFPARNLKVLDFQNNAIHYISREDMRSLEQAINLSLN 182
Score = 33.1 bits (74), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 46/104 (44%)
Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
+ L L GN + + S G K L+ LFL + + + + L+ L L L N ++
Sbjct: 81 STLVLTGNPLIFMAETSLNGPKSLKHLFLIQTGISNLEFIPVHNLENLESLYLGSNHISS 140
Query: 866 IRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHN 909
I+ + NL+ L Q N I YIS SL L L+ N
Sbjct: 141 IKFPKDFPARNLKVLDFQNNAIHYISREDMRSLEQAINLSLNFN 184
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 87/373 (23%), Positives = 145/373 (38%), Gaps = 68/373 (18%)
Query: 187 FCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSR 246
F P+ +L L +++++ F AR NL+VLD NN+ + E L +
Sbjct: 119 FIPVHNLENLESLYLGSNHISSIKFPKDFPAR---NLKVLDFQNNAIHYISREDMRSLEQ 175
Query: 247 LQELYLQ--GNILTFLADHALDGXXXXXXXXXXXXXXXXIPPELFNQSRDLKEVY--LQN 302
L L GN + + A D F + +L ++ LQN
Sbjct: 176 AINLSLNFNGNNVKGIELGAFDSTIFQSLN--------------FGGTPNLSVIFNGLQN 221
Query: 303 NSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVV--LNIAYNKMNKLDS 360
++ L G F ++ +E +++A GL + V LN+ ++ + + S
Sbjct: 222 STTQSLWLGTFE-------------DIDDEDISSAMLKGLCEMSVESLNLQEHRFSDISS 268
Query: 361 SIFKDLYRLQVL-----HLEN---------------------NQIESIHRNTFASLSNLH 394
+ F+ +LQ L HL+ +Q+ I F SL++L+
Sbjct: 269 TTFQCFTQLQELDLTATHLKGLPSGMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLY 328
Query: 395 TLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIE--ENALKNSTSLQDFHLNGNK-L 451
I N K + L+ L L L L +N++E + LKN + LQ +L+ N+ L
Sbjct: 329 --IRGNVKKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPL 386
Query: 452 TEIPKVLRNLHSLKTLDLG-DNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLS 510
+ + L+ LDL L +LH L L LT + ++ + L
Sbjct: 387 GLQSQAFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLP 446
Query: 511 VLTILNLASNKIQ 523
VL LNL N Q
Sbjct: 447 VLRHLNLKGNHFQ 459
Score = 30.4 bits (67), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 139/625 (22%), Positives = 224/625 (35%), Gaps = 133/625 (21%)
Query: 377 NQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALK 436
N + +IH TF+ L NL L ++ ++ I ++ S LS L L N L ++ E +L
Sbjct: 40 NFLPTIHNRTFSRLMNLTFLDLTRCQINWIHEDTFQSHHQLSTLVLTGNPLIFMAETSL- 98
Query: 437 NSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTEN 496
NG PK L++L ++T I+ + + +++L L L L N
Sbjct: 99 ----------NG------PKSLKHLFLIQTG------ISNLEFIPVHNLENLESLYLGSN 136
Query: 497 NISNISKGVFEK------LSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIG 550
+IS+I F K L VL N A + I + + + + NL ++ +GN + I
Sbjct: 137 HISSIK---FPKDFPARNLKVLDFQNNAIHYISREDMRSLEQAINL-SLNFNGNNVKGIE 192
Query: 551 -GLFPKLPNLVWLNISENLLEWFDYALIP---ADLQWLDIHGNQISELGNYFEIESQLRL 606
G F + + ++ P L Q LG + +I+ +
Sbjct: 193 LGAF-----------DSTIFQSLNFGGTPNLSVIFNGLQNSTTQSLWLGTFEDIDDE--- 238
Query: 607 TYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNIN 666
D SS L L SVE+L L + S + TF L +DL LK +
Sbjct: 239 ---DISSAMLKGLC----EMSVESLNLQEHRFSDISSTTFQCFTQLQELDLTATHLKGLP 291
Query: 667 QTALRISPLPSHKNIPDFYIGENPFQCDCNMQWLQSYSVNKERNKPNLVDLDTVTCKLLY 726
S + + + N F C + N P+L L Y
Sbjct: 292 ------SGMKGLNLLKKLVLSVNHFDQLCQI---------SAANFPSLTHL--------Y 328
Query: 727 NRANPAILLKEAHSNQFLCEYETNCAPL-CHCCDFDACDCEMTCPNNCTCYHDVSWEANV 785
R N +K+ H E N L D +A DC N + ++ N
Sbjct: 329 IRGN----VKKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHN- 383
Query: 786 IDCSTGGYDNQLPPRIP------MDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHV 839
G +Q P + T L+++ + P H LQ+L L +
Sbjct: 384 ---EPLGLQSQAFKECPQLELLDLAFTRLHINAPQSPFQNLHF------LQVLNLTYCFL 434
Query: 840 ETIHNKTFNGLKELIILRLDDNRL---TEIRGYEFERLENLRELYLQYNKIIYISNRTFL 896
+T + GL L L L N T + + + +L L L ++ I + F
Sbjct: 435 DTSNQHLLAGLPVLRHLNLKGNHFQDGTITKTNLLQTVGSLEVLILSSCGLLSIDQQAFH 494
Query: 897 SLTHLKVLQLDHNRITSFAVWHLS-------------------------SQIQSITLTSN 931
SL + + L HN +T ++ LS SQ +I L+ N
Sbjct: 495 SLGKMSHVDLSHNSLTCDSIDSLSHLKGIYLNLAANSINIISPRLLPILSQQSTINLSHN 554
Query: 932 PWSCDCD---FTEKFRDYLQRSRSS 953
P C C F +++ L + S
Sbjct: 555 PLDCTCSNIHFLTWYKENLHKLEGS 579
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 89/203 (43%), Gaps = 27/203 (13%)
Query: 190 LQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQE 249
L SLSYL+L++N LS S+S+ T +LR LDLS N + A F L LQ
Sbjct: 349 LPSLSYLDLSRNALSFSGCCSYSDLGTN----SLRHLDLSFNGAIIMSA-NFMGLEELQH 403
Query: 250 LYLQGNILTFLADHALDGXXXXXXXXXXXXXXXXIPPELFNQSRDLKEVYLQNNSINVLA 309
L Q + L + + + + N D ++L S+N L
Sbjct: 404 LDFQHSTLKRVTEFS---------AFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLK 454
Query: 310 -----------PGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKL 358
+F T L LDLS +L E ++ F LHRL +LN+++N + L
Sbjct: 455 MAGNSFKDNTLSNVFANTTNLTFLDLSKCQL--EQISWGVFDTLHRLQLLNMSHNNLLFL 512
Query: 359 DSSIFKDLYRLQVLHLENNQIES 381
DSS + LY L L N+IE+
Sbjct: 513 DSSHYNQLYSLSTLDCSFNRIET 535
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 55/119 (46%)
Query: 795 NQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELI 854
+++P IP + L N + ++ S+SF +LQ L L+ +ETI +K ++GL L
Sbjct: 24 SKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLS 83
Query: 855 ILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITS 913
L L N + F L +L L K+ + + L LK L + HN I S
Sbjct: 84 NLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHS 142
Score = 38.9 bits (89), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 80/173 (46%), Gaps = 3/173 (1%)
Query: 307 VLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDL 366
++ F L +L LD ++ L + + F L +L+ L+I+Y IF L
Sbjct: 389 IIMSANFMGLEELQHLDFQHSTL-KRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGL 447
Query: 367 YRLQVLHLENNQI-ESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNN 425
L L + N ++ N FA+ +NL L +S +L++I D+L L +L++ +N
Sbjct: 448 TSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHN 507
Query: 426 ELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNL-HSLKTLDLGDNLITEI 477
L +++ + SL + N++ +L++ SL +L +N + I
Sbjct: 508 NLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACI 560
Score = 38.5 bits (88), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 58/127 (45%), Gaps = 6/127 (4%)
Query: 460 NLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLAS 519
N L+ LDL I I + + + LH L+ L LT N I + S G F L+ L L
Sbjct: 54 NFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVE 113
Query: 520 NKIQKVEAGTFDNNSNLVAIRLDGNYL--TDIGGLFPKLPNLVWLNISENLLEWFDYALI 577
K+ +E+ L + + N++ + F L NLV +++S N ++ +
Sbjct: 114 TKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ----TIT 169
Query: 578 PADLQWL 584
DLQ+L
Sbjct: 170 VNDLQFL 176
Score = 38.5 bits (88), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 81/183 (44%), Gaps = 6/183 (3%)
Query: 322 LDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKL-DSSIFKDLYRLQVLHLENNQIE 380
LDLS N + +A F GL L L+ ++ + ++ + S F L +L L + +
Sbjct: 381 LDLSFNG---AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTK 437
Query: 381 SIHRNTFASLSNLHTLIMSNNKLK-RIESNSLDSLTALSVLSLDNNELEYIEENALKNST 439
F L++L+TL M+ N K SN + T L+ L L +LE I
Sbjct: 438 IDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLH 497
Query: 440 SLQDFHLNGNKLTEIPKVLRN-LHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNI 498
LQ +++ N L + N L+SL TLD N I + + LA LT N++
Sbjct: 498 RLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSV 557
Query: 499 SNI 501
+ I
Sbjct: 558 ACI 560
Score = 37.4 bits (85), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 61/153 (39%), Gaps = 24/153 (15%)
Query: 398 MSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKV 457
+S N LK ++S S + + L L L E+E IE+ K
Sbjct: 39 LSFNPLKILKSYSFSNFSELQWLDLSRCEIETIED-----------------------KA 75
Query: 458 LRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNL 517
LH L L L N I + S + L L L E ++++ +L L LN+
Sbjct: 76 WHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNV 135
Query: 518 ASNKIQKVE-AGTFDNNSNLVAIRLDGNYLTDI 549
A N I + F N +NLV + L NY+ I
Sbjct: 136 AHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI 168
Score = 34.7 bits (78), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 126/571 (22%), Positives = 238/571 (41%), Gaps = 66/571 (11%)
Query: 196 LNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGN 255
++L+ N L + ++SFSN+ L+ LDLS +++ + + L L L L GN
Sbjct: 37 IDLSFNPLKILKSYSFSNFS------ELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN 90
Query: 256 ILTFLADHALDGXXXXXXXXXXXXXXXXIPPELFNQSRDLKEVYLQNNSINVLA-PGIFN 314
+ + + G + Q LK++ + +N I+ P F+
Sbjct: 91 PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFS 150
Query: 315 VLTQLIVLDLSNNELTEEWVNAATFSGLHRLV--VLNIAYNKMNKLDSSIFKDLYRLQVL 372
LT L+ +DLS N + VN F + V L+++ N ++ + F+ + +L L
Sbjct: 151 NLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHEL 209
Query: 373 HLENN-QIESIHRNTFASLSNLHT--LIMSNNKLKR-IESNSLDSLTALSVLSLDNNELE 428
L N +I + +L+ LH LI+ K +R +E + L +++D L
Sbjct: 210 TLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLT 269
Query: 429 Y--------IEENALKNSTSLQDFHLNGNKLTEIPKVLR---------NLHSLKTLDLG- 470
Y ++ + L N +++ ++ L ++PK + L TLDL
Sbjct: 270 YTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPF 329
Query: 471 -DNLITEINNLSLN----SLHQLAGLRLTENNISNISKGVFEKLSV--LTILNLASNKIQ 523
+L +N S++ +L L+ L L+ N +S + L L L+L+ N
Sbjct: 330 LKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG-A 388
Query: 524 KVEAGTFDNNSNLVAIRLDGNYLTDIG--GLFPKLPNLVWLNIS-ENLLEWFDYALIP-A 579
+ + F L + + L + F L L++L+IS N FD +
Sbjct: 389 IIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLT 448
Query: 580 DLQWLDIHGNQISE--LGNYFEIESQLRLTYFDASSNKLTELTGNAIP--HSVENLFLTN 635
L L + GN + L N F + LT+ D S +L +++ H ++ L +++
Sbjct: 449 SLNTLKMAGNSFKDNTLSNVF--ANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSH 506
Query: 636 NLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHKNIPDFYIGENPFQCDC 695
N + + + +L+ +D NR++ ++ L+ P K++ F + N C C
Sbjct: 507 NNLLFLDSSHYNQLYSLSTLDCSFNRIET-SKGILQHFP----KSLAFFNLTNNSVACIC 561
Query: 696 N----MQWLQSYSVNKERNKPNLVDLDTVTC 722
+QW++ K LV+++ +TC
Sbjct: 562 EHQKFLQWVK-------EQKQFLVNVEQMTC 585
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 57/224 (25%), Positives = 108/224 (48%), Gaps = 24/224 (10%)
Query: 300 LQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLD 359
L++N + L G+F+ LTQL L LS+N L+ + + + G L L++++N + +
Sbjct: 35 LESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM- 93
Query: 360 SSIFKDLYRLQVLHLENNQIESIHR-NTFASLSNLHTLIMSNNKLKRIESNSLDSLTALS 418
SS F L +L+ L +++ ++ + + F SL NL L +S+ + + + L++L
Sbjct: 94 SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 153
Query: 419 VLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEIN 478
VL + N +EN L P + L +L LDL + +++
Sbjct: 154 VLKMAGNS---FQENFL-------------------PDIFTELRNLTFLDLSQCQLEQLS 191
Query: 479 NLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKI 522
+ NSL L L ++ NN ++ ++ L+ L +L+ + N I
Sbjct: 192 PTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 235
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 63/261 (24%), Positives = 107/261 (40%), Gaps = 53/261 (20%)
Query: 177 NSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSL 236
N + +LP +F L L+ L+L+ N LS S S++ T +L+ LDLS N ++
Sbjct: 38 NKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTT----SLKYLDLSFNGVITM 93
Query: 237 PAEGFSRLSRLQELYLQGNILTFLADHALDGXXXXXXXXXXXXXXXXIPPELFNQSRDLK 296
+ F L +L+ L Q + L +++ ++ F R+L
Sbjct: 94 -SSNFLGLEQLEHLDFQHSNLKQMSEFSV-----------------------FLSLRNLI 129
Query: 297 EVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMN 356
+ + + V GIFN L+ L VL ++ N E ++
Sbjct: 130 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL---------------------- 167
Query: 357 KLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTA 416
IF +L L L L Q+E + F SLS+L L MS+N +++ L +
Sbjct: 168 ---PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNS 224
Query: 417 LSVLSLDNNELEYIEENALKN 437
L VL N + ++ L++
Sbjct: 225 LQVLDYSLNHIMTSKKQELQH 245
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 71/173 (41%), Gaps = 29/173 (16%)
Query: 823 FIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE-IRGYEFERLENLRELY 881
F+ + L L ++ +H N FNGL L +L++ N E F L NL L
Sbjct: 122 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 181
Query: 882 LQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVW------------------------ 917
L ++ +S F SL+ L+VL + HN S +
Sbjct: 182 LSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ 241
Query: 918 ---HLSSQIQSITLTSNPWSCDCDFTEKFRDYLQRSRSSVHDISQIRCMTGSE 967
H S + + LT N ++C C+ + F +++ R + ++ ++ C T S+
Sbjct: 242 ELQHFPSSLAFLNLTQNDFACTCEH-QSFLQWIKDQRQLLVEVERMECATPSD 293
Score = 38.5 bits (88), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 99/229 (43%), Gaps = 20/229 (8%)
Query: 491 LRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIG 550
+R ++++ G+ S T L L SNK+Q + G FD + L + L N L+ G
Sbjct: 12 IRCNSKGLTSVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKG 68
Query: 551 GLFPK---LPNLVWLNISEN-LLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRL 606
+L +L++S N ++ L L+ LD + + ++ + S L
Sbjct: 69 CCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 128
Query: 607 TYFDASSNKLTELTGNAIPHSVENL----FLTNNLISKVQPYTFFMKPNLTRVDLVGNRL 662
Y D S T + N I + + +L N+ P F NLT +DL +L
Sbjct: 129 IYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 187
Query: 663 KNINQTAL-RISPLP----SHKNIPDFYIGENPFQCDCNMQWLQSYSVN 706
+ ++ TA +S L SH N F + P++C ++Q L YS+N
Sbjct: 188 EQLSPTAFNSLSSLQVLNMSHNNF--FSLDTFPYKCLNSLQVLD-YSLN 233
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 53.5 bits (127), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 77/310 (24%), Positives = 138/310 (44%), Gaps = 29/310 (9%)
Query: 347 VLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRI 406
VL ++N + + ++ F L L L L QI +H +TF S L+T++++ N L +
Sbjct: 36 VLEFSFNFLPTIQNTTFSRLINLIFLDLTRCQINWVHEDTFQSHHQLNTIVLTGNPLIFM 95
Query: 407 ESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEI--PKVLRNLHSL 464
SL L L L + +E + N +L+ HL N ++ I P+ +L
Sbjct: 96 AETSLTGPKFLKHLFLTQTGISNLEFIPVHNLENLESLHLGSNHISSINLPENFPT-QNL 154
Query: 465 KTLDLGDNLITEINNLSLNSLHQLAGLRL--TENNISNISKG-----VFEKLSVLTILN- 516
K LD +N I I+ NSL Q L L N+I I G +F+ L LN
Sbjct: 155 KVLDFQNNAIHYISRKDTNSLEQATNLSLNFNGNDIKGIEPGAFISKIFQSLKFGGSLNL 214
Query: 517 ------LASNKIQKVEAGTFDNNSN--LVAIRLDGNYLTDIGGLFPKLPNLVWLNISENL 568
L ++ +Q + GTF++ + L + +G L D+ L + ++S +
Sbjct: 215 FIIFKGLQNSTLQSLWLGTFEDTDDQYLTSATFEG--LCDMSVESINLQKHRFSDLSSST 272
Query: 569 LEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASS-NKLTELTGNAIPHS 627
F +Q LD+ ++ L + E + L+ +A+S ++L ++ + P S
Sbjct: 273 FRCF------TRVQELDLTAAHLNGLPSGIEGMNSLKKLVLNANSFDQLCQINAASFP-S 325
Query: 628 VENLFLTNNL 637
+ +L++ N+
Sbjct: 326 LRDLYIKGNM 335
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 84/339 (24%), Positives = 143/339 (42%), Gaps = 42/339 (12%)
Query: 192 SLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELY 251
S+ +NL +++ S++++ +F RC ++ LDL+ + LP+ G ++ L++L
Sbjct: 254 SVESINLQKHRFSDLSSSTF------RCFTRVQELDLTAAHLNGLPS-GIEGMNSLKKLV 306
Query: 252 LQGNILTFLADHALDGXXXXXXXXXXXXXXXXIPPELFNQSRDLKEVYLQNNSINV-LAP 310
L N L I F RDL Y++ N + L
Sbjct: 307 LNANSFDQLCQ---------------------INAASFPSLRDL---YIKGNMRKLDLGT 342
Query: 311 GIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQ 370
L L LDLS++++ L L LN++YN+ L+ FK+ +L+
Sbjct: 343 RCLEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLE 402
Query: 371 VLHLENNQIE-SIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELE- 428
+L + + + F +L L L +S+ L + L L L L+L N +
Sbjct: 403 LLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQD 462
Query: 429 --YIEENALKNSTSLQDFHLNGNKLTEI-PKVLRNLHSLKTLDLGDNLITEINNLSLNSL 485
+ N L+ SL+ L+ L I + L ++ LDL N +T S+++L
Sbjct: 463 GSISKTNLLQMVGSLEILILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLT---GDSMDAL 519
Query: 486 HQLAGLRL--TENNISNISKGVFEKLSVLTILNLASNKI 522
L GL L NNI I + LS +I+NL+ N +
Sbjct: 520 SHLKGLYLNMASNNIRIIPPHLLPALSQQSIINLSHNPL 558
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 130/594 (21%), Positives = 223/594 (37%), Gaps = 137/594 (23%)
Query: 221 INLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDG---XXXXXXXXXX 277
INL LDL+ + + + F +L + L GN L F+A+ +L G
Sbjct: 56 INLIFLDLTRCQINWVHEDTFQSHHQLNTIVLTGNPLIFMAETSLTGPKFLKHLFLTQTG 115
Query: 278 XXXXXXIP----------------------PELFNQSRDLKEVYLQNNSINVLAPGIFNV 315
IP PE F +++LK + QNN+I+ ++ N
Sbjct: 116 ISNLEFIPVHNLENLESLHLGSNHISSINLPENF-PTQNLKVLDFQNNAIHYISRKDTNS 174
Query: 316 LTQLIVLDLSNNELTEEWVNAATF-------------------------SGLHRLVVLNI 350
L Q L L+ N + + F S L L +
Sbjct: 175 LEQATNLSLNFNGNDIKGIEPGAFISKIFQSLKFGGSLNLFIIFKGLQNSTLQSLWLGTF 234
Query: 351 AYNKMNKLDSSIFKDLYRLQV--LHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIES 408
L S+ F+ L + V ++L+ ++ + +TF + + L ++ L + S
Sbjct: 235 EDTDDQYLTSATFEGLCDMSVESINLQKHRFSDLSSSTFRCFTRVQELDLTAAHLNGLPS 294
Query: 409 NSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGN--KLTEIPKVLRNLHSLKT 466
++ + +L L L+ N + + + + SL+D ++ GN KL + L L +L+
Sbjct: 295 -GIEGMNSLKKLVLNANSFDQLCQINAASFPSLRDLYIKGNMRKLDLGTRCLEKLENLQK 353
Query: 467 LDLGDNLI--TEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQ- 523
LDL + I ++ NL L +L L L L+ N + F++ L +L++A +
Sbjct: 354 LDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHV 413
Query: 524 KVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYALIPA--DL 581
K F NL +R+ LN+S LL+ + L+ DL
Sbjct: 414 KAPHSPF---QNLHLLRV--------------------LNLSHCLLDTSNQHLLAGLQDL 450
Query: 582 QWLDIHGNQISELGNYFEIESQLRLTYFDASSNK--LTELTGNAIPHSVENLFLTNNLIS 639
+ L++ GN ++ D S +K L ++ G S+E L L++ +
Sbjct: 451 RHLNLQGN-----------------SFQDGSISKTNLLQMVG-----SLEILILSSCNLL 488
Query: 640 KVQPYTFFMKPNLTRVDLVGNRLK---------------NINQTALRISP---LPSHKNI 681
+ F N+ +DL N L N+ +RI P LP+
Sbjct: 489 SIDQQAFHGLRNVNHLDLSHNSLTGDSMDALSHLKGLYLNMASNNIRIIPPHLLPALSQQ 548
Query: 682 PDFYIGENPFQCDC-NMQWLQSYSVNKERNKPNLVDLDTVTCKLLYNRANPAIL 734
+ NP C C N+ ++ Y N + L D + TC ANP L
Sbjct: 549 SIINLSHNPLDCTCSNIHFITWYKENLHK----LEDSEETTC------ANPPSL 592
Score = 35.0 bits (79), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 46/102 (45%)
Query: 808 LYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIR 867
+ L GN + + S G K L+ LFL + + + + L+ L L L N ++ I
Sbjct: 85 IVLTGNPLIFMAETSLTGPKFLKHLFLTQTGISNLEFIPVHNLENLESLHLGSNHISSIN 144
Query: 868 GYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHN 909
E +NL+ L Q N I YIS + SL L L+ N
Sbjct: 145 LPENFPTQNLKVLDFQNNAIHYISRKDTNSLEQATNLSLNFN 186
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 53.5 bits (127), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 64/261 (24%), Positives = 125/261 (47%), Gaps = 14/261 (5%)
Query: 295 LKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNK 354
+K + L NN I ++ L L L++N + + +FS L L L+++YN
Sbjct: 54 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINT--IEEDSFSSLGSLEHLDLSYNY 111
Query: 355 MNKLDSSIFKDLYRLQVLHLENNQIESIHRNT-FASLSNLHTLIMSN-NKLKRIESNSLD 412
++ L SS FK L L L+L N +++ + F+ L+ L L + N + +I+
Sbjct: 112 LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFA 171
Query: 413 SLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHS------LKT 466
LT L L +D ++L+ E +LK+ ++ L+ + + ++ ++ S L+
Sbjct: 172 GLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRD 231
Query: 467 LDLGDNLITEINNLSLNSLHQ---LAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQ 523
DL +E++ NSL + +++T+ ++ + K + ++S L L + N+++
Sbjct: 232 TDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMK-LLNQISGLLELEFSRNQLK 290
Query: 524 KVEAGTFDNNSNLVAIRLDGN 544
V G FD ++L I L N
Sbjct: 291 SVPDGIFDRLTSLQKIWLHTN 311
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 74/311 (23%), Positives = 125/311 (40%), Gaps = 66/311 (21%)
Query: 223 LRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGXXXXXXXXXXXXXXX 282
++ LDLSNN + R LQ L L
Sbjct: 54 VKSLDLSNNRITYISNSDLQRCVNLQALVL------------------------------ 83
Query: 283 XIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGL 342
+N IN + F+ L L LDLS N L+ ++++ F L
Sbjct: 84 ------------------TSNGINTIEEDSFSSLGSLEHLDLSYNYLSN--LSSSWFKPL 123
Query: 343 HRLVVLNIAYNKMNKL-DSSIFKDLYRLQVLHLEN-NQIESIHRNTFASLSNLHTLIMSN 400
L LN+ N L ++S+F L +LQ+L + N + I R FA L+ L L +
Sbjct: 124 SSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDA 183
Query: 401 NKLKRIESNSLDSLTALSVLSLDNNE----LEY-------IEENALKNSTSLQDFHLNGN 449
+ L+ E SL S+ +S L L + LE +E L++ T L FH +
Sbjct: 184 SDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRD-TDLDTFHFSEL 242
Query: 450 KLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKL 509
E +++ + + + + D + ++ L LN + L L + N + ++ G+F++L
Sbjct: 243 STGETNSLIKKF-TFRNVKITDESLFQVMKL-LNQISGLLELEFSRNQLKSVPDGIFDRL 300
Query: 510 SVLTILNLASN 520
+ L + L +N
Sbjct: 301 TSLQKIWLHTN 311
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 55/116 (47%), Gaps = 4/116 (3%)
Query: 451 LTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLS 510
L IP L ++K+LDL +N IT I+N L L L LT N I+ I + F L
Sbjct: 43 LNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLG 100
Query: 511 VLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIG--GLFPKLPNLVWLNI 564
L L+L+ N + + + F S+L + L GN +G LF L L L +
Sbjct: 101 SLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRV 156
Score = 38.9 bits (89), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 70/163 (42%), Gaps = 30/163 (18%)
Query: 391 SNLHTLIMSNNKLKRIESNSLDSL-----TALSVLSLDNNELEYIEENALKNSTSLQDFH 445
SN +L N + + S SL+S+ A+ L L NN + YI + L+ +LQ
Sbjct: 23 SNQASLSCDRNGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQ--- 79
Query: 446 LNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGV 505
L L N I I S +SL L L L+ N +SN+S
Sbjct: 80 --------------------ALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSW 119
Query: 506 FEKLSVLTILNLASNKIQKV-EAGTFDNNSNLVAIRLDGNYLT 547
F+ LS LT LNL N + + E F + + L +R+ GN T
Sbjct: 120 FKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRV-GNMDT 161
Score = 34.7 bits (78), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 844 NKTFNGLKELI-ILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLK 902
N +GL E + L L +NR+T I + +R NL+ L L N I I +F SL L+
Sbjct: 44 NSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLE 103
Query: 903 VLQLDHNRITSFA 915
L L +N +++ +
Sbjct: 104 HLDLSYNYLSNLS 116
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 62/131 (47%), Gaps = 14/131 (10%)
Query: 769 CPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKK 828
CP+ C+C + +++C + +P IP D L+L+ N+I + F
Sbjct: 6 CPSQCSC------DQTLVNCQNIRLAS-VPAGIPTDKQRLWLNNNQITKLEPGVFDHLVN 58
Query: 829 LQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNK-- 886
LQ L+ NS+ + I F+ L +L L L+DN L I F+ L++L +YL N
Sbjct: 59 LQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWD 118
Query: 887 -----IIYISN 892
I+Y+ N
Sbjct: 119 CECRDIMYLRN 129
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 53/102 (51%), Gaps = 4/102 (3%)
Query: 856 LRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSF- 914
L L++N++T++ F+ L NL++LY NK+ I F LT L L L+ N + S
Sbjct: 38 LWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIP 97
Query: 915 --AVWHLSSQIQSITLTSNPWSCDCDFTEKFRDYLQRSRSSV 954
A +L S + I L +NPW C+C R+++ S V
Sbjct: 98 RGAFDNLKS-LTHIYLYNNPWDCECRDIMYLRNWVADHTSIV 138
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 40/80 (50%)
Query: 370 QVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEY 429
Q L L NNQI + F L NL L ++NKL I + D LT L+ L L++N L+
Sbjct: 36 QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKS 95
Query: 430 IEENALKNSTSLQDFHLNGN 449
I A N SL +L N
Sbjct: 96 IPRGAFDNLKSLTHIYLYNN 115
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 43/76 (56%)
Query: 353 NKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLD 412
N++ KL+ +F L LQ L+ +N++ +I F L+ L L +++N LK I + D
Sbjct: 43 NQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFD 102
Query: 413 SLTALSVLSLDNNELE 428
+L +L+ + L NN +
Sbjct: 103 NLKSLTHIYLYNNPWD 118
Score = 43.5 bits (101), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 40/76 (52%)
Query: 469 LGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAG 528
L +N IT++ + L L L N ++ I GVF+KL+ LT L+L N ++ + G
Sbjct: 40 LNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRG 99
Query: 529 TFDNNSNLVAIRLDGN 544
FDN +L I L N
Sbjct: 100 AFDNLKSLTHIYLYNN 115
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 294 DLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYN 353
D + ++L NN I L PG+F+ L L L ++N+LT + F L +L L++ N
Sbjct: 34 DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA--IPTGVFDKLTQLTQLDLNDN 91
Query: 354 KMNKLDSSIFKDLYRLQVLHLENN 377
+ + F +L L ++L NN
Sbjct: 92 HLKSIPRGAFDNLKSLTHIYLYNN 115
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 420 LSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPK-VLRNLHSLKTLDLGDNLITEIN 478
L L+NN++ +E + +LQ + N NKLT IP V L L LDL DN + I
Sbjct: 38 LWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIP 97
Query: 479 NLSLNSLHQLAGLRLTEN 496
+ ++L L + L N
Sbjct: 98 RGAFDNLKSLTHIYLYNN 115
Score = 38.5 bits (88), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 491 LRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIG 550
L L N I+ + GVF+ L L L SNK+ + G FD + L + L+ N+L I
Sbjct: 38 LWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIP 97
Query: 551 -GLFPKLPNLV 560
G F L +L
Sbjct: 98 RGAFDNLKSLT 108
Score = 37.7 bits (86), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 29/44 (65%)
Query: 286 PELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNEL 329
P +F+ +L+++Y +N + + G+F+ LTQL LDL++N L
Sbjct: 50 PGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHL 93
Score = 36.2 bits (82), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Query: 396 LIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIP 455
L ++NN++ ++E D L L L ++N+L I T L LN N L IP
Sbjct: 38 LWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIP 97
Query: 456 K-VLRNLHSLKTLDLGDN 472
+ NL SL + L +N
Sbjct: 98 RGAFDNLKSLTHIYLYNN 115
Score = 35.8 bits (81), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 56/122 (45%), Gaps = 30/122 (24%)
Query: 575 ALIPADLQWLDIHGNQISEL-GNYFEIESQLRLTYFDASSNKLTELTGNAIPHSVENLFL 633
A IP D Q L ++ NQI++L F+ L+ YF+ SNKLT AIP V
Sbjct: 29 AGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFN--SNKLT-----AIPTGV----- 76
Query: 634 TNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHKNIPDFYIGENPFQC 693
F LT++DL N LK+I + A + K++ Y+ NP+ C
Sbjct: 77 ------------FDKLTQLTQLDLNDNHLKSIPRGAFD-----NLKSLTHIYLYNNPWDC 119
Query: 694 DC 695
+C
Sbjct: 120 EC 121
Score = 33.1 bits (74), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 28/76 (36%)
Query: 228 LSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGXXXXXXXXXXXXXXXXIPPE 287
L+NN L F L LQ+LY N LT + D IP
Sbjct: 40 LNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRG 99
Query: 288 LFNQSRDLKEVYLQNN 303
F+ + L +YL NN
Sbjct: 100 AFDNLKSLTHIYLYNN 115
Score = 33.1 bits (74), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 33/79 (41%), Gaps = 6/79 (7%)
Query: 177 NSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSL 236
N I L +F L +L L NKL+ + T F L LDL++N S+
Sbjct: 43 NQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKL------TQLTQLDLNDNHLKSI 96
Query: 237 PAEGFSRLSRLQELYLQGN 255
P F L L +YL N
Sbjct: 97 PRGAFDNLKSLTHIYLYNN 115
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 90/182 (49%), Gaps = 12/182 (6%)
Query: 386 TFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFH 445
T A L + TL N + IE + L L L L +N++ + LKN T + +
Sbjct: 42 TQADLDGIATLSAFNTGVTTIEG--IQYLNNLIGLELKDNQITDLTP--LKNLTKITELE 97
Query: 446 LNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGV 505
L+GN L + + L S+KTLDL IT++ L+ L L L L N I+NIS
Sbjct: 98 LSGNPLKNV-SAIAGLQSIKTLDLTSTQITDVTPLA--GLSNLQVLYLDLNQITNISP-- 152
Query: 506 FEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNIS 565
L+ L L++ +N++ + N S L +R D N ++DI L LPNL+ +++
Sbjct: 153 LAGLTNLQYLSIGNNQVNDLTP--LANLSKLTTLRADDNKISDISPLA-SLPNLIEVHLK 209
Query: 566 EN 567
+N
Sbjct: 210 DN 211
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 86/165 (52%), Gaps = 15/165 (9%)
Query: 300 LQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLD 359
L++N I L P LT++ L+LS N L N + +GL + L++ ++ D
Sbjct: 76 LKDNQITDLTP--LKNLTKITELELSGNPLK----NVSAIAGLQSIKTLDLTSTQIT--D 127
Query: 360 SSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSV 419
+ L LQVL+L+ NQI +I A L+NL L + NN++ + L +L+ L+
Sbjct: 128 VTPLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNNQVNDLT--PLANLSKLTT 183
Query: 420 LSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSL 464
L D+N++ I L + +L + HL N+++++ L NL +L
Sbjct: 184 LRADDNKISDISP--LASLPNLIEVHLKDNQISDVSP-LANLSNL 225
Score = 37.0 bits (84), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 88/186 (47%), Gaps = 38/186 (20%)
Query: 461 LHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASN 520
L++L L+L DN IT++ L +L ++ L L+ N + N+S L + L+L S
Sbjct: 68 LNNLIGLELKDNQITDLT--PLKNLTKITELELSGNPLKNVS--AIAGLQSIKTLDLTST 123
Query: 521 KIQKVE--AGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYALIP 578
+I V AG SNL + LD N +T+I L L NL
Sbjct: 124 QITDVTPLAGL----SNLQVLYLDLNQITNISPLA-GLTNL------------------- 159
Query: 579 ADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNA-IPHSVENLFLTNNL 637
Q+L I NQ+++L + +LT A NK+++++ A +P+ +E + L +N
Sbjct: 160 ---QYLSIGNNQVNDLTPLANLS---KLTTLRADDNKISDISPLASLPNLIE-VHLKDNQ 212
Query: 638 ISKVQP 643
IS V P
Sbjct: 213 ISDVSP 218
Score = 30.0 bits (66), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 849 GLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDH 908
GL+ + L L ++T++ L NL+ LYL N+I IS LT+L+ L + +
Sbjct: 111 GLQSIKTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIGN 166
Query: 909 NRI 911
N++
Sbjct: 167 NQV 169
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 50/104 (48%), Gaps = 26/104 (25%)
Query: 298 VYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNK 357
+YL +N I L PG+F+ LTQL LDL NN+LT
Sbjct: 43 LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV-------------------------- 76
Query: 358 LDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNN 401
L + +F L +L L L +NQ++SI R F +L +L + + NN
Sbjct: 77 LPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 120
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 42/77 (54%)
Query: 370 QVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEY 429
QVL+L +NQI + F L+ L L + NN+L + + D LT L+ LSL++N+L+
Sbjct: 41 QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS 100
Query: 430 IEENALKNSTSLQDFHL 446
I A N SL L
Sbjct: 101 IPRGAFDNLKSLTHIWL 117
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 53/104 (50%), Gaps = 2/104 (1%)
Query: 438 STSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENN 497
S S +G L +P + + + L L DN IT++ + L QL L L N
Sbjct: 16 SCSGTTVDCSGKSLASVPTGIPT--TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ 73
Query: 498 ISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRL 541
++ + GVF+KL+ LT L+L N+++ + G FDN +L I L
Sbjct: 74 LTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 117
Score = 47.0 bits (110), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 47/82 (57%)
Query: 347 VLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRI 406
VL + N++ KL+ +F L +L L L+NNQ+ + F L+ L L +++N+LK I
Sbjct: 42 VLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSI 101
Query: 407 ESNSLDSLTALSVLSLDNNELE 428
+ D+L +L+ + L NN +
Sbjct: 102 PRGAFDNLKSLTHIWLLNNPWD 123
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 491 LRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIG 550
L L +N I+ + GVF++L+ LT L+L +N++ + AG FD + L + L+ N L I
Sbjct: 43 LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIP 102
Query: 551 -GLFPKLPNL--VWL 562
G F L +L +WL
Sbjct: 103 RGAFDNLKSLTHIWL 117
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 63/172 (36%), Gaps = 59/172 (34%)
Query: 769 CPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKK 828
CP+ C+C +DCS G +P IP
Sbjct: 11 CPSQCSC------SGTTVDCS-GKSLASVPTGIPTTT----------------------- 40
Query: 829 LQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKII 888
Q+L+L + + + F+ L +L L LD+N+LT + F++L L +L L N++
Sbjct: 41 -QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLK 99
Query: 889 YISNRTF---LSLTHLKVLQLDHNRITSFAVWHLSSQIQSITLTSNPWSCDC 937
I F SLTH +W L +NPW C C
Sbjct: 100 SIPRGAFDNLKSLTH---------------IW----------LLNNPWDCAC 126
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 394 HTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTE 453
L + +N++ ++E D LT L+ L LDNN+L + T L LN N+L
Sbjct: 41 QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS 100
Query: 454 IPK-VLRNLHSL 464
IP+ NL SL
Sbjct: 101 IPRGAFDNLKSL 112
Score = 38.5 bits (88), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 514 ILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDI-GGLFPKLPNLVWLNISENLLE 570
+L L N+I K+E G FD + L + LD N LT + G+F KL L L++++N L+
Sbjct: 42 VLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLK 99
Score = 37.4 bits (85), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 28/44 (63%)
Query: 286 PELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNEL 329
P +F++ L + L NN + VL G+F+ LTQL L L++N+L
Sbjct: 55 PGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL 98
Score = 35.0 bits (79), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 52/126 (41%), Gaps = 20/126 (15%)
Query: 590 QISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMK 649
+I G+ + T D S L + IP + + L+L +N I+K++P F
Sbjct: 3 RIRARGSACPSQCSCSGTTVDCSGKSLASVP-TGIPTTTQVLYLYDNQITKLEPGVFDRL 61
Query: 650 PNLTRVDLVGNRLK----------------NINQTALRISPLPSHKNIPDF---YIGENP 690
LTR+DL N+L ++N L+ P + N+ ++ NP
Sbjct: 62 TQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNP 121
Query: 691 FQCDCN 696
+ C C+
Sbjct: 122 WDCACS 127
Score = 31.2 bits (69), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 23/44 (52%)
Query: 223 LRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALD 266
L LDL NN LPA F +L++L +L L N L + A D
Sbjct: 64 LTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFD 107
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 50/104 (48%), Gaps = 26/104 (25%)
Query: 298 VYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNK 357
+YL +N I L PG+F+ LTQL LDL NN+LT
Sbjct: 35 LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV-------------------------- 68
Query: 358 LDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNN 401
L + +F L +L L L +NQ++SI R F +L +L + + NN
Sbjct: 69 LPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 112
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 43/80 (53%)
Query: 370 QVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEY 429
QVL+L +NQI + F L+ L L + NN+L + + D LT L+ LSL++N+L+
Sbjct: 33 QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS 92
Query: 430 IEENALKNSTSLQDFHLNGN 449
I A N SL L N
Sbjct: 93 IPRGAFDNLKSLTHIWLLNN 112
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 53/104 (50%), Gaps = 2/104 (1%)
Query: 438 STSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENN 497
S S +G L +P + + + L L DN IT++ + L QL L L N
Sbjct: 8 SCSGTTVDCSGKSLASVPTGIPT--TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ 65
Query: 498 ISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRL 541
++ + GVF+KL+ LT L+L N+++ + G FDN +L I L
Sbjct: 66 LTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109
Score = 47.4 bits (111), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 47/82 (57%)
Query: 347 VLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRI 406
VL + N++ KL+ +F L +L L L+NNQ+ + F L+ L L +++N+LK I
Sbjct: 34 VLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSI 93
Query: 407 ESNSLDSLTALSVLSLDNNELE 428
+ D+L +L+ + L NN +
Sbjct: 94 PRGAFDNLKSLTHIWLLNNPWD 115
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 64/174 (36%), Gaps = 59/174 (33%)
Query: 767 MTCPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGR 826
M CP+ C+C +DCS G +P IP
Sbjct: 1 MACPSQCSC------SGTTVDCS-GKSLASVPTGIPTTT--------------------- 32
Query: 827 KKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNK 886
Q+L+L + + + F+ L +L L LD+N+LT + F++L L +L L N+
Sbjct: 33 ---QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89
Query: 887 IIYISNRTF---LSLTHLKVLQLDHNRITSFAVWHLSSQIQSITLTSNPWSCDC 937
+ I F SLTH +W L +NPW C C
Sbjct: 90 LKSIPRGAFDNLKSLTH---------------IW----------LLNNPWDCAC 118
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 491 LRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIG 550
L L +N I+ + GVF++L+ LT L+L +N++ + AG FD + L + L+ N L I
Sbjct: 35 LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIP 94
Query: 551 -GLFPKLPNL--VWL 562
G F L +L +WL
Sbjct: 95 RGAFDNLKSLTHIWL 109
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 394 HTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTE 453
L + +N++ ++E D LT L+ L LDNN+L + T L LN N+L
Sbjct: 33 QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS 92
Query: 454 IPK-VLRNLHSL 464
IP+ NL SL
Sbjct: 93 IPRGAFDNLKSL 104
Score = 38.5 bits (88), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 514 ILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDI-GGLFPKLPNLVWLNISENLLE 570
+L L N+I K+E G FD + L + LD N LT + G+F KL L L++++N L+
Sbjct: 34 VLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLK 91
Score = 37.4 bits (85), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 49/113 (43%), Gaps = 27/113 (23%)
Query: 217 ARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGXXXXXXXXX 276
++C + +D S S S+P G + Q LYL N +T L
Sbjct: 5 SQCSCSGTTVDCSGKSLASVPT-GIPTTT--QVLYLYDNQITKLE--------------- 46
Query: 277 XXXXXXXIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNEL 329
P +F++ L + L NN + VL G+F+ LTQL L L++N+L
Sbjct: 47 ---------PGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL 90
Score = 34.3 bits (77), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 47/109 (43%), Gaps = 20/109 (18%)
Query: 607 TYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLK--- 663
T D S L + IP + + L+L +N I+K++P F LTR+DL N+L
Sbjct: 12 TTVDCSGKSLASVP-TGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLP 70
Query: 664 -------------NINQTALRISPLPSHKNIPDF---YIGENPFQCDCN 696
++N L+ P + N+ ++ NP+ C C+
Sbjct: 71 AGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119
Score = 31.2 bits (69), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 23/44 (52%)
Query: 223 LRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALD 266
L LDL NN LPA F +L++L +L L N L + A D
Sbjct: 56 LTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFD 99
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 60/132 (45%), Gaps = 14/132 (10%)
Query: 767 MTCPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGR 826
M CP+ C+C +DCS G +P IP LYL NRI + F
Sbjct: 1 MACPSQCSC------SGTTVDCS-GKSLASVPTGIPTTTQVLYLYDNRITKLEPGVFDRL 53
Query: 827 KKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNK 886
+L L L+++ + + F+ L +L L L+DN+L I F+ L +L ++L N
Sbjct: 54 TQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLRSLTHIWLLNNP 113
Query: 887 -------IIYIS 891
I+Y+S
Sbjct: 114 WDCACSDILYLS 125
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 50/104 (48%), Gaps = 26/104 (25%)
Query: 298 VYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNK 357
+YL +N I L PG+F+ LTQL LDL NN+LT
Sbjct: 35 LYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTV-------------------------- 68
Query: 358 LDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNN 401
L + +F L +L L L +NQ++SI R F +L +L + + NN
Sbjct: 69 LPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLRSLTHIWLLNN 112
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 52/98 (53%), Gaps = 2/98 (2%)
Query: 447 NGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVF 506
+G L +P + + + L L DN IT++ + L QL L L N ++ + GVF
Sbjct: 17 SGKSLASVPTGIPT--TTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVF 74
Query: 507 EKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGN 544
+KL+ LT L+L N+++ + G FDN +L I L N
Sbjct: 75 DKLTQLTQLSLNDNQLKSIPRGAFDNLRSLTHIWLLNN 112
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 43/80 (53%)
Query: 370 QVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEY 429
QVL+L +N+I + F L+ L L + NN+L + + D LT L+ LSL++N+L+
Sbjct: 33 QVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS 92
Query: 430 IEENALKNSTSLQDFHLNGN 449
I A N SL L N
Sbjct: 93 IPRGAFDNLRSLTHIWLLNN 112
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 47/82 (57%)
Query: 347 VLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRI 406
VL + N++ KL+ +F L +L L L+NNQ+ + F L+ L L +++N+LK I
Sbjct: 34 VLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSI 93
Query: 407 ESNSLDSLTALSVLSLDNNELE 428
+ D+L +L+ + L NN +
Sbjct: 94 PRGAFDNLRSLTHIWLLNNPWD 115
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 394 HTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTE 453
L + +N++ ++E D LT L+ L LDNN+L + T L LN N+L
Sbjct: 33 QVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS 92
Query: 454 IPK-VLRNLHSL 464
IP+ NL SL
Sbjct: 93 IPRGAFDNLRSL 104
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 491 LRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIG 550
L L +N I+ + GVF++L+ LT L+L +N++ + AG FD + L + L+ N L I
Sbjct: 35 LYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIP 94
Query: 551 -GLFPKLPNL--VWL 562
G F L +L +WL
Sbjct: 95 RGAFDNLRSLTHIWL 109
Score = 38.9 bits (89), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 514 ILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDI-GGLFPKLPNLVWLNISENLLE 570
+L L N+I K+E G FD + L + LD N LT + G+F KL L L++++N L+
Sbjct: 34 VLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLK 91
Score = 37.4 bits (85), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 49/113 (43%), Gaps = 27/113 (23%)
Query: 217 ARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGXXXXXXXXX 276
++C + +D S S S+P G + Q LYL N +T L
Sbjct: 5 SQCSCSGTTVDCSGKSLASVPT-GIPTTT--QVLYLYDNRITKLE--------------- 46
Query: 277 XXXXXXXIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNEL 329
P +F++ L + L NN + VL G+F+ LTQL L L++N+L
Sbjct: 47 ---------PGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL 90
Score = 34.3 bits (77), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 47/109 (43%), Gaps = 20/109 (18%)
Query: 607 TYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLK--- 663
T D S L + IP + + L+L +N I+K++P F LTR+DL N+L
Sbjct: 12 TTVDCSGKSLASVP-TGIPTTTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLP 70
Query: 664 -------------NINQTALRISPLPSHKNIPDF---YIGENPFQCDCN 696
++N L+ P + N+ ++ NP+ C C+
Sbjct: 71 AGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLRSLTHIWLLNNPWDCACS 119
Score = 31.2 bits (69), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 23/44 (52%)
Query: 223 LRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALD 266
L LDL NN LPA F +L++L +L L N L + A D
Sbjct: 56 LTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFD 99
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 55/106 (51%), Gaps = 2/106 (1%)
Query: 440 SLQDFHLNGNKLTEIPK-VLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNI 498
L+ F +LT IP +L ++ +L L+L N I E+ + + L L + N +
Sbjct: 124 GLKRFRFTTRRLTHIPANLLTDMRNLSHLELRAN-IEEMPSHLFDDLENLESIEFGSNKL 182
Query: 499 SNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGN 544
+ +G+F K+ L LNLASN+++ V G FD ++L I L N
Sbjct: 183 RQMPRGIFGKMPKLKQLNLASNQLKSVPDGIFDRLTSLQKIWLHTN 228
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 52/101 (51%), Gaps = 2/101 (1%)
Query: 471 DNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTF 530
DNL I L+ LH L R T +++I + + L+ L L +N I+++ + F
Sbjct: 108 DNLGMNITRQHLDRLHGLKRFRFTTRRLTHIPANLLTDMRNLSHLELRAN-IEEMPSHLF 166
Query: 531 DNNSNLVAIRLDGNYLTDIG-GLFPKLPNLVWLNISENLLE 570
D+ NL +I N L + G+F K+P L LN++ N L+
Sbjct: 167 DDLENLESIEFGSNKLRQMPRGIFGKMPKLKQLNLASNQLK 207
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 60/128 (46%), Gaps = 3/128 (2%)
Query: 395 TLIMSNNKLK-RIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTE 453
TLI ++ L I LD L L L +I N L + +L L N + E
Sbjct: 102 TLIFESDNLGMNITRQHLDRLHGLKRFRFTTRRLTHIPANLLTDMRNLSHLELRAN-IEE 160
Query: 454 IPK-VLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVL 512
+P + +L +L++++ G N + ++ + +L L L N + ++ G+F++L+ L
Sbjct: 161 MPSHLFDDLENLESIEFGSNKLRQMPRGIFGKMPKLKQLNLASNQLKSVPDGIFDRLTSL 220
Query: 513 TILNLASN 520
+ L +N
Sbjct: 221 QKIWLHTN 228
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 51/108 (47%), Gaps = 1/108 (0%)
Query: 342 LHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNN 401
LH L ++ + +++ D+ L L L N IE + + F L NL ++ +N
Sbjct: 122 LHGLKRFRFTTRRLTHIPANLLTDMRNLSHLELRAN-IEEMPSHLFDDLENLESIEFGSN 180
Query: 402 KLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGN 449
KL+++ + L L+L +N+L+ + + TSLQ L+ N
Sbjct: 181 KLRQMPRGIFGKMPKLKQLNLASNQLKSVPDGIFDRLTSLQKIWLHTN 228
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 6/89 (6%)
Query: 863 LTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSF--AVWHLS 920
+ E+ + F+ LENL + NK+ + F + LK L L N++ S ++
Sbjct: 158 IEEMPSHLFDDLENLESIEFGSNKLRQMPRGIFGKMPKLKQLNLASNQLKSVPDGIFDRL 217
Query: 921 SQIQSITLTSNPWSCDCDFTEKFRDYLQR 949
+ +Q I L +NPW C C DYL R
Sbjct: 218 TSLQKIWLHTNPWDCSCPRI----DYLSR 242
Score = 38.9 bits (89), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 49/109 (44%), Gaps = 4/109 (3%)
Query: 458 LRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNL 517
L LH LK +T I L + L+ L L NI + +F+ L L +
Sbjct: 119 LDRLHGLKRFRFTTRRLTHIPANLLTDMRNLSHLEL-RANIEEMPSHLFDDLENLESIEF 177
Query: 518 ASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDI-GGLFPKLPNL--VWLN 563
SNK++++ G F L + L N L + G+F +L +L +WL+
Sbjct: 178 GSNKLRQMPRGIFGKMPKLKQLNLASNQLKSVPDGIFDRLTSLQKIWLH 226
Score = 38.5 bits (88), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 334 VNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNL 393
+ A + + L L + N + ++ S +F DL L+ + +N++ + R F + L
Sbjct: 138 IPANLLTDMRNLSHLELRAN-IEEMPSHLFDDLENLESIEFGSNKLRQMPRGIFGKMPKL 196
Query: 394 HTLIMSNNKLKRIESNSLDSLTALSVLSLDNN 425
L +++N+LK + D LT+L + L N
Sbjct: 197 KQLNLASNQLKSVPDGIFDRLTSLQKIWLHTN 228
Score = 35.0 bits (79), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 4/90 (4%)
Query: 314 NVLTQLIVLDLSNNELTE--EWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQV 371
N+LT + +LS+ EL E + + F L L + NK+ ++ IF + +L+
Sbjct: 141 NLLTDM--RNLSHLELRANIEEMPSHLFDDLENLESIEFGSNKLRQMPRGIFGKMPKLKQ 198
Query: 372 LHLENNQIESIHRNTFASLSNLHTLIMSNN 401
L+L +NQ++S+ F L++L + + N
Sbjct: 199 LNLASNQLKSVPDGIFDRLTSLQKIWLHTN 228
Score = 33.9 bits (76), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
Query: 179 IWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPA 238
I +P +F L++L + NKL + F L+ L+L++N S+P
Sbjct: 158 IEEMPSHLFDDLENLESIEFGSNKLRQMPRGIFGKMP------KLKQLNLASNQLKSVPD 211
Query: 239 EGFSRLSRLQELYLQGN 255
F RL+ LQ+++L N
Sbjct: 212 GIFDRLTSLQKIWLHTN 228
Score = 30.0 bits (66), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 41/106 (38%), Gaps = 1/106 (0%)
Query: 222 NLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGXXXXXXXXXXXXXX 281
L+ + +PA + + L L L+ NI + H D
Sbjct: 124 GLKRFRFTTRRLTHIPANLLTDMRNLSHLELRANI-EEMPSHLFDDLENLESIEFGSNKL 182
Query: 282 XXIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNN 327
+P +F + LK++ L +N + + GIF+ LT L + L N
Sbjct: 183 RQMPRGIFGKMPKLKQLNLASNQLKSVPDGIFDRLTSLQKIWLHTN 228
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 90/176 (51%), Gaps = 15/176 (8%)
Query: 300 LQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLD 359
L++N I LAP LT++ L+LS N L N + +GL + L++ ++ D
Sbjct: 70 LKDNQITDLAP--LKNLTKITELELSGNPLK----NVSAIAGLQSIKTLDLTSTQIT--D 121
Query: 360 SSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSV 419
+ L LQVL+L+ NQI +I A L+NL L + N ++ + L +L+ L+
Sbjct: 122 VTPLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLT--PLANLSKLTT 177
Query: 420 LSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLIT 475
L D+N++ I L + +L + HL N+++++ L N +L + L + IT
Sbjct: 178 LKADDNKISDISP--LASLPNLIEVHLKNNQISDV-SPLANTSNLFIVTLTNQTIT 230
Score = 47.4 bits (111), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 93/206 (45%), Gaps = 12/206 (5%)
Query: 362 IFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLS 421
IF D + + + T A L + TL + IE + L L L
Sbjct: 12 IFPDPALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLE 69
Query: 422 LDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLS 481
L +N++ + LKN T + + L+GN L + + L S+KTLDL IT++ L+
Sbjct: 70 LKDNQITDLAP--LKNLTKITELELSGNPLKNV-SAIAGLQSIKTLDLTSTQITDVTPLA 126
Query: 482 LNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRL 541
L L L L N I+NIS L+ L L++ + ++ + N S L ++
Sbjct: 127 --GLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKA 180
Query: 542 DGNYLTDIGGLFPKLPNLVWLNISEN 567
D N ++DI L LPNL+ +++ N
Sbjct: 181 DDNKISDISPLA-SLPNLIEVHLKNN 205
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 65/234 (27%), Positives = 107/234 (45%), Gaps = 48/234 (20%)
Query: 416 ALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLIT 475
A+ + + +N + + + L T+L F G +T I V + L++L L+L DN IT
Sbjct: 21 AIKIAAGKSNVTDTVTQADLDGITTLSAF---GTGVTTIEGV-QYLNNLIGLELKDNQIT 76
Query: 476 EINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVE--AGTFDNN 533
++ L +L ++ L L+ N + N+S L + L+L S +I V AG
Sbjct: 77 DL--APLKNLTKITELELSGNPLKNVS--AIAGLQSIKTLDLTSTQITDVTPLAGL---- 128
Query: 534 SNLVAIRLDGNYLTDI---GGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQ 590
SNL + LD N +T+I GL +LQ+L I Q
Sbjct: 129 SNLQVLYLDLNQITNISPLAGL--------------------------TNLQYLSIGNAQ 162
Query: 591 ISELGNYFEIESQLRLTYFDASSNKLTELTGNA-IPHSVENLFLTNNLISKVQP 643
+S+L + +LT A NK+++++ A +P+ +E + L NN IS V P
Sbjct: 163 VSDLTPLANLS---KLTTLKADDNKISDISPLASLPNLIE-VHLKNNQISDVSP 212
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 87/180 (48%), Gaps = 19/180 (10%)
Query: 338 TFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTF--ASLSNLHT 395
F +L LN+AYN++ ++ ++ +++ L +N+++ I N F S+S
Sbjct: 348 AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIP-NIFDAKSVSVXSA 406
Query: 396 LIMSNNKLKRIESNSLDSLTA-------LSVLSLDNNELEYIEENALKNSTSLQDFHLNG 448
+ S N++ ++ + D L +S ++L NN++ + + L +L G
Sbjct: 407 IDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLXG 466
Query: 449 NKLTEIPK--------VLRNLHSLKTLDLGDNLITEI-NNLSLNSLHQLAGLRLTENNIS 499
N LTEIPK +N + L ++DL N +T++ ++ +L L G+ L+ N+ S
Sbjct: 467 NXLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFS 526
Score = 39.3 bits (90), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 79/375 (21%), Positives = 146/375 (38%), Gaps = 70/375 (18%)
Query: 324 LSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLD-SSIFKDLYRLQVLHLENNQIESI 382
+S +L ++W A ++ ++ I YN + + + +L L NQ+E
Sbjct: 286 ISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKXKKLGXLECLYNQLEG- 344
Query: 383 HRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQ 442
F S L +L ++ N++ I +N + LS +N+L+YI
Sbjct: 345 KLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIP----------- 393
Query: 443 DFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNIS 502
N+ K++ + + + S N + + G N +
Sbjct: 394 -----------------NIFDAKSVSVXSAI-----DFSYNEIGSVDG-----KNFDPLD 426
Query: 503 KGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWL 562
F+ ++V +I NL++N+I K F S L +I L GN LT+I P
Sbjct: 427 PTPFKGINVSSI-NLSNNQISKFPKELFSTGSPLSSINLXGNXLTEI-------PKNSLK 478
Query: 563 NISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGN 622
+ +EN Y L DL++ N++++L + F + L D S N ++
Sbjct: 479 DENENFKN--TYLLTSIDLRF-----NKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQ 531
Query: 623 AIPHSVENLF-------LTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPL 675
+ S F N + P + P+LT++ + N ++ +N+ +I+P
Sbjct: 532 PLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNE---KITP- 587
Query: 676 PSHKNIPDFYIGENP 690
NI I +NP
Sbjct: 588 ----NISVLDIKDNP 598
Score = 37.7 bits (86), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 194 SYLNLTQNKLSNVATFSFSNYD-TARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYL 252
S ++ + N++ +V +F D T GIN+ ++LSNN P E FS S L + L
Sbjct: 405 SAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINL 464
Query: 253 QGNILTFLADHAL 265
GN LT + ++L
Sbjct: 465 XGNXLTEIPKNSL 477
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 46.6 bits (109), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 77/275 (28%), Positives = 126/275 (45%), Gaps = 54/275 (19%)
Query: 316 LTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLE 375
LT L L+L+ N++T+ + S L +L L I NK+ D S ++L L+ L+L
Sbjct: 65 LTNLEYLNLNGNQITD----ISPLSNLVKLTNLYIGTNKIT--DISALQNLTNLRELYLN 118
Query: 376 NNQIESI------------------HRNTFASLSN---LHTLIMSNNKLKRIESNSLDSL 414
+ I I + + + LSN L+ L ++ +K+K + + +L
Sbjct: 119 EDNISDISPLANLTKXYSLNLGANHNLSDLSPLSNXTGLNYLTVTESKVKDVTP--IANL 176
Query: 415 TALSVLSLDNNELEYIEENA--------------------LKNSTSLQDFHLNGNKLTEI 454
T L LSL+ N++E I A + N T L + NK+T++
Sbjct: 177 TDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANXTRLNSLKIGNNKITDL 236
Query: 455 PKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTI 514
L NL L L++G N I++IN ++ L +L L + N IS+IS V LS L
Sbjct: 237 SP-LANLSQLTWLEIGTNQISDIN--AVKDLTKLKXLNVGSNQISDIS--VLNNLSQLNS 291
Query: 515 LNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDI 549
L L +N++ + +NL + L N++TDI
Sbjct: 292 LFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHITDI 326
Score = 39.7 bits (91), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 62/117 (52%), Gaps = 9/117 (7%)
Query: 290 NQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLN 349
N +R L + + NN I L+P L+QL L++ N++++ +NA L +L LN
Sbjct: 219 NXTR-LNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD--INA--VKDLTKLKXLN 271
Query: 350 IAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRI 406
+ N+++ D S+ +L +L L L NNQ+ + L+NL TL +S N + I
Sbjct: 272 VGSNQIS--DISVLNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHITDI 326
Score = 38.9 bits (89), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 73/267 (27%), Positives = 116/267 (43%), Gaps = 46/267 (17%)
Query: 439 TSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNI 498
T+L+ +LNGN++T+I L NL L L +G N IT+I+ +L +L L L L E+NI
Sbjct: 66 TNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS--ALQNLTNLRELYLNEDNI 122
Query: 499 SNISK------------GVFEKLSVL------TILNLASNKIQKVEAGT-FDNNSNLVAI 539
S+IS G LS L T LN + KV+ T N ++L ++
Sbjct: 123 SDISPLANLTKXYSLNLGANHNLSDLSPLSNXTGLNYLTVTESKVKDVTPIANLTDLYSL 182
Query: 540 RLDGNYLTDIGGL------------------FPKLPNLVWLN---ISENLLEWFDYALIP 578
L+ N + DI L + N LN I N +
Sbjct: 183 SLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANXTRLNSLKIGNNKITDLSPLANL 242
Query: 579 ADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPHSVENLFLTNNLI 638
+ L WL+I NQIS++ ++ +L + SN++++++ + +LFL NN +
Sbjct: 243 SQLTWLEIGTNQISDIN---AVKDLTKLKXLNVGSNQISDISVLNNLSQLNSLFLNNNQL 299
Query: 639 SKVQPYTFFMKPNLTRVDLVGNRLKNI 665
NLT + L N + +I
Sbjct: 300 GNEDXEVIGGLTNLTTLFLSQNHITDI 326
Score = 33.9 bits (76), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 62/128 (48%), Gaps = 10/128 (7%)
Query: 344 RLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKL 403
RL L I NK+ L S +L +L L + NQI I N L+ L L + +N++
Sbjct: 222 RLNSLKIGNNKITDL--SPLANLSQLTWLEIGTNQISDI--NAVKDLTKLKXLNVGSNQI 277
Query: 404 KRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHS 463
I L++L+ L+ L L+NN+L + + T+L L+ N +T+I R L S
Sbjct: 278 SDISV--LNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHITDI----RPLAS 331
Query: 464 LKTLDLGD 471
L D D
Sbjct: 332 LSKXDSAD 339
Score = 30.0 bits (66), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 6/104 (5%)
Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
T+L + G ++ + ++ L+ L LN + + I + L +L L + N++T+
Sbjct: 47 TKLVVAGEKVASIQGIEYL--TNLEYLNLNGNQITDI--SPLSNLVKLTNLYIGTNKITD 102
Query: 866 IRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHN 909
I + L NLRELYL + I IS L+ + L +HN
Sbjct: 103 ISA--LQNLTNLRELYLNEDNISDISPLANLTKXYSLNLGANHN 144
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 46.6 bits (109), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 113/424 (26%), Positives = 172/424 (40%), Gaps = 60/424 (14%)
Query: 180 WTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDS-LPA 238
W L D L +L ++ NK+S + D +RC +NL LD+S+N+F + +P
Sbjct: 171 WVLSDGC----GELKHLAISGNKIS-------GDVDVSRC-VNLEFLDVSSNNFSTGIPF 218
Query: 239 EGFSRLSRLQELYLQGNILTFLADHALDGXXXXXXXXXXXXXXXXIPPELFNQSRDLKEV 298
G S LQ L + GN L+ A+ + +LK +
Sbjct: 219 LG--DCSALQHLDISGNKLSGDFSRAI------------------------STCTELKLL 252
Query: 299 YLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKL 358
+ +N P + L L L L+ N+ T E + + L L+++ N
Sbjct: 253 NISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLS-GACDTLTGLDLSGNHFYGA 309
Query: 359 DSSIFKDLYRLQVLHLENNQIES-IHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTAL 417
F L+ L L +N + +T + L L +S N+ SL +L+A
Sbjct: 310 VPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSA- 368
Query: 418 SVLSLD---NNELEYIEENALKN-STSLQDFHLNGNKLT-EIPKVLRNLHSLKTLDLGDN 472
S+L+LD NN I N +N +LQ+ +L N T +IP L N L +L L N
Sbjct: 369 SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFN 428
Query: 473 LITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDN 532
++ SL SL +L L+L N + + L L L N + N
Sbjct: 429 YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSN 488
Query: 533 NSNLVAIRLDGNYLT-DIGGLFPKLPNLVWLNISENLLEWFDYALIPADLQ------WLD 585
+NL I L N LT +I +L NL L +S N IPA+L WLD
Sbjct: 489 CTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFS----GNIPAELGDCRSLIWLD 544
Query: 586 IHGN 589
++ N
Sbjct: 545 LNTN 548
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 116/460 (25%), Positives = 173/460 (37%), Gaps = 66/460 (14%)
Query: 189 PLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQ 248
PL+SL YL+L +NK T ++ + C L LDLS N F F S L+
Sbjct: 267 PLKSLQYLSLAENKF----TGEIPDFLSGACDT-LTGLDLSGNHFYGAVPPFFGSCSLLE 321
Query: 249 ELYLQGNILT--FLADHALDGXXXXXXXXXXXXXXXXIPPELFNQSRDLKEVYLQNNSIN 306
L L N + D L +P L N S L + L +N+ +
Sbjct: 322 SLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFS 381
Query: 307 --VLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFK 364
+L N L L L NN T + T S LV L++++N ++ S
Sbjct: 382 GPILPNLCQNPKNTLQELYLQNNGFTGKI--PPTLSNCSELVSLHLSFNYLSGTIPSSLG 439
Query: 365 DLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDN 424
L +L+ L L N +E + L TLI+ N L + L + T L+ +SL N
Sbjct: 440 SLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSN 499
Query: 425 NELEYIEENALKNSTSLQDFHLNGNKLT-EIPKVLRNLHSLKTLDLGDNLIT-------- 475
N L + +L L+ N + IP L + SL LDL NL
Sbjct: 500 NRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMF 559
Query: 476 -EINNLSLNSLHQLAGLRLTENNISNISKGV-------------FEKLSVLTILNLASNK 521
+ ++ N + + + + + G +LS N+ S
Sbjct: 560 KQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRV 619
Query: 522 IQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPK----LPNLVWLNISENLLEWFDYALI 577
+ TFDNN +++ + + N L+ G PK +P L LN+ N
Sbjct: 620 YGGHTSPTFDNNGSMMFLDMSYNMLS---GYIPKEIGSMPYLFILNLGHN---------- 666
Query: 578 PADLQWLDIHGNQISELGNYFEIESQLR-LTYFDASSNKL 616
DI G+ E+G+ LR L D SSNKL
Sbjct: 667 -------DISGSIPDEVGD-------LRGLNILDLSSNKL 692
Score = 36.2 bits (82), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 89/227 (39%), Gaps = 44/227 (19%)
Query: 222 NLRVLDLSNNSFDS-LPAEGFSRLSRLQELYLQGNILTFLADHALDGXXXXXXXXXXXXX 280
NL +L LSNNSF +PAE L L L N+
Sbjct: 515 NLAILKLSNNSFSGNIPAE-LGDCRSLIWLDLNTNLFN---------------------- 551
Query: 281 XXXIPPELFNQSRDL--------KEVYLQNNSINVLAPGIFNVLT-QLIVLDLSNNELTE 331
IP +F QS + + VY++N+ + G N+L Q I + N T
Sbjct: 552 -GTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTR 610
Query: 332 EWVN----------AATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIES 381
N + TF ++ L+++YN ++ + L +L+L +N I
Sbjct: 611 NPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISG 670
Query: 382 IHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELE 428
+ L L+ L +S+NKL ++ +LT L+ + L NN L
Sbjct: 671 SIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLS 717
Score = 33.9 bits (76), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 63/232 (27%), Positives = 99/232 (42%), Gaps = 20/232 (8%)
Query: 299 YLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMN-- 356
+L N+ IN G F L LDLS N L+ + L LN++ N ++
Sbjct: 83 FLSNSHINGSVSG-FKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFP 141
Query: 357 -KLDSSIFKDLYRLQVLHLENNQIESIHRNTFA---SLSNLHTLIMSNNKLKR-IESNSL 411
K+ + L L+VL L N I + + L L +S NK+ ++ +
Sbjct: 142 GKVSGGL--KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRC 199
Query: 412 DSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLT-EIPKVLRNLHSLKTLDLG 470
+L L V S NN I L + ++LQ ++GNKL+ + + + LK L++
Sbjct: 200 VNLEFLDVSS--NNFSTGIP--FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNIS 255
Query: 471 DN-LITEINNLSLNSLHQLAGLRLTENNISN-ISKGVFEKLSVLTILNLASN 520
N + I L L SL L+ L EN + I + LT L+L+ N
Sbjct: 256 SNQFVGPIPPLPLKSLQYLS---LAENKFTGEIPDFLSGACDTLTGLDLSGN 304
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 113/424 (26%), Positives = 172/424 (40%), Gaps = 60/424 (14%)
Query: 180 WTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDS-LPA 238
W L D L +L ++ NK+S + D +RC +NL LD+S+N+F + +P
Sbjct: 168 WVLSDGC----GELKHLAISGNKIS-------GDVDVSRC-VNLEFLDVSSNNFSTGIPF 215
Query: 239 EGFSRLSRLQELYLQGNILTFLADHALDGXXXXXXXXXXXXXXXXIPPELFNQSRDLKEV 298
G S LQ L + GN L+ A+ + +LK +
Sbjct: 216 LG--DCSALQHLDISGNKLSGDFSRAI------------------------STCTELKLL 249
Query: 299 YLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKL 358
+ +N P + L L L L+ N+ T E + + L L+++ N
Sbjct: 250 NISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLS-GACDTLTGLDLSGNHFYGA 306
Query: 359 DSSIFKDLYRLQVLHLENNQIES-IHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTAL 417
F L+ L L +N + +T + L L +S N+ SL +L+A
Sbjct: 307 VPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSA- 365
Query: 418 SVLSLD---NNELEYIEENALKN-STSLQDFHLNGNKLT-EIPKVLRNLHSLKTLDLGDN 472
S+L+LD NN I N +N +LQ+ +L N T +IP L N L +L L N
Sbjct: 366 SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFN 425
Query: 473 LITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDN 532
++ SL SL +L L+L N + + L L L N + N
Sbjct: 426 YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSN 485
Query: 533 NSNLVAIRLDGNYLT-DIGGLFPKLPNLVWLNISENLLEWFDYALIPADLQ------WLD 585
+NL I L N LT +I +L NL L +S N IPA+L WLD
Sbjct: 486 CTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFS----GNIPAELGDCRSLIWLD 541
Query: 586 IHGN 589
++ N
Sbjct: 542 LNTN 545
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 116/460 (25%), Positives = 173/460 (37%), Gaps = 66/460 (14%)
Query: 189 PLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQ 248
PL+SL YL+L +NK T ++ + C L LDLS N F F S L+
Sbjct: 264 PLKSLQYLSLAENKF----TGEIPDFLSGACDT-LTGLDLSGNHFYGAVPPFFGSCSLLE 318
Query: 249 ELYLQGNILT--FLADHALDGXXXXXXXXXXXXXXXXIPPELFNQSRDLKEVYLQNNSIN 306
L L N + D L +P L N S L + L +N+ +
Sbjct: 319 SLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFS 378
Query: 307 --VLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFK 364
+L N L L L NN T + T S LV L++++N ++ S
Sbjct: 379 GPILPNLCQNPKNTLQELYLQNNGFTGKI--PPTLSNCSELVSLHLSFNYLSGTIPSSLG 436
Query: 365 DLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDN 424
L +L+ L L N +E + L TLI+ N L + L + T L+ +SL N
Sbjct: 437 SLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSN 496
Query: 425 NELEYIEENALKNSTSLQDFHLNGNKLT-EIPKVLRNLHSLKTLDLGDNLIT-------- 475
N L + +L L+ N + IP L + SL LDL NL
Sbjct: 497 NRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMF 556
Query: 476 -EINNLSLNSLHQLAGLRLTENNISNISKGV-------------FEKLSVLTILNLASNK 521
+ ++ N + + + + + G +LS N+ S
Sbjct: 557 KQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRV 616
Query: 522 IQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPK----LPNLVWLNISENLLEWFDYALI 577
+ TFDNN +++ + + N L+ G PK +P L LN+ N
Sbjct: 617 YGGHTSPTFDNNGSMMFLDMSYNMLS---GYIPKEIGSMPYLFILNLGHN---------- 663
Query: 578 PADLQWLDIHGNQISELGNYFEIESQLR-LTYFDASSNKL 616
DI G+ E+G+ LR L D SSNKL
Sbjct: 664 -------DISGSIPDEVGD-------LRGLNILDLSSNKL 689
Score = 36.2 bits (82), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 89/227 (39%), Gaps = 44/227 (19%)
Query: 222 NLRVLDLSNNSFDS-LPAEGFSRLSRLQELYLQGNILTFLADHALDGXXXXXXXXXXXXX 280
NL +L LSNNSF +PAE L L L N+
Sbjct: 512 NLAILKLSNNSFSGNIPAE-LGDCRSLIWLDLNTNLFN---------------------- 548
Query: 281 XXXIPPELFNQSRDL--------KEVYLQNNSINVLAPGIFNVLT-QLIVLDLSNNELTE 331
IP +F QS + + VY++N+ + G N+L Q I + N T
Sbjct: 549 -GTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTR 607
Query: 332 EWVN----------AATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIES 381
N + TF ++ L+++YN ++ + L +L+L +N I
Sbjct: 608 NPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISG 667
Query: 382 IHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELE 428
+ L L+ L +S+NKL ++ +LT L+ + L NN L
Sbjct: 668 SIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLS 714
Score = 33.5 bits (75), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 63/234 (26%), Positives = 99/234 (42%), Gaps = 24/234 (10%)
Query: 299 YLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMN-- 356
+L N+ IN G F L LDLS N L+ + L LN++ N ++
Sbjct: 80 FLSNSHINGSVSG-FKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFP 138
Query: 357 -KLDSSIFKDLYRLQVLHLENNQIESIHRNTFA---SLSNLHTLIMSNNKLKRIESNSLD 412
K+ + L L+VL L N I + + L L +S NK+ S +D
Sbjct: 139 GKVSGGL--KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKI----SGDVD 192
Query: 413 SLTALSVLSLD---NNELEYIEENALKNSTSLQDFHLNGNKLT-EIPKVLRNLHSLKTLD 468
+++ LD NN I L + ++LQ ++GNKL+ + + + LK L+
Sbjct: 193 VSRCVNLEFLDVSSNNFSTGIP--FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLN 250
Query: 469 LGDN-LITEINNLSLNSLHQLAGLRLTENNISN-ISKGVFEKLSVLTILNLASN 520
+ N + I L L SL L+ L EN + I + LT L+L+ N
Sbjct: 251 ISSNQFVGPIPPLPLKSLQYLS---LAENKFTGEIPDFLSGACDTLTGLDLSGN 301
>pdb|3UB4|A Chain A, S180l Variant Of Tir Domain Of MalTIRAP
Length = 146
Score = 46.2 bits (108), Expect = 1e-04, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 55/112 (49%), Gaps = 2/112 (1%)
Query: 1083 KLFDAFVSYSSKDEAFVAEELAPILENGDPAYKLCLHYREFPVGGYIGDTIVQAVESSRR 1142
K +D V +S +D A++L LE + + L R+ GG I + QA+ SS
Sbjct: 9 KDYDVCVCHSEED-LVAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHC 67
Query: 1143 TIMVLSENFIKSEWCRYEFKSAHHQVLRGKKRLIVILLGEVPQKDLDPDIRL 1194
+++++ F++ WC+Y+ A + + I +LLG + + P++R
Sbjct: 68 RVLLITPGFLQDPWCKYQMLQALTEAPGAEGCTIPLLLG-LSRAAYPPELRF 118
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 75/141 (53%), Gaps = 4/141 (2%)
Query: 294 DLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYN 353
+L+ + L+++ IN + F L L LDLS+N L+ ++++ F L L LN+ N
Sbjct: 77 NLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSS--LSSSWFGPLSSLKYLNLMGN 134
Query: 354 KMNKLD-SSIFKDLYRLQVLHLENNQIES-IHRNTFASLSNLHTLIMSNNKLKRIESNSL 411
L +S+F +L LQ L + N + S I R FA L++L+ L + L+ +S SL
Sbjct: 135 PYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSL 194
Query: 412 DSLTALSVLSLDNNELEYIEE 432
S+ + L+L +E ++ E
Sbjct: 195 KSIRDIHHLTLHLSESAFLLE 215
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 76/149 (51%), Gaps = 3/149 (2%)
Query: 348 LNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIE 407
L++++NK+ + + LQVL L++++I +I + F SL +L L +S+N L +
Sbjct: 57 LDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLS 116
Query: 408 SNSLDSLTALSVLSLDNNELEYIEENAL-KNSTSLQDFHL-NGNKLTEIPKV-LRNLHSL 464
S+ L++L L+L N + + +L N T+LQ + N +EI ++ L SL
Sbjct: 117 SSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSL 176
Query: 465 KTLDLGDNLITEINNLSLNSLHQLAGLRL 493
L++ + + SL S+ + L L
Sbjct: 177 NELEIKALSLRNYQSQSLKSIRDIHHLTL 205
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 66/135 (48%), Gaps = 3/135 (2%)
Query: 369 LQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELE 428
++ L L N+I I + +NL LI+ ++++ IE ++ SL +L L L +N L
Sbjct: 54 MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS 113
Query: 429 YIEENALKNSTSLQDFHLNGN--KLTEIPKVLRNLHSLKTLDLGD-NLITEINNLSLNSL 485
+ + +SL+ +L GN + + + NL +L+TL +G+ +EI + L
Sbjct: 114 SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGL 173
Query: 486 HQLAGLRLTENNISN 500
L L + ++ N
Sbjct: 174 TSLNELEIKALSLRN 188
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 60/136 (44%), Gaps = 3/136 (2%)
Query: 773 CTCYHDVSWEAN-VIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQI 831
C+ +S +A+ V D + + +P + L L N+I +G LQ+
Sbjct: 22 CSAQESLSCDASGVCDGRSRSF-TSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQV 80
Query: 832 LFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYIS 891
L L SS + TI F L L L L DN L+ + F L +L+ L L N +
Sbjct: 81 LILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLG 140
Query: 892 -NRTFLSLTHLKVLQL 906
F +LT+L+ L++
Sbjct: 141 VTSLFPNLTNLQTLRI 156
Score = 38.5 bits (88), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 55/110 (50%), Gaps = 11/110 (10%)
Query: 874 LENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSF--AVWHLSSQIQSITLTSN 931
L L+ELY+ NK+ + + + + L V+++ N++ S ++ + +Q I L +N
Sbjct: 476 LPRLQELYISRNKLKTLPDASLFPV--LLVMKIASNQLKSVPDGIFDRLTSLQKIWLHTN 533
Query: 932 PWSCDCDFTEKFRDYLQR--SRSSVHDISQIRCM-TGSEVGFTIMRTVIP 978
PW C C DYL R +++S + +C +G V I T++P
Sbjct: 534 PWDCSCPRI----DYLSRWLNKNSQKEQGSAKCSGSGKPVRSIICPTLVP 579
Score = 38.1 bits (87), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 60/137 (43%), Gaps = 18/137 (13%)
Query: 177 NSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSL 236
N+ +PD+ P + + +LNL+ + V T L VLD+SNN+ DS
Sbjct: 423 NTFHPMPDSCQWP-EKMRFLNLSSTGIRVVKTC---------IPQTLEVLDVSNNNLDS- 471
Query: 237 PAEGFSR-LSRLQELYLQGNILTFLADHALDGXXXXXXXXXXXXXXXXIPPELFNQSRDL 295
FS L RLQELY+ N L L D +L +P +F++ L
Sbjct: 472 ----FSLFLPRLQELYISRNKLKTLPDASL--FPVLLVMKIASNQLKSVPDGIFDRLTSL 525
Query: 296 KEVYLQNNSINVLAPGI 312
++++L N + P I
Sbjct: 526 QKIWLHTNPWDCSCPRI 542
Score = 34.7 bits (78), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 47/214 (21%), Positives = 102/214 (47%), Gaps = 14/214 (6%)
Query: 336 AATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHL-ENNQIESIHRNTF--ASLSN 392
+ +S L ++ + + +K+ + S + L L+ L L EN +E +N+ + +
Sbjct: 329 STVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPS 388
Query: 393 LHTLIMSNNKLKRIESNS--LDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNK 450
L TL++S N L+ ++ L +L L+ L + N + ++ + ++ +L+
Sbjct: 389 LQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSC-QWPEKMRFLNLSSTG 447
Query: 451 LTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLS 510
+ + + +L+ LD+ +N +++ SL L +L L ++ N + +
Sbjct: 448 IRVVKTCIP--QTLEVLDVSNN---NLDSFSL-FLPRLQELYISRNKLKTLPDASL--FP 499
Query: 511 VLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGN 544
VL ++ +ASN+++ V G FD ++L I L N
Sbjct: 500 VLLVMKIASNQLKSVPDGIFDRLTSLQKIWLHTN 533
Score = 30.4 bits (67), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 78/202 (38%), Gaps = 53/202 (26%)
Query: 295 LKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSG------------- 341
+K + ++N+ + ++ L L LDLS N + EE++ + G
Sbjct: 338 VKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN 397
Query: 342 --------------LHRLVVLNIAYNKMNKL-DSSIFKDLYR------------------ 368
L L L+I+ N + + DS + + R
Sbjct: 398 HLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQ 457
Query: 369 -LQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNEL 427
L+VL + NN ++S L L L +S NKLK + SL L V+ + +N+L
Sbjct: 458 TLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLKTLPDASL--FPVLLVMKIASNQL 511
Query: 428 EYIEENALKNSTSLQDFHLNGN 449
+ + + TSLQ L+ N
Sbjct: 512 KSVPDGIFDRLTSLQKIWLHTN 533
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 75/141 (53%), Gaps = 4/141 (2%)
Query: 294 DLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYN 353
+L+ + L+++ IN + F L L LDLS+N L+ ++++ F L L LN+ N
Sbjct: 51 NLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSS--LSSSWFGPLSSLKYLNLMGN 108
Query: 354 KMNKLD-SSIFKDLYRLQVLHLENNQIES-IHRNTFASLSNLHTLIMSNNKLKRIESNSL 411
L +S+F +L LQ L + N + S I R FA L++L+ L + L+ +S SL
Sbjct: 109 PYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSL 168
Query: 412 DSLTALSVLSLDNNELEYIEE 432
S+ + L+L +E ++ E
Sbjct: 169 KSIRDIHHLTLHLSESAFLLE 189
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 76/149 (51%), Gaps = 3/149 (2%)
Query: 348 LNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIE 407
L++++NK+ + + LQVL L++++I +I + F SL +L L +S+N L +
Sbjct: 31 LDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLS 90
Query: 408 SNSLDSLTALSVLSLDNNELEYIEENAL-KNSTSLQDFHL-NGNKLTEIPKV-LRNLHSL 464
S+ L++L L+L N + + +L N T+LQ + N +EI ++ L SL
Sbjct: 91 SSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSL 150
Query: 465 KTLDLGDNLITEINNLSLNSLHQLAGLRL 493
L++ + + SL S+ + L L
Sbjct: 151 NELEIKALSLRNYQSQSLKSIRDIHHLTL 179
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 66/135 (48%), Gaps = 3/135 (2%)
Query: 369 LQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELE 428
++ L L N+I I + +NL LI+ ++++ IE ++ SL +L L L +N L
Sbjct: 28 MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS 87
Query: 429 YIEENALKNSTSLQDFHLNGN--KLTEIPKVLRNLHSLKTLDLGD-NLITEINNLSLNSL 485
+ + +SL+ +L GN + + + NL +L+TL +G+ +EI + L
Sbjct: 88 SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGL 147
Query: 486 HQLAGLRLTENNISN 500
L L + ++ N
Sbjct: 148 TSLNELEIKALSLRN 162
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 49/111 (44%), Gaps = 1/111 (0%)
Query: 797 LPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIIL 856
+P + L L N+I +G LQ+L L SS + TI F L L L
Sbjct: 20 IPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHL 79
Query: 857 RLDDNRLTEIRGYEFERLENLRELYLQYNKIIYIS-NRTFLSLTHLKVLQL 906
L DN L+ + F L +L+ L L N + F +LT+L+ L++
Sbjct: 80 DLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRI 130
Score = 37.7 bits (86), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 60/137 (43%), Gaps = 18/137 (13%)
Query: 177 NSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSL 236
N+ +PD+ P + + +LNL+ + V T L VLD+SNN+ DS
Sbjct: 397 NTFHPMPDSCQWP-EKMRFLNLSSTGIRVVKTC---------IPQTLEVLDVSNNNLDS- 445
Query: 237 PAEGFSR-LSRLQELYLQGNILTFLADHALDGXXXXXXXXXXXXXXXXIPPELFNQSRDL 295
FS L RLQELY+ N L L D +L +P +F++ L
Sbjct: 446 ----FSLFLPRLQELYISRNKLKTLPDASL--FPVLLVMKISRNQLKSVPDGIFDRLTSL 499
Query: 296 KEVYLQNNSINVLAPGI 312
++++L N + P I
Sbjct: 500 QKIWLHTNPWDCSCPRI 516
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 8/78 (10%)
Query: 874 LENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSF--AVWHLSSQIQSITLTSN 931
L L+ELY+ NK+ + + + + L V+++ N++ S ++ + +Q I L +N
Sbjct: 450 LPRLQELYISRNKLKTLPDASLFPV--LLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTN 507
Query: 932 PWSCDCDFTEKFRDYLQR 949
PW C C DYL R
Sbjct: 508 PWDCSCPRI----DYLSR 521
Score = 30.4 bits (67), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 77/202 (38%), Gaps = 53/202 (26%)
Query: 295 LKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSG------------- 341
+K + ++N+ + ++ L L LDLS N + EE++ + G
Sbjct: 312 VKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN 371
Query: 342 --------------LHRLVVLNIAYNKMNKL-DSSIFKDLYR------------------ 368
L L L+I+ N + + DS + + R
Sbjct: 372 HLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQ 431
Query: 369 -LQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNEL 427
L+VL + NN ++S L L L +S NKLK + SL L V+ + N+L
Sbjct: 432 TLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLKTLPDASL--FPVLLVMKISRNQL 485
Query: 428 EYIEENALKNSTSLQDFHLNGN 449
+ + + TSLQ L+ N
Sbjct: 486 KSVPDGIFDRLTSLQKIWLHTN 507
>pdb|3UB2|A Chain A, Tir Domain Of MalTIRAP
Length = 146
Score = 45.4 bits (106), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 54/112 (48%), Gaps = 2/112 (1%)
Query: 1083 KLFDAFVSYSSKDEAFVAEELAPILENGDPAYKLCLHYREFPVGGYIGDTIVQAVESSRR 1142
K +D V +S +D A++L LE + + L R+ GG I + QA+ SS
Sbjct: 9 KDYDVCVCHSEED-LVAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHC 67
Query: 1143 TIMVLSENFIKSEWCRYEFKSAHHQVLRGKKRLIVILLGEVPQKDLDPDIRL 1194
+++++ F++ WC+Y+ A + G + + LL + + P++R
Sbjct: 68 RVLLITPGFLQDPWCKYQMLQALTEA-PGAEGCTIPLLSGLSRAAYPPELRF 118
>pdb|2Y92|A Chain A, Crystal Structure Of Mal Adaptor Protein
Length = 145
Score = 45.4 bits (106), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 54/112 (48%), Gaps = 2/112 (1%)
Query: 1083 KLFDAFVSYSSKDEAFVAEELAPILENGDPAYKLCLHYREFPVGGYIGDTIVQAVESSRR 1142
K +D V +S +D A++L LE + + L R+ GG I + QA+ SS
Sbjct: 8 KDYDVCVCHSEED-LVAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHC 66
Query: 1143 TIMVLSENFIKSEWCRYEFKSAHHQVLRGKKRLIVILLGEVPQKDLDPDIRL 1194
+++++ F++ WC+Y+ A + G + + LL + + P++R
Sbjct: 67 RVLLITPGFLQDPWCKYQMLQALTEA-PGAEGCTIPLLSGLSRAAYPPELRF 117
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 72/145 (49%), Gaps = 4/145 (2%)
Query: 295 LKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNK 354
+K + L NN I ++ L L L++N + + +FS L L L+++YN
Sbjct: 28 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINT--IEEDSFSSLGSLEHLDLSYNY 85
Query: 355 MNKLDSSIFKDLYRLQVLHLENNQIESIHRNT-FASLSNLHTLIMSN-NKLKRIESNSLD 412
++ L SS FK L L L+L N +++ + F+ L+ L L + N + +I+
Sbjct: 86 LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFA 145
Query: 413 SLTALSVLSLDNNELEYIEENALKN 437
LT L L +D ++L+ E +LK+
Sbjct: 146 GLTFLEELEIDASDLQSYEPKSLKS 170
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 55/116 (47%), Gaps = 4/116 (3%)
Query: 451 LTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLS 510
L IP L ++K+LDL +N IT I+N L L L LT N I+ I + F L
Sbjct: 17 LNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLG 74
Query: 511 VLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIG--GLFPKLPNLVWLNI 564
L L+L+ N + + + F S+L + L GN +G LF L L L +
Sbjct: 75 SLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRV 130
Score = 40.0 bits (92), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 8/75 (10%)
Query: 877 LRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSF--AVWHLSSQIQSITLTSNPWS 934
L+ELY+ NK++ + + + L + L VL++ N++ S ++ + +Q I L +NPW
Sbjct: 453 LKELYISRNKLMTLPDASLLPM--LLVLKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 510
Query: 935 CDCDFTEKFRDYLQR 949
C C DYL R
Sbjct: 511 CSCPRI----DYLSR 521
Score = 37.4 bits (85), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 66/150 (44%), Gaps = 30/150 (20%)
Query: 401 NKLKRIESNSLDSL-----TALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIP 455
N + + S SL+S+ A+ L L NN + YI + L+ +LQ L N
Sbjct: 7 NGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN------ 60
Query: 456 KVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTIL 515
G N I E S +SL L L L+ N +SN+S F+ LS LT L
Sbjct: 61 --------------GINTIEED---SFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFL 103
Query: 516 NLASNKIQKV-EAGTFDNNSNLVAIRLDGN 544
NL N + + E F + + L +R+ GN
Sbjct: 104 NLLGNPYKTLGETSLFSHLTKLQILRV-GN 132
Score = 36.6 bits (83), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 77/202 (38%), Gaps = 52/202 (25%)
Query: 223 LRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGXXXXXXXXXXXXXXX 282
++ LDLSNN + R LQ L L
Sbjct: 28 VKSLDLSNNRITYISNSDLQRCVNLQALVL------------------------------ 57
Query: 283 XIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGL 342
+N IN + F+ L L LDLS N L+ ++++ F L
Sbjct: 58 ------------------TSNGINTIEEDSFSSLGSLEHLDLSYNYLSN--LSSSWFKPL 97
Query: 343 HRLVVLNIAYNKMNKL-DSSIFKDLYRLQVLHLEN-NQIESIHRNTFASLSNLHTLIMSN 400
L LN+ N L ++S+F L +LQ+L + N + I R FA L+ L L +
Sbjct: 98 SSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDA 157
Query: 401 NKLKRIESNSLDSLTALSVLSL 422
+ L+ E SL S+ +S L L
Sbjct: 158 SDLQSYEPKSLKSIQNVSHLIL 179
Score = 34.3 bits (77), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 71/147 (48%), Gaps = 3/147 (2%)
Query: 393 LHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLT 452
+ +L +SNN++ I ++ L L L L +N + IEE++ + SL+ L+ N L+
Sbjct: 28 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 87
Query: 453 EIPKV-LRNLHSLKTLDLGDNLITEINNLSLNS-LHQLAGLRLTE-NNISNISKGVFEKL 509
+ + L SL L+L N + SL S L +L LR+ + + I + F L
Sbjct: 88 NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGL 147
Query: 510 SVLTILNLASNKIQKVEAGTFDNNSNL 536
+ L L + ++ +Q E + + N+
Sbjct: 148 TFLEELEIDASDLQSYEPKSLKSIQNV 174
Score = 33.9 bits (76), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 3/93 (3%)
Query: 844 NKTFNGLKELII-LRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLK 902
N +GL E + L L +NR+T I + +R NL+ L L N I I +F SL L+
Sbjct: 18 NSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLE 77
Query: 903 VLQLDHNRITSF-AVWHLS-SQIQSITLTSNPW 933
L L +N +++ + W S + + L NP+
Sbjct: 78 HLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPY 110
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 44/80 (55%)
Query: 465 KTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQK 524
+ L L N IT++ +SL QL L L N ++ + GVF+KL+ LT L L N+++
Sbjct: 43 QVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQLKS 102
Query: 525 VEAGTFDNNSNLVAIRLDGN 544
+ G FDN +L I L N
Sbjct: 103 IPMGVFDNLKSLTHIYLFNN 122
Score = 43.5 bits (101), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 54/108 (50%), Gaps = 4/108 (3%)
Query: 491 LRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIG 550
L L N I+ + GVF+ L+ LT LNLA N++ + G FD + L + L N L I
Sbjct: 45 LHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQLKSIP 104
Query: 551 -GLFPKLPNLVWLNISENLLEW-FDYALIPADLQWLDIHGNQISELGN 596
G+F L +L + + N W + + I W+ H + ++ LGN
Sbjct: 105 MGVFDNLKSLTHIYLFNN--PWDCECSDILYLKNWIVQHASIVNPLGN 150
Score = 43.5 bits (101), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 2/80 (2%)
Query: 298 VYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNK 357
++L N I L PG+F+ LTQL L+L+ N+LT + F L +L L + N++
Sbjct: 45 LHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTA--LPVGVFDKLTKLTHLALHINQLKS 102
Query: 358 LDSSIFKDLYRLQVLHLENN 377
+ +F +L L ++L NN
Sbjct: 103 IPMGVFDNLKSLTHIYLFNN 122
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 44/79 (55%)
Query: 347 VLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRI 406
VL++ N++ KL+ +F L +L L+L NQ+ ++ F L+ L L + N+LK I
Sbjct: 44 VLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQLKSI 103
Query: 407 ESNSLDSLTALSVLSLDNN 425
D+L +L+ + L NN
Sbjct: 104 PMGVFDNLKSLTHIYLFNN 122
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 40/80 (50%)
Query: 370 QVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEY 429
QVLHL NQI + F SL+ L L ++ N+L + D LT L+ L+L N+L+
Sbjct: 43 QVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQLKS 102
Query: 430 IEENALKNSTSLQDFHLNGN 449
I N SL +L N
Sbjct: 103 IPMGVFDNLKSLTHIYLFNN 122
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 321 VLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIE 380
VL L N++T+ + F L +L LN+A N++ L +F L +L L L NQ++
Sbjct: 44 VLHLYINQITK--LEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQLK 101
Query: 381 SIHRNTFASLSNLHTLIMSNN 401
SI F +L +L + + NN
Sbjct: 102 SIPMGVFDNLKSLTHIYLFNN 122
Score = 38.1 bits (87), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 53/132 (40%), Gaps = 28/132 (21%)
Query: 830 QILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIY 889
Q+L L + + + F+ L +L L L N+LT + F++L L L L N++
Sbjct: 43 QVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQLKS 102
Query: 890 ISNRTF---LSLTHLKVLQLDHNRITSFAVWHLSSQIQSITLTSNPWSCDCDFTEKFRDY 946
I F SLTH I L +NPW C+C +++
Sbjct: 103 IPMGVFDNLKSLTH-------------------------IYLFNNPWDCECSDILYLKNW 137
Query: 947 LQRSRSSVHDIS 958
+ + S V+ +
Sbjct: 138 IVQHASIVNPLG 149
Score = 35.4 bits (80), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 401 NKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIP-KVLR 459
N++ ++E DSLT L+ L+L N+L + T L L+ N+L IP V
Sbjct: 50 NQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQLKSIPMGVFD 109
Query: 460 NLHSLKTLDLGDN 472
NL SL + L +N
Sbjct: 110 NLKSLTHIYLFNN 122
Score = 35.4 bits (80), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 56/131 (42%), Gaps = 14/131 (10%)
Query: 769 CPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKK 828
CP+ C+C ++C + +P IP L+L N+I + F +
Sbjct: 13 CPSQCSC------SGTTVNCQERSLAS-VPAGIPTTTQVLHLYINQITKLEPGVFDSLTQ 65
Query: 829 LQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYL------ 882
L L L + + + F+ L +L L L N+L I F+ L++L +YL
Sbjct: 66 LTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQLKSIPMGVFDNLKSLTHIYLFNNPWD 125
Query: 883 -QYNKIIYISN 892
+ + I+Y+ N
Sbjct: 126 CECSDILYLKN 136
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
Query: 495 ENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIG-GLF 553
E +++++ G+ VL +L N+I K+E G FD+ + L + L N LT + G+F
Sbjct: 28 ERSLASVPAGIPTTTQVL---HLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVF 84
Query: 554 PKLPNLVWLNISENLLE 570
KL L L + N L+
Sbjct: 85 DKLTKLTHLALHINQLK 101
Score = 31.2 bits (69), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 33/80 (41%), Gaps = 6/80 (7%)
Query: 176 MNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDS 235
+N I L +F L L+YLNL N+L+ + F L L L N S
Sbjct: 49 INQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLT------KLTHLALHINQLKS 102
Query: 236 LPAEGFSRLSRLQELYLQGN 255
+P F L L +YL N
Sbjct: 103 IPMGVFDNLKSLTHIYLFNN 122
>pdb|3UB3|A Chain A, D96n Variant Of Tir Domain Of MalTIRAP
Length = 146
Score = 43.5 bits (101), Expect = 7e-04, Method: Composition-based stats.
Identities = 27/112 (24%), Positives = 54/112 (48%), Gaps = 2/112 (1%)
Query: 1083 KLFDAFVSYSSKDEAFVAEELAPILENGDPAYKLCLHYREFPVGGYIGDTIVQAVESSRR 1142
K +D V +S ++ A++L LE + + L R+ GG I + QA+ SS
Sbjct: 9 KDYDVCVCHS-EENLVAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHC 67
Query: 1143 TIMVLSENFIKSEWCRYEFKSAHHQVLRGKKRLIVILLGEVPQKDLDPDIRL 1194
+++++ F++ WC+Y+ A + G + + LL + + P++R
Sbjct: 68 RVLLITPGFLQDPWCKYQMLQALTEA-PGAEGCTIPLLSGLSRAAYPPELRF 118
>pdb|1T3G|A Chain A, Crystal Structure Of The TollINTERLEUKIN-1 Receptor (Tir)
Domain Of Human Il-1rapl
pdb|1T3G|B Chain B, Crystal Structure Of The TollINTERLEUKIN-1 Receptor (Tir)
Domain Of Human Il-1rapl
Length = 159
Score = 41.2 bits (95), Expect = 0.004, Method: Composition-based stats.
Identities = 43/161 (26%), Positives = 82/161 (50%), Gaps = 28/161 (17%)
Query: 1083 KLFDAFVSYSSKD-----------EAFVAEELAPILENGDPAYKLCLHYREF-PVGGYIG 1130
K +DA++SY+ D E F E L LE YKL + R+ P G YI
Sbjct: 1 KDYDAYLSYTKVDPDQWNQETGEEERFALEILPDXLEK-HYGYKLFIPDRDLIPTGTYIE 59
Query: 1131 DTIVQAVESSRRTIMVLSENF-IKSEWCRYEFKSA-HHQVLRGKKRLIVI----LLGEVP 1184
D + + V+ S+R I+V + N+ ++ W +E ++ + ++ G+ ++I+I L G
Sbjct: 60 D-VARCVDQSKRLIIVXTPNYVVRRGWSIFELETRLRNXLVTGEIKVILIECSELRGIXN 118
Query: 1185 QKDLDPDIRLYLKSNTYLQWG----DKL---FWEKLKFALP 1218
++++ ++ +K T ++W +KL FW++L++ P
Sbjct: 119 YQEVEA-LKHTIKLLTVIKWHGPKCNKLNSKFWKRLQYEXP 158
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 51/106 (48%), Gaps = 3/106 (2%)
Query: 419 VLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEIN 478
L L N ++ I N K L +LNGN LTE+P ++NL +L+ LDL N +T +
Sbjct: 228 ALDLSNLQIFNISANIFKYDF-LTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSL- 285
Query: 479 NLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQK 524
L S QL +N ++ + F L L L + N ++K
Sbjct: 286 PAELGSCFQLKYFYFFDNMVTTLP-WEFGNLCNLQFLGVEGNPLEK 330
Score = 32.0 bits (71), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 222 NLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFL 260
NLRVLDLS+N SLPAE +L+ Y N++T L
Sbjct: 271 NLRVLDLSHNRLTSLPAE-LGSCFQLKYFYFFDNMVTTL 308
>pdb|3H16|A Chain A, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
pdb|3H16|B Chain B, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
pdb|3H16|C Chain C, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
pdb|3H16|D Chain D, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
Length = 154
Score = 37.7 bits (86), Expect = 0.043, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 6/95 (6%)
Query: 1086 DAFVSYSSKDEAFVAEELAPILENGDPAYKLCLHYREFPV--GGYIGDTIVQAVESSRRT 1143
D F+S++ +D+A E LA L + Y +F + G + +I + + SSR
Sbjct: 22 DIFISHAWEDKADFVEALAHTLRAAGAE----VWYDDFSLRPGDSLRRSIDKGLGSSRFG 77
Query: 1144 IMVLSENFIKSEWCRYEFKSAHHQVLRGKKRLIVI 1178
I+VLS +F K EW + E G+ R++ I
Sbjct: 78 IVVLSTHFFKKEWPQKELDGLFQLESSGRSRILPI 112
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 37.4 bits (85), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 10/77 (12%)
Query: 177 NSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSL 236
N I L ++F Q L YL+L+ NKL ++ +NL+ LDLS N+FD+L
Sbjct: 55 NRIQYLDISVFKFNQELEYLDLSHNKLVKIS---------CHPTVNLKHLDLSFNAFDAL 105
Query: 237 P-AEGFSRLSRLQELYL 252
P + F +S+L+ L L
Sbjct: 106 PICKEFGNMSQLKFLGL 122
Score = 35.8 bits (81), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 77/167 (46%), Gaps = 7/167 (4%)
Query: 382 IHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNS--T 439
+H + +S L SNN L + LT L L L N+L+ + + A +
Sbjct: 315 VHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMK 374
Query: 440 SLQDFHLNGNKLT--EIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENN 497
SLQ ++ N ++ E SL +L++ N++T+ L ++ L L N
Sbjct: 375 SLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPP--RIKVLDLHSNK 432
Query: 498 ISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGN 544
I +I K V KL L LN+ASN+++ V G FD ++L I L N
Sbjct: 433 IKSIPKQVV-KLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478
Score = 30.4 bits (67), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 38/64 (59%)
Query: 343 HRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNK 402
+ +LNI+ N +++L +S L +L++L + +N+I+ + + F L L +S+NK
Sbjct: 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80
Query: 403 LKRI 406
L +I
Sbjct: 81 LVKI 84
Score = 30.0 bits (66), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 30/61 (49%)
Query: 855 ILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSF 914
IL + N ++E+ + L LR L + +N+I Y+ F L+ L L HN++
Sbjct: 25 ILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKI 84
Query: 915 A 915
+
Sbjct: 85 S 85
Score = 29.6 bits (65), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 95/451 (21%), Positives = 192/451 (42%), Gaps = 63/451 (13%)
Query: 295 LKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNK 354
L+ + + +N I L +F +L LDLS+N+L + + L L++++N
Sbjct: 47 LRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCHPTV-----NLKHLDLSFNA 101
Query: 355 MNKLD-SSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHT----LIMSNNKLKRIESN 409
+ L F ++ +L+ L L +E +++ +++L+ L++ ++ +
Sbjct: 102 FDALPICKEFGNMSQLKFLGLSTTHLE---KSSVLPIAHLNISKVLLVLGETYGEKEDPE 158
Query: 410 SLDSLT--ALSVLSLDNNELEYIEENALKNSTSLQ----DFHLNGNKLTEIPKVLRNLHS 463
L +L ++ N E +I + ++K +L+ L NK + +L L +
Sbjct: 159 GLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQT 218
Query: 464 LKTL-DLGDNLITEINNLSLNSLHQLAGLRLTENNISNIS-KGVFE---------KLSVL 512
L +L N I N + L + + +ISN+ +G + L L
Sbjct: 219 NPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKAL 278
Query: 513 TILNLASNKIQKVEAGTFD--NNSNLVAIRLDGNYLTDIGGLFP-KLPNLVWLNISENLL 569
+I + S+ ++ ++ +N N+ + G + + L P K+ + L+ S NLL
Sbjct: 279 SIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHM--LCPSKISPFLHLDFSNNLL 336
Query: 570 --EWFDYALIPADLQWLDIHGNQISELGNYFEIESQLR-LTYFDASSNKLT--ELTGNAI 624
F+ +L+ L + NQ+ EL E+ +Q++ L D S N ++ E G+
Sbjct: 337 TDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDC- 395
Query: 625 PHSVENLFLTNNLISKVQPYTFF--MKPNLTRVDLVGNRLKNINQTALRISPLP------ 676
S L+ N+ S + T F + P + +DL N++K+I + +++ L
Sbjct: 396 --SWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVAS 453
Query: 677 -SHKNIPD-----------FYIGENPFQCDC 695
K++PD ++ NP+ C C
Sbjct: 454 NQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 484
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 37.4 bits (85), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 69/169 (40%), Gaps = 28/169 (16%)
Query: 446 LNGNKLTEIPKVLRNLHSLKTLDLG--DNLITEINNLSLNSLHQLAGLRLTENNISNISK 503
LN K IP L NL L L +G +NL+ I ++ L QL L +T N+S
Sbjct: 60 LNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPP-AIAKLTQLHYLYITHTNVSGAIP 118
Query: 504 GVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLT----DIGGLFPKL--- 556
++ L L+ + N + + + NLV I DGN ++ D G F KL
Sbjct: 119 DFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTS 178
Query: 557 ------------P------NLVWLNISENLLEWFDYALIPADLQWLDIH 587
P NL ++++S N+LE L +D IH
Sbjct: 179 MTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIH 227
Score = 33.5 bits (75), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 87/199 (43%), Gaps = 7/199 (3%)
Query: 302 NNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSS 361
NN + + P I LTQL L +++ ++ + S + LV L+ +YN ++
Sbjct: 87 NNLVGPIPPAIAK-LTQLHYLYITHTNVSGAIPDF--LSQIKTLVTLDFSYNALSGTLPP 143
Query: 362 IFKDLYRLQVLHLENNQIESIHRNTFASLSNLHT-LIMSNNKLKRIESNSLDSLTALSVL 420
L L + + N+I +++ S S L T + +S N+L + +L L+ +
Sbjct: 144 SISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFV 202
Query: 421 SLDNNELEYIEENALKNSTSLQDFHLNGNKLT-EIPKVLRNLHSLKTLDLGDNLITEINN 479
L N LE + + Q HL N L ++ KV + +L LDL +N I
Sbjct: 203 DLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLS-KNLNGLDLRNNRIYGTLP 261
Query: 480 LSLNSLHQLAGLRLTENNI 498
L L L L ++ NN+
Sbjct: 262 QGLTQLKFLHSLNVSFNNL 280
>pdb|1A9N|A Chain A, Crystal Structure Of The Spliceosomal U2b''-U2a' Protein
Complex Bound To A Fragment Of U2 Small Nuclear Rna
pdb|1A9N|C Chain C, Crystal Structure Of The Spliceosomal U2b''-U2a' Protein
Complex Bound To A Fragment Of U2 Small Nuclear Rna
Length = 176
Score = 37.4 bits (85), Expect = 0.058, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 4/80 (5%)
Query: 342 LHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNN 401
L + ++ + N++ KLD F L RL+ L + NN+I I +L +L LI++NN
Sbjct: 41 LDQFDAIDFSDNEIRKLDG--FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNN 98
Query: 402 KLKRIESNSLDSLTALSVLS 421
L +E LD L +L L+
Sbjct: 99 SL--VELGDLDPLASLKSLT 116
>pdb|2IFG|A Chain A, Structure Of The Extracellular Segment Of Human Trka In
Complex With Nerve Growth Factor
pdb|2IFG|B Chain B, Structure Of The Extracellular Segment Of Human Trka In
Complex With Nerve Growth Factor
Length = 347
Score = 37.4 bits (85), Expect = 0.061, Method: Composition-based stats.
Identities = 25/104 (24%), Positives = 49/104 (47%), Gaps = 14/104 (13%)
Query: 600 IESQLRLTYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVG 659
IE+Q L + + L +L G + NL + + + V P F P L+R++L
Sbjct: 38 IENQQHLQHLE-----LRDLRGLG---ELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89
Query: 660 NRLKNINQTALRISPLPSHKNIPDFYIGENPFQCDCNMQWLQSY 703
N L++++ ++ ++ + + NP C C ++WLQ +
Sbjct: 90 NALESLSWKTVQ------GLSLQELVLSGNPLHCSCALRWLQRW 127
>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria
Monocytogenes
Length = 263
Score = 37.0 bits (84), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 75/138 (54%), Gaps = 13/138 (9%)
Query: 335 NAATFSGLH---RLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLS 391
N + +G+ L L++++N+++ L S KDL +L+ L + N++++++ A LS
Sbjct: 52 NIQSLAGMQFFTNLKELHLSHNQISDL--SPLKDLTKLEELSVNRNRLKNLNGIPSACLS 109
Query: 392 NLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKL 451
L + NN+L+ +++SL L L +LS+ NN+L+ I + + D H GN++
Sbjct: 110 RL---FLDNNELR--DTDSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLH--GNEI 162
Query: 452 TEIPKVLRNLHSLKTLDL 469
T + R L + +DL
Sbjct: 163 TNTGGLTR-LKKVNWIDL 179
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 59/110 (53%), Gaps = 11/110 (10%)
Query: 294 DLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYN 353
+LKE++L +N I+ L+P LT+L L ++ N L +N + L RL + N N
Sbjct: 64 NLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKN--LNGIPSACLSRLFLDN---N 116
Query: 354 KMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKL 403
++ DS I L L++L + NN+++SI F LS L L + N++
Sbjct: 117 ELRDTDSLIH--LKNLEILSIRNNKLKSIVMLGF--LSKLEVLDLHGNEI 162
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 62/128 (48%), Gaps = 9/128 (7%)
Query: 488 LAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLT 547
L L L+ N IS++S + L+ L L++ N+++ + ++ L + LD N L
Sbjct: 65 LKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGIP---SACLSRLFLDNNELR 119
Query: 548 DIGGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLT 607
D L L NL L+I N L+ + L+ LD+HGN+I+ G ++ ++
Sbjct: 120 DTDSLI-HLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNTGGLTRLK---KVN 175
Query: 608 YFDASSNK 615
+ D + K
Sbjct: 176 WIDLTGQK 183
>pdb|3BZ5|A Chain A, Functional Domain Of Inlj From Listeria Monocytogenes
Includes A Cysteine Ladder
Length = 457
Score = 36.6 bits (83), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 81/184 (44%), Gaps = 32/184 (17%)
Query: 450 KLTEIPKVLRNLHSLKTLDLGDNL--------ITEINNLSLNSLHQLAGLRLTENNISNI 501
KLT + K++ +++ TLDL N ++ NL + L +L L N ++ +
Sbjct: 62 KLTGLTKLICTSNNITTLDLSQNTNLTYLACDSNKLTNLDVTPLTKLTYLNCDTNKLTKL 121
Query: 502 SKGVFEKLSVLTILNLASNKIQKVEAG------TFDNNSNLVAIRLDGNYLTDIGGLFPK 555
+ +LT LN A N + +++ D + N +LD T + L
Sbjct: 122 D---VSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCS 178
Query: 556 LPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNK 615
+ L++S+N L L L+ N I++L ++ ++LT+ D SSNK
Sbjct: 179 FNKITELDVSQNKL-----------LNRLNCDTNNITKL----DLNQNIQLTFLDCSSNK 223
Query: 616 LTEL 619
LTE+
Sbjct: 224 LTEI 227
Score = 35.4 bits (80), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 70/266 (26%), Positives = 118/266 (44%), Gaps = 46/266 (17%)
Query: 354 KMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDS 413
+M D+ + L L L N+ I + L+ L LI ++N + ++ L
Sbjct: 29 EMQATDTISEEQLATLTSLDCHNSSITDMTG--IEKLTGLTKLICTSNNITTLD---LSQ 83
Query: 414 LTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNL 473
T L+ L+ D+N+L ++ L T L + + NKLT++ L L L+ N
Sbjct: 84 NTNLTYLACDSNKLTNLDVTPL---TKLTYLNCDTNKLTKLDVSQNPL--LTYLNCARNT 138
Query: 474 ITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNN 533
+TEI+ +S N+ QL L N I+K + LT L+ + NKI +++ N
Sbjct: 139 LTEID-VSHNT--QLTELDCHLN--KKITKLDVTPQTQLTTLDCSFNKITELDVS---QN 190
Query: 534 SNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISE 593
L + D N N+ L++++N+ L +LD N+++E
Sbjct: 191 KLLNRLNCDTN-------------NITKLDLNQNI-----------QLTFLDCSSNKLTE 226
Query: 594 LGNYFEIESQLRLTYFDASSNKLTEL 619
+ ++ +LTYFD S N LTEL
Sbjct: 227 I----DVTPLTQLTYFDCSVNPLTEL 248
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 35.0 bits (79), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 66/149 (44%), Gaps = 20/149 (13%)
Query: 843 HNKTFNGLKELIILRLDDNRLTEIRGYEFERLE-NLRELYLQYNKIIYISNRTFLSLTHL 901
+++T + +++L L N LT G F L ++ L L N+I+ I +THL
Sbjct: 420 YDRTCAWAESILVLNLSSNMLT---GSVFRCLPPKVKVLDLHNNRIMSIPK----DVTHL 472
Query: 902 KVLQ---LDHNRITSF--AVWHLSSQIQSITLTSNPWSCDC-------DFTEKFRDYLQR 949
+ LQ + N++ S V+ + +Q I L NPW C C ++ K ++
Sbjct: 473 QALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINKHSGVVRN 532
Query: 950 SRSSVHDISQIRCMTGSEVGFTIMRTVIP 978
S SV S +G V I T++P
Sbjct: 533 SAGSVAPDSAKCSGSGKPVRSIICPTLVP 561
Score = 34.7 bits (78), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 65/137 (47%), Gaps = 7/137 (5%)
Query: 388 ASLSNLHTLIMSNNKLKRIESNSL--DSLTALSVLSLDNNEL-EYIEENALKNSTSLQDF 444
++L L TLI+ N LK +L ++++L L + N L + + + S+
Sbjct: 374 STLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVL 433
Query: 445 HLNGNKLTEIPKVLRNL-HSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISK 503
+L+ N LT V R L +K LDL +N I I + L L L + N + ++
Sbjct: 434 NLSSNMLTG--SVFRCLPPKVKVLDLHNNRIMSIPK-DVTHLQALQELNVASNQLKSVPD 490
Query: 504 GVFEKLSVLTILNLASN 520
GVF++L+ L + L N
Sbjct: 491 GVFDRLTSLQYIWLHDN 507
Score = 34.3 bits (77), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 10/79 (12%)
Query: 177 NSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSL 236
N I +L +F Q L YL+++ N+L N++ + +LR LDLS N FD L
Sbjct: 86 NRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCCPMA---------SLRHLDLSFNDFDVL 136
Query: 237 PA-EGFSRLSRLQELYLQG 254
P + F L++L L L
Sbjct: 137 PVCKEFGNLTKLTFLGLSA 155
Score = 34.3 bits (77), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 57/122 (46%), Gaps = 10/122 (8%)
Query: 810 LDGNRIPVVGSHSFIGRKKLQILFLN--SSHVETIHNKTFNGLKELI--------ILRLD 859
+ +R P+VGS F+ L + + S+ +E++ + + L + L L
Sbjct: 1 MSQDRKPIVGSFHFVCALALIVGSMTPFSNELESMVDYSNRNLTHVPKDLPPRTKALSLS 60
Query: 860 DNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHL 919
N ++E+R + L LR L L +N+I + FL L+ L + HNR+ + + +
Sbjct: 61 QNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCCPM 120
Query: 920 SS 921
+S
Sbjct: 121 AS 122
Score = 32.7 bits (73), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 63/136 (46%), Gaps = 7/136 (5%)
Query: 413 SLTALSVLSLDNNELEYIEENAL--KNSTSLQDFHLNGNKLTE--IPKVLRNLHSLKTLD 468
+L L L L N L+ + AL KN +SL+ ++ N L + S+ L+
Sbjct: 375 TLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLN 434
Query: 469 LGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAG 528
L N++T L ++ L L N I +I K V L L LN+ASN+++ V G
Sbjct: 435 LSSNMLTGSVFRCLPP--KVKVLDLHNNRIMSIPKDV-THLQALQELNVASNQLKSVPDG 491
Query: 529 TFDNNSNLVAIRLDGN 544
FD ++L I L N
Sbjct: 492 VFDRLTSLQYIWLHDN 507
Score = 30.0 bits (66), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 53/111 (47%), Gaps = 2/111 (1%)
Query: 344 RLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKL 403
R L+++ N +++L L L+VL L +N+I S+ + F +L L +S+N+L
Sbjct: 53 RTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRL 112
Query: 404 KRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEI 454
+ I + SL L + D + L +E N T L L+ K ++
Sbjct: 113 QNISCCPMASLRHLDLSFNDFDVLPVCKE--FGNLTKLTFLGLSAAKFRQL 161
Score = 30.0 bits (66), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 50/123 (40%), Gaps = 35/123 (28%)
Query: 191 QSLSYLNLTQNKLSNVATFSFSNYDTARC-GINLRVLDLSNNSFDSLPAEGFSRLSRLQE 249
+S+ LNL+ N L+ RC ++VLDL NN S+P + + L LQE
Sbjct: 428 ESILVLNLSSNMLTG---------SVFRCLPPKVKVLDLHNNRIMSIPKD-VTHLQALQE 477
Query: 250 LYLQGNILTFLADHALDGXXXXXXXXXXXXXXXXIPPELFNQSRDLKEVYLQNNSINVLA 309
L + N L +P +F++ L+ ++L +N +
Sbjct: 478 LNVASNQLK------------------------SVPDGVFDRLTSLQYIWLHDNPWDCTC 513
Query: 310 PGI 312
PGI
Sbjct: 514 PGI 516
>pdb|1M9L|A Chain A, Relaxation-Based Refined Structure Of Chlamydomonas Outer
Arm Dynein Light Chain 1
Length = 199
Score = 35.0 bits (79), Expect = 0.26, Method: Composition-based stats.
Identities = 38/117 (32%), Positives = 58/117 (49%), Gaps = 12/117 (10%)
Query: 322 LDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDS-SIFKDLYRLQVLHLENNQIE 380
L LS N + + ++ SG+ L +L++ N + K+++ D L+ L + NQI
Sbjct: 54 LALSTNNIEK----ISSLSGMENLRILSLGRNLIKKIENLDAVAD--TLEELWISYNQIA 107
Query: 381 SIHRNTFASLSNLHTLIMSNNKLKRI-ESNSLDSLTALSVLSLDNNEL--EYIEENA 434
S+ + L NL L MSNNK+ E + L +L L L L N L +Y E NA
Sbjct: 108 SL--SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNA 162
Score = 33.9 bits (76), Expect = 0.60, Method: Composition-based stats.
Identities = 35/101 (34%), Positives = 49/101 (48%), Gaps = 17/101 (16%)
Query: 797 LPPRIPMDAT--------ELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHN--KT 846
+PP MDAT L L N I + S S G + L+IL L + ++ I N
Sbjct: 35 IPPIEKMDATLSTLKACKHLALSTNNIEKISSLS--GMENLRILSLGRNLIKKIENLDAV 92
Query: 847 FNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKI 887
+ L+EL I N++ + G E+L NLR LY+ NKI
Sbjct: 93 ADTLEELWI---SYNQIASLSG--IEKLVNLRVLYMSNNKI 128
>pdb|1DS9|A Chain A, Solution Structure Of Chlamydomonas Outer Arm Dynein Light
Chain 1
Length = 198
Score = 35.0 bits (79), Expect = 0.26, Method: Composition-based stats.
Identities = 38/117 (32%), Positives = 58/117 (49%), Gaps = 12/117 (10%)
Query: 322 LDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDS-SIFKDLYRLQVLHLENNQIE 380
L LS N + + ++ SG+ L +L++ N + K+++ D L+ L + NQI
Sbjct: 53 LALSTNNIEK----ISSLSGMENLRILSLGRNLIKKIENLDAVAD--TLEELWISYNQIA 106
Query: 381 SIHRNTFASLSNLHTLIMSNNKLKRI-ESNSLDSLTALSVLSLDNNEL--EYIEENA 434
S+ + L NL L MSNNK+ E + L +L L L L N L +Y E NA
Sbjct: 107 SL--SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNA 161
Score = 33.9 bits (76), Expect = 0.60, Method: Composition-based stats.
Identities = 35/101 (34%), Positives = 49/101 (48%), Gaps = 17/101 (16%)
Query: 797 LPPRIPMDAT--------ELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHN--KT 846
+PP MDAT L L N I + S S G + L+IL L + ++ I N
Sbjct: 34 IPPIEKMDATLSTLKACKHLALSTNNIEKISSLS--GMENLRILSLGRNLIKKIENLDAV 91
Query: 847 FNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKI 887
+ L+EL I N++ + G E+L NLR LY+ NKI
Sbjct: 92 ADTLEELWI---SYNQIASLSG--IEKLVNLRVLYMSNNKI 127
>pdb|3U5C|B Chain B, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|B Chain B, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 255
Score = 35.0 bits (79), Expect = 0.27, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 46/91 (50%), Gaps = 6/91 (6%)
Query: 368 RLQVLHLENNQIESIHRNTFASLSNLHTL--IMSNNKLKRIESNSLDSLTALSVLSLDNN 425
R+ + Q + R+++A S++ + ++S K ++ ++L LT+ + + N
Sbjct: 136 RIFAIAFTRKQANQVKRHSYAQSSHIRAIRKVISEILTKEVQGSTLAQLTSKLIPEVINK 195
Query: 426 ELEYIEENALKNSTSLQDFHLNGNKLTEIPK 456
E+E NA K+ LQ+ H+ KL + PK
Sbjct: 196 EIE----NATKDIFPLQNIHVRKVKLLKQPK 222
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 34.3 bits (77), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 91/202 (45%), Gaps = 19/202 (9%)
Query: 420 LSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITE-IN 478
L L N L I L T L+ +L+ N L E L +L +L+TLDL +N + E +
Sbjct: 39 LDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV 97
Query: 479 NLSLNSLHQLAGLRLTENNISNI--SKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNL 536
S+ +LH NNIS + S+G +K + LA+NKI + S +
Sbjct: 98 GPSIETLHA------ANNNISRVSCSRGQGKK-----NIYLANNKITMLRDLDEGCRSRV 146
Query: 537 VAIRLDGNYL--TDIGGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISEL 594
+ L N + + L L LN+ N + ++ A L+ LD+ N+++ +
Sbjct: 147 QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFM 206
Query: 595 GNYFEIESQLRLTYFDASSNKL 616
G E +S +T+ +NKL
Sbjct: 207 GP--EFQSAAGVTWISLRNNKL 226
Score = 32.0 bits (71), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 65/278 (23%), Positives = 119/278 (42%), Gaps = 49/278 (17%)
Query: 426 ELEYIEENALKNSTS--------LQDFHLNGNKLTEIPKV-LRNLHSLKTLDLGDNLITE 476
++E + +++LK + + +++ L+GN L++I L L+ L+L N++ E
Sbjct: 13 KIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE 72
Query: 477 INNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNL 536
L L SL L L L N + + G + L+ A+N I +V N
Sbjct: 73 T--LDLESLSTLRTLDLNNNYVQELLVG-----PSIETLHAANNNISRVSCSRGQGKKN- 124
Query: 537 VAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGN 596
I L N +T +L D + +Q+LD+ N+I + N
Sbjct: 125 --IYLANNKIT--------------------MLRDLDEG-CRSRVQYLDLKLNEIDTV-N 160
Query: 597 YFEI-ESQLRLTYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRV 655
+ E+ S L + + N + ++ G + ++ L L++N ++ + P F +T +
Sbjct: 161 FAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWI 219
Query: 656 DLVGNRLKNINQTALRISPLPSHKNIPDFYIGENPFQC 693
L N+L I + ALR S +N+ F + N F C
Sbjct: 220 SLRNNKLVLI-EKALRFS-----QNLEHFDLRGNGFHC 251
>pdb|3RFE|A Chain A, Crystal Structure Of Glycoprotein Gpib Ectodomain
pdb|3RFE|B Chain B, Crystal Structure Of Glycoprotein Gpib Ectodomain
Length = 130
Score = 33.5 bits (75), Expect = 0.72, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 7/48 (14%)
Query: 769 CPNNCTCYHDVSWEANVIDCSTGGYD-NQLPPRIPMDATELYLDGNRI 815
CP C+C ++DC G LP P+D TEL L GN +
Sbjct: 2 CPAPCSC------AGTLVDCGRRGLTWASLPTAFPVDTTELVLTGNNL 43
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 33.5 bits (75), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 86/176 (48%), Gaps = 18/176 (10%)
Query: 294 DLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYN 353
+L + L NN I ++P L + L L+ N+LT+ + L L L + N
Sbjct: 67 NLTSLNLSNNQITDISP--IQYLPNVTKLFLNGNKLTD----IKPLANLKNLGWLFLDEN 120
Query: 354 KMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDS 413
K+ S KDL +L+ L LE+N I I N L L +L + NNK+ I L
Sbjct: 121 KVKD--LSSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSR 174
Query: 414 LTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDL 469
LT L LSL++N++ I L T LQ+ +L+ N +++ LR L LK LD+
Sbjct: 175 LTKLDTLSLEDNQISDIV--PLAGLTKLQNLYLSKNHISD----LRALAGLKNLDV 224
>pdb|4AY9|X Chain X, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Y Chain Y, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Z Chain Z, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
Length = 350
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 56/120 (46%), Gaps = 2/120 (1%)
Query: 775 CYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFL 834
C+H + +N + ++P +P +A EL ++ V+ +F G L+ + +
Sbjct: 2 CHHRICHCSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEI 61
Query: 835 NSSHV-ETIHNKTFNGLKELIILRLDD-NRLTEIRGYEFERLENLRELYLQYNKIIYISN 892
+ + V E I F+ L +L +R++ N L I F+ L NL+ L + I ++ +
Sbjct: 62 SQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPD 121
Score = 30.8 bits (68), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 38/71 (53%)
Query: 808 LYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIR 867
L+L+ N I + + +F G + ++ +++++E + N F+G +IL + R+ +
Sbjct: 159 LWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLP 218
Query: 868 GYEFERLENLR 878
Y E L+ LR
Sbjct: 219 SYGLENLKKLR 229
>pdb|3REZ|A Chain A, Glycoprotein Gpib Variant
pdb|3REZ|B Chain B, Glycoprotein Gpib Variant
pdb|3REZ|C Chain C, Glycoprotein Gpib Variant
pdb|3REZ|D Chain D, Glycoprotein Gpib Variant
Length = 129
Score = 32.3 bits (72), Expect = 1.6, Method: Composition-based stats.
Identities = 32/125 (25%), Positives = 47/125 (37%), Gaps = 32/125 (25%)
Query: 607 TYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNIN 666
T D LT L A+P L LT N ++ V P F P L
Sbjct: 13 TLVDCGRRGLTALP--ALPARTTELVLTGNNLTSVPPGAFDHLPQL-------------- 56
Query: 667 QTALRISPLPSHKNIPDFYIGENPFQCDCNMQWLQSYSVNKERNKPNLVDLDTVTCKLLY 726
+TA ++G NP++CDC++ +L+ + ++ P DL V L
Sbjct: 57 RTA---------------HLGANPWRCDCSLTYLRLWLEDRPERAP-YRDLRCVAPPALR 100
Query: 727 NRANP 731
R P
Sbjct: 101 GRLLP 105
>pdb|1XWD|C Chain C, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
pdb|1XWD|F Chain F, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
Length = 252
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 55/118 (46%), Gaps = 2/118 (1%)
Query: 775 CYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFL 834
C+H + +N + ++P +P +A EL ++ V+ +F G L+ + +
Sbjct: 2 CHHRICHCSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEI 61
Query: 835 NSSHV-ETIHNKTFNGLKELIILRLDD-NRLTEIRGYEFERLENLRELYLQYNKIIYI 890
+ + V E I F+ L +L +R++ N L I F+ L NL+ L + I ++
Sbjct: 62 SQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHL 119
>pdb|3OJA|A Chain A, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 487
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 91/202 (45%), Gaps = 19/202 (9%)
Query: 420 LSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITE-IN 478
L L N L I L T L+ +L+ N L E L +L +L+TLDL +N + E +
Sbjct: 39 LDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV 97
Query: 479 NLSLNSLHQLAGLRLTENNISNI--SKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNL 536
S+ +LH NNIS + S+G +K + LA+NKI + S +
Sbjct: 98 GPSIETLH------AANNNISRVSCSRGQGKK-----NIYLANNKITMLRDLDEGCRSRV 146
Query: 537 VAIRLDGNYLTDI--GGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISEL 594
+ L N + + L L LN+ N + ++ A L+ LD+ N+++ +
Sbjct: 147 QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFM 206
Query: 595 GNYFEIESQLRLTYFDASSNKL 616
G F +S +T+ +NKL
Sbjct: 207 GPEF--QSAAGVTWISLRNNKL 226
Score = 30.4 bits (67), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 57/234 (24%), Positives = 106/234 (45%), Gaps = 22/234 (9%)
Query: 464 LKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQ 523
+K LDL N +++I+ L +L L L+ N + E LS L L+L +N +Q
Sbjct: 36 VKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ 93
Query: 524 KVEAGTFDNNSNLVAIRLDGNYLTDIG---GLFPKLPNLVWLNISENLLEWFDYALIPAD 580
++ G ++ + N ++ + G K N+ N +L D +
Sbjct: 94 ELLVG-----PSIETLHAANNNISRVSCSRGQGKK--NIYLANNKITMLRDLDEG-CRSR 145
Query: 581 LQWLDIHGNQISELGNYFEI-ESQLRLTYFDASSNKLTELTGNAIPHSVENLFLTNNLIS 639
+Q+LD+ N+I + N+ E+ S L + + N + ++ G + ++ L L++N ++
Sbjct: 146 VQYLDLKLNEIDTV-NFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLA 204
Query: 640 KVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHKNIPDFYIGENPFQC 693
+ P F +T + L N+L I + ALR S +N+ F + N F C
Sbjct: 205 FMGP-EFQSAAGVTWISLRNNKLVLI-EKALRFS-----QNLEHFDLRGNGFHC 251
>pdb|3CVR|A Chain A, Crystal Structure Of The Full Length Ipah3
Length = 571
Score = 32.0 bits (71), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 61/122 (50%), Gaps = 18/122 (14%)
Query: 553 FPKLP-NLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDA 611
P+LP +L +L+ +N L +PA L+ LD+ NQ++ L + L Y +A
Sbjct: 95 LPELPASLEYLDACDNRLSTLPE--LPASLKHLDVDNNQLTXLPELPAL-----LEYINA 147
Query: 612 SSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFF--MKPNLTRVDLVGNRLKNINQTA 669
+N+LT L +P S+E L + NN + TF + +L +D+ N L+++
Sbjct: 148 DNNQLTXLP--ELPTSLEVLSVRNNQL------TFLPELPESLEALDVSTNLLESLPAVP 199
Query: 670 LR 671
+R
Sbjct: 200 VR 201
>pdb|3N29|A Chain A, Crystal Structure Of Carboxynorspermidine Decarboxylase
Complexed With Norspermidine From Campylobacter Jejuni
pdb|3N29|B Chain B, Crystal Structure Of Carboxynorspermidine Decarboxylase
Complexed With Norspermidine From Campylobacter Jejuni
Length = 418
Score = 31.6 bits (70), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
Query: 817 VVGSHSFIGRKKL--QILFLNSSHVETIHNKTFNGLKELIILRLD-DNRLTEIRGYEFE 872
V+G ++F + K+ +I+FL+ H + N TFNG++ ++ LD N L IR + ++
Sbjct: 354 VMGEYAFDKKLKIGDKIVFLDQIHYTIVKNTTFNGIRLPNLMLLDHKNELQMIREFSYK 412
>pdb|3G2F|A Chain A, Crystal Structure Of The Kinase Domain Of Bone
Morphogenetic Protein Receptor Type Ii (Bmpr2) At 2.35 A
Resolution
pdb|3G2F|B Chain B, Crystal Structure Of The Kinase Domain Of Bone
Morphogenetic Protein Receptor Type Ii (Bmpr2) At 2.35 A
Resolution
Length = 336
Score = 31.2 bits (69), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 24/52 (46%)
Query: 649 KPNLTRVDLVGNRLKNINQTALRISPLPSHKNIPDFYIGENPFQCDCNMQWL 700
+P +V NR IN+ + PL H NI F +G+ D M++L
Sbjct: 37 RPVAVKVFSFANRQNFINEKNIYRVPLMEHDNIARFIVGDERVTADGRMEYL 88
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 31.2 bits (69), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 84/180 (46%), Gaps = 18/180 (10%)
Query: 290 NQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLN 349
N+ + ++ N+ I + GI L + L L+ N+LT+ + L L L
Sbjct: 40 NELNSIDQIIANNSDIKSVQ-GI-QYLPNVTKLFLNGNKLTD----IKPLTNLKNLGWLF 93
Query: 350 IAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESN 409
+ NK+ L S L+ L LE+N I I N L L +L + NNK+ I
Sbjct: 94 LDENKIKDLSSLKDLKK--LKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--T 147
Query: 410 SLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDL 469
L LT L LSL++N++ I L T LQ+ +L+ N +++ LR L LK LD+
Sbjct: 148 VLSRLTKLDTLSLEDNQISDIV--PLAGLTKLQNLYLSKNHISD----LRALAGLKNLDV 201
>pdb|3R5A|A Chain A, Pseudomonas Aeruginosa Dapd (Pa3666) In Complex With
D-2-Aminopimelate
pdb|3R5A|B Chain B, Pseudomonas Aeruginosa Dapd (Pa3666) In Complex With
D-2-Aminopimelate
pdb|3R5A|C Chain C, Pseudomonas Aeruginosa Dapd (Pa3666) In Complex With
D-2-Aminopimelate
pdb|3R5A|D Chain D, Pseudomonas Aeruginosa Dapd (Pa3666) In Complex With
D-2-Aminopimelate
pdb|3R5A|E Chain E, Pseudomonas Aeruginosa Dapd (Pa3666) In Complex With
D-2-Aminopimelate
pdb|3R5A|F Chain F, Pseudomonas Aeruginosa Dapd (Pa3666) In Complex With
D-2-Aminopimelate
pdb|3R5B|A Chain A, Pseudomonas Aeruginosa Dapd (Pa3666) In Complex With
L-2-Aminopimelate
pdb|3R5B|B Chain B, Pseudomonas Aeruginosa Dapd (Pa3666) In Complex With
L-2-Aminopimelate
pdb|3R5B|C Chain C, Pseudomonas Aeruginosa Dapd (Pa3666) In Complex With
L-2-Aminopimelate
pdb|3R5B|D Chain D, Pseudomonas Aeruginosa Dapd (Pa3666) In Complex With
L-2-Aminopimelate
pdb|3R5B|E Chain E, Pseudomonas Aeruginosa Dapd (Pa3666) In Complex With
L-2-Aminopimelate
pdb|3R5B|F Chain F, Pseudomonas Aeruginosa Dapd (Pa3666) In Complex With
L-2-Aminopimelate
pdb|3R5C|A Chain A, Pseudomonas Aeruginosa Dapd (Pa3666) In Complex With Coa
And Succinate
pdb|3R5C|B Chain B, Pseudomonas Aeruginosa Dapd (Pa3666) In Complex With Coa
And Succinate
pdb|3R5C|C Chain C, Pseudomonas Aeruginosa Dapd (Pa3666) In Complex With Coa
And Succinate
pdb|3R5D|A Chain A, Pseudomonas Aeruginosa Dapd (Pa3666) Apoprotein
pdb|3R5D|B Chain B, Pseudomonas Aeruginosa Dapd (Pa3666) Apoprotein
pdb|3R5D|C Chain C, Pseudomonas Aeruginosa Dapd (Pa3666) Apoprotein
pdb|3R5D|D Chain D, Pseudomonas Aeruginosa Dapd (Pa3666) Apoprotein
pdb|3R5D|E Chain E, Pseudomonas Aeruginosa Dapd (Pa3666) Apoprotein
pdb|3R5D|F Chain F, Pseudomonas Aeruginosa Dapd (Pa3666) Apoprotein
Length = 347
Score = 31.2 bits (69), Expect = 4.3, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 535 NLVAIRLDGNYLTDIGGLFPKLPNLVWLNI 564
+L++ RL + ++ G+FP LPN+ W NI
Sbjct: 114 HLLSHRLVKPHAVNLSGIFPLLPNVAWTNI 143
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 30.4 bits (67), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 87/180 (48%), Gaps = 18/180 (10%)
Query: 290 NQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLN 349
N+ + ++ N+ I + GI L + L L+ N+LT+ + L L L
Sbjct: 43 NELNSIDQIIANNSDIKSVQ-GI-QYLPNVTKLFLNGNKLTD----IKPLANLKNLGWLF 96
Query: 350 IAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESN 409
+ NK+ S KDL +L+ L LE+N I I N L L +L + NNK+ I
Sbjct: 97 LDENKVKD--LSSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--T 150
Query: 410 SLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDL 469
L LT L LSL++N++ I L T LQ+ +L+ N +++ LR L LK LD+
Sbjct: 151 VLSRLTKLDTLSLEDNQISDIV--PLAGLTKLQNLYLSKNHISD----LRALAGLKNLDV 204
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,969,322
Number of Sequences: 62578
Number of extensions: 1286916
Number of successful extensions: 5220
Number of sequences better than 100.0: 147
Number of HSP's better than 100.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 54
Number of HSP's that attempted gapping in prelim test: 3013
Number of HSP's gapped (non-prelim): 1053
length of query: 1269
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1159
effective length of database: 8,089,757
effective search space: 9376028363
effective search space used: 9376028363
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)