Query psy5670
Match_columns 1269
No_of_seqs 986 out of 7713
Neff 9.2
Searched_HMMs 46136
Date Fri Aug 16 23:37:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5670.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5670hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 1E-47 2.2E-52 509.9 41.4 535 85-694 70-609 (968)
2 PLN00113 leucine-rich repeat r 100.0 6.3E-47 1.4E-51 502.4 41.3 321 221-545 69-391 (968)
3 KOG4194|consensus 100.0 4.6E-45 1E-49 403.2 11.9 425 395-974 56-489 (873)
4 KOG4194|consensus 100.0 6.6E-42 1.4E-46 378.2 10.0 423 6-470 18-447 (873)
5 KOG4237|consensus 100.0 1.2E-38 2.5E-43 338.9 1.1 444 274-861 51-498 (498)
6 KOG0472|consensus 100.0 2.8E-36 6.1E-41 320.6 -15.4 475 191-692 45-541 (565)
7 KOG4237|consensus 100.0 5.4E-33 1.2E-37 295.9 1.5 318 488-970 69-390 (498)
8 KOG0472|consensus 100.0 7.5E-35 1.6E-39 309.8 -13.4 454 84-570 68-541 (565)
9 KOG0618|consensus 100.0 6.3E-32 1.4E-36 316.0 -6.0 461 166-660 44-510 (1081)
10 KOG0618|consensus 100.0 1.2E-31 2.5E-36 313.8 -4.2 467 169-667 23-493 (1081)
11 KOG0444|consensus 99.9 1.2E-28 2.6E-33 274.2 -4.1 337 220-567 31-372 (1255)
12 KOG0444|consensus 99.9 3.8E-28 8.2E-33 270.3 -3.3 369 83-478 6-378 (1255)
13 PF01582 TIR: TIR domain; Int 99.9 9.1E-26 2E-30 225.2 11.0 130 1087-1216 1-141 (141)
14 PRK15387 E3 ubiquitin-protein 99.9 6E-21 1.3E-25 233.8 18.7 154 489-665 204-357 (788)
15 PLN03210 Resistant to P. syrin 99.8 1.1E-19 2.3E-24 241.5 29.7 321 126-472 548-879 (1153)
16 smart00255 TIR Toll - interleu 99.8 5.7E-21 1.2E-25 191.5 12.2 133 1084-1219 1-139 (140)
17 PRK15387 E3 ubiquitin-protein 99.8 1.9E-20 4.2E-25 229.4 17.5 262 344-668 202-463 (788)
18 PLN03210 Resistant to P. syrin 99.8 2.4E-18 5.1E-23 228.8 28.1 345 182-567 549-903 (1153)
19 PRK15370 E3 ubiquitin-protein 99.8 3.7E-18 8.1E-23 211.3 14.8 110 828-948 326-440 (754)
20 PRK15370 E3 ubiquitin-protein 99.7 9.5E-18 2.1E-22 207.7 14.2 58 605-666 347-404 (754)
21 cd00116 LRR_RI Leucine-rich re 99.6 1.5E-16 3.2E-21 184.2 2.6 278 395-691 2-319 (319)
22 cd00116 LRR_RI Leucine-rich re 99.6 1.5E-15 3.2E-20 175.8 4.9 133 439-571 137-292 (319)
23 PLN03194 putative disease resi 99.5 1.7E-13 3.7E-18 135.8 10.5 94 1081-1181 23-118 (187)
24 PF13676 TIR_2: TIR domain; PD 99.4 1.8E-13 3.9E-18 128.5 1.6 89 1087-1183 1-89 (102)
25 KOG0617|consensus 99.3 8.2E-14 1.8E-18 133.0 -4.6 156 220-382 32-188 (264)
26 KOG0617|consensus 99.3 5.3E-14 1.2E-18 134.3 -7.3 40 531-570 147-186 (264)
27 PF14580 LRR_9: Leucine-rich r 99.3 7.3E-12 1.6E-16 127.1 6.6 122 812-938 6-130 (175)
28 PF14580 LRR_9: Leucine-rich r 99.1 2.1E-11 4.6E-16 123.7 3.8 123 803-928 19-147 (175)
29 KOG3207|consensus 99.0 3.9E-11 8.4E-16 131.8 1.0 204 413-616 119-338 (505)
30 KOG1909|consensus 99.0 6.5E-11 1.4E-15 126.9 2.0 190 338-546 87-310 (382)
31 KOG1259|consensus 99.0 4.7E-11 1E-15 124.2 0.9 134 483-619 281-414 (490)
32 KOG3207|consensus 99.0 1.5E-10 3.2E-15 127.3 1.6 132 438-569 196-338 (505)
33 KOG0531|consensus 99.0 7.6E-11 1.7E-15 140.5 -0.8 220 391-620 49-271 (414)
34 KOG0531|consensus 99.0 8E-11 1.7E-15 140.3 -1.5 246 437-691 70-317 (414)
35 PLN03150 hypothetical protein; 98.9 8.9E-10 1.9E-14 137.1 7.7 110 829-938 420-532 (623)
36 PF13855 LRR_8: Leucine rich r 98.9 5.9E-10 1.3E-14 93.2 3.5 60 852-911 2-61 (61)
37 KOG1259|consensus 98.9 2.4E-10 5.2E-15 119.0 1.3 131 534-666 284-415 (490)
38 KOG1909|consensus 98.9 3.9E-10 8.5E-15 121.0 1.8 219 363-592 26-283 (382)
39 COG4886 Leucine-rich repeat (L 98.9 2.3E-09 5E-14 127.8 8.1 178 486-669 116-296 (394)
40 PF13855 LRR_8: Leucine rich r 98.9 1.1E-09 2.5E-14 91.4 3.8 61 827-887 1-61 (61)
41 COG4886 Leucine-rich repeat (L 98.8 6.9E-09 1.5E-13 123.7 7.4 175 439-619 116-292 (394)
42 KOG0532|consensus 98.8 3.6E-10 7.8E-15 127.9 -4.3 171 394-571 78-248 (722)
43 KOG0532|consensus 98.7 6.2E-10 1.3E-14 126.0 -3.9 192 440-637 76-271 (722)
44 KOG4658|consensus 98.6 2E-08 4.4E-13 127.3 5.4 104 222-326 546-651 (889)
45 KOG4658|consensus 98.3 4.1E-07 8.8E-12 115.7 5.6 278 367-665 523-809 (889)
46 KOG1859|consensus 98.3 2.5E-08 5.4E-13 115.9 -5.8 135 808-948 169-306 (1096)
47 PLN03150 hypothetical protein; 98.2 1.8E-06 3.9E-11 107.8 7.6 107 805-911 420-527 (623)
48 KOG1644|consensus 98.1 3.5E-06 7.5E-11 84.4 5.6 122 806-930 22-149 (233)
49 TIGR00864 PCC polycystin catio 98.1 1.8E-06 4E-11 116.0 4.5 68 906-974 2-71 (2740)
50 KOG1859|consensus 98.1 6.6E-08 1.4E-12 112.5 -7.8 175 410-592 104-292 (1096)
51 PF13306 LRR_5: Leucine rich r 98.1 6.2E-06 1.3E-10 81.1 6.8 108 818-929 3-111 (129)
52 KOG1644|consensus 98.1 4.2E-06 9.2E-11 83.8 5.2 102 829-933 21-125 (233)
53 PF13306 LRR_5: Leucine rich r 98.1 1.1E-05 2.3E-10 79.4 8.1 120 164-295 9-128 (129)
54 KOG4579|consensus 98.0 3E-07 6.5E-12 85.8 -3.1 115 828-946 54-169 (177)
55 PF08937 DUF1863: MTH538 TIR-l 98.0 5.6E-06 1.2E-10 81.0 5.7 99 1085-1187 1-114 (130)
56 KOG2982|consensus 98.0 1.1E-06 2.4E-11 92.5 0.5 202 416-618 46-263 (418)
57 KOG3678|consensus 98.0 3.6E-05 7.7E-10 85.2 10.8 119 1079-1205 607-737 (832)
58 COG5238 RNA1 Ran GTPase-activa 98.0 2.1E-06 4.6E-11 89.2 1.0 69 337-405 86-171 (388)
59 PRK15386 type III secretion pr 97.9 3.4E-05 7.4E-10 88.1 9.5 32 605-637 157-188 (426)
60 COG5238 RNA1 Ran GTPase-activa 97.9 4.3E-06 9.4E-11 86.9 1.8 241 413-664 28-317 (388)
61 KOG2120|consensus 97.8 5.1E-07 1.1E-11 94.9 -7.2 108 269-377 185-296 (419)
62 PF12799 LRR_4: Leucine Rich r 97.8 2.1E-05 4.6E-10 60.1 3.4 38 852-890 2-39 (44)
63 PRK15386 type III secretion pr 97.8 0.00012 2.7E-09 83.6 10.9 31 558-589 157-187 (426)
64 KOG2982|consensus 97.8 9.9E-06 2.2E-10 85.4 1.9 85 342-426 70-157 (418)
65 PF12799 LRR_4: Leucine Rich r 97.7 2.4E-05 5.2E-10 59.7 3.3 39 876-915 2-40 (44)
66 KOG2120|consensus 97.7 1.5E-06 3.2E-11 91.5 -5.3 83 416-498 186-272 (419)
67 KOG4579|consensus 97.7 4.1E-06 8.9E-11 78.3 -1.9 103 829-932 29-134 (177)
68 PF08357 SEFIR: SEFIR domain; 97.6 0.00054 1.2E-08 69.2 11.7 115 1087-1207 3-142 (150)
69 KOG4341|consensus 97.6 4E-06 8.6E-11 92.7 -4.3 16 6-21 76-91 (483)
70 smart00082 LRRCT Leucine rich 97.4 0.00013 2.7E-09 58.3 2.6 37 931-969 1-37 (51)
71 KOG4341|consensus 97.3 2.3E-05 5.1E-10 86.8 -3.5 62 437-498 370-438 (483)
72 KOG3665|consensus 97.1 0.00023 5.1E-09 88.6 2.2 141 167-332 122-265 (699)
73 KOG3665|consensus 96.8 0.00056 1.2E-08 85.3 2.6 82 389-472 146-230 (699)
74 TIGR00864 PCC polycystin catio 96.8 0.0008 1.7E-08 91.7 4.1 83 656-748 1-83 (2740)
75 KOG2123|consensus 96.4 0.0003 6.5E-09 73.9 -3.2 84 392-479 20-105 (388)
76 KOG2123|consensus 96.3 0.00045 9.7E-09 72.7 -2.8 82 828-913 20-102 (388)
77 PF10137 TIR-like: Predicted n 96.0 0.027 5.8E-07 53.9 8.2 111 1087-1210 2-125 (125)
78 KOG1947|consensus 95.9 0.0019 4.2E-08 79.4 -0.4 35 244-278 187-223 (482)
79 smart00013 LRRNT Leucine rich 95.7 0.011 2.3E-07 42.0 3.0 31 769-806 2-32 (33)
80 KOG2739|consensus 95.6 0.0088 1.9E-07 63.4 3.1 39 438-476 90-130 (260)
81 KOG2739|consensus 95.4 0.0084 1.8E-07 63.6 2.3 103 366-470 42-151 (260)
82 KOG1947|consensus 95.2 0.0045 9.8E-08 76.1 -0.6 35 342-376 187-223 (482)
83 PF01462 LRRNT: Leucine rich r 94.5 0.028 6E-07 38.1 2.0 27 769-802 2-28 (28)
84 PF00560 LRR_1: Leucine Rich R 93.9 0.026 5.5E-07 35.9 0.9 17 877-893 2-18 (22)
85 smart00369 LRR_TYP Leucine-ric 93.6 0.046 1E-06 36.4 1.8 23 874-896 1-23 (26)
86 smart00370 LRR Leucine-rich re 93.6 0.046 1E-06 36.4 1.8 23 874-896 1-23 (26)
87 smart00082 LRRCT Leucine rich 93.6 0.033 7.2E-07 44.2 1.3 50 689-745 1-50 (51)
88 PF00560 LRR_1: Leucine Rich R 93.1 0.038 8.2E-07 35.1 0.7 20 853-873 2-21 (22)
89 smart00370 LRR Leucine-rich re 92.2 0.099 2.2E-06 34.7 1.9 23 850-872 1-23 (26)
90 smart00369 LRR_TYP Leucine-ric 92.2 0.099 2.2E-06 34.7 1.9 23 850-872 1-23 (26)
91 KOG4308|consensus 90.5 0.0051 1.1E-07 73.6 -9.9 14 627-640 291-304 (478)
92 PF13504 LRR_7: Leucine rich r 90.4 0.15 3.3E-06 30.0 1.2 11 877-887 3-13 (17)
93 PF13504 LRR_7: Leucine rich r 90.3 0.17 3.6E-06 29.9 1.3 17 899-915 1-17 (17)
94 KOG0473|consensus 90.3 0.015 3.2E-07 60.1 -5.4 86 847-934 38-124 (326)
95 KOG4308|consensus 88.8 0.013 2.8E-07 70.3 -8.3 64 461-524 203-276 (478)
96 KOG0473|consensus 79.2 0.072 1.6E-06 55.2 -6.6 84 826-912 41-124 (326)
97 COG4271 Predicted nucleotide-b 76.8 13 0.00027 37.9 8.2 107 1086-1205 84-206 (233)
98 KOG3864|consensus 76.5 0.8 1.7E-05 47.0 -0.1 78 417-494 103-184 (221)
99 smart00365 LRR_SD22 Leucine-ri 76.5 1.6 3.6E-05 29.0 1.4 16 875-890 2-17 (26)
100 smart00013 LRRNT Leucine rich 76.1 2.2 4.9E-05 30.2 2.1 24 31-73 1-24 (33)
101 KOG3864|consensus 75.8 0.48 1E-05 48.6 -1.8 35 295-329 103-137 (221)
102 smart00365 LRR_SD22 Leucine-ri 74.1 2.7 5.9E-05 27.9 2.0 17 851-867 2-18 (26)
103 PF01462 LRRNT: Leucine rich r 70.6 2.4 5.2E-05 28.8 1.1 24 31-73 1-24 (28)
104 smart00364 LRR_BAC Leucine-ric 64.4 4.6 0.0001 26.8 1.5 18 579-596 2-19 (26)
105 KOG4242|consensus 63.2 21 0.00046 41.6 7.4 59 417-475 415-481 (553)
106 smart00364 LRR_BAC Leucine-ric 63.0 3.8 8.3E-05 27.1 0.9 18 899-916 2-19 (26)
107 PF13516 LRR_6: Leucine Rich r 59.5 3.5 7.6E-05 26.6 0.3 13 876-888 3-15 (24)
108 KOG3763|consensus 58.0 5.6 0.00012 47.2 1.8 62 875-936 218-285 (585)
109 COG4916 Uncharacterized protei 55.4 15 0.00032 38.9 4.1 124 1080-1216 173-303 (329)
110 PF15176 LRR19-TM: Leucine-ric 52.2 49 0.0011 30.0 6.2 8 1094-1101 83-90 (102)
111 PF08263 LRRNT_2: Leucine rich 51.5 10 0.00022 28.7 1.7 35 10-44 5-43 (43)
112 KOG4242|consensus 42.9 86 0.0019 37.0 8.0 59 440-498 414-480 (553)
113 smart00368 LRR_RI Leucine rich 39.9 23 0.0005 24.0 1.8 15 650-664 2-16 (28)
114 PF13271 DUF4062: Domain of un 39.6 1.3E+02 0.0027 26.6 7.1 63 1087-1151 2-64 (83)
115 KOG3763|consensus 33.9 26 0.00056 41.9 2.2 13 460-472 242-254 (585)
116 PF05014 Nuc_deoxyrib_tr: Nucl 32.5 2.1E+02 0.0046 26.8 7.9 83 1092-1183 9-99 (113)
117 PF02439 Adeno_E3_CR2: Adenovi 31.3 87 0.0019 23.0 3.6 13 1032-1044 8-20 (38)
118 PF15050 SCIMP: SCIMP protein 26.3 1.2E+02 0.0026 28.4 4.5 13 1043-1055 21-33 (133)
119 PF02009 Rifin_STEVOR: Rifin/s 22.1 1.4E+02 0.0031 33.6 5.2 7 692-698 21-27 (299)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1e-47 Score=509.91 Aligned_cols=535 Identities=25% Similarity=0.267 Sum_probs=304.8
Q ss_pred ceeEEEEEeCCceeeccCCCchhccCCcccceeEeccccCC-CCChhhccCCccCceeecccccCCCCccceeccchhhh
Q psy5670 85 YTVRLRIECGDMLFFQSSLSPGSFQTLIDLKDLSVEFCKIG-NLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHNVFT 163 (1269)
Q Consensus 85 ~~~~L~L~~~~~~~~~~~i~~~~f~~l~~L~~L~L~~~~i~-~i~~~~f~~l~~L~~L~L~~~~~~~~~~~~~i~~~~f~ 163 (1269)
+++.|+|+++.+ +...+.+|..+++|++|+|++|++. .+|...|.++++|++|+|++|+.. ..+ |.
T Consensus 70 ~v~~L~L~~~~i----~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~-----~~~-p~--- 136 (968)
T PLN00113 70 RVVSIDLSGKNI----SGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFT-----GSI-PR--- 136 (968)
T ss_pred cEEEEEecCCCc----cccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccc-----ccc-Cc---
Confidence 477888888873 3333558889999999999999885 576666667777777777654431 011 11
Q ss_pred hcCCCCCEEEccCCCCccCCcccCCCCCCCcEEECCCCCCCCCCccccCCCCcccCCCcccEEEcCCCCCCccCcccCCC
Q psy5670 164 DELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSR 243 (1269)
Q Consensus 164 ~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 243 (1269)
+.+++|++|+|++|.+....+..++.+++|++|+|++|.+.+..+..+.. +++|++|+|++|.+....+..+++
T Consensus 137 ~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~------l~~L~~L~L~~n~l~~~~p~~l~~ 210 (968)
T PLN00113 137 GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTN------LTSLEFLTLASNQLVGQIPRELGQ 210 (968)
T ss_pred cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhh------CcCCCeeeccCCCCcCcCChHHcC
Confidence 34566777777777666433334566666666666666665444433322 456666666666665554455666
Q ss_pred CCCCCEEEccCCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCCcccccCcccccCCCCCCEEE
Q psy5670 244 LSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLD 323 (1269)
Q Consensus 244 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 323 (1269)
+++|++|++++|.+.+..+..++++++|++|++++|.+....+..|.++++|++|++++|.+.+..|..+.++++|++|+
T Consensus 211 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 290 (968)
T PLN00113 211 MKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLD 290 (968)
T ss_pred cCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEE
Confidence 66666666666666655555566666666666666655544444455555666666665555554455555555555555
Q ss_pred CcCCCCCccccCcccccCCCCccEEEcCCCCCcccCchhhcCCCCCcEEEccCCcccccccccccCCCCCcEEEccCCcc
Q psy5670 324 LSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKL 403 (1269)
Q Consensus 324 L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l 403 (1269)
+++|.+.+ ..+..+.++++|+.|++++|.+.+..+..+..+++|+.|++++|.+
T Consensus 291 Ls~n~l~~--~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l------------------------ 344 (968)
T PLN00113 291 LSDNSLSG--EIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKF------------------------ 344 (968)
T ss_pred CcCCeecc--CCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCC------------------------
Confidence 55555543 1233444455555555555555444444444444444444444444
Q ss_pred cccCcccccCCCCCCEEEccCCCCCccChhhhcCCCCCcEEEccCCCCC-CchhhhcCCCCCcEEECCCCCCCccChhhh
Q psy5670 404 KRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLT-EIPKVLRNLHSLKTLDLGDNLITEINNLSL 482 (1269)
Q Consensus 404 ~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~ 482 (1269)
.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.+++..+..+
T Consensus 345 ~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~ 424 (968)
T PLN00113 345 SGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEF 424 (968)
T ss_pred cCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhH
Confidence 4444444444444444444444444444444444445555555555443 344444555555555555555555444455
Q ss_pred hccccCCeeeccCCcCCCCChhhhcCCCCCCEEEcCCCccccccccccCCCCCccEEEcccccccc-cCCcCCCCCCCcE
Q psy5670 483 NSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTD-IGGLFPKLPNLVW 561 (1269)
Q Consensus 483 ~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~-l~~~~~~l~~L~~ 561 (1269)
..++.|+.|++++|.+....+..+..+++|+.|++++|++.+..+..+ ..++|+.|++++|+++. +|..+..+++|+.
T Consensus 425 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~ 503 (968)
T PLN00113 425 TKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQ 503 (968)
T ss_pred hcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCE
Confidence 555555555555555533333334455555555665555555444333 23556666666665552 3444555555555
Q ss_pred EEccCCcCccccccccCCCccEEECCCCCcccccccccccccccccEEEcCCCccccccCCccc--CCccEEEccCcccc
Q psy5670 562 LNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIP--HSVENLFLTNNLIS 639 (1269)
Q Consensus 562 L~Ls~n~l~~~~~~~lp~~L~~L~Ls~n~l~~~~~~~~l~~~~~L~~LdLs~N~l~~~~~~~~~--~~L~~L~Ls~N~i~ 639 (1269)
|++++|++.. .+|. .+..+++|++|+|++|.+++..+..+. ++|+.|+|++|+++
T Consensus 504 L~Ls~N~l~~----~~p~-------------------~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 560 (968)
T PLN00113 504 LKLSENKLSG----EIPD-------------------ELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLS 560 (968)
T ss_pred EECcCCccee----eCCh-------------------HHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCccc
Confidence 5555554441 1111 123345667777777777665554443 47888888888888
Q ss_pred cccCCccCCCCCccEEEcCCCCcccccccccccccCCCCCCCCceEecCCccccc
Q psy5670 640 KVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHKNIPDFYIGENPFQCD 694 (1269)
Q Consensus 640 ~~~~~~f~~~~~L~~LdLs~N~l~~l~~~~~~~~~~~~~~~l~~l~l~~Np~~c~ 694 (1269)
+..|..+.++++|+.|++++|++.+.-+..- ....+....+.+||..|.
T Consensus 561 ~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~------~~~~~~~~~~~~n~~lc~ 609 (968)
T PLN00113 561 GEIPKNLGNVESLVQVNISHNHLHGSLPSTG------AFLAINASAVAGNIDLCG 609 (968)
T ss_pred ccCChhHhcCcccCEEeccCCcceeeCCCcc------hhcccChhhhcCCccccC
Confidence 8888888888999999999999886333211 111233345678887774
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=6.3e-47 Score=502.42 Aligned_cols=321 Identities=26% Similarity=0.281 Sum_probs=172.8
Q ss_pred CcccEEEcCCCCCCccCcccCCCCCCCCEEEccCCCCcc-cchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEE
Q psy5670 221 INLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTF-LADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVY 299 (1269)
Q Consensus 221 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~ 299 (1269)
.+++.|+|++|.++...+..|..+++|+.|+|++|.+.+ ++...+.++++|++|++++|++++..+. ..+++|++|+
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~ 146 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLD 146 (968)
T ss_pred CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEE
Confidence 367777777777776666667777777777777777664 3333444677777777777766542221 3356666666
Q ss_pred eeCCcccccCcccccCCCCCCEEECcCCCCCccccCcccccCCCCccEEEcCCCCCcccCchhhcCCCCCcEEEccCCcc
Q psy5670 300 LQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQI 379 (1269)
Q Consensus 300 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 379 (1269)
|++|.+.+..+..++++++|++|++++|.+.+ ..+..+.++++|+.|++++|.+.+..+..+..+++|+.|++++|.+
T Consensus 147 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 224 (968)
T PLN00113 147 LSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVG--KIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNL 224 (968)
T ss_pred CcCCcccccCChHHhcCCCCCEEECccCcccc--cCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCcc
Confidence 66666665555556666666666666666544 2244555566666666666655555555555555555555555555
Q ss_pred cccccccccCCCCCcEEEccCCcccccCcccccCCCCCCEEEccCCCCCccChhhhcCCCCCcEEEccCCCCC-Cchhhh
Q psy5670 380 ESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLT-EIPKVL 458 (1269)
Q Consensus 380 ~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~-~lp~~l 458 (1269)
....+..+..+++|+.|++++|.+.+..+..+.++++|+.|++++|.+.+..+..+.++++|++|++++|.+. .+|..+
T Consensus 225 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~ 304 (968)
T PLN00113 225 SGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELV 304 (968)
T ss_pred CCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhH
Confidence 5444444555555555555555555544545555555555555555555444444445555555555555443 334444
Q ss_pred cCCCCCcEEECCCCCCCccChhhhhccccCCeeeccCCcCCCCChhhhcCCCCCCEEEcCCCccccccccccCCCCCccE
Q psy5670 459 RNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVA 538 (1269)
Q Consensus 459 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~ 538 (1269)
..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+....+..+..+++|+.|++++|++.+..+..+..+++|+.
T Consensus 305 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~ 384 (968)
T PLN00113 305 IQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFK 384 (968)
T ss_pred cCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCE
Confidence 44455555555555444444444444444444444444442222223344444444444444444433333333333444
Q ss_pred EEccccc
Q psy5670 539 IRLDGNY 545 (1269)
Q Consensus 539 L~L~~n~ 545 (1269)
|++++|.
T Consensus 385 L~l~~n~ 391 (968)
T PLN00113 385 LILFSNS 391 (968)
T ss_pred EECcCCE
Confidence 4443333
No 3
>KOG4194|consensus
Probab=100.00 E-value=4.6e-45 Score=403.16 Aligned_cols=425 Identities=28% Similarity=0.398 Sum_probs=346.2
Q ss_pred EEEccCCcccccCcccccCC--CCCCEEEccCCCCCccChhhhcCCCCCcEEEccCCCCCCchhhhcCCCCCcEEECCCC
Q psy5670 395 TLIMSNNKLKRIESNSLDSL--TALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDN 472 (1269)
Q Consensus 395 ~L~Ls~n~l~~~~~~~~~~l--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n 472 (1269)
.|+.+++.+..+....+.+. +.-+.|++++|++..+....|.++++|+++++.+|.++.+|.......+|+.|+|.+|
T Consensus 56 lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N 135 (873)
T KOG4194|consen 56 LLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHN 135 (873)
T ss_pred eeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeecc
Confidence 44555555544332222222 2346799999999999999999999999999999999999987666677999999999
Q ss_pred CCCccChhhhhccccCCeeeccCCcCCCCChhhhcCCCCCCEEEcCCCccccccccccCCCCCccEEEcccccccccC-C
Q psy5670 473 LITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIG-G 551 (1269)
Q Consensus 473 ~i~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~l~-~ 551 (1269)
.|+.+....++.++.|+.||||.|.|.+|+...|..-.++++|+|++|.|+.+..+.|.++.+|..|.|+.|+++.+| .
T Consensus 136 ~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r 215 (873)
T KOG4194|consen 136 LISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQR 215 (873)
T ss_pred ccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHH
Confidence 999999999999999999999999999999888888889999999999999999999999999999999999999998 6
Q ss_pred cCCCCCCCcEEEccCCcCccccccccCCCccEEECCCCCcccccccccccccccccEEEcCCCccccccCCccc--CCcc
Q psy5670 552 LFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIP--HSVE 629 (1269)
Q Consensus 552 ~~~~l~~L~~L~Ls~n~l~~~~~~~lp~~L~~L~Ls~n~l~~~~~~~~l~~~~~L~~LdLs~N~l~~~~~~~~~--~~L~ 629 (1269)
.|..++.|+.|+|..|+|+.... ..+.++.+|+.|.|..|.|..+....+- +.++
T Consensus 216 ~Fk~L~~L~~LdLnrN~irive~-----------------------ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme 272 (873)
T KOG4194|consen 216 SFKRLPKLESLDLNRNRIRIVEG-----------------------LTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKME 272 (873)
T ss_pred Hhhhcchhhhhhccccceeeehh-----------------------hhhcCchhhhhhhhhhcCcccccCcceeeecccc
Confidence 78889999999999988763321 1233444555555555555554433332 4667
Q ss_pred EEEccCcccccccCCccCCCCCccEEEcCCCCcccccccccccccCCCCCCCCceEecCCccccccCChhHHhhcccccc
Q psy5670 630 NLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHKNIPDFYIGENPFQCDCNMQWLQSYSVNKER 709 (1269)
Q Consensus 630 ~L~Ls~N~i~~~~~~~f~~~~~L~~LdLs~N~l~~l~~~~~~~~~~~~~~~l~~l~l~~Np~~c~c~~~~l~~~~~~~~~ 709 (1269)
.|+|+.|+++.+..+.+.+++.|+.|+||+|.|+.|...++.
T Consensus 273 ~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Ws-------------------------------------- 314 (873)
T KOG4194|consen 273 HLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWS-------------------------------------- 314 (873)
T ss_pred eeecccchhhhhhcccccccchhhhhccchhhhheeecchhh--------------------------------------
Confidence 777777777777777777888888888888887765443220
Q ss_pred CCCcccccCccccccccccCCCcccccccCCCccccccccCcccccccccCCCCcccCCCCCCceecCCCCCcceeeecC
Q psy5670 710 NKPNLVDLDTVTCKLLYNRANPAILLKEAHSNQFLCEYETNCAPLCHCCDFDACDCEMTCPNNCTCYHDVSWEANVIDCS 789 (1269)
Q Consensus 710 ~~~~~~~l~~~~c~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cp~~C~c~~~~~~~~~~v~c~ 789 (1269)
| |
T Consensus 315 ---------------------------------f-------------------------t-------------------- 316 (873)
T KOG4194|consen 315 ---------------------------------F-------------------------T-------------------- 316 (873)
T ss_pred ---------------------------------h-------------------------c--------------------
Confidence 0 0
Q ss_pred CCCccccCCCCCCCCCcEEEecCCCCCCcCCCcCCCCCCccEEEccCcCccccccccccCCCCCCEEeCCCCCCcccCc-
Q psy5670 790 TGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRG- 868 (1269)
Q Consensus 790 ~~~l~~~~p~~~p~~~~~l~l~~n~i~~l~~~~f~~~~~L~~L~l~~n~i~~i~~~~f~~l~~L~~L~L~~N~l~~i~~- 868 (1269)
..+++|+|++|+|+.++++.|..+..|++|.|++|.|..+..++|.++++|++|||++|.|+....
T Consensus 317 -------------qkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IED 383 (873)
T KOG4194|consen 317 -------------QKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIED 383 (873)
T ss_pred -------------ccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEec
Confidence 124789999999999999999999999999999999999999999999999999999999987643
Q ss_pred --ccccCCcccCeeecccccCcccChhhhhcCcccceEeccCccceeeecc-cccCCccEEEeeCCcccccCCcHHHHHH
Q psy5670 869 --YEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVW-HLSSQIQSITLTSNPWSCDCDFTEKFRD 945 (1269)
Q Consensus 869 --~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~-~~~~~l~~l~l~~Np~~C~C~~~~~~~~ 945 (1269)
.+|.+|++|+.|.|.+|+|.+|+..+|.+++.|+.|||.+|.|.+|.+. |....|+.|-+..-.|.|||++ .||.+
T Consensus 384 aa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nSssflCDCql-~Wl~q 462 (873)
T KOG4194|consen 384 AAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKELVMNSSSFLCDCQL-KWLAQ 462 (873)
T ss_pred chhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccchhhhhhhcccceEEeccH-HHHHH
Confidence 4699999999999999999999999999999999999999999999999 8444999999999999999996 79999
Q ss_pred HHHhccCCcCccCcceeccCCccceeeee
Q psy5670 946 YLQRSRSSVHDISQIRCMTGSEVGFTIMR 974 (1269)
Q Consensus 946 w~~~~~~~i~~~~~~~C~~p~~~~~~~~~ 974 (1269)
|+....-+ ..-...|++|+...+....
T Consensus 463 Wl~~~~lq--~sv~a~CayPe~Lad~~i~ 489 (873)
T KOG4194|consen 463 WLYRRKLQ--SSVIAKCAYPEPLADQSIV 489 (873)
T ss_pred HHHhcccc--cceeeeccCCcccccceeE
Confidence 99775322 3345699999988664433
No 4
>KOG4194|consensus
Probab=100.00 E-value=6.6e-42 Score=378.24 Aligned_cols=423 Identities=26% Similarity=0.390 Sum_probs=346.5
Q ss_pred CchhhhHHHHHHHhhhhhhhccc--cCCCCCCCcccccccCCcccccCCCCCCCCceEEEEeeecccCcccCCccccccc
Q psy5670 6 GSVFITVLISALGLVSASISKAL--RYQAPDECKWFAVTSEGAEIEVPSAAEPDQEVALVCKLRTINSEIENTNFSIIQA 83 (1269)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~--~~~cp~~C~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~i~~~~~~~~~s~~~~ 83 (1269)
-+.+.+.+++.+-+++.....++ ...||..|.|.++ .+.|....+... +.....-+-|
T Consensus 18 s~s~~~l~~g~~~~~g~vvd~ga~~~~~cpa~c~c~~~-------------------lldcs~~~lea~-~~~~l~g~lp 77 (873)
T KOG4194|consen 18 SRSFDTLLIGLCHCVGNVVDAGAGDLSECPATCPCNTR-------------------LLDCSDRELEAI-DKSRLKGFLP 77 (873)
T ss_pred ccchhhHHHHHHHhcCcccccCCCccccCCCcCCCCce-------------------eeecCccccccc-cccccCCcCc
Confidence 34556666666655443322333 3589999999875 566776666553 2233334558
Q ss_pred cceeEEEEEeCCceeeccCCCchhccCCcccceeEeccccCCCCChhhccCC-ccCceeecccccCCCCccceeccchhh
Q psy5670 84 QYTVRLRIECGDMLFFQSSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGL-RKLKTLTLRTHNTDWSTMSLDISHNVF 162 (1269)
Q Consensus 84 ~~~~~L~L~~~~~~~~~~~i~~~~f~~l~~L~~L~L~~~~i~~i~~~~f~~l-~~L~~L~L~~~~~~~~~~~~~i~~~~f 162 (1269)
..++.|++++|. .+.+....|.++++|+.+++.+|.++.||. |++. .+|+.|+|.+|.+ -.+..+.+
T Consensus 78 ~~t~~LdlsnNk----l~~id~~~f~nl~nLq~v~l~~N~Lt~IP~--f~~~sghl~~L~L~~N~I------~sv~se~L 145 (873)
T KOG4194|consen 78 SQTQTLDLSNNK----LSHIDFEFFYNLPNLQEVNLNKNELTRIPR--FGHESGHLEKLDLRHNLI------SSVTSEEL 145 (873)
T ss_pred cceeeeeccccc----cccCcHHHHhcCCcceeeeeccchhhhccc--ccccccceeEEeeecccc------ccccHHHH
Confidence 889999999999 678889899999999999999999999986 5544 5599999986644 35566677
Q ss_pred hhcCCCCCEEEccCCCCccCCcccCCCCCCCcEEECCCCCCCCCCccccCCCCcccCCCcccEEEcCCCCCCccCcccCC
Q psy5670 163 TDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFS 242 (1269)
Q Consensus 163 ~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 242 (1269)
..++.||.||||.|.|++++...|..-.++++|+|++|.|+++....|.+ +.+|..|.|+.|+++.+|...|.
T Consensus 146 -~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~------lnsL~tlkLsrNrittLp~r~Fk 218 (873)
T KOG4194|consen 146 -SALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDS------LNSLLTLKLSRNRITTLPQRSFK 218 (873)
T ss_pred -HhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccc------cchheeeecccCcccccCHHHhh
Confidence 88999999999999999999988988899999999999999999888876 46899999999999999999999
Q ss_pred CCCCCCEEEccCCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCCcccccCcccccCCCCCCEE
Q psy5670 243 RLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVL 322 (1269)
Q Consensus 243 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 322 (1269)
++++|+.|+|..|.|.....-.|.++++|+.|.|..|++..+..++|..+.++++|+|..|+++.+..+++.++++|+.|
T Consensus 219 ~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L 298 (873)
T KOG4194|consen 219 RLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQL 298 (873)
T ss_pred hcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhh
Confidence 99999999999999988877789999999999999999999999999999999999999999999999999999999999
Q ss_pred ECcCCCCCccccCcccccCCCCccEEEcCCCCCcccCchhhcCCCCCcEEEccCCcccccccccccCCCCCcEEEccCCc
Q psy5670 323 DLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNK 402 (1269)
Q Consensus 323 ~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~ 402 (1269)
+++.|.|.. +......-+++|++|+|++|.++.+++..|..+..|++|.|++|.+..+..++|..+.+|++|+|+.|.
T Consensus 299 ~lS~NaI~r--ih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ 376 (873)
T KOG4194|consen 299 DLSYNAIQR--IHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNE 376 (873)
T ss_pred ccchhhhhe--eecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCe
Confidence 999999987 667888888999999999999999999999999999999999999999988899999999999999998
Q ss_pred ccccC---cccccCCCCCCEEEccCCCCCccChhhhcCCCCCcEEEccCCCCCCc-hhhhcCCCCCcEEECC
Q psy5670 403 LKRIE---SNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEI-PKVLRNLHSLKTLDLG 470 (1269)
Q Consensus 403 l~~~~---~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~Ls 470 (1269)
++... ...|.++++|+.|++.+|++..+...+|.++.+|++|+|.+|.+..+ |.+|..+ .|++|-+.
T Consensus 377 ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 377 LSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMN 447 (873)
T ss_pred EEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhc
Confidence 87653 33466667777777777777777666666666666666666666554 3445554 55555544
No 5
>KOG4237|consensus
Probab=100.00 E-value=1.2e-38 Score=338.91 Aligned_cols=444 Identities=28% Similarity=0.434 Sum_probs=299.9
Q ss_pred EEccCCCCCCCCcccccCCCCCcEEEeeCCcccccCcccccCCCCCCEEECcCCCCCccccCcccccCCCCccEEEcCC-
Q psy5670 274 LNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAY- 352 (1269)
Q Consensus 274 L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~- 352 (1269)
.+.++-.++++|.++ .+.-.+|+|..|.|+.+++++|+.+++|+.|||++|.|+. +.+.+|.++.+|..|.+.+
T Consensus 51 VdCr~~GL~eVP~~L---P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~--I~p~AF~GL~~l~~Lvlyg~ 125 (498)
T KOG4237|consen 51 VDCRGKGLTEVPANL---PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISF--IAPDAFKGLASLLSLVLYGN 125 (498)
T ss_pred EEccCCCcccCcccC---CCcceEEEeccCCcccCChhhccchhhhceecccccchhh--cChHhhhhhHhhhHHHhhcC
Confidence 445555677777654 5667788888888888888888888888888888888877 7788888888888877766
Q ss_pred CCCcccCchhhcCCCCCcEEEccCCcccccccccccCCCCCcEEEccCCcccccCcccccCCCCCCEEEccCCCCCccCh
Q psy5670 353 NKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEE 432 (1269)
Q Consensus 353 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~ 432 (1269)
|+|+.++...|.++.+|+.|.+.-|++..+...+|..+++|..|.+.+|.+..+...+|..+.+++.+.+..|.+...
T Consensus 126 NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icd-- 203 (498)
T KOG4237|consen 126 NKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICD-- 203 (498)
T ss_pred CchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccc--
Confidence 888888888888888888888888888888888888888888888888888877777788888888887777653211
Q ss_pred hhhcCCCCCcEEEccCCCCCCchhhhcCCCCCcEEECCCCCCCccChhhhhcc-ccCC-eeeccCCcCCCCChhhhcCCC
Q psy5670 433 NALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSL-HQLA-GLRLTENNISNISKGVFEKLS 510 (1269)
Q Consensus 433 ~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l-~~L~-~L~Ls~n~l~~i~~~~f~~l~ 510 (1269)
.+++.+..... ..|..+++........+.+.++..+....|... .++. .+....+.....|...|..++
T Consensus 204 ---CnL~wla~~~a------~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~ 274 (498)
T KOG4237|consen 204 ---CNLPWLADDLA------MNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLP 274 (498)
T ss_pred ---cccchhhhHHh------hchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcc
Confidence 11121111100 112222333333334444455555554444322 1221 222233344667777899999
Q ss_pred CCCEEEcCCCccccccccccCCCCCccEEEcccccccccC-CcCCCCCCCcEEEccCCcCccccccccCCCccEEECCCC
Q psy5670 511 VLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIG-GLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGN 589 (1269)
Q Consensus 511 ~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~l~-~~~~~l~~L~~L~Ls~n~l~~~~~~~lp~~L~~L~Ls~n 589 (1269)
+|++|+|++|+|+++..++|.+...+++|.|..|++..+. +.|.++..
T Consensus 275 ~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~------------------------------- 323 (498)
T KOG4237|consen 275 NLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSG------------------------------- 323 (498)
T ss_pred cceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhcccc-------------------------------
Confidence 9999999999999999989888888887777777766543 22222222
Q ss_pred CcccccccccccccccccEEEcCCCccccccCCcccCCccEEEccCcccccccCCccCCCCCccEEEcCCCCcccccccc
Q psy5670 590 QISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTA 669 (1269)
Q Consensus 590 ~l~~~~~~~~l~~~~~L~~LdLs~N~l~~~~~~~~~~~L~~L~Ls~N~i~~~~~~~f~~~~~L~~LdLs~N~l~~l~~~~ 669 (1269)
|+.|+|.+|+|+.+.|.+|..+
T Consensus 324 --------------------------------------L~tL~L~~N~it~~~~~aF~~~-------------------- 345 (498)
T KOG4237|consen 324 --------------------------------------LKTLSLYDNQITTVAPGAFQTL-------------------- 345 (498)
T ss_pred --------------------------------------ceeeeecCCeeEEEeccccccc--------------------
Confidence 2222223333333334444333
Q ss_pred cccccCCCCCCCCceEecCCccccccCChhHHhhccccccCCCcccccCccccccccccCCCcccccccCCCcccccccc
Q psy5670 670 LRISPLPSHKNIPDFYIGENPFQCDCNMQWLQSYSVNKERNKPNLVDLDTVTCKLLYNRANPAILLKEAHSNQFLCEYET 749 (1269)
Q Consensus 670 ~~~~~~~~~~~l~~l~l~~Np~~c~c~~~~l~~~~~~~~~~~~~~~~l~~~~c~~~~~~~~~~~~l~~~~~~~~~~~~~~ 749 (1269)
.+|.++.+-.|||.|+|.+.||..|-.. .- ..+...|+.+. ....+++.++...+|.|..+.
T Consensus 346 ---------~~l~~l~l~~Np~~CnC~l~wl~~Wlr~----~~---~~~~~~Cq~p~--~~~~~~~~dv~~~~~~c~~~e 407 (498)
T KOG4237|consen 346 ---------FSLSTLNLLSNPFNCNCRLAWLGEWLRK----KS---VVGNPRCQSPG--FVRQIPISDVAFGDFRCGGPE 407 (498)
T ss_pred ---------ceeeeeehccCcccCccchHHHHHHHhh----CC---CCCCCCCCCCc--hhccccchhccccccccCCcc
Confidence 3455667778999999999999987541 11 33556787554 356788999999999988432
Q ss_pred CcccccccccCCCCcccCCCCCCceecCCCCCcceeeecCCCCccccCCCCCCCCCcEEEecCCCCCCcCCCcCCCCCCc
Q psy5670 750 NCAPLCHCCDFDACDCEMTCPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKL 829 (1269)
Q Consensus 750 ~~~~~~~~~~~~~~~~~~~cp~~C~c~~~~~~~~~~v~c~~~~l~~~~p~~~p~~~~~l~l~~n~i~~l~~~~f~~~~~L 829 (1269)
+ ..|.-...||..|+|. ..+|.||+.+++.+ |+++|.+++++|+++|.++.++... +.+|
T Consensus 408 e----------~~~~~s~~cP~~c~c~------~tVvRcSnk~lk~l-p~~iP~d~telyl~gn~~~~vp~~~---~~~l 467 (498)
T KOG4237|consen 408 E----------LGCLTSSPCPPPCTCL------DTVVRCSNKLLKLL-PRGIPVDVTELYLDGNAITSVPDEL---LRSL 467 (498)
T ss_pred c----------cCCCCCCCCCCCcchh------hhhHhhcccchhhc-CCCCCchhHHHhcccchhcccCHHH---Hhhh
Confidence 2 2345567899999995 57899999999988 9999999999999999999998652 3334
Q ss_pred cEEEccCcCccccccccccCCCCCCEEeCCCC
Q psy5670 830 QILFLNSSHVETIHNKTFNGLKELIILRLDDN 861 (1269)
Q Consensus 830 ~~L~l~~n~i~~i~~~~f~~l~~L~~L~L~~N 861 (1269)
.+++++|+|..+...+|.++++|.+|.|++|
T Consensus 468 -~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 468 -LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred -hcccccCceehhhcccccchhhhheeEEecC
Confidence 4555555555555555555555555544443
No 6
>KOG0472|consensus
Probab=99.98 E-value=2.8e-36 Score=320.58 Aligned_cols=475 Identities=26% Similarity=0.375 Sum_probs=273.8
Q ss_pred CCCcEEECCCCCCCCCCccccCCCCcccCCCcccEEEcCCCCCCccCcccCCCCCCCCEEEccCCCCcccchhhhcCCCC
Q psy5670 191 QSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNS 270 (1269)
Q Consensus 191 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 270 (1269)
.-|+.|.+++|.+..+.+. ...+..|.+|++++|++..+|+ +++.+..++.|+.++|.+..+++ .+..+.+
T Consensus 45 v~l~~lils~N~l~~l~~d-------l~nL~~l~vl~~~~n~l~~lp~-aig~l~~l~~l~vs~n~ls~lp~-~i~s~~~ 115 (565)
T KOG0472|consen 45 VDLQKLILSHNDLEVLRED-------LKNLACLTVLNVHDNKLSQLPA-AIGELEALKSLNVSHNKLSELPE-QIGSLIS 115 (565)
T ss_pred cchhhhhhccCchhhccHh-------hhcccceeEEEeccchhhhCCH-HHHHHHHHHHhhcccchHhhccH-HHhhhhh
Confidence 3455555555554443221 2234455555555555555554 25555555555555555555532 3455555
Q ss_pred CcEEEccCCCCCCCCcccccCCCCCcEEEeeCCcccccCcccccCCCCCCEEECcCCCCCccccCcccccCCCCccEEEc
Q psy5670 271 LTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNI 350 (1269)
Q Consensus 271 L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L 350 (1269)
|+.|++++|.+..++++. +.+..|+.++..+|+++..+++ +.++.+|..+++.+|.+.. .++..+. ++.|++|+.
T Consensus 116 l~~l~~s~n~~~el~~~i-~~~~~l~dl~~~~N~i~slp~~-~~~~~~l~~l~~~~n~l~~--l~~~~i~-m~~L~~ld~ 190 (565)
T KOG0472|consen 116 LVKLDCSSNELKELPDSI-GRLLDLEDLDATNNQISSLPED-MVNLSKLSKLDLEGNKLKA--LPENHIA-MKRLKHLDC 190 (565)
T ss_pred hhhhhccccceeecCchH-HHHhhhhhhhccccccccCchH-HHHHHHHHHhhccccchhh--CCHHHHH-HHHHHhccc
Confidence 555555555555555443 3345555555555555555433 3445555555555555544 2222222 555555555
Q ss_pred CCCCCcccCchhhcCCCCCcEEEccCCcccccccccccCCCCCcEEEccCCcccccCcccccCCCCCCEEEccCCCCCcc
Q psy5670 351 AYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYI 430 (1269)
Q Consensus 351 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~ 430 (1269)
..|.+..++++ ++.+.+|..|++..|++..+| .|.++..|++|+++.|++..++.....++++|..|||.+|++...
T Consensus 191 ~~N~L~tlP~~-lg~l~~L~~LyL~~Nki~~lP--ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~ 267 (565)
T KOG0472|consen 191 NSNLLETLPPE-LGGLESLELLYLRRNKIRFLP--EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEV 267 (565)
T ss_pred chhhhhcCChh-hcchhhhHHHHhhhcccccCC--CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccC
Confidence 55555555443 455555555555555555554 255555555555555555555544445555555555555555554
Q ss_pred ChhhhcCCCCCcEEEccCCCCCCchhhhcCCCCCcEEECCCCCCCccChhhhhc-----cccCCe----eeccCCcC---
Q psy5670 431 EENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNS-----LHQLAG----LRLTENNI--- 498 (1269)
Q Consensus 431 ~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~-----l~~L~~----L~Ls~n~l--- 498 (1269)
+.+ +.-+.+|+.||+++|.++.+|..++++ .|+.|-+.+|.+..+...-+.. ++.|+. =.++...-
T Consensus 268 Pde-~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e 345 (565)
T KOG0472|consen 268 PDE-ICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTE 345 (565)
T ss_pred chH-HHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCccccc
Confidence 432 333455555555555555555555555 5555555555544332211110 001110 00000000
Q ss_pred --CCCChhhhc---CCCCCCEEEcCCCccccccccccCCC--CCccEEEcccccccccCCcCCCCCCC-cEEEccCCcCc
Q psy5670 499 --SNISKGVFE---KLSVLTILNLASNKIQKVEAGTFDNN--SNLVAIRLDGNYLTDIGGLFPKLPNL-VWLNISENLLE 570 (1269)
Q Consensus 499 --~~i~~~~f~---~l~~L~~L~Ls~n~i~~~~~~~~~~~--~~L~~L~L~~n~l~~l~~~~~~l~~L-~~L~Ls~n~l~ 570 (1269)
.+.+...|. ...+.+.|++++-+++.++.+.|..- .-...++++.|++.++|..+..+..+ ..+.+++|.++
T Consensus 346 ~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~is 425 (565)
T KOG0472|consen 346 TAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKIS 425 (565)
T ss_pred ccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccc
Confidence 000111111 23467788888888888877766542 23677888888888888766655444 34566677666
Q ss_pred cccccc-cCCCccEEECCCCCcccccccccccccccccEEEcCCCccccccCC-cccCCccEEEccCcccccccCCccCC
Q psy5670 571 WFDYAL-IPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGN-AIPHSVENLFLTNNLISKVQPYTFFM 648 (1269)
Q Consensus 571 ~~~~~~-lp~~L~~L~Ls~n~l~~~~~~~~l~~~~~L~~LdLs~N~l~~~~~~-~~~~~L~~L~Ls~N~i~~~~~~~f~~ 648 (1269)
+.+... .-+.|..|++++|-+.++|. .++.+..|++||+|.|++..++.. ..+..++.+-.++|++..+.+..+.+
T Consensus 426 fv~~~l~~l~kLt~L~L~NN~Ln~LP~--e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~n 503 (565)
T KOG0472|consen 426 FVPLELSQLQKLTFLDLSNNLLNDLPE--EMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKN 503 (565)
T ss_pred cchHHHHhhhcceeeecccchhhhcch--hhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhh
Confidence 544321 22478889999999988886 344566799999999988766542 22346777777889999999988999
Q ss_pred CCCccEEEcCCCCcccccccccccccCCCCCCCCceEecCCccc
Q psy5670 649 KPNLTRVDLVGNRLKNINQTALRISPLPSHKNIPDFYIGENPFQ 692 (1269)
Q Consensus 649 ~~~L~~LdLs~N~l~~l~~~~~~~~~~~~~~~l~~l~l~~Np~~ 692 (1269)
+.+|+.|||.+|.|..+|+. +..+.+++.+.+.||||.
T Consensus 504 m~nL~tLDL~nNdlq~IPp~------LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 504 MRNLTTLDLQNNDLQQIPPI------LGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hhhcceeccCCCchhhCChh------hccccceeEEEecCCccC
Confidence 99999999999999999884 357788999999999974
No 7
>KOG4237|consensus
Probab=99.97 E-value=5.4e-33 Score=295.93 Aligned_cols=318 Identities=29% Similarity=0.493 Sum_probs=206.3
Q ss_pred CCeeeccCCcCCCCChhhhcCCCCCCEEEcCCCccccccccccCCCCCccEEEccc-ccccccC-CcCCCCCCCcEEEcc
Q psy5670 488 LAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDG-NYLTDIG-GLFPKLPNLVWLNIS 565 (1269)
Q Consensus 488 L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~L~~-n~l~~l~-~~~~~l~~L~~L~Ls 565 (1269)
-.+++|..|+|+.||+++|+.+++|+.|||++|+|+.|.+.+|.++.+|.+|.+.+ |+|+++| +.|.++.+|+
T Consensus 69 tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slq----- 143 (498)
T KOG4237|consen 69 TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQ----- 143 (498)
T ss_pred ceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHH-----
Confidence 45666666666667777777777777777777777777777776666665555444 5555554 3343333332
Q ss_pred CCcCccccccccCCCccEEECCCCCcccccccccccccccccEEEcCCCccccccCCcccCCccEEEccCcccccccCCc
Q psy5670 566 ENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYT 645 (1269)
Q Consensus 566 ~n~l~~~~~~~lp~~L~~L~Ls~n~l~~~~~~~~l~~~~~L~~LdLs~N~l~~~~~~~~~~~L~~L~Ls~N~i~~~~~~~ 645 (1269)
.|.+.-|++..+....
T Consensus 144 ----------------------------------------------------------------rLllNan~i~Cir~~a 159 (498)
T KOG4237|consen 144 ----------------------------------------------------------------RLLLNANHINCIRQDA 159 (498)
T ss_pred ----------------------------------------------------------------HHhcChhhhcchhHHH
Confidence 2333334444444556
Q ss_pred cCCCCCccEEEcCCCCcccccccccccccCCCCCCCCceEecCCccccccCChhHHhhccccccCCCcccccCccccccc
Q psy5670 646 FFMKPNLTRVDLVGNRLKNINQTALRISPLPSHKNIPDFYIGENPFQCDCNMQWLQSYSVNKERNKPNLVDLDTVTCKLL 725 (1269)
Q Consensus 646 f~~~~~L~~LdLs~N~l~~l~~~~~~~~~~~~~~~l~~l~l~~Np~~c~c~~~~l~~~~~~~~~~~~~~~~l~~~~c~~~ 725 (1269)
|..+++|..|.+..|.++.+...+|+ ....++.+.+..|||.|||++.|+.++... .....+...|..+
T Consensus 160 l~dL~~l~lLslyDn~~q~i~~~tf~-----~l~~i~tlhlA~np~icdCnL~wla~~~a~------~~ietsgarc~~p 228 (498)
T KOG4237|consen 160 LRDLPSLSLLSLYDNKIQSICKGTFQ-----GLAAIKTLHLAQNPFICDCNLPWLADDLAM------NPIETSGARCVSP 228 (498)
T ss_pred HHHhhhcchhcccchhhhhhcccccc-----chhccchHhhhcCccccccccchhhhHHhh------chhhcccceecch
Confidence 66677777777777777777666553 455677788999999999999999875430 0111223334332
Q ss_pred cccCCCcccccccCCCccccccccCcccccccccCCCCcccCCCCCCceecCCCCCcceeeecCCCCccccCCCCCCCCC
Q psy5670 726 YNRANPAILLKEAHSNQFLCEYETNCAPLCHCCDFDACDCEMTCPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDA 805 (1269)
Q Consensus 726 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cp~~C~c~~~~~~~~~~v~c~~~~l~~~~p~~~p~~~ 805 (1269)
+. .....+..++...|.|..+. + |..
T Consensus 229 ~r--l~~~Ri~q~~a~kf~c~~es----------------------------------------------l-~s~----- 254 (498)
T KOG4237|consen 229 YR--LYYKRINQEDARKFLCSLES----------------------------------------------L-PSR----- 254 (498)
T ss_pred HH--HHHHHhcccchhhhhhhHHh----------------------------------------------H-HHh-----
Confidence 21 11122222333333332110 0 000
Q ss_pred cEEEecCCCCCCcCCCcCCCCCCccEEEccCcCccccccccccCCCCCCEEeCCCCCCcccCcccccCCcccCeeecccc
Q psy5670 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYN 885 (1269)
Q Consensus 806 ~~l~l~~n~i~~l~~~~f~~~~~L~~L~l~~n~i~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N 885 (1269)
+....+....-+..+|.+|++|++|+|++|+|+.|...+|.++..+++|+|..|
T Consensus 255 --------------------------~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N 308 (498)
T KOG4237|consen 255 --------------------------LSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRN 308 (498)
T ss_pred --------------------------hccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcc
Confidence 000111111223345777888888888888888888888888888888888888
Q ss_pred cCcccChhhhhcCcccceEeccCccceeeecc-c-ccCCccEEEeeCCcccccCCcHHHHHHHHHhccCCcCccCcceec
Q psy5670 886 KIIYISNRTFLSLTHLKVLQLDHNRITSFAVW-H-LSSQIQSITLTSNPWSCDCDFTEKFRDYLQRSRSSVHDISQIRCM 963 (1269)
Q Consensus 886 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~-~-~~~~l~~l~l~~Np~~C~C~~~~~~~~w~~~~~~~i~~~~~~~C~ 963 (1269)
+|..+...+|.++..|++|+|.+|+|+.+.+. | ...+|.+|.|-+|||.|+|.+ .|+..|++.+. . .++.+|.
T Consensus 309 ~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l-~wl~~Wlr~~~-~---~~~~~Cq 383 (498)
T KOG4237|consen 309 KLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRL-AWLGEWLRKKS-V---VGNPRCQ 383 (498)
T ss_pred hHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccch-HHHHHHHhhCC-C---CCCCCCC
Confidence 88888888888888888888888888888887 6 677889999999999999997 79999999875 2 3568999
Q ss_pred cCCccce
Q psy5670 964 TGSEVGF 970 (1269)
Q Consensus 964 ~p~~~~~ 970 (1269)
.|..+++
T Consensus 384 ~p~~~~~ 390 (498)
T KOG4237|consen 384 SPGFVRQ 390 (498)
T ss_pred CCchhcc
Confidence 9988754
No 8
>KOG0472|consensus
Probab=99.97 E-value=7.5e-35 Score=309.75 Aligned_cols=454 Identities=25% Similarity=0.371 Sum_probs=232.2
Q ss_pred cceeEEEEEeCCceeeccCCCchhccCCcccceeEeccccCCCCChhhccCCccCceeecccccCCCCccceeccchhhh
Q psy5670 84 QYTVRLRIECGDMLFFQSSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHNVFT 163 (1269)
Q Consensus 84 ~~~~~L~L~~~~~~~~~~~i~~~~f~~l~~L~~L~L~~~~i~~i~~~~f~~l~~L~~L~L~~~~~~~~~~~~~i~~~~f~ 163 (1269)
..+++|++.+|. ...+|+ +++.+..++.|+.+.|++..+|+ .++.+.+|+.|+++++.. .++ ++.+
T Consensus 68 ~~l~vl~~~~n~----l~~lp~-aig~l~~l~~l~vs~n~ls~lp~-~i~s~~~l~~l~~s~n~~------~el-~~~i- 133 (565)
T KOG0472|consen 68 ACLTVLNVHDNK----LSQLPA-AIGELEALKSLNVSHNKLSELPE-QIGSLISLVKLDCSSNEL------KEL-PDSI- 133 (565)
T ss_pred cceeEEEeccch----hhhCCH-HHHHHHHHHHhhcccchHhhccH-HHhhhhhhhhhhccccce------eec-CchH-
Confidence 334555555555 344444 45555555555555555555544 344555555555543321 111 2334
Q ss_pred hcCCCCCEEEccCCCCccCCcccCCCCCCCcEEECCCCCCCCCCccccCCCCcccCCCcccEEEcCCCCCCccCcccCCC
Q psy5670 164 DELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSR 243 (1269)
Q Consensus 164 ~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 243 (1269)
+.+..|+.|+..+|++.++|+++ ..+.+|..|++.+|+++..++.... +..|++||...|.++.+|++ ++.
T Consensus 134 ~~~~~l~dl~~~~N~i~slp~~~-~~~~~l~~l~~~~n~l~~l~~~~i~-------m~~L~~ld~~~N~L~tlP~~-lg~ 204 (565)
T KOG0472|consen 134 GRLLDLEDLDATNNQISSLPEDM-VNLSKLSKLDLEGNKLKALPENHIA-------MKRLKHLDCNSNLLETLPPE-LGG 204 (565)
T ss_pred HHHhhhhhhhccccccccCchHH-HHHHHHHHhhccccchhhCCHHHHH-------HHHHHhcccchhhhhcCChh-hcc
Confidence 45555555555555555555542 4455555555555555555443332 24555555555555555543 555
Q ss_pred CCCCCEEEccCCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCCcccccCcccccCCCCCCEEE
Q psy5670 244 LSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLD 323 (1269)
Q Consensus 244 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 323 (1269)
+.+|.-|++..|.+...+ .|.++..|++|.++.|+|..+|......+++|..|+|..|+++..+.+ +.-+.+|+.||
T Consensus 205 l~~L~~LyL~~Nki~~lP--ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde-~clLrsL~rLD 281 (565)
T KOG0472|consen 205 LESLELLYLRRNKIRFLP--EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDE-ICLLRSLERLD 281 (565)
T ss_pred hhhhHHHHhhhcccccCC--CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchH-HHHhhhhhhhc
Confidence 555555555555555554 355555555555555555555555555555555555555555554432 23445555555
Q ss_pred CcCCCCCccccCcccccCCCCccEEEcCCCCCcccCchhhcCC-----CCCcE----EEccCCc---cc--ccccccc--
Q psy5670 324 LSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDL-----YRLQV----LHLENNQ---IE--SIHRNTF-- 387 (1269)
Q Consensus 324 L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-----~~L~~----L~Ls~n~---l~--~i~~~~f-- 387 (1269)
+++|.++. + +..++++ +|+.|-+.+|.+..+..+.+..- +.|+. =.++... -+ ..+.+.|
T Consensus 282 lSNN~is~--L-p~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~ 357 (565)
T KOG0472|consen 282 LSNNDISS--L-PYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPD 357 (565)
T ss_pred ccCCcccc--C-Ccccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccc
Confidence 55555554 1 4445555 55555555554443322221110 00100 0000000 00 0001111
Q ss_pred -cCCCCCcEEEccCCcccccCcccccCCC--CCCEEEccCCCCCccChhhhcCCCC-CcEEEccCCCCCCchhhhcCCCC
Q psy5670 388 -ASLSNLHTLIMSNNKLKRIESNSLDSLT--ALSVLSLDNNELEYIEENALKNSTS-LQDFHLNGNKLTEIPKVLRNLHS 463 (1269)
Q Consensus 388 -~~l~~L~~L~Ls~n~l~~~~~~~~~~l~--~L~~L~Ls~n~i~~~~~~~~~~l~~-L~~L~Ls~n~l~~lp~~l~~l~~ 463 (1269)
....+.+.|++++-+++.++...|..-. -....+++.|++.+++.. +..+.. ++.+.+++|.+.-+|..+..+++
T Consensus 358 ~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~-L~~lkelvT~l~lsnn~isfv~~~l~~l~k 436 (565)
T KOG0472|consen 358 IYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKR-LVELKELVTDLVLSNNKISFVPLELSQLQK 436 (565)
T ss_pred hhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhh-hHHHHHHHHHHHhhcCccccchHHHHhhhc
Confidence 1223344555555555555444443221 244555555555544332 111111 22344455555555555666666
Q ss_pred CcEEECCCCCCCccChhhhhccccCCeeeccCCcCCCCChhhhcCCCCCCEEEcCCCccccccccccCCCCCccEEEccc
Q psy5670 464 LKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDG 543 (1269)
Q Consensus 464 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~L~~ 543 (1269)
|..|++++|.+.+++. .++.+..|+.|+++.|++..+|.. ...+..|+.+-.++|++..+++..+.++.+|..|||.+
T Consensus 437 Lt~L~L~NN~Ln~LP~-e~~~lv~Lq~LnlS~NrFr~lP~~-~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~n 514 (565)
T KOG0472|consen 437 LTFLDLSNNLLNDLPE-EMGSLVRLQTLNLSFNRFRMLPEC-LYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQN 514 (565)
T ss_pred ceeeecccchhhhcch-hhhhhhhhheecccccccccchHH-HhhHHHHHHHHhccccccccChHHhhhhhhcceeccCC
Confidence 7777777666665543 345556677777777766666643 23344455555666777777766677777777777777
Q ss_pred ccccccCCcCCCCCCCcEEEccCCcCc
Q psy5670 544 NYLTDIGGLFPKLPNLVWLNISENLLE 570 (1269)
Q Consensus 544 n~l~~l~~~~~~l~~L~~L~Ls~n~l~ 570 (1269)
|.+..+|+.++++++|++|++++|.++
T Consensus 515 Ndlq~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 515 NDLQQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred CchhhCChhhccccceeEEEecCCccC
Confidence 777777777777777777777777665
No 9
>KOG0618|consensus
Probab=99.96 E-value=6.3e-32 Score=315.96 Aligned_cols=461 Identities=28% Similarity=0.305 Sum_probs=232.3
Q ss_pred CCCCCEEEccCCCCccCCcccCCCCCCCcEEECCCCCCCCCCccccCCCCcccCCCcccEEEcCCCCCCccCcccCCCCC
Q psy5670 166 LQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLS 245 (1269)
Q Consensus 166 l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 245 (1269)
.-+|+.||+++|.+...|..+ ..+.+|+.|+++.|.+...+.. ...+.+|++|.|..|.+..+|. .+..++
T Consensus 44 ~v~L~~l~lsnn~~~~fp~~i-t~l~~L~~ln~s~n~i~~vp~s-------~~~~~~l~~lnL~~n~l~~lP~-~~~~lk 114 (1081)
T KOG0618|consen 44 RVKLKSLDLSNNQISSFPIQI-TLLSHLRQLNLSRNYIRSVPSS-------CSNMRNLQYLNLKNNRLQSLPA-SISELK 114 (1081)
T ss_pred eeeeEEeeccccccccCCchh-hhHHHHhhcccchhhHhhCchh-------hhhhhcchhheeccchhhcCch-hHHhhh
Confidence 334666666666665555543 5555566666666655555411 1224555666666555555543 355556
Q ss_pred CCCEEEccCCCCcccchhhhcCCCCCcEEEccCC-CCCCCCcccccCCCCCcEEEeeCCcccccCcccccCCCCCCEEEC
Q psy5670 246 RLQELYLQGNILTFLADHALDGLNSLTVLNLSVN-NLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDL 324 (1269)
Q Consensus 246 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 324 (1269)
+|+.|+++.|.+..++ ..+..++.++.++.++| ++..++. .. ++.+++..|.+.+........++. .|+|
T Consensus 115 nl~~LdlS~N~f~~~P-l~i~~lt~~~~~~~s~N~~~~~lg~-----~~-ik~~~l~~n~l~~~~~~~i~~l~~--~ldL 185 (1081)
T KOG0618|consen 115 NLQYLDLSFNHFGPIP-LVIEVLTAEEELAASNNEKIQRLGQ-----TS-IKKLDLRLNVLGGSFLIDIYNLTH--QLDL 185 (1081)
T ss_pred cccccccchhccCCCc-hhHHhhhHHHHHhhhcchhhhhhcc-----cc-chhhhhhhhhcccchhcchhhhhe--eeec
Confidence 6666666665555543 23445555555555555 1212211 11 444555544444433333333333 3555
Q ss_pred cCCCCCccccCcccccCCCCccEEEcCCCCCcccCchhhcCCCCCcEEEccCCcccccccccccCCCCCcEEEccCCccc
Q psy5670 325 SNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLK 404 (1269)
Q Consensus 325 ~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~ 404 (1269)
.+|.+. ...+..+.+|+.|....|++..+.. .-++|+.|+.+.|.++.+... ..-.+|++++++.|+++
T Consensus 186 r~N~~~-----~~dls~~~~l~~l~c~rn~ls~l~~----~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~ 254 (1081)
T KOG0618|consen 186 RYNEME-----VLDLSNLANLEVLHCERNQLSELEI----SGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLS 254 (1081)
T ss_pred ccchhh-----hhhhhhccchhhhhhhhcccceEEe----cCcchheeeeccCcceeeccc--cccccceeeecchhhhh
Confidence 555543 1223444555555555555444322 124555555555555433221 12234555555555555
Q ss_pred ccCcccccCCCCCCEEEccCCCCCccChhhhcCCCCCcEEEccCCCCCCchhhhcCCCCCcEEECCCCCCCccChhhhhc
Q psy5670 405 RIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNS 484 (1269)
Q Consensus 405 ~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~ 484 (1269)
.+. .++..+.+|+.+...+|.+..++. .+...++|+.|.+..|.+..+|.....++.|++|+|..|++...++..+.-
T Consensus 255 ~lp-~wi~~~~nle~l~~n~N~l~~lp~-ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v 332 (1081)
T KOG0618|consen 255 NLP-EWIGACANLEALNANHNRLVALPL-RISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAV 332 (1081)
T ss_pred cch-HHHHhcccceEecccchhHHhhHH-HHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhh
Confidence 554 455555555555555555543332 233445555555555555555555555555555555555555555544433
Q ss_pred ccc-CCeeeccCCcCCCCChhhhcCCCCCCEEEcCCCccccccccccCCCCCccEEEcccccccccC-CcCCCCCCCcEE
Q psy5670 485 LHQ-LAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIG-GLFPKLPNLVWL 562 (1269)
Q Consensus 485 l~~-L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~l~-~~~~~l~~L~~L 562 (1269)
... |..|..+.|.+...+...=...+.|+.|.+.+|.++.-....+.+...|+.|+|++|++.++| ..+.++..|+.|
T Consensus 333 ~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL 412 (1081)
T KOG0618|consen 333 LNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEEL 412 (1081)
T ss_pred hhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHH
Confidence 332 455555555554444322223344555555555555544444555555555555555555555 334555555555
Q ss_pred EccCCcCcccccccc-CCCccEEECCCCCcccccccccccccccccEEEcCCCcccccc-CCccc-CCccEEEccCcccc
Q psy5670 563 NISENLLEWFDYALI-PADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELT-GNAIP-HSVENLFLTNNLIS 639 (1269)
Q Consensus 563 ~Ls~n~l~~~~~~~l-p~~L~~L~Ls~n~l~~~~~~~~l~~~~~L~~LdLs~N~l~~~~-~~~~~-~~L~~L~Ls~N~i~ 639 (1269)
++|+|+++.++.... -..|++|...+|++..+|. +..++.|+.+|+|.|+++.+. +...| ++|++|||++|.-.
T Consensus 413 ~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fPe---~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 413 NLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFPE---LAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRL 489 (1081)
T ss_pred hcccchhhhhhHHHHhhhhhHHHhhcCCceeechh---hhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCccc
Confidence 555555554432111 1245555556666655553 334556777777777776543 34455 57777777777543
Q ss_pred cccCCccCCCCCccEEEcCCC
Q psy5670 640 KVQPYTFFMKPNLTRVDLVGN 660 (1269)
Q Consensus 640 ~~~~~~f~~~~~L~~LdLs~N 660 (1269)
...-..|..+.++...++.-|
T Consensus 490 ~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 490 VFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred ccchhhhHHhhhhhheecccC
Confidence 333344555555555555544
No 10
>KOG0618|consensus
Probab=99.96 E-value=1.2e-31 Score=313.75 Aligned_cols=467 Identities=27% Similarity=0.337 Sum_probs=369.4
Q ss_pred CCEEEccCCCCccCCcccCCCCCCCcEEECCCCCCCCCCccccCCCCcccCCCcccEEEcCCCCCCccCcccCCCCCCCC
Q psy5670 169 LESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQ 248 (1269)
Q Consensus 169 L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 248 (1269)
+..|+++.|.+...|-....+.-+|+.|++++|++...+.. +..+.+|+.|+++.|.+..++ .+..++.+|+
T Consensus 23 ~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~~fp~~-------it~l~~L~~ln~s~n~i~~vp-~s~~~~~~l~ 94 (1081)
T KOG0618|consen 23 LQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQISSFPIQ-------ITLLSHLRQLNLSRNYIRSVP-SSCSNMRNLQ 94 (1081)
T ss_pred HHhhhccccccccCchHHhhheeeeEEeeccccccccCCch-------hhhHHHHhhcccchhhHhhCc-hhhhhhhcch
Confidence 66777777777666654445566699999999998876532 223578999999999999988 4588899999
Q ss_pred EEEccCCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCCcccccCcccccCCCCCCEEECcCCC
Q psy5670 249 ELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNE 328 (1269)
Q Consensus 249 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 328 (1269)
+|.|.+|.+... |..+..+.+|+.|++++|.+..+|.-+ ..+..+..+..++|..... ++... ++.+++..|.
T Consensus 95 ~lnL~~n~l~~l-P~~~~~lknl~~LdlS~N~f~~~Pl~i-~~lt~~~~~~~s~N~~~~~----lg~~~-ik~~~l~~n~ 167 (1081)
T KOG0618|consen 95 YLNLKNNRLQSL-PASISELKNLQYLDLSFNHFGPIPLVI-EVLTAEEELAASNNEKIQR----LGQTS-IKKLDLRLNV 167 (1081)
T ss_pred hheeccchhhcC-chhHHhhhcccccccchhccCCCchhH-HhhhHHHHHhhhcchhhhh----hcccc-chhhhhhhhh
Confidence 999999888766 457889999999999999999888654 5577888888888822221 22222 7778888877
Q ss_pred CCccccCcccccCCCCccEEEcCCCCCcccCchhhcCCCCCcEEEccCCcccccccccccCCCCCcEEEccCCcccccCc
Q psy5670 329 LTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIES 408 (1269)
Q Consensus 329 l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~ 408 (1269)
+.+.. ......+.. .|+|.+|.+... .+..+.+|+.|....|++..+.. .-++|+.|+.+.|.++....
T Consensus 168 l~~~~--~~~i~~l~~--~ldLr~N~~~~~---dls~~~~l~~l~c~rn~ls~l~~----~g~~l~~L~a~~n~l~~~~~ 236 (1081)
T KOG0618|consen 168 LGGSF--LIDIYNLTH--QLDLRYNEMEVL---DLSNLANLEVLHCERNQLSELEI----SGPSLTALYADHNPLTTLDV 236 (1081)
T ss_pred cccch--hcchhhhhe--eeecccchhhhh---hhhhccchhhhhhhhcccceEEe----cCcchheeeeccCcceeecc
Confidence 76532 333444444 599999988732 35678899999999999887753 34789999999999885433
Q ss_pred ccccCCCCCCEEEccCCCCCccChhhhcCCCCCcEEEccCCCCCCchhhhcCCCCCcEEECCCCCCCccChhhhhccccC
Q psy5670 409 NSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQL 488 (1269)
Q Consensus 409 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L 488 (1269)
. ....+|++++++.|+++.++ .++..+.+|+.++..+|.++.+|..+...++|+.|.+..|.+..+++ ....++.|
T Consensus 237 ~--p~p~nl~~~dis~n~l~~lp-~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~-~le~~~sL 312 (1081)
T KOG0618|consen 237 H--PVPLNLQYLDISHNNLSNLP-EWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPP-FLEGLKSL 312 (1081)
T ss_pred c--cccccceeeecchhhhhcch-HHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCC-ccccccee
Confidence 2 23358999999999999988 89999999999999999999999999999999999999999998876 35678999
Q ss_pred CeeeccCCcCCCCChhhhcCCCC-CCEEEcCCCccccccccccCCCCCccEEEccccccccc-CCcCCCCCCCcEEEccC
Q psy5670 489 AGLRLTENNISNISKGVFEKLSV-LTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDI-GGLFPKLPNLVWLNISE 566 (1269)
Q Consensus 489 ~~L~Ls~n~l~~i~~~~f~~l~~-L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~l-~~~~~~l~~L~~L~Ls~ 566 (1269)
++|+|..|.+..+|...|.-... |..|+.+.|++...+...=.....|+.|.+.+|.+++- -+.+.+..+|+.|+|++
T Consensus 313 ~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsy 392 (1081)
T KOG0618|consen 313 RTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSY 392 (1081)
T ss_pred eeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecc
Confidence 99999999999999877776665 88899999998877643334567899999999999963 25677889999999999
Q ss_pred CcCccccccccC--CCccEEECCCCCcccccccccccccccccEEEcCCCccccccCCcccCCccEEEccCcccccccCC
Q psy5670 567 NLLEWFDYALIP--ADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPY 644 (1269)
Q Consensus 567 n~l~~~~~~~lp--~~L~~L~Ls~n~l~~~~~~~~l~~~~~L~~LdLs~N~l~~~~~~~~~~~L~~L~Ls~N~i~~~~~~ 644 (1269)
|++..|+...+- +.|+.|+||||+++.++. .+..+..|++|..-+|+|..++.....+.|+.+|++.|+++.+.-.
T Consensus 393 NrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~--tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS~N~L~~~~l~ 470 (1081)
T KOG0618|consen 393 NRLNSFPASKLRKLEELEELNLSGNKLTTLPD--TVANLGRLHTLRAHSNQLLSFPELAQLPQLKVLDLSCNNLSEVTLP 470 (1081)
T ss_pred cccccCCHHHHhchHHhHHHhcccchhhhhhH--HHHhhhhhHHHhhcCCceeechhhhhcCcceEEecccchhhhhhhh
Confidence 999988775544 478999999999999885 5567889999999999999888666667999999999999865432
Q ss_pred ccCCCCCccEEEcCCCCcccccc
Q psy5670 645 TFFMKPNLTRVDLVGNRLKNINQ 667 (1269)
Q Consensus 645 ~f~~~~~L~~LdLs~N~l~~l~~ 667 (1269)
.-..-++|++||++||.=..++.
T Consensus 471 ~~~p~p~LkyLdlSGN~~l~~d~ 493 (1081)
T KOG0618|consen 471 EALPSPNLKYLDLSGNTRLVFDH 493 (1081)
T ss_pred hhCCCcccceeeccCCcccccch
Confidence 22223899999999997443433
No 11
>KOG0444|consensus
Probab=99.94 E-value=1.2e-28 Score=274.23 Aligned_cols=337 Identities=28% Similarity=0.406 Sum_probs=208.1
Q ss_pred CCcccEEEcCCCCCCccCcccCCCCCCCCEEEccCCCCcccchhhhcCCCCCcEEEccCCCCC--CCCcccccCCCCCcE
Q psy5670 220 GINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLV--NIPPELFNQSRDLKE 297 (1269)
Q Consensus 220 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~--~l~~~~f~~l~~L~~ 297 (1269)
+++++.|.|...++..+|. .++.+.+|++|.+++|++..+. +.+..++.|+.+.+..|++. ++|+++|. +..|+.
T Consensus 31 Mt~~~WLkLnrt~L~~vPe-EL~~lqkLEHLs~~HN~L~~vh-GELs~Lp~LRsv~~R~N~LKnsGiP~diF~-l~dLt~ 107 (1255)
T KOG0444|consen 31 MTQMTWLKLNRTKLEQVPE-ELSRLQKLEHLSMAHNQLISVH-GELSDLPRLRSVIVRDNNLKNSGIPTDIFR-LKDLTI 107 (1255)
T ss_pred hhheeEEEechhhhhhChH-HHHHHhhhhhhhhhhhhhHhhh-hhhccchhhHHHhhhccccccCCCCchhcc-ccccee
Confidence 3455555555555555543 3555666666666666655543 34555666666666666543 45555543 556666
Q ss_pred EEeeCCcccccCcccccCCCCCCEEECcCCCCCccccCcccccCCCCccEEEcCCCCCcccCchhhcCCCCCcEEEccCC
Q psy5670 298 VYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENN 377 (1269)
Q Consensus 298 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n 377 (1269)
|+|++|++...+. .+..-.++-+|+|++|+|.. ++...|.+++.|-.||||+|++..++|. ...+..|+.|+|++|
T Consensus 108 lDLShNqL~EvP~-~LE~AKn~iVLNLS~N~Iet--IPn~lfinLtDLLfLDLS~NrLe~LPPQ-~RRL~~LqtL~Ls~N 183 (1255)
T KOG0444|consen 108 LDLSHNQLREVPT-NLEYAKNSIVLNLSYNNIET--IPNSLFINLTDLLFLDLSNNRLEMLPPQ-IRRLSMLQTLKLSNN 183 (1255)
T ss_pred eecchhhhhhcch-hhhhhcCcEEEEcccCcccc--CCchHHHhhHhHhhhccccchhhhcCHH-HHHHhhhhhhhcCCC
Confidence 6666666655532 23455556666666666554 4455555666666666666666666554 455666666666666
Q ss_pred cccccccccccCCCCCcEEEccCCccc-ccCcccccCCCCCCEEEccCCCCCccChhhhcCCCCCcEEEccCCCCCCchh
Q psy5670 378 QIESIHRNTFASLSNLHTLIMSNNKLK-RIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPK 456 (1269)
Q Consensus 378 ~l~~i~~~~f~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~ 456 (1269)
.+....-..+..+++|+.|.+++.+-+ .-.|.++..+.+|..++++.|++..+ |+.+.++.+|+.|+|++|+++++..
T Consensus 184 PL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~v-Pecly~l~~LrrLNLS~N~iteL~~ 262 (1255)
T KOG0444|consen 184 PLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIV-PECLYKLRNLRRLNLSGNKITELNM 262 (1255)
T ss_pred hhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcc-hHHHhhhhhhheeccCcCceeeeec
Confidence 655443333445566666666665432 22344556666777777777666543 4456667777777777777776665
Q ss_pred hhcCCCCCcEEECCCCCCCccChhhhhccccCCeeeccCCcC--CCCChhhhcCCCCCCEEEcCCCccccccccccCCCC
Q psy5670 457 VLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNI--SNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNS 534 (1269)
Q Consensus 457 ~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l--~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~~~ 534 (1269)
......+|++|++|.|+++..+ .++..++.|+.|.+.+|++ ..||.+ .+.+.+|+++..++|.+.- .|+.+..|.
T Consensus 263 ~~~~W~~lEtLNlSrNQLt~LP-~avcKL~kL~kLy~n~NkL~FeGiPSG-IGKL~~Levf~aanN~LEl-VPEglcRC~ 339 (1255)
T KOG0444|consen 263 TEGEWENLETLNLSRNQLTVLP-DAVCKLTKLTKLYANNNKLTFEGIPSG-IGKLIQLEVFHAANNKLEL-VPEGLCRCV 339 (1255)
T ss_pred cHHHHhhhhhhccccchhccch-HHHhhhHHHHHHHhccCcccccCCccc-hhhhhhhHHHHhhcccccc-CchhhhhhH
Confidence 5555667777777777776554 3566677777777777776 566654 4677777777777776643 355677777
Q ss_pred CccEEEcccccccccCCcCCCCCCCcEEEccCC
Q psy5670 535 NLVAIRLDGNYLTDIGGLFPKLPNLVWLNISEN 567 (1269)
Q Consensus 535 ~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n 567 (1269)
.|+.|.|+.|++..+|..+.-++.|+.||+..|
T Consensus 340 kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreN 372 (1255)
T KOG0444|consen 340 KLQKLKLDHNRLITLPEAIHLLPDLKVLDLREN 372 (1255)
T ss_pred HHHHhcccccceeechhhhhhcCCcceeeccCC
Confidence 777777777777777777777777777777777
No 12
>KOG0444|consensus
Probab=99.93 E-value=3.8e-28 Score=270.31 Aligned_cols=369 Identities=26% Similarity=0.347 Sum_probs=219.4
Q ss_pred ccceeEEEEEeCCceeeccCCCchhccCCcccceeEeccccCCCCChhhccCCccCceeecccccCCCCccceeccchhh
Q psy5670 83 AQYTVRLRIECGDMLFFQSSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHNVF 162 (1269)
Q Consensus 83 ~~~~~~L~L~~~~~~~~~~~i~~~~f~~l~~L~~L~L~~~~i~~i~~~~f~~l~~L~~L~L~~~~~~~~~~~~~i~~~~f 162 (1269)
.+.++-.++++|+ |.+.--|+....++.++.|.|...++..+|. .++.|.+|+.|.+++|+. ....+.+
T Consensus 6 LpFVrGvDfsgND---Fsg~~FP~~v~qMt~~~WLkLnrt~L~~vPe-EL~~lqkLEHLs~~HN~L-------~~vhGEL 74 (1255)
T KOG0444|consen 6 LPFVRGVDFSGND---FSGDRFPHDVEQMTQMTWLKLNRTKLEQVPE-ELSRLQKLEHLSMAHNQL-------ISVHGEL 74 (1255)
T ss_pred cceeecccccCCc---CCCCcCchhHHHhhheeEEEechhhhhhChH-HHHHHhhhhhhhhhhhhh-------Hhhhhhh
Confidence 3556777777777 2323333466777777777777777777755 567777777777755432 1112233
Q ss_pred hhcCCCCCEEEccCCCCc--cCCcccCCCCCCCcEEECCCCCCCCCCccccCCCCcccCCCcccEEEcCCCCCCccCccc
Q psy5670 163 TDELQSLESLDLSMNSIW--TLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEG 240 (1269)
Q Consensus 163 ~~~l~~L~~L~Ls~n~l~--~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 240 (1269)
+.++.|+.+++..|++. +||+.+ ..+..|+.||||.|+++..+.. + ..-.++-.|+||+|+|..||...
T Consensus 75 -s~Lp~LRsv~~R~N~LKnsGiP~di-F~l~dLt~lDLShNqL~EvP~~-L------E~AKn~iVLNLS~N~IetIPn~l 145 (1255)
T KOG0444|consen 75 -SDLPRLRSVIVRDNNLKNSGIPTDI-FRLKDLTILDLSHNQLREVPTN-L------EYAKNSIVLNLSYNNIETIPNSL 145 (1255)
T ss_pred -ccchhhHHHhhhccccccCCCCchh-cccccceeeecchhhhhhcchh-h------hhhcCcEEEEcccCccccCCchH
Confidence 56667777777777665 566665 3566777777777777665432 1 11245666777777777777666
Q ss_pred CCCCCCCCEEEccCCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCCccc-ccCcccccCCCCC
Q psy5670 241 FSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSIN-VLAPGIFNVLTQL 319 (1269)
Q Consensus 241 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L 319 (1269)
|-++..|-.|+|++|.+..++| .+..+..|++|+|++|.+....-.-+..+++|+.|.+++.+-+ .-.|..+..+.+|
T Consensus 146 finLtDLLfLDLS~NrLe~LPP-Q~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL 224 (1255)
T KOG0444|consen 146 FINLTDLLFLDLSNNRLEMLPP-QIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNL 224 (1255)
T ss_pred HHhhHhHhhhccccchhhhcCH-HHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhh
Confidence 6666667777777777666655 3556666777777766543221111223556666666655322 1223345566666
Q ss_pred CEEECcCCCCCccccCcccccCCCCccEEEcCCCCCcccCchhhcCCCCCcEEEccCCcccccccccccCCCCCcEEEcc
Q psy5670 320 IVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMS 399 (1269)
Q Consensus 320 ~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls 399 (1269)
..+|++.|.+.. .+..+.++++|+.|+||+|+++.+... .....+|+.|+++.|+++.++. ++..++.|+.|.+.
T Consensus 225 ~dvDlS~N~Lp~---vPecly~l~~LrrLNLS~N~iteL~~~-~~~W~~lEtLNlSrNQLt~LP~-avcKL~kL~kLy~n 299 (1255)
T KOG0444|consen 225 RDVDLSENNLPI---VPECLYKLRNLRRLNLSGNKITELNMT-EGEWENLETLNLSRNQLTVLPD-AVCKLTKLTKLYAN 299 (1255)
T ss_pred hhccccccCCCc---chHHHhhhhhhheeccCcCceeeeecc-HHHHhhhhhhccccchhccchH-HHhhhHHHHHHHhc
Confidence 666666666653 255566666666666666666655432 2334466666666666666653 34566666666666
Q ss_pred CCccccc-CcccccCCCCCCEEEccCCCCCccChhhhcCCCCCcEEEccCCCCCCchhhhcCCCCCcEEECCCCCCCccC
Q psy5670 400 NNKLKRI-ESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEIN 478 (1269)
Q Consensus 400 ~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~ 478 (1269)
+|+++-. .|..++.+.+|+.+..++|.+. +.|..+..|..|+.|.|+.|.+..+|+++.-++.|+.||+..|.-...+
T Consensus 300 ~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnLVMP 378 (1255)
T KOG0444|consen 300 NNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNLVMP 378 (1255)
T ss_pred cCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcCccCC
Confidence 6665432 2445566666666666665554 3344566666666666666666666666666666666666666544333
No 13
>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo. In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....
Probab=99.93 E-value=9.1e-26 Score=225.17 Aligned_cols=130 Identities=41% Similarity=0.764 Sum_probs=120.0
Q ss_pred EEEEccc-CCHHHHHHHHHHhhhcCCCCceEEEecccCCCCCchhHHHHHHHHhcceEEEEecccchhhhhhHHHHHHHH
Q psy5670 1087 AFVSYSS-KDEAFVAEELAPILENGDPAYKLCLHYREFPVGGYIGDTIVQAVESSRRTIMVLSENFIKSEWCRYEFKSAH 1165 (1269)
Q Consensus 1087 afvsy~~-~d~~~v~~~l~~~Le~~~~~~~l~~~~rd~~~G~~~~~~i~~~i~~Sr~~i~vlS~~~~~s~w~~~e~~~a~ 1165 (1269)
|||||++ +|++||.++|.|.||+.++||++|+++||+.||..+.++|.++|++||++|+|+|++|++|+||.+|++.|+
T Consensus 1 vfisy~~~~d~~~~~~~L~~~Le~~~~g~~~c~~~rD~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~s~wc~~el~~a~ 80 (141)
T PF01582_consen 1 VFISYSGKDDREWFVSHLLPELEERPYGYKLCLDERDFLPGESILDNIQEAIERSRRTIVVLSRNYLSSEWCLFELQEAL 80 (141)
T ss_dssp EEEEE-GHHGHHHHHHCHHHHHHCTSSTS-EEEHHHCTSSSSCHHHHHHHHHHTEEEEEEEESHHHHHHTHHHHHHHHHH
T ss_pred cEEEeCCCCcHHHHHHHHHHHHHhCCCCeEEEEechhhcccccccchhhHhhhhceeeEEEeecccccccchhhhhhhhh
Confidence 8999999 899999999999999866899999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCC-CeEEEEEeCCCCCCCCC--HHHHHHHhcCceEEcCCc-------chHHHHHHh
Q psy5670 1166 HQVLRGK-KRLIVILLGEVPQKDLD--PDIRLYLKSNTYLQWGDK-------LFWEKLKFA 1216 (1269)
Q Consensus 1166 ~~~~~~~-~~~i~i~~~~~~~~~~~--~~l~~~l~~~~~l~w~~~-------~Fw~~l~~~ 1216 (1269)
+.+.+++ .++|+|+++++++.+++ ..++..++..+|++|+++ +||++||||
T Consensus 81 ~~~~~~~~~~~Il~v~~~v~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~fW~~l~~~ 141 (141)
T PF01582_consen 81 ERLLEEGRDKLILPVFYDVSPSDVRPDQSLRFLLRFLTYLRWPDDDSREDRSWFWKKLRYH 141 (141)
T ss_dssp HHHHCSTCTTEEEEESSSS-CHHCHTHHHHHHHHHCTHCEETSSSGGGGGHHHHHHHHHHH
T ss_pred hhccccccccceeeEeccCChhhcChhhhHHHHHHhhhheeCCCCCCccHHHHHHHHHhcC
Confidence 9999977 89999999999988886 578899999999999775 599999986
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.86 E-value=6e-21 Score=233.83 Aligned_cols=154 Identities=25% Similarity=0.369 Sum_probs=83.3
Q ss_pred CeeeccCCcCCCCChhhhcCCCCCCEEEcCCCccccccccccCCCCCccEEEcccccccccCCcCCCCCCCcEEEccCCc
Q psy5670 489 AGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENL 568 (1269)
Q Consensus 489 ~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~ 568 (1269)
..|++++|.++.+|.... ++|+.|++++|+++.++. .+++|++|++++|+++.+|.. .++|+.|++++|.
T Consensus 204 ~~LdLs~~~LtsLP~~l~---~~L~~L~L~~N~Lt~LP~----lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~ 273 (788)
T PRK15387 204 AVLNVGESGLTTLPDCLP---AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNP 273 (788)
T ss_pred cEEEcCCCCCCcCCcchh---cCCCEEEccCCcCCCCCC----CCCCCcEEEecCCccCcccCc---ccccceeeccCCc
Confidence 345555555555544321 245555555555554432 135566666666666555532 2355566666665
Q ss_pred CccccccccCCCccEEECCCCCcccccccccccccccccEEEcCCCccccccCCcccCCccEEEccCcccccccCCccCC
Q psy5670 569 LEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFM 648 (1269)
Q Consensus 569 l~~~~~~~lp~~L~~L~Ls~n~l~~~~~~~~l~~~~~L~~LdLs~N~l~~~~~~~~~~~L~~L~Ls~N~i~~~~~~~f~~ 648 (1269)
+..++. +|.+|+.|++++|+++.++. ..++|+.|++++|+|++++. +|.+|+.|++++|+++++.. .
T Consensus 274 L~~Lp~--lp~~L~~L~Ls~N~Lt~LP~-----~p~~L~~LdLS~N~L~~Lp~--lp~~L~~L~Ls~N~L~~LP~----l 340 (788)
T PRK15387 274 LTHLPA--LPSGLCKLWIFGNQLTSLPV-----LPPGLQELSVSDNQLASLPA--LPSELCKLWAYNNQLTSLPT----L 340 (788)
T ss_pred hhhhhh--chhhcCEEECcCCccccccc-----cccccceeECCCCccccCCC--CcccccccccccCccccccc----c
Confidence 554432 44556666666666665543 12456666666666666543 45566666666666665432 1
Q ss_pred CCCccEEEcCCCCcccc
Q psy5670 649 KPNLTRVDLVGNRLKNI 665 (1269)
Q Consensus 649 ~~~L~~LdLs~N~l~~l 665 (1269)
..+|+.|+|++|+|+.+
T Consensus 341 p~~Lq~LdLS~N~Ls~L 357 (788)
T PRK15387 341 PSGLQELSVSDNQLASL 357 (788)
T ss_pred ccccceEecCCCccCCC
Confidence 13566666666666543
No 15
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.85 E-value=1.1e-19 Score=241.49 Aligned_cols=321 Identities=21% Similarity=0.238 Sum_probs=196.1
Q ss_pred CCChhhccCCccCceeecccccCCCC-ccceeccchhhhhcC-CCCCEEEccCCCCccCCcccCCCCCCCcEEECCCCCC
Q psy5670 126 NLSAGSFRGLRKLKTLTLRTHNTDWS-TMSLDISHNVFTDEL-QSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKL 203 (1269)
Q Consensus 126 ~i~~~~f~~l~~L~~L~L~~~~~~~~-~~~~~i~~~~f~~~l-~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~n~l 203 (1269)
.+...+|.++++|+.|.+..+..+.. ..... .|..| ..+ .+|+.|++.++.+..+|... ...+|++|+|++|++
T Consensus 548 ~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~-lp~~~-~~lp~~Lr~L~~~~~~l~~lP~~f--~~~~L~~L~L~~s~l 623 (1153)
T PLN03210 548 HIHENAFKGMRNLLFLKFYTKKWDQKKEVRWH-LPEGF-DYLPPKLRLLRWDKYPLRCMPSNF--RPENLVKLQMQGSKL 623 (1153)
T ss_pred eecHHHHhcCccccEEEEecccccccccceee-cCcch-hhcCcccEEEEecCCCCCCCCCcC--CccCCcEEECcCccc
Confidence 45667889999999998854332111 11122 24455 444 46999999999998888753 568999999999988
Q ss_pred CCCCccccCCCCcccCCCcccEEEcCCCC-CCccCcccCCCCCCCCEEEccCCCCcccchhhhcCCCCCcEEEccCC-CC
Q psy5670 204 SNVATFSFSNYDTARCGINLRVLDLSNNS-FDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVN-NL 281 (1269)
Q Consensus 204 ~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l 281 (1269)
..+... ...+++|+.|+|+++. +..++ .++.+++|++|++++|......|..+.++++|+.|++++| .+
T Consensus 624 ~~L~~~-------~~~l~~Lk~L~Ls~~~~l~~ip--~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L 694 (1153)
T PLN03210 624 EKLWDG-------VHSLTGLRNIDLRGSKNLKEIP--DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENL 694 (1153)
T ss_pred cccccc-------cccCCCCCEEECCCCCCcCcCC--ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCc
Confidence 765421 2346889999998764 55555 3788899999999988755555677888999999999886 46
Q ss_pred CCCCcccccCCCCCcEEEeeCCcccccCcccccCCCCCCEEECcCCCCCccccCcccccCCCCccEEEcCCCCCccc---
Q psy5670 282 VNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKL--- 358 (1269)
Q Consensus 282 ~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~--- 358 (1269)
..+|... ++++|+.|++++|......|. ..++|+.|++++|.+.. + +.. ..+++|+.|.+.++....+
T Consensus 695 ~~Lp~~i--~l~sL~~L~Lsgc~~L~~~p~---~~~nL~~L~L~~n~i~~--l-P~~-~~l~~L~~L~l~~~~~~~l~~~ 765 (1153)
T PLN03210 695 EILPTGI--NLKSLYRLNLSGCSRLKSFPD---ISTNISWLDLDETAIEE--F-PSN-LRLENLDELILCEMKSEKLWER 765 (1153)
T ss_pred CccCCcC--CCCCCCEEeCCCCCCcccccc---ccCCcCeeecCCCcccc--c-ccc-ccccccccccccccchhhcccc
Confidence 6777643 678888999888854433332 24578888888887754 2 222 2466777777765432211
Q ss_pred ----CchhhcCCCCCcEEEccCCcccccccccccCCCCCcEEEccCCcccccCcccccCCCCCCEEEccCCCCCccChhh
Q psy5670 359 ----DSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENA 434 (1269)
Q Consensus 359 ----~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~ 434 (1269)
.+..+...++|+.|++++|......+..+.++++|+.|++++|...+..|... ++++|+.|++++|......+.
T Consensus 766 ~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~- 843 (1153)
T PLN03210 766 VQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD- 843 (1153)
T ss_pred ccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc-
Confidence 11112223456666666654322222345566666666666553222222222 455566666655533222111
Q ss_pred hcCCCCCcEEEccCCCCCCchhhhcCCCCCcEEECCCC
Q psy5670 435 LKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDN 472 (1269)
Q Consensus 435 ~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n 472 (1269)
..++|+.|+|++|.++.+|..+..+++|+.|++++|
T Consensus 844 --~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C 879 (1153)
T PLN03210 844 --ISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGC 879 (1153)
T ss_pred --cccccCEeECCCCCCccChHHHhcCCCCCEEECCCC
Confidence 123555555555555555555555555555555553
No 16
>smart00255 TIR Toll - interleukin 1 - resistance.
Probab=99.84 E-value=5.7e-21 Score=191.48 Aligned_cols=133 Identities=36% Similarity=0.608 Sum_probs=117.5
Q ss_pred ceeEEEEcccCCHHHHHHHHHHhhhcCCCCceEEEecccCCCCCchhHHHHHHHHhcceEEEEecccchhhhhhHHHHHH
Q psy5670 1084 LFDAFVSYSSKDEAFVAEELAPILENGDPAYKLCLHYREFPVGGYIGDTIVQAVESSRRTIMVLSENFIKSEWCRYEFKS 1163 (1269)
Q Consensus 1084 ~yDafvsy~~~d~~~v~~~l~~~Le~~~~~~~l~~~~rd~~~G~~~~~~i~~~i~~Sr~~i~vlS~~~~~s~w~~~e~~~ 1163 (1269)
+|||||||+++ +|+.+++++.|++...++++|+..+|+.+|....++|.++|++||++|+|+|++|++|+||..|++.
T Consensus 1 ~~dvFISys~~--~~~~~~~v~~L~~~l~~~~~~v~~d~~~~~~~~~~~i~~~i~~s~~~i~vlS~~~~~S~w~~~E~~~ 78 (140)
T smart00255 1 EYDVFISYSGK--EDVRNEFLSHLLEKLRGYGLCVFIDDFEPGGGDLEEIDEAIEKSRIAIVVLSPNYAESEWCLDELVA 78 (140)
T ss_pred CCeEEEECCCC--HHHHHHHHHHHHHHhhcCCcEEEecCcccccchHHHHHHHHHHCcEEEEEECcccccChhHHHHHHH
Confidence 59999999997 6666778888887556778888888999999888899999999999999999999999999999999
Q ss_pred HHHHHhcCC-CeEEEEEeCCCCC--CCCCHHHHHHHhcCceEEcCCcc---hHHHHHHhCCC
Q psy5670 1164 AHHQVLRGK-KRLIVILLGEVPQ--KDLDPDIRLYLKSNTYLQWGDKL---FWEKLKFALPD 1219 (1269)
Q Consensus 1164 a~~~~~~~~-~~~i~i~~~~~~~--~~~~~~l~~~l~~~~~l~w~~~~---Fw~~l~~~l~~ 1219 (1269)
|.+...+.+ .++|||+++++++ ..++..++.+++++ |++|++.. ||++++++||.
T Consensus 79 a~~~~~~~~~~~iIPI~~~~~~~~~~~~~~~l~~~~~~~-~~~w~~~~~~~fW~~~~~~l~~ 139 (140)
T smart00255 79 ALENALEEGGLRVIPIFYEVIPSDVRKQPGKFRKVLKKN-YLKWPEDEKERFWKKALYAVPS 139 (140)
T ss_pred HHHHHHHcCCCeEEEEEEecChHHHHhcccHHHHHHHHH-HhhcCCchhHHHHHHHHHHhcc
Confidence 999988756 9999999999963 34567899999888 99998765 99999999995
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.84 E-value=1.9e-20 Score=229.37 Aligned_cols=262 Identities=24% Similarity=0.304 Sum_probs=144.3
Q ss_pred CccEEEcCCCCCcccCchhhcCCCCCcEEEccCCcccccccccccCCCCCcEEEccCCcccccCcccccCCCCCCEEEcc
Q psy5670 344 RLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLD 423 (1269)
Q Consensus 344 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 423 (1269)
.-..|+++.+.++.+++.. . ++|+.|++++|+++.++. ..++|++|++++|+++.+.. ..++|+.|+++
T Consensus 202 ~~~~LdLs~~~LtsLP~~l-~--~~L~~L~L~~N~Lt~LP~----lp~~Lk~LdLs~N~LtsLP~----lp~sL~~L~Ls 270 (788)
T PRK15387 202 GNAVLNVGESGLTTLPDCL-P--AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSLPV----LPPGLLELSIF 270 (788)
T ss_pred CCcEEEcCCCCCCcCCcch-h--cCCCEEEccCCcCCCCCC----CCCCCcEEEecCCccCcccC----cccccceeecc
Confidence 3456677777666655432 2 256666666666666553 13556666666665554421 12345555555
Q ss_pred CCCCCccChhhhcCCCCCcEEEccCCCCCCchhhhcCCCCCcEEECCCCCCCccChhhhhccccCCeeeccCCcCCCCCh
Q psy5670 424 NNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISK 503 (1269)
Q Consensus 424 ~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~ 503 (1269)
+|.+..++. ..++|+.|++++|+++.+|.. .++|+.|++++| ++..++.
T Consensus 271 ~N~L~~Lp~----lp~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N------------------------~L~~Lp~ 319 (788)
T PRK15387 271 SNPLTHLPA----LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDN------------------------QLASLPA 319 (788)
T ss_pred CCchhhhhh----chhhcCEEECcCCcccccccc---ccccceeECCCC------------------------ccccCCC
Confidence 555443322 113444455555554444431 234444444444 4444332
Q ss_pred hhhcCCCCCCEEEcCCCccccccccccCCCCCccEEEcccccccccCCcCCCCCCCcEEEccCCcCccccccccCCCccE
Q psy5670 504 GVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYALIPADLQW 583 (1269)
Q Consensus 504 ~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~lp~~L~~ 583 (1269)
...+|+.|++++|++++++. ...+|+.|+|++|+++.+|... .+|+.|++++|+|+.++. +|.+|+.
T Consensus 320 ----lp~~L~~L~Ls~N~L~~LP~----lp~~Lq~LdLS~N~Ls~LP~lp---~~L~~L~Ls~N~L~~LP~--l~~~L~~ 386 (788)
T PRK15387 320 ----LPSELCKLWAYNNQLTSLPT----LPSGLQELSVSDNQLASLPTLP---SELYKLWAYNNRLTSLPA--LPSGLKE 386 (788)
T ss_pred ----CcccccccccccCccccccc----cccccceEecCCCccCCCCCCC---cccceehhhccccccCcc--cccccce
Confidence 11234444555555544331 1234555555555555554322 345555555565554432 3445666
Q ss_pred EECCCCCcccccccccccccccccEEEcCCCccccccCCcccCCccEEEccCcccccccCCccCCCCCccEEEcCCCCcc
Q psy5670 584 LDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLK 663 (1269)
Q Consensus 584 L~Ls~n~l~~~~~~~~l~~~~~L~~LdLs~N~l~~~~~~~~~~~L~~L~Ls~N~i~~~~~~~f~~~~~L~~LdLs~N~l~ 663 (1269)
|++++|+|+.++.. ..+|+.|++++|+|++++. ++.+|+.|++++|+|+.+ |..+.++++|+.|+|++|+|+
T Consensus 387 LdLs~N~Lt~LP~l-----~s~L~~LdLS~N~LssIP~--l~~~L~~L~Ls~NqLt~L-P~sl~~L~~L~~LdLs~N~Ls 458 (788)
T PRK15387 387 LIVSGNRLTSLPVL-----PSELKELMVSGNRLTSLPM--LPSGLLSLSVYRNQLTRL-PESLIHLSSETTVNLEGNPLS 458 (788)
T ss_pred EEecCCcccCCCCc-----ccCCCEEEccCCcCCCCCc--chhhhhhhhhccCccccc-ChHHhhccCCCeEECCCCCCC
Confidence 66666666665542 2467778888888777653 456778888888888765 566778888888888888887
Q ss_pred ccccc
Q psy5670 664 NINQT 668 (1269)
Q Consensus 664 ~l~~~ 668 (1269)
+..+.
T Consensus 459 ~~~~~ 463 (788)
T PRK15387 459 ERTLQ 463 (788)
T ss_pred chHHH
Confidence 65443
No 18
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.81 E-value=2.4e-18 Score=228.78 Aligned_cols=345 Identities=24% Similarity=0.306 Sum_probs=195.6
Q ss_pred CCcccCCCCCCCcEEECCCCCCCC------CCccccCCCCcccCCCcccEEEcCCCCCCccCcccCCCCCCCCEEEccCC
Q psy5670 182 LPDAIFCPLQSLSYLNLTQNKLSN------VATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGN 255 (1269)
Q Consensus 182 l~~~~~~~l~~L~~L~Ls~n~l~~------~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 255 (1269)
+...+|.++++|+.|.+..+.... ..+.+|..+ ..+|+.|++.++.++.+|.. | ...+|+.|++.++
T Consensus 549 i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~l-----p~~Lr~L~~~~~~l~~lP~~-f-~~~~L~~L~L~~s 621 (1153)
T PLN03210 549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYL-----PPKLRLLRWDKYPLRCMPSN-F-RPENLVKLQMQGS 621 (1153)
T ss_pred ecHHHHhcCccccEEEEecccccccccceeecCcchhhc-----CcccEEEEecCCCCCCCCCc-C-CccCCcEEECcCc
Confidence 445567777777777776553221 111122211 24678888888877777653 4 4577888888888
Q ss_pred CCcccchhhhcCCCCCcEEEccCCC-CCCCCcccccCCCCCcEEEeeCCcccccCcccccCCCCCCEEECcCCCCCcccc
Q psy5670 256 ILTFLADHALDGLNSLTVLNLSVNN-LVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWV 334 (1269)
Q Consensus 256 ~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 334 (1269)
.+..+. ..+..+++|+.|+|+++. +..+|. +..+++|+.|+|++|......|..+.++++|+.|++++|..... +
T Consensus 622 ~l~~L~-~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~-L 697 (1153)
T PLN03210 622 KLEKLW-DGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEI-L 697 (1153)
T ss_pred cccccc-cccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCc-c
Confidence 777654 346677888888887764 555653 56677888888887754444455677788888888887643321 2
Q ss_pred CcccccCCCCccEEEcCCCCCcccCchhhcCCCCCcEEEccCCcccccccccccCCCCCcEEEccCCcccccCcccccCC
Q psy5670 335 NAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSL 414 (1269)
Q Consensus 335 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l 414 (1269)
+..+ ++++|+.|++++|......+. ...+|+.|++++|.+..++... .+++|+.|.+.++....+..
T Consensus 698 -p~~i-~l~sL~~L~Lsgc~~L~~~p~---~~~nL~~L~L~~n~i~~lP~~~--~l~~L~~L~l~~~~~~~l~~------ 764 (1153)
T PLN03210 698 -PTGI-NLKSLYRLNLSGCSRLKSFPD---ISTNISWLDLDETAIEEFPSNL--RLENLDELILCEMKSEKLWE------ 764 (1153)
T ss_pred -CCcC-CCCCCCEEeCCCCCCcccccc---ccCCcCeeecCCCccccccccc--cccccccccccccchhhccc------
Confidence 2222 567777777777643322221 2346777777777777665431 45666666665543211100
Q ss_pred CCCCEEEccCCCCCccChhhhcCCCCCcEEEccCCC-CCCchhhhcCCCCCcEEECCCCCCCccChhhhhccccCCeeec
Q psy5670 415 TALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNK-LTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRL 493 (1269)
Q Consensus 415 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 493 (1269)
.+..+.+..+...++|+.|++++|. +..+|..++++++|+.|++++|...+..|... ++++|+.|++
T Consensus 765 -----------~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~L 832 (1153)
T PLN03210 765 -----------RVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDL 832 (1153)
T ss_pred -----------cccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEEC
Confidence 0001111112223455555555553 33455555555555555555543222222222 4555566666
Q ss_pred cCCcC-CCCChhhhcCCCCCCEEEcCCCccccccccccCCCCCccEEEccc-ccccccCCcCCCCCCCcEEEccCC
Q psy5670 494 TENNI-SNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDG-NYLTDIGGLFPKLPNLVWLNISEN 567 (1269)
Q Consensus 494 s~n~l-~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~L~~-n~l~~l~~~~~~l~~L~~L~Ls~n 567 (1269)
++|.. ..++. ..++|+.|+|++|.++.++ ..+..+++|+.|++++ +.+..+|..+..+++|+.+++++|
T Consensus 833 s~c~~L~~~p~----~~~nL~~L~Ls~n~i~~iP-~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C 903 (1153)
T PLN03210 833 SGCSRLRTFPD----ISTNISDLNLSRTGIEEVP-WWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDC 903 (1153)
T ss_pred CCCCccccccc----cccccCEeECCCCCCccCh-HHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCC
Confidence 55543 33321 1245666666666666543 3455666677777766 356666666666777777777777
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.76 E-value=3.7e-18 Score=211.27 Aligned_cols=110 Identities=15% Similarity=0.215 Sum_probs=72.9
Q ss_pred CccEEEccCcCccccccccccCCCCCCEEeCCCCCCcccCcccccCCcccCeeecccccCcccChhhhhcCcccceEecc
Q psy5670 828 KLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLD 907 (1269)
Q Consensus 828 ~L~~L~l~~n~i~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~ 907 (1269)
+|+.|++++|.++.++... .++|+.|+|++|+|+.++.. + .++|++|+|++|+|+.+|+... ..|+.|+++
T Consensus 326 sL~~L~Ls~N~Lt~LP~~l---~~sL~~L~Ls~N~L~~LP~~-l--p~~L~~LdLs~N~Lt~LP~~l~---~sL~~LdLs 396 (754)
T PRK15370 326 GLKTLEAGENALTSLPASL---PPELQVLDVSKNQITVLPET-L--PPTITTLDVSRNALTNLPENLP---AALQIMQAS 396 (754)
T ss_pred cceeccccCCccccCChhh---cCcccEEECCCCCCCcCChh-h--cCCcCEEECCCCcCCCCCHhHH---HHHHHHhhc
Confidence 4455555555555543321 25677788888877776652 2 2578888888888888877643 368888888
Q ss_pred Cccceeeeccc-----ccCCccEEEeeCCcccccCCcHHHHHHHHH
Q psy5670 908 HNRITSFAVWH-----LSSQIQSITLTSNPWSCDCDFTEKFRDYLQ 948 (1269)
Q Consensus 908 ~N~l~~~~~~~-----~~~~l~~l~l~~Np~~C~C~~~~~~~~w~~ 948 (1269)
+|+|+.+|..+ ..+.+..+++.+||+... ....++.++.
T Consensus 397 ~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls~~--tl~~L~~Ll~ 440 (754)
T PRK15370 397 RNNLVRLPESLPHFRGEGPQPTRIIVEYNPFSER--TIQNMQRLMS 440 (754)
T ss_pred cCCcccCchhHHHHhhcCCCccEEEeeCCCccHH--HHHHHHHhhh
Confidence 88888877652 347788999999999853 2344545543
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.74 E-value=9.5e-18 Score=207.68 Aligned_cols=58 Identities=21% Similarity=0.332 Sum_probs=25.7
Q ss_pred cccEEEcCCCccccccCCcccCCccEEEccCcccccccCCccCCCCCccEEEcCCCCccccc
Q psy5670 605 RLTYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNIN 666 (1269)
Q Consensus 605 ~L~~LdLs~N~l~~~~~~~~~~~L~~L~Ls~N~i~~~~~~~f~~~~~L~~LdLs~N~l~~l~ 666 (1269)
+|+.|++++|+|+.++. .++++|+.|+|++|+++.+++. +. ..|+.|++++|+|+.++
T Consensus 347 sL~~L~Ls~N~L~~LP~-~lp~~L~~LdLs~N~Lt~LP~~-l~--~sL~~LdLs~N~L~~LP 404 (754)
T PRK15370 347 ELQVLDVSKNQITVLPE-TLPPTITTLDVSRNALTNLPEN-LP--AALQIMQASRNNLVRLP 404 (754)
T ss_pred cccEEECCCCCCCcCCh-hhcCCcCEEECCCCcCCCCCHh-HH--HHHHHHhhccCCcccCc
Confidence 34444444444443322 2334455555555555443321 11 23555555555555443
No 21
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.61 E-value=1.5e-16 Score=184.24 Aligned_cols=278 Identities=24% Similarity=0.267 Sum_probs=151.3
Q ss_pred EEEccCCccccc-CcccccCCCCCCEEEccCCCCCcc----ChhhhcCCCCCcEEEccCCCCCC-------chhhhcCCC
Q psy5670 395 TLIMSNNKLKRI-ESNSLDSLTALSVLSLDNNELEYI----EENALKNSTSLQDFHLNGNKLTE-------IPKVLRNLH 462 (1269)
Q Consensus 395 ~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~Ls~n~l~~-------lp~~l~~l~ 462 (1269)
.|+|..+.+++. ....+..+..|+.|+++++.++.. .+..+...++|++++++++.+.. ++..+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 356666666532 233445556677777777776432 22334556667777777766552 223455566
Q ss_pred CCcEEECCCCCCCccChhhhhcccc---CCeeeccCCcCCCCCh----hhhcCC-CCCCEEEcCCCccccc----ccccc
Q psy5670 463 SLKTLDLGDNLITEINNLSLNSLHQ---LAGLRLTENNISNISK----GVFEKL-SVLTILNLASNKIQKV----EAGTF 530 (1269)
Q Consensus 463 ~L~~L~Ls~n~i~~~~~~~~~~l~~---L~~L~Ls~n~l~~i~~----~~f~~l-~~L~~L~Ls~n~i~~~----~~~~~ 530 (1269)
+|+.|++++|.+.+..+..+..+.. |++|++++|.++.... ..+..+ ++|+.|++++|.+++. ....+
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~ 161 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL 161 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHH
Confidence 7777777777766544444444444 6667776666642111 123344 5666666666665521 11233
Q ss_pred CCCCCccEEEcccccccc-----cCCcCCCCCCCcEEEccCCcCccccccccCCCccEEECCCCCccccccccccccccc
Q psy5670 531 DNNSNLVAIRLDGNYLTD-----IGGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLR 605 (1269)
Q Consensus 531 ~~~~~L~~L~L~~n~l~~-----l~~~~~~l~~L~~L~Ls~n~l~~~~~~~lp~~L~~L~Ls~n~l~~~~~~~~l~~~~~ 605 (1269)
..+.+|+.|++++|.+++ ++..+..+++|+.|++++|.++......+ ...+..+++
T Consensus 162 ~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l-------------------~~~~~~~~~ 222 (319)
T cd00116 162 RANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASAL-------------------AETLASLKS 222 (319)
T ss_pred HhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHH-------------------HHHhcccCC
Confidence 444555666665555542 12222333445555555444432211100 012334566
Q ss_pred ccEEEcCCCccccccCC----cc---cCCccEEEccCcccccc----cCCccCCCCCccEEEcCCCCccccccccccccc
Q psy5670 606 LTYFDASSNKLTELTGN----AI---PHSVENLFLTNNLISKV----QPYTFFMKPNLTRVDLVGNRLKNINQTALRISP 674 (1269)
Q Consensus 606 L~~LdLs~N~l~~~~~~----~~---~~~L~~L~Ls~N~i~~~----~~~~f~~~~~L~~LdLs~N~l~~l~~~~~~~~~ 674 (1269)
|+.|++++|.+++.... .+ ...|+.|++++|.+++. ....+..+++|+.+|+++|.++.-+...+...-
T Consensus 223 L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~ 302 (319)
T cd00116 223 LEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESL 302 (319)
T ss_pred CCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHH
Confidence 77777777777643211 11 24788888888887622 122355568899999999999865433332111
Q ss_pred CCCCCCCCceEecCCcc
Q psy5670 675 LPSHKNIPDFYIGENPF 691 (1269)
Q Consensus 675 ~~~~~~l~~l~l~~Np~ 691 (1269)
......+.++++++|||
T Consensus 303 ~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 303 LEPGNELESLWVKDDSF 319 (319)
T ss_pred hhcCCchhhcccCCCCC
Confidence 11224677888888875
No 22
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.56 E-value=1.5e-15 Score=175.80 Aligned_cols=133 Identities=26% Similarity=0.375 Sum_probs=63.7
Q ss_pred CCCcEEEccCCCCC-----CchhhhcCCCCCcEEECCCCCCCccCh----hhhhccccCCeeeccCCcCCCCCh----hh
Q psy5670 439 TSLQDFHLNGNKLT-----EIPKVLRNLHSLKTLDLGDNLITEINN----LSLNSLHQLAGLRLTENNISNISK----GV 505 (1269)
Q Consensus 439 ~~L~~L~Ls~n~l~-----~lp~~l~~l~~L~~L~Ls~n~i~~~~~----~~~~~l~~L~~L~Ls~n~l~~i~~----~~ 505 (1269)
++|++|++++|.++ .++..+..+++|++|++++|.+++... ..+..+++|+.|++++|.++.... ..
T Consensus 137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 216 (319)
T cd00116 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET 216 (319)
T ss_pred CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH
Confidence 45555555555554 222334444555566665555553211 122333455555555555532221 22
Q ss_pred hcCCCCCCEEEcCCCccccccccccC-----CCCCccEEEcccccccc-----cCCcCCCCCCCcEEEccCCcCcc
Q psy5670 506 FEKLSVLTILNLASNKIQKVEAGTFD-----NNSNLVAIRLDGNYLTD-----IGGLFPKLPNLVWLNISENLLEW 571 (1269)
Q Consensus 506 f~~l~~L~~L~Ls~n~i~~~~~~~~~-----~~~~L~~L~L~~n~l~~-----l~~~~~~l~~L~~L~Ls~n~l~~ 571 (1269)
+..+++|++|++++|++++.....+. ..+.|+.|++++|.+++ +...+..+++|+++++++|.++.
T Consensus 217 ~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~ 292 (319)
T cd00116 217 LASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGE 292 (319)
T ss_pred hcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcH
Confidence 44556666666666665542221111 23556666666665541 22233344555555555555543
No 23
>PLN03194 putative disease resistance protein; Provisional
Probab=99.47 E-value=1.7e-13 Score=135.81 Aligned_cols=94 Identities=22% Similarity=0.298 Sum_probs=85.4
Q ss_pred CCCceeEEEEcccCCH--HHHHHHHHHhhhcCCCCceEEEecccCCCCCchhHHHHHHHHhcceEEEEecccchhhhhhH
Q psy5670 1081 RDKLFDAFVSYSSKDE--AFVAEELAPILENGDPAYKLCLHYREFPVGGYIGDTIVQAVESSRRTIMVLSENFIKSEWCR 1158 (1269)
Q Consensus 1081 ~~~~yDafvsy~~~d~--~~v~~~l~~~Le~~~~~~~l~~~~rd~~~G~~~~~~i~~~i~~Sr~~i~vlS~~~~~s~w~~ 1158 (1269)
-.+.|||||||..+|. .||. .|...|++ .|+++|++++++.+|+.+.+.|.+||+.||..|+|+|++|..|.||.
T Consensus 23 ~~~~yDVFISFrG~DtR~~Fvs-hL~~aL~~--~GI~vF~D~~el~~G~~i~~~L~~AIeeSri~IvVfS~~Ya~S~WCL 99 (187)
T PLN03194 23 SAKPCDVFINHRGIDTKRTIAT-LLYDHLSR--LNLRPFLDNKNMKPGDKLFDKINSAIRNCKVGVAVFSPRYCESYFCL 99 (187)
T ss_pred CCCCCcEEEeCCCccccccHHH-HHHHHHHH--CCCEEEEcCccccCCCcHHHHHHHHHHhCeEEEEEECCCcccchhHH
Confidence 4688999999999996 6884 59999995 69999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCeEEEEEeC
Q psy5670 1159 YEFKSAHHQVLRGKKRLIVILLG 1181 (1269)
Q Consensus 1159 ~e~~~a~~~~~~~~~~~i~i~~~ 1181 (1269)
.|+..++.. +.+||||+++
T Consensus 100 dEL~~I~e~----~~~ViPIFY~ 118 (187)
T PLN03194 100 HELALIMES----KKRVIPIFCD 118 (187)
T ss_pred HHHHHHHHc----CCEEEEEEec
Confidence 999999752 4679999984
No 24
>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A.
Probab=99.35 E-value=1.8e-13 Score=128.48 Aligned_cols=89 Identities=36% Similarity=0.615 Sum_probs=76.2
Q ss_pred EEEEcccCCHHHHHHHHHHhhhcCCCCceEEEecccCCCCCchhHHHHHHHHhcceEEEEecccchhhhhhHHHHHHHHH
Q psy5670 1087 AFVSYSSKDEAFVAEELAPILENGDPAYKLCLHYREFPVGGYIGDTIVQAVESSRRTIMVLSENFIKSEWCRYEFKSAHH 1166 (1269)
Q Consensus 1087 afvsy~~~d~~~v~~~l~~~Le~~~~~~~l~~~~rd~~~G~~~~~~i~~~i~~Sr~~i~vlS~~~~~s~w~~~e~~~a~~ 1166 (1269)
+||||+++|++||.+ |...|++ .||++|++. |+.+|+.+.+.|.++|++|+.+|+++|++|++|+||..|+..|..
T Consensus 1 VFIS~~~~D~~~a~~-l~~~L~~--~g~~v~~d~-~~~~g~~~~~~i~~~i~~s~~~i~~~S~~~~~s~~~~~E~~~a~~ 76 (102)
T PF13676_consen 1 VFISYSSEDREFAER-LAERLES--AGIRVFLDR-DIPPGEDWREEIERAIERSDCVIVLLSPNYLKSPWCRFELGAAWK 76 (102)
T ss_dssp EEEEEEGGGCCCHHH-HHHHHHH--TT--EE-GG-EE-TTS-HHCCCHHCCTTEEEEEEEEEHHHHCTHHHHHHHHHHHC
T ss_pred eEEEecCCcHHHHHH-HHHHHhh--cCCEEEEEE-eCCCCCCHHHHHHHHHHhCCEEEEEECcccccChHHHHHHHHHHH
Confidence 699999999999966 9999996 599999986 999999999999999999999999999999999999999999932
Q ss_pred HHhcCCCeEEEEEeCCC
Q psy5670 1167 QVLRGKKRLIVILLGEV 1183 (1269)
Q Consensus 1167 ~~~~~~~~~i~i~~~~~ 1183 (1269)
.++++|+|.+++.
T Consensus 77 ----~~~~iipv~~~~~ 89 (102)
T PF13676_consen 77 ----RGKPIIPVRLDPC 89 (102)
T ss_dssp ----TSESEEEEECSGG
T ss_pred ----CCCEEEEEEECCc
Confidence 3367999998876
No 25
>KOG0617|consensus
Probab=99.29 E-value=8.2e-14 Score=133.03 Aligned_cols=156 Identities=28% Similarity=0.430 Sum_probs=69.1
Q ss_pred CCcccEEEcCCCCCCccCcccCCCCCCCCEEEccCCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEE
Q psy5670 220 GINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVY 299 (1269)
Q Consensus 220 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~ 299 (1269)
+++++.|.||+|+++.+++. +..+.+|+.|++.+|++.+.+. .++.+++|+.|+++-|++..+|.+ |+.++.|+.|+
T Consensus 32 ~s~ITrLtLSHNKl~~vppn-ia~l~nlevln~~nnqie~lp~-~issl~klr~lnvgmnrl~~lprg-fgs~p~levld 108 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLTVVPPN-IAELKNLEVLNLSNNQIEELPT-SISSLPKLRILNVGMNRLNILPRG-FGSFPALEVLD 108 (264)
T ss_pred hhhhhhhhcccCceeecCCc-HHHhhhhhhhhcccchhhhcCh-hhhhchhhhheecchhhhhcCccc-cCCCchhhhhh
Confidence 34455555555555555543 4555555555555555555432 345555555555555544444332 34444444444
Q ss_pred eeCCcccc-cCcccccCCCCCCEEECcCCCCCccccCcccccCCCCccEEEcCCCCCcccCchhhcCCCCCcEEEccCCc
Q psy5670 300 LQNNSINV-LAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQ 378 (1269)
Q Consensus 300 L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 378 (1269)
|.+|.+.. ..|+-|-.++.|+.|+|++|.+. +.+..++++++|+.|.+..|.+-.++.+ ++.+..|++|.+.+|.
T Consensus 109 ltynnl~e~~lpgnff~m~tlralyl~dndfe---~lp~dvg~lt~lqil~lrdndll~lpke-ig~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNFFYMTTLRALYLGDNDFE---ILPPDVGKLTNLQILSLRDNDLLSLPKE-IGDLTRLRELHIQGNR 184 (264)
T ss_pred ccccccccccCCcchhHHHHHHHHHhcCCCcc---cCChhhhhhcceeEEeeccCchhhCcHH-HHHHHHHHHHhcccce
Confidence 44444332 22333333444444444444433 1233334444444444444444333222 3334444444444444
Q ss_pred cccc
Q psy5670 379 IESI 382 (1269)
Q Consensus 379 l~~i 382 (1269)
++-+
T Consensus 185 l~vl 188 (264)
T KOG0617|consen 185 LTVL 188 (264)
T ss_pred eeec
Confidence 4333
No 26
>KOG0617|consensus
Probab=99.27 E-value=5.3e-14 Score=134.28 Aligned_cols=40 Identities=28% Similarity=0.243 Sum_probs=17.6
Q ss_pred CCCCCccEEEcccccccccCCcCCCCCCCcEEEccCCcCc
Q psy5670 531 DNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLE 570 (1269)
Q Consensus 531 ~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~l~ 570 (1269)
+.+++|+.|.+..|.+-++|..+..++.|++|.+.+|+++
T Consensus 147 g~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 147 GKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLT 186 (264)
T ss_pred hhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceee
Confidence 3344444444444444444444444444444444444443
No 27
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.25 E-value=7.3e-12 Score=127.09 Aligned_cols=122 Identities=27% Similarity=0.374 Sum_probs=48.0
Q ss_pred CCCCCCcCCCcCCCCCCccEEEccCcCccccccccccCCCCCCEEeCCCCCCcccCcccccCCcccCeeecccccCcccC
Q psy5670 812 GNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYIS 891 (1269)
Q Consensus 812 ~n~i~~l~~~~f~~~~~L~~L~l~~n~i~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~i~ 891 (1269)
.+.|..++ .+.+..++++|+|++|.|+.|+.-. ..+.+|+.|+|++|.|+.+.. |..+++|++|+|++|+|+++.
T Consensus 6 ~~~i~~~~--~~~n~~~~~~L~L~~n~I~~Ie~L~-~~l~~L~~L~Ls~N~I~~l~~--l~~L~~L~~L~L~~N~I~~i~ 80 (175)
T PF14580_consen 6 ANMIEQIA--QYNNPVKLRELNLRGNQISTIENLG-ATLDKLEVLDLSNNQITKLEG--LPGLPRLKTLDLSNNRISSIS 80 (175)
T ss_dssp --------------------------------S---TT-TT--EEE-TTS--S--TT------TT--EEE--SS---S-C
T ss_pred cccccccc--ccccccccccccccccccccccchh-hhhcCCCEEECCCCCCccccC--ccChhhhhhcccCCCCCCccc
Confidence 34444444 2455667899999999999986422 367899999999999999975 888999999999999999998
Q ss_pred hhhhhcCcccceEeccCccceeeecc--c-ccCCccEEEeeCCcccccCC
Q psy5670 892 NRTFLSLTHLKVLQLDHNRITSFAVW--H-LSSQIQSITLTSNPWSCDCD 938 (1269)
Q Consensus 892 ~~~f~~l~~L~~L~L~~N~l~~~~~~--~-~~~~l~~l~l~~Np~~C~C~ 938 (1269)
+.....+|+|+.|+|++|+|..+..- + .+++|+.|+|.|||+.-..+
T Consensus 81 ~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~ 130 (175)
T PF14580_consen 81 EGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKN 130 (175)
T ss_dssp HHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTT
T ss_pred cchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhh
Confidence 76556789999999999999988775 3 78999999999999965544
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.14 E-value=2.1e-11 Score=123.72 Aligned_cols=123 Identities=28% Similarity=0.407 Sum_probs=56.1
Q ss_pred CCCcEEEecCCCCCCcCCCcCCCCCCccEEEccCcCccccccccccCCCCCCEEeCCCCCCcccCcccccCCcccCeeec
Q psy5670 803 MDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYL 882 (1269)
Q Consensus 803 ~~~~~l~l~~n~i~~l~~~~f~~~~~L~~L~l~~n~i~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L 882 (1269)
...++|+|++|.|+.|+.-. ..+.+|+.|++++|.|+.++ .|..++.|++|++++|+|+++.+.....+++|++|+|
T Consensus 19 ~~~~~L~L~~n~I~~Ie~L~-~~l~~L~~L~Ls~N~I~~l~--~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L 95 (175)
T PF14580_consen 19 VKLRELNLRGNQISTIENLG-ATLDKLEVLDLSNNQITKLE--GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYL 95 (175)
T ss_dssp -----------------S---TT-TT--EEE-TTS--S--T--T----TT--EEE--SS---S-CHHHHHH-TT--EEE-
T ss_pred cccccccccccccccccchh-hhhcCCCEEECCCCCCcccc--CccChhhhhhcccCCCCCCccccchHHhCCcCCEEEC
Confidence 45689999999999998422 25789999999999999997 4888999999999999999997644457899999999
Q ss_pred ccccCcccCh-hhhhcCcccceEeccCccceeeecc--c---ccCCccEEEe
Q psy5670 883 QYNKIIYISN-RTFLSLTHLKVLQLDHNRITSFAVW--H---LSSQIQSITL 928 (1269)
Q Consensus 883 ~~N~l~~i~~-~~f~~l~~L~~L~L~~N~l~~~~~~--~---~~~~l~~l~l 928 (1269)
++|+|..+.. ..+..+++|++|+|.+|.++.-+.. + .+++|+.||-
T Consensus 96 ~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 96 SNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred cCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 9999998766 5677899999999999999876554 2 6788887754
No 29
>KOG3207|consensus
Probab=99.05 E-value=3.9e-11 Score=131.82 Aligned_cols=204 Identities=24% Similarity=0.247 Sum_probs=123.3
Q ss_pred CCCCCCEEEccCCCCCccCh-hhhcCCCCCcEEEccCCCCCCch---hhhcCCCCCcEEECCCCCCCccChhhh-hcccc
Q psy5670 413 SLTALSVLSLDNNELEYIEE-NALKNSTSLQDFHLNGNKLTEIP---KVLRNLHSLKTLDLGDNLITEINNLSL-NSLHQ 487 (1269)
Q Consensus 413 ~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~Ls~n~l~~lp---~~l~~l~~L~~L~Ls~n~i~~~~~~~~-~~l~~ 487 (1269)
++.+|+++.|.++.+..... .....|++++.|+|++|-+..+- .....+|+|+.|+++.|.+........ ..++.
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 45566777777666554432 34566777788888877666442 334677888888888887654332211 24567
Q ss_pred CCeeeccCCcCCCCC-hhhhcCCCCCCEEEcCCCccccccccccCCCCCccEEEcccccccccC--CcCCCCCCCcEEEc
Q psy5670 488 LAGLRLTENNISNIS-KGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIG--GLFPKLPNLVWLNI 564 (1269)
Q Consensus 488 L~~L~Ls~n~l~~i~-~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~l~--~~~~~l~~L~~L~L 564 (1269)
|+.|.|+.|.++.-. ......+|+|+.|+|.+|....+.......+..|++|+|++|.+-+.+ .....++.|+.|++
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnl 278 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNL 278 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhc
Confidence 788888888874211 123567788888888888644444445556778888888888887765 45566788888888
Q ss_pred cCCcCccccccc--------cCCCccEEECCCCCcccccccccccccccccEEEcCCCcc
Q psy5670 565 SENLLEWFDYAL--------IPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKL 616 (1269)
Q Consensus 565 s~n~l~~~~~~~--------lp~~L~~L~Ls~n~l~~~~~~~~l~~~~~L~~LdLs~N~l 616 (1269)
+.+.+.++.... .-++|+.|+++.|+|.+.+....+..+.+|+.|.+-.|.+
T Consensus 279 s~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~l 338 (505)
T KOG3207|consen 279 SSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYL 338 (505)
T ss_pred cccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccc
Confidence 888777553211 1124555555555544433332333333444444434433
No 30
>KOG1909|consensus
Probab=99.04 E-value=6.5e-11 Score=126.93 Aligned_cols=190 Identities=24% Similarity=0.299 Sum_probs=94.2
Q ss_pred cccCCCCccEEEcCCCCCcccCc----hhhcCCCCCcEEEccCCcccccccccc-------------cCCCCCcEEEccC
Q psy5670 338 TFSGLHRLVVLNIAYNKMNKLDS----SIFKDLYRLQVLHLENNQIESIHRNTF-------------ASLSNLHTLIMSN 400 (1269)
Q Consensus 338 ~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~Ls~n~l~~i~~~~f-------------~~l~~L~~L~Ls~ 400 (1269)
++.++++|+.|+||+|-+..-.. ..+.++..|++|.|.+|.+.......+ +.-+.|+.+...+
T Consensus 87 aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r 166 (382)
T KOG1909|consen 87 ALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGR 166 (382)
T ss_pred HHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeec
Confidence 34455666666666665543222 234456677777777777654332221 2334556666665
Q ss_pred CcccccCc----ccccCCCCCCEEEccCCCCCccChhhhcCCCCCcEEEccCCCCCCchhhhcCCCCCcEEECCCCCCCc
Q psy5670 401 NKLKRIES----NSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITE 476 (1269)
Q Consensus 401 n~l~~~~~----~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~ 476 (1269)
|++...+. ..|...+.|+.+.++.|.|..-.. +.+...+..+++|+.|||.+|.++.
T Consensus 167 Nrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~-------------------~al~eal~~~~~LevLdl~DNtft~ 227 (382)
T KOG1909|consen 167 NRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGV-------------------TALAEALEHCPHLEVLDLRDNTFTL 227 (382)
T ss_pred cccccccHHHHHHHHHhccccceEEEecccccCchh-------------------HHHHHHHHhCCcceeeecccchhhh
Confidence 55544321 223334445555555444432111 0112234444555555555554443
Q ss_pred cCh----hhhhccccCCeeeccCCcCCCCChh-----hhcCCCCCCEEEcCCCcccccc----ccccCCCCCccEEEccc
Q psy5670 477 INN----LSLNSLHQLAGLRLTENNISNISKG-----VFEKLSVLTILNLASNKIQKVE----AGTFDNNSNLVAIRLDG 543 (1269)
Q Consensus 477 ~~~----~~~~~l~~L~~L~Ls~n~l~~i~~~-----~f~~l~~L~~L~Ls~n~i~~~~----~~~~~~~~~L~~L~L~~ 543 (1269)
... ..+..++.|++|++++|.+..-... .-...++|++|.+.+|.|+.-. ..++...+.|..|+|++
T Consensus 228 egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLng 307 (382)
T KOG1909|consen 228 EGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNG 307 (382)
T ss_pred HHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCc
Confidence 221 2233444555555555554322211 1134567777777777765321 12333467777888888
Q ss_pred ccc
Q psy5670 544 NYL 546 (1269)
Q Consensus 544 n~l 546 (1269)
|.+
T Consensus 308 N~l 310 (382)
T KOG1909|consen 308 NRL 310 (382)
T ss_pred ccc
Confidence 877
No 31
>KOG1259|consensus
Probab=99.04 E-value=4.7e-11 Score=124.19 Aligned_cols=134 Identities=27% Similarity=0.307 Sum_probs=97.0
Q ss_pred hccccCCeeeccCCcCCCCChhhhcCCCCCCEEEcCCCccccccccccCCCCCccEEEcccccccccCCcCCCCCCCcEE
Q psy5670 483 NSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWL 562 (1269)
Q Consensus 483 ~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L 562 (1269)
.....|+++|||+|.|+.+... ..-.|.++.|++|+|.|..+.. +..+++|+.|||++|.++++.+.-..+-+++.|
T Consensus 281 dTWq~LtelDLS~N~I~~iDES-vKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLITQIDES-VKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTL 357 (490)
T ss_pred chHhhhhhccccccchhhhhhh-hhhccceeEEeccccceeeehh--hhhcccceEeecccchhHhhhhhHhhhcCEeee
Confidence 3446688899999998888764 4677889999999999887754 667888999999999888887766677788888
Q ss_pred EccCCcCccccccccCCCccEEECCCCCcccccccccccccccccEEEcCCCccccc
Q psy5670 563 NISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTEL 619 (1269)
Q Consensus 563 ~Ls~n~l~~~~~~~lp~~L~~L~Ls~n~l~~~~~~~~l~~~~~L~~LdLs~N~l~~~ 619 (1269)
.+++|.|+++....-.-+|..||+++|+|..+.....+++++.|+.+.|.+|.+..+
T Consensus 358 ~La~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 358 KLAQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred ehhhhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 888887776543322335666777777766665555555666666666666665543
No 32
>KOG3207|consensus
Probab=98.97 E-value=1.5e-10 Score=127.31 Aligned_cols=132 Identities=27% Similarity=0.318 Sum_probs=67.1
Q ss_pred CCCCcEEEccCCCCC--CchhhhcCCCCCcEEECCCCCCCccChhhhhccccCCeeeccCCcCCCCCh-hhhcCCCCCCE
Q psy5670 438 STSLQDFHLNGNKLT--EIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISK-GVFEKLSVLTI 514 (1269)
Q Consensus 438 l~~L~~L~Ls~n~l~--~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~-~~f~~l~~L~~ 514 (1269)
++.|+.|.|++|.++ ++-..+..+|+|+.|++..|....+.......+..|++|+|++|++...+. .....++.|..
T Consensus 196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~ 275 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQ 275 (505)
T ss_pred hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhh
Confidence 345566666666655 222334455666666666665333333344455566666666666644332 12355666666
Q ss_pred EEcCCCcccccccccc------CCCCCccEEEcccccccccC--CcCCCCCCCcEEEccCCcC
Q psy5670 515 LNLASNKIQKVEAGTF------DNNSNLVAIRLDGNYLTDIG--GLFPKLPNLVWLNISENLL 569 (1269)
Q Consensus 515 L~Ls~n~i~~~~~~~~------~~~~~L~~L~L~~n~l~~l~--~~~~~l~~L~~L~Ls~n~l 569 (1269)
|+++.+.+..+..... ...++|+.|+++.|++.+.+ ..+..+++|+.|.+..|.+
T Consensus 276 Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~l 338 (505)
T KOG3207|consen 276 LNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYL 338 (505)
T ss_pred hhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccc
Confidence 6666666655432211 23455555555555554433 1223334444444444433
No 33
>KOG0531|consensus
Probab=98.97 E-value=7.6e-11 Score=140.47 Aligned_cols=220 Identities=32% Similarity=0.397 Sum_probs=122.6
Q ss_pred CCCcEEEccCCcccccCcccccCCCCCCEEEccCCCCCccChhhhcCCCCCcEEEccCCCCCCchhhhcCCCCCcEEECC
Q psy5670 391 SNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLG 470 (1269)
Q Consensus 391 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls 470 (1269)
+.++.++...+........ ...+..++.+.+..|.+..+. ..+..+++|+.|++.+|.+..+...+..+++|++|+++
T Consensus 49 ~~~~~~~~~~~~~~~~~~~-~~~l~~l~~l~l~~n~i~~~~-~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls 126 (414)
T KOG0531|consen 49 SDLEEIDLIFNLDGSDEDL-VESLTSLKELNLRQNLIAKIL-NHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLS 126 (414)
T ss_pred chhhhhcchhccccchhhh-HHHhHhHHhhccchhhhhhhh-cccccccceeeeeccccchhhcccchhhhhcchheecc
Confidence 3444455544433332222 134556666667777766522 23566677778888888777776556667777777777
Q ss_pred CCCCCccChhhhhccccCCeeeccCCcCCCCChhhhcCCCCCCEEEcCCCccccccc-cccCCCCCccEEEccccccccc
Q psy5670 471 DNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEA-GTFDNNSNLVAIRLDGNYLTDI 549 (1269)
Q Consensus 471 ~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~-~~~~~~~~L~~L~L~~n~l~~l 549 (1269)
+|.|+.+.+ +..++.|+.|++++|.+..+.. |..++.|+.+++++|++..+.. . ...+.+++.+++.+|.+..+
T Consensus 127 ~N~I~~i~~--l~~l~~L~~L~l~~N~i~~~~~--~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i 201 (414)
T KOG0531|consen 127 FNKITKLEG--LSTLTLLKELNLSGNLISDISG--LESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI 201 (414)
T ss_pred ccccccccc--hhhccchhhheeccCcchhccC--CccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc
Confidence 777777654 4456667777777777766654 5557777777777777776655 2 34556666677777766654
Q ss_pred CCcCCCCCCCcEEEccCCcCccccccccCCC--ccEEECCCCCcccccccccccccccccEEEcCCCcccccc
Q psy5670 550 GGLFPKLPNLVWLNISENLLEWFDYALIPAD--LQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELT 620 (1269)
Q Consensus 550 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~lp~~--L~~L~Ls~n~l~~~~~~~~l~~~~~L~~LdLs~N~l~~~~ 620 (1269)
.+ +..+..+..+++..|.++.+........ |+.+++++|.+..++ ..+..+..+..|++++|++..+.
T Consensus 202 ~~-~~~~~~l~~~~l~~n~i~~~~~l~~~~~~~L~~l~l~~n~i~~~~--~~~~~~~~l~~l~~~~n~~~~~~ 271 (414)
T KOG0531|consen 202 EG-LDLLKKLVLLSLLDNKISKLEGLNELVMLHLRELYLSGNRISRSP--EGLENLKNLPVLDLSSNRISNLE 271 (414)
T ss_pred cc-hHHHHHHHHhhcccccceeccCcccchhHHHHHHhcccCcccccc--ccccccccccccchhhccccccc
Confidence 31 1222233333555555543322111111 445555555544432 11223334444444444444433
No 34
>KOG0531|consensus
Probab=98.95 E-value=8e-11 Score=140.31 Aligned_cols=246 Identities=27% Similarity=0.311 Sum_probs=123.4
Q ss_pred CCCCCcEEEccCCCCCCchhhhcCCCCCcEEECCCCCCCccChhhhhccccCCeeeccCCcCCCCChhhhcCCCCCCEEE
Q psy5670 437 NSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILN 516 (1269)
Q Consensus 437 ~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~ 516 (1269)
.+..++.+.+..|.+..+-..+..+++|..|++.+|.|..+... +..+++|+.|+|++|.|+.+.. +..++.|+.|+
T Consensus 70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~-l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~ 146 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENL-LSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELN 146 (414)
T ss_pred HhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccc-hhhhhcchheeccccccccccc--hhhccchhhhe
Confidence 34455555555555555333345556666666666666655431 3455666666666666655543 44555566666
Q ss_pred cCCCccccccccccCCCCCccEEEcccccccccCCc-CCCCCCCcEEEccCCcCccccccccCCCccEEECCCCCccccc
Q psy5670 517 LASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGL-FPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELG 595 (1269)
Q Consensus 517 Ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~l~~~-~~~l~~L~~L~Ls~n~l~~~~~~~lp~~L~~L~Ls~n~l~~~~ 595 (1269)
+++|.|..+. .+..+..|+.+++++|.+..+... ...+.+++.+.+.+|.+..+........+..+++..|.++.+.
T Consensus 147 l~~N~i~~~~--~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~~ 224 (414)
T KOG0531|consen 147 LSGNLISDIS--GLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISKLE 224 (414)
T ss_pred eccCcchhcc--CCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcccchHHHHHHHHhhcccccceecc
Confidence 6666665553 233355666666666666655432 3455566666666665554433222233344455566555544
Q ss_pred ccccccccccccEEEcCCCccccc-cCCcccCCccEEEccCcccccccCCccCCCCCccEEEcCCCCccccccccccccc
Q psy5670 596 NYFEIESQLRLTYFDASSNKLTEL-TGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISP 674 (1269)
Q Consensus 596 ~~~~l~~~~~L~~LdLs~N~l~~~-~~~~~~~~L~~L~Ls~N~i~~~~~~~f~~~~~L~~LdLs~N~l~~l~~~~~~~~~ 674 (1269)
.......+ .|+.+++++|.+..+ ........+..|++++|++.... .+...+.+..+..+.|.+... ........
T Consensus 225 ~l~~~~~~-~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 300 (414)
T KOG0531|consen 225 GLNELVML-HLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISNLE--GLERLPKLSELWLNDNKLALS-EAISQEYI 300 (414)
T ss_pred CcccchhH-HHHHHhcccCccccccccccccccccccchhhccccccc--cccccchHHHhccCcchhcch-hhhhcccc
Confidence 32111100 256666666666554 22222345556666666655443 233444555555555555432 11111111
Q ss_pred CCCCCCCCceEecCCcc
Q psy5670 675 LPSHKNIPDFYIGENPF 691 (1269)
Q Consensus 675 ~~~~~~l~~l~l~~Np~ 691 (1269)
.+....++.+++.+||.
T Consensus 301 ~~~~~~~~~~~~~~~~~ 317 (414)
T KOG0531|consen 301 TSAAPTLVTLTLELNPI 317 (414)
T ss_pred ccccccccccccccCcc
Confidence 23334455555555553
No 35
>PLN03150 hypothetical protein; Provisional
Probab=98.95 E-value=8.9e-10 Score=137.08 Aligned_cols=110 Identities=19% Similarity=0.187 Sum_probs=90.4
Q ss_pred ccEEEccCcCccccccccccCCCCCCEEeCCCCCCcccCcccccCCcccCeeecccccCcccChhhhhcCcccceEeccC
Q psy5670 829 LQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDH 908 (1269)
Q Consensus 829 L~~L~l~~n~i~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~ 908 (1269)
++.|+|++|.+....+..|..+++|+.|+|++|.+++..+..|..+++|+.|+|++|++++..+..|..+++|+.|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 55677777777766677788888999999999999877777888999999999999999988888888999999999999
Q ss_pred ccceeeecc-c--ccCCccEEEeeCCcccccCC
Q psy5670 909 NRITSFAVW-H--LSSQIQSITLTSNPWSCDCD 938 (1269)
Q Consensus 909 N~l~~~~~~-~--~~~~l~~l~l~~Np~~C~C~ 938 (1269)
|++++..|. + ...++..+++.+|+..|.++
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCccccCCC
Confidence 998866555 4 33566789999999999765
No 36
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.93 E-value=5.9e-10 Score=93.18 Aligned_cols=60 Identities=37% Similarity=0.514 Sum_probs=35.7
Q ss_pred CCCEEeCCCCCCcccCcccccCCcccCeeecccccCcccChhhhhcCcccceEeccCccc
Q psy5670 852 ELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRI 911 (1269)
Q Consensus 852 ~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l 911 (1269)
+|++|+|++|+|+.+++.+|.++++|++|+|++|+|+.+++++|.++++|++|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 455555666666666555666666666666666666666666666666666666665543
No 37
>KOG1259|consensus
Probab=98.93 E-value=2.4e-10 Score=118.99 Aligned_cols=131 Identities=26% Similarity=0.290 Sum_probs=76.5
Q ss_pred CCccEEEcccccccccCCcCCCCCCCcEEEccCCcCccccccccCCCccEEECCCCCcccccccccccccccccEEEcCC
Q psy5670 534 SNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASS 613 (1269)
Q Consensus 534 ~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~lp~~L~~L~Ls~n~l~~~~~~~~l~~~~~L~~LdLs~ 613 (1269)
..|+++||++|.|+.+.....-.|.++.|++|+|.|..++......+|+.||||+|.++++..+- ..+.+++.|.|+.
T Consensus 284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh--~KLGNIKtL~La~ 361 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWH--LKLGNIKTLKLAQ 361 (490)
T ss_pred hhhhhccccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhH--hhhcCEeeeehhh
Confidence 45666677777666666555556666666666666665544333445666666666666554321 1234566666666
Q ss_pred CccccccCCcccCCccEEEccCcccccccC-CccCCCCCccEEEcCCCCccccc
Q psy5670 614 NKLTELTGNAIPHSVENLFLTNNLISKVQP-YTFFMKPNLTRVDLVGNRLKNIN 666 (1269)
Q Consensus 614 N~l~~~~~~~~~~~L~~L~Ls~N~i~~~~~-~~f~~~~~L~~LdLs~N~l~~l~ 666 (1269)
|.|.+++...-.-+|..||+++|+|..+.. ..++++|-|+.+.|.+|.++.+.
T Consensus 362 N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 362 NKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred hhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence 666655543333356666666666654432 24566666666666666666543
No 38
>KOG1909|consensus
Probab=98.90 E-value=3.9e-10 Score=121.03 Aligned_cols=219 Identities=23% Similarity=0.223 Sum_probs=111.1
Q ss_pred hcCCCCCcEEEccCCcccc----cccccccCCCCCcEEEccCCccc---ccC-------cccccCCCCCCEEEccCCCCC
Q psy5670 363 FKDLYRLQVLHLENNQIES----IHRNTFASLSNLHTLIMSNNKLK---RIE-------SNSLDSLTALSVLSLDNNELE 428 (1269)
Q Consensus 363 ~~~l~~L~~L~Ls~n~l~~----i~~~~f~~l~~L~~L~Ls~n~l~---~~~-------~~~~~~l~~L~~L~Ls~n~i~ 428 (1269)
.....+++.++|++|.+.. .....+.+.++|+..++++--.. ... ..++.+++.|++|+||+|.+.
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 4456788888888887752 22334566677777777653111 111 123345556666666666655
Q ss_pred ccChh----hhcCCCCCcEEEccCCCCCCchhh-hcCCCCCcEEECCCCCCCccChhhhhccccCCeeeccCCcCCCCCh
Q psy5670 429 YIEEN----ALKNSTSLQDFHLNGNKLTEIPKV-LRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISK 503 (1269)
Q Consensus 429 ~~~~~----~~~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~ 503 (1269)
.-.+. .+..++.|++|.|.+|.+...... ++. .|..|. . ......-+.|+.+...+|++..-+.
T Consensus 106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~--~-------~kk~~~~~~Lrv~i~~rNrlen~ga 174 (382)
T KOG1909|consen 106 PKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA--V-------NKKAASKPKLRVFICGRNRLENGGA 174 (382)
T ss_pred ccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH--H-------HhccCCCcceEEEEeeccccccccH
Confidence 43322 234456666666666655522110 000 000000 0 0001122345555555555533222
Q ss_pred ----hhhcCCCCCCEEEcCCCccccc----cccccCCCCCccEEEcccccccc-----cCCcCCCCCCCcEEEccCCcCc
Q psy5670 504 ----GVFEKLSVLTILNLASNKIQKV----EAGTFDNNSNLVAIRLDGNYLTD-----IGGLFPKLPNLVWLNISENLLE 570 (1269)
Q Consensus 504 ----~~f~~l~~L~~L~Ls~n~i~~~----~~~~~~~~~~L~~L~L~~n~l~~-----l~~~~~~l~~L~~L~Ls~n~l~ 570 (1269)
..|+..+.|+.+.++.|.|..- ...+|..|++|+.|||..|.++. +...++.+++|+.|++++|.++
T Consensus 175 ~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~ 254 (382)
T KOG1909|consen 175 TALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLE 254 (382)
T ss_pred HHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccc
Confidence 2355556666666666655321 22445566677777777776652 2345666777778888777776
Q ss_pred cccccc-------cCCCccEEECCCCCcc
Q psy5670 571 WFDYAL-------IPADLQWLDIHGNQIS 592 (1269)
Q Consensus 571 ~~~~~~-------lp~~L~~L~Ls~n~l~ 592 (1269)
.-+... ..++|+.|.+.+|.|+
T Consensus 255 ~~Ga~a~~~al~~~~p~L~vl~l~gNeIt 283 (382)
T KOG1909|consen 255 NEGAIAFVDALKESAPSLEVLELAGNEIT 283 (382)
T ss_pred cccHHHHHHHHhccCCCCceeccCcchhH
Confidence 432211 1234555555555554
No 39
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.89 E-value=2.3e-09 Score=127.79 Aligned_cols=178 Identities=31% Similarity=0.352 Sum_probs=105.5
Q ss_pred ccCCeeeccCCcCCCCChhhhcCC-CCCCEEEcCCCccccccccccCCCCCccEEEcccccccccCCcCCCCCCCcEEEc
Q psy5670 486 HQLAGLRLTENNISNISKGVFEKL-SVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNI 564 (1269)
Q Consensus 486 ~~L~~L~Ls~n~l~~i~~~~f~~l-~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L 564 (1269)
+.++.|++.+|.+..++.. ...+ ++|+.|++++|++..+. ..+..+++|+.|++++|++.+++......+.|+.|++
T Consensus 116 ~~l~~L~l~~n~i~~i~~~-~~~~~~nL~~L~l~~N~i~~l~-~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~l 193 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPL-IGLLKSNLKELDLSDNKIESLP-SPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDL 193 (394)
T ss_pred cceeEEecCCcccccCccc-cccchhhcccccccccchhhhh-hhhhccccccccccCCchhhhhhhhhhhhhhhhheec
Confidence 3444444444444444432 1122 14555555555554442 2334455555555555555555544445555666666
Q ss_pred cCCcCcccccc-ccCCCccEEECCCCCcccccccccccccccccEEEcCCCcccc-ccCCcccCCccEEEccCccccccc
Q psy5670 565 SENLLEWFDYA-LIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTE-LTGNAIPHSVENLFLTNNLISKVQ 642 (1269)
Q Consensus 565 s~n~l~~~~~~-~lp~~L~~L~Ls~n~l~~~~~~~~l~~~~~L~~LdLs~N~l~~-~~~~~~~~~L~~L~Ls~N~i~~~~ 642 (1269)
++|+++.++.. ..+..|++|.+++|.+..... .+..+.++..+.+++|++.. ......+.+++.|++++|.++.+.
T Consensus 194 s~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~--~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~ 271 (394)
T COG4886 194 SGNKISDLPPEIELLSALEELDLSNNSIIELLS--SLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSIS 271 (394)
T ss_pred cCCccccCchhhhhhhhhhhhhhcCCcceecch--hhhhcccccccccCCceeeeccchhccccccceeccccccccccc
Confidence 66666555543 245556666777664322221 23445667777788888876 333444567899999999998887
Q ss_pred CCccCCCCCccEEEcCCCCcccccccc
Q psy5670 643 PYTFFMKPNLTRVDLVGNRLKNINQTA 669 (1269)
Q Consensus 643 ~~~f~~~~~L~~LdLs~N~l~~l~~~~ 669 (1269)
+ +....+|+.|++++|.+..+.+..
T Consensus 272 ~--~~~~~~l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 272 S--LGSLTNLRELDLSGNSLSNALPLI 296 (394)
T ss_pred c--ccccCccCEEeccCccccccchhh
Confidence 6 788899999999999888765543
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.89 E-value=1.1e-09 Score=91.44 Aligned_cols=61 Identities=34% Similarity=0.449 Sum_probs=51.6
Q ss_pred CCccEEEccCcCccccccccccCCCCCCEEeCCCCCCcccCcccccCCcccCeeecccccC
Q psy5670 827 KKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKI 887 (1269)
Q Consensus 827 ~~L~~L~l~~n~i~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l 887 (1269)
++|+.|++++|+|+.|++++|.++++|++|+|++|.++.+++++|.++++|++|+|++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3677888888888888888888888888888888888888888888888888888888875
No 41
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.79 E-value=6.9e-09 Score=123.71 Aligned_cols=175 Identities=33% Similarity=0.431 Sum_probs=74.7
Q ss_pred CCCcEEEccCCCCCCchhhhcCCC-CCcEEECCCCCCCccChhhhhccccCCeeeccCCcCCCCChhhhcCCCCCCEEEc
Q psy5670 439 TSLQDFHLNGNKLTEIPKVLRNLH-SLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNL 517 (1269)
Q Consensus 439 ~~L~~L~Ls~n~l~~lp~~l~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~L 517 (1269)
+.++.|++.+|.++++|....... +|+.|++++|.+..+. ..+..+++|+.|++++|++..++.. ....+.|+.|++
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~-~~~~~l~~L~~L~l~~N~l~~l~~~-~~~~~~L~~L~l 193 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLP-SPLRNLPNLKNLDLSFNDLSDLPKL-LSNLSNLNNLDL 193 (394)
T ss_pred cceeEEecCCcccccCccccccchhhcccccccccchhhhh-hhhhccccccccccCCchhhhhhhh-hhhhhhhhheec
Confidence 344444444444444444333332 4444444444444332 1233444444444444444444432 113444445555
Q ss_pred CCCccccccccccCCCCCccEEEcccccccccCCcCCCCCCCcEEEccCCcCccc-cccccCCCccEEECCCCCcccccc
Q psy5670 518 ASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWF-DYALIPADLQWLDIHGNQISELGN 596 (1269)
Q Consensus 518 s~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~l~~~-~~~~lp~~L~~L~Ls~n~l~~~~~ 596 (1269)
++|++..++... ..+..|++|.+++|.+..++..+..+.++..+.+.+|++..+ .....+.++++|++++|.+++++.
T Consensus 194 s~N~i~~l~~~~-~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~ 272 (394)
T COG4886 194 SGNKISDLPPEI-ELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISS 272 (394)
T ss_pred cCCccccCchhh-hhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceecccccccccccc
Confidence 555444443321 123335555555554444444444555555555555544431 111222234444444444444332
Q ss_pred cccccccccccEEEcCCCccccc
Q psy5670 597 YFEIESQLRLTYFDASSNKLTEL 619 (1269)
Q Consensus 597 ~~~l~~~~~L~~LdLs~N~l~~~ 619 (1269)
+....+++.|++++|.+...
T Consensus 273 ---~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 273 ---LGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred ---ccccCccCEEeccCcccccc
Confidence 23334455555555555443
No 42
>KOG0532|consensus
Probab=98.76 E-value=3.6e-10 Score=127.91 Aligned_cols=171 Identities=23% Similarity=0.315 Sum_probs=111.0
Q ss_pred cEEEccCCcccccCcccccCCCCCCEEEccCCCCCccChhhhcCCCCCcEEEccCCCCCCchhhhcCCCCCcEEECCCCC
Q psy5670 394 HTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNL 473 (1269)
Q Consensus 394 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~ 473 (1269)
...+++.|++..++. .+..+-.|+.+.|..|.+..+. .++.++..|..|+|+.|++..+|..+..++ |+.|-+++|+
T Consensus 78 ~~aDlsrNR~~elp~-~~~~f~~Le~liLy~n~~r~ip-~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNk 154 (722)
T KOG0532|consen 78 VFADLSRNRFSELPE-EACAFVSLESLILYHNCIRTIP-EAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNK 154 (722)
T ss_pred hhhhccccccccCch-HHHHHHHHHHHHHHhccceecc-hhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCc
Confidence 345566666555432 2333445566666666665554 346666777777777777777777666665 7777777777
Q ss_pred CCccChhhhhccccCCeeeccCCcCCCCChhhhcCCCCCCEEEcCCCccccccccccCCCCCccEEEcccccccccCCcC
Q psy5670 474 ITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLF 553 (1269)
Q Consensus 474 i~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~l~~~~ 553 (1269)
++.++. .++....|..|+.+.|.+..++.. +.++.+|+.|++..|++..++.+.. .-.|..||++.|++..||-.|
T Consensus 155 l~~lp~-~ig~~~tl~~ld~s~nei~slpsq-l~~l~slr~l~vrRn~l~~lp~El~--~LpLi~lDfScNkis~iPv~f 230 (722)
T KOG0532|consen 155 LTSLPE-EIGLLPTLAHLDVSKNEIQSLPSQ-LGYLTSLRDLNVRRNHLEDLPEELC--SLPLIRLDFSCNKISYLPVDF 230 (722)
T ss_pred cccCCc-ccccchhHHHhhhhhhhhhhchHH-hhhHHHHHHHHHhhhhhhhCCHHHh--CCceeeeecccCceeecchhh
Confidence 766554 344666677777777777666654 4667777777777777766655432 345777777777777777777
Q ss_pred CCCCCCcEEEccCCcCcc
Q psy5670 554 PKLPNLVWLNISENLLEW 571 (1269)
Q Consensus 554 ~~l~~L~~L~Ls~n~l~~ 571 (1269)
..+..|++|.|.+|.+++
T Consensus 231 r~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 231 RKMRHLQVLQLENNPLQS 248 (722)
T ss_pred hhhhhheeeeeccCCCCC
Confidence 777777777777776664
No 43
>KOG0532|consensus
Probab=98.73 E-value=6.2e-10 Score=126.04 Aligned_cols=192 Identities=23% Similarity=0.250 Sum_probs=143.5
Q ss_pred CCcEEEccCCCCCCchhhhcCCCCCcEEECCCCCCCccChhhhhccccCCeeeccCCcCCCCChhhhcCCCCCCEEEcCC
Q psy5670 440 SLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLAS 519 (1269)
Q Consensus 440 ~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~ 519 (1269)
--...+++.|++.++|..+..+..|+.+.+..|.+..++. ++.++..|+.|+|+.|++..+|...+ .+ -|+.|-+++
T Consensus 76 dt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~-~i~~L~~lt~l~ls~NqlS~lp~~lC-~l-pLkvli~sN 152 (722)
T KOG0532|consen 76 DTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPE-AICNLEALTFLDLSSNQLSHLPDGLC-DL-PLKVLIVSN 152 (722)
T ss_pred chhhhhccccccccCchHHHHHHHHHHHHHHhccceecch-hhhhhhHHHHhhhccchhhcCChhhh-cC-cceeEEEec
Confidence 3445677778888888777777778888888887776544 66778888888888888888877543 33 388888888
Q ss_pred CccccccccccCCCCCccEEEcccccccccCCcCCCCCCCcEEEccCCcCccccccccCCCccEEECCCCCccccccccc
Q psy5670 520 NKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFE 599 (1269)
Q Consensus 520 n~i~~~~~~~~~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~lp~~L~~L~Ls~n~l~~~~~~~~ 599 (1269)
|+++.++. .++...+|..||.+.|.+..+|..+.++.+|+.|++..|++..++....--.|..||+|.|+++.+|-.
T Consensus 153 Nkl~~lp~-~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~LpLi~lDfScNkis~iPv~-- 229 (722)
T KOG0532|consen 153 NKLTSLPE-EIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSLPLIRLDFSCNKISYLPVD-- 229 (722)
T ss_pred CccccCCc-ccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCCceeeeecccCceeecchh--
Confidence 88877654 445778888899999999998888888899999999999888776655544688899999999988863
Q ss_pred ccccccccEEEcCCCccccccCCcc----cCCccEEEccCcc
Q psy5670 600 IESQLRLTYFDASSNKLTELTGNAI----PHSVENLFLTNNL 637 (1269)
Q Consensus 600 l~~~~~L~~LdLs~N~l~~~~~~~~----~~~L~~L~Ls~N~ 637 (1269)
+..+..|++|-|.+|.+.+-+..-. -+-.|+|+..-++
T Consensus 230 fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 230 FRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred hhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhcc
Confidence 4577889999999998887443211 1234666666653
No 44
>KOG4658|consensus
Probab=98.64 E-value=2e-08 Score=127.29 Aligned_cols=104 Identities=29% Similarity=0.316 Sum_probs=48.6
Q ss_pred cccEEEcCCCC--CCccCcccCCCCCCCCEEEccCCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEE
Q psy5670 222 NLRVLDLSNNS--FDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVY 299 (1269)
Q Consensus 222 ~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~ 299 (1269)
+|++|-+.+|. +..++.+.|..++.|+.|+|++|.--...|..++++-+|++|+++++.+..+|.+ +.+++.|.+|+
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~-l~~Lk~L~~Ln 624 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSG-LGNLKKLIYLN 624 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchH-HHHHHhhheec
Confidence 45555444443 3444444444555555555554443333344455555555555555555555443 24455555555
Q ss_pred eeCCcccccCcccccCCCCCCEEECcC
Q psy5670 300 LQNNSINVLAPGIFNVLTQLIVLDLSN 326 (1269)
Q Consensus 300 L~~n~l~~~~~~~~~~l~~L~~L~L~~ 326 (1269)
+..+.-....++....+++|++|.+..
T Consensus 625 l~~~~~l~~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 625 LEVTGRLESIPGILLELQSLRVLRLPR 651 (889)
T ss_pred cccccccccccchhhhcccccEEEeec
Confidence 544433222234444455555555443
No 45
>KOG4658|consensus
Probab=98.33 E-value=4.1e-07 Score=115.69 Aligned_cols=278 Identities=21% Similarity=0.164 Sum_probs=151.8
Q ss_pred CCCcEEEccCCcccccccccccCCCCCcEEEccCCc--ccccCcccccCCCCCCEEEccCCCCCccChhhhcCCCCCcEE
Q psy5670 367 YRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNK--LKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDF 444 (1269)
Q Consensus 367 ~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 444 (1269)
...+.+.+-+|.+..+... ..++.|++|-+..|. +..+....|..++.|+.|||++|.-.+..|..++.+-+|++|
T Consensus 523 ~~~rr~s~~~~~~~~~~~~--~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL 600 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHIAGS--SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYL 600 (889)
T ss_pred hheeEEEEeccchhhccCC--CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcc
Confidence 4566666666666555432 244577777777775 555555667778888888888776666666777778888888
Q ss_pred EccCCCCCCchhhhcCCCCCcEEECCCCCCCccChhhhhccccCCeeeccCCcC--CCCChhhhcCCCCCCEEEcCCCcc
Q psy5670 445 HLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNI--SNISKGVFEKLSVLTILNLASNKI 522 (1269)
Q Consensus 445 ~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l--~~i~~~~f~~l~~L~~L~Ls~n~i 522 (1269)
++++..+..+|..+.+++.|.+|++..+.-....+.....+.+|+.|.+..-.. +...-.....+.+|+.+.......
T Consensus 601 ~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~ 680 (889)
T KOG4658|consen 601 DLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV 680 (889)
T ss_pred cccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh
Confidence 888888888888888888888888887765555455556677788777765442 222222234555555555533322
Q ss_pred ccccccccCCCCCcc----EEEcccccccccCCcCCCCCCCcEEEccCCcCccccccccCCCccEEECCCCCcccccccc
Q psy5670 523 QKVEAGTFDNNSNLV----AIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYF 598 (1269)
Q Consensus 523 ~~~~~~~~~~~~~L~----~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~lp~~L~~L~Ls~n~l~~~~~~~ 598 (1269)
. ....+.....|. .+.+.++........+..+.+|+.|.+.++.+......... +.+.++
T Consensus 681 -~-~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~-~~~~~~------------- 744 (889)
T KOG4658|consen 681 -L-LLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEE-SLIVLL------------- 744 (889)
T ss_pred -H-hHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhccccc-ccchhh-------------
Confidence 0 011112222222 22222333333444455566666666666655422110000 000000
Q ss_pred cccccccccEEEcCCC-ccccccCCcccCCccEEEccCcccccccCCccCCCCCccEEEcCCCCcccc
Q psy5670 599 EIESQLRLTYFDASSN-KLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNI 665 (1269)
Q Consensus 599 ~l~~~~~L~~LdLs~N-~l~~~~~~~~~~~L~~L~Ls~N~i~~~~~~~f~~~~~L~~LdLs~N~l~~l 665 (1269)
.++++..+.+.++ .........++++|+.|.+..+.....+......+..++.+-+..+.+.+.
T Consensus 745 ---~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l 809 (889)
T KOG4658|consen 745 ---CFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGL 809 (889)
T ss_pred ---hHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccc
Confidence 0112222222222 233334445677888888887755444333444445555555555555443
No 46
>KOG1859|consensus
Probab=98.30 E-value=2.5e-08 Score=115.92 Aligned_cols=135 Identities=21% Similarity=0.218 Sum_probs=108.6
Q ss_pred EEecCCCCCCcCCCcCCCCCCccEEEccCcCccccccccccCCCCCCEEeCCCCCCcccCcccccCCcccCeeecccccC
Q psy5670 808 LYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKI 887 (1269)
Q Consensus 808 l~l~~n~i~~l~~~~f~~~~~L~~L~l~~n~i~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l 887 (1269)
.+.+.|.+..++. ++.-++.|+.|+|++|+++.++ .+..|+.|++|||+.|.++.++.-.-.++. |+.|.|++|.+
T Consensus 169 a~fsyN~L~~mD~-SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l 244 (1096)
T KOG1859|consen 169 ASFSYNRLVLMDE-SLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNAL 244 (1096)
T ss_pred hhcchhhHHhHHH-HHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeecccHH
Confidence 3444555555442 4445778999999999999987 788899999999999999999886666665 99999999999
Q ss_pred cccChhhhhcCcccceEeccCccceeeecc-c--ccCCccEEEeeCCcccccCCcHHHHHHHHH
Q psy5670 888 IYISNRTFLSLTHLKVLQLDHNRITSFAVW-H--LSSQIQSITLTSNPWSCDCDFTEKFRDYLQ 948 (1269)
Q Consensus 888 ~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~-~--~~~~l~~l~l~~Np~~C~C~~~~~~~~w~~ 948 (1269)
+++. ...++.+|+-|||+.|-|.....- + .+..|..|.|.|||+-|.-...+...+|+.
T Consensus 245 ~tL~--gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p~hRaataqYl~ 306 (1096)
T KOG1859|consen 245 TTLR--GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAPWHRAATAQYLH 306 (1096)
T ss_pred Hhhh--hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCHHHHHHHHhHhc
Confidence 9885 357899999999999999988776 3 788999999999999987664444445554
No 47
>PLN03150 hypothetical protein; Provisional
Probab=98.22 E-value=1.8e-06 Score=107.81 Aligned_cols=107 Identities=18% Similarity=0.138 Sum_probs=94.3
Q ss_pred CcEEEecCCCCCCcCCCcCCCCCCccEEEccCcCccccccccccCCCCCCEEeCCCCCCcccCcccccCCcccCeeeccc
Q psy5670 805 ATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQY 884 (1269)
Q Consensus 805 ~~~l~l~~n~i~~l~~~~f~~~~~L~~L~l~~n~i~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~ 884 (1269)
++.|+|++|.++..-+..+..+++|+.|+|++|++....+..|..+++|+.|+|++|+++...+..|.++++|+.|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 47899999999876667888999999999999999988888899999999999999999988888999999999999999
Q ss_pred ccCcccChhhhhc-CcccceEeccCccc
Q psy5670 885 NKIIYISNRTFLS-LTHLKVLQLDHNRI 911 (1269)
Q Consensus 885 N~l~~i~~~~f~~-l~~L~~L~L~~N~l 911 (1269)
|++++..|..+.. ..++..+++.+|..
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCcc
Confidence 9999777766665 35677889998853
No 48
>KOG1644|consensus
Probab=98.12 E-value=3.5e-06 Score=84.41 Aligned_cols=122 Identities=23% Similarity=0.290 Sum_probs=78.4
Q ss_pred cEEEecCCCCCCcCCCcCCCCCCccEEEccCcCccccccccccCCCCCCEEeCCCCCCcccCcccccCCcccCeeecccc
Q psy5670 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYN 885 (1269)
Q Consensus 806 ~~l~l~~n~i~~l~~~~f~~~~~L~~L~l~~n~i~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N 885 (1269)
++++|.+.++..+..-. ....+...+||++|.|..++ .|..++.|.+|.|++|+|+.|.+..-.-+++|+.|.|.+|
T Consensus 22 ~e~~LR~lkip~ienlg-~~~d~~d~iDLtdNdl~~l~--~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN 98 (233)
T KOG1644|consen 22 RELDLRGLKIPVIENLG-ATLDQFDAIDLTDNDLRKLD--NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN 98 (233)
T ss_pred cccccccccccchhhcc-ccccccceecccccchhhcc--cCCCccccceEEecCCcceeeccchhhhccccceEEecCc
Confidence 45677777777666411 11345667777777766654 4666777777777777777777765556667777777777
Q ss_pred cCcccCh-hhhhcCcccceEeccCccceeeecc--c---ccCCccEEEeeC
Q psy5670 886 KIIYISN-RTFLSLTHLKVLQLDHNRITSFAVW--H---LSSQIQSITLTS 930 (1269)
Q Consensus 886 ~l~~i~~-~~f~~l~~L~~L~L~~N~l~~~~~~--~---~~~~l~~l~l~~ 930 (1269)
+|..+.+ .-+..+|+|++|.+-+|.++.-... + .+++++.||+++
T Consensus 99 si~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 99 SIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred chhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 7666543 3345567777777777777665544 2 566777776654
No 49
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=98.10 E-value=1.8e-06 Score=116.00 Aligned_cols=68 Identities=16% Similarity=0.370 Sum_probs=50.2
Q ss_pred ccCccceeeecc-c-ccCCccEEEeeCCcccccCCcHHHHHHHHHhccCCcCccCcceeccCCccceeeee
Q psy5670 906 LDHNRITSFAVW-H-LSSQIQSITLTSNPWSCDCDFTEKFRDYLQRSRSSVHDISQIRCMTGSEVGFTIMR 974 (1269)
Q Consensus 906 L~~N~l~~~~~~-~-~~~~l~~l~l~~Np~~C~C~~~~~~~~w~~~~~~~i~~~~~~~C~~p~~~~~~~~~ 974 (1269)
|++|+|+.+++. | .+++|+.|+|++|||+|||++ .||++|++.....+.....+.|..|...++..+.
T Consensus 2 LSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L-~WL~~WL~~~~v~v~~~~~i~CasP~~LrG~~L~ 71 (2740)
T TIGR00864 2 ISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGL-ARLPRWAEEKGVKVRQPEAALCAGPGALAGQPLL 71 (2740)
T ss_pred CCCCcCCccChHHhccCCCceEEEeeCCcccccccc-HHHHHHHHhcCccccCCcccCCCCChHHCCCCcc
Confidence 344444444444 3 345667899999999999997 7999999988766666678999999987664444
No 50
>KOG1859|consensus
Probab=98.10 E-value=6.6e-08 Score=112.52 Aligned_cols=175 Identities=25% Similarity=0.291 Sum_probs=106.7
Q ss_pred cccCCCCCCEEEccCCCCCccChhhhcC-CCCCcEEEccCCCCCCchhhhcC----------CCCCcEEECCCCCCCccC
Q psy5670 410 SLDSLTALSVLSLDNNELEYIEENALKN-STSLQDFHLNGNKLTEIPKVLRN----------LHSLKTLDLGDNLITEIN 478 (1269)
Q Consensus 410 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~-l~~L~~L~Ls~n~l~~lp~~l~~----------l~~L~~L~Ls~n~i~~~~ 478 (1269)
.+..+.+|+.|.|.++++.... .+.. -..|++|-. .|.+..+-..|.. .-.|.+.+++.|.+....
T Consensus 104 ~ifpF~sLr~LElrg~~L~~~~--GL~~lr~qLe~LIC-~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~mD 180 (1096)
T KOG1859|consen 104 SIFPFRSLRVLELRGCDLSTAK--GLQELRHQLEKLIC-HNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVLMD 180 (1096)
T ss_pred eeccccceeeEEecCcchhhhh--hhHHHHHhhhhhhh-hccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHhHH
Confidence 3445678888888888776421 1111 123444422 2333322211110 134677777777776553
Q ss_pred hhhhhccccCCeeeccCCcCCCCChhhhcCCCCCCEEEcCCCccccccccccCCCCCccEEEcccccccccCCcCCCCCC
Q psy5670 479 NLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPN 558 (1269)
Q Consensus 479 ~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~l~~~~~~l~~ 558 (1269)
.++.-++.|+.|+|+.|++..+. .+..++.|+.|||++|.+..++.-...+|. |+.|.+++|.++.+- .+.++.+
T Consensus 181 -~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL~-gie~Lks 255 (1096)
T KOG1859|consen 181 -ESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTLR-GIENLKS 255 (1096)
T ss_pred -HHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhhh-hHHhhhh
Confidence 35667778888888888887665 367788888888888888777665555665 888888888877663 2456777
Q ss_pred CcEEEccCCcCccccccc---cCCCccEEECCCCCcc
Q psy5670 559 LVWLNISENLLEWFDYAL---IPADLQWLDIHGNQIS 592 (1269)
Q Consensus 559 L~~L~Ls~n~l~~~~~~~---lp~~L~~L~Ls~n~l~ 592 (1269)
|+.||+++|-|..+..-. .-..|+.|.|.||.+-
T Consensus 256 L~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 256 LYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 777788877665432111 1134566666666654
No 51
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=98.08 E-value=6.2e-06 Score=81.06 Aligned_cols=108 Identities=19% Similarity=0.367 Sum_probs=52.9
Q ss_pred cCCCcCCCCCCccEEEccCcCccccccccccCCCCCCEEeCCCCCCcccCcccccCCcccCeeecccccCcccChhhhhc
Q psy5670 818 VGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLS 897 (1269)
Q Consensus 818 l~~~~f~~~~~L~~L~l~~n~i~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~ 897 (1269)
|+..+|.++.+|+.+.+.+ .+..|...+|.++++|+.+++.++ +..+...+|.++.+|+.+.+.+ .+..++...|..
T Consensus 3 i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~ 79 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSN 79 (129)
T ss_dssp E-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT
T ss_pred ECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccc
Confidence 4555666666666666653 466666666666666666666653 6666666666666666666654 566666666666
Q ss_pred CcccceEeccCccceeeecc-cccCCccEEEee
Q psy5670 898 LTHLKVLQLDHNRITSFAVW-HLSSQIQSITLT 929 (1269)
Q Consensus 898 l~~L~~L~L~~N~l~~~~~~-~~~~~l~~l~l~ 929 (1269)
+++|+.+++..| ++.++.. |....++.+.+.
T Consensus 80 ~~~l~~i~~~~~-~~~i~~~~f~~~~l~~i~~~ 111 (129)
T PF13306_consen 80 CTNLKNIDIPSN-ITEIGSSSFSNCNLKEINIP 111 (129)
T ss_dssp -TTECEEEETTT--BEEHTTTTTT-T--EEE-T
T ss_pred cccccccccCcc-ccEEchhhhcCCCceEEEEC
Confidence 666666666554 5555555 422255555543
No 52
>KOG1644|consensus
Probab=98.07 E-value=4.2e-06 Score=83.79 Aligned_cols=102 Identities=26% Similarity=0.300 Sum_probs=87.1
Q ss_pred ccEEEccCcCccccccccccCCCCCCEEeCCCCCCcccCcccccCCcccCeeecccccCcccChhhhhcCcccceEeccC
Q psy5670 829 LQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDH 908 (1269)
Q Consensus 829 L~~L~l~~n~i~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~ 908 (1269)
=+.++|++.+|..+.. .=.-+.+...+||++|.+..+.. |..+++|.+|.|++|+|+.|++..-.-++.|+.|.|.+
T Consensus 21 e~e~~LR~lkip~ien-lg~~~d~~d~iDLtdNdl~~l~~--lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn 97 (233)
T KOG1644|consen 21 ERELDLRGLKIPVIEN-LGATLDQFDAIDLTDNDLRKLDN--LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTN 97 (233)
T ss_pred ccccccccccccchhh-ccccccccceecccccchhhccc--CCCccccceEEecCCcceeeccchhhhccccceEEecC
Confidence 4578888888888765 11234578899999999999874 89999999999999999999998877789999999999
Q ss_pred ccceeeecc--c-ccCCccEEEeeCCcc
Q psy5670 909 NRITSFAVW--H-LSSQIQSITLTSNPW 933 (1269)
Q Consensus 909 N~l~~~~~~--~-~~~~l~~l~l~~Np~ 933 (1269)
|.|..+..- + ..++|++|.+-+||.
T Consensus 98 Nsi~~l~dl~pLa~~p~L~~Ltll~Npv 125 (233)
T KOG1644|consen 98 NSIQELGDLDPLASCPKLEYLTLLGNPV 125 (233)
T ss_pred cchhhhhhcchhccCCccceeeecCCch
Confidence 999988765 3 788999999999994
No 53
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=98.06 E-value=1.1e-05 Score=79.37 Aligned_cols=120 Identities=23% Similarity=0.393 Sum_probs=43.8
Q ss_pred hcCCCCCEEEccCCCCccCCcccCCCCCCCcEEECCCCCCCCCCccccCCCCcccCCCcccEEEcCCCCCCccCcccCCC
Q psy5670 164 DELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSR 243 (1269)
Q Consensus 164 ~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 243 (1269)
.++++|+.+.+.. .+..++...|..+++|+.+.+..+ +..+....|.+ +.+|+.+.+.+ .+..+....|..
T Consensus 9 ~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~------~~~l~~i~~~~-~~~~i~~~~F~~ 79 (129)
T PF13306_consen 9 YNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSN------CKSLESITFPN-NLKSIGDNAFSN 79 (129)
T ss_dssp TT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-------TT-EEEEETS-TT-EE-TTTTTT
T ss_pred hCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeec------ccccccccccc-cccccccccccc
Confidence 4444455544442 344444444555545555554442 44443333332 23444444433 344444445555
Q ss_pred CCCCCEEEccCCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCC
Q psy5670 244 LSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDL 295 (1269)
Q Consensus 244 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L 295 (1269)
+++|+.+.+..+ +..+....|.++ +|+.+.+.. .+..++...|.++++|
T Consensus 80 ~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 80 CTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp -TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred cccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 555665555443 444555555554 555555544 3455555555555544
No 54
>KOG4579|consensus
Probab=98.05 E-value=3e-07 Score=85.76 Aligned_cols=115 Identities=19% Similarity=0.207 Sum_probs=86.5
Q ss_pred CccEEEccCcCccccccccccCCCCCCEEeCCCCCCcccCcccccCCcccCeeecccccCcccChhhhhcCcccceEecc
Q psy5670 828 KLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLD 907 (1269)
Q Consensus 828 ~L~~L~l~~n~i~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~ 907 (1269)
.|+..+|++|.+...++..-...+.+++|+|++|+|+.++.. |..++.|+.|+++.|.+...+.-.+. +.+|-.|+..
T Consensus 54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aam~aLr~lNl~~N~l~~~p~vi~~-L~~l~~Lds~ 131 (177)
T KOG4579|consen 54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE-LAAMPALRSLNLRFNPLNAEPRVIAP-LIKLDMLDSP 131 (177)
T ss_pred eEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH-HhhhHHhhhcccccCccccchHHHHH-HHhHHHhcCC
Confidence 455566666666666555444556778888888888888876 88888888888888888888765554 8888888888
Q ss_pred Cccceeeecc-cccCCccEEEeeCCcccccCCcHHHHHHH
Q psy5670 908 HNRITSFAVW-HLSSQIQSITLTSNPWSCDCDFTEKFRDY 946 (1269)
Q Consensus 908 ~N~l~~~~~~-~~~~~l~~l~l~~Np~~C~C~~~~~~~~w 946 (1269)
+|.+..++.+ |..+....+++.++||.-.|.- .++.|
T Consensus 132 ~na~~eid~dl~~s~~~al~~lgnepl~~~~~~--klqa~ 169 (177)
T KOG4579|consen 132 ENARAEIDVDLFYSSLPALIKLGNEPLGDETKK--KLQAL 169 (177)
T ss_pred CCccccCcHHHhccccHHHHHhcCCcccccCcc--ccccc
Confidence 8888888888 5444555677899999999983 35555
No 55
>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments. The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein []. This domain is similar to the TIR domain [].; PDB: 3HYN_A.
Probab=98.05 E-value=5.6e-06 Score=81.03 Aligned_cols=99 Identities=26% Similarity=0.462 Sum_probs=53.7
Q ss_pred eeEEEEcccCCHHHHHHHHHHhhhcC-----CCCceE--E--------EecccCCCCCchhHHHHHHHHhcceEEEEecc
Q psy5670 1085 FDAFVSYSSKDEAFVAEELAPILENG-----DPAYKL--C--------LHYREFPVGGYIGDTIVQAVESSRRTIMVLSE 1149 (1269)
Q Consensus 1085 yDafvsy~~~d~~~v~~~l~~~Le~~-----~~~~~l--~--------~~~rd~~~G~~~~~~i~~~i~~Sr~~i~vlS~ 1149 (1269)
|.|||||+++|..+..+.|...++.. +..+.+ . -...|....+.+-..|.+.|+.|..+||++++
T Consensus 1 ~~vFIS~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~I~~~i~~s~~~IVLig~ 80 (130)
T PF08937_consen 1 YKVFISYSHDDDDWYYDQLKEWLENSYEIPRDKNFDFRFYDVSKWEPIRSRDDDSSSEYIKRKIRERIKNSSVTIVLIGP 80 (130)
T ss_dssp ----------THH-HHHHHHHHHHH-------TTSS--BT---TTT---TTS---TTTTHHHHHHHHHHTEEEEEEE--T
T ss_pred CCccccccccCcHHHHHHHHHHhccccccccccccccCcccccccCcccCccccchHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 68999999999996556688777762 111211 0 11222234557889999999999999999999
Q ss_pred cchhhhhhHHHHHHHHHHHhcCCCeEEEEEeCCCCCCC
Q psy5670 1150 NFIKSEWCRYEFKSAHHQVLRGKKRLIVILLGEVPQKD 1187 (1269)
Q Consensus 1150 ~~~~s~w~~~e~~~a~~~~~~~~~~~i~i~~~~~~~~~ 1187 (1269)
+.-.+.|..+|++.|+. .+..||.|.+.+.....
T Consensus 81 ~T~~s~wV~~EI~~A~~----~~~~Ii~V~~~~~~~~~ 114 (130)
T PF08937_consen 81 NTAKSKWVNWEIEYALK----KGKPIIGVYLPGLKDRD 114 (130)
T ss_dssp T----HHHHHHHHHHTT----T---EEEEETT--SGGG
T ss_pred CcccCcHHHHHHHHHHH----CCCCEEEEECCCCCCCc
Confidence 99999999999998877 44889999988875443
No 56
>KOG2982|consensus
Probab=98.04 E-value=1.1e-06 Score=92.46 Aligned_cols=202 Identities=19% Similarity=0.251 Sum_probs=108.7
Q ss_pred CCCEEEccCCCCCccChh-hh-cCCCCCcEEEccCCCCCCc---hhhhcCCCCCcEEECCCCCCCccChhhhhccccCCe
Q psy5670 416 ALSVLSLDNNELEYIEEN-AL-KNSTSLQDFHLNGNKLTEI---PKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAG 490 (1269)
Q Consensus 416 ~L~~L~Ls~n~i~~~~~~-~~-~~l~~L~~L~Ls~n~l~~l---p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 490 (1269)
.++-|.+.++.|..+... .| ..++.++++||.+|.++.. ...+.++|.|++|+++.|.+...+...-....+|+.
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~ 125 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV 125 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence 444555666665544331 12 3467788888888888754 345678888888888888877654322134567888
Q ss_pred eeccCCcCCC-CChhhhcCCCCCCEEEcCCCccccccc--cccCC-CCCccEEEccccccc---ccCCcCCCCCCCcEEE
Q psy5670 491 LRLTENNISN-ISKGVFEKLSVLTILNLASNKIQKVEA--GTFDN-NSNLVAIRLDGNYLT---DIGGLFPKLPNLVWLN 563 (1269)
Q Consensus 491 L~Ls~n~l~~-i~~~~f~~l~~L~~L~Ls~n~i~~~~~--~~~~~-~~~L~~L~L~~n~l~---~l~~~~~~l~~L~~L~ 563 (1269)
|.|.+..+.- -....+..+|.++.|.++.|.+..+.. ..... .+.+++|.+.+|... ++...-.-.|++..+-
T Consensus 126 lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~ 205 (418)
T KOG2982|consen 126 LVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVF 205 (418)
T ss_pred EEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchhee
Confidence 8888877721 112345677888888888875433211 11111 224444444444221 1111111134455555
Q ss_pred ccCCcCccccc----cccCCCccEEECCCCCcccccccccccccccccEEEcCCCcccc
Q psy5670 564 ISENLLEWFDY----ALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTE 618 (1269)
Q Consensus 564 Ls~n~l~~~~~----~~lp~~L~~L~Ls~n~l~~~~~~~~l~~~~~L~~LdLs~N~l~~ 618 (1269)
+..|.+.+... ..+ +.+..|+|+.|+|.+......+..++.|..|.+++|.+.+
T Consensus 206 v~e~PlK~~s~ek~se~~-p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 206 VCEGPLKTESSEKGSEPF-PSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred eecCcccchhhcccCCCC-CcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 55555543321 111 2344556666666555444445555555666565555543
No 57
>KOG3678|consensus
Probab=97.98 E-value=3.6e-05 Score=85.23 Aligned_cols=119 Identities=23% Similarity=0.432 Sum_probs=91.8
Q ss_pred cCCCCceeEEEEcccCCHHHHHHHHHHhhhcCCCCceEEEecccCCCCCchhHHHHHHHHhcceEEEEecccch------
Q psy5670 1079 DDRDKLFDAFVSYSSKDEAFVAEELAPILENGDPAYKLCLHYREFPVGGYIGDTIVQAVESSRRTIMVLSENFI------ 1152 (1269)
Q Consensus 1079 ~~~~~~yDafvsy~~~d~~~v~~~l~~~Le~~~~~~~l~~~~rd~~~G~~~~~~i~~~i~~Sr~~i~vlS~~~~------ 1152 (1269)
..-++..|+||||....-.-... |+.++-+ -.||++|++-.-+..|. +-+.+...|..+|..|+|+||+.+
T Consensus 607 a~~skq~DVFISYRRstGnQLAS-LiKV~LQ-L~GyrVFIDVdKL~AGK-FdssLlkni~aAkhFiLVLtP~sLDr~lnD 683 (832)
T KOG3678|consen 607 AMLSKQIDVFISYRRSTGNQLAS-LIKVLLQ-LRGYRVFIDVDKLYAGK-FDSSLLKNIQAAKHFILVLTPNSLDRLLND 683 (832)
T ss_pred ccccCCcceEEEeeccccHHHHH-HHHHHHH-hcCceEEEehhhhhccc-ccHHHHHHHHhhheeEEEeCcchHHHHhcc
Confidence 34468899999997665554444 4444444 57999999999999886 467888999999999999999998
Q ss_pred --hhhhhHHHHHHHHHHHhcCCCeEEEEEeCCC----CCCCCCHHHHHHHhcCceEEcC
Q psy5670 1153 --KSEWCRYEFKSAHHQVLRGKKRLIVILLGEV----PQKDLDPDIRLYLKSNTYLQWG 1205 (1269)
Q Consensus 1153 --~s~w~~~e~~~a~~~~~~~~~~~i~i~~~~~----~~~~~~~~l~~~l~~~~~l~w~ 1205 (1269)
..+|...|+..|+.. ++.+|+|+-.-. +.+++|..++.+.+-+. ++|-
T Consensus 684 ~nCeDWVHKEl~~Afe~----~KNIiPI~D~aFE~Pt~ed~iPnDirmi~kyNG-vKWv 737 (832)
T KOG3678|consen 684 DNCEDWVHKELKCAFEH----QKNIIPIFDTAFEFPTKEDQIPNDIRMITKYNG-VKWV 737 (832)
T ss_pred ccHHHHHHHHHHHHHHh----cCCeeeeecccccCCCchhcCcHHHHHHHhccC-eeee
Confidence 357999999988863 477899886632 45678999987776544 7884
No 58
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.97 E-value=2.1e-06 Score=89.18 Aligned_cols=69 Identities=20% Similarity=0.256 Sum_probs=38.9
Q ss_pred ccccCCCCccEEEcCCCCCcccCc----hhhcCCCCCcEEEccCCcccccccccc-------------cCCCCCcEEEcc
Q psy5670 337 ATFSGLHRLVVLNIAYNKMNKLDS----SIFKDLYRLQVLHLENNQIESIHRNTF-------------ASLSNLHTLIMS 399 (1269)
Q Consensus 337 ~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~Ls~n~l~~i~~~~f-------------~~l~~L~~L~Ls 399 (1269)
.++.+|++|+.++||.|.+..-.+ ..++....|.+|.+++|.+..+..+.+ .+-|.|+++...
T Consensus 86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicg 165 (388)
T COG5238 86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICG 165 (388)
T ss_pred HHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEec
Confidence 345566677777777666554332 234455677777777777654433222 234556666666
Q ss_pred CCcccc
Q psy5670 400 NNKLKR 405 (1269)
Q Consensus 400 ~n~l~~ 405 (1269)
.|++..
T Consensus 166 rNRlen 171 (388)
T COG5238 166 RNRLEN 171 (388)
T ss_pred cchhcc
Confidence 665543
No 59
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.91 E-value=3.4e-05 Score=88.08 Aligned_cols=32 Identities=16% Similarity=0.210 Sum_probs=18.4
Q ss_pred cccEEEcCCCccccccCCcccCCccEEEccCcc
Q psy5670 605 RLTYFDASSNKLTELTGNAIPHSVENLFLTNNL 637 (1269)
Q Consensus 605 ~L~~LdLs~N~l~~~~~~~~~~~L~~L~Ls~N~ 637 (1269)
+|++|++++|....++ ..+|.+|+.|++++|.
T Consensus 157 SLk~L~Is~c~~i~LP-~~LP~SLk~L~ls~n~ 188 (426)
T PRK15386 157 SLKTLSLTGCSNIILP-EKLPESLQSITLHIEQ 188 (426)
T ss_pred cccEEEecCCCcccCc-ccccccCcEEEecccc
Confidence 5666666665544322 3466677777776653
No 60
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.90 E-value=4.3e-06 Score=86.93 Aligned_cols=241 Identities=20% Similarity=0.156 Sum_probs=117.0
Q ss_pred CCCCCCEEEccCCCCCccChhh----hcCCCCCcEEEccCCCCC----Cchh-------hhcCCCCCcEEECCCCCCCcc
Q psy5670 413 SLTALSVLSLDNNELEYIEENA----LKNSTSLQDFHLNGNKLT----EIPK-------VLRNLHSLKTLDLGDNLITEI 477 (1269)
Q Consensus 413 ~l~~L~~L~Ls~n~i~~~~~~~----~~~l~~L~~L~Ls~n~l~----~lp~-------~l~~l~~L~~L~Ls~n~i~~~ 477 (1269)
.+..+..++|++|-|......+ +.+-.+|+..+++.-... .++. ++-.||.|+.++||+|.+...
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 3566777778877776544333 333456666666553322 2222 344566677777777666543
Q ss_pred Chhh----hhccccCCeeeccCCcCCCCChhhhcCCCCCCEEEcCCCccccccccccCCCCCccEEEcccccccccC---
Q psy5670 478 NNLS----LNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIG--- 550 (1269)
Q Consensus 478 ~~~~----~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~l~--- 550 (1269)
.+.. ++.-+.|+.|.+++|.++.+..+-++. .|. .|..|+ ...+-+.|+.+....|++..-+
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigk--al~--~la~nK-------Kaa~kp~Le~vicgrNRlengs~~~ 176 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGK--ALF--HLAYNK-------KAADKPKLEVVICGRNRLENGSKEL 176 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCCCCccchhHHHH--HHH--HHHHHh-------hhccCCCceEEEeccchhccCcHHH
Confidence 3322 233455666666666665443221110 000 000110 0112345555555555555332
Q ss_pred --CcCCCCCCCcEEEccCCcCcccccc-------ccCCCccEEECCCCCccccccc---ccccccccccEEEcCCCcccc
Q psy5670 551 --GLFPKLPNLVWLNISENLLEWFDYA-------LIPADLQWLDIHGNQISELGNY---FEIESQLRLTYFDASSNKLTE 618 (1269)
Q Consensus 551 --~~~~~l~~L~~L~Ls~n~l~~~~~~-------~lp~~L~~L~Ls~n~l~~~~~~---~~l~~~~~L~~LdLs~N~l~~ 618 (1269)
..+..-.+|+.+.+..|.|..-+.. ....+|+.|||.+|.++..+.. ..+..++.|+.|.+..|-++.
T Consensus 177 ~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~ 256 (388)
T COG5238 177 SAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSN 256 (388)
T ss_pred HHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhcc
Confidence 1222334566666666665532111 1234666777777766644431 233445567777777776654
Q ss_pred ccCCc--------ccCCccEEEccCcccccccC-Cc------cCCCCCccEEEcCCCCccc
Q psy5670 619 LTGNA--------IPHSVENLFLTNNLISKVQP-YT------FFMKPNLTRVDLVGNRLKN 664 (1269)
Q Consensus 619 ~~~~~--------~~~~L~~L~Ls~N~i~~~~~-~~------f~~~~~L~~LdLs~N~l~~ 664 (1269)
-.... ..++|..|-..+|.+.+-.- .. =..+|-|..|.+.+|+|+.
T Consensus 257 ~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E 317 (388)
T COG5238 257 EGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKE 317 (388)
T ss_pred ccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchh
Confidence 33221 12356666666665533211 10 1134555555555565553
No 61
>KOG2120|consensus
Probab=97.78 E-value=5.1e-07 Score=94.92 Aligned_cols=108 Identities=20% Similarity=0.180 Sum_probs=59.4
Q ss_pred CCCcEEEccCCCCCC-CCcccccCCCCCcEEEeeCCcccccCcccccCCCCCCEEECcCCC-CCccccCcccccCCCCcc
Q psy5670 269 NSLTVLNLSVNNLVN-IPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNE-LTEEWVNAATFSGLHRLV 346 (1269)
Q Consensus 269 ~~L~~L~Ls~n~l~~-l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~l~~L~ 346 (1269)
+.|++|||+...|+. -...++..|.+|+.|.|.++.+.+-....++...+|+.|+|+.+. ++.. -....+.+|+.|.
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n-~~~ll~~scs~L~ 263 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTEN-ALQLLLSSCSRLD 263 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchh-HHHHHHHhhhhHh
Confidence 357777777665552 112334567777777777777766555556667777777777653 2221 1122345667777
Q ss_pred EEEcCCCCCcccCc-hhhcC-CCCCcEEEccCC
Q psy5670 347 VLNIAYNKMNKLDS-SIFKD-LYRLQVLHLENN 377 (1269)
Q Consensus 347 ~L~Ls~n~l~~~~~-~~~~~-l~~L~~L~Ls~n 377 (1269)
+|++++|.+..... ..... -++|..|+++++
T Consensus 264 ~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~ 296 (419)
T KOG2120|consen 264 ELNLSWCFLFTEKVTVAVAHISETLTQLNLSGY 296 (419)
T ss_pred hcCchHhhccchhhhHHHhhhchhhhhhhhhhh
Confidence 77777765543211 11111 135555666554
No 62
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.78 E-value=2.1e-05 Score=60.07 Aligned_cols=38 Identities=37% Similarity=0.468 Sum_probs=18.1
Q ss_pred CCCEEeCCCCCCcccCcccccCCcccCeeecccccCccc
Q psy5670 852 ELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYI 890 (1269)
Q Consensus 852 ~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~i 890 (1269)
+|++|+|++|+|+.+++ .|.+|++|++|+|++|+|+.+
T Consensus 2 ~L~~L~l~~N~i~~l~~-~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPP-ELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHGG-HGTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCCCCcccCc-hHhCCCCCCEEEecCCCCCCC
Confidence 44555555555555543 344555555555555555444
No 63
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.77 E-value=0.00012 Score=83.64 Aligned_cols=31 Identities=19% Similarity=0.198 Sum_probs=14.4
Q ss_pred CCcEEEccCCcCccccccccCCCccEEECCCC
Q psy5670 558 NLVWLNISENLLEWFDYALIPADLQWLDIHGN 589 (1269)
Q Consensus 558 ~L~~L~Ls~n~l~~~~~~~lp~~L~~L~Ls~n 589 (1269)
+|+.|++++|....++ ..+|.+|+.|+++.+
T Consensus 157 SLk~L~Is~c~~i~LP-~~LP~SLk~L~ls~n 187 (426)
T PRK15386 157 SLKTLSLTGCSNIILP-EKLPESLQSITLHIE 187 (426)
T ss_pred cccEEEecCCCcccCc-ccccccCcEEEeccc
Confidence 4455555544433222 234555555555544
No 64
>KOG2982|consensus
Probab=97.77 E-value=9.9e-06 Score=85.44 Aligned_cols=85 Identities=24% Similarity=0.344 Sum_probs=37.7
Q ss_pred CCCccEEEcCCCCCccc--CchhhcCCCCCcEEEccCCcccccccccccCCCCCcEEEccCCcccccC-cccccCCCCCC
Q psy5670 342 LHRLVVLNIAYNKMNKL--DSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIE-SNSLDSLTALS 418 (1269)
Q Consensus 342 l~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~ 418 (1269)
++.++++||.+|.+++- ....+.++|.|+.|+++.|.+.......-....+|+.|-|.+..+.-.. ...+..+|.++
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 34455555555554431 1223445555555555555544322111023445555555554443211 12234455555
Q ss_pred EEEccCCC
Q psy5670 419 VLSLDNNE 426 (1269)
Q Consensus 419 ~L~Ls~n~ 426 (1269)
+|.++.|.
T Consensus 150 elHmS~N~ 157 (418)
T KOG2982|consen 150 ELHMSDNS 157 (418)
T ss_pred hhhhccch
Confidence 55555553
No 65
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.75 E-value=2.4e-05 Score=59.74 Aligned_cols=39 Identities=33% Similarity=0.485 Sum_probs=22.7
Q ss_pred ccCeeecccccCcccChhhhhcCcccceEeccCccceeee
Q psy5670 876 NLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFA 915 (1269)
Q Consensus 876 ~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~ 915 (1269)
+|++|+|++|+|+.+++ .+.++++|++|++++|+|+.++
T Consensus 2 ~L~~L~l~~N~i~~l~~-~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPP-ELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGG-HGTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCCCcccCc-hHhCCCCCCEEEecCCCCCCCc
Confidence 56666666666666654 3556666666666666666554
No 66
>KOG2120|consensus
Probab=97.71 E-value=1.5e-06 Score=91.54 Aligned_cols=83 Identities=25% Similarity=0.282 Sum_probs=41.3
Q ss_pred CCCEEEccCCCCCcc-ChhhhcCCCCCcEEEccCCCCCC-chhhhcCCCCCcEEECCCCC-CCccCh-hhhhccccCCee
Q psy5670 416 ALSVLSLDNNELEYI-EENALKNSTSLQDFHLNGNKLTE-IPKVLRNLHSLKTLDLGDNL-ITEINN-LSLNSLHQLAGL 491 (1269)
Q Consensus 416 ~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~L~Ls~n~-i~~~~~-~~~~~l~~L~~L 491 (1269)
.|+.|||++..|+.- ....+..|.+|+.|.|.++++.+ +...+....+|+.|+++.+. ++.... ..+.+|+.|.+|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 466666666555431 12334556666666666666552 33344555566666666542 222111 123445555555
Q ss_pred eccCCcC
Q psy5670 492 RLTENNI 498 (1269)
Q Consensus 492 ~Ls~n~l 498 (1269)
+|+.|.+
T Consensus 266 NlsWc~l 272 (419)
T KOG2120|consen 266 NLSWCFL 272 (419)
T ss_pred CchHhhc
Confidence 5555544
No 67
>KOG4579|consensus
Probab=97.70 E-value=4.1e-06 Score=78.34 Aligned_cols=103 Identities=18% Similarity=0.187 Sum_probs=81.0
Q ss_pred ccEEEccCcCcccccc--ccccCCCCCCEEeCCCCCCcccCcccccCCcccCeeecccccCcccChhhhhcCcccceEec
Q psy5670 829 LQILFLNSSHVETIHN--KTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQL 906 (1269)
Q Consensus 829 L~~L~l~~n~i~~i~~--~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L 906 (1269)
+..++|+++.+-.|.. ..+.....|+..+|++|.+..+++..-...+.++.|+|++|+|+.+|.+ |..++.|+.|++
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aam~aLr~lNl 107 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE-LAAMPALRSLNL 107 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH-HhhhHHhhhccc
Confidence 4456677776665543 2344566788889999999999885445556889999999999999988 899999999999
Q ss_pred cCccceeeecc-cccCCccEEEeeCCc
Q psy5670 907 DHNRITSFAVW-HLSSQIQSITLTSNP 932 (1269)
Q Consensus 907 ~~N~l~~~~~~-~~~~~l~~l~l~~Np 932 (1269)
+.|.|...+.- +.+.++.+|+..+|.
T Consensus 108 ~~N~l~~~p~vi~~L~~l~~Lds~~na 134 (177)
T KOG4579|consen 108 RFNPLNAEPRVIAPLIKLDMLDSPENA 134 (177)
T ss_pred ccCccccchHHHHHHHhHHHhcCCCCc
Confidence 99999888877 567777778777775
No 68
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=97.60 E-value=0.00054 Score=69.18 Aligned_cols=115 Identities=17% Similarity=0.265 Sum_probs=82.7
Q ss_pred EEEEcccCCH---HHHHHHHHHhhhcCCCCceEEEecccCC--CCCchhHHHHHHHHhcceEEEEecccchh--hhh---
Q psy5670 1087 AFVSYSSKDE---AFVAEELAPILENGDPAYKLCLHYREFP--VGGYIGDTIVQAVESSRRTIMVLSENFIK--SEW--- 1156 (1269)
Q Consensus 1087 afvsy~~~d~---~~v~~~l~~~Le~~~~~~~l~~~~rd~~--~G~~~~~~i~~~i~~Sr~~i~vlS~~~~~--s~w--- 1156 (1269)
|||+||++++ +||.. |...|++ ..|+.+.++..|.. ++.....-+.+.++++.++|+|.||.+.. ..|
T Consensus 3 VfI~Ys~d~~~h~~~V~~-la~~L~~-~~g~~V~lD~~~~~~i~~~g~~~W~~~~~~~ad~Vliv~S~~~~~~~~~~~~~ 80 (150)
T PF08357_consen 3 VFISYSHDSEEHKEWVLA-LAEFLRQ-NCGIDVILDQWELNEIARQGPPRWMERQIREADKVLIVCSPGYKERYDKKADE 80 (150)
T ss_pred EEEEeCCCCHHHHHHHHH-HHHHHHh-ccCCceeecHHhhcccccCCHHHHHHHHHhcCCEEEEEeccchhHHHHHhhcc
Confidence 8999999777 56866 9999996 55999999999994 48889999999999999999999965541 111
Q ss_pred --------hHHH-HHHHHHHH----hcCC--CeEEEEEeCCCCCCCCCHHHHHHHhcCceEEcCCc
Q psy5670 1157 --------CRYE-FKSAHHQV----LRGK--KRLIVILLGEVPQKDLDPDIRLYLKSNTYLQWGDK 1207 (1269)
Q Consensus 1157 --------~~~e-~~~a~~~~----~~~~--~~~i~i~~~~~~~~~~~~~l~~~l~~~~~l~w~~~ 1207 (1269)
+..+ +..++... .++. .|.|+|.++..++..+|+.++. .+.-+|++.
T Consensus 81 ~~~~~~~~~~~d~f~~~l~~~l~~~~~~~~~~kfi~v~f~~~~~~~iP~~l~~----~~~y~lp~d 142 (150)
T PF08357_consen 81 REGGVGTEPQGDLFIAALNLILRDFYQGENNKKFIPVYFDYSDEEDIPEPLRG----LPRYRLPKD 142 (150)
T ss_pred CCCCCCCCcchhHHHHHHHHHHHHHhccccccceeEEEeCCCCcccCCHHHhc----CCcccChHh
Confidence 1101 22333322 2223 7899999988888888886554 455566543
No 69
>KOG4341|consensus
Probab=97.59 E-value=4e-06 Score=92.72 Aligned_cols=16 Identities=19% Similarity=0.133 Sum_probs=9.9
Q ss_pred CchhhhHHHHHHHhhh
Q psy5670 6 GSVFITVLISALGLVS 21 (1269)
Q Consensus 6 ~~~~~~~~~~~~~~~~ 21 (1269)
|....+-+++++...+
T Consensus 76 PpEl~lkvFS~LDtks 91 (483)
T KOG4341|consen 76 PPELLLKVFSMLDTKS 91 (483)
T ss_pred CHHHHHHHHHHHhHHH
Confidence 4556666777776544
No 70
>smart00082 LRRCT Leucine rich repeat C-terminal domain.
Probab=97.35 E-value=0.00013 Score=58.33 Aligned_cols=37 Identities=30% Similarity=0.705 Sum_probs=30.7
Q ss_pred CcccccCCcHHHHHHHHHhccCCcCccCcceeccCCccc
Q psy5670 931 NPWSCDCDFTEKFRDYLQRSRSSVHDISQIRCMTGSEVG 969 (1269)
Q Consensus 931 Np~~C~C~~~~~~~~w~~~~~~~i~~~~~~~C~~p~~~~ 969 (1269)
|||.|||++ .||+.|++. ...+.+...++|.+|+..+
T Consensus 1 NP~~CdC~l-~~~~~w~~~-~~~~~~~~~~~C~~P~~~~ 37 (51)
T smart00082 1 NPFICDCEL-RWLLRWLQA-NEHLQDPVSLRCASPSSLR 37 (51)
T ss_pred CCccCcCCc-hHHHHHHHh-CCccCCCCCCEeCCcHHHH
Confidence 899999997 799999988 3455566789999999874
No 71
>KOG4341|consensus
Probab=97.25 E-value=2.3e-05 Score=86.80 Aligned_cols=62 Identities=18% Similarity=0.208 Sum_probs=33.7
Q ss_pred CCCCCcEEEccCCCCC-Cc-----hhhhcCCCCCcEEECCCCCCC-ccChhhhhccccCCeeeccCCcC
Q psy5670 437 NSTSLQDFHLNGNKLT-EI-----PKVLRNLHSLKTLDLGDNLIT-EINNLSLNSLHQLAGLRLTENNI 498 (1269)
Q Consensus 437 ~l~~L~~L~Ls~n~l~-~l-----p~~l~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l 498 (1269)
+++.|+.|.+++|.+. +. ...-..+..|..+.++++... +.....+..+++|+.+++-+++-
T Consensus 370 ~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 370 NCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD 438 (483)
T ss_pred CCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence 4555666666655322 11 112234456777777777543 33334456667777777776654
No 72
>KOG3665|consensus
Probab=97.07 E-value=0.00023 Score=88.63 Aligned_cols=141 Identities=29% Similarity=0.286 Sum_probs=93.6
Q ss_pred CCCCEEEccCCCCc--cCCcccCCCCCCCcEEECCCCCCCCCCccccCCCCcccCCCcccEEEcCCCCCCccCcccCCCC
Q psy5670 167 QSLESLDLSMNSIW--TLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRL 244 (1269)
Q Consensus 167 ~~L~~L~Ls~n~l~--~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 244 (1269)
.+|++||+++...- .-+...-..+|+|+.|.+++-.+.......+ ...+++|..||+|+.+++.+ ..++++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~l-----c~sFpNL~sLDIS~TnI~nl--~GIS~L 194 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQL-----CASFPNLRSLDISGTNISNL--SGISRL 194 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHH-----hhccCccceeecCCCCccCc--HHHhcc
Confidence 67999999886532 2333444568999999998876654432121 23478999999999999888 468899
Q ss_pred CCCCEEEccCCCCcc-cchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCCcccccCcccccCCCCCCEEE
Q psy5670 245 SRLQELYLQGNILTF-LADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLD 323 (1269)
Q Consensus 245 ~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 323 (1269)
++|+.|.+.+=.+.. ..-..+-+|++|+.||+|.......+. +....-..-..+|+|+.||
T Consensus 195 knLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~------------------ii~qYlec~~~LpeLrfLD 256 (699)
T KOG3665|consen 195 KNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTK------------------IIEQYLECGMVLPELRFLD 256 (699)
T ss_pred ccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchH------------------HHHHHHHhcccCccccEEe
Confidence 999999888766654 222346678999999998875443321 0000011223477888888
Q ss_pred CcCCCCCcc
Q psy5670 324 LSNNELTEE 332 (1269)
Q Consensus 324 L~~n~l~~~ 332 (1269)
.+++.+...
T Consensus 257 cSgTdi~~~ 265 (699)
T KOG3665|consen 257 CSGTDINEE 265 (699)
T ss_pred cCCcchhHH
Confidence 888776653
No 73
>KOG3665|consensus
Probab=96.83 E-value=0.00056 Score=85.34 Aligned_cols=82 Identities=20% Similarity=0.336 Sum_probs=35.3
Q ss_pred CCCCCcEEEccCCcccccC-cccccCCCCCCEEEccCCCCCccChhhhcCCCCCcEEEccCCCCCCch--hhhcCCCCCc
Q psy5670 389 SLSNLHTLIMSNNKLKRIE-SNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIP--KVLRNLHSLK 465 (1269)
Q Consensus 389 ~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~lp--~~l~~l~~L~ 465 (1269)
.+|+|++|.+++-.+.... .....++++|..||+++++++.+ ..++++++|+.|.+.+=.+..-. ..+.++++|+
T Consensus 146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~ 223 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLR 223 (699)
T ss_pred hCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCC
Confidence 3455555555544332221 11223444555555555444444 23444444444444443333221 1234455555
Q ss_pred EEECCCC
Q psy5670 466 TLDLGDN 472 (1269)
Q Consensus 466 ~L~Ls~n 472 (1269)
.||+|..
T Consensus 224 vLDIS~~ 230 (699)
T KOG3665|consen 224 VLDISRD 230 (699)
T ss_pred eeecccc
Confidence 5555544
No 74
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=96.82 E-value=0.0008 Score=91.69 Aligned_cols=83 Identities=19% Similarity=0.328 Sum_probs=57.3
Q ss_pred EcCCCCcccccccccccccCCCCCCCCceEecCCccccccCChhHHhhccccccCCCcccccCccccccccccCCCcccc
Q psy5670 656 DLVGNRLKNINQTALRISPLPSHKNIPDFYIGENPFQCDCNMQWLQSYSVNKERNKPNLVDLDTVTCKLLYNRANPAILL 735 (1269)
Q Consensus 656 dLs~N~l~~l~~~~~~~~~~~~~~~l~~l~l~~Np~~c~c~~~~l~~~~~~~~~~~~~~~~l~~~~c~~~~~~~~~~~~l 735 (1269)
||++|+|+.|+...|. ...+|..|+|++|||.|||++.||..|-.. +...+.....+.|..+. ...+.++
T Consensus 1 DLSnN~LstLp~g~F~-----~L~sL~~LdLsgNPw~CDC~L~WL~~WL~~---~~v~v~~~~~i~CasP~--~LrG~~L 70 (2740)
T TIGR00864 1 DISNNKISTIEEGICA-----NLCNLSEIDLSGNPFECDCGLARLPRWAEE---KGVKVRQPEAALCAGPG--ALAGQPL 70 (2740)
T ss_pred CCCCCcCCccChHHhc-----cCCCceEEEeeCCccccccccHHHHHHHHh---cCccccCCcccCCCCCh--HHCCCCc
Confidence 4667777777766553 345677788889999999999999877441 11223344567897664 3566778
Q ss_pred cccCCCccccccc
Q psy5670 736 KEAHSNQFLCEYE 748 (1269)
Q Consensus 736 ~~~~~~~~~~~~~ 748 (1269)
.++...+|.|..+
T Consensus 71 ~~l~~~d~~C~~~ 83 (2740)
T TIGR00864 71 LGIPLLDSGCDEE 83 (2740)
T ss_pred ccCCcccCCCCCc
Confidence 8888888888743
No 75
>KOG2123|consensus
Probab=96.39 E-value=0.0003 Score=73.91 Aligned_cols=84 Identities=29% Similarity=0.348 Sum_probs=49.8
Q ss_pred CCcEEEccCCcccccCcccccCCCCCCEEEccCCCCCccChhhhcCCCCCcEEEccCCCCCCchh--hhcCCCCCcEEEC
Q psy5670 392 NLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPK--VLRNLHSLKTLDL 469 (1269)
Q Consensus 392 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~--~l~~l~~L~~L~L 469 (1269)
+.++|++.++.+.++. ....++.|+.|.|+-|+|+.+.+ |..|++|++|+|..|.|.++.+ .+.++++|+.|.|
T Consensus 20 ~vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HhhhhcccCCCccHHH--HHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 3444555555554442 23445556666666666665543 5667777777777777666653 4567777777777
Q ss_pred CCCCCCccCh
Q psy5670 470 GDNLITEINN 479 (1269)
Q Consensus 470 s~n~i~~~~~ 479 (1269)
..|.-.+..+
T Consensus 96 ~ENPCc~~ag 105 (388)
T KOG2123|consen 96 DENPCCGEAG 105 (388)
T ss_pred ccCCcccccc
Confidence 7776555433
No 76
>KOG2123|consensus
Probab=96.26 E-value=0.00045 Score=72.68 Aligned_cols=82 Identities=24% Similarity=0.338 Sum_probs=53.8
Q ss_pred CccEEEccCcCccccccccccCCCCCCEEeCCCCCCcccCcccccCCcccCeeecccccCcccChhh-hhcCcccceEec
Q psy5670 828 KLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRT-FLSLTHLKVLQL 906 (1269)
Q Consensus 828 ~L~~L~l~~n~i~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~-f~~l~~L~~L~L 906 (1269)
+.+.|+.-++.|+.|. ....++.|++|.|+-|+|+++.+ |..+++|++|||..|.|.++++-. +.++|+|++|-|
T Consensus 20 ~vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HhhhhcccCCCccHHH--HHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 3444555555555553 33456777777777777777765 667777777777777777776643 356777777777
Q ss_pred cCcccee
Q psy5670 907 DHNRITS 913 (1269)
Q Consensus 907 ~~N~l~~ 913 (1269)
..|.=..
T Consensus 96 ~ENPCc~ 102 (388)
T KOG2123|consen 96 DENPCCG 102 (388)
T ss_pred ccCCccc
Confidence 7765443
No 77
>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins. Their exact function has not, as yet, been defined.
Probab=96.05 E-value=0.027 Score=53.92 Aligned_cols=111 Identities=22% Similarity=0.359 Sum_probs=76.9
Q ss_pred EEEEcccCCHHHHHHHHHHhhhcCCCCceEEEecccCCCCCchhHHHHHHHHhcceEEEEecccchhh----hh------
Q psy5670 1087 AFVSYSSKDEAFVAEELAPILENGDPAYKLCLHYREFPVGGYIGDTIVQAVESSRRTIMVLSENFIKS----EW------ 1156 (1269)
Q Consensus 1087 afvsy~~~d~~~v~~~l~~~Le~~~~~~~l~~~~rd~~~G~~~~~~i~~~i~~Sr~~i~vlS~~~~~s----~w------ 1156 (1269)
+||.|+ +|..+... +...|++ .|+..-+-.....+|.++.|.+.+.++++.-.|+|+||+-+.. .+
T Consensus 2 VFIvhg-~~~~~~~~-v~~~L~~--~~~ep~i~~~~~~~g~tiie~le~~~~~~~faIvl~TpDD~~~~~~~~~~~~~~a 77 (125)
T PF10137_consen 2 VFIVHG-RDLAAAEA-VERFLEK--LGLEPIIWHEQPNLGQTIIEKLEEAADSVDFAIVLFTPDDIGYSRGEEEDLQPRA 77 (125)
T ss_pred EEEEeC-CCHHHHHH-HHHHHHh--CCCceEEeecCCCCCCchHHHHHHHhccCCEEEEEEcccccccccCCcccccccc
Confidence 799999 88888754 8888884 5787777777779999999999999999999999999975522 11
Q ss_pred ---hHHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCHHHHHHHhcCceEEcCCcchH
Q psy5670 1157 ---CRYEFKSAHHQVLRGKKRLIVILLGEVPQKDLDPDIRLYLKSNTYLQWGDKLFW 1210 (1269)
Q Consensus 1157 ---~~~e~~~a~~~~~~~~~~~i~i~~~~~~~~~~~~~l~~~l~~~~~l~w~~~~Fw 1210 (1269)
.-+|+-.++-++ .+.|++++.-+++ ++|.. +...+|++.++..=|
T Consensus 78 R~NVifE~G~f~g~L--Gr~rv~~l~~~~v---~~PSD----l~Gi~~~~~~~~~~w 125 (125)
T PF10137_consen 78 RQNVIFELGLFIGKL--GRERVFILVKGGV---ELPSD----LSGITYIRFDDNRSW 125 (125)
T ss_pred ccceeehhhHHHhhc--CcceEEEEEcCCc---cCCcc----cCCeEEEEcCCCCCC
Confidence 123444433322 3467777775544 33433 455567776655433
No 78
>KOG1947|consensus
Probab=95.88 E-value=0.0019 Score=79.35 Aligned_cols=35 Identities=29% Similarity=0.131 Sum_probs=17.0
Q ss_pred CCCCCEEEccCCC-Cccc-chhhhcCCCCCcEEEccC
Q psy5670 244 LSRLQELYLQGNI-LTFL-ADHALDGLNSLTVLNLSV 278 (1269)
Q Consensus 244 l~~L~~L~L~~n~-l~~~-~~~~~~~l~~L~~L~Ls~ 278 (1269)
++.|+.|.+.++. +... .......++.|+.|++++
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 223 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSG 223 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccC
Confidence 4556666555543 2221 112344556666666655
No 79
>smart00013 LRRNT Leucine rich repeat N-terminal domain.
Probab=95.73 E-value=0.011 Score=42.02 Aligned_cols=31 Identities=39% Similarity=0.933 Sum_probs=27.0
Q ss_pred CCCCceecCCCCCcceeeecCCCCccccCCCCCCCCCc
Q psy5670 769 CPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDAT 806 (1269)
Q Consensus 769 cp~~C~c~~~~~~~~~~v~c~~~~l~~~~p~~~p~~~~ 806 (1269)
||..|.|. ...|+|++.+++.+ |.+||.+++
T Consensus 2 CP~~C~C~------~~~V~C~~~~L~~v-P~~iP~~t~ 32 (33)
T smart00013 2 CPAPCNCS------GTAVDCSGRGLTEV-PLDLPPDTT 32 (33)
T ss_pred cCCCCEEC------CCEeEeCCCCcCcc-CCCCCcccc
Confidence 89999996 56899999999988 999987754
No 80
>KOG2739|consensus
Probab=95.57 E-value=0.0088 Score=63.39 Aligned_cols=39 Identities=33% Similarity=0.599 Sum_probs=18.3
Q ss_pred CCCCcEEEccCCCCCCch--hhhcCCCCCcEEECCCCCCCc
Q psy5670 438 STSLQDFHLNGNKLTEIP--KVLRNLHSLKTLDLGDNLITE 476 (1269)
Q Consensus 438 l~~L~~L~Ls~n~l~~lp--~~l~~l~~L~~L~Ls~n~i~~ 476 (1269)
+++|++|++++|++..+. ..+..+.+|.+|++.+|..+.
T Consensus 90 ~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 90 APNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTN 130 (260)
T ss_pred CCceeEEeecCCccccccccchhhhhcchhhhhcccCCccc
Confidence 355555555555544321 123344455555555554443
No 81
>KOG2739|consensus
Probab=95.41 E-value=0.0084 Score=63.56 Aligned_cols=103 Identities=25% Similarity=0.329 Sum_probs=60.0
Q ss_pred CCCCcEEEccCCcccccccccccCCCCCcEEEccCC--cccccCcccccCCCCCCEEEccCCCCCccC-hhhhcCCCCCc
Q psy5670 366 LYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNN--KLKRIESNSLDSLTALSVLSLDNNELEYIE-ENALKNSTSLQ 442 (1269)
Q Consensus 366 l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n--~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~ 442 (1269)
+..|+.|.+.+..++.+.. |..+++|++|.++.| ++.+-.......+++|++|++++|++..+. -..+..+.+|.
T Consensus 42 ~~~le~ls~~n~gltt~~~--~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~ 119 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTLTN--FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLK 119 (260)
T ss_pred ccchhhhhhhccceeeccc--CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchh
Confidence 3455555555555555432 556677777777777 444333333445577788888877776422 12345566777
Q ss_pred EEEccCCCCCCchh----hhcCCCCCcEEECC
Q psy5670 443 DFHLNGNKLTEIPK----VLRNLHSLKTLDLG 470 (1269)
Q Consensus 443 ~L~Ls~n~l~~lp~----~l~~l~~L~~L~Ls 470 (1269)
.|++..|..+.+-. .|.-+++|++|+-.
T Consensus 120 ~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~ 151 (260)
T KOG2739|consen 120 SLDLFNCSVTNLDDYREKVFLLLPSLKYLDGC 151 (260)
T ss_pred hhhcccCCccccccHHHHHHHHhhhhcccccc
Confidence 88888777665432 34445566655543
No 82
>KOG1947|consensus
Probab=95.19 E-value=0.0045 Score=76.07 Aligned_cols=35 Identities=14% Similarity=0.032 Sum_probs=17.3
Q ss_pred CCCccEEEcCCCC-Cccc-CchhhcCCCCCcEEEccC
Q psy5670 342 LHRLVVLNIAYNK-MNKL-DSSIFKDLYRLQVLHLEN 376 (1269)
Q Consensus 342 l~~L~~L~Ls~n~-l~~~-~~~~~~~l~~L~~L~Ls~ 376 (1269)
++.|+.+.+..+. +... .......++.|+.|++++
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 223 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSG 223 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccC
Confidence 5666666665542 2221 112234456666666655
No 83
>PF01462 LRRNT: Leucine rich repeat N-terminal domain; InterPro: IPR000372 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. LRRs are often flanked by cysteine-rich domains: an N-terminal LRR domain and a C-terminal LRR domain (IPR000483 from INTERPRO). This entry represents the N-terminal LRR domain. ; PDB: 3E6J_A 1W8A_A 2V9S_C 2V9T_B 3TWI_D 3ZYN_A 3ZYO_A 1OOK_G 1QYY_G 1SQ0_B ....
Probab=94.47 E-value=0.028 Score=38.11 Aligned_cols=27 Identities=41% Similarity=1.010 Sum_probs=21.1
Q ss_pred CCCCceecCCCCCcceeeecCCCCccccCCCCCC
Q psy5670 769 CPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIP 802 (1269)
Q Consensus 769 cp~~C~c~~~~~~~~~~v~c~~~~l~~~~p~~~p 802 (1269)
||..|.|. ...|+|++.+|+++ |..||
T Consensus 2 CP~~C~C~------~~~V~C~~~~L~~v-P~~lP 28 (28)
T PF01462_consen 2 CPRPCTCS------GLTVDCSGRGLTAV-PSDLP 28 (28)
T ss_dssp SETTSEEE------TTEEEETTSS-SSS--STS-
T ss_pred cCCCCEec------CCEeECCCCCCCcc-CCCCc
Confidence 89999996 67899999999988 88775
No 84
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.93 E-value=0.026 Score=35.90 Aligned_cols=17 Identities=29% Similarity=0.258 Sum_probs=8.1
Q ss_pred cCeeecccccCcccChh
Q psy5670 877 LRELYLQYNKIIYISNR 893 (1269)
Q Consensus 877 L~~L~L~~N~l~~i~~~ 893 (1269)
|++|+|++|+|+.||+.
T Consensus 2 L~~Ldls~n~l~~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSS 18 (22)
T ss_dssp ESEEEETSSEESEEGTT
T ss_pred ccEEECCCCcCEeCChh
Confidence 44445555544444443
No 85
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=93.59 E-value=0.046 Score=36.37 Aligned_cols=23 Identities=39% Similarity=0.512 Sum_probs=15.9
Q ss_pred CcccCeeecccccCcccChhhhh
Q psy5670 874 LENLRELYLQYNKIIYISNRTFL 896 (1269)
Q Consensus 874 l~~L~~L~L~~N~l~~i~~~~f~ 896 (1269)
|++|+.|+|++|+|+.+++++|.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHcc
Confidence 35667777777777777777664
No 86
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=93.59 E-value=0.046 Score=36.37 Aligned_cols=23 Identities=39% Similarity=0.512 Sum_probs=15.9
Q ss_pred CcccCeeecccccCcccChhhhh
Q psy5670 874 LENLRELYLQYNKIIYISNRTFL 896 (1269)
Q Consensus 874 l~~L~~L~L~~N~l~~i~~~~f~ 896 (1269)
|++|+.|+|++|+|+.+++++|.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHcc
Confidence 35667777777777777777664
No 87
>smart00082 LRRCT Leucine rich repeat C-terminal domain.
Probab=93.58 E-value=0.033 Score=44.24 Aligned_cols=50 Identities=30% Similarity=0.600 Sum_probs=31.4
Q ss_pred CccccccCChhHHhhccccccCCCcccccCccccccccccCCCcccccccCCCcccc
Q psy5670 689 NPFQCDCNMQWLQSYSVNKERNKPNLVDLDTVTCKLLYNRANPAILLKEAHSNQFLC 745 (1269)
Q Consensus 689 Np~~c~c~~~~l~~~~~~~~~~~~~~~~l~~~~c~~~~~~~~~~~~l~~~~~~~~~~ 745 (1269)
|||.|||.+.|+..+... ...+.+.+.+.|..+.... .++.++...+|.|
T Consensus 1 NP~~CdC~l~~~~~w~~~----~~~~~~~~~~~C~~P~~~~---~~l~~~~~~~~~C 50 (51)
T smart00082 1 NPFICDCELRWLLRWLQA----NEHLQDPVSLRCASPSSLR---GPLLELLHSEFKC 50 (51)
T ss_pred CCccCcCCchHHHHHHHh----CCccCCCCCCEeCCcHHHH---hHHHcCCHhhCCC
Confidence 899999999999876431 2233455678897765422 2355555444443
No 88
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.11 E-value=0.038 Score=35.12 Aligned_cols=20 Identities=40% Similarity=0.481 Sum_probs=11.5
Q ss_pred CCEEeCCCCCCcccCcccccC
Q psy5670 853 LIILRLDDNRLTEIRGYEFER 873 (1269)
Q Consensus 853 L~~L~L~~N~l~~i~~~~f~~ 873 (1269)
|++|||++|+|+.|++. |.+
T Consensus 2 L~~Ldls~n~l~~ip~~-~~~ 21 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSS-FSN 21 (22)
T ss_dssp ESEEEETSSEESEEGTT-TTT
T ss_pred ccEEECCCCcCEeCChh-hcC
Confidence 55666666666655554 543
No 89
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=92.19 E-value=0.099 Score=34.75 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=18.1
Q ss_pred CCCCCEEeCCCCCCcccCccccc
Q psy5670 850 LKELIILRLDDNRLTEIRGYEFE 872 (1269)
Q Consensus 850 l~~L~~L~L~~N~l~~i~~~~f~ 872 (1269)
|++|+.|+|++|+|+.+++.+|.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHcc
Confidence 45778888888888888887775
No 90
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=92.19 E-value=0.099 Score=34.75 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=18.1
Q ss_pred CCCCCEEeCCCCCCcccCccccc
Q psy5670 850 LKELIILRLDDNRLTEIRGYEFE 872 (1269)
Q Consensus 850 l~~L~~L~L~~N~l~~i~~~~f~ 872 (1269)
|++|+.|+|++|+|+.+++.+|.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHcc
Confidence 45778888888888888887775
No 91
>KOG4308|consensus
Probab=90.50 E-value=0.0051 Score=73.56 Aligned_cols=14 Identities=36% Similarity=0.555 Sum_probs=7.6
Q ss_pred CccEEEccCccccc
Q psy5670 627 SVENLFLTNNLISK 640 (1269)
Q Consensus 627 ~L~~L~Ls~N~i~~ 640 (1269)
.++++.+++|.+..
T Consensus 291 ~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 291 QLEELSLSNNPLTD 304 (478)
T ss_pred HHHHhhcccCcccc
Confidence 45555555555543
No 92
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=90.40 E-value=0.15 Score=30.01 Aligned_cols=11 Identities=45% Similarity=0.664 Sum_probs=3.0
Q ss_pred cCeeecccccC
Q psy5670 877 LRELYLQYNKI 887 (1269)
Q Consensus 877 L~~L~L~~N~l 887 (1269)
|+.|+|++|+|
T Consensus 3 L~~L~l~~n~L 13 (17)
T PF13504_consen 3 LRTLDLSNNRL 13 (17)
T ss_dssp -SEEEETSS--
T ss_pred cCEEECCCCCC
Confidence 33333333333
No 93
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=90.29 E-value=0.17 Score=29.88 Aligned_cols=17 Identities=41% Similarity=0.724 Sum_probs=11.1
Q ss_pred cccceEeccCccceeee
Q psy5670 899 THLKVLQLDHNRITSFA 915 (1269)
Q Consensus 899 ~~L~~L~L~~N~l~~~~ 915 (1269)
++|++|+|++|+|+.+|
T Consensus 1 ~~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTSLP 17 (17)
T ss_dssp TT-SEEEETSS--SSE-
T ss_pred CccCEEECCCCCCCCCc
Confidence 47899999999988775
No 94
>KOG0473|consensus
Probab=90.27 E-value=0.015 Score=60.06 Aligned_cols=86 Identities=16% Similarity=0.176 Sum_probs=62.6
Q ss_pred ccCCCCCCEEeCCCCCCcccCcccccCCcccCeeecccccCcccChhhhhcCcccceEeccCccceeeeccc-ccCCccE
Q psy5670 847 FNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWH-LSSQIQS 925 (1269)
Q Consensus 847 f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~-~~~~l~~ 925 (1269)
.......+.||++.|++..+.. -|+-++.|..|+|+.|+|..++.+ |..+..+..+++.+|.++..|.++ ..+.+++
T Consensus 38 i~~~kr~tvld~~s~r~vn~~~-n~s~~t~~~rl~~sknq~~~~~~d-~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~ 115 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLGK-NFSILTRLVRLDLSKNQIKFLPKD-AKQQRETVNAASHKNNHSQQPKSQKKEPHPKK 115 (326)
T ss_pred hhccceeeeehhhhhHHHhhcc-chHHHHHHHHHhccHhhHhhChhh-HHHHHHHHHHHhhccchhhCCccccccCCcch
Confidence 3445566777777777777655 467777788888888888777654 456677777778888888777775 6777788
Q ss_pred EEeeCCccc
Q psy5670 926 ITLTSNPWS 934 (1269)
Q Consensus 926 l~l~~Np~~ 934 (1269)
+++-+|||.
T Consensus 116 ~e~k~~~~~ 124 (326)
T KOG0473|consen 116 NEQKKTEFF 124 (326)
T ss_pred hhhccCcch
Confidence 888888753
No 95
>KOG4308|consensus
Probab=88.85 E-value=0.013 Score=70.26 Aligned_cols=64 Identities=30% Similarity=0.369 Sum_probs=28.7
Q ss_pred CCCCcEEECCCCCCCccCh----hhhhcccc-CCeeeccCCcCCCCCh----hhhcCC-CCCCEEEcCCCcccc
Q psy5670 461 LHSLKTLDLGDNLITEINN----LSLNSLHQ-LAGLRLTENNISNISK----GVFEKL-SVLTILNLASNKIQK 524 (1269)
Q Consensus 461 l~~L~~L~Ls~n~i~~~~~----~~~~~l~~-L~~L~Ls~n~l~~i~~----~~f~~l-~~L~~L~Ls~n~i~~ 524 (1269)
..++++|++++|.++...- ..+...+. +.+|++..|.+.+... ..+..+ ..++.++++.|.|+.
T Consensus 203 ~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~ 276 (478)
T KOG4308|consen 203 LSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITE 276 (478)
T ss_pred cccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccc
Confidence 4556666666666553221 12223333 4445666665543311 112222 344555555555543
No 96
>KOG0473|consensus
Probab=79.19 E-value=0.072 Score=55.15 Aligned_cols=84 Identities=17% Similarity=0.149 Sum_probs=68.8
Q ss_pred CCCccEEEccCcCccccccccccCCCCCCEEeCCCCCCcccCcccccCCcccCeeecccccCcccChhhhhcCcccceEe
Q psy5670 826 RKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQ 905 (1269)
Q Consensus 826 ~~~L~~L~l~~n~i~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~ 905 (1269)
....+.||++.|++.... .-|+-++.|..||++.|++..++. .|..+..+..+++.+|.++..|- .|...+++++++
T Consensus 41 ~kr~tvld~~s~r~vn~~-~n~s~~t~~~rl~~sknq~~~~~~-d~~q~~e~~~~~~~~n~~~~~p~-s~~k~~~~k~~e 117 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLVNLG-KNFSILTRLVRLDLSKNQIKFLPK-DAKQQRETVNAASHKNNHSQQPK-SQKKEPHPKKNE 117 (326)
T ss_pred cceeeeehhhhhHHHhhc-cchHHHHHHHHHhccHhhHhhChh-hHHHHHHHHHHHhhccchhhCCc-cccccCCcchhh
Confidence 346677888888776653 457788899999999999988876 67888889999999999988875 578899999999
Q ss_pred ccCccce
Q psy5670 906 LDHNRIT 912 (1269)
Q Consensus 906 L~~N~l~ 912 (1269)
+-+|.++
T Consensus 118 ~k~~~~~ 124 (326)
T KOG0473|consen 118 QKKTEFF 124 (326)
T ss_pred hccCcch
Confidence 9999753
No 97
>COG4271 Predicted nucleotide-binding protein containing TIR -like domain [Transcription]
Probab=76.76 E-value=13 Score=37.88 Aligned_cols=107 Identities=19% Similarity=0.310 Sum_probs=66.8
Q ss_pred eEEEEcccCCHHHHHHHHHHhhhcCCCCceEE--EecccCCCCCchhHHHHHHHHhcceEEEEecccch--------hhh
Q psy5670 1086 DAFVSYSSKDEAFVAEELAPILENGDPAYKLC--LHYREFPVGGYIGDTIVQAVESSRRTIMVLSENFI--------KSE 1155 (1269)
Q Consensus 1086 Dafvsy~~~d~~~v~~~l~~~Le~~~~~~~l~--~~~rd~~~G~~~~~~i~~~i~~Sr~~i~vlS~~~~--------~s~ 1155 (1269)
-|||-|+++- +.+.....||. + +++| +.+-=+..|.++.|.+.+.|+.++.-|++++|+-- +-.
T Consensus 84 kvFvv~ghd~---iArael~allr-d--~~l~~vi~d~~~~~g~~ile~lek~i~~v~FAi~latPDDkgy~~~~~~~k~ 157 (233)
T COG4271 84 KVFVVSGHDA---IARAELEALLR-D--WKLEPVILDGLFSEGQTILESLEKYIAEVKFAIVLATPDDKGYRAVHSREKA 157 (233)
T ss_pred eEEEEeccHH---HHHHHHHHHhh-c--cccceEEecCcccccHHHHHHHHHHhhhceEEEEEecCcccccccccchhhc
Confidence 9999998876 33334445552 3 5544 45555667789999999999999999999999855 112
Q ss_pred h------hHHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCHHHHHHHhcCceEEcC
Q psy5670 1156 W------CRYEFKSAHHQVLRGKKRLIVILLGEVPQKDLDPDIRLYLKSNTYLQWG 1205 (1269)
Q Consensus 1156 w------~~~e~~~a~~~~~~~~~~~i~i~~~~~~~~~~~~~l~~~l~~~~~l~w~ 1205 (1269)
| .-+|+-+.+-++ .|+++++ ++.+-.+-++|.. +...+|+.+.
T Consensus 158 ~praRqNVifELGm~mgrL--gRkrv~I-l~k~~envelPSD----i~Gv~yi~fK 206 (233)
T COG4271 158 FPRARQNVIFELGMFMGRL--GRKRVMI-LMKRDENVELPSD----IAGVTYISFK 206 (233)
T ss_pred cccccccchhhHhhHHhhc--ccceEEE-EecccccccCccc----cCceEEEeec
Confidence 2 134444333322 2344444 4444445556665 4455677774
No 98
>KOG3864|consensus
Probab=76.52 E-value=0.8 Score=47.04 Aligned_cols=78 Identities=23% Similarity=0.264 Sum_probs=34.0
Q ss_pred CCEEEccCCCCCccChhhhcCCCCCcEEEccCCC-CCCch-hhh-cCCCCCcEEECCCC-CCCccChhhhhccccCCeee
Q psy5670 417 LSVLSLDNNELEYIEENALKNSTSLQDFHLNGNK-LTEIP-KVL-RNLHSLKTLDLGDN-LITEINNLSLNSLHQLAGLR 492 (1269)
Q Consensus 417 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~lp-~~l-~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~ 492 (1269)
++.++-++..|..+.-+.+.++++++.|.+.+|. +...- +.+ .-.++|+.|++++| .|++-.-..+..+++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 3344444444444444444444444444444442 11100 001 12355666666655 35544444455555555555
Q ss_pred cc
Q psy5670 493 LT 494 (1269)
Q Consensus 493 Ls 494 (1269)
|.
T Consensus 183 l~ 184 (221)
T KOG3864|consen 183 LY 184 (221)
T ss_pred hc
Confidence 43
No 99
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=76.51 E-value=1.6 Score=28.95 Aligned_cols=16 Identities=56% Similarity=0.546 Sum_probs=7.8
Q ss_pred cccCeeecccccCccc
Q psy5670 875 ENLRELYLQYNKIIYI 890 (1269)
Q Consensus 875 ~~L~~L~L~~N~l~~i 890 (1269)
++|++|+|++|+|+.|
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 3445555555555444
No 100
>smart00013 LRRNT Leucine rich repeat N-terminal domain.
Probab=76.07 E-value=2.2 Score=30.19 Aligned_cols=24 Identities=21% Similarity=0.379 Sum_probs=20.3
Q ss_pred CCCCCCcccccccCCcccccCCCCCCCCceEEEEeeecccCcc
Q psy5670 31 QAPDECKWFAVTSEGAEIEVPSAAEPDQEVALVCKLRTINSEI 73 (1269)
Q Consensus 31 ~cp~~C~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~i~~~~ 73 (1269)
.||..|.|.+. .|.|.++++..+|
T Consensus 1 ~CP~~C~C~~~-------------------~V~C~~~~L~~vP 24 (33)
T smart00013 1 ACPAPCNCSGT-------------------AVDCSGRGLTEVP 24 (33)
T ss_pred CcCCCCEECCC-------------------EeEeCCCCcCccC
Confidence 49999999732 7899999999887
No 101
>KOG3864|consensus
Probab=75.76 E-value=0.48 Score=48.60 Aligned_cols=35 Identities=20% Similarity=0.172 Sum_probs=17.5
Q ss_pred CcEEEeeCCcccccCcccccCCCCCCEEECcCCCC
Q psy5670 295 LKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNEL 329 (1269)
Q Consensus 295 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 329 (1269)
++.++-+++.|....-.-+.+++.++.|.+.+|.-
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~ 137 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKY 137 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccc
Confidence 44555555555444444445555555555555443
No 102
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=74.07 E-value=2.7 Score=27.94 Aligned_cols=17 Identities=29% Similarity=0.466 Sum_probs=11.2
Q ss_pred CCCCEEeCCCCCCcccC
Q psy5670 851 KELIILRLDDNRLTEIR 867 (1269)
Q Consensus 851 ~~L~~L~L~~N~l~~i~ 867 (1269)
++|+.|+|++|+|+.|.
T Consensus 2 ~~L~~L~L~~NkI~~IE 18 (26)
T smart00365 2 TNLEELDLSQNKIKKIE 18 (26)
T ss_pred CccCEEECCCCccceec
Confidence 45667777777776654
No 103
>PF01462 LRRNT: Leucine rich repeat N-terminal domain; InterPro: IPR000372 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. LRRs are often flanked by cysteine-rich domains: an N-terminal LRR domain and a C-terminal LRR domain (IPR000483 from INTERPRO). This entry represents the N-terminal LRR domain. ; PDB: 3E6J_A 1W8A_A 2V9S_C 2V9T_B 3TWI_D 3ZYN_A 3ZYO_A 1OOK_G 1QYY_G 1SQ0_B ....
Probab=70.56 E-value=2.4 Score=28.79 Aligned_cols=24 Identities=17% Similarity=0.382 Sum_probs=18.6
Q ss_pred CCCCCCcccccccCCcccccCCCCCCCCceEEEEeeecccCcc
Q psy5670 31 QAPDECKWFAVTSEGAEIEVPSAAEPDQEVALVCKLRTINSEI 73 (1269)
Q Consensus 31 ~cp~~C~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~i~~~~ 73 (1269)
.||..|.|.+. .|.|..++++.+|
T Consensus 1 ~CP~~C~C~~~-------------------~V~C~~~~L~~vP 24 (28)
T PF01462_consen 1 ACPRPCTCSGL-------------------TVDCSGRGLTAVP 24 (28)
T ss_dssp SSETTSEEETT-------------------EEEETTSS-SSS-
T ss_pred CcCCCCEecCC-------------------EeECCCCCCCccC
Confidence 49999999843 7899999998887
No 104
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=64.45 E-value=4.6 Score=26.77 Aligned_cols=18 Identities=28% Similarity=0.479 Sum_probs=9.6
Q ss_pred CCccEEECCCCCcccccc
Q psy5670 579 ADLQWLDIHGNQISELGN 596 (1269)
Q Consensus 579 ~~L~~L~Ls~n~l~~~~~ 596 (1269)
++|++|++++|+++++|.
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 445555555555555543
No 105
>KOG4242|consensus
Probab=63.21 E-value=21 Score=41.64 Aligned_cols=59 Identities=29% Similarity=0.341 Sum_probs=34.8
Q ss_pred CCEEEccCCCCCccCh---hhhcCCCCCcEEEccCCCCCCc-----hhhhcCCCCCcEEECCCCCCC
Q psy5670 417 LSVLSLDNNELEYIEE---NALKNSTSLQDFHLNGNKLTEI-----PKVLRNLHSLKTLDLGDNLIT 475 (1269)
Q Consensus 417 L~~L~Ls~n~i~~~~~---~~~~~l~~L~~L~Ls~n~l~~l-----p~~l~~l~~L~~L~Ls~n~i~ 475 (1269)
+..+.++.+....-.. ..+..-+.+.+|++++|..... |..+..-..+..+..+.|...
T Consensus 415 l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p~ 481 (553)
T KOG4242|consen 415 LAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLPE 481 (553)
T ss_pred ccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCcc
Confidence 5566666666553222 3344567788888888877643 334444455666666666543
No 106
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=63.03 E-value=3.8 Score=27.14 Aligned_cols=18 Identities=33% Similarity=0.493 Sum_probs=12.2
Q ss_pred cccceEeccCccceeeec
Q psy5670 899 THLKVLQLDHNRITSFAV 916 (1269)
Q Consensus 899 ~~L~~L~L~~N~l~~~~~ 916 (1269)
++|+.|+.++|+|+++|.
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 456677777777777665
No 107
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=59.47 E-value=3.5 Score=26.63 Aligned_cols=13 Identities=46% Similarity=0.534 Sum_probs=4.8
Q ss_pred ccCeeecccccCc
Q psy5670 876 NLRELYLQYNKII 888 (1269)
Q Consensus 876 ~L~~L~L~~N~l~ 888 (1269)
+|++|+|++|+|+
T Consensus 3 ~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 3 NLETLDLSNNQIT 15 (24)
T ss_dssp T-SEEE-TSSBEH
T ss_pred CCCEEEccCCcCC
Confidence 3444444444443
No 108
>KOG3763|consensus
Probab=58.01 E-value=5.6 Score=47.20 Aligned_cols=62 Identities=23% Similarity=0.286 Sum_probs=36.6
Q ss_pred cccCeeecccccCcccChh--hhhcCcccceEeccCc--cceeeecc--cccCCccEEEeeCCccccc
Q psy5670 875 ENLRELYLQYNKIIYISNR--TFLSLTHLKVLQLDHN--RITSFAVW--HLSSQIQSITLTSNPWSCD 936 (1269)
Q Consensus 875 ~~L~~L~L~~N~l~~i~~~--~f~~l~~L~~L~L~~N--~l~~~~~~--~~~~~l~~l~l~~Np~~C~ 936 (1269)
+.+..+.|++|+|..++.- .=..-|+|++|+|++| .+....+- +....|++|-+.|||+.=+
T Consensus 218 p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred cceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccc
Confidence 3444455555555544331 1123577888888888 44433332 3556788999999997433
No 109
>COG4916 Uncharacterized protein containing a TIR (Toll-Interleukin 1-resistance) domain [Function unknown]
Probab=55.40 E-value=15 Score=38.89 Aligned_cols=124 Identities=10% Similarity=0.004 Sum_probs=71.4
Q ss_pred CCCCceeEEEEcccCCHHHHHHHHHHhhhcCCCCceEEEecccC----CCCCchhHHHHHHH--HhcceEEEEecccchh
Q psy5670 1080 DRDKLFDAFVSYSSKDEAFVAEELAPILENGDPAYKLCLHYREF----PVGGYIGDTIVQAV--ESSRRTIMVLSENFIK 1153 (1269)
Q Consensus 1080 ~~~~~yDafvsy~~~d~~~v~~~l~~~Le~~~~~~~l~~~~rd~----~~G~~~~~~i~~~i--~~Sr~~i~vlS~~~~~ 1153 (1269)
...|.||+=+||..+-+..|.. .-..+|... +=...+++-|. .|| +. +.+..-+ .+||-+++.+..+|..
T Consensus 173 ~~~~~~DiG~SFaGEAR~LVEq-V~~E~~~~~-~p~~~FYD~~~~~~L~~~-sL-~~~L~~~Y~~rC~~~~VF~~~~Y~~ 248 (329)
T COG4916 173 SSEKPVDSGISFAGEARNLVEQ-VQTEHSGLD-IPTRRFYDLLVAHPLYPG-SL-VSTLDPGYDIRCVVTTVFNTGSYIC 248 (329)
T ss_pred ccccccceeeEeehhhhhHHHH-HHHhhhccc-CCceeeeechhhccccCc-cH-HHhcccccCceEEEEEEEeCCceEE
Confidence 4568899999999999988754 555566321 22222333222 222 22 3344444 4588888889999999
Q ss_pred hhhhHHHHHHHHHHHhcCC-CeEEEEEeCCCCCCCCCHHHHHHHhcCceEEcCCcchHHHHHHh
Q psy5670 1154 SEWCRYEFKSAHHQVLRGK-KRLIVILLGEVPQKDLDPDIRLYLKSNTYLQWGDKLFWEKLKFA 1216 (1269)
Q Consensus 1154 s~w~~~e~~~a~~~~~~~~-~~~i~i~~~~~~~~~~~~~l~~~l~~~~~l~w~~~~Fw~~l~~~ 1216 (1269)
..||..|.+..-.....+. -++..+-.++. ......++..+++- +.||.....+
T Consensus 249 K~~c~~E~~~~r~~~~~d~~~rI~~~~~d~~-------a~dG~~~T~G~iD~--~~~~~~e~~~ 303 (329)
T COG4916 249 KSTCHIEGLEGRLNPILDTGFRIKYLYADNI-------AIDGGKQTPGHFDI--DSPIELEDSN 303 (329)
T ss_pred eeeeccchhhccccccccccceEEEEecCCc-------cccccccCCceeec--CCcchhhhhC
Confidence 9999999986544322222 33333333322 22334555556543 4567665443
No 110
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=52.17 E-value=49 Score=29.95 Aligned_cols=8 Identities=25% Similarity=0.883 Sum_probs=3.4
Q ss_pred CCHHHHHH
Q psy5670 1094 KDEAFVAE 1101 (1269)
Q Consensus 1094 ~d~~~v~~ 1101 (1269)
+|+.|+.+
T Consensus 83 DDDGFIED 90 (102)
T PF15176_consen 83 DDDGFIED 90 (102)
T ss_pred CCCccccc
Confidence 34444443
No 111
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=51.53 E-value=10 Score=28.75 Aligned_cols=35 Identities=17% Similarity=0.297 Sum_probs=19.2
Q ss_pred hhHHHHHHHhhhh-hhh-ccccCCC--CCCCcccccccC
Q psy5670 10 ITVLISALGLVSA-SIS-KALRYQA--PDECKWFAVTSE 44 (1269)
Q Consensus 10 ~~~~~~~~~~~~~-~~~-~~~~~~c--p~~C~c~~~~~~ 44 (1269)
..+|+.|...+.. ..+ ...|..- +++|.|.||+|+
T Consensus 5 ~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 5 RQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred HHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence 3466666655442 323 4556554 799999999884
No 112
>KOG4242|consensus
Probab=42.88 E-value=86 Score=36.96 Aligned_cols=59 Identities=20% Similarity=0.148 Sum_probs=36.9
Q ss_pred CCcEEEccCCCCCCchh----hhcCCCCCcEEECCCCCCCccCh----hhhhccccCCeeeccCCcC
Q psy5670 440 SLQDFHLNGNKLTEIPK----VLRNLHSLKTLDLGDNLITEINN----LSLNSLHQLAGLRLTENNI 498 (1269)
Q Consensus 440 ~L~~L~Ls~n~l~~lp~----~l~~l~~L~~L~Ls~n~i~~~~~----~~~~~l~~L~~L~Ls~n~l 498 (1269)
-+..+.++.+.+..-+. .+..-+.+..|++++|....... ..+..-..+..+..+.|..
T Consensus 414 ~l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p 480 (553)
T KOG4242|consen 414 VLAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLP 480 (553)
T ss_pred cccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCc
Confidence 46778888888774433 34556789999999998765432 2333333455555555544
No 113
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=39.87 E-value=23 Score=23.97 Aligned_cols=15 Identities=40% Similarity=0.760 Sum_probs=11.3
Q ss_pred CCccEEEcCCCCccc
Q psy5670 650 PNLTRVDLVGNRLKN 664 (1269)
Q Consensus 650 ~~L~~LdLs~N~l~~ 664 (1269)
++|++|||++|.|..
T Consensus 2 ~~L~~LdL~~N~i~~ 16 (28)
T smart00368 2 PSLRELDLSNNKLGD 16 (28)
T ss_pred CccCEEECCCCCCCH
Confidence 467888888887763
No 114
>PF13271 DUF4062: Domain of unknown function (DUF4062)
Probab=39.58 E-value=1.3e+02 Score=26.64 Aligned_cols=63 Identities=11% Similarity=0.046 Sum_probs=45.2
Q ss_pred EEEEcccCCHHHHHHHHHHhhhcCCCCceEEEecccCCCCCchhHHHHHHHHhcceEEEEecccc
Q psy5670 1087 AFVSYSSKDEAFVAEELAPILENGDPAYKLCLHYREFPVGGYIGDTIVQAVESSRRTIMVLSENF 1151 (1269)
Q Consensus 1087 afvsy~~~d~~~v~~~l~~~Le~~~~~~~l~~~~rd~~~G~~~~~~i~~~i~~Sr~~i~vlS~~~ 1151 (1269)
+|||-+-.|-+-..+.+...+.. .|+.-...+.=-..+....+...+.|++|+-.|.++-..|
T Consensus 2 VFiSSt~~Dl~~eR~~l~~~i~~--~~~~~~~~e~~~a~~~~~~~~cl~~v~~cDifI~ilG~rY 64 (83)
T PF13271_consen 2 VFISSTFRDLKEERDALIEAIRR--LGCEPVGMEFFPASDQSPLEICLKEVDECDIFILILGNRY 64 (83)
T ss_pred EEEecChhhHHHHHHHHHHHHHH--CCCeeeeeeeecCCCCCHHHHHHHHHhhCCEEEEeecccc
Confidence 79999888877667777777764 4553322222122356778999999999999999998876
No 115
>KOG3763|consensus
Probab=33.90 E-value=26 Score=41.95 Aligned_cols=13 Identities=54% Similarity=0.565 Sum_probs=7.8
Q ss_pred CCCCCcEEECCCC
Q psy5670 460 NLHSLKTLDLGDN 472 (1269)
Q Consensus 460 ~l~~L~~L~Ls~n 472 (1269)
..|+|+.|+|++|
T Consensus 242 ~apklk~L~LS~N 254 (585)
T KOG3763|consen 242 IAPKLKTLDLSHN 254 (585)
T ss_pred hcchhheeecccc
Confidence 3456666666666
No 116
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=32.54 E-value=2.1e+02 Score=26.84 Aligned_cols=83 Identities=18% Similarity=0.107 Sum_probs=53.0
Q ss_pred ccCCHHHHHHHHHHhhhcCCCCceEEEecc-cCC-------CCCchhHHHHHHHHhcceEEEEecccchhhhhhHHHHHH
Q psy5670 1092 SSKDEAFVAEELAPILENGDPAYKLCLHYR-EFP-------VGGYIGDTIVQAVESSRRTIMVLSENFIKSEWCRYEFKS 1163 (1269)
Q Consensus 1092 ~~~d~~~v~~~l~~~Le~~~~~~~l~~~~r-d~~-------~G~~~~~~i~~~i~~Sr~~i~vlS~~~~~s~w~~~e~~~ 1163 (1269)
+.+...|+ +.+...|++ .|+.++.+.+ +.. ....|.+.=.+.|++|.-+|+++...- .+.-..+|+-.
T Consensus 9 ~~~~~~~~-~~~~~~L~~--~g~~v~~P~~~~~~~~~~~~~~~~~i~~~d~~~i~~~D~via~l~~~~-~d~Gt~~ElG~ 84 (113)
T PF05014_consen 9 SEEQKARV-ERLREALEK--NGFEVYSPQDNDENDEEDSQEWAREIFERDLEGIRECDIVIANLDGFR-PDSGTAFELGY 84 (113)
T ss_dssp SHHHHHHH-HHHHHHHHT--TTTEEEGGCTCSSS--TTSHHCHHHHHHHHHHHHHHSSEEEEEECSSS---HHHHHHHHH
T ss_pred CHHHHHHH-HHHHHHHHh--CCCEEEeccccccccccccchHHHHHHHHHHHHHHHCCEEEEECCCCC-CCCcHHHHHHH
Confidence 44445566 459999995 6788876662 222 222355666779999999999999855 45566788888
Q ss_pred HHHHHhcCCCeEEEEEeCCC
Q psy5670 1164 AHHQVLRGKKRLIVILLGEV 1183 (1269)
Q Consensus 1164 a~~~~~~~~~~~i~i~~~~~ 1183 (1269)
|.. .++++|. +.++.
T Consensus 85 A~a----lgkpv~~-~~~d~ 99 (113)
T PF05014_consen 85 AYA----LGKPVIL-LTEDD 99 (113)
T ss_dssp HHH----TTSEEEE-EECCC
T ss_pred HHH----CCCEEEE-EEcCC
Confidence 765 2344444 44444
No 117
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=31.27 E-value=87 Score=23.00 Aligned_cols=13 Identities=8% Similarity=0.460 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q psy5670 1032 LLIILVSASFVLV 1044 (1269)
Q Consensus 1032 ~~~~~~~~~~~~~ 1044 (1269)
+++++++++++++
T Consensus 8 IIv~V~vg~~iii 20 (38)
T PF02439_consen 8 IIVAVVVGMAIII 20 (38)
T ss_pred HHHHHHHHHHHHH
Confidence 3334444443333
No 118
>PF15050 SCIMP: SCIMP protein
Probab=26.29 E-value=1.2e+02 Score=28.38 Aligned_cols=13 Identities=46% Similarity=0.503 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHH
Q psy5670 1043 LVLLLILIIIYRQ 1055 (1269)
Q Consensus 1043 ~~~~~~~~~~~~~ 1055 (1269)
+++.+++|.++|+
T Consensus 21 ~~lglIlyCvcR~ 33 (133)
T PF15050_consen 21 VVLGLILYCVCRW 33 (133)
T ss_pred HHHHHHHHHHHHH
Confidence 3344455556654
No 119
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=22.07 E-value=1.4e+02 Score=33.57 Aligned_cols=7 Identities=29% Similarity=1.241 Sum_probs=3.6
Q ss_pred ccccCCh
Q psy5670 692 QCDCNMQ 698 (1269)
Q Consensus 692 ~c~c~~~ 698 (1269)
.|.|++.
T Consensus 21 LcECely 27 (299)
T PF02009_consen 21 LCECELY 27 (299)
T ss_pred hhhhccc
Confidence 4555543
Done!