Query psy5670
Match_columns 1269
No_of_seqs 986 out of 7713
Neff 9.2
Searched_HMMs 29240
Date Fri Aug 16 23:38:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5670.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5670hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3j0a_A TOLL-like receptor 5; m 100.0 1.2E-89 4.2E-94 895.8 54.4 786 171-1231 8-827 (844)
2 3rgz_A Protein brassinosteroid 100.0 4.9E-61 1.7E-65 619.8 41.6 715 9-936 13-742 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 5.3E-60 1.8E-64 605.2 46.9 619 170-970 7-659 (680)
4 1ziw_A TOLL-like receptor 3; i 100.0 4.1E-57 1.4E-61 578.4 47.1 622 61-738 8-665 (680)
5 3rgz_A Protein brassinosteroid 100.0 1.3E-55 4.3E-60 569.3 43.1 666 122-939 40-722 (768)
6 3t6q_A CD180 antigen; protein- 100.0 9.5E-54 3.3E-58 539.8 50.4 562 273-973 16-598 (606)
7 3vq2_A TLR4, TOLL-like recepto 100.0 4.2E-52 1.4E-56 524.7 41.7 562 248-970 14-593 (606)
8 3t6q_A CD180 antigen; protein- 100.0 4.1E-51 1.4E-55 515.8 42.6 576 30-726 2-591 (606)
9 3vq2_A TLR4, TOLL-like recepto 100.0 2E-48 6.7E-53 491.2 42.0 533 167-726 32-589 (606)
10 4g8a_A TOLL-like receptor 4; l 100.0 2.3E-47 7.8E-52 484.9 41.8 563 273-970 35-615 (635)
11 3j0a_A TOLL-like receptor 5; m 100.0 2.9E-47 9.9E-52 496.5 40.6 534 61-703 8-571 (844)
12 2z63_A TOLL-like receptor 4, v 100.0 3.2E-46 1.1E-50 467.7 37.7 537 249-968 11-563 (570)
13 2z81_A CD282 antigen, TOLL-lik 100.0 1.3E-44 4.5E-49 450.7 35.1 516 269-967 5-541 (549)
14 2z81_A CD282 antigen, TOLL-lik 100.0 3.8E-44 1.3E-48 446.5 37.8 492 166-703 4-522 (549)
15 4g8a_A TOLL-like receptor 4; l 100.0 5.2E-44 1.8E-48 454.0 37.9 572 61-738 35-621 (635)
16 2z63_A TOLL-like receptor 4, v 100.0 9.3E-43 3.2E-47 436.3 36.7 491 167-701 28-540 (570)
17 2z7x_B TOLL-like receptor 1, v 100.0 1.3E-42 4.3E-47 429.5 26.9 477 320-968 3-513 (520)
18 2z7x_B TOLL-like receptor 1, v 100.0 6.7E-42 2.3E-46 423.0 27.7 462 170-704 3-494 (520)
19 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.7E-40 9.2E-45 412.1 28.5 154 806-964 380-546 (562)
20 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.7E-39 5.8E-44 404.8 33.7 463 168-702 32-520 (562)
21 4eco_A Uncharacterized protein 100.0 4.4E-40 1.5E-44 414.4 21.1 322 243-573 247-603 (636)
22 4ecn_A Leucine-rich repeat pro 100.0 1.4E-38 5E-43 405.8 30.6 436 84-545 323-862 (876)
23 3v47_A TOLL-like receptor 5B a 100.0 3.3E-37 1.1E-41 374.3 33.1 417 443-968 14-440 (455)
24 4ecn_A Leucine-rich repeat pro 100.0 1.6E-37 5.3E-42 396.3 28.5 443 221-696 323-870 (876)
25 4eco_A Uncharacterized protein 100.0 3.5E-37 1.2E-41 388.0 26.6 420 221-693 81-601 (636)
26 3v47_A TOLL-like receptor 5B a 100.0 5.4E-35 1.9E-39 354.8 27.7 384 30-479 2-412 (455)
27 1jl5_A Outer protein YOPM; leu 100.0 1.5E-35 5.2E-40 356.5 22.4 407 221-693 11-430 (454)
28 1jl5_A Outer protein YOPM; leu 100.0 7.2E-34 2.5E-38 341.8 29.5 416 166-642 10-432 (454)
29 1o6v_A Internalin A; bacterial 100.0 1.1E-32 3.7E-37 334.9 35.6 348 165-550 44-391 (466)
30 2j67_A TOLL like receptor 10; 100.0 2.8E-35 9.5E-40 299.8 8.8 158 1053-1218 12-178 (178)
31 1o6v_A Internalin A; bacterial 100.0 5.1E-32 1.8E-36 328.9 35.2 346 189-571 44-389 (466)
32 2id5_A Lingo-1, leucine rich r 100.0 6.9E-33 2.4E-37 338.2 26.9 333 31-429 2-334 (477)
33 2id5_A Lingo-1, leucine rich r 100.0 1.4E-31 4.6E-36 326.8 30.4 301 222-547 33-333 (477)
34 3bz5_A Internalin-J, INLJ; leu 100.0 2.7E-31 9.1E-36 319.8 29.1 169 161-357 37-205 (457)
35 3bz5_A Internalin-J, INLJ; leu 100.0 2E-31 6.8E-36 320.9 26.4 346 220-664 41-388 (457)
36 1t3g_A X-linked interleukin-1 100.0 8.4E-33 2.9E-37 277.1 8.8 136 1083-1219 1-159 (159)
37 1fyx_A TOLL-like receptor 2; b 100.0 5.8E-33 2E-37 276.1 6.6 138 1081-1218 2-148 (149)
38 3o6n_A APL1; leucine-rich repe 100.0 2.3E-30 8E-35 307.0 27.0 310 167-525 45-354 (390)
39 3o6n_A APL1; leucine-rich repe 100.0 4.1E-30 1.4E-34 304.9 28.0 308 221-548 45-353 (390)
40 4fmz_A Internalin; leucine ric 100.0 1.6E-29 5.3E-34 295.0 31.3 283 188-498 41-323 (347)
41 4fmz_A Internalin; leucine ric 100.0 2.1E-29 7.1E-34 293.9 31.3 305 164-499 41-346 (347)
42 3oja_B Anopheles plasmodium-re 100.0 2E-29 6.7E-34 315.7 26.9 310 167-525 51-360 (597)
43 3oja_B Anopheles plasmodium-re 100.0 5.9E-29 2E-33 311.3 28.5 308 221-548 51-359 (597)
44 3zyj_A Leucine-rich repeat-con 100.0 1.6E-28 5.5E-33 295.8 28.7 278 561-973 47-329 (440)
45 1xku_A Decorin; proteoglycan, 100.0 4E-28 1.4E-32 280.7 28.7 291 191-520 31-329 (330)
46 3zyi_A Leucine-rich repeat-con 100.0 3.7E-28 1.3E-32 293.7 29.2 276 561-971 58-338 (452)
47 2ft3_A Biglycan; proteoglycan, 100.0 2.8E-28 9.6E-33 282.2 25.0 289 192-520 34-330 (332)
48 2ft3_A Biglycan; proteoglycan, 100.0 5.7E-28 1.9E-32 279.6 26.6 294 168-497 34-331 (332)
49 1xku_A Decorin; proteoglycan, 100.0 3.5E-27 1.2E-31 272.7 29.6 297 166-497 30-330 (330)
50 2js7_A Myeloid differentiation 100.0 1.4E-29 4.8E-34 254.0 7.2 137 1078-1220 10-152 (160)
51 2z66_A Variable lymphocyte rec 100.0 1.1E-27 3.8E-32 273.9 21.4 165 805-970 128-296 (306)
52 2v9t_B SLIT homolog 2 protein 100.0 7.6E-28 2.6E-32 260.0 17.9 197 767-974 3-201 (220)
53 2z80_A TOLL-like receptor 2, v 100.0 1E-27 3.4E-32 280.1 19.8 135 831-968 202-346 (353)
54 1p9a_G Platelet glycoprotein I 99.9 5.8E-27 2E-31 264.5 23.3 218 600-951 6-224 (290)
55 1z7x_W Ribonuclease inhibitor; 99.9 2.8E-29 9.7E-34 305.1 3.9 352 221-572 3-413 (461)
56 3zyi_A Leucine-rich repeat-con 99.9 5.2E-27 1.8E-31 283.7 23.1 264 25-330 39-303 (452)
57 3zyj_A Leucine-rich repeat-con 99.9 7.4E-27 2.5E-31 281.3 22.8 263 26-330 29-292 (440)
58 1z7x_W Ribonuclease inhibitor; 99.9 8.6E-29 3E-33 300.8 3.6 380 293-693 3-441 (461)
59 1ozn_A Reticulon 4 receptor; N 99.9 5.1E-26 1.7E-30 257.1 23.5 259 607-974 14-274 (285)
60 2v70_A SLIT-2, SLIT homolog 2 99.9 1.4E-26 4.7E-31 250.2 17.7 197 767-974 3-202 (220)
61 2o6q_A Variable lymphocyte rec 99.9 9.6E-26 3.3E-30 252.4 23.0 232 605-966 17-251 (270)
62 1ogq_A PGIP-2, polygalacturona 99.9 6.1E-26 2.1E-30 259.7 19.0 289 10-354 8-302 (313)
63 2z66_A Variable lymphocyte rec 99.9 7.1E-26 2.4E-30 258.8 15.9 256 32-330 1-261 (306)
64 2z80_A TOLL-like receptor 2, v 99.9 5.8E-25 2E-29 256.6 21.5 282 165-478 29-317 (353)
65 2z62_A TOLL-like receptor 4, v 99.9 2E-24 7E-29 242.7 22.1 161 805-968 102-269 (276)
66 1ogq_A PGIP-2, polygalacturona 99.9 1.2E-24 4.2E-29 248.8 18.1 248 221-497 50-302 (313)
67 3g06_A SSPH2 (leucine-rich rep 99.9 1.1E-23 3.6E-28 260.7 27.4 243 392-670 62-304 (622)
68 1ozn_A Reticulon 4 receptor; N 99.9 4.5E-24 1.5E-28 241.1 20.3 205 246-452 33-238 (285)
69 3ogk_B Coronatine-insensitive 99.9 2.7E-26 9.1E-31 288.3 1.9 342 220-566 163-547 (592)
70 3g06_A SSPH2 (leucine-rich rep 99.9 4.5E-23 1.5E-27 255.1 30.3 270 166-486 39-308 (622)
71 2wfh_A SLIT homolog 2 protein 99.9 6.5E-24 2.2E-28 223.8 15.6 170 767-972 2-173 (193)
72 3e6j_A Variable lymphocyte rec 99.9 2.8E-23 9.5E-28 225.9 19.9 190 769-966 13-212 (229)
73 3ogk_B Coronatine-insensitive 99.9 3.1E-25 1E-29 278.6 4.6 374 164-569 70-500 (592)
74 3m19_A Variable lymphocyte rec 99.9 4.4E-23 1.5E-27 228.0 20.3 144 823-967 79-234 (251)
75 3o53_A Protein LRIM1, AGAP0063 99.9 3E-24 1E-28 246.3 11.3 260 222-496 11-272 (317)
76 2xot_A Amphoterin-induced prot 99.9 1.3E-23 4.6E-28 245.4 16.8 196 766-968 9-237 (361)
77 3ub2_A TOLL/interleukin-1 rece 99.9 1.2E-24 4.1E-29 214.3 5.4 132 1080-1217 6-138 (146)
78 3o53_A Protein LRIM1, AGAP0063 99.9 4.5E-24 1.5E-28 244.8 8.1 258 248-544 13-272 (317)
79 2o6s_A Variable lymphocyte rec 99.9 2.9E-22 1E-26 214.6 18.6 180 769-955 1-182 (208)
80 2xwt_C Thyrotropin receptor; s 99.9 3.2E-22 1.1E-26 219.4 17.1 212 30-286 2-222 (239)
81 2p1m_B Transport inhibitor res 99.9 3.6E-24 1.2E-28 269.0 -0.6 153 414-567 371-541 (594)
82 1w8a_A SLIT protein; signaling 99.9 7.3E-22 2.5E-26 208.2 16.1 169 768-970 1-171 (192)
83 2p1m_B Transport inhibitor res 99.9 7.2E-24 2.5E-28 266.3 -0.9 204 365-570 287-519 (594)
84 1wwl_A Monocyte differentiatio 99.9 7.1E-23 2.4E-27 234.3 6.9 249 266-548 40-310 (312)
85 1wwl_A Monocyte differentiatio 99.9 9.2E-23 3.1E-27 233.3 7.6 247 340-618 40-310 (312)
86 4fcg_A Uncharacterized protein 99.9 3.1E-21 1.1E-25 221.9 19.4 234 221-476 81-315 (328)
87 3oja_A Leucine-rich immune mol 99.9 6.3E-22 2.2E-26 240.2 13.5 235 245-494 34-270 (487)
88 3oja_A Leucine-rich immune mol 99.9 6.6E-22 2.2E-26 240.1 12.8 217 166-404 33-250 (487)
89 2o6q_A Variable lymphocyte rec 99.9 2E-20 6.8E-25 209.2 23.7 153 168-329 17-169 (270)
90 1p9a_G Platelet glycoprotein I 99.9 8.9E-21 3E-25 213.8 20.7 203 363-570 6-208 (290)
91 2z62_A TOLL-like receptor 4, v 99.9 7.8E-21 2.7E-25 213.4 20.0 224 274-523 12-237 (276)
92 3rfs_A Internalin B, repeat mo 99.9 3E-21 1E-25 216.0 15.7 147 805-951 87-235 (272)
93 4fcg_A Uncharacterized protein 99.9 6.6E-21 2.3E-25 219.1 18.2 231 293-545 81-312 (328)
94 4ay9_X Follicle-stimulating ho 99.8 6.6E-21 2.3E-25 221.6 15.5 251 31-327 1-256 (350)
95 2xwt_C Thyrotropin receptor; s 99.8 7.3E-21 2.5E-25 208.6 13.8 196 368-567 32-236 (239)
96 3goz_A Leucine-rich repeat-con 99.8 1.9E-21 6.6E-26 227.4 7.0 252 298-571 3-298 (362)
97 2o6r_A Variable lymphocyte rec 99.8 3.4E-20 1.2E-24 192.9 15.5 166 769-967 1-168 (177)
98 3rfs_A Internalin B, repeat mo 99.8 4.3E-20 1.5E-24 206.6 14.9 179 164-354 38-216 (272)
99 3goz_A Leucine-rich repeat-con 99.8 1.3E-20 4.3E-25 220.4 10.9 250 250-525 3-299 (362)
100 1h6u_A Internalin H; cell adhe 99.8 1E-19 3.6E-24 207.2 15.9 242 421-699 25-272 (308)
101 1h6u_A Internalin H; cell adhe 99.8 7.1E-19 2.4E-23 200.3 19.8 193 342-549 40-232 (308)
102 3g39_A Variable lymphocyte rec 99.8 3.5E-19 1.2E-23 183.4 15.2 135 807-966 13-152 (170)
103 4ay9_X Follicle-stimulating ho 99.8 5E-19 1.7E-23 205.8 16.2 238 224-471 12-255 (350)
104 2r9u_A Variable lymphocyte rec 99.8 1.1E-18 3.7E-23 180.3 14.3 112 854-965 36-157 (174)
105 3m19_A Variable lymphocyte rec 99.8 6E-18 2E-22 186.8 20.4 178 222-404 15-192 (251)
106 4glp_A Monocyte differentiatio 99.8 6.2E-19 2.1E-23 201.4 12.8 177 392-570 92-285 (310)
107 4glp_A Monocyte differentiatio 99.8 7.6E-19 2.6E-23 200.6 12.9 199 368-570 92-307 (310)
108 2v9t_B SLIT homolog 2 protein 99.8 4.1E-18 1.4E-22 183.7 17.2 199 489-748 14-213 (220)
109 4fs7_A Uncharacterized protein 99.8 2.1E-17 7.1E-22 195.4 23.3 316 100-447 59-374 (394)
110 2ca6_A RAN GTPase-activating p 99.8 1.9E-19 6.5E-24 212.7 5.7 236 241-478 28-319 (386)
111 3cvr_A Invasion plasmid antige 99.8 4.5E-18 1.5E-22 207.6 16.5 214 440-702 60-290 (571)
112 2ca6_A RAN GTPase-activating p 99.7 4.7E-19 1.6E-23 209.2 6.5 185 340-524 91-317 (386)
113 2ast_B S-phase kinase-associat 99.7 1.7E-18 5.8E-23 200.4 11.0 218 345-567 49-282 (336)
114 4fdw_A Leucine rich hypothetic 99.7 6.8E-17 2.3E-21 189.8 24.3 265 108-400 109-379 (401)
115 2ast_B S-phase kinase-associat 99.7 1.3E-18 4.5E-23 201.4 9.2 80 247-330 49-131 (336)
116 4fs7_A Uncharacterized protein 99.7 3.8E-17 1.3E-21 193.2 21.6 336 178-562 58-393 (394)
117 4fdw_A Leucine rich hypothetic 99.7 8.4E-17 2.9E-21 189.0 22.8 263 164-447 110-378 (401)
118 3sb4_A Hypothetical leucine ri 99.7 6E-18 2.1E-22 194.8 11.0 102 460-563 224-327 (329)
119 3sb4_A Hypothetical leucine ri 99.7 1.1E-17 3.7E-22 192.8 11.0 285 244-541 24-328 (329)
120 2xot_A Amphoterin-induced prot 99.7 2.6E-17 8.8E-22 192.0 12.2 190 28-256 8-200 (361)
121 2o6s_A Variable lymphocyte rec 99.7 1.4E-16 4.7E-21 170.3 16.3 179 170-366 10-188 (208)
122 1h6t_A Internalin B; cell adhe 99.7 1.4E-16 4.9E-21 179.5 17.0 170 390-571 45-214 (291)
123 3cvr_A Invasion plasmid antige 99.7 4.3E-16 1.5E-20 190.2 19.3 188 270-486 60-254 (571)
124 1h6t_A Internalin B; cell adhe 99.7 3.5E-16 1.2E-20 176.4 17.2 173 365-550 44-216 (291)
125 2ifg_A High affinity nerve gro 99.7 1.3E-16 4.5E-21 185.3 13.1 116 851-968 31-148 (347)
126 4gt6_A Cell surface protein; l 99.7 8.7E-15 3E-19 172.9 26.9 338 100-473 51-389 (394)
127 3ozi_A L6TR; plant TIR domain, 99.7 8.6E-17 3E-21 163.0 8.2 97 1082-1181 33-132 (204)
128 2wfh_A SLIT homolog 2 protein 99.7 6.5E-16 2.2E-20 162.5 15.2 172 560-747 13-186 (193)
129 4gt6_A Cell surface protein; l 99.6 3.5E-15 1.2E-19 176.3 21.8 334 203-567 51-388 (394)
130 3h16_A TIR protein; bacteria T 99.6 4.7E-17 1.6E-21 163.1 3.8 101 1079-1182 15-116 (154)
131 2v70_A SLIT-2, SLIT homolog 2 99.6 2.3E-15 8E-20 162.0 16.3 153 170-331 14-167 (220)
132 1w8a_A SLIT protein; signaling 99.6 2.4E-15 8.1E-20 158.2 15.7 174 560-747 11-186 (192)
133 1m9s_A Internalin B; cell inva 99.6 9.8E-16 3.3E-20 189.3 14.5 169 343-524 43-211 (605)
134 1xeu_A Internalin C; cellular 99.6 5.6E-16 1.9E-20 171.8 9.7 170 463-667 20-189 (263)
135 3jrn_A AT1G72930 protein; TIR 99.6 2.4E-16 8.2E-21 157.6 6.0 97 1082-1181 6-104 (176)
136 1m9s_A Internalin B; cell inva 99.6 1.9E-15 6.5E-20 186.7 15.4 153 339-502 61-213 (605)
137 3e6j_A Variable lymphocyte rec 99.6 7.9E-15 2.7E-19 159.0 16.2 151 345-498 21-171 (229)
138 1xeu_A Internalin C; cellular 99.6 1.4E-15 4.8E-20 168.6 10.1 147 413-570 39-185 (263)
139 4ezg_A Putative uncharacterize 99.6 1E-14 3.5E-19 154.2 14.5 151 341-498 42-193 (197)
140 4ezg_A Putative uncharacterize 99.6 6.9E-15 2.4E-19 155.5 12.7 154 164-331 41-195 (197)
141 4h09_A Hypothetical leucine ri 99.5 6.7E-13 2.3E-17 156.0 26.4 301 107-447 41-341 (379)
142 4h09_A Hypothetical leucine ri 99.5 1.2E-12 4.1E-17 153.8 24.9 337 132-537 42-379 (379)
143 1dce_A Protein (RAB geranylger 99.5 7.2E-16 2.5E-20 189.4 -4.3 120 440-563 442-566 (567)
144 1dce_A Protein (RAB geranylger 99.5 1.4E-15 4.8E-20 186.9 -4.8 204 314-541 346-567 (567)
145 2ell_A Acidic leucine-rich nuc 99.5 5.8E-14 2E-18 144.2 7.8 134 798-934 19-160 (168)
146 2r9u_A Variable lymphocyte rec 99.4 3.7E-13 1.3E-17 138.7 13.1 117 766-889 3-119 (174)
147 1a9n_A U2A', U2A'; complex (nu 99.4 2.4E-13 8.3E-18 140.7 9.1 128 803-934 19-153 (176)
148 2ell_A Acidic leucine-rich nuc 99.4 6.4E-13 2.2E-17 136.4 11.5 129 392-522 25-159 (168)
149 4b8c_D Glucose-repressible alc 99.4 1.1E-13 3.7E-18 175.6 6.8 190 445-663 207-404 (727)
150 2o6r_A Variable lymphocyte rec 99.4 2.3E-12 7.9E-17 133.5 15.2 107 223-329 30-136 (177)
151 3rfe_A Platelet glycoprotein I 99.4 6.1E-13 2.1E-17 128.8 9.5 49 924-974 58-106 (130)
152 4b8c_D Glucose-repressible alc 99.4 1.7E-13 5.7E-18 173.9 6.3 154 358-520 215-369 (727)
153 3g39_A Variable lymphocyte rec 99.4 1.7E-12 5.8E-17 133.3 11.9 118 768-892 2-119 (170)
154 2je0_A Acidic leucine-rich nuc 99.4 1.5E-12 5.3E-17 130.5 10.9 126 391-518 17-148 (149)
155 2je0_A Acidic leucine-rich nuc 99.4 2.6E-12 8.9E-17 128.9 11.8 126 367-495 17-149 (149)
156 1a9n_A U2A', U2A'; complex (nu 99.3 3.8E-12 1.3E-16 131.6 11.2 131 365-498 17-152 (176)
157 1ds9_A Outer arm dynein; leuci 99.2 1.7E-13 5.7E-18 145.0 -6.3 114 410-527 43-157 (198)
158 1ds9_A Outer arm dynein; leuci 99.1 1.4E-12 4.8E-17 137.8 -3.6 130 804-939 24-158 (198)
159 2ifg_A High affinity nerve gro 99.1 1.5E-10 5.1E-15 134.0 10.3 113 584-705 13-129 (347)
160 3un9_A NLR family member X1; l 99.0 3.6E-11 1.2E-15 139.7 1.4 135 391-525 101-254 (372)
161 3un9_A NLR family member X1; l 99.0 6.1E-11 2.1E-15 137.8 2.4 109 368-476 127-253 (372)
162 2ra8_A Uncharacterized protein 98.5 3.9E-08 1.3E-12 113.0 4.6 112 433-547 166-292 (362)
163 3rfe_A Platelet glycoprotein I 98.5 1.8E-07 6.1E-12 90.3 7.6 102 608-745 12-115 (130)
164 2ra8_A Uncharacterized protein 98.5 2.1E-07 7.1E-12 107.0 8.2 82 438-521 251-341 (362)
165 1io0_A Tropomodulin; LRR prote 98.0 2.1E-06 7.2E-11 88.8 4.4 18 458-475 61-78 (185)
166 1io0_A Tropomodulin; LRR prote 98.0 3.4E-06 1.2E-10 87.2 5.4 88 436-523 62-164 (185)
167 3rw6_A Nuclear RNA export fact 97.8 1.4E-05 4.7E-10 86.9 5.4 65 848-913 167-234 (267)
168 3rw6_A Nuclear RNA export fact 97.8 3.2E-06 1.1E-10 91.9 -0.4 91 847-938 137-237 (267)
169 3e4g_A ATP synthase subunit S, 97.4 4E-05 1.4E-09 77.1 2.1 33 440-472 62-95 (176)
170 3e4g_A ATP synthase subunit S, 97.3 0.0001 3.4E-09 74.1 4.0 34 368-401 62-95 (176)
171 1eiw_A Hypothetical protein MT 97.0 0.00044 1.5E-08 63.3 4.5 102 1083-1217 3-104 (111)
172 1pgv_A TMD-1, tropomodulin TMD 96.6 0.0039 1.3E-07 63.8 8.0 40 437-476 68-112 (197)
173 1pgv_A TMD-1, tropomodulin TMD 96.4 0.0055 1.9E-07 62.7 7.8 58 415-472 70-136 (197)
174 2lz0_A Uncharacterized protein 93.0 0.13 4.5E-06 46.2 5.7 48 812-860 5-52 (100)
175 2lz0_A Uncharacterized protein 92.6 0.13 4.6E-06 46.2 5.3 50 836-886 5-54 (100)
176 3hyn_A Putative signal transdu 91.3 0.55 1.9E-05 46.1 8.1 84 1092-1181 27-118 (189)
177 2f62_A Nucleoside 2-deoxyribos 49.6 83 0.0028 30.5 9.9 72 1091-1166 20-96 (161)
178 1byr_A Protein (endonuclease); 36.3 48 0.0016 31.6 6.0 52 1124-1180 10-61 (155)
179 3ehd_A Uncharacterized conserv 34.8 1.3E+02 0.0043 29.2 8.5 86 1091-1183 14-107 (162)
No 1
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.2e-89 Score=895.80 Aligned_cols=786 Identities=22% Similarity=0.336 Sum_probs=451.2
Q ss_pred EEEccCCCCccCCcccCCCCCCCcEEECCCCCCCCCCccccCCCCcccCCCcccEEEcCCC-CCCccCcccCCCCCCCCE
Q psy5670 171 SLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNN-SFDSLPAEGFSRLSRLQE 249 (1269)
Q Consensus 171 ~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~ 249 (1269)
..+.++++++.+|. ..++|++|+|++|.++.+.+..|.. +++|++|+|++| .+..+++.+|+++++|++
T Consensus 8 ~~dcs~~~L~~vP~----lp~~l~~LdLs~N~i~~i~~~~~~~------l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~ 77 (844)
T 3j0a_A 8 IAFYRFCNLTQVPQ----VLNTTERLLLSFNYIRTVTASSFPF------LEQLQLLELGSQYTPLTIDKEAFRNLPNLRI 77 (844)
T ss_dssp EEEESCCCSSCCCS----SCTTCCEEEEESCCCCEECSSSCSS------CCSCSEEEECTTCCCCEECTTTTSSCTTCCE
T ss_pred EEEccCCCCCCCCC----CCCCcCEEECCCCcCCccChhHCcc------cccCeEEeCCCCCCccccCHHHhcCCCCCCE
Confidence 45556666666664 2356666666666666555544433 456666666666 333444555666666666
Q ss_pred EEccCCCCcccchhhhcCCCCCcEEEccCCCCCC--CCcccccCCCCCcEEEeeCCcccccCc-ccccCCCCCCEEECcC
Q psy5670 250 LYLQGNILTFLADHALDGLNSLTVLNLSVNNLVN--IPPELFNQSRDLKEVYLQNNSINVLAP-GIFNVLTQLIVLDLSN 326 (1269)
Q Consensus 250 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--l~~~~f~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~ 326 (1269)
|+|++|.+..+.+.+|.++++|++|+|++|.+++ .....|..+++|++|+|++|.++++.+ ..|+++++|++|++++
T Consensus 78 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~ 157 (844)
T 3j0a_A 78 LDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSS 157 (844)
T ss_dssp EECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEES
T ss_pred EECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCC
Confidence 6666666666656666666666666666666554 222235556666666666666555433 3455556666666655
Q ss_pred CCCCccccCcccccCC--CCccEEEcCCCCCcccCchhhcCCCCCcEEEccCCcccccccccccCCCCCcEEEccCCccc
Q psy5670 327 NELTEEWVNAATFSGL--HRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLK 404 (1269)
Q Consensus 327 n~l~~~~~~~~~~~~l--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~ 404 (1269)
|.+.+ ..+..+..+ ++|+.|+++.|.+.+..+..+..+++ .|.. ..|+.|++++|.+.
T Consensus 158 N~i~~--~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~-----------------~~~~-~~L~~L~Ls~n~l~ 217 (844)
T 3j0a_A 158 NQIFL--VCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMN-----------------PFRN-MVLEILDVSGNGWT 217 (844)
T ss_dssp SCCCC--CCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSC-----------------TTTT-CCBSEEBCSSCCSS
T ss_pred CcCCe--eCHHHcccccCCccceEECCCCccccccccchhhcCC-----------------cccc-CceeEEecCCCcCc
Confidence 55544 223334333 45555555555554433333332222 0000 01444444444333
Q ss_pred ccCcccccC---CCCCCEEEccC---------CCCCccChhhhcCC--CCCcEEEccCCCCCCch-hhhcCCCCCcEEEC
Q psy5670 405 RIESNSLDS---LTALSVLSLDN---------NELEYIEENALKNS--TSLQDFHLNGNKLTEIP-KVLRNLHSLKTLDL 469 (1269)
Q Consensus 405 ~~~~~~~~~---l~~L~~L~Ls~---------n~i~~~~~~~~~~l--~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~L 469 (1269)
+..+..+.. ...++.|.++. +.+.......|.++ ++|+.|++++|.+..++ ..+..+++|++|++
T Consensus 218 ~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 297 (844)
T 3j0a_A 218 VDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNL 297 (844)
T ss_dssp TTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEE
T ss_pred hhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEEC
Confidence 322222211 12333444332 22222222333332 34555555555444332 23444455555555
Q ss_pred CCCCCCccChhhhhccccCCeeeccCCcCCCCChhhhcCCCCCCEEEcCCCccccccccccCCCCCccEEEccccccccc
Q psy5670 470 GDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDI 549 (1269)
Q Consensus 470 s~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~l 549 (1269)
++|.++++.+..|.++++|+.|+|++|.++.+.+..|.++++|+.|++++|++..+.+..|.++++|+.|++++|.++.+
T Consensus 298 ~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i 377 (844)
T 3j0a_A 298 AYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI 377 (844)
T ss_dssp ESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC
T ss_pred CCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc
Confidence 55555544444444445555555555555444444444455555555555555444444444444455555544444433
Q ss_pred CCcCCCCCCCcEEEccCCcCccccccccCCCccEEECCCCCcccccccccccccccccEEEcCCCccccccCCcccCCcc
Q psy5670 550 GGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPHSVE 629 (1269)
Q Consensus 550 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~lp~~L~~L~Ls~n~l~~~~~~~~l~~~~~L~~LdLs~N~l~~~~~~~~~~~L~ 629 (1269)
+. ++ +|+.|++++|+++.++.. ..+++.|++++|+++++...
T Consensus 378 ~~----~~----------------------~L~~L~l~~N~l~~l~~~-----~~~l~~L~ls~N~l~~l~~~------- 419 (844)
T 3j0a_A 378 HF----IP----------------------SIPDIFLSGNKLVTLPKI-----NLTANLIHLSENRLENLDIL------- 419 (844)
T ss_dssp SS----CC----------------------SCSEEEEESCCCCCCCCC-----CTTCCEEECCSCCCCSSTTH-------
T ss_pred cC----CC----------------------CcchhccCCCCccccccc-----ccccceeecccCccccCchh-------
Confidence 22 33 455555555555544431 23566777777776654321
Q ss_pred EEEccCcccccccCCccCCCCCccEEEcCCCCcccccccccccccCCCCCCCCceEecCCccccccCChhHHhhcccccc
Q psy5670 630 NLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHKNIPDFYIGENPFQCDCNMQWLQSYSVNKER 709 (1269)
Q Consensus 630 ~L~Ls~N~i~~~~~~~f~~~~~L~~LdLs~N~l~~l~~~~~~~~~~~~~~~l~~l~l~~Np~~c~c~~~~l~~~~~~~~~ 709 (1269)
..+..+++|+.|+|++|++++++.... ....
T Consensus 420 --------------~~~~~l~~L~~L~Ls~N~l~~~~~~~~----~~~~------------------------------- 450 (844)
T 3j0a_A 420 --------------YFLLRVPHLQILILNQNRFSSCSGDQT----PSEN------------------------------- 450 (844)
T ss_dssp --------------HHHTTCTTCCEEEEESCCCCCCCSSSS----SCSC-------------------------------
T ss_pred --------------hhhhcCCccceeeCCCCcccccccccc----cccC-------------------------------
Confidence 112345566666666665554321100 0000
Q ss_pred CCCcccccCccccccccccCCCcccccccCCCccccccccCcccccccccCCCCcccCCCCCCceecCCCCCcceeeecC
Q psy5670 710 NKPNLVDLDTVTCKLLYNRANPAILLKEAHSNQFLCEYETNCAPLCHCCDFDACDCEMTCPNNCTCYHDVSWEANVIDCS 789 (1269)
Q Consensus 710 ~~~~~~~l~~~~c~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cp~~C~c~~~~~~~~~~v~c~ 789 (1269)
T Consensus 451 -------------------------------------------------------------------------------- 450 (844)
T 3j0a_A 451 -------------------------------------------------------------------------------- 450 (844)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccccCCCCCCCCCcEEEecCCCCCCcCCCcCCCCCCccEEEccCcCccccccccccCCCCCCEEeCCCCCCcccCcc
Q psy5670 790 TGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGY 869 (1269)
Q Consensus 790 ~~~l~~~~p~~~p~~~~~l~l~~n~i~~l~~~~f~~~~~L~~L~l~~n~i~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~ 869 (1269)
.+++.|++++|.++.+... .+.+..|.++++|+.|+|++|+|+.+++.
T Consensus 451 -------------~~L~~L~Ls~N~l~~~~~~-------------------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 498 (844)
T 3j0a_A 451 -------------PSLEQLFLGENMLQLAWET-------------------ELCWDVFEGLSHLQVLYLNHNYLNSLPPG 498 (844)
T ss_dssp -------------TTCCBCEEESCCCSSSCCS-------------------CCCSSCSSCBCCEECCCCCHHHHTTCCTT
T ss_pred -------------CccccccCCCCcccccccc-------------------ccchhhhcCcccccEEECCCCcccccChh
Confidence 1122333333333322211 11123455566666777777777777777
Q ss_pred cccCCcccCeeecccccCcccChhhhhcCcccceEeccCccceeeecc-cccCCccEEEeeCCcccccCCcHHHHHHHHH
Q psy5670 870 EFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVW-HLSSQIQSITLTSNPWSCDCDFTEKFRDYLQ 948 (1269)
Q Consensus 870 ~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~-~~~~~l~~l~l~~Np~~C~C~~~~~~~~w~~ 948 (1269)
+|.++++|++|+|++|+|+++++..|. ++|+.|+|++|+|+++++. + .+++.+++++|||.|+|++ .||..|++
T Consensus 499 ~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~--~~L~~l~l~~Np~~C~c~~-~~f~~~~~ 573 (844)
T 3j0a_A 499 VFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF--VSLSVLDITHNKFICECEL-STFINWLN 573 (844)
T ss_dssp SSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC--SSCCEEEEEEECCCCSSSC-CSHHHHHH
T ss_pred HccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHh--CCcCEEEecCCCccccccc-HHHHHHHH
Confidence 777777777777777777777776664 6777777777777777776 4 4688999999999999997 69999998
Q ss_pred hccCCcCc-cCcceeccCCccceeeeeeecCCccccccccccCCCCCCCccccccceeeecCCCCCCCcceeeccCCCcc
Q psy5670 949 RSRSSVHD-ISQIRCMTGSEVGFTIMRTVIPSCNVVSTNVSSHSNNNNNTTTTTTTTTIFIPEHSPMNGSFILSELQPQQ 1027 (1269)
Q Consensus 949 ~~~~~i~~-~~~~~C~~p~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1027 (1269)
.....+.+ ..++.|.+|+...+. ++.++....|. .. ... ...
T Consensus 574 ~~~~~~~~~~~~~~C~~p~~~~g~---------~l~~~~~~~C~----~~------~~~------------------~~~ 616 (844)
T 3j0a_A 574 HTNVTIAGPPADIYCVYPDSFSGV---------SLFSLSTEGCD----EE------EVL------------------KSL 616 (844)
T ss_dssp HTTTTTCCCGGGCCCSSCSSSCSC---------CTTTCCCCCC-------------------------------------
T ss_pred hcCcccccccccCccCCchhhCCC---------ccccCccccCC----ch------hhc------------------ccc
Confidence 76655543 467899999887541 23334445665 10 000 000
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccccccCCCCceeEEEEcccCCHHHHHHHHHHhh
Q psy5670 1028 DYVFLLIILVSASFVLVLLLILIIIYRQEMRVWFHSRFGVRLFYKSSEIEMDDRDKLFDAFVSYSSKDEAFVAEELAPIL 1107 (1269)
Q Consensus 1028 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDafvsy~~~d~~~v~~~l~~~L 1107 (1269)
.+. ++++++++++++++++++++.|+....+||+.. ..++.....+ ++.+++++|||||||+++|++||.++|+|.|
T Consensus 617 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~~~~~-~~~~~~~~yd~fisy~~~d~~~v~~~l~~~L 693 (844)
T 3j0a_A 617 KFS-LFIVCTVTLTLFLMTILTVTKFRGFCFICYKTA-QRLVFKDHPQ-GTEPDMYKYDAYLCFSSKDFTWVQNALLKHL 693 (844)
T ss_dssp -CH-HHHHHHHHHHHHHHTTTSHHHHC-----------------CCCG-GGSSSCCCCSEEEECCSTTHHHHHHTHHHHH
T ss_pred cee-hhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHH-HHHHhccccc-cccccceeccEEEEeeCCcHHHHHHHHHHHH
Confidence 111 111222222222222233344443334455433 2233322222 4556789999999999999999999999999
Q ss_pred hcC---CCCceEEEecccCCCCCchhHHHHHHHHhcceEEEEecccchhhhhhHHHHHHHHHHHhcCC-CeEEEEEeCCC
Q psy5670 1108 ENG---DPAYKLCLHYREFPVGGYIGDTIVQAVESSRRTIMVLSENFIKSEWCRYEFKSAHHQVLRGK-KRLIVILLGEV 1183 (1269)
Q Consensus 1108 e~~---~~~~~l~~~~rd~~~G~~~~~~i~~~i~~Sr~~i~vlS~~~~~s~w~~~e~~~a~~~~~~~~-~~~i~i~~~~~ 1183 (1269)
|++ ++|||+|+++|||.||+.++++|.++|++|||+|+|+|++|++|+||++|++.|++++++++ +++|+|+++++
T Consensus 694 e~~~~~~~~~~~~~~~rd~~~G~~~~~~i~~~i~~sr~~i~vls~~~~~s~wc~~e~~~a~~~~~~~~~~~~i~i~~~~~ 773 (844)
T 3j0a_A 694 DTQYSDQNRFNLCFEERDFVPGENRIANIQDAIWNSRKIVCLVSRHFLRDGWCLEAFSYAQGRCLSDLNSALIMVVVGSL 773 (844)
T ss_dssp HSTTTTTTCSCEECSSSSCCSSSCHHHHHHHHHHHSSEEEEEECTTHHHHTSTTHHHHHHHSCCCCSSCTTEEEEESSCC
T ss_pred hhccccCCceEEEEEccccCCCchHHHHHHHHHHHhCeEEEEeccccccChHHHHHHHHHHHHHHHhcCCcEEEEEeccC
Confidence 983 68999999999999999999999999999999999999999999999999999999999888 99999999999
Q ss_pred CCCCCC--HHHHHHHhcCceEEcCC-----cchHHHHHHhCCCCCCCCCCCCCCC
Q psy5670 1184 PQKDLD--PDIRLYLKSNTYLQWGD-----KLFWEKLKFALPDVPNNQRNNNNRN 1231 (1269)
Q Consensus 1184 ~~~~~~--~~l~~~l~~~~~l~w~~-----~~Fw~~l~~~l~~~~~~~~~~~~~~ 1231 (1269)
++++++ ++||+++++++||+|++ ++||++||||||.+.+.+ +..+++
T Consensus 774 ~~~~~~~~~~l~~~~~~~~~l~w~~~~~~~~~Fw~~l~~al~~~~~~~-~~~~~~ 827 (844)
T 3j0a_A 774 SQYQLMKHQSIRGFVQKQQYLRWPEDFQDVGWFLHKLSQQILKKEKEK-KKDNNI 827 (844)
T ss_dssp CSSSCCSCSSTTHHHHTTCCCCCCSSSTTTTHHHHHHTTTTTSCCCCS-CC----
T ss_pred ChHHhhhhHHHHHHHhhCCeeeCCCCchhHHHHHHHHHHHhccccccc-cCCCCc
Confidence 998873 58999999999999976 589999999999765543 344444
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=4.9e-61 Score=619.81 Aligned_cols=715 Identities=21% Similarity=0.222 Sum_probs=487.2
Q ss_pred hhhHHHHHHHhhhhhhhccccCCCCCCCcccccccCCcccccCCCCCCCCceEEEEeeecccCcccCCccccccccceeE
Q psy5670 9 FITVLISALGLVSASISKALRYQAPDECKWFAVTSEGAEIEVPSAAEPDQEVALVCKLRTINSEIENTNFSIIQAQYTVR 88 (1269)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~cp~~C~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~i~~~~~~~~~s~~~~~~~~~ 88 (1269)
-..+|+.|...+......++|....+||.|.||+|+ ..+|+.
T Consensus 13 ~~~all~~k~~~~~~~~l~~W~~~~~~C~w~gv~C~--------------------------------------~~~v~~ 54 (768)
T 3rgz_A 13 EIHQLISFKDVLPDKNLLPDWSSNKNPCTFDGVTCR--------------------------------------DDKVTS 54 (768)
T ss_dssp HHHHHHHHHTTCSCTTSSTTCCTTSCGGGSTTEEEE--------------------------------------TTEEEE
T ss_pred HHHHHHHHHhhCCCcccccCCCCCCCCcCCcceEEC--------------------------------------CCcEEE
Confidence 456778877644333234556677889999987552 124567
Q ss_pred EEEEeCCceeeccC---CCchhccCCcccceeEeccccCCCCChhhccCCccCceeecccccCCCCccceeccch--hhh
Q psy5670 89 LRIECGDMLFFQSS---LSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHN--VFT 163 (1269)
Q Consensus 89 L~L~~~~~~~~~~~---i~~~~f~~l~~L~~L~L~~~~i~~i~~~~f~~l~~L~~L~L~~~~~~~~~~~~~i~~~--~f~ 163 (1269)
|+|+++.+ .+. ++ .+|.++++|+.++++.+.+..++. .|.++++|++|+|+++... ..+ +. .+
T Consensus 55 L~L~~~~l---~g~~~~l~-~~l~~L~~L~~l~~~~~~~~~l~~-~~~~l~~L~~L~Ls~n~l~-----~~~-~~~~~l- 122 (768)
T 3rgz_A 55 IDLSSKPL---NVGFSAVS-SSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLSRNSLS-----GPV-TTLTSL- 122 (768)
T ss_dssp EECTTSCC---CEEHHHHH-HHTTTCTTCCEEECTTSCEEECCC-CCCCCTTCCEEECCSSEEE-----EEG-GGGGGG-
T ss_pred EECCCCCc---CCccCccC-hhHhccCcccccCCcCCCcCCCch-hhccCCCCCEEECCCCcCC-----CcC-CChHHH-
Confidence 77776653 222 44 478888888888888887765543 6888899999999765431 112 33 56
Q ss_pred hcCCCCCEEEccCCCCcc-CCcccCCCCCCCcEEECCCCCCCCCCccccCCCCcccCCCcccEEEcCCCCCCccCcccCC
Q psy5670 164 DELQSLESLDLSMNSIWT-LPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFS 242 (1269)
Q Consensus 164 ~~l~~L~~L~Ls~n~l~~-l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 242 (1269)
+++++|++|+|++|.+.. +|...+.++++|++|+|++|++++..+..+.. ...+++|++|++++|.++...+ +.
T Consensus 123 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~---~~~l~~L~~L~Ls~n~l~~~~~--~~ 197 (768)
T 3rgz_A 123 GSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVL---SDGCGELKHLAISGNKISGDVD--VS 197 (768)
T ss_dssp GGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHH---TTCCTTCCEEECCSSEEESCCB--CT
T ss_pred hCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhh---hccCCCCCEEECCCCcccccCC--cc
Confidence 888999999999888774 34444478888889998888887766544211 1236788888888888876654 47
Q ss_pred CCCCCCEEEccCCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCCcccccCcccccCCCCCCEE
Q psy5670 243 RLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVL 322 (1269)
Q Consensus 243 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 322 (1269)
++++|++|++++|.+.+..+. ++++++|++|++++|.+++..+..|..+++|++|++++|.+.+..+.. .+++|++|
T Consensus 198 ~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L 274 (768)
T 3rgz_A 198 RCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYL 274 (768)
T ss_dssp TCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEE
T ss_pred cCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEE
Confidence 788888888888888876665 888888888888888888766677788888888888888887765543 77888888
Q ss_pred ECcCCCCCccccCcccccC-CCCccEEEcCCCCCcccCchhhcCCCCCcEEEccCCccc-ccccccccCCCCCcEEEccC
Q psy5670 323 DLSNNELTEEWVNAATFSG-LHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIE-SIHRNTFASLSNLHTLIMSN 400 (1269)
Q Consensus 323 ~L~~n~l~~~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~i~~~~f~~l~~L~~L~Ls~ 400 (1269)
++++|.+.+. + +..+.+ +++|++|++++|.+.+..+..|+.+++|++|++++|.+. .++...|..+++|+.|++++
T Consensus 275 ~L~~n~l~~~-i-p~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~ 352 (768)
T 3rgz_A 275 SLAENKFTGE-I-PDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSF 352 (768)
T ss_dssp ECCSSEEEES-C-CCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCS
T ss_pred ECcCCccCCc-c-CHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcC
Confidence 8888887652 2 344444 488888888888888777777888888888888888876 56655577888888888888
Q ss_pred CcccccCcccccCCC-CCCEEEccCCCCCccChhhhcC--CCCCcEEEccCCCCC-CchhhhcCCCCCcEEECCCCCCCc
Q psy5670 401 NKLKRIESNSLDSLT-ALSVLSLDNNELEYIEENALKN--STSLQDFHLNGNKLT-EIPKVLRNLHSLKTLDLGDNLITE 476 (1269)
Q Consensus 401 n~l~~~~~~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~--l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~Ls~n~i~~ 476 (1269)
|++++..+..+..++ +|+.|++++|.+.+..+..+.. +++|++|++++|.++ .+|..+..+++|++|++++|.+++
T Consensus 353 n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 432 (768)
T 3rgz_A 353 NEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG 432 (768)
T ss_dssp SEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEES
T ss_pred CccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccC
Confidence 888777777777766 7888888888777655555554 667777777777776 566677777777777777777777
Q ss_pred cChhhhhccccCCeeeccCCcCCCCChhhhcCCCCCCEEEcCCCccccccccccCCCCCccEEEccccccc-ccCCcCCC
Q psy5670 477 INNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLT-DIGGLFPK 555 (1269)
Q Consensus 477 ~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~-~l~~~~~~ 555 (1269)
..+..+..+++|+.|++++|.+....+..|..+++|++|++++|++++..+..+..+++|+.|++++|+++ .+|..+..
T Consensus 433 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~ 512 (768)
T 3rgz_A 433 TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR 512 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG
T ss_pred cccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhc
Confidence 77777777777777777777775444445677777777777777777776777777777777777777776 45556666
Q ss_pred CCCCcEEEccCCcCccccccccCCCccEEECCCCCcccccccccccccccccEEEcCCCccccccCCcccCCccEEEccC
Q psy5670 556 LPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPHSVENLFLTN 635 (1269)
Q Consensus 556 l~~L~~L~Ls~n~l~~~~~~~lp~~L~~L~Ls~n~l~~~~~~~~l~~~~~L~~LdLs~N~l~~~~~~~~~~~L~~L~Ls~ 635 (1269)
+++|+.|++++|++.. .+|. .+..+++|+.|++++|++++..
T Consensus 513 l~~L~~L~L~~N~l~~----~~p~-------------------~l~~l~~L~~L~Ls~N~l~g~i--------------- 554 (768)
T 3rgz_A 513 LENLAILKLSNNSFSG----NIPA-------------------ELGDCRSLIWLDLNTNLFNGTI--------------- 554 (768)
T ss_dssp CTTCCEEECCSSCCEE----ECCG-------------------GGGGCTTCCEEECCSSEEESBC---------------
T ss_pred CCCCCEEECCCCcccC----cCCH-------------------HHcCCCCCCEEECCCCccCCcC---------------
Confidence 6666666666665541 1111 1233445555555555555433
Q ss_pred cccccccCCccCCCCCccEEEcCC-CCcccccccccccccCCCCCCCCceEecCCccccccCChhHHhhccccccCCCcc
Q psy5670 636 NLISKVQPYTFFMKPNLTRVDLVG-NRLKNINQTALRISPLPSHKNIPDFYIGENPFQCDCNMQWLQSYSVNKERNKPNL 714 (1269)
Q Consensus 636 N~i~~~~~~~f~~~~~L~~LdLs~-N~l~~l~~~~~~~~~~~~~~~l~~l~l~~Np~~c~c~~~~l~~~~~~~~~~~~~~ 714 (1269)
|..+.....+..+++.. +++..+..... ..........+. +
T Consensus 555 -------p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~--------------------------~ 596 (768)
T 3rgz_A 555 -------PAAMFKQSGKIAANFIAGKRYVYIKNDGM-----KKECHGAGNLLE--------------------------F 596 (768)
T ss_dssp -------CGGGGTTTTCBCCSTTCSCEEEEEECCSC-----CTTCCSSEEEEE--------------------------C
T ss_pred -------ChHHhcccchhhhhccccccccccccccc-----cccccccccccc--------------------------c
Confidence 33322222222222211 11111111000 010000000000 0
Q ss_pred cccCccccccccccCCCcccccccCCCccccccccCcccccccccCCCCcccCCCCCCceecCCCCCcceeeecCCCCcc
Q psy5670 715 VDLDTVTCKLLYNRANPAILLKEAHSNQFLCEYETNCAPLCHCCDFDACDCEMTCPNNCTCYHDVSWEANVIDCSTGGYD 794 (1269)
Q Consensus 715 ~~l~~~~c~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cp~~C~c~~~~~~~~~~v~c~~~~l~ 794 (1269)
..... ..+..+..
T Consensus 597 ~~~~~-------------~~~~~l~~------------------------------------------------------ 609 (768)
T 3rgz_A 597 QGIRS-------------EQLNRLST------------------------------------------------------ 609 (768)
T ss_dssp TTCCG-------------GGGGGGGG------------------------------------------------------
T ss_pred ccccc-------------hhhhcccc------------------------------------------------------
Confidence 00000 00000000
Q ss_pred ccCCCCCCCCCcEEEecCCCCCCcCCCcCCCCCCccEEEccCcCccccccccccCCCCCCEEeCCCCCCcccCcccccCC
Q psy5670 795 NQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERL 874 (1269)
Q Consensus 795 ~~~p~~~p~~~~~l~l~~n~i~~l~~~~f~~~~~L~~L~l~~n~i~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l 874 (1269)
...+++..|.+....+..|.++++|+.|+|++|+++...|..|..+++|+.|+|++|++++..|..|.++
T Consensus 610 ----------~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L 679 (768)
T 3rgz_A 610 ----------RNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDL 679 (768)
T ss_dssp ----------TCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC
T ss_pred ----------ccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCC
Confidence 0001111222222233456778899999999999999889999999999999999999999888999999
Q ss_pred cccCeeecccccCcccChhhhhcCcccceEeccCccceeeecc-cccCCccEEEeeCCccccc
Q psy5670 875 ENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVW-HLSSQIQSITLTSNPWSCD 936 (1269)
Q Consensus 875 ~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~-~~~~~l~~l~l~~Np~~C~ 936 (1269)
++|++|+|++|++++..|..|..+++|++|+|++|+|++..|. ....++....+.|||.-|.
T Consensus 680 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg 742 (768)
T 3rgz_A 680 RGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCG 742 (768)
T ss_dssp TTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEES
T ss_pred CCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcC
Confidence 9999999999999999999999999999999999999987776 3445555667889999886
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=5.3e-60 Score=605.20 Aligned_cols=619 Identities=25% Similarity=0.340 Sum_probs=375.2
Q ss_pred CEEEccCCCCccCCcccCCCCCCCcEEECCCCCCCCCCccccCCCCcccCCCcccEEEcCCCCCCccCcccCCCCCCCCE
Q psy5670 170 ESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQE 249 (1269)
Q Consensus 170 ~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 249 (1269)
+.++.+++.++.+|... . +++++|+|++|+++++++..|.. +++|++|+|++|.++.+++..|+++++|++
T Consensus 7 ~~~~cs~~~L~~ip~~~-~--~~l~~L~Ls~n~l~~~~~~~~~~------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 77 (680)
T 1ziw_A 7 EVADCSHLKLTQVPDDL-P--TNITVLNLTHNQLRRLPAANFTR------YSQLTSLDVGFNTISKLEPELCQKLPMLKV 77 (680)
T ss_dssp SEEECCSSCCSSCCSCS-C--TTCSEEECCSSCCCCCCGGGGGG------GTTCSEEECCSSCCCCCCTTHHHHCTTCCE
T ss_pred CeeECCCCCcccccccc-C--CCCcEEECCCCCCCCcCHHHHhC------CCcCcEEECCCCccCccCHHHHhcccCcCE
Confidence 45666766676666543 1 56666666666666655544433 355666666666666665555666666666
Q ss_pred EEccCCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCCcccccCcccccCCCCCCEEECcCCCC
Q psy5670 250 LYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNEL 329 (1269)
Q Consensus 250 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 329 (1269)
|++++|.++.+++.+|+++++|++|++++|+++.+++..|..+++|++|++++|.+++..+..+.++++|++|++++|.+
T Consensus 78 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 157 (680)
T 1ziw_A 78 LNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKI 157 (680)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCC
T ss_pred EECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcc
Confidence 66666666665555566666666666666666666555556666666666666666555555555556666666665555
Q ss_pred CccccCcccc--cCCCCccEEEcCCCCCcccCchhhcCCCCCcEEEccCCcccccccccc---cCCCCCcEEEccCCccc
Q psy5670 330 TEEWVNAATF--SGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTF---ASLSNLHTLIMSNNKLK 404 (1269)
Q Consensus 330 ~~~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f---~~l~~L~~L~Ls~n~l~ 404 (1269)
++ +.+..+ ..+++|+.|++++|.+.++.+..+..+++|+.|+++++.+.......+ ...++|+.|++++|.+.
T Consensus 158 ~~--~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~ 235 (680)
T 1ziw_A 158 QA--LKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLS 235 (680)
T ss_dssp CC--BCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCC
T ss_pred cc--cCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCccc
Confidence 44 222222 233555555555555555555555555555555555544431111000 01234444445444444
Q ss_pred ccCcccccCCCC--CCEEEccCCCCCccChhhhcCCCCCcEEEccCCCCCCchhhhcCCCCCcEEECCCCCCCccChhhh
Q psy5670 405 RIESNSLDSLTA--LSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSL 482 (1269)
Q Consensus 405 ~~~~~~~~~l~~--L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~ 482 (1269)
+..+..+.+++. |+.|++++|.+.++.+..|..+++|++|++++| .++++.+..|
T Consensus 236 ~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-----------------------~l~~~~~~~~ 292 (680)
T 1ziw_A 236 TTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYN-----------------------NIQHLFSHSL 292 (680)
T ss_dssp EECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSC-----------------------CBSEECTTTT
T ss_pred ccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCC-----------------------ccCccChhhh
Confidence 444444444332 444444444444444444444444444444444 4444444444
Q ss_pred hccccCCeeeccCCcCC---------CCChhhhcCCCCCCEEEcCCCccccccccccCCCCCccEEEccccccc--ccC-
Q psy5670 483 NSLHQLAGLRLTENNIS---------NISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLT--DIG- 550 (1269)
Q Consensus 483 ~~l~~L~~L~Ls~n~l~---------~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~--~l~- 550 (1269)
.++++|+.|++++|... .+....|..+++|++|++++|++.++.+..|.++++|+.|++++|.+. .++
T Consensus 293 ~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~ 372 (680)
T 1ziw_A 293 HGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTN 372 (680)
T ss_dssp TTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECT
T ss_pred cCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcch
Confidence 44444444444433221 222223555556666666666655555555555555555555555432 221
Q ss_pred CcCCCCCCCcEEEccCCcCccccccccCCCccEEECCCCCcccccccccccccccccEEEcCCCccccc-cCCccc--CC
Q psy5670 551 GLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTEL-TGNAIP--HS 627 (1269)
Q Consensus 551 ~~~~~l~~L~~L~Ls~n~l~~~~~~~lp~~L~~L~Ls~n~l~~~~~~~~l~~~~~L~~LdLs~N~l~~~-~~~~~~--~~ 627 (1269)
..|..+ ...+|+.|++++|+++.+.+ ..+..+++|+.|++++|++++. +...+. ++
T Consensus 373 ~~f~~~--------------------~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~ 431 (680)
T 1ziw_A 373 ETFVSL--------------------AHSPLHILNLTKNKISKIES-DAFSWLGHLEVLDLGLNEIGQELTGQEWRGLEN 431 (680)
T ss_dssp TTTGGG--------------------TTSCCCEEECTTSCCCEECT-TTTTTCTTCCEEECCSSCCEEECCSGGGTTCTT
T ss_pred hhhccc--------------------ccCcCceEECCCCCCCeECh-hhhhCCCCCCEEeCCCCcCccccCcccccCccc
Confidence 111111 01245555555555554433 1234566777888888877653 222332 47
Q ss_pred ccEEEccCcccccccCCccCCCCCccEEEcCCCCcccccccccccccCCCCCCCCceEecCCccccccCChhHHhhcccc
Q psy5670 628 VENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHKNIPDFYIGENPFQCDCNMQWLQSYSVNK 707 (1269)
Q Consensus 628 L~~L~Ls~N~i~~~~~~~f~~~~~L~~LdLs~N~l~~l~~~~~~~~~~~~~~~l~~l~l~~Np~~c~c~~~~l~~~~~~~ 707 (1269)
|++|++++|+++++.+..|..+++|+.|++++|.++.+... |.
T Consensus 432 L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-------p~------------------------------ 474 (680)
T 1ziw_A 432 IFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSS-------PS------------------------------ 474 (680)
T ss_dssp CCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCS-------SC------------------------------
T ss_pred ccEEecCCCCcceeChhhhhcCcccccchhccccccccccC-------Cc------------------------------
Confidence 88888888888888888899999999999999887642110 00
Q ss_pred ccCCCcccccCccccccccccCCCcccccccCCCccccccccCcccccccccCCCCcccCCCCCCceecCCCCCcceeee
Q psy5670 708 ERNKPNLVDLDTVTCKLLYNRANPAILLKEAHSNQFLCEYETNCAPLCHCCDFDACDCEMTCPNNCTCYHDVSWEANVID 787 (1269)
Q Consensus 708 ~~~~~~~~~l~~~~c~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cp~~C~c~~~~~~~~~~v~ 787 (1269)
T Consensus 475 -------------------------------------------------------------------------------- 474 (680)
T 1ziw_A 475 -------------------------------------------------------------------------------- 474 (680)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCccccCCCCCCCCCcEEEecCCCCCCcCCCcCCCCCCccEEEccCcCccccccc--------cccCCCCCCEEeCC
Q psy5670 788 CSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNK--------TFNGLKELIILRLD 859 (1269)
Q Consensus 788 c~~~~l~~~~p~~~p~~~~~l~l~~n~i~~l~~~~f~~~~~L~~L~l~~n~i~~i~~~--------~f~~l~~L~~L~L~ 859 (1269)
.+.. ..+++.|++++|+|+.+++..|.++++|++|++++|+++.+... .|.++++|+.|+|+
T Consensus 475 ----~~~~------l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~ 544 (680)
T 1ziw_A 475 ----PFQP------LRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLE 544 (680)
T ss_dssp ----TTTT------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECC
T ss_pred ----cccc------CCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECC
Confidence 0000 02357899999999999999999999999999999999988544 37899999999999
Q ss_pred CCCCcccCcccccCCcccCeeecccccCcccChhhhhcCcccceEeccCccceeeecc-c--ccCCccEEEeeCCccccc
Q psy5670 860 DNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVW-H--LSSQIQSITLTSNPWSCD 936 (1269)
Q Consensus 860 ~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~-~--~~~~l~~l~l~~Np~~C~ 936 (1269)
+|+++.+++.+|.++++|++|+|++|+|+.+++..|.++++|+.|+|++|+|+++++. + .+++|+.+++++|||.||
T Consensus 545 ~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~ 624 (680)
T 1ziw_A 545 SNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCT 624 (680)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBC
T ss_pred CCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccC
Confidence 9999999999999999999999999999999999999999999999999999999998 6 578999999999999999
Q ss_pred CCcHHHHHHHHHhccCCcCcc-CcceeccCCccce
Q psy5670 937 CDFTEKFRDYLQRSRSSVHDI-SQIRCMTGSEVGF 970 (1269)
Q Consensus 937 C~~~~~~~~w~~~~~~~i~~~-~~~~C~~p~~~~~ 970 (1269)
|+...||++|++.....+.+. .+++|..|+..+|
T Consensus 625 c~~~~~~~~~~~~~~~~~~~~~~~~~C~~p~~~~g 659 (680)
T 1ziw_A 625 CESIAWFVNWINETHTNIPELSSHYLCNTPPHYHG 659 (680)
T ss_dssp CCCCSSEECCSSCC---------------------
T ss_pred CccHHHHHHHHHhcCcccccccCCcEECCchHHCC
Confidence 995468999998776666664 5789999998866
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=4.1e-57 Score=578.41 Aligned_cols=622 Identities=21% Similarity=0.293 Sum_probs=352.9
Q ss_pred EEEEeeecccCcccCCccccccccceeEEEEEeCCceeeccCCCchhccCCcccceeEeccccCCCCChhhccCCccCce
Q psy5670 61 ALVCKLRTINSEIENTNFSIIQAQYTVRLRIECGDMLFFQSSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKT 140 (1269)
Q Consensus 61 ~~~c~~~~i~~~~~~~~~s~~~~~~~~~L~L~~~~~~~~~~~i~~~~f~~l~~L~~L~L~~~~i~~i~~~~f~~l~~L~~ 140 (1269)
.+.|.+..++.+|. . .+.++++|+|++|. ...+++.+|+++++|++|+|++|.++.+.+++|.++++|++
T Consensus 8 ~~~cs~~~L~~ip~-----~-~~~~l~~L~Ls~n~----l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 77 (680)
T 1ziw_A 8 VADCSHLKLTQVPD-----D-LPTNITVLNLTHNQ----LRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKV 77 (680)
T ss_dssp EEECCSSCCSSCCS-----C-SCTTCSEEECCSSC----CCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCE
T ss_pred eeECCCCCcccccc-----c-cCCCCcEEECCCCC----CCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCE
Confidence 57888888888762 1 24667777777777 45666666777777777777777766666555555555555
Q ss_pred eecccccCCCCccceeccchhhhhcCCCCCEEEccCCCCccCCcccCCCCCCCcEEECCCCCCCCCCccccCCCCcccCC
Q psy5670 141 LTLRTHNTDWSTMSLDISHNVFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCG 220 (1269)
Q Consensus 141 L~L~~~~~~~~~~~~~i~~~~f~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l 220 (1269)
|+++++.. ..+.+.+| +++++|++|++++|.+..+++..|+++++|++|++++|++.+..+..+.. +
T Consensus 78 L~L~~n~l------~~l~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~------l 144 (680)
T 1ziw_A 78 LNLQHNEL------SQLSDKTF-AFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQ------L 144 (680)
T ss_dssp EECCSSCC------CCCCTTTT-TTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSC------C
T ss_pred EECCCCcc------CccChhhh-ccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcc------c
Confidence 55543322 12333344 55555555555555555555444555555555555555554443333321 3
Q ss_pred CcccEEEcCCCCCCccCcccCC--CCCCCCEEEccCCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccc---cCCCCC
Q psy5670 221 INLRVLDLSNNSFDSLPAEGFS--RLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELF---NQSRDL 295 (1269)
Q Consensus 221 ~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f---~~l~~L 295 (1269)
++|++|++++|.++.+++..+. .+++|++|++++|.++++.+..|..+++|+.|+++++.+.......+ ...++|
T Consensus 145 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L 224 (680)
T 1ziw_A 145 ENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSI 224 (680)
T ss_dssp TTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCC
T ss_pred ccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccc
Confidence 4455555555555444433322 23445555555554444444444444444554444443321000000 012344
Q ss_pred cEEEeeCCcccccCcccccCCCCCCEEECcCCCCCccccCcccccCCCCccEEEcCCCCCcccCchhhcCCCCCcEEEcc
Q psy5670 296 KEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLE 375 (1269)
Q Consensus 296 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 375 (1269)
+.|++++|.+.++.+..|.+++. ++|+.|++++|.+.++.+..|..+++|++|+++
T Consensus 225 ~~L~L~~n~l~~~~~~~~~~l~~------------------------~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 280 (680)
T 1ziw_A 225 RNLSLSNSQLSTTSNTTFLGLKW------------------------TNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLE 280 (680)
T ss_dssp CEEECTTSCCCEECTTTTGGGGG------------------------SCCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred cEEEccCCcccccChhHhhccCc------------------------CCCCEEECCCCCcCccCcccccCcccccEeeCC
Confidence 44444444444444444443322 125555555555555444445555555555555
Q ss_pred CCcccccccccccCCCCCcEEEccCCccc---------ccCcccccCCCCCCEEEccCCCCCccChhhhcCCCCCcEEEc
Q psy5670 376 NNQIESIHRNTFASLSNLHTLIMSNNKLK---------RIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHL 446 (1269)
Q Consensus 376 ~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~---------~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 446 (1269)
+|.+..+.+..|..+++|+.|++++|... .+....|..+++|++|++++|.+.++.+..|.++++|++|++
T Consensus 281 ~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 360 (680)
T 1ziw_A 281 YNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSL 360 (680)
T ss_dssp SCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEEC
T ss_pred CCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEEC
Confidence 55555544444555555555555443222 222234555666666666666666666666666666666666
Q ss_pred cCCCCC--Cchh-hhc--CCCCCcEEECCCCCCCccChhhhhccccCCeeeccCCcC-CCCChhhhcCCCCCCEEEcCCC
Q psy5670 447 NGNKLT--EIPK-VLR--NLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNI-SNISKGVFEKLSVLTILNLASN 520 (1269)
Q Consensus 447 s~n~l~--~lp~-~l~--~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l-~~i~~~~f~~l~~L~~L~Ls~n 520 (1269)
++|.+. .++. .+. ..++|+.|++++|.++++.+..|..+++|+.|++++|.+ +.++...|.++++|++|++++|
T Consensus 361 s~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n 440 (680)
T 1ziw_A 361 SNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYN 440 (680)
T ss_dssp TTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSC
T ss_pred CCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCC
Confidence 666432 2222 121 124566666666666666666666666666666666666 3455555666666666666666
Q ss_pred ccccccccccCCCCCccEEEccccccc---ccCCcCCCCCCCcEEEccCCcCcccccccc--CCCccEEECCCCCccccc
Q psy5670 521 KIQKVEAGTFDNNSNLVAIRLDGNYLT---DIGGLFPKLPNLVWLNISENLLEWFDYALI--PADLQWLDIHGNQISELG 595 (1269)
Q Consensus 521 ~i~~~~~~~~~~~~~L~~L~L~~n~l~---~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~l--p~~L~~L~Ls~n~l~~~~ 595 (1269)
++.++.+..|..+++|+.|++++|.+. .+|..|..+++|+.|++++|+++.++...+ .++|++|++++|+++.++
T Consensus 441 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~ 520 (680)
T 1ziw_A 441 KYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLW 520 (680)
T ss_dssp SEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGG
T ss_pred CcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccc
Confidence 666666666666666666666666654 335556666666666666666665543322 245666777777666543
Q ss_pred c-------cccccccccccEEEcCCCccccccCCccc--CCccEEEccCcccccccCCccCCCCCccEEEcCCCCccccc
Q psy5670 596 N-------YFEIESQLRLTYFDASSNKLTELTGNAIP--HSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNIN 666 (1269)
Q Consensus 596 ~-------~~~l~~~~~L~~LdLs~N~l~~~~~~~~~--~~L~~L~Ls~N~i~~~~~~~f~~~~~L~~LdLs~N~l~~l~ 666 (1269)
. ...+..+++|+.|++++|+++.++...+. .+|+.|+|++|+++++.+..|..+++|+.|+|++|+|++++
T Consensus 521 ~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~ 600 (680)
T 1ziw_A 521 KHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVE 600 (680)
T ss_dssp STTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCC
T ss_pred hhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccC
Confidence 2 12256778999999999999988875554 58999999999999999999999999999999999999998
Q ss_pred ccccccccCCCCCCCCceEecCCccccccCC-hhHHhhccccccCCCcccc-cCccccccccccCCCccccccc
Q psy5670 667 QTALRISPLPSHKNIPDFYIGENPFQCDCNM-QWLQSYSVNKERNKPNLVD-LDTVTCKLLYNRANPAILLKEA 738 (1269)
Q Consensus 667 ~~~~~~~~~~~~~~l~~l~l~~Np~~c~c~~-~~l~~~~~~~~~~~~~~~~-l~~~~c~~~~~~~~~~~~l~~~ 738 (1269)
+..+. +..++++.+++++|||.|+|.+ .|+..|-.. ....+.+ ...+.|..+.. ..+.++.++
T Consensus 601 ~~~~~----~~~~~L~~l~l~~N~~~c~c~~~~~~~~~~~~---~~~~~~~~~~~~~C~~p~~--~~g~~l~~~ 665 (680)
T 1ziw_A 601 KKVFG----PAFRNLTELDMRFNPFDCTCESIAWFVNWINE---THTNIPELSSHYLCNTPPH--YHGFPVRLF 665 (680)
T ss_dssp HHHHH----HHHTTCSEEECTTCCCCBCCCCCSSEECCSSC---C-----------------------------
T ss_pred hhHhc----ccccccCEEEccCCCcccCCccHHHHHHHHHh---cCcccccccCCcEECCchH--HCCCccccc
Confidence 86552 1235788999999999999996 888765321 1122222 24567765432 334444443
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.3e-55 Score=569.32 Aligned_cols=666 Identities=22% Similarity=0.189 Sum_probs=429.7
Q ss_pred ccCCCCChhhccCCccCceeecccccCCCCccceeccchhhhhcCCCCCEEEccCCCCccCCcccCCCCCCCcEEECCCC
Q psy5670 122 CKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHNVFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQN 201 (1269)
Q Consensus 122 ~~i~~i~~~~f~~l~~L~~L~L~~~~~~~~~~~~~i~~~~f~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~n 201 (1269)
|.+..+.-+ -..++.|+|+++... +. ....+.++ .++++|+.++++.+.+..+|.. |+.+++|++|+|++|
T Consensus 40 C~w~gv~C~----~~~v~~L~L~~~~l~--g~-~~~l~~~l-~~L~~L~~l~~~~~~~~~l~~~-~~~l~~L~~L~Ls~n 110 (768)
T 3rgz_A 40 CTFDGVTCR----DDKVTSIDLSSKPLN--VG-FSAVSSSL-LSLTGLESLFLSNSHINGSVSG-FKCSASLTSLDLSRN 110 (768)
T ss_dssp GGSTTEEEE----TTEEEEEECTTSCCC--EE-HHHHHHHT-TTCTTCCEEECTTSCEEECCCC-CCCCTTCCEEECCSS
T ss_pred cCCcceEEC----CCcEEEEECCCCCcC--Cc-cCccChhH-hccCcccccCCcCCCcCCCchh-hccCCCCCEEECCCC
Confidence 555554332 257888888654321 10 01124567 7888888888888877665554 688888888888888
Q ss_pred CCCCCCcc--ccCCCCcccCCCcccEEEcCCCCCCccCcccC-CCCCCCCEEEccCCCCcccchhh---hcCCCCCcEEE
Q psy5670 202 KLSNVATF--SFSNYDTARCGINLRVLDLSNNSFDSLPAEGF-SRLSRLQELYLQGNILTFLADHA---LDGLNSLTVLN 275 (1269)
Q Consensus 202 ~l~~~~~~--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~---~~~l~~L~~L~ 275 (1269)
.+.+..+. .+ ..+++|++|+|++|.++...+..+ .++++|++|++++|.+++..+.. +.++++|++|+
T Consensus 111 ~l~~~~~~~~~l------~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~ 184 (768)
T 3rgz_A 111 SLSGPVTTLTSL------GSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLA 184 (768)
T ss_dssp EEEEEGGGGGGG------GGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEE
T ss_pred cCCCcCCChHHH------hCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEE
Confidence 87754333 33 346788888888888775544433 77888888888888888777665 67788888888
Q ss_pred ccCCCCCCCCcccccCCCCCcEEEeeCCcccccCcccccCCCCCCEEECcCCCCCccccCcccccCCCCccEEEcCCCCC
Q psy5670 276 LSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKM 355 (1269)
Q Consensus 276 Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l 355 (1269)
+++|.+....+ +..+++|++|++++|.+.+..+. ++++++|++|++++|.+.+ ..+..+.++++|++|++++|.+
T Consensus 185 Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~--~~~~~l~~l~~L~~L~Ls~n~l 259 (768)
T 3rgz_A 185 ISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSG--DFSRAISTCTELKLLNISSNQF 259 (768)
T ss_dssp CCSSEEESCCB--CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCS--CHHHHTTTCSSCCEEECCSSCC
T ss_pred CCCCcccccCC--cccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCC--cccHHHhcCCCCCEEECCCCcc
Confidence 88887765544 25677778888877777776555 6777777777777777765 2355667777777777777777
Q ss_pred cccCchhhcCCCCCcEEEccCCccc-ccccccccCCCCCcEEEccCCcccccCcccccCCCCCCEEEccCCCCC-ccChh
Q psy5670 356 NKLDSSIFKDLYRLQVLHLENNQIE-SIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELE-YIEEN 433 (1269)
Q Consensus 356 ~~~~~~~~~~l~~L~~L~Ls~n~l~-~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~ 433 (1269)
.+..+.. .+++|++|++++|.++ .++...+..+++|+.|++++|.+++..+..+..+++|++|++++|.+. .++..
T Consensus 260 ~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~ 337 (768)
T 3rgz_A 260 VGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMD 337 (768)
T ss_dssp EESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHH
T ss_pred cCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHH
Confidence 6544432 5667777777777766 333332233466777777777776666666666677777777776666 33334
Q ss_pred hhcCCCCCcEEEccCCCCC-CchhhhcCCC-CCcEEECCCCCCCccChhhhhc--cccCCeeeccCCcCCCCChhhhcCC
Q psy5670 434 ALKNSTSLQDFHLNGNKLT-EIPKVLRNLH-SLKTLDLGDNLITEINNLSLNS--LHQLAGLRLTENNISNISKGVFEKL 509 (1269)
Q Consensus 434 ~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~-~L~~L~Ls~n~i~~~~~~~~~~--l~~L~~L~Ls~n~l~~i~~~~f~~l 509 (1269)
.+..+++|++|++++|.++ .+|..+..++ +|++|++++|.+++..+..+.. +++|+.|++++|.+....+..|.++
T Consensus 338 ~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l 417 (768)
T 3rgz_A 338 TLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNC 417 (768)
T ss_dssp HHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGC
T ss_pred HHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcC
Confidence 4666666666666666665 5565555554 6666666666666554444433 4556666666666643333345556
Q ss_pred CCCCEEEcCCCccccccccccCCCCCccEEEccccccc-ccCCcCCCCCCCcEEEccCCcCccccccccCCCccEEECCC
Q psy5670 510 SVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLT-DIGGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHG 588 (1269)
Q Consensus 510 ~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~-~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~lp~~L~~L~Ls~ 588 (1269)
++|++|++++|++++..+..|..+++|+.|++++|.++ .+|..+..+++|+.|++++|+++.
T Consensus 418 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~----------------- 480 (768)
T 3rgz_A 418 SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTG----------------- 480 (768)
T ss_dssp TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCS-----------------
T ss_pred CCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccC-----------------
Confidence 66666666666666555555555566666666666555 334444455555555554444431
Q ss_pred CCcccccccccccccccccEEEcCCCccccccCCccc--CCccEEEccCcccccccCCccCCCCCccEEEcCCCCccccc
Q psy5670 589 NQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIP--HSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNIN 666 (1269)
Q Consensus 589 n~l~~~~~~~~l~~~~~L~~LdLs~N~l~~~~~~~~~--~~L~~L~Ls~N~i~~~~~~~f~~~~~L~~LdLs~N~l~~l~ 666 (1269)
.++. .+..+++|++|++++|++++..+..+. ++|++|+|++|++++..|..+..+++|+.|||++|++++.-
T Consensus 481 ----~~p~--~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i 554 (768)
T 3rgz_A 481 ----EIPS--GLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI 554 (768)
T ss_dssp ----CCCG--GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBC
T ss_pred ----cCCH--HHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcC
Confidence 1111 234566777888888877765554443 46777777777777777777777777777777777776422
Q ss_pred ccccccccCCCCCCCCceEecCCccccccCChhHHhhccccccCCCcccccCccccccccccCCCcccccccCCCccccc
Q psy5670 667 QTALRISPLPSHKNIPDFYIGENPFQCDCNMQWLQSYSVNKERNKPNLVDLDTVTCKLLYNRANPAILLKEAHSNQFLCE 746 (1269)
Q Consensus 667 ~~~~~~~~~~~~~~l~~l~l~~Np~~c~c~~~~l~~~~~~~~~~~~~~~~l~~~~c~~~~~~~~~~~~l~~~~~~~~~~~ 746 (1269)
+..+ ...... ..... .....+..+.....
T Consensus 555 p~~~-----------------------------~~~~~~---------~~~~~----------~~~~~~~~~~~~~~--- 583 (768)
T 3rgz_A 555 PAAM-----------------------------FKQSGK---------IAANF----------IAGKRYVYIKNDGM--- 583 (768)
T ss_dssp CGGG-----------------------------GTTTTC---------BCCST----------TCSCEEEEEECCSC---
T ss_pred ChHH-----------------------------hcccch---------hhhhc----------cccccccccccccc---
Confidence 2111 110000 00000 00000000000000
Q ss_pred cccCcccccccccCCCCcccCCCCCCceecCCCCCcceeeecCCCCccccCCCCCCCCCcEEEecCCCCCCcCCCcCCCC
Q psy5670 747 YETNCAPLCHCCDFDACDCEMTCPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGR 826 (1269)
Q Consensus 747 ~~~~~~~~~~~~~~~~~~~~~~cp~~C~c~~~~~~~~~~v~c~~~~l~~~~p~~~p~~~~~l~l~~n~i~~l~~~~f~~~ 826 (1269)
.. .|. .... .+.+ ..+.+..+..+
T Consensus 584 -----------------------~~--~~~----~~~~----------------------~~~~-----~~~~~~~~~~l 607 (768)
T 3rgz_A 584 -----------------------KK--ECH----GAGN----------------------LLEF-----QGIRSEQLNRL 607 (768)
T ss_dssp -----------------------CT--TCC----SSEE----------------------EEEC-----TTCCGGGGGGG
T ss_pred -----------------------cc--ccc----cccc----------------------cccc-----ccccchhhhcc
Confidence 00 000 0000 0111 11112223334
Q ss_pred CCccEEEccCcCccccccccccCCCCCCEEeCCCCCCcccCcccccCCcccCeeecccccCcccChhhhhcCcccceEec
Q psy5670 827 KKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQL 906 (1269)
Q Consensus 827 ~~L~~L~l~~n~i~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L 906 (1269)
..++.+++..|.+....+..|..+++|+.|||++|++++..|..|.++++|+.|+|++|+|++..|..|+++++|++|||
T Consensus 608 ~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdL 687 (768)
T 3rgz_A 608 STRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDL 687 (768)
T ss_dssp GGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred ccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEEC
Confidence 55666788888888888999999999999999999999998999999999999999999999999999999999999999
Q ss_pred cCccceeeecc-c-ccCCccEEEeeCCcccccCCc
Q psy5670 907 DHNRITSFAVW-H-LSSQIQSITLTSNPWSCDCDF 939 (1269)
Q Consensus 907 ~~N~l~~~~~~-~-~~~~l~~l~l~~Np~~C~C~~ 939 (1269)
++|++++..|. + .+++|+.|++++|++...-+.
T Consensus 688 s~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~ 722 (768)
T 3rgz_A 688 SSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722 (768)
T ss_dssp CSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCS
T ss_pred CCCcccCcCChHHhCCCCCCEEECcCCcccccCCC
Confidence 99999987777 6 889999999999999987663
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=9.5e-54 Score=539.78 Aligned_cols=562 Identities=22% Similarity=0.255 Sum_probs=388.5
Q ss_pred EEEccCCCCCCCCcccccCCCCCcEEEeeCCcccccCcccccCCCCCCEEECcCCCCCccccCcccccCCCCccEEEcCC
Q psy5670 273 VLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAY 352 (1269)
Q Consensus 273 ~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~ 352 (1269)
.++.++..++.+|... .+.+++|++++|.++++.+..|.++++|++|++++|.+.. +.+..|.++++|++|++++
T Consensus 16 ~~~c~~~~l~~iP~~l---~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~--~~~~~~~~l~~L~~L~Ls~ 90 (606)
T 3t6q_A 16 TYNCENLGLNEIPGTL---PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW--IHEDTFQSQHRLDTLVLTA 90 (606)
T ss_dssp EEECTTSCCSSCCTTS---CTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCE--ECTTTTTTCTTCCEEECTT
T ss_pred eEECCCCCcccCcCCC---CCcCcEEEccCCccCcCChhHhccCccceEEECCCCccce--eChhhccCccccCeeeCCC
Confidence 4555555566665433 3356666666666666666666666666666666666655 4455566666666666666
Q ss_pred CCCcccCchhhcCCCCCcEEEccCCcccccccccccCCCCCcEEEccCCcccccCcccccCCCCCCEEEccCCCCCccCh
Q psy5670 353 NKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEE 432 (1269)
Q Consensus 353 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~ 432 (1269)
|.+..+.+..|.++++|++|++++|.++.+.+..|..+++|++|++++|++.++....+..+++|+.|++++|.+.++.+
T Consensus 91 n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 170 (606)
T 3t6q_A 91 NPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSK 170 (606)
T ss_dssp CCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECH
T ss_pred CcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccCh
Confidence 66666666666666666666666666666655566666667777777766666544444456677777777777776666
Q ss_pred hhhcCCCCCc--EEEccCCCCCCchhhhcCCCCCcEEECCCCCCCccChhhhhccccCCeeeccC-----CcCCCCChhh
Q psy5670 433 NALKNSTSLQ--DFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTE-----NNISNISKGV 505 (1269)
Q Consensus 433 ~~~~~l~~L~--~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~-----n~l~~i~~~~ 505 (1269)
..++.+++|+ .|++++|.+..++.......+|++|++++|.. .+..+..+..+....+.- .....++...
T Consensus 171 ~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~---~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~ 247 (606)
T 3t6q_A 171 EDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQN---LLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAV 247 (606)
T ss_dssp HHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSC---HHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGG
T ss_pred hhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchh---HHHHhhhccccchhheechhhccccccccChhH
Confidence 6666677776 66777777666655444445677777776651 122333333332222211 1223444555
Q ss_pred hcCCC--CCCEEEcCCCccccccccccCCCCCccEEEcccccccccCCcCCCCCCCcEEEccCCcCcccccccc--CCCc
Q psy5670 506 FEKLS--VLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYALI--PADL 581 (1269)
Q Consensus 506 f~~l~--~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~l--p~~L 581 (1269)
|.++. +|+.|++++|.++++.+..|..+++|+.|++++|.++.+|..+..+++|+.|++++|.++......+ .++|
T Consensus 248 ~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 327 (606)
T 3t6q_A 248 FEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSL 327 (606)
T ss_dssp GGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTC
T ss_pred hchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcC
Confidence 55554 6778888888888877777888888888888888888887777777888888888877765432111 2356
Q ss_pred cEEECCCCCcc-cccccccccccccccEEEcCCCcccccc--CCcc--cCCccEEEccCcccccccCCccCCCCCccEEE
Q psy5670 582 QWLDIHGNQIS-ELGNYFEIESQLRLTYFDASSNKLTELT--GNAI--PHSVENLFLTNNLISKVQPYTFFMKPNLTRVD 656 (1269)
Q Consensus 582 ~~L~Ls~n~l~-~~~~~~~l~~~~~L~~LdLs~N~l~~~~--~~~~--~~~L~~L~Ls~N~i~~~~~~~f~~~~~L~~Ld 656 (1269)
++|++++|.+. .++. ..+..+++|++|++++|+++++. +..+ .++|++|++++|+++++.|..|..+++|+.|+
T Consensus 328 ~~L~l~~n~~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 406 (606)
T 3t6q_A 328 THLSIKGNTKRLELGT-GCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLD 406 (606)
T ss_dssp SEEECCSCSSCCBCCS-STTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEE
T ss_pred CEEECCCCCcccccch-hhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEE
Confidence 66666666554 2221 12345566666666666666553 2222 23566666666666666666666666666666
Q ss_pred cCCCCcccccccccccccCCCCCCCCceEecCCccccccCChhHHhhccccccCCCcccccCccccccccccCCCccccc
Q psy5670 657 LVGNRLKNINQTALRISPLPSHKNIPDFYIGENPFQCDCNMQWLQSYSVNKERNKPNLVDLDTVTCKLLYNRANPAILLK 736 (1269)
Q Consensus 657 Ls~N~l~~l~~~~~~~~~~~~~~~l~~l~l~~Np~~c~c~~~~l~~~~~~~~~~~~~~~~l~~~~c~~~~~~~~~~~~l~ 736 (1269)
+++|+++...+...
T Consensus 407 l~~n~l~~~~~~~~------------------------------------------------------------------ 420 (606)
T 3t6q_A 407 LAFTRLKVKDAQSP------------------------------------------------------------------ 420 (606)
T ss_dssp CTTCCEECCTTCCT------------------------------------------------------------------
T ss_pred CCCCcCCCcccchh------------------------------------------------------------------
Confidence 66665543211000
Q ss_pred ccCCCccccccccCcccccccccCCCCcccCCCCCCceecCCCCCcceeeecCCCCccccCCCCCCCCCcEEEecCCCCC
Q psy5670 737 EAHSNQFLCEYETNCAPLCHCCDFDACDCEMTCPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIP 816 (1269)
Q Consensus 737 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cp~~C~c~~~~~~~~~~v~c~~~~l~~~~p~~~p~~~~~l~l~~n~i~ 816 (1269)
+.. ...+++|++++|.++
T Consensus 421 --------------------------------------------------------~~~------l~~L~~L~l~~n~l~ 438 (606)
T 3t6q_A 421 --------------------------------------------------------FQN------LHLLKVLNLSHSLLD 438 (606)
T ss_dssp --------------------------------------------------------TTT------CTTCCEEECTTCCCB
T ss_pred --------------------------------------------------------hhC------cccCCEEECCCCccC
Confidence 000 023578899999999
Q ss_pred CcCCCcCCCCCCccEEEccCcCcccc---ccccccCCCCCCEEeCCCCCCcccCcccccCCcccCeeecccccCcccChh
Q psy5670 817 VVGSHSFIGRKKLQILFLNSSHVETI---HNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNR 893 (1269)
Q Consensus 817 ~l~~~~f~~~~~L~~L~l~~n~i~~i---~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~ 893 (1269)
.+.+..|.++++|+.|++++|+++.. .+..|..+++|+.|+|++|+++.+.+.+|.++++|++|+|++|+|+.+++.
T Consensus 439 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 518 (606)
T 3t6q_A 439 ISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIE 518 (606)
T ss_dssp TTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGG
T ss_pred CcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChh
Confidence 88888899999999999999999873 336799999999999999999999999999999999999999999999999
Q ss_pred hhhcCcccceEeccCccceeeecc-c-ccCCccEEEeeCCcccccCCcHHHHHHHHHhccCCcCccCcceeccCCcccee
Q psy5670 894 TFLSLTHLKVLQLDHNRITSFAVW-H-LSSQIQSITLTSNPWSCDCDFTEKFRDYLQRSRSSVHDISQIRCMTGSEVGFT 971 (1269)
Q Consensus 894 ~f~~l~~L~~L~L~~N~l~~~~~~-~-~~~~l~~l~l~~Np~~C~C~~~~~~~~w~~~~~~~i~~~~~~~C~~p~~~~~~ 971 (1269)
.|..+++| +|+|++|+++++++. + .+++|+.+++++|||.|+|+. .||..|++.....+.+...++|.+|+..+|.
T Consensus 519 ~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~-~~~~~w~~~~~~~~~~~~~~~C~~p~~~~g~ 596 (606)
T 3t6q_A 519 ALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN-IYFLEWYKENMQKLEDTEDTLCENPPLLRGV 596 (606)
T ss_dssp GGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGG-HHHHHHHHHCGGGEECGGGCBEEESGGGTTC
T ss_pred HhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCc-HHHHHHHHhCcccccCCCCCeeCCchHhCCC
Confidence 99999999 999999999999998 6 789999999999999999996 6999999987677777788999999988764
Q ss_pred ee
Q psy5670 972 IM 973 (1269)
Q Consensus 972 ~~ 973 (1269)
.+
T Consensus 597 ~l 598 (606)
T 3t6q_A 597 RL 598 (606)
T ss_dssp BG
T ss_pred ee
Confidence 33
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=4.2e-52 Score=524.75 Aligned_cols=562 Identities=22% Similarity=0.261 Sum_probs=357.7
Q ss_pred CEEEccCCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCCcccccCcccccCCCCCCEEECcCC
Q psy5670 248 QELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNN 327 (1269)
Q Consensus 248 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 327 (1269)
++++.+++.++.++.. +. ++|++|++++|+++.+++..|.++++|++|++++|.++++.+..|.++++|++|++++|
T Consensus 14 ~~~~c~~~~l~~ip~~-~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n 90 (606)
T 3vq2_A 14 ITYQCMDQKLSKVPDD-IP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN 90 (606)
T ss_dssp TEEECTTSCCSSCCTT-SC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred CceEccCCCcccCCCC-CC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCC
Confidence 4566666666666542 21 56677777777776666666666777777777777666666666666677777777766
Q ss_pred CCCccccCcccccCCCCccEEEcCCCCCcccCchhhcCCCCCcEEEccCCcccccc-cccccCCCCCcEEEccCCccccc
Q psy5670 328 ELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIH-RNTFASLSNLHTLIMSNNKLKRI 406 (1269)
Q Consensus 328 ~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~-~~~f~~l~~L~~L~Ls~n~l~~~ 406 (1269)
.+.+ +.+..|.++++|++|++++|.+.++++..++++++|++|++++|.+..+. +..|.++++|+.|++++|+++++
T Consensus 91 ~l~~--~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~ 168 (606)
T 3vq2_A 91 PIQS--FSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI 168 (606)
T ss_dssp CCCC--CCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEE
T ss_pred cccc--cChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceec
Confidence 6665 44556666666777777666666666555666666666666666666432 44566666666666666666666
Q ss_pred CcccccCCCCCC----EEEccCCCCCccChhhhcCCCCCcEEEccCCCCC--CchhhhcCCCCCcEEECCCCCCCccChh
Q psy5670 407 ESNSLDSLTALS----VLSLDNNELEYIEENALKNSTSLQDFHLNGNKLT--EIPKVLRNLHSLKTLDLGDNLITEINNL 480 (1269)
Q Consensus 407 ~~~~~~~l~~L~----~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~--~lp~~l~~l~~L~~L~Ls~n~i~~~~~~ 480 (1269)
.+..++.+++|+ .|++++|.+.++.+..+... +|+.|++++|.+. .+|..+..++.|+.+++..+.+....
T Consensus 169 ~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~-- 245 (606)
T 3vq2_A 169 TVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDER-- 245 (606)
T ss_dssp CTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSC--
T ss_pred ChhhhhhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCC--
Confidence 555555544443 56666666666665555444 5666666666654 34455566666666555433222110
Q ss_pred hhhccccCCeeeccCCcCCCCChhhhcCCC--CCCEEEc-CCCccccccccccCCCCCccEEEcccccccccCCcCCCCC
Q psy5670 481 SLNSLHQLAGLRLTENNISNISKGVFEKLS--VLTILNL-ASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLP 557 (1269)
Q Consensus 481 ~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~--~L~~L~L-s~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~l~~~~~~l~ 557 (1269)
.+..+....+.++. .++.+++ ..|.+.+..+. +..+++|+.|++++|.+..++ .+..++
T Consensus 246 ----------------~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~l~-~l~~~~ 307 (606)
T 3vq2_A 246 ----------------NLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKYLE-DVPKHF 307 (606)
T ss_dssp ----------------CCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCCCC-CCCTTC
T ss_pred ----------------cccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccchhhh-hccccc
Confidence 00111122222222 2233333 33444444333 444555555555555555444 444445
Q ss_pred CCcEEEccCCcCccccccccCCCccEEECCCCCcccccccccccccccccEEEcCCCcccccc--CCcc--cCCccEEEc
Q psy5670 558 NLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELT--GNAI--PHSVENLFL 633 (1269)
Q Consensus 558 ~L~~L~Ls~n~l~~~~~~~lp~~L~~L~Ls~n~l~~~~~~~~l~~~~~L~~LdLs~N~l~~~~--~~~~--~~~L~~L~L 633 (1269)
+|+.|++++|.++.++.. -.++|+.|++++|+..... .+..+++|++|++++|+++++. +..+ .++|++|++
T Consensus 308 ~L~~L~l~~n~l~~lp~~-~l~~L~~L~l~~n~~~~~~---~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L 383 (606)
T 3vq2_A 308 KWQSLSIIRCQLKQFPTL-DLPFLKSLTLTMNKGSISF---KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDL 383 (606)
T ss_dssp CCSEEEEESCCCSSCCCC-CCSSCCEEEEESCSSCEEC---CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEEC
T ss_pred cCCEEEcccccCcccccC-CCCccceeeccCCcCccch---hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeEC
Confidence 555555555544433321 2223444444444221111 1234456666666666665542 1111 135666666
Q ss_pred cCcccccccCCccCCCCCccEEEcCCCCcccccc-cccccccCCCCCCCCceEecCCccccccCChhHHhhccccccCCC
Q psy5670 634 TNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQ-TALRISPLPSHKNIPDFYIGENPFQCDCNMQWLQSYSVNKERNKP 712 (1269)
Q Consensus 634 s~N~i~~~~~~~f~~~~~L~~LdLs~N~l~~l~~-~~~~~~~~~~~~~l~~l~l~~Np~~c~c~~~~l~~~~~~~~~~~~ 712 (1269)
++|.++++. ..|..+++|+.|++++|++.++.+ ..+
T Consensus 384 ~~n~l~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~------------------------------------------ 420 (606)
T 3vq2_A 384 SFNGAIIMS-ANFMGLEELQHLDFQHSTLKRVTEFSAF------------------------------------------ 420 (606)
T ss_dssp CSCSEEEEC-CCCTTCTTCCEEECTTSEEESTTTTTTT------------------------------------------
T ss_pred CCCccccch-hhccCCCCCCeeECCCCccCCccChhhh------------------------------------------
Confidence 666655543 456666666666666665554221 000
Q ss_pred cccccCccccccccccCCCcccccccCCCccccccccCcccccccccCCCCcccCCCCCCceecCCCCCcceeeecCCCC
Q psy5670 713 NLVDLDTVTCKLLYNRANPAILLKEAHSNQFLCEYETNCAPLCHCCDFDACDCEMTCPNNCTCYHDVSWEANVIDCSTGG 792 (1269)
Q Consensus 713 ~~~~l~~~~c~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cp~~C~c~~~~~~~~~~v~c~~~~ 792 (1269)
T Consensus 421 -------------------------------------------------------------------------------- 420 (606)
T 3vq2_A 421 -------------------------------------------------------------------------------- 420 (606)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCCCCCCCcEEEecCCCCCCcCCCcCCCCCCccEEEccCcCccc-cccccccCCCCCCEEeCCCCCCcccCcccc
Q psy5670 793 YDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVET-IHNKTFNGLKELIILRLDDNRLTEIRGYEF 871 (1269)
Q Consensus 793 l~~~~p~~~p~~~~~l~l~~n~i~~l~~~~f~~~~~L~~L~l~~n~i~~-i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f 871 (1269)
..+ ..+++|++++|.++.+.+..|.++++|+.|++++|+++. +.+..|..+++|+.|+|++|+++.+.+..|
T Consensus 421 -~~l------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 493 (606)
T 3vq2_A 421 -LSL------EKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVF 493 (606)
T ss_dssp -TTC------TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTT
T ss_pred -hcc------ccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhh
Confidence 000 234778888888888777888999999999999999997 678899999999999999999999999999
Q ss_pred cCCcccCeeecccccCcccChhhhhcCcccceEeccCccceeeeccc-ccC-CccEEEeeCCcccccCCcHHHHHHHHHh
Q psy5670 872 ERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWH-LSS-QIQSITLTSNPWSCDCDFTEKFRDYLQR 949 (1269)
Q Consensus 872 ~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~-~~~-~l~~l~l~~Np~~C~C~~~~~~~~w~~~ 949 (1269)
.++++|++|+|++|+|+.+++..|..+++|++|+|++|+|+.++..+ .++ +|+.+++++|||.|+|+. .||.+|++.
T Consensus 494 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~c~c~~-~~~~~~l~~ 572 (606)
T 3vq2_A 494 DTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACICEH-QKFLQWVKE 572 (606)
T ss_dssp TTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCCCCSSTT-HHHHTTTTT
T ss_pred cccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCcccCCcc-HHHHHHHHc
Confidence 99999999999999999999999999999999999999999999984 554 699999999999999997 799999988
Q ss_pred ccCCcCccCcceeccCCccce
Q psy5670 950 SRSSVHDISQIRCMTGSEVGF 970 (1269)
Q Consensus 950 ~~~~i~~~~~~~C~~p~~~~~ 970 (1269)
....+.+..+++|..|+..++
T Consensus 573 ~~~~~~~~~~~~C~~p~~~~~ 593 (606)
T 3vq2_A 573 QKQFLVNVEQMTCATPVEMNT 593 (606)
T ss_dssp SSSSBSSGGGCCCC-------
T ss_pred CcccccCCccceeCCChHhCC
Confidence 777777888999999998765
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=4.1e-51 Score=515.76 Aligned_cols=576 Identities=22% Similarity=0.301 Sum_probs=330.2
Q ss_pred CCCCCCCcccccccCCcccccCCCCCCCCceEEEEeeecccCcccCCccccccccceeEEEEEeCCceeeccCCCchhcc
Q psy5670 30 YQAPDECKWFAVTSEGAEIEVPSAAEPDQEVALVCKLRTINSEIENTNFSIIQAQYTVRLRIECGDMLFFQSSLSPGSFQ 109 (1269)
Q Consensus 30 ~~cp~~C~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~i~~~~~~~~~s~~~~~~~~~L~L~~~~~~~~~~~i~~~~f~ 109 (1269)
+.||..|.|... ...+.|....++.+|. ..|..+++|+|++|. .+.+++.+|+
T Consensus 2 ~~~~~~C~~~~~-----------------~~~~~c~~~~l~~iP~------~l~~~l~~L~Ls~n~----i~~~~~~~~~ 54 (606)
T 3t6q_A 2 TSSDQKCIEKEV-----------------NKTYNCENLGLNEIPG------TLPNSTECLEFSFNV----LPTIQNTTFS 54 (606)
T ss_dssp ----CCCEEEET-----------------TTEEECTTSCCSSCCT------TSCTTCCEEECTTCC----CSEECTTTST
T ss_pred ccccCceecccC-----------------CceEECCCCCcccCcC------CCCCcCcEEEccCCc----cCcCChhHhc
Confidence 458888999742 1168898888888762 124556666666666 3445555566
Q ss_pred CCcccceeEeccccCCCCChhhccCCccCceeecccccCCCCccceeccchhhhhcCCCCCEEEccCCCCccCCcccCCC
Q psy5670 110 TLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHNVFTDELQSLESLDLSMNSIWTLPDAIFCP 189 (1269)
Q Consensus 110 ~l~~L~~L~L~~~~i~~i~~~~f~~l~~L~~L~L~~~~~~~~~~~~~i~~~~f~~~l~~L~~L~Ls~n~l~~l~~~~~~~ 189 (1269)
++++|++|+|++|.+..+.+.+| .++++|++|+|++|.+..+++..|+.
T Consensus 55 ~l~~L~~L~Ls~n~i~~~~~~~~-------------------------------~~l~~L~~L~Ls~n~l~~~~~~~~~~ 103 (606)
T 3t6q_A 55 RLINLTFLDLTRCQIYWIHEDTF-------------------------------QSQHRLDTLVLTANPLIFMAETALSG 103 (606)
T ss_dssp TCTTCSEEECTTCCCCEECTTTT-------------------------------TTCTTCCEEECTTCCCSEECTTTTSS
T ss_pred cCccceEEECCCCccceeChhhc-------------------------------cCccccCeeeCCCCcccccChhhhcc
Confidence 66666666666655555544444 44555555555555555554445555
Q ss_pred CCCCcEEECCCCCCCCCCccccCCCCcccCCCcccEEEcCCCCCCccCcccCCCCCCCCEEEccCCCCcccchhhhcCCC
Q psy5670 190 LQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLN 269 (1269)
Q Consensus 190 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 269 (1269)
+++|++|++++|+++.+.+..+.. +++|++|++++|.++.++...+..+++|++|++++|.++.+.+..|+.++
T Consensus 104 l~~L~~L~L~~n~i~~l~~~~~~~------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 177 (606)
T 3t6q_A 104 PKALKHLFFIQTGISSIDFIPLHN------QKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQ 177 (606)
T ss_dssp CTTCCEEECTTSCCSCGGGSCCTT------CTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTT
T ss_pred cccccEeeccccCcccCCcchhcc------CCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhc
Confidence 555555555555555544433322 45566666666666655433344466666777766666666666666666
Q ss_pred CCc--EEEccCCCCCCCCcccccCCCCCcEEEeeCCcccccCcccccCCCCCCEEECcCCCCCc---cccCcccccCCC-
Q psy5670 270 SLT--VLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTE---EWVNAATFSGLH- 343 (1269)
Q Consensus 270 ~L~--~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~---~~~~~~~~~~l~- 343 (1269)
+|+ .|++++|.+..+++..|.. .+|+.|++++|.. .+..+..+.++....+....+.. ..+....+.++.
T Consensus 178 ~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~~---~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~ 253 (606)
T 3t6q_A 178 QATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQN---LLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCE 253 (606)
T ss_dssp TCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCSC---HHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGG
T ss_pred ccceeEEecCCCccCccChhHhhh-ccccccccCCchh---HHHHhhhccccchhheechhhccccccccChhHhchhhc
Confidence 666 6677777766666665543 4667777766641 12233444443333222211111 001122222222
Q ss_pred -CccEEEcCCCCCcccCchhhcCCCCCcEEEccCCcccccccccccCCCCCcEEEccCCcccccCcccccCCCCCCEEEc
Q psy5670 344 -RLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSL 422 (1269)
Q Consensus 344 -~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 422 (1269)
+|+.|++++|.+.++++..|..+++|++|++++|.++.++. .+..+++|++|++++|.+.+..+..+..+++|+.|++
T Consensus 254 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 332 (606)
T 3t6q_A 254 MSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPS-GLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSI 332 (606)
T ss_dssp SEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCS-SCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEEC
T ss_pred CceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCCh-hhcccccCCEEECccCCcCcCchhhhhccCcCCEEEC
Confidence 45555555555555555555555555555555555554443 2445555555555555555544444455555555555
Q ss_pred cCCCCC-ccChhhhcCCCCCcEEEccCCCCCCchhhhcCCCCCcEEECCCCCCCccC--hhhhhccccCCeeeccCCcCC
Q psy5670 423 DNNELE-YIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEIN--NLSLNSLHQLAGLRLTENNIS 499 (1269)
Q Consensus 423 s~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~--~~~~~~l~~L~~L~Ls~n~l~ 499 (1269)
++|.+. .+.+..+. .+++|++|++++|.+++.. +..+..+++|+.|++++|.+.
T Consensus 333 ~~n~~~~~~~~~~~~-----------------------~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 389 (606)
T 3t6q_A 333 KGNTKRLELGTGCLE-----------------------NLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPL 389 (606)
T ss_dssp CSCSSCCBCCSSTTT-----------------------TCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCE
T ss_pred CCCCcccccchhhhh-----------------------ccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCC
Confidence 555444 22233344 4445555555555544443 334455555555555555554
Q ss_pred CCChhhhcCCCCCCEEEcCCCccccccc-cccCCCCCccEEEccccccccc-CCcCCCCCCCcEEEccCCcCcccccccc
Q psy5670 500 NISKGVFEKLSVLTILNLASNKIQKVEA-GTFDNNSNLVAIRLDGNYLTDI-GGLFPKLPNLVWLNISENLLEWFDYALI 577 (1269)
Q Consensus 500 ~i~~~~f~~l~~L~~L~Ls~n~i~~~~~-~~~~~~~~L~~L~L~~n~l~~l-~~~~~~l~~L~~L~Ls~n~l~~~~~~~l 577 (1269)
.+++..|..+++|+.|++++|++.+..+ ..|..+++|+.|++++|.++.. +..+..+++|+.|++++|.++....
T Consensus 390 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--- 466 (606)
T 3t6q_A 390 SLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNI--- 466 (606)
T ss_dssp EECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEE---
T ss_pred cCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCcccc---
Confidence 4444455555666666666666555433 2355566666666666666543 3445556666666666665542100
Q ss_pred CCCccEEECCCCCcccccccccccccccccEEEcCCCccccccCCccc--CCccEEEccCcccccccCCccCCCCCccEE
Q psy5670 578 PADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIP--HSVENLFLTNNLISKVQPYTFFMKPNLTRV 655 (1269)
Q Consensus 578 p~~L~~L~Ls~n~l~~~~~~~~l~~~~~L~~LdLs~N~l~~~~~~~~~--~~L~~L~Ls~N~i~~~~~~~f~~~~~L~~L 655 (1269)
| ....+..+++|++|++++|+++++.+..+. ++|+.|+|++|++++..|..|..+++| .|
T Consensus 467 ~-----------------~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L 528 (606)
T 3t6q_A 467 Q-----------------KTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YL 528 (606)
T ss_dssp C-----------------SSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EE
T ss_pred c-----------------cchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EE
Confidence 0 001233456777777777777776655444 578899999999999989999999999 99
Q ss_pred EcCCCCcccccccccccccCCCCCCCCceEecCCccccccCChhHHhhccccccCCCcccccCcccccccc
Q psy5670 656 DLVGNRLKNINQTALRISPLPSHKNIPDFYIGENPFQCDCNMQWLQSYSVNKERNKPNLVDLDTVTCKLLY 726 (1269)
Q Consensus 656 dLs~N~l~~l~~~~~~~~~~~~~~~l~~l~l~~Np~~c~c~~~~l~~~~~~~~~~~~~~~~l~~~~c~~~~ 726 (1269)
++++|+++++++..+. ..++++.+++++||+.|+|...|+..|-. .....+.+...+.|..+.
T Consensus 529 ~L~~N~l~~~~~~~~~-----~l~~L~~L~l~~N~~~c~c~~~~~~~w~~---~~~~~~~~~~~~~C~~p~ 591 (606)
T 3t6q_A 529 NLASNHISIILPSLLP-----ILSQQRTINLRQNPLDCTCSNIYFLEWYK---ENMQKLEDTEDTLCENPP 591 (606)
T ss_dssp ECCSSCCCCCCGGGHH-----HHHTSSEEECTTCCEECSGGGHHHHHHHH---HCGGGEECGGGCBEEESG
T ss_pred ECcCCcccccCHhhcc-----cCCCCCEEeCCCCCccccCCcHHHHHHHH---hCcccccCCCCCeeCCch
Confidence 9999999998876653 34578899999999999999888776532 112234455677887654
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2e-48 Score=491.22 Aligned_cols=533 Identities=22% Similarity=0.291 Sum_probs=439.5
Q ss_pred CCCCEEEccCCCCccCCcccCCCCCCCcEEECCCCCCCCCCccccCCCCcccCCCcccEEEcCCCCCCccCcccCCCCCC
Q psy5670 167 QSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSR 246 (1269)
Q Consensus 167 ~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 246 (1269)
++|++|++++|.+..+++..|.++++|++|+|++|+++++.+..|.. +++|++|+|++|.++.+++..|+++++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~------l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 105 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHG------LHHLSNLILTGNPIQSFSPGSFSGLTS 105 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTT------CTTCCEEECTTCCCCCCCTTSSTTCTT
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhc------hhhcCEeECCCCcccccChhhcCCccc
Confidence 78999999999999999888999999999999999999887766654 689999999999999998888999999
Q ss_pred CCEEEccCCCCcccchhhhcCCCCCcEEEccCCCCCCCC-cccccCCCCCcEEEeeCCcccccCcccccCCCCCC----E
Q psy5670 247 LQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIP-PELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLI----V 321 (1269)
Q Consensus 247 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~-~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~----~ 321 (1269)
|++|++++|.++.+.+..|+++++|++|++++|.+..+. +..|.++++|++|++++|.++++.+..|+.+++|+ .
T Consensus 106 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~ 185 (606)
T 3vq2_A 106 LENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLS 185 (606)
T ss_dssp CCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCE
T ss_pred CCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccce
Confidence 999999999999988888999999999999999998643 56678999999999999999998888777766654 8
Q ss_pred EECcCCCCCccccCcccccCCCCccEEEcCCCCCc-ccCchhhcCCCCCcEEEccCCcc------cccccccccCCC--C
Q psy5670 322 LDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMN-KLDSSIFKDLYRLQVLHLENNQI------ESIHRNTFASLS--N 392 (1269)
Q Consensus 322 L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l------~~i~~~~f~~l~--~ 392 (1269)
|++++|.+.. +....+... +|+.|++++|.+. ...+..+.+++.|+.+++..+.+ ..+....+..+. .
T Consensus 186 L~l~~n~l~~--~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~ 262 (606)
T 3vq2_A 186 LDMSLNPIDF--IQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVT 262 (606)
T ss_dssp EECTTCCCCE--ECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSE
T ss_pred eeccCCCcce--eCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhcc
Confidence 9999999886 555566555 8999999999886 45566788899999888765433 223333344433 3
Q ss_pred CcEEEc-cCCcccccCcccccCCCCCCEEEccCCCCCccChhhhcCCCCCcEEEccCCCCCCchhhhcCCCCCcEEECCC
Q psy5670 393 LHTLIM-SNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGD 471 (1269)
Q Consensus 393 L~~L~L-s~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~ 471 (1269)
++.+++ ..+.+.+..+. +..+++|+.|++++|.+..+. .+..+++|++|++++|.+..+|. + .+++|++|++++
T Consensus 263 l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~l~--~l~~~~~L~~L~l~~n~l~~lp~-~-~l~~L~~L~l~~ 337 (606)
T 3vq2_A 263 IDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKYLE--DVPKHFKWQSLSIIRCQLKQFPT-L-DLPFLKSLTLTM 337 (606)
T ss_dssp EEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCCCC--CCCTTCCCSEEEEESCCCSSCCC-C-CCSSCCEEEEES
T ss_pred Hhheeccccccccccccc-cccCCCCCEEEecCccchhhh--hccccccCCEEEcccccCccccc-C-CCCccceeeccC
Confidence 556777 66777777766 889999999999999998876 78899999999999999999994 5 899999999999
Q ss_pred CCCCccChhhhhccccCCeeeccCCcCCCCC--hhhhcCCCCCCEEEcCCCccccccccccCCCCCccEEEccccccccc
Q psy5670 472 NLITEINNLSLNSLHQLAGLRLTENNISNIS--KGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDI 549 (1269)
Q Consensus 472 n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~i~--~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~l 549 (1269)
|...+.. .+..+++|+.|++++|.+..++ +..+..+++|++|++++|.+++++ ..|..+++|+.|++++|.+..+
T Consensus 338 n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~l~~L~~L~l~~n~l~~~ 414 (606)
T 3vq2_A 338 NKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS-ANFMGLEELQHLDFQHSTLKRV 414 (606)
T ss_dssp CSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEEC-CCCTTCTTCCEEECTTSEEEST
T ss_pred CcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccch-hhccCCCCCCeeECCCCccCCc
Confidence 9655433 5678999999999999997663 456899999999999999998876 7888999999999999999987
Q ss_pred C--CcCCCCCCCcEEEccCCcCcccccccc--CCCccEEECCCCCccc--ccccccccccccccEEEcCCCccccccCCc
Q psy5670 550 G--GLFPKLPNLVWLNISENLLEWFDYALI--PADLQWLDIHGNQISE--LGNYFEIESQLRLTYFDASSNKLTELTGNA 623 (1269)
Q Consensus 550 ~--~~~~~l~~L~~L~Ls~n~l~~~~~~~l--p~~L~~L~Ls~n~l~~--~~~~~~l~~~~~L~~LdLs~N~l~~~~~~~ 623 (1269)
+ ..+..+++|+.|++++|.+.......+ .++|++|++++|.+++ ++. .+..+++|+.|++++|+++++.+..
T Consensus 415 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~ 492 (606)
T 3vq2_A 415 TEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSN--VFANTTNLTFLDLSKCQLEQISWGV 492 (606)
T ss_dssp TTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECS--CCTTCTTCCEEECTTSCCCEECTTT
T ss_pred cChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHH--hhccCCCCCEEECCCCcCCccChhh
Confidence 5 478899999999999999886543322 3589999999999986 333 4567889999999999999988765
Q ss_pred cc--CCccEEEccCcccccccCCccCCCCCccEEEcCCCCcccccccccccccCCCCCCCCceEecCCccccccCChhHH
Q psy5670 624 IP--HSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHKNIPDFYIGENPFQCDCNMQWLQ 701 (1269)
Q Consensus 624 ~~--~~L~~L~Ls~N~i~~~~~~~f~~~~~L~~LdLs~N~l~~l~~~~~~~~~~~~~~~l~~l~l~~Np~~c~c~~~~l~ 701 (1269)
+. ++|++|+|++|+++++.|..|..+++|+.|+|++|+|+.++.. +. .++ ++++.+++++||+.|+|.+.|+.
T Consensus 493 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~-~~--~l~--~~L~~l~l~~N~~~c~c~~~~~~ 567 (606)
T 3vq2_A 493 FDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGI-LQ--HFP--KSLAFFNLTNNSVACICEHQKFL 567 (606)
T ss_dssp TTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESC-GG--GSC--TTCCEEECCSCCCCCSSTTHHHH
T ss_pred hcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHh-Hh--hhc--ccCcEEEccCCCcccCCccHHHH
Confidence 54 6899999999999999999999999999999999999988875 21 111 25889999999999999999988
Q ss_pred hhccccccCCCcccccCcccccccc
Q psy5670 702 SYSVNKERNKPNLVDLDTVTCKLLY 726 (1269)
Q Consensus 702 ~~~~~~~~~~~~~~~l~~~~c~~~~ 726 (1269)
.+-. .....+.+.+.+.|..+.
T Consensus 568 ~~l~---~~~~~~~~~~~~~C~~p~ 589 (606)
T 3vq2_A 568 QWVK---EQKQFLVNVEQMTCATPV 589 (606)
T ss_dssp TTTT---TSSSSBSSGGGCCCC---
T ss_pred HHHH---cCcccccCCccceeCCCh
Confidence 7643 112234455667786543
No 10
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=2.3e-47 Score=484.88 Aligned_cols=563 Identities=21% Similarity=0.238 Sum_probs=352.6
Q ss_pred EEEccCCCCCCCCcccccCCCCCcEEEeeCCcccccCcccccCCCCCCEEECcCCCCCccccCcccccCCCCccEEEcCC
Q psy5670 273 VLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAY 352 (1269)
Q Consensus 273 ~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~ 352 (1269)
..+.++-+++.+|.++ .+++++|+|++|.++++++..|.++++|++|+|++|.++. +.+.+|.++++|++|+|++
T Consensus 35 ~~~c~~~~l~~vP~~l---p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~--i~~~~f~~L~~L~~L~Ls~ 109 (635)
T 4g8a_A 35 TYQCMELNFYKIPDNL---PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT--IEDGAYQSLSHLSTLILTG 109 (635)
T ss_dssp EEECTTSCCSSCCSSS---CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE--ECTTTTTTCTTCCEEECTT
T ss_pred EEECCCCCcCccCCCC---CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCC--cChhHhcCCCCCCEEEccC
Confidence 3444444566666543 3456666666666666666666666667777776666665 4555666666677777776
Q ss_pred CCCcccCchhhcCCCCCcEEEccCCcccccccccccCCCCCcEEEccCCcccccC-cccccCCCCCCEEEccCCCCCccC
Q psy5670 353 NKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIE-SNSLDSLTALSVLSLDNNELEYIE 431 (1269)
Q Consensus 353 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~i~~~~ 431 (1269)
|+++.+++..|.++++|++|++++|.++.+++..|+++++|++|++++|.+..+. +..+..+++|++|++++|++.++.
T Consensus 110 N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 189 (635)
T 4g8a_A 110 NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 189 (635)
T ss_dssp CCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC
T ss_pred CcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccc
Confidence 6666666666666777777777777776666666666777777777777666542 445566667777777777776666
Q ss_pred hhhhcCCCC----CcEEEccCCCCCCchhhhcCCCCCcEEECCCCCCCc-cChhhhhccccCCeeeccCCcC------CC
Q psy5670 432 ENALKNSTS----LQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITE-INNLSLNSLHQLAGLRLTENNI------SN 500 (1269)
Q Consensus 432 ~~~~~~l~~----L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls~n~l------~~ 500 (1269)
+..+..+.+ +..++++.|.+..++........+..+++.+|.... +....+..+..++...+..+.. ..
T Consensus 190 ~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~ 269 (635)
T 4g8a_A 190 CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEK 269 (635)
T ss_dssp GGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSC
T ss_pred cccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccccccccccc
Confidence 555544332 235666666666555444444445566666554332 2223344444444444322211 11
Q ss_pred CChhhhcCCCCCCEEEcCCCccccccccccCCCCCccEEEcccccccccCCcCCCCCCCcEEEccCCcCccccccccCCC
Q psy5670 501 ISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYALIPAD 580 (1269)
Q Consensus 501 i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~lp~~ 580 (1269)
.....+..+..+....+..+.... ....+...+..+.+++.+++.++.+...........
T Consensus 270 ~~~~~~~~~~~l~~~~l~~~~~~~--------------------~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 329 (635)
T 4g8a_A 270 FDKSALEGLCNLTIEEFRLAYLDY--------------------YLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFG 329 (635)
T ss_dssp CCTTTTGGGGGSEEEEEEEECCCS--------------------CEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCC
T ss_pred ccccccccccchhhhhhhhhhhcc--------------------cccchhhhhhhhcccccccccccccccccccccchh
Confidence 111222223333333322221110 011122233334445555555554443332233334
Q ss_pred ccEEECCCCCcccccccccccccccccEEEcCCCccccccCCcccCCccEEEccCcccccc--cCCccCCCCCccEEEcC
Q psy5670 581 LQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPHSVENLFLTNNLISKV--QPYTFFMKPNLTRVDLV 658 (1269)
Q Consensus 581 L~~L~Ls~n~l~~~~~~~~l~~~~~L~~LdLs~N~l~~~~~~~~~~~L~~L~Ls~N~i~~~--~~~~f~~~~~L~~LdLs 658 (1269)
++.|++++|.+..+.. ..+..|+.++++.|.+.......-.++|+.|++++|.+... .+..+..+.+|+.++++
T Consensus 330 L~~L~l~~~~~~~~~~----~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~ 405 (635)
T 4g8a_A 330 WQHLELVNCKFGQFPT----LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLS 405 (635)
T ss_dssp CSEEEEESCEESSCCC----CBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECC
T ss_pred hhhhhcccccccCcCc----ccchhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhcc
Confidence 5555555555444332 12344555556555555443333334566666666655432 23334455666666666
Q ss_pred CCCcccccccccccccCCCCCCCCceEecCCccccccCChhHHhhccccccCCCcccccCccccccccccCCCccccccc
Q psy5670 659 GNRLKNINQTALRISPLPSHKNIPDFYIGENPFQCDCNMQWLQSYSVNKERNKPNLVDLDTVTCKLLYNRANPAILLKEA 738 (1269)
Q Consensus 659 ~N~l~~l~~~~~~~~~~~~~~~l~~l~l~~Np~~c~c~~~~l~~~~~~~~~~~~~~~~l~~~~c~~~~~~~~~~~~l~~~ 738 (1269)
.|.+..+.... ....++..+++.+|.... .
T Consensus 406 ~~~~~~~~~~~------~~l~~L~~l~l~~~~~~~--------------------------------------------~ 435 (635)
T 4g8a_A 406 FNGVITMSSNF------LGLEQLEHLDFQHSNLKQ--------------------------------------------M 435 (635)
T ss_dssp SCSEEEECSCC------TTCTTCCEEECTTSEEES--------------------------------------------T
T ss_pred ccccccccccc------cccccccchhhhhccccc--------------------------------------------c
Confidence 66655433211 122223333322211000 0
Q ss_pred CCCccccccccCcccccccccCCCCcccCCCCCCceecCCCCCcceeeecCCCCccccCCCCCCCCCcEEEecCCCCCCc
Q psy5670 739 HSNQFLCEYETNCAPLCHCCDFDACDCEMTCPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVV 818 (1269)
Q Consensus 739 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cp~~C~c~~~~~~~~~~v~c~~~~l~~~~p~~~p~~~~~l~l~~n~i~~l 818 (1269)
.+. ..+.. ...++.++++.|.+..+
T Consensus 436 ------------------------------~~~-------------------~~~~~------l~~l~~l~ls~n~l~~~ 460 (635)
T 4g8a_A 436 ------------------------------SEF-------------------SVFLS------LRNLIYLDISHTHTRVA 460 (635)
T ss_dssp ------------------------------TSS-------------------CTTTT------CTTCCEEECTTSCCEEC
T ss_pred ------------------------------ccc-------------------ccccc------ccccccccccccccccc
Confidence 000 00000 12357889999999999
Q ss_pred CCCcCCCCCCccEEEccCcC-ccccccccccCCCCCCEEeCCCCCCcccCcccccCCcccCeeecccccCcccChhhhhc
Q psy5670 819 GSHSFIGRKKLQILFLNSSH-VETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLS 897 (1269)
Q Consensus 819 ~~~~f~~~~~L~~L~l~~n~-i~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~ 897 (1269)
.+..|.++++|+.|++++|+ +..+.+..|..+++|++|+|++|+|+++++.+|.++++|++|+|++|+|+++++..|.+
T Consensus 461 ~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~ 540 (635)
T 4g8a_A 461 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC 540 (635)
T ss_dssp CTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTT
T ss_pred cccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhC
Confidence 99999999999999999997 55678899999999999999999999999999999999999999999999999999999
Q ss_pred CcccceEeccCccceeeecc-c-cc-CCccEEEeeCCcccccCCcHHHHHHHHHhccCCcCccCcceeccCCccce
Q psy5670 898 LTHLKVLQLDHNRITSFAVW-H-LS-SQIQSITLTSNPWSCDCDFTEKFRDYLQRSRSSVHDISQIRCMTGSEVGF 970 (1269)
Q Consensus 898 l~~L~~L~L~~N~l~~~~~~-~-~~-~~l~~l~l~~Np~~C~C~~~~~~~~w~~~~~~~i~~~~~~~C~~p~~~~~ 970 (1269)
+++|++|+|++|+|+++++. + .+ ++|+.|+|++|||.|||++ .||++|+++....+.+..+++|++|+..+|
T Consensus 541 l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~-~~~~~wl~~~~~~~~~~~~~~C~~P~~~~g 615 (635)
T 4g8a_A 541 LNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH-QSFLQWIKDQRQLLVEVERMECATPSDKQG 615 (635)
T ss_dssp CTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGG-HHHHHHHHHTTTTBSCGGGCBBCSSTTTTT
T ss_pred CCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCc-HHHHHHHHhCCCccCCCCCceeCCchHHCC
Confidence 99999999999999999998 6 44 7899999999999999996 799999998877888888999999999876
No 11
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2.9e-47 Score=496.49 Aligned_cols=534 Identities=23% Similarity=0.290 Sum_probs=340.4
Q ss_pred EEEEeeecccCcccCCccccccccceeEEEEEeCCceeeccCCCchhccCCcccceeEecccc-CCCCChhhccCCccCc
Q psy5670 61 ALVCKLRTINSEIENTNFSIIQAQYTVRLRIECGDMLFFQSSLSPGSFQTLIDLKDLSVEFCK-IGNLSAGSFRGLRKLK 139 (1269)
Q Consensus 61 ~~~c~~~~i~~~~~~~~~s~~~~~~~~~L~L~~~~~~~~~~~i~~~~f~~l~~L~~L~L~~~~-i~~i~~~~f~~l~~L~ 139 (1269)
.+.|...+++.+| . .|.++++|+|++|. .+.+.+.+|.++++|++|+|++|. +..+++++|.++++|+
T Consensus 8 ~~dcs~~~L~~vP------~-lp~~l~~LdLs~N~----i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~ 76 (844)
T 3j0a_A 8 IAFYRFCNLTQVP------Q-VLNTTERLLLSFNY----IRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLR 76 (844)
T ss_dssp EEEESCCCSSCCC------S-SCTTCCEEEEESCC----CCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCC
T ss_pred EEEccCCCCCCCC------C-CCCCcCEEECCCCc----CCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCC
Confidence 7889888998887 2 46778888888887 456666677888888888887773 3455555555555555
Q ss_pred eeecccccCCCCccceeccchhhhhcCCCCCEEEccCCCCcc-CC-cccCCCCCCCcEEECCCCCCCCCCcc-ccCCCCc
Q psy5670 140 TLTLRTHNTDWSTMSLDISHNVFTDELQSLESLDLSMNSIWT-LP-DAIFCPLQSLSYLNLTQNKLSNVATF-SFSNYDT 216 (1269)
Q Consensus 140 ~L~L~~~~~~~~~~~~~i~~~~f~~~l~~L~~L~Ls~n~l~~-l~-~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~~~~ 216 (1269)
+|+|++|.+ ..+.|..| .++++|++|+|++|.+.+ ++ ...|.++++|++|+|++|.+.+.... .|
T Consensus 77 ~L~Ls~N~l------~~~~p~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~----- 144 (844)
T 3j0a_A 77 ILDLGSSKI------YFLHPDAF-QGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSF----- 144 (844)
T ss_dssp EEECTTCCC------CEECTTSS-CSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGG-----
T ss_pred EEECCCCcC------cccCHhHc-cCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhH-----
Confidence 555543322 12334445 555555555555555543 11 12344555555555555554443221 12
Q ss_pred ccCCCcccEEEcCCCCCCccCcccCCCC--CCCCEEEccCCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCC
Q psy5670 217 ARCGINLRVLDLSNNSFDSLPAEGFSRL--SRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRD 294 (1269)
Q Consensus 217 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~ 294 (1269)
..+++|++|+|++|.++.+.+..+..+ ++|+.|++++|.+....+..+..+++ .|.. ..
T Consensus 145 -~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~-----------------~~~~-~~ 205 (844)
T 3j0a_A 145 -GKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMN-----------------PFRN-MV 205 (844)
T ss_dssp -GTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSC-----------------TTTT-CC
T ss_pred -hhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCC-----------------cccc-Cc
Confidence 223445555555554444444444433 44444455444444433333333222 0000 12
Q ss_pred CcEEEeeCCcccccCcccccC---CCCCCEEECcCC---------CCCccccCcccccCC--CCccEEEcCCCCCcccCc
Q psy5670 295 LKEVYLQNNSINVLAPGIFNV---LTQLIVLDLSNN---------ELTEEWVNAATFSGL--HRLVVLNIAYNKMNKLDS 360 (1269)
Q Consensus 295 L~~L~L~~n~l~~~~~~~~~~---l~~L~~L~L~~n---------~l~~~~~~~~~~~~l--~~L~~L~Ls~n~l~~~~~ 360 (1269)
|+.|++++|.+++..+..+.. .++++.|.++.+ .+.. .....|.++ ++|+.|++++|.+..+.+
T Consensus 206 L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~--~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~ 283 (844)
T 3j0a_A 206 LEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKD--PDQNTFAGLARSSVRHLDLSHGFVFSLNS 283 (844)
T ss_dssp BSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTT--GGGTTTTTTTTSCCCEEECTTCCCCEECS
T ss_pred eeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCC--CChhhhhccccCCccEEECCCCcccccCh
Confidence 555555555444333333222 134555554422 2222 223344444 678889998888888888
Q ss_pred hhhcCCCCCcEEEccCCcccccccccccCCCCCcEEEccCCcccccCcccccCCCCCCEEEccCCCCCccChhhhcCCCC
Q psy5670 361 SIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTS 440 (1269)
Q Consensus 361 ~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 440 (1269)
..|..+++|+.|++++|.++.+.+..|..+++|+.|++++|.++++.+..|.++++|+.|++++|.+..+.+..|.++++
T Consensus 284 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~ 363 (844)
T 3j0a_A 284 RVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEK 363 (844)
T ss_dssp CCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCC
T ss_pred hhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCC
Confidence 88888889999999999888888888888889999999999888888888888899999999999888888888888899
Q ss_pred CcEEEccCCCCCCchhhhcCCCCCcEEECCCCCCCccChhhhhccccCCeeeccCCcCCCCChh-hhcCCCCCCEEEcCC
Q psy5670 441 LQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKG-VFEKLSVLTILNLAS 519 (1269)
Q Consensus 441 L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~-~f~~l~~L~~L~Ls~ 519 (1269)
|+.|++++|.++.++. +++|+.|++++|+++.++.. ..+++.|++++|.+..++.. .+.++++|+.|+|++
T Consensus 364 L~~L~Ls~N~l~~i~~----~~~L~~L~l~~N~l~~l~~~----~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~ 435 (844)
T 3j0a_A 364 LQTLDLRDNALTTIHF----IPSIPDIFLSGNKLVTLPKI----NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQ 435 (844)
T ss_dssp CCEEEEETCCSCCCSS----CCSCSEEEEESCCCCCCCCC----CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEES
T ss_pred CCEEECCCCCCCcccC----CCCcchhccCCCCccccccc----ccccceeecccCccccCchhhhhhcCCccceeeCCC
Confidence 9999999998887654 67889999999988876542 46788999999999776542 356889999999999
Q ss_pred Ccccccccc-ccCCCCCccEEEcccccccccC------CcCCCCCCCcEEEccCCcCccccccccCCCccEEECCCCCcc
Q psy5670 520 NKIQKVEAG-TFDNNSNLVAIRLDGNYLTDIG------GLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQIS 592 (1269)
Q Consensus 520 n~i~~~~~~-~~~~~~~L~~L~L~~n~l~~l~------~~~~~l~~L~~L~Ls~n~l~~~~~~~lp~~L~~L~Ls~n~l~ 592 (1269)
|+++++... .+..+++|+.|++++|.++.++ ..|.++++|+.|+
T Consensus 436 N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~----------------------------- 486 (844)
T 3j0a_A 436 NRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLY----------------------------- 486 (844)
T ss_dssp CCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCC-----------------------------
T ss_pred CcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEE-----------------------------
Confidence 999876543 4566889999999999987543 2233344444444
Q ss_pred cccccccccccccccEEEcCCCccccccCCccc--CCccEEEccCcccccccCCccCCCCCccEEEcCCCCccccccccc
Q psy5670 593 ELGNYFEIESQLRLTYFDASSNKLTELTGNAIP--HSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTAL 670 (1269)
Q Consensus 593 ~~~~~~~l~~~~~L~~LdLs~N~l~~~~~~~~~--~~L~~L~Ls~N~i~~~~~~~f~~~~~L~~LdLs~N~l~~l~~~~~ 670 (1269)
|++|+++++++..+. ++|+.|+|++|+++++.+..+. ++|+.|||++|+|+++++..+
T Consensus 487 ------------------Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~ 546 (844)
T 3j0a_A 487 ------------------LNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF 546 (844)
T ss_dssp ------------------CCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC
T ss_pred ------------------CCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHh
Confidence 444444433333222 3455555555555555444443 556666666666666555433
Q ss_pred ccccCCCCCCCCceEecCCccccccCChhHHhh
Q psy5670 671 RISPLPSHKNIPDFYIGENPFQCDCNMQWLQSY 703 (1269)
Q Consensus 671 ~~~~~~~~~~l~~l~l~~Np~~c~c~~~~l~~~ 703 (1269)
.++..+++++|||.|+|.+.|+..+
T Consensus 547 --------~~L~~l~l~~Np~~C~c~~~~f~~~ 571 (844)
T 3j0a_A 547 --------VSLSVLDITHNKFICECELSTFINW 571 (844)
T ss_dssp --------SSCCEEEEEEECCCCSSSCCSHHHH
T ss_pred --------CCcCEEEecCCCcccccccHHHHHH
Confidence 2466788999999999999988765
No 12
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.2e-46 Score=467.69 Aligned_cols=537 Identities=22% Similarity=0.271 Sum_probs=336.7
Q ss_pred EEEccCCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCCcccccCcccccCCCCCCEEECcCCC
Q psy5670 249 ELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNE 328 (1269)
Q Consensus 249 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 328 (1269)
.++.++..++.++. .+ .++++.|++++|+++.+++..|..+++|++|++++|.++++.+..|.++++|++|++++|.
T Consensus 11 ~~~c~~~~l~~ip~-~l--~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~ 87 (570)
T 2z63_A 11 TYQCMELNFYKIPD-NL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87 (570)
T ss_dssp EEECCSSCCSSCCS-SS--CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred EEEeCCCCccccCC-Cc--cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCc
Confidence 34444444555443 12 1356666666666666665556666666666666666666655566666666666666666
Q ss_pred CCccccCcccccCCCCccEEEcCCCCCcccCchhhcCCCCCcEEEccCCcccccc-cccccCCCCCcEEEccCCcccccC
Q psy5670 329 LTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIH-RNTFASLSNLHTLIMSNNKLKRIE 407 (1269)
Q Consensus 329 l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~-~~~f~~l~~L~~L~Ls~n~l~~~~ 407 (1269)
+.. +.+..|.++++|++|++++|.+..++...++.+++|++|++++|.++.+. +..|.++++|+.|++++|+++++.
T Consensus 88 l~~--~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~ 165 (570)
T 2z63_A 88 IQS--LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165 (570)
T ss_dssp CCE--ECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEEC
T ss_pred CCc--cCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceec
Confidence 554 33455666666666666666666555544556666666666666655432 344555666666666666665555
Q ss_pred cccccCCCCC----CEEEccCCCCCccChhhhcCCCCCcEEEccCCCCC--CchhhhcCCCCCcEEECCCCCCCccChhh
Q psy5670 408 SNSLDSLTAL----SVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLT--EIPKVLRNLHSLKTLDLGDNLITEINNLS 481 (1269)
Q Consensus 408 ~~~~~~l~~L----~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~--~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~ 481 (1269)
+..+..+++| +.|++++|.+.++.+..+... +|+.|++++|... .++..+..++.++.+.+....+...
T Consensus 166 ~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~---- 240 (570)
T 2z63_A 166 CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE---- 240 (570)
T ss_dssp GGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCC----
T ss_pred HHHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCc----
Confidence 5555555555 556666666655555555443 4556655555322 3344444455554444322111100
Q ss_pred hhccccCCeeeccCCcCCCCChhhhcCCCC--CCEEEcCCC-ccccccccccCCCCCccEEEcccccccccCCcCCCCCC
Q psy5670 482 LNSLHQLAGLRLTENNISNISKGVFEKLSV--LTILNLASN-KIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPN 558 (1269)
Q Consensus 482 ~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~--L~~L~Ls~n-~i~~~~~~~~~~~~~L~~L~L~~n~l~~l~~~~~~l~~ 558 (1269)
..+..++...|.++.+ ++.++++++ .+.+..+..|..+++|+.|++++|.++.+|..+..+ +
T Consensus 241 --------------~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~ 305 (570)
T 2z63_A 241 --------------GNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-G 305 (570)
T ss_dssp --------------SSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-C
T ss_pred --------------hhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccC-C
Confidence 0112222233333332 455666665 555666666777777777777777777777666666 7
Q ss_pred CcEEEccCCcCccccccccCCCccEEECCCCCcccccccccccccccccEEEcCCCccccccCCcccCCccEEEccCccc
Q psy5670 559 LVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPHSVENLFLTNNLI 638 (1269)
Q Consensus 559 L~~L~Ls~n~l~~~~~~~lp~~L~~L~Ls~n~l~~~~~~~~l~~~~~L~~LdLs~N~l~~~~~~~~~~~L~~L~Ls~N~i 638 (1269)
|+.|++++|.+..++... +++|+.|++++|.+.+..+..-.++|+.|++++|++
T Consensus 306 L~~L~l~~n~~~~l~~~~--------------------------l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l 359 (570)
T 2z63_A 306 WQHLELVNCKFGQFPTLK--------------------------LKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGL 359 (570)
T ss_dssp CSEEEEESCBCSSCCBCB--------------------------CSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCC
T ss_pred ccEEeeccCcccccCccc--------------------------ccccCEEeCcCCccccccccccCCCCCEEeCcCCcc
Confidence 777777777666443321 233444444444443333222233555555555555
Q ss_pred cccc--CCccCCCCCccEEEcCCCCcccccccccccccCCCCCCCCceEecCCccccccCChhHHhhccccccCCCcccc
Q psy5670 639 SKVQ--PYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHKNIPDFYIGENPFQCDCNMQWLQSYSVNKERNKPNLVD 716 (1269)
Q Consensus 639 ~~~~--~~~f~~~~~L~~LdLs~N~l~~l~~~~~~~~~~~~~~~l~~l~l~~Np~~c~c~~~~l~~~~~~~~~~~~~~~~ 716 (1269)
++.. +..+..+++|+.|++++|+++.++.. + ..+.
T Consensus 360 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~-----~~l~------------------------------------- 396 (570)
T 2z63_A 360 SFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-F-----LGLE------------------------------------- 396 (570)
T ss_dssp BEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-E-----ETCT-------------------------------------
T ss_pred CccccccccccccCccCEEECCCCcccccccc-c-----cccC-------------------------------------
Confidence 5443 44566667777777777766654321 1 0111
Q ss_pred cCccccccccccCCCcccccccCCCccccccccCcccccccccCCCCcccCCCCCCceecCCCCCcceeeecCCCCcccc
Q psy5670 717 LDTVTCKLLYNRANPAILLKEAHSNQFLCEYETNCAPLCHCCDFDACDCEMTCPNNCTCYHDVSWEANVIDCSTGGYDNQ 796 (1269)
Q Consensus 717 l~~~~c~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cp~~C~c~~~~~~~~~~v~c~~~~l~~~ 796 (1269)
T Consensus 397 -------------------------------------------------------------------------------- 396 (570)
T 2z63_A 397 -------------------------------------------------------------------------------- 396 (570)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCcEEEecCCCCCCcCC-CcCCCCCCccEEEccCcCccccccccccCCCCCCEEeCCCCCCc-ccCcccccCC
Q psy5670 797 LPPRIPMDATELYLDGNRIPVVGS-HSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLT-EIRGYEFERL 874 (1269)
Q Consensus 797 ~p~~~p~~~~~l~l~~n~i~~l~~-~~f~~~~~L~~L~l~~n~i~~i~~~~f~~l~~L~~L~L~~N~l~-~i~~~~f~~l 874 (1269)
.+++|++++|.+..+.+ ..|.++++|++|++++|.+..+.+..|.++++|++|+|++|.++ ...+..|.++
T Consensus 397 -------~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l 469 (570)
T 2z63_A 397 -------QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL 469 (570)
T ss_dssp -------TCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTC
T ss_pred -------CCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcc
Confidence 12455555555554433 45677888999999999999888889999999999999999987 3455788999
Q ss_pred cccCeeecccccCcccChhhhhcCcccceEeccCccceeeecc-c-ccCCccEEEeeCCcccccCCcHHHHHHHHHhccC
Q psy5670 875 ENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVW-H-LSSQIQSITLTSNPWSCDCDFTEKFRDYLQRSRS 952 (1269)
Q Consensus 875 ~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~-~-~~~~l~~l~l~~Np~~C~C~~~~~~~~w~~~~~~ 952 (1269)
++|++|+|++|+|+.+.+..|..+++|++|+|++|+++++++. + .+++|+.|++++|||.|+|+..+++..|++....
T Consensus 470 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~wl~~~~~ 549 (570)
T 2z63_A 470 RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQ 549 (570)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHHHHHHHHTGG
T ss_pred cCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchHHHHHHHHhccc
Confidence 9999999999999999888999999999999999999999887 6 7899999999999999999975444599998776
Q ss_pred CcCccCcceeccCCcc
Q psy5670 953 SVHDISQIRCMTGSEV 968 (1269)
Q Consensus 953 ~i~~~~~~~C~~p~~~ 968 (1269)
.+.+.. +|.+|.+.
T Consensus 550 ~~~~~~--~C~~~~~~ 563 (570)
T 2z63_A 550 KEQGSA--KCSGSGKP 563 (570)
T ss_dssp GEESCC--BBTTTCCB
T ss_pred cCCCch--hhCCCCCc
Confidence 776655 99987654
No 13
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.3e-44 Score=450.73 Aligned_cols=516 Identities=21% Similarity=0.279 Sum_probs=357.1
Q ss_pred CCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCCcccccCcccccCCCCCCEEECcCCCCCccccCcccccCCCCccEE
Q psy5670 269 NSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVL 348 (1269)
Q Consensus 269 ~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L 348 (1269)
+.....+.+++.++.+|...+ ++|++|++++|.++++.+..|.++++|++|++++|.+.+ +.+..|.++++|++|
T Consensus 5 ~~~~~c~~~~~~l~~ip~~~~---~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~--~~~~~~~~l~~L~~L 79 (549)
T 2z81_A 5 DASGVCDGRSRSFTSIPSGLT---AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINT--IEGDAFYSLGSLEHL 79 (549)
T ss_dssp CTTSEEECTTSCCSSCCSCCC---TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCE--ECTTTTTTCTTCCEE
T ss_pred CCCceEECCCCccccccccCC---CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCc--cChhhccccccCCEE
Confidence 444557888889999998653 789999999999999888888999999999999999887 556778889999999
Q ss_pred EcCCCCCcccCchhhcCCCCCcEEEccCCcccccc-cccccCCCCCcEEEccCCc-ccccCcccccCCCCCCEEEccCCC
Q psy5670 349 NIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIH-RNTFASLSNLHTLIMSNNK-LKRIESNSLDSLTALSVLSLDNNE 426 (1269)
Q Consensus 349 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~-~~~f~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~ 426 (1269)
++++|.+.++++..|+.+++|++|++++|.++.+. +..|.++++|++|++++|. +..+.+..+.++++|++|++++|.
T Consensus 80 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~ 159 (549)
T 2z81_A 80 DLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALS 159 (549)
T ss_dssp ECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred ECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCc
Confidence 99999999888888888999999999999887643 3467888888888888887 555555677888888888888888
Q ss_pred CCccChhhhcCCCCCcEEEccCCCCCCchhhh-cCCCCCcEEECCCCCCCccChhhhhccccCCeeeccCCcCCCCChhh
Q psy5670 427 LEYIEENALKNSTSLQDFHLNGNKLTEIPKVL-RNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGV 505 (1269)
Q Consensus 427 i~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l-~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~ 505 (1269)
+.+..+..++.+++|++|++++|.+..+|..+ ..+++|++|++++|.+++.... +...
T Consensus 160 l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---------------------~~~~ 218 (549)
T 2z81_A 160 LRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFS---------------------PLPV 218 (549)
T ss_dssp CCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCC---------------------CCSS
T ss_pred ccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCcccccccc---------------------ccch
Confidence 88877777888888888888888777776643 4567777777777776654210 0011
Q ss_pred hcCCCCCCEEEcCCCccccccc----cccCCCCCccEEEcccccccccC-------CcCCCCCCCcEEEccCCcCccccc
Q psy5670 506 FEKLSVLTILNLASNKIQKVEA----GTFDNNSNLVAIRLDGNYLTDIG-------GLFPKLPNLVWLNISENLLEWFDY 574 (1269)
Q Consensus 506 f~~l~~L~~L~Ls~n~i~~~~~----~~~~~~~~L~~L~L~~n~l~~l~-------~~~~~l~~L~~L~Ls~n~l~~~~~ 574 (1269)
...+++|+.|++++|.+++..+ ..+..+++|+.+++++|.+..++ ..+..+++|+.|++.++.+.....
T Consensus 219 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~ 298 (549)
T 2z81_A 219 DEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYL 298 (549)
T ss_dssp CCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGG
T ss_pred hhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhh
Confidence 2234445555555554443221 12233455555555555544332 123455666666666665543210
Q ss_pred cccCCCccEEECCCCCcccccccccccccccccEEEcCCCccccccCCcc--cCCccEEEccCcccccccC---CccCCC
Q psy5670 575 ALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAI--PHSVENLFLTNNLISKVQP---YTFFMK 649 (1269)
Q Consensus 575 ~~lp~~L~~L~Ls~n~l~~~~~~~~l~~~~~L~~LdLs~N~l~~~~~~~~--~~~L~~L~Ls~N~i~~~~~---~~f~~~ 649 (1269)
. ..++.. .....+|+.|++++|+++.++...+ .++|++|+|++|++++..| ..+..+
T Consensus 299 ~----------------~~l~~~--~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l 360 (549)
T 2z81_A 299 F----------------YDLSTV--YSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAW 360 (549)
T ss_dssp S----------------CCCCHH--HHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSS
T ss_pred c----------------ccchhh--hhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhcc
Confidence 0 000000 0112345555555555554443221 2456666666666665442 336677
Q ss_pred CCccEEEcCCCCcccccccccccccCCCCCCCCceEecCCccccccCChhHHhhccccccCCCcccccCccccccccccC
Q psy5670 650 PNLTRVDLVGNRLKNINQTALRISPLPSHKNIPDFYIGENPFQCDCNMQWLQSYSVNKERNKPNLVDLDTVTCKLLYNRA 729 (1269)
Q Consensus 650 ~~L~~LdLs~N~l~~l~~~~~~~~~~~~~~~l~~l~l~~Np~~c~c~~~~l~~~~~~~~~~~~~~~~l~~~~c~~~~~~~ 729 (1269)
++|+.|+|++|+++.++...-. +...
T Consensus 361 ~~L~~L~Ls~N~l~~~~~~~~~---~~~l--------------------------------------------------- 386 (549)
T 2z81_A 361 PSLQTLVLSQNHLRSMQKTGEI---LLTL--------------------------------------------------- 386 (549)
T ss_dssp TTCCEEECTTSCCCCHHHHHHH---GGGC---------------------------------------------------
T ss_pred ccCcEEEccCCcccccccchhh---hhcC---------------------------------------------------
Confidence 7888888888877654320000 0000
Q ss_pred CCcccccccCCCccccccccCcccccccccCCCCcccCCCCCCceecCCCCCcceeeecCCCCccccCCCCCCCCCcEEE
Q psy5670 730 NPAILLKEAHSNQFLCEYETNCAPLCHCCDFDACDCEMTCPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELY 809 (1269)
Q Consensus 730 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cp~~C~c~~~~~~~~~~v~c~~~~l~~~~p~~~p~~~~~l~ 809 (1269)
.++++|+
T Consensus 387 -------------------------------------------------------------------------~~L~~L~ 393 (549)
T 2z81_A 387 -------------------------------------------------------------------------KNLTSLD 393 (549)
T ss_dssp -------------------------------------------------------------------------TTCCEEE
T ss_pred -------------------------------------------------------------------------CCCCEEE
Confidence 1235666
Q ss_pred ecCCCCCCcCCCcCCCCCCccEEEccCcCccccccccccCCCCCCEEeCCCCCCcccCcccccCCcccCeeecccccCcc
Q psy5670 810 LDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIY 889 (1269)
Q Consensus 810 l~~n~i~~l~~~~f~~~~~L~~L~l~~n~i~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~ 889 (1269)
+++|+++.++. .+..+++|+.|++++|+|+.++...+ ++|++|+|++|+|+++. .++++|++|+|++|+|+.
T Consensus 394 Ls~N~l~~lp~-~~~~~~~L~~L~Ls~N~l~~l~~~~~---~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~~ 465 (549)
T 2z81_A 394 ISRNTFHPMPD-SCQWPEKMRFLNLSSTGIRVVKTCIP---QTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLKT 465 (549)
T ss_dssp CTTCCCCCCCS-CCCCCTTCCEEECTTSCCSCCCTTSC---TTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSS
T ss_pred CCCCCCccCCh-hhcccccccEEECCCCCcccccchhc---CCceEEECCCCChhhhc----ccCChhcEEECCCCccCc
Confidence 66666666654 45566778888888888777665433 57889999999988764 478899999999999999
Q ss_pred cChhhhhcCcccceEeccCccceeeecc-c-ccCCccEEEeeCCcccccCCcHHHHHHHHHhccCCcCccCcceeccCCc
Q psy5670 890 ISNRTFLSLTHLKVLQLDHNRITSFAVW-H-LSSQIQSITLTSNPWSCDCDFTEKFRDYLQRSRSSVHDISQIRCMTGSE 967 (1269)
Q Consensus 890 i~~~~f~~l~~L~~L~L~~N~l~~~~~~-~-~~~~l~~l~l~~Np~~C~C~~~~~~~~w~~~~~~~i~~~~~~~C~~p~~ 967 (1269)
|+.. ..+++|++|+|++|+|+++++. + .+++|+.|++++|||.|+|+...|+.+|++..... +...++|..|..
T Consensus 466 ip~~--~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~l~~~l~~~~~~--~~~~~~C~~~~~ 541 (549)
T 2z81_A 466 LPDA--SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQK--EQGSAKCSGSGK 541 (549)
T ss_dssp CCCG--GGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHHHHHHHHHHHHCTTT--EESCCBBTTTCC
T ss_pred CCCc--ccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCccHHHHHHHHHhcccc--cCCCCeECCCCc
Confidence 8874 4589999999999999999887 6 78999999999999999999778999999876433 557889998753
No 14
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=3.8e-44 Score=446.53 Aligned_cols=492 Identities=18% Similarity=0.254 Sum_probs=350.4
Q ss_pred CCCCCEEEccCCCCccCCcccCCCCCCCcEEECCCCCCCCCCccccCCCCcccCCCcccEEEcCCCCCCccCcccCCCCC
Q psy5670 166 LQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLS 245 (1269)
Q Consensus 166 l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 245 (1269)
|+.....+.+++.++.+|...+ ++|++|+|++|+++++.+..|.. +++|++|++++|.++.+++.+|.+++
T Consensus 4 C~~~~~c~~~~~~l~~ip~~~~---~~L~~L~Ls~n~l~~~~~~~~~~------l~~L~~L~Ls~n~i~~~~~~~~~~l~ 74 (549)
T 2z81_A 4 CDASGVCDGRSRSFTSIPSGLT---AAMKSLDLSFNKITYIGHGDLRA------CANLQVLILKSSRINTIEGDAFYSLG 74 (549)
T ss_dssp ECTTSEEECTTSCCSSCCSCCC---TTCCEEECCSSCCCEECSSTTSS------CTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred CCCCceEECCCCccccccccCC---CCccEEECcCCccCccChhhhhc------CCcccEEECCCCCcCccChhhccccc
Confidence 3444456778888888887653 68888899888888776665544 67888999999888888888888889
Q ss_pred CCCEEEccCCCCcccchhhhcCCCCCcEEEccCCCCCCCC-cccccCCCCCcEEEeeCCc-ccccCcccccCCCCCCEEE
Q psy5670 246 RLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIP-PELFNQSRDLKEVYLQNNS-INVLAPGIFNVLTQLIVLD 323 (1269)
Q Consensus 246 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~-~~~f~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~ 323 (1269)
+|++|++++|.++++.+..|+++++|++|++++|.++.++ +..|..+++|++|++++|. +..+++..|.++++|++|+
T Consensus 75 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~ 154 (549)
T 2z81_A 75 SLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELE 154 (549)
T ss_dssp TCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEE
T ss_pred cCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeee
Confidence 9999999999888888888888899999999998888653 3467888889999998887 5667667788888889999
Q ss_pred CcCCCCCccccCcccccCCCCccEEEcCCCCCcccCchhhcCCCCCcEEEccCCcccccc---cccccCCCCCcEEEccC
Q psy5670 324 LSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIH---RNTFASLSNLHTLIMSN 400 (1269)
Q Consensus 324 L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~---~~~f~~l~~L~~L~Ls~ 400 (1269)
+++|.+.+ ..+..+..+++|+.|+++.|.+..++...+..+++|++|++++|.++.++ ......+++|+.|++++
T Consensus 155 L~~n~l~~--~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~ 232 (549)
T 2z81_A 155 IKALSLRN--YQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRG 232 (549)
T ss_dssp EEETTCCE--ECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEES
T ss_pred ccCCcccc--cChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccc
Confidence 98888876 44677888888888888888887776666667888888888888887652 22234567888888888
Q ss_pred CcccccCc----ccccCCCCCCEEEccCCCCCccC------hhhhcCCCCCcEEEccCCCCCCc------hhhhcCCCCC
Q psy5670 401 NKLKRIES----NSLDSLTALSVLSLDNNELEYIE------ENALKNSTSLQDFHLNGNKLTEI------PKVLRNLHSL 464 (1269)
Q Consensus 401 n~l~~~~~----~~~~~l~~L~~L~Ls~n~i~~~~------~~~~~~l~~L~~L~Ls~n~l~~l------p~~l~~l~~L 464 (1269)
|.+++..+ ..+..+++|+.+++++|.+.++. ...+..+.+|+.|++.++.+... +..+...++|
T Consensus 233 n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L 312 (549)
T 2z81_A 233 SVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKV 312 (549)
T ss_dssp CEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTC
T ss_pred cccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccc
Confidence 88776433 23456678888888888766542 12345667788888887766543 2223345678
Q ss_pred cEEECCCCCCCccChhhhhccccCCeeeccCCcCCCC-C--hhhhcCCCCCCEEEcCCCccccccc--cccCCCCCccEE
Q psy5670 465 KTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNI-S--KGVFEKLSVLTILNLASNKIQKVEA--GTFDNNSNLVAI 539 (1269)
Q Consensus 465 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~i-~--~~~f~~l~~L~~L~Ls~n~i~~~~~--~~~~~~~~L~~L 539 (1269)
++|++++|.+..++...+..+++|+.|++++|.+... + ...+..+++|++|++++|+++++.. ..+..+++|+.|
T Consensus 313 ~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L 392 (549)
T 2z81_A 313 KRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSL 392 (549)
T ss_dssp CEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEE
T ss_pred eEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEE
Confidence 8888888887776665556778888888888877543 2 1235677788888888888877643 456777888888
Q ss_pred EcccccccccCCcCCCCCCCcEEEccCCcCccccccccCCCccEEECCCCCcccccccccccccccccEEEcCCCccccc
Q psy5670 540 RLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTEL 619 (1269)
Q Consensus 540 ~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~lp~~L~~L~Ls~n~l~~~~~~~~l~~~~~L~~LdLs~N~l~~~ 619 (1269)
++++|+++.+|..+..+++|++|++++|+++.++. .+|++|+.|++++|+++++. ..++
T Consensus 393 ~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~~l~~-~~~~~L~~L~Ls~N~l~~~~-----~~l~--------------- 451 (549)
T 2z81_A 393 DISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKT-CIPQTLEVLDVSNNNLDSFS-----LFLP--------------- 451 (549)
T ss_dssp ECTTCCCCCCCSCCCCCTTCCEEECTTSCCSCCCT-TSCTTCSEEECCSSCCSCCC-----CCCT---------------
T ss_pred ECCCCCCccCChhhcccccccEEECCCCCcccccc-hhcCCceEEECCCCChhhhc-----ccCC---------------
Confidence 88888888777777777778888777777765542 23445555555555555432 1233
Q ss_pred cCCcccCCccEEEccCcccccccCCccCCCCCccEEEcCCCCcccccccccccccCCCCCCCCceEecCCccccccC-Ch
Q psy5670 620 TGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHKNIPDFYIGENPFQCDCN-MQ 698 (1269)
Q Consensus 620 ~~~~~~~~L~~L~Ls~N~i~~~~~~~f~~~~~L~~LdLs~N~l~~l~~~~~~~~~~~~~~~l~~l~l~~Np~~c~c~-~~ 698 (1269)
+|++|+|++|+++.+.+ ...+++|+.|+|++|+|+++++..+. ...+++.+++++|||.|+|. ..
T Consensus 452 -------~L~~L~Ls~N~l~~ip~--~~~l~~L~~L~Ls~N~l~~~~~~~~~-----~l~~L~~L~l~~N~~~~~~~~~~ 517 (549)
T 2z81_A 452 -------RLQELYISRNKLKTLPD--ASLFPVLLVMKISRNQLKSVPDGIFD-----RLTSLQKIWLHTNPWDCSCPRID 517 (549)
T ss_dssp -------TCCEEECCSSCCSSCCC--GGGCTTCCEEECCSSCCCCCCTTGGG-----GCTTCCEEECCSSCBCCCHHHHH
T ss_pred -------hhcEEECCCCccCcCCC--cccCccCCEEecCCCccCCcCHHHHh-----cCcccCEEEecCCCccCCCccHH
Confidence 45555555555554332 23456666777777766666554432 34566777788888999998 46
Q ss_pred hHHhh
Q psy5670 699 WLQSY 703 (1269)
Q Consensus 699 ~l~~~ 703 (1269)
|+..|
T Consensus 518 ~l~~~ 522 (549)
T 2z81_A 518 YLSRW 522 (549)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66544
No 15
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=5.2e-44 Score=453.97 Aligned_cols=572 Identities=20% Similarity=0.260 Sum_probs=378.3
Q ss_pred EEEEeeecccCcccCCccccccccceeEEEEEeCCceeeccCCCchhccCCcccceeEeccccCCCCChhhccCCccCce
Q psy5670 61 ALVCKLRTINSEIENTNFSIIQAQYTVRLRIECGDMLFFQSSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKT 140 (1269)
Q Consensus 61 ~~~c~~~~i~~~~~~~~~s~~~~~~~~~L~L~~~~~~~~~~~i~~~~f~~l~~L~~L~L~~~~i~~i~~~~f~~l~~L~~ 140 (1269)
.+.|..++++.+|. ..|..+++|+|++|. .+.+++.+|+++++|++|+|++|+|+.+++++|.++++|++
T Consensus 35 ~~~c~~~~l~~vP~------~lp~~~~~LdLs~N~----i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~ 104 (635)
T 4g8a_A 35 TYQCMELNFYKIPD------NLPFSTKNLDLSFNP----LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLST 104 (635)
T ss_dssp EEECTTSCCSSCCS------SSCTTCCEEECTTSC----CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCE
T ss_pred EEECCCCCcCccCC------CCCcCCCEEEeeCCC----CCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCE
Confidence 68999999999982 236789999999998 57788888999999999999999998888888888888888
Q ss_pred eecccccCCCCccceeccchhhhhcCCCCCEEEccCCCCccCCcccCCCCCCCcEEECCCCCCCCCCccccCCCCcccCC
Q psy5670 141 LTLRTHNTDWSTMSLDISHNVFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCG 220 (1269)
Q Consensus 141 L~L~~~~~~~~~~~~~i~~~~f~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l 220 (1269)
|+|++|+. ..+++..| .++++|++|+|++|.++.+++..|+++++|++|+|++|++..+....+ ...+
T Consensus 105 L~Ls~N~l------~~l~~~~f-~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~-----~~~l 172 (635)
T 4g8a_A 105 LILTGNPI------QSLALGAF-SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-----FSNL 172 (635)
T ss_dssp EECTTCCC------CEECGGGG-TTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG-----GGGC
T ss_pred EEccCCcC------CCCCHHHh-cCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchh-----hccc
Confidence 88876543 24556667 788888888888888888877777788888888888877765432211 1235
Q ss_pred CcccEEEcCCCCCCccCcccCCCCCCCC----EEEccCCCCcccchhhhcCCCCCcEEEccCCCCC-CCCcccccCCCCC
Q psy5670 221 INLRVLDLSNNSFDSLPAEGFSRLSRLQ----ELYLQGNILTFLADHALDGLNSLTVLNLSVNNLV-NIPPELFNQSRDL 295 (1269)
Q Consensus 221 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~----~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~f~~l~~L 295 (1269)
++|++|++++|.++.+++..|..+.+++ .++++.|.+..+.+..+.. ..++.+++.+|... .+....+..+..+
T Consensus 173 ~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~-~~~~~l~l~~n~~~~~~~~~~~~~l~~l 251 (635)
T 4g8a_A 173 TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLHKLTLRNNFDSLNVMKTCIQGLAGL 251 (635)
T ss_dssp TTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTT-CEEEEEEEESCCSSHHHHHHHHHTTTTC
T ss_pred hhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccc-hhhhhhhhhcccccccccchhhcCCccc
Confidence 6677777777777666655554443332 4555555555554443322 23445555554322 1222333444444
Q ss_pred cEEEeeCCcccccCcccccCCCCCCEEECcCCCCCccccCcccccCCCCccEEEcCCCCCcc---cCchhhcCCCCCcEE
Q psy5670 296 KEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNK---LDSSIFKDLYRLQVL 372 (1269)
Q Consensus 296 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~---~~~~~~~~l~~L~~L 372 (1269)
+...+..+..... ..+.. .....+..+..+....+..+.... .....+..+.+++.+
T Consensus 252 ~~~~l~~~~~~~~------------------~~l~~--~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l 311 (635)
T 4g8a_A 252 EVHRLVLGEFRNE------------------GNLEK--FDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSF 311 (635)
T ss_dssp EEEEEEEECCTTS------------------CCCSC--CCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEE
T ss_pred ccccccccccccc------------------ccccc--ccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccc
Confidence 4444322111100 00000 112223333444444443322211 112234455677777
Q ss_pred EccCCcccccccccccCCCCCcEEEccCCcccccCcccccCCCCCCEEEccCCCCCccChhhhcCCCCCcEEEccCCCCC
Q psy5670 373 HLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLT 452 (1269)
Q Consensus 373 ~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~ 452 (1269)
.+.++.+..+.. +.....|+.|++.+|.+..+... .++.|+.+++..|.+.... ....+++|+.|++++|.+.
T Consensus 312 ~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~---~l~~L~~l~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~ 384 (635)
T 4g8a_A 312 SLVSVTIERVKD--FSYNFGWQHLELVNCKFGQFPTL---KLKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLS 384 (635)
T ss_dssp EEESCEEEECGG--GGSCCCCSEEEEESCEESSCCCC---BCTTCCEEEEESCCSCCBC--CCCBCTTCCEEECCSSCCB
T ss_pred cccccccccccc--cccchhhhhhhcccccccCcCcc---cchhhhhcccccccCCCCc--ccccccccccchhhccccc
Confidence 777776665543 44556777788777777665432 3456777777777665543 2345778888888888775
Q ss_pred C---chhhhcCCCCCcEEECCCCCCCccChhhhhccccCCeeeccCCcC-CCCChhhhcCCCCCCEEEcCCCcccccccc
Q psy5670 453 E---IPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNI-SNISKGVFEKLSVLTILNLASNKIQKVEAG 528 (1269)
Q Consensus 453 ~---lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l-~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~ 528 (1269)
. .+..+..+.+|+.+++..+.+..... .+..+++|+.++++.+.. ...+...|..+++++.++++.|.+.++.+.
T Consensus 385 ~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~-~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~ 463 (635)
T 4g8a_A 385 FKGCCSQSDFGTISLKYLDLSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 463 (635)
T ss_dssp EEEECCHHHHSCSCCCEEECCSCSEEEECS-CCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTT
T ss_pred cccccccchhhhhhhhhhhccccccccccc-cccccccccchhhhhcccccccccccccccccccccccccccccccccc
Confidence 3 34556677888888888887766544 466788888888888877 444556788899999999999999999888
Q ss_pred ccCCCCCccEEEcccccccc--cCCcCCCCCCCcEEEccCCcCccccccccCCCccEEECCCCCcccccccccccccccc
Q psy5670 529 TFDNNSNLVAIRLDGNYLTD--IGGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRL 606 (1269)
Q Consensus 529 ~~~~~~~L~~L~L~~n~l~~--l~~~~~~l~~L~~L~Ls~n~l~~~~~~~lp~~L~~L~Ls~n~l~~~~~~~~l~~~~~L 606 (1269)
.+..+++|+.|++++|.+.. .|..|..+++|+.|++++|+++.++.. .+.+++
T Consensus 464 ~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~-----------------------~f~~l~-- 518 (635)
T 4g8a_A 464 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT-----------------------AFNSLS-- 518 (635)
T ss_dssp TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTT-----------------------TTTTCT--
T ss_pred ccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChH-----------------------HHcCCC--
Confidence 99999999999999987543 467788888887777777766533111 111222
Q ss_pred cEEEcCCCccccccCCcccCCccEEEccCcccccccCCccCCCCCccEEEcCCCCcccccccccccccCCCC-CCCCceE
Q psy5670 607 TYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSH-KNIPDFY 685 (1269)
Q Consensus 607 ~~LdLs~N~l~~~~~~~~~~~L~~L~Ls~N~i~~~~~~~f~~~~~L~~LdLs~N~l~~l~~~~~~~~~~~~~-~~l~~l~ 685 (1269)
+|++|+|++|+|+++.+..|.++++|+.|||++|+|+++++..+. .. ++|+.++
T Consensus 519 --------------------~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~-----~l~~~L~~L~ 573 (635)
T 4g8a_A 519 --------------------SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ-----HFPSSLAFLN 573 (635)
T ss_dssp --------------------TCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTT-----CCCTTCCEEE
T ss_pred --------------------CCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHH-----hhhCcCCEEE
Confidence 455566666666666677788888899999999999888877653 22 4688999
Q ss_pred ecCCccccccCChhHHhhccccccCCCcccccCccccccccccCCCccccccc
Q psy5670 686 IGENPFQCDCNMQWLQSYSVNKERNKPNLVDLDTVTCKLLYNRANPAILLKEA 738 (1269)
Q Consensus 686 l~~Np~~c~c~~~~l~~~~~~~~~~~~~~~~l~~~~c~~~~~~~~~~~~l~~~ 738 (1269)
+++|||.|||++.|+..|-. .....+.+.+.+.|..|.. ..+.++.++
T Consensus 574 L~~Np~~C~C~~~~~~~wl~---~~~~~~~~~~~~~C~~P~~--~~g~~l~~~ 621 (635)
T 4g8a_A 574 LTQNDFACTCEHQSFLQWIK---DQRQLLVEVERMECATPSD--KQGMPVLSL 621 (635)
T ss_dssp CTTCCBCCSGGGHHHHHHHH---HTTTTBSCGGGCBBCSSTT--TTTCBGGGC
T ss_pred eeCCCCcccCCcHHHHHHHH---hCCCccCCCCCceeCCchH--HCCCEeeee
Confidence 99999999999999987643 1223345667789976643 455666655
No 16
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=9.3e-43 Score=436.26 Aligned_cols=491 Identities=23% Similarity=0.291 Sum_probs=320.4
Q ss_pred CCCCEEEccCCCCccCCcccCCCCCCCcEEECCCCCCCCCCccccCCCCcccCCCcccEEEcCCCCCCccCcccCCCCCC
Q psy5670 167 QSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSR 246 (1269)
Q Consensus 167 ~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 246 (1269)
+++++|++++|.++.+++..|..+++|++|+|++|++.++++..|.. +++|++|+|++|.++.+++..|+++++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~------l~~L~~L~L~~n~l~~~~~~~~~~l~~ 101 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS------LSHLSTLILTGNPIQSLALGAFSGLSS 101 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTT------CTTCCEEECTTCCCCEECTTTTTTCTT
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccC------chhCCEEeCcCCcCCccCHhhhcCccc
Confidence 46777777777777777766777777777777777777766555543 567777777777777777777777777
Q ss_pred CCEEEccCCCCcccchhhhcCCCCCcEEEccCCCCCCCC-cccccCCCCCcEEEeeCCcccccCcccccCCCCC----CE
Q psy5670 247 LQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIP-PELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQL----IV 321 (1269)
Q Consensus 247 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~-~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L----~~ 321 (1269)
|++|++++|.++.+.+..|+++++|++|++++|.+..+. +..|.++++|++|++++|.++++.+..++.+++| +.
T Consensus 102 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~ 181 (570)
T 2z63_A 102 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS 181 (570)
T ss_dssp CCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCE
T ss_pred cccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhh
Confidence 777777777777776666777777777777777777642 3456777777777777777777766666666666 67
Q ss_pred EECcCCCCCccccCcccccCCCCccEEEcCCCCCcc-cCchhhcCCCCCcEEEccCC------cccccccccccCCCC--
Q psy5670 322 LDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNK-LDSSIFKDLYRLQVLHLENN------QIESIHRNTFASLSN-- 392 (1269)
Q Consensus 322 L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n------~l~~i~~~~f~~l~~-- 392 (1269)
|++++|.+.. +.+..+... +|+.|++++|.... ..+..+..+..++.+.+... .+..+....|..+++
T Consensus 182 L~l~~n~l~~--~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~ 258 (570)
T 2z63_A 182 LDLSLNPMNF--IQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT 258 (570)
T ss_dssp EECTTCCCCE--ECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSE
T ss_pred cccCCCCcee--cCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccc
Confidence 7777777765 445555544 67777777664321 12234455566655544322 122333333333332
Q ss_pred CcEEEccCC-cccccCcccccCCCCCCEEEccCCCCCccChhhhcCCCCCcEEEccCCCCCCchhhhcCCCCCcEEECCC
Q psy5670 393 LHTLIMSNN-KLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGD 471 (1269)
Q Consensus 393 L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~ 471 (1269)
++.++++++ .+.+..+..+..+++|+.|++++|.+..++. .+..+ +|++|++++|.+..+|. ..+++|++|++++
T Consensus 259 l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~-~~~~~-~L~~L~l~~n~~~~l~~--~~l~~L~~L~l~~ 334 (570)
T 2z63_A 259 IEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD-FSYNF-GWQHLELVNCKFGQFPT--LKLKSLKRLTFTS 334 (570)
T ss_dssp EEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCB-CCSCC-CCSEEEEESCBCSSCCB--CBCSSCCEEEEES
T ss_pred hhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhh-hhccC-CccEEeeccCcccccCc--ccccccCEEeCcC
Confidence 344555555 4555555556666666666666666655432 34445 66666666666666654 3556666666666
Q ss_pred CCCCccChhhhhccccCCeeeccCCcCCCCC--hhhhcCCCCCCEEEcCCCccccccccccCCCCCccEEEccccccccc
Q psy5670 472 NLITEINNLSLNSLHQLAGLRLTENNISNIS--KGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDI 549 (1269)
Q Consensus 472 n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~i~--~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~l 549 (1269)
|.+.+..+. ..+++|+.|++++|.+..+. +..+.++++|++|++++|++.++.+. +..+++|+.|++++|.+..+
T Consensus 335 n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~ 411 (570)
T 2z63_A 335 NKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQM 411 (570)
T ss_dssp CBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESC
T ss_pred Ccccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccc
Confidence 665554432 45566666666666664443 23455666666666666666655544 55666666666666666554
Q ss_pred C--CcCCCCCCCcEEEccCCcCccccccccCCCccEEECCCCCcccccccccccccccccEEEcCCCcccc-ccCCcc--
Q psy5670 550 G--GLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTE-LTGNAI-- 624 (1269)
Q Consensus 550 ~--~~~~~l~~L~~L~Ls~n~l~~~~~~~lp~~L~~L~Ls~n~l~~~~~~~~l~~~~~L~~LdLs~N~l~~-~~~~~~-- 624 (1269)
+ ..+..+++|+.|++++|.+. ...+ ..+..+++|++|++++|++++ ..+..+
T Consensus 412 ~~~~~~~~l~~L~~L~l~~n~l~----------------------~~~~-~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~ 468 (570)
T 2z63_A 412 SEFSVFLSLRNLIYLDISHTHTR----------------------VAFN-GIFNGLSSLEVLKMAGNSFQENFLPDIFTE 468 (570)
T ss_dssp TTSCTTTTCTTCCEEECTTSCCE----------------------ECCT-TTTTTCTTCCEEECTTCEEGGGEECSCCTT
T ss_pred cchhhhhcCCCCCEEeCcCCccc----------------------ccch-hhhhcCCcCcEEECcCCcCccccchhhhhc
Confidence 3 24555555555555555544 3221 123456788888888888862 223333
Q ss_pred cCCccEEEccCcccccccCCccCCCCCccEEEcCCCCcccccccccccccCCCCCCCCceEecCCccccccCChhHH
Q psy5670 625 PHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHKNIPDFYIGENPFQCDCNMQWLQ 701 (1269)
Q Consensus 625 ~~~L~~L~Ls~N~i~~~~~~~f~~~~~L~~LdLs~N~l~~l~~~~~~~~~~~~~~~l~~l~l~~Np~~c~c~~~~l~ 701 (1269)
.++|++|+|++|+++++.|..|..+++|+.|+|++|+++++++..+ ..+++|+.+++++||+.|+|...|+.
T Consensus 469 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~l~~N~~~~~~~~~~~~ 540 (570)
T 2z63_A 469 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIF-----DRLTSLQKIWLHTNPWDCSCPRIDYL 540 (570)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTT-----TTCTTCCEEECCSSCBCCCTTTTHHH
T ss_pred ccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHh-----hcccCCcEEEecCCcccCCCcchHHH
Confidence 3589999999999999999999999999999999999999877654 45678999999999999999975543
No 17
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.3e-42 Score=429.53 Aligned_cols=477 Identities=19% Similarity=0.232 Sum_probs=293.7
Q ss_pred CEEECcCCCCCccccCcccccCCCCccEEEcCCCCCcccCchhhcCCCCCcEEEccCCcccccccccccCCCCCcEEEcc
Q psy5670 320 IVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMS 399 (1269)
Q Consensus 320 ~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls 399 (1269)
++|++++|.++. ++ ..+. ++|+.|++++|.+.++++..|..+++|++|++++|.++.+.+..|.++++|++|+++
T Consensus 3 ~~l~ls~n~l~~--ip-~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 77 (520)
T 2z7x_B 3 FLVDRSKNGLIH--VP-KDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLS 77 (520)
T ss_dssp CEEECTTSCCSS--CC-CSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECC
T ss_pred ceEecCCCCccc--cc-cccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecC
Confidence 356666666654 32 2222 566666666666666665556666666666666666666655556666666666666
Q ss_pred CCcccccCcccccCCCCCCEEEccCCCCCcc-ChhhhcCCCCCcEEEccCCCCCCchhhhcCCCCC--cEEECCCCCC--
Q psy5670 400 NNKLKRIESNSLDSLTALSVLSLDNNELEYI-EENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSL--KTLDLGDNLI-- 474 (1269)
Q Consensus 400 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L--~~L~Ls~n~i-- 474 (1269)
+|+++.+... .+++|++|++++|.+.++ .|..|+++++|++|++++|.++. ..+..+++| ++|++++|.+
T Consensus 78 ~N~l~~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~ 152 (520)
T 2z7x_B 78 HNKLVKISCH---PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYG 152 (520)
T ss_dssp SSCCCEEECC---CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTT
T ss_pred CCceeecCcc---ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeecccccc
Confidence 6666544332 455566666666655553 23455555555555555555543 223444444 5555555555
Q ss_pred CccChhhhhccc-cCCeeeccCCcC-CCCChhhhcCCCCCCEEEcCCCc-------cccccccccCCCCCccEEEccccc
Q psy5670 475 TEINNLSLNSLH-QLAGLRLTENNI-SNISKGVFEKLSVLTILNLASNK-------IQKVEAGTFDNNSNLVAIRLDGNY 545 (1269)
Q Consensus 475 ~~~~~~~~~~l~-~L~~L~Ls~n~l-~~i~~~~f~~l~~L~~L~Ls~n~-------i~~~~~~~~~~~~~L~~L~L~~n~ 545 (1269)
.+..+..+..+. ....+++++|.+ +.++...+..+++|+.|++++|. +.+..+
T Consensus 153 ~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~------------------ 214 (520)
T 2z7x_B 153 EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA------------------ 214 (520)
T ss_dssp SSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH------------------
T ss_pred cccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh------------------
Confidence 444443333332 122334444444 33333334444444444444443 222222
Q ss_pred ccccCCcCCCCCCCcEEEccCCcCcccccccc-----CCCccEEECCCCCcc-cccccc---cccccccccEEEcCCCcc
Q psy5670 546 LTDIGGLFPKLPNLVWLNISENLLEWFDYALI-----PADLQWLDIHGNQIS-ELGNYF---EIESQLRLTYFDASSNKL 616 (1269)
Q Consensus 546 l~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~l-----p~~L~~L~Ls~n~l~-~~~~~~---~l~~~~~L~~LdLs~N~l 616 (1269)
.+..+++|+.|++++|.++......+ ..+|++|++++|+++ .++... ....+.+|+.+++++|.+
T Consensus 215 ------~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~ 288 (520)
T 2z7x_B 215 ------KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF 288 (520)
T ss_dssp ------GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC
T ss_pred ------hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce
Confidence 33444455555555544432111111 124555555555555 333211 014566777777777777
Q ss_pred ccccCCccc-----CCccEEEccCcccccccCCccCCCCCccEEEcCCCCcccccccccccccCCCCCCCCceEecCCcc
Q psy5670 617 TELTGNAIP-----HSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHKNIPDFYIGENPF 691 (1269)
Q Consensus 617 ~~~~~~~~~-----~~L~~L~Ls~N~i~~~~~~~f~~~~~L~~LdLs~N~l~~l~~~~~~~~~~~~~~~l~~l~l~~Np~ 691 (1269)
.++...+. .+|+.|++++|.+.... .+..+++|+.|++++|++++..+..+ ...
T Consensus 289 -~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~-----~~l------------- 347 (520)
T 2z7x_B 289 -GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENC-----GHL------------- 347 (520)
T ss_dssp -CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTC-----CCC-------------
T ss_pred -ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhh-----ccC-------------
Confidence 33322211 35777777777765543 12566777777777777664211110 000
Q ss_pred ccccCChhHHhhccccccCCCcccccCccccccccccCCCcccccccCCCccccccccCcccccccccCCCCcccCCCCC
Q psy5670 692 QCDCNMQWLQSYSVNKERNKPNLVDLDTVTCKLLYNRANPAILLKEAHSNQFLCEYETNCAPLCHCCDFDACDCEMTCPN 771 (1269)
Q Consensus 692 ~c~c~~~~l~~~~~~~~~~~~~~~~l~~~~c~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cp~ 771 (1269)
T Consensus 348 -------------------------------------------------------------------------------- 347 (520)
T 2z7x_B 348 -------------------------------------------------------------------------------- 347 (520)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceecCCCCCcceeeecCCCCccccCCCCCCCCCcEEEecCCCCCCcCC--CcCCCCCCccEEEccCcCccc-ccccccc
Q psy5670 772 NCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGS--HSFIGRKKLQILFLNSSHVET-IHNKTFN 848 (1269)
Q Consensus 772 ~C~c~~~~~~~~~~v~c~~~~l~~~~p~~~p~~~~~l~l~~n~i~~l~~--~~f~~~~~L~~L~l~~n~i~~-i~~~~f~ 848 (1269)
..+++|++++|+++.++. ..|.++++|+.|++++|+++. ++...|.
T Consensus 348 -------------------------------~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~ 396 (520)
T 2z7x_B 348 -------------------------------TELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCS 396 (520)
T ss_dssp -------------------------------SSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCC
T ss_pred -------------------------------CCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhc
Confidence 124667777777776543 457778899999999999998 8888899
Q ss_pred CCCCCCEEeCCCCCCcccCcccccCCcccCeeecccccCcccChhhhhcCcccceEeccCccceeeecc-c-ccCCccEE
Q psy5670 849 GLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVW-H-LSSQIQSI 926 (1269)
Q Consensus 849 ~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~-~-~~~~l~~l 926 (1269)
.+++|+.|+|++|+++...+..+. ++|++|+|++|+|+.++...+ .+++|++|+|++|+|+.+++. + .+++|+.|
T Consensus 397 ~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~-~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L 473 (520)
T 2z7x_B 397 WTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVV-KLEALQELNVASNQLKSVPDGIFDRLTSLQKI 473 (520)
T ss_dssp CCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGG-GCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccchhhh-cCCCCCEEECCCCcCCccCHHHhccCCcccEE
Confidence 999999999999999866554443 789999999999999988777 899999999999999999988 6 78999999
Q ss_pred EeeCCcccccCCcHHHH-HHHHHhccCCcCccCcceeccCCcc
Q psy5670 927 TLTSNPWSCDCDFTEKF-RDYLQRSRSSVHDISQIRCMTGSEV 968 (1269)
Q Consensus 927 ~l~~Np~~C~C~~~~~~-~~w~~~~~~~i~~~~~~~C~~p~~~ 968 (1269)
++++|||.|+|+. .|| +.|+++.... +..+++|..|...
T Consensus 474 ~l~~N~~~c~c~~-~~~~~~~~~~~~~~--~~~~~~C~~p~~~ 513 (520)
T 2z7x_B 474 WLHTNPWDCSCPR-IDYLSRWLNKNSQK--EQGSAKCSGSGKP 513 (520)
T ss_dssp ECCSSCBCCCHHH-HHHHHHHHHHTTTT--EESCCBBTTTCCB
T ss_pred ECcCCCCcccCCc-hHHHHHHHHhcccc--CCCCCCcCCcccc
Confidence 9999999999996 688 9999876433 4578899998643
No 18
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=6.7e-42 Score=423.00 Aligned_cols=462 Identities=20% Similarity=0.233 Sum_probs=280.1
Q ss_pred CEEEccCCCCccCCcccCCCCCCCcEEECCCCCCCCCCccccCCCCcccCCCcccEEEcCCCCCCccCcccCCCCCCCCE
Q psy5670 170 ESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQE 249 (1269)
Q Consensus 170 ~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 249 (1269)
++|++++|.++.+|...+ ++|++|+|++|++.++++..|.. +++|++|+|++|.++.+.+..|+++++|++
T Consensus 3 ~~l~ls~n~l~~ip~~~~---~~L~~L~Ls~n~i~~~~~~~~~~------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 73 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS---QKTTILNISQNYISELWTSDILS------LSKLRILIISHNRIQYLDISVFKFNQELEY 73 (520)
T ss_dssp CEEECTTSCCSSCCCSCC---TTCSEEECCSSCCCCCCHHHHTT------CTTCCEEECCSSCCCEEEGGGGTTCTTCCE
T ss_pred ceEecCCCCccccccccc---ccccEEECCCCcccccChhhccc------cccccEEecCCCccCCcChHHhhcccCCCE
Confidence 356666666666665432 55555555555555544333332 344555555555555544444555555555
Q ss_pred EEccCCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCCcccccCcccccCCCCCCEEECcCCCC
Q psy5670 250 LYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNEL 329 (1269)
Q Consensus 250 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 329 (1269)
|++++|.++.++.. .+++|++|++++|.++.++ .|..|+++++|++|++++|.+
T Consensus 74 L~Ls~N~l~~lp~~---~l~~L~~L~L~~N~l~~~~-----------------------~p~~~~~l~~L~~L~L~~n~l 127 (520)
T 2z7x_B 74 LDLSHNKLVKISCH---PTVNLKHLDLSFNAFDALP-----------------------ICKEFGNMSQLKFLGLSTTHL 127 (520)
T ss_dssp EECCSSCCCEEECC---CCCCCSEEECCSSCCSSCC-----------------------CCGGGGGCTTCCEEEEEESSC
T ss_pred EecCCCceeecCcc---ccCCccEEeccCCcccccc-----------------------chhhhccCCcceEEEecCccc
Confidence 55555555443322 4445555555555444432 233444444444444444444
Q ss_pred CccccCcccccCCCCc--cEEEcCCCCC--cccCchhhcCCC-CCcEEEccCCccc-ccccccccCCCCCcEEEccCCc-
Q psy5670 330 TEEWVNAATFSGLHRL--VVLNIAYNKM--NKLDSSIFKDLY-RLQVLHLENNQIE-SIHRNTFASLSNLHTLIMSNNK- 402 (1269)
Q Consensus 330 ~~~~~~~~~~~~l~~L--~~L~Ls~n~l--~~~~~~~~~~l~-~L~~L~Ls~n~l~-~i~~~~f~~l~~L~~L~Ls~n~- 402 (1269)
.+ ..+..+++| +.|++++|.+ .+..+..+..+. ....+++++|.+. .++...+..+++|+.|++++|.
T Consensus 128 ~~-----~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~ 202 (520)
T 2z7x_B 128 EK-----SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLE 202 (520)
T ss_dssp CG-----GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCS
T ss_pred ch-----hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeecccccccc
Confidence 32 123333333 5555555544 333333333332 1223445555433 3344445566666666666664
Q ss_pred ------ccccCcccccCCCCCCEEEccCCCCCccChhhh---cCCCCCcEEEccCCCCC-Cchhhh-----cCCCCCcEE
Q psy5670 403 ------LKRIESNSLDSLTALSVLSLDNNELEYIEENAL---KNSTSLQDFHLNGNKLT-EIPKVL-----RNLHSLKTL 467 (1269)
Q Consensus 403 ------l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~---~~l~~L~~L~Ls~n~l~-~lp~~l-----~~l~~L~~L 467 (1269)
+.+..+ .+..+++|+.|++++|.+.+.....+ ...++|++|++++|.++ .+|..+ ..+++|+.+
T Consensus 203 ~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l 281 (520)
T 2z7x_B 203 DNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIH 281 (520)
T ss_dssp TTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEE
T ss_pred ccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEec
Confidence 444333 45666677777776666554222111 11356777777777766 666665 667777777
Q ss_pred ECCCCCCCccChhhhhcc---ccCCeeeccCCcCCCCChhhhcCCCCCCEEEcCCCccccccccccCCCCCccEEEcccc
Q psy5670 468 DLGDNLITEINNLSLNSL---HQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGN 544 (1269)
Q Consensus 468 ~Ls~n~i~~~~~~~~~~l---~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~L~~n 544 (1269)
++++|.+ .++...+..+ .+|+.|++++|.+..++. +..+++|++|++++|++++..+..+..+++|+.|++++|
T Consensus 282 ~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N 358 (520)
T 2z7x_B 282 QVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC--PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMN 358 (520)
T ss_dssp EEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCCCC--CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSS
T ss_pred cccccce-ecchhhhhcccccCceeEEEcCCCccccccc--hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCC
Confidence 7777777 4443444443 567777777777755442 256777888888888877766677777777888888877
Q ss_pred ccccc---CCcCCCCCCCcEEEccCCcCcc-ccccccCCCccEEECCCCCcccccccccccccccccEEEcCCCcccccc
Q psy5670 545 YLTDI---GGLFPKLPNLVWLNISENLLEW-FDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELT 620 (1269)
Q Consensus 545 ~l~~l---~~~~~~l~~L~~L~Ls~n~l~~-~~~~~lp~~L~~L~Ls~n~l~~~~~~~~l~~~~~L~~LdLs~N~l~~~~ 620 (1269)
.++++ |..+..+++|+.|++++|.++. ++.. .+..+++|++|++++|++++..
T Consensus 359 ~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~-----------------------~~~~l~~L~~L~Ls~N~l~~~~ 415 (520)
T 2z7x_B 359 QLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKG-----------------------DCSWTKSLLSLNMSSNILTDTI 415 (520)
T ss_dssp CCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGC-----------------------SCCCCTTCCEEECCSSCCCGGG
T ss_pred ccCccccchHHHhhCCCCCEEECCCCcCCcccccc-----------------------hhccCccCCEEECcCCCCCcch
Confidence 77753 3456667777777777776653 2211 1234567888888888887766
Q ss_pred CCcccCCccEEEccCcccccccCCccCCCCCccEEEcCCCCcccccccccccccCCCCCCCCceEecCCccccccCChhH
Q psy5670 621 GNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHKNIPDFYIGENPFQCDCNMQWL 700 (1269)
Q Consensus 621 ~~~~~~~L~~L~Ls~N~i~~~~~~~f~~~~~L~~LdLs~N~l~~l~~~~~~~~~~~~~~~l~~l~l~~Np~~c~c~~~~l 700 (1269)
+..++++|+.|+|++|+++.+. ..+..+++|+.|+|++|+|+.++...+ ...++++++++++||+.|+|.+.|+
T Consensus 416 ~~~l~~~L~~L~Ls~N~l~~ip-~~~~~l~~L~~L~L~~N~l~~l~~~~~-----~~l~~L~~L~l~~N~~~c~c~~~~~ 489 (520)
T 2z7x_B 416 FRCLPPRIKVLDLHSNKIKSIP-KQVVKLEALQELNVASNQLKSVPDGIF-----DRLTSLQKIWLHTNPWDCSCPRIDY 489 (520)
T ss_dssp GGSCCTTCCEEECCSSCCCCCC-GGGGGCTTCCEEECCSSCCCCCCTTTT-----TTCTTCCEEECCSSCBCCCHHHHHH
T ss_pred hhhhcccCCEEECCCCcccccc-hhhhcCCCCCEEECCCCcCCccCHHHh-----ccCCcccEEECcCCCCcccCCchHH
Confidence 6667788999999999999654 445589999999999999998887533 4567899999999999999999998
Q ss_pred -Hhhc
Q psy5670 701 -QSYS 704 (1269)
Q Consensus 701 -~~~~ 704 (1269)
..|-
T Consensus 490 ~~~~~ 494 (520)
T 2z7x_B 490 LSRWL 494 (520)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 6553
No 19
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=2.7e-40 Score=412.07 Aligned_cols=154 Identities=21% Similarity=0.303 Sum_probs=113.5
Q ss_pred cEEEecCCCCCCcCC--CcCCCCCCccEEEccCcCccc-cccccccCCCCCCEEeCCCCCCcccCcccccCC-cccCeee
Q psy5670 806 TELYLDGNRIPVVGS--HSFIGRKKLQILFLNSSHVET-IHNKTFNGLKELIILRLDDNRLTEIRGYEFERL-ENLRELY 881 (1269)
Q Consensus 806 ~~l~l~~n~i~~l~~--~~f~~~~~L~~L~l~~n~i~~-i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l-~~L~~L~ 881 (1269)
++|++++|+++.++. ..|.++++|+.|++++|+++. ++...|.++++|+.|+|++|+++...+ ..+ ++|++|+
T Consensus 380 ~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---~~l~~~L~~L~ 456 (562)
T 3a79_B 380 QTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVF---RCLPPKVKVLD 456 (562)
T ss_dssp CEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGG---SSCCTTCSEEE
T ss_pred CEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchh---hhhcCcCCEEE
Confidence 334444444444332 235556677777777777777 777777788888888888888765433 334 5888888
Q ss_pred cccccCcccChhhhhcCcccceEeccCccceeeecc-c-ccCCccEEEeeCCcccccCCcHHHHH-HHHHhccCCcC---
Q psy5670 882 LQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVW-H-LSSQIQSITLTSNPWSCDCDFTEKFR-DYLQRSRSSVH--- 955 (1269)
Q Consensus 882 L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~-~-~~~~l~~l~l~~Np~~C~C~~~~~~~-~w~~~~~~~i~--- 955 (1269)
|++|+|+.+++..| .+++|++|+|++|+|+.+++. + .+++|+.|++++|||.|+|+. .||. .|++.....+.
T Consensus 457 L~~N~l~~ip~~~~-~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~-~~~~~~~~~~~~~~~~~~~ 534 (562)
T 3a79_B 457 LHNNRIMSIPKDVT-HLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG-IRYLSEWINKHSGVVRNSA 534 (562)
T ss_dssp CCSSCCCCCCTTTT-SSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHHH-HHHHHHHHHHTTTTEECSS
T ss_pred CCCCcCcccChhhc-CCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcch-HHHHHHHHHhcCCcccccc
Confidence 88888888888777 888888888888888888887 6 778899999999999999996 6775 49887665554
Q ss_pred ---ccCcceecc
Q psy5670 956 ---DISQIRCMT 964 (1269)
Q Consensus 956 ---~~~~~~C~~ 964 (1269)
....+.|..
T Consensus 535 ~~~~~~~~~C~~ 546 (562)
T 3a79_B 535 GSVAPDSAKCSG 546 (562)
T ss_dssp SSBCSSSSCBSS
T ss_pred cCCCCCCCccCC
Confidence 334678876
No 20
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.7e-39 Score=404.84 Aligned_cols=463 Identities=19% Similarity=0.178 Sum_probs=273.2
Q ss_pred CCCEEEccCCCCccCCcccCCCCCCCcEEECCCCCCCCCCccccCCCCcccCCCcccEEEcCCCCCCccCcccCCCCCCC
Q psy5670 168 SLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRL 247 (1269)
Q Consensus 168 ~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 247 (1269)
..++++++++.++.+|...+ ++|++|+|++|++.++++..|.. +++|++|+|++|.++.+++..|.++++|
T Consensus 32 ~~~~l~ls~~~L~~ip~~~~---~~L~~L~Ls~N~i~~~~~~~~~~------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 102 (562)
T 3a79_B 32 LESMVDYSNRNLTHVPKDLP---PRTKALSLSQNSISELRMPDISF------LSELRVLRLSHNRIRSLDFHVFLFNQDL 102 (562)
T ss_dssp -CCEEECTTSCCCSCCTTSC---TTCCEEECCSSCCCCCCGGGTTT------CTTCCEEECCSCCCCEECTTTTTTCTTC
T ss_pred CCcEEEcCCCCCccCCCCCC---CCcCEEECCCCCccccChhhhcc------CCCccEEECCCCCCCcCCHHHhCCCCCC
Confidence 34566666666666655432 45555555555555544433332 3455555555555555544445555555
Q ss_pred CEEEccCCCCcccchhhhcCCCCCcEEEccCCCCCCCC-cccccCCCCCcEEEeeCCcccccCcccccCCCCCCEEECcC
Q psy5670 248 QELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIP-PELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSN 326 (1269)
Q Consensus 248 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~-~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 326 (1269)
++|++++|.++.++.. .+++|++|++++|+++.++ +..|.++++|++|++++|.++... +..+++|
T Consensus 103 ~~L~Ls~N~l~~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~---~~~l~~L------- 169 (562)
T 3a79_B 103 EYLDVSHNRLQNISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD---LLPVAHL------- 169 (562)
T ss_dssp CEEECTTSCCCEECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTT---TGGGTTS-------
T ss_pred CEEECCCCcCCccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCc---hhhhhhc-------
Confidence 5555555555444332 4455555555555544443 233444445555555444444321 2222222
Q ss_pred CCCCccccCcccccCCCCccEEEcCCCCC--cccCchhhcCCC-CCcEEEccCCcccc-cccccccCCCCCcEEEccCCc
Q psy5670 327 NELTEEWVNAATFSGLHRLVVLNIAYNKM--NKLDSSIFKDLY-RLQVLHLENNQIES-IHRNTFASLSNLHTLIMSNNK 402 (1269)
Q Consensus 327 n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l--~~~~~~~~~~l~-~L~~L~Ls~n~l~~-i~~~~f~~l~~L~~L~Ls~n~ 402 (1269)
+|+.|++++|.+ .+..+..+..+. ..-.+++++|.+.. +....+..+++|+.|++++|+
T Consensus 170 -----------------~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~ 232 (562)
T 3a79_B 170 -----------------HLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLND 232 (562)
T ss_dssp -----------------CEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCS
T ss_pred -----------------eeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccc
Confidence 225555555444 333333333332 11133444444332 333344555666666666553
Q ss_pred -----ccccCcccccCCCCCCEEEccCCCCCccChh---hhcCCCCCcEEEccCCCCC-Cchhhh-----cCCCCCcEEE
Q psy5670 403 -----LKRIESNSLDSLTALSVLSLDNNELEYIEEN---ALKNSTSLQDFHLNGNKLT-EIPKVL-----RNLHSLKTLD 468 (1269)
Q Consensus 403 -----l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~---~~~~l~~L~~L~Ls~n~l~-~lp~~l-----~~l~~L~~L~ 468 (1269)
+.+. ...+..++.|+.|++.++.+.+.... .....++|++|++++|.++ .+|..+ ..++.|+.++
T Consensus 233 ~~~~~l~~~-~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~ 311 (562)
T 3a79_B 233 ENCQRLMTF-LSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEH 311 (562)
T ss_dssp TTHHHHHHH-HHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEE
T ss_pred cccchHHHH-HHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhh
Confidence 1111 12345556666666665554432110 1112347777777777766 566554 5555566666
Q ss_pred CCCCCCCccChhhhhcc---ccCCeeeccCCcCCCCChhhhcCCCCCCEEEcCCCccccccccccCCCCCccEEEccccc
Q psy5670 469 LGDNLITEINNLSLNSL---HQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNY 545 (1269)
Q Consensus 469 Ls~n~i~~~~~~~~~~l---~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~L~~n~ 545 (1269)
++.+.+ .++...+..+ .+|+.|++++|.+..+.. +..+++|++|++++|++++..+..+..+++|+.|++++|+
T Consensus 312 ~~~~~~-~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 388 (562)
T 3a79_B 312 VKNQVF-LFSKEALYSVFAEMNIKMLSISDTPFIHMVC--PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNG 388 (562)
T ss_dssp EEECCC-SSCHHHHHHHHHTCCCSEEEEESSCCCCCCC--CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSC
T ss_pred ccccee-ecChhhhhhhhccCcceEEEccCCCcccccC--ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCC
Confidence 666665 3433333322 567888888887755441 2567788888888888887777777778888888888888
Q ss_pred ccccC---CcCCCCCCCcEEEccCCcCcc-ccccccCCCccEEECCCCCcccccccccccccccccEEEcCCCccccccC
Q psy5670 546 LTDIG---GLFPKLPNLVWLNISENLLEW-FDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTG 621 (1269)
Q Consensus 546 l~~l~---~~~~~l~~L~~L~Ls~n~l~~-~~~~~lp~~L~~L~Ls~n~l~~~~~~~~l~~~~~L~~LdLs~N~l~~~~~ 621 (1269)
++.++ ..+..+++|+.|++++|+++. ++.. .+..+++|++|++++|++++..+
T Consensus 389 l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~-----------------------~~~~l~~L~~L~l~~n~l~~~~~ 445 (562)
T 3a79_B 389 LKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDR-----------------------TCAWAESILVLNLSSNMLTGSVF 445 (562)
T ss_dssp CCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSC-----------------------CCCCCTTCCEEECCSSCCCGGGG
T ss_pred cCCcccchhhhcCCCCCCEEECCCCcCCCccChh-----------------------hhcCcccCCEEECCCCCCCcchh
Confidence 77654 456777777777777776653 2111 12345678888888888887766
Q ss_pred CcccCCccEEEccCcccccccCCccCCCCCccEEEcCCCCcccccccccccccCCCCCCCCceEecCCccccccCChhHH
Q psy5670 622 NAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHKNIPDFYIGENPFQCDCNMQWLQ 701 (1269)
Q Consensus 622 ~~~~~~L~~L~Ls~N~i~~~~~~~f~~~~~L~~LdLs~N~l~~l~~~~~~~~~~~~~~~l~~l~l~~Np~~c~c~~~~l~ 701 (1269)
..++++|+.|+|++|+++.+.+..+ .+++|+.|+|++|+|+.++...+ ...++++.+++++|||.|+|++.|+.
T Consensus 446 ~~l~~~L~~L~L~~N~l~~ip~~~~-~l~~L~~L~L~~N~l~~l~~~~~-----~~l~~L~~L~l~~N~~~c~c~~~~~~ 519 (562)
T 3a79_B 446 RCLPPKVKVLDLHNNRIMSIPKDVT-HLQALQELNVASNQLKSVPDGVF-----DRLTSLQYIWLHDNPWDCTCPGIRYL 519 (562)
T ss_dssp SSCCTTCSEEECCSSCCCCCCTTTT-SSCCCSEEECCSSCCCCCCTTST-----TTCTTCCCEECCSCCBCCCHHHHHHH
T ss_pred hhhcCcCCEEECCCCcCcccChhhc-CCCCCCEEECCCCCCCCCCHHHH-----hcCCCCCEEEecCCCcCCCcchHHHH
Confidence 6777889999999999997765555 89999999999999999887633 45678899999999999999999884
Q ss_pred h
Q psy5670 702 S 702 (1269)
Q Consensus 702 ~ 702 (1269)
.
T Consensus 520 ~ 520 (562)
T 3a79_B 520 S 520 (562)
T ss_dssp H
T ss_pred H
Confidence 3
No 21
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=4.4e-40 Score=414.39 Aligned_cols=322 Identities=20% Similarity=0.309 Sum_probs=205.5
Q ss_pred CCCCCCEEEccCCCCcccchhhhcCCCCCcEEEccCCC-CCC--CCcccccC------CCCCcEEEeeCCcccccCc-cc
Q psy5670 243 RLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNN-LVN--IPPELFNQ------SRDLKEVYLQNNSINVLAP-GI 312 (1269)
Q Consensus 243 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~--l~~~~f~~------l~~L~~L~L~~n~l~~~~~-~~ 312 (1269)
++++|++|++++|.+.+..|..|.++++|++|++++|+ ++. +|.. +.. +++|++|++++|.++.++. ..
T Consensus 247 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~-~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~ 325 (636)
T 4eco_A 247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDD-WQALADAPVGEKIQIIYIGYNNLKTFPVETS 325 (636)
T ss_dssp GCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHH-HHHHHHSGGGGTCCEEECCSSCCSSCCCHHH
T ss_pred ccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHH-HHhhhccccCCCCCEEECCCCcCCccCchhh
Confidence 55555555555555555555555555555555555555 443 3322 222 2556666666666553332 14
Q ss_pred ccCCCCCCEEECcCCCCCccccCcccccCCCCccEEEcCCCCCcccCchhhcCCCC-CcEEEccCCcccccccccccCC-
Q psy5670 313 FNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYR-LQVLHLENNQIESIHRNTFASL- 390 (1269)
Q Consensus 313 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~-L~~L~Ls~n~l~~i~~~~f~~l- 390 (1269)
++++++|+.|++++|.+.+. + + .+..+++|+.|++++|.+..++. .+..+++ |++|++++|.++.++. .+..+
T Consensus 326 l~~l~~L~~L~L~~N~l~g~-i-p-~~~~l~~L~~L~L~~N~l~~lp~-~l~~l~~~L~~L~Ls~N~l~~lp~-~~~~~~ 400 (636)
T 4eco_A 326 LQKMKKLGMLECLYNQLEGK-L-P-AFGSEIKLASLNLAYNQITEIPA-NFCGFTEQVENLSFAHNKLKYIPN-IFDAKS 400 (636)
T ss_dssp HTTCTTCCEEECCSCCCEEE-C-C-CCEEEEEESEEECCSSEEEECCT-TSEEECTTCCEEECCSSCCSSCCS-CCCTTC
T ss_pred hccCCCCCEEeCcCCcCccc-h-h-hhCCCCCCCEEECCCCccccccH-hhhhhcccCcEEEccCCcCcccch-hhhhcc
Confidence 55666666666666665532 2 2 55555666666666666664433 3555666 6666666666665543 33333
Q ss_pred -CCCcEEEccCCcccccCccccc-------CCCCCCEEEccCCCCCccChhhhcCCCCCcEEEccCCCCCCchhhhcC-C
Q psy5670 391 -SNLHTLIMSNNKLKRIESNSLD-------SLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRN-L 461 (1269)
Q Consensus 391 -~~L~~L~Ls~n~l~~~~~~~~~-------~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~-l 461 (1269)
++|+.|++++|.+.+..+..+. .+++|+.|++++|.+..+++..+..+++|++|++++|.++.+|..... .
T Consensus 401 l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~ 480 (636)
T 4eco_A 401 VSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDE 480 (636)
T ss_dssp SSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEET
T ss_pred cCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccc
Confidence 3677777777777766665555 566777777777777777766677777777888877777777653322 2
Q ss_pred -------CCCcEEECCCCCCCccChhhh-hccccCCeeeccCCcCCCCChhhhcCCCCCCEEEc------CCCccccccc
Q psy5670 462 -------HSLKTLDLGDNLITEINNLSL-NSLHQLAGLRLTENNISNISKGVFEKLSVLTILNL------ASNKIQKVEA 527 (1269)
Q Consensus 462 -------~~L~~L~Ls~n~i~~~~~~~~-~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~L------s~n~i~~~~~ 527 (1269)
++|++|++++|.++.++...+ ..+++|+.|+|++|++..+|.. +..+++|+.|+| ++|++.+..+
T Consensus 481 ~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~-~~~l~~L~~L~Ls~N~~ls~N~l~~~~p 559 (636)
T 4eco_A 481 NENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQ-PLNSSTLKGFGIRNQRDAQGNRTLREWP 559 (636)
T ss_dssp TEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSCCCG-GGGCSSCCEEECCSCBCTTCCBCCCCCC
T ss_pred cccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCCcChh-hhcCCCCCEEECCCCcccccCcccccCh
Confidence 278888888888876554322 3777888888888888766654 567888888888 4566777777
Q ss_pred cccCCCCCccEEEcccccccccCCcCCCCCCCcEEEccCCcCcccc
Q psy5670 528 GTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFD 573 (1269)
Q Consensus 528 ~~~~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~l~~~~ 573 (1269)
..+..+++|+.|++++|.++.+|..+. ++|+.|++++|.+..++
T Consensus 560 ~~l~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~~ 603 (636)
T 4eco_A 560 EGITLCPSLTQLQIGSNDIRKVNEKIT--PNISVLDIKDNPNISID 603 (636)
T ss_dssp TTGGGCSSCCEEECCSSCCCBCCSCCC--TTCCEEECCSCTTCEEE
T ss_pred HHHhcCCCCCEEECCCCcCCccCHhHh--CcCCEEECcCCCCcccc
Confidence 778888888888888888877776544 67777777777776544
No 22
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.4e-38 Score=405.83 Aligned_cols=436 Identities=19% Similarity=0.216 Sum_probs=246.9
Q ss_pred cceeEEEEEeCCceeeccCCCchhccCCcccceeEe-ccccCCCCCh-hhc-----------------------------
Q psy5670 84 QYTVRLRIECGDMLFFQSSLSPGSFQTLIDLKDLSV-EFCKIGNLSA-GSF----------------------------- 132 (1269)
Q Consensus 84 ~~~~~L~L~~~~~~~~~~~i~~~~f~~l~~L~~L~L-~~~~i~~i~~-~~f----------------------------- 132 (1269)
.+|+.|+|+++.+ .+.+|+ +|+++++|++|+| ++|.+....+ ...
T Consensus 323 ~~V~~L~Ls~~~L---~G~ip~-~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~ 398 (876)
T 4ecn_A 323 GRVTGLSLAGFGA---KGRVPD-AIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRL 398 (876)
T ss_dssp SCEEEEECTTTCC---EEEECG-GGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGG
T ss_pred CCEEEEECccCCC---CCcCch-HHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcch
Confidence 5688999999984 456664 8999999999999 7775532211 000
Q ss_pred ---------------------cCCccCceeecccccCCCCccceeccchhhhhcCCCCCEEEccCCCCcc----------
Q psy5670 133 ---------------------RGLRKLKTLTLRTHNTDWSTMSLDISHNVFTDELQSLESLDLSMNSIWT---------- 181 (1269)
Q Consensus 133 ---------------------~~l~~L~~L~L~~~~~~~~~~~~~i~~~~f~~~l~~L~~L~Ls~n~l~~---------- 181 (1269)
.....++.+.+... ...+.-.|..| +++++|++|+|++|.++.
T Consensus 399 ~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~-----~N~L~~IP~~l-~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~ 472 (876)
T 4ecn_A 399 NLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNL-----TNRITFISKAI-QRLTKLQIIYFANSPFTYDNIAVDWEDA 472 (876)
T ss_dssp GSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCC-----SCEEEEECGGG-GGCTTCCEEEEESCCCCGGGBSSSCSCT
T ss_pred hhhHHHHHHhhhCccccccccccccchhhceeccc-----cCcccchhHHH-hcCCCCCEEECcCCcCCCCccccccccc
Confidence 00111111111110 00111135556 677777777777777766
Q ss_pred --------CCccc-CCCCCCCcEEECCCCCCCCCCccccCCCCcccCCCcccEEEcCCCC-CCc--cCcc------cCCC
Q psy5670 182 --------LPDAI-FCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNS-FDS--LPAE------GFSR 243 (1269)
Q Consensus 182 --------l~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~--~~~~------~~~~ 243 (1269)
+|..+ |.++++|++|+|++|++.+..+..+.. +++|+.|+|++|+ ++. +|.. .+..
T Consensus 473 s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~------L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~ 546 (876)
T 4ecn_A 473 NSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD------LPELQSLNIACNRGISAAQLKADWTRLADDEDT 546 (876)
T ss_dssp TSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGG------CSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTT
T ss_pred ccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhC------CCCCCEEECcCCCCcccccchHHHHhhhhcccc
Confidence 56543 226777777777777665554444432 5667777777776 654 3221 2233
Q ss_pred CCCCCEEEccCCCCcccch-hhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCCcccccCcccccCCCC-CCE
Q psy5670 244 LSRLQELYLQGNILTFLAD-HALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQ-LIV 321 (1269)
Q Consensus 244 l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~ 321 (1269)
+++|+.|++++|.++.++. ..|.++++|+.|+|++|+++.+| .|..+++|+.|+|++|.+..++ ..+.++++ |+.
T Consensus 547 l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp--~~~~L~~L~~L~Ls~N~l~~lp-~~l~~l~~~L~~ 623 (876)
T 4ecn_A 547 GPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE--AFGTNVKLTDLKLDYNQIEEIP-EDFCAFTDQVEG 623 (876)
T ss_dssp TTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC--CCCTTSEESEEECCSSCCSCCC-TTSCEECTTCCE
T ss_pred cCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch--hhcCCCcceEEECcCCccccch-HHHhhccccCCE
Confidence 4467777777777664432 25667777777777777666665 4566677777777777666443 34566666 777
Q ss_pred EECcCCCCCccccCcccccCCC--CccEEEcCCCCCcccCchhh---c--CCCCCcEEEccCCcccccccccccCCCCCc
Q psy5670 322 LDLSNNELTEEWVNAATFSGLH--RLVVLNIAYNKMNKLDSSIF---K--DLYRLQVLHLENNQIESIHRNTFASLSNLH 394 (1269)
Q Consensus 322 L~L~~n~l~~~~~~~~~~~~l~--~L~~L~Ls~n~l~~~~~~~~---~--~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~ 394 (1269)
|++++|.+.. + +..+..+. +|+.|++++|.+.+..+... . .+++|+.|++++|.++.++...+..+++|+
T Consensus 624 L~Ls~N~L~~--l-p~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~ 700 (876)
T 4ecn_A 624 LGFSHNKLKY--I-PNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPIS 700 (876)
T ss_dssp EECCSSCCCS--C-CSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCS
T ss_pred EECcCCCCCc--C-chhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCC
Confidence 7777776653 2 33444333 36777777776655433211 1 233666666666666666665555666666
Q ss_pred EEEccCCcccccCcccccCC-------CCCCEEEccCCCCCccChhhhc--CCCCCcEEEccCCCCCCchhhhcCCCCCc
Q psy5670 395 TLIMSNNKLKRIESNSLDSL-------TALSVLSLDNNELEYIEENALK--NSTSLQDFHLNGNKLTEIPKVLRNLHSLK 465 (1269)
Q Consensus 395 ~L~Ls~n~l~~~~~~~~~~l-------~~L~~L~Ls~n~i~~~~~~~~~--~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~ 465 (1269)
.|+|++|++..+....+... ++|+.|+|++|++..++. .+. .+++|+.|+|++|.++.+|..+..+++|+
T Consensus 701 ~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~-~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~ 779 (876)
T 4ecn_A 701 TIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSD-DFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLK 779 (876)
T ss_dssp EEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCG-GGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCC
T ss_pred EEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchH-HhhhccCCCcCEEEeCCCCCCccchhhhcCCCCC
Confidence 66666666665544333322 266666666666664443 333 56666666666666666666666666666
Q ss_pred EEECCC------CCCCccChhhhhccccCCeeeccCCcCCCCChhhhcCCCCCCEEEcCCCccccccccccCCCCCccEE
Q psy5670 466 TLDLGD------NLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAI 539 (1269)
Q Consensus 466 ~L~Ls~------n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L 539 (1269)
.|+|++ |.+.+..+..+..+++|+.|+|++|.++.+|...+ ++|+.|+|++|++..+....+.....+..+
T Consensus 780 ~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~Ip~~l~---~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~ 856 (876)
T 4ecn_A 780 AFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLT---PQLYILDIADNPNISIDVTSVCPYIEAGMY 856 (876)
T ss_dssp EEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCC---SSSCEEECCSCTTCEEECGGGHHHHHTTCC
T ss_pred EEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCCccCHhhc---CCCCEEECCCCCCCccChHHccccccchhe
Confidence 666654 44445555555555555555555555555554321 355555555555555444444333333333
Q ss_pred Eccccc
Q psy5670 540 RLDGNY 545 (1269)
Q Consensus 540 ~L~~n~ 545 (1269)
.|.+|.
T Consensus 857 ~L~~n~ 862 (876)
T 4ecn_A 857 VLLYDK 862 (876)
T ss_dssp EEECCT
T ss_pred eecCCC
Confidence 344433
No 23
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=3.3e-37 Score=374.33 Aligned_cols=417 Identities=23% Similarity=0.316 Sum_probs=265.9
Q ss_pred EEEccCCCCCCchhhhcCCCCCcEEECCCCCCCccChhhhhccccCCeeeccCCcCC-CCChhhhcCCCCCCEEEcCCCc
Q psy5670 443 DFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNIS-NISKGVFEKLSVLTILNLASNK 521 (1269)
Q Consensus 443 ~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~-~i~~~~f~~l~~L~~L~Ls~n~ 521 (1269)
.++.+++.++.+|. + .++|++|++++|.++++.+..|..+++|+.|++++|.+. .++...|.++++|++|+|++|+
T Consensus 14 ~~~c~~~~l~~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~ 90 (455)
T 3v47_A 14 NAICINRGLHQVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90 (455)
T ss_dssp EEECCSSCCSSCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCT
T ss_pred ccCcCCCCcccCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCc
Confidence 45555666666665 2 256666666666666666666666666666666666663 5555566666677777777776
Q ss_pred cccccccccCCCCCccEEEcccccccc-cC--CcCCCCCCCcEEEccCCcCccccccc---cCCCccEEECCCCCccccc
Q psy5670 522 IQKVEAGTFDNNSNLVAIRLDGNYLTD-IG--GLFPKLPNLVWLNISENLLEWFDYAL---IPADLQWLDIHGNQISELG 595 (1269)
Q Consensus 522 i~~~~~~~~~~~~~L~~L~L~~n~l~~-l~--~~~~~l~~L~~L~Ls~n~l~~~~~~~---lp~~L~~L~Ls~n~l~~~~ 595 (1269)
++++.+..|.++++|++|++++|.+++ ++ ..+..+++|++|++++|+++...... -.++|++|++++|+++.+.
T Consensus 91 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 170 (455)
T 3v47_A 91 FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSIC 170 (455)
T ss_dssp TCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCC
T ss_pred cCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccC
Confidence 666666666666667777776666664 22 23566666666666666655432111 1123444444444443332
Q ss_pred cc-ccccccccccEEEcCCCccccccCCcccCCccEEEccCcccccccCCccCCCCCccEEEcCCCCccccccccccccc
Q psy5670 596 NY-FEIESQLRLTYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISP 674 (1269)
Q Consensus 596 ~~-~~l~~~~~L~~LdLs~N~l~~~~~~~~~~~L~~L~Ls~N~i~~~~~~~f~~~~~L~~LdLs~N~l~~l~~~~~~~~~ 674 (1269)
.. +.-....+|+.|++++|.+.++....+.. .....+..+++|+.|++++|++++..+..+. .
T Consensus 171 ~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~--------------~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~--~ 234 (455)
T 3v47_A 171 EEDLLNFQGKHFTLLRLSSITLQDMNEYWLGW--------------EKCGNPFKNTSITTLDLSGNGFKESMAKRFF--D 234 (455)
T ss_dssp TTTSGGGTTCEEEEEECTTCBCTTCSTTCTTH--------------HHHCCTTTTCEEEEEECTTSCCCHHHHHHHH--H
T ss_pred hhhhhccccccccccccccCcccccchhhccc--------------cccccccccceeeeEecCCCcccccchhhhh--c
Confidence 21 00001134555555555555443322110 0000122334455555555554443222211 0
Q ss_pred CCCCCCCCceEecCCccccccCChhHHhhccccccCCCcccccCccccccccccCCCcccccccCCCccccccccCcccc
Q psy5670 675 LPSHKNIPDFYIGENPFQCDCNMQWLQSYSVNKERNKPNLVDLDTVTCKLLYNRANPAILLKEAHSNQFLCEYETNCAPL 754 (1269)
Q Consensus 675 ~~~~~~l~~l~l~~Np~~c~c~~~~l~~~~~~~~~~~~~~~~l~~~~c~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 754 (1269)
.....+++.+++++|....... . .. .+.+....
T Consensus 235 ~~~~~~L~~L~l~~~~~~~~~~-------~------~~---------------------~~~~~~~~------------- 267 (455)
T 3v47_A 235 AIAGTKIQSLILSNSYNMGSSF-------G------HT---------------------NFKDPDNF------------- 267 (455)
T ss_dssp HTTTCCEEEEECTTCTTTSCCT-------T------CC---------------------SSCCCCTT-------------
T ss_pred cccccceeeEeecccccccccc-------c------hh---------------------hhccCccc-------------
Confidence 0011223333333322110000 0 00 00000000
Q ss_pred cccccCCCCcccCCCCCCceecCCCCCcceeeecCCCCccccCCCCCCCCCcEEEecCCCCCCcCCCcCCCCCCccEEEc
Q psy5670 755 CHCCDFDACDCEMTCPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFL 834 (1269)
Q Consensus 755 ~~~~~~~~~~~~~~cp~~C~c~~~~~~~~~~v~c~~~~l~~~~p~~~p~~~~~l~l~~n~i~~l~~~~f~~~~~L~~L~l 834 (1269)
.+... -...++.|++++|.++.+.+..|.++++|++|++
T Consensus 268 -------------------------------------~~~~~----~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 306 (455)
T 3v47_A 268 -------------------------------------TFKGL----EASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTL 306 (455)
T ss_dssp -------------------------------------TTGGG----TTSCCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred -------------------------------------ccccc----cccCceEEEecCccccccchhhcccCCCCCEEEC
Confidence 00000 1134689999999999999999999999999999
Q ss_pred cCcCccccccccccCCCCCCEEeCCCCCCcccCcccccCCcccCeeecccccCcccChhhhhcCcccceEeccCccceee
Q psy5670 835 NSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSF 914 (1269)
Q Consensus 835 ~~n~i~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~ 914 (1269)
++|+++.+.+..|.++++|+.|+|++|+++.+.+..|.++++|++|+|++|+|+.+++..|..+++|++|+|++|+|+.+
T Consensus 307 s~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 386 (455)
T 3v47_A 307 AQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSV 386 (455)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecc-c-ccCCccEEEeeCCcccccCCcHHHHHHHHHhccCCcCccCcceeccCCcc
Q psy5670 915 AVW-H-LSSQIQSITLTSNPWSCDCDFTEKFRDYLQRSRSSVHDISQIRCMTGSEV 968 (1269)
Q Consensus 915 ~~~-~-~~~~l~~l~l~~Np~~C~C~~~~~~~~w~~~~~~~i~~~~~~~C~~p~~~ 968 (1269)
++. + .+++|+.|++++|||.|+|+...|+..|++..... ......|..+...
T Consensus 387 ~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~~~--~~~~~~c~~~~~~ 440 (455)
T 3v47_A 387 PDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQK--EQGSAKCSGSGKP 440 (455)
T ss_dssp CTTTTTTCTTCCEEECCSSCBCCCTTTTHHHHHHHHHTTTT--EESCCBBTTTCCB
T ss_pred CHhHhccCCcccEEEccCCCcccCCCcchHHHHHHHhCccc--eeeeeeecCCCcc
Confidence 998 6 78999999999999999999778999999876443 3456789876544
No 24
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.6e-37 Score=396.32 Aligned_cols=443 Identities=20% Similarity=0.227 Sum_probs=323.5
Q ss_pred CcccEEEcCCCCCCccCcccCCCCCCCCEEEc-cCCCCcccchhh-----------------------------------
Q psy5670 221 INLRVLDLSNNSFDSLPAEGFSRLSRLQELYL-QGNILTFLADHA----------------------------------- 264 (1269)
Q Consensus 221 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L-~~n~l~~~~~~~----------------------------------- 264 (1269)
.+++.|+|+++.+.+..+..|+++++|+.|+| ++|.+.+..+..
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 57888888888888766667888888888888 777554331100
Q ss_pred -----h-----------cCCCCCcEEEccC--CCCCCCCcccccCCCCCcEEEeeCCcccc-----------------cC
Q psy5670 265 -----L-----------DGLNSLTVLNLSV--NNLVNIPPELFNQSRDLKEVYLQNNSINV-----------------LA 309 (1269)
Q Consensus 265 -----~-----------~~l~~L~~L~Ls~--n~l~~l~~~~f~~l~~L~~L~L~~n~l~~-----------------~~ 309 (1269)
+ .....++.+.+.. |+++++|. .|.++++|+.|+|++|.+++ ..
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~-~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISK-AIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECG-GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccchhH-HHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence 0 1112233333332 55666765 46889999999999999988 13
Q ss_pred ccccc--CCCCCCEEECcCCCCCccccCcccccCCCCccEEEcCCCC-Ccc-cCchhhc-------CCCCCcEEEccCCc
Q psy5670 310 PGIFN--VLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNK-MNK-LDSSIFK-------DLYRLQVLHLENNQ 378 (1269)
Q Consensus 310 ~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~-~~~~~~~-------~l~~L~~L~Ls~n~ 378 (1269)
|..++ ++++|+.|+|++|.+.+. .+..+.++++|+.|++++|. +++ ..+..+. .+++|++|++++|.
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~~~--iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~ 559 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNMTQ--LPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN 559 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTCCS--CCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC
T ss_pred ChhhhhccCCCCCEEECcCCCCCcc--ChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc
Confidence 44545 899999999999987763 36788899999999999997 776 3344343 44599999999999
Q ss_pred cccccc-ccccCCCCCcEEEccCCcccccCcccccCCCCCCEEEccCCCCCccChhhhcCCCC-CcEEEccCCCCCCchh
Q psy5670 379 IESIHR-NTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTS-LQDFHLNGNKLTEIPK 456 (1269)
Q Consensus 379 l~~i~~-~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~-L~~L~Ls~n~l~~lp~ 456 (1269)
++.++. ..|..+++|+.|++++|+++.+. .+..+++|+.|+|++|.+..+ +..+..+++ |+.|++++|.++.+|.
T Consensus 560 L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp--~~~~L~~L~~L~Ls~N~l~~l-p~~l~~l~~~L~~L~Ls~N~L~~lp~ 636 (876)
T 4ecn_A 560 LEEFPASASLQKMVKLGLLDCVHNKVRHLE--AFGTNVKLTDLKLDYNQIEEI-PEDFCAFTDQVEGLGFSHNKLKYIPN 636 (876)
T ss_dssp CCBCCCHHHHTTCTTCCEEECTTSCCCBCC--CCCTTSEESEEECCSSCCSCC-CTTSCEECTTCCEEECCSSCCCSCCS
T ss_pred CCccCChhhhhcCCCCCEEECCCCCcccch--hhcCCCcceEEECcCCccccc-hHHHhhccccCCEEECcCCCCCcCch
Confidence 997765 36889999999999999998444 788999999999999999854 455888888 9999999999999998
Q ss_pred hhcCCCC--CcEEECCCCCCCccChh---hhh--ccccCCeeeccCCcCCCCChhhhcCCCCCCEEEcCCCccccccccc
Q psy5670 457 VLRNLHS--LKTLDLGDNLITEINNL---SLN--SLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGT 529 (1269)
Q Consensus 457 ~l~~l~~--L~~L~Ls~n~i~~~~~~---~~~--~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~ 529 (1269)
.+..++. |+.|++++|.+.+..+. .+. .+++|+.|+|++|.+..++...|..+++|+.|+|++|+++.++...
T Consensus 637 ~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~ 716 (876)
T 4ecn_A 637 IFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENS 716 (876)
T ss_dssp CCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTS
T ss_pred hhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHH
Confidence 7766654 99999999999876542 122 3458999999999999999888889999999999999999887766
Q ss_pred cCCC-------CCccEEEcccccccccCCcCC--CCCCCcEEEccCCcCccccccc-cCCCccEEECCCCCccccccccc
Q psy5670 530 FDNN-------SNLVAIRLDGNYLTDIGGLFP--KLPNLVWLNISENLLEWFDYAL-IPADLQWLDIHGNQISELGNYFE 599 (1269)
Q Consensus 530 ~~~~-------~~L~~L~L~~n~l~~l~~~~~--~l~~L~~L~Ls~n~l~~~~~~~-lp~~L~~L~Ls~n~l~~~~~~~~ 599 (1269)
+... ++|+.|+|++|+++.+|..+. .+++|+.|++++|+++.++... -.++|+.|+|++|+
T Consensus 717 ~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~--------- 787 (876)
T 4ecn_A 717 LKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQR--------- 787 (876)
T ss_dssp SSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCB---------
T ss_pred hccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCC---------
Confidence 6543 389999999999999987776 8889999999888887543211 11245555554433
Q ss_pred ccccccccEEEcCCCccccccCCccc--CCccEEEccCcccccccCCccCCCCCccEEEcCCCCcccccccccccccCCC
Q psy5670 600 IESQLRLTYFDASSNKLTELTGNAIP--HSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPS 677 (1269)
Q Consensus 600 l~~~~~L~~LdLs~N~l~~~~~~~~~--~~L~~L~Ls~N~i~~~~~~~f~~~~~L~~LdLs~N~l~~l~~~~~~~~~~~~ 677 (1269)
++++|++.+..+..+. ++|+.|+|++|+++. +|..+. ++|+.|||++|++..++...+...
T Consensus 788 ----------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~-Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~---- 850 (876)
T 4ecn_A 788 ----------DAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK-VDEKLT--PQLYILDIADNPNISIDVTSVCPY---- 850 (876)
T ss_dssp ----------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCB-CCSCCC--SSSCEEECCSCTTCEEECGGGHHH----
T ss_pred ----------CcccccccccChHHHhcCCCCCEEECCCCCCCc-cCHhhc--CCCCEEECCCCCCCccChHHcccc----
Confidence 2234666655544443 478888888888844 444444 588888888888888776554211
Q ss_pred CCCCCceEecCCcccc--ccC
Q psy5670 678 HKNIPDFYIGENPFQC--DCN 696 (1269)
Q Consensus 678 ~~~l~~l~l~~Np~~c--~c~ 696 (1269)
.....+.+.+|+..+ +|+
T Consensus 851 -~~~~~~~L~~n~~~~I~gC~ 870 (876)
T 4ecn_A 851 -IEAGMYVLLYDKTQDIRGCD 870 (876)
T ss_dssp -HHTTCCEEECCTTSEEESCG
T ss_pred -ccchheeecCCCccccCCCC
Confidence 122345667776654 665
No 25
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=3.5e-37 Score=387.99 Aligned_cols=420 Identities=19% Similarity=0.252 Sum_probs=301.9
Q ss_pred CcccEEEcCCCCCCccCcccCCCCCCCCEEEccCCCCcccc---------------------------------hhhhc-
Q psy5670 221 INLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLA---------------------------------DHALD- 266 (1269)
Q Consensus 221 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~---------------------------------~~~~~- 266 (1269)
.+++.|+|+++.+.+..+..|+++++|+.|+|++|.+.... +..+.
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~ 160 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence 47999999999999766678999999999999999651100 00000
Q ss_pred ------------------CCCCCcEEEcc--CCCCCCCCcccccCCCCCcEEEeeCCccccc-----------------C
Q psy5670 267 ------------------GLNSLTVLNLS--VNNLVNIPPELFNQSRDLKEVYLQNNSINVL-----------------A 309 (1269)
Q Consensus 267 ------------------~l~~L~~L~Ls--~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~~-----------------~ 309 (1269)
....++.+.+. .|+++++|. .|+++++|++|+|++|.+++. .
T Consensus 161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~-~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~i 239 (636)
T 4eco_A 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSK-AVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYK 239 (636)
T ss_dssp HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECG-GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhcCccccccccccccchhhhhhccccCCCccCCH-HHhcccCCCEEECcCCccccccccccccccccchhcccC
Confidence 01112222222 455666654 467888888888888888873 4
Q ss_pred ccccc--CCCCCCEEECcCCCCCccccCcccccCCCCccEEEcCCCC-Ccc-cCchhhcCC------CCCcEEEccCCcc
Q psy5670 310 PGIFN--VLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNK-MNK-LDSSIFKDL------YRLQVLHLENNQI 379 (1269)
Q Consensus 310 ~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~-~~~~~~~~l------~~L~~L~Ls~n~l 379 (1269)
|..++ ++++|++|++++|.+.+ ..+..+.++++|+.|++++|. +++ ..+..+..+ ++|++|++++|.+
T Consensus 240 p~~l~~~~l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l 317 (636)
T 4eco_A 240 TEDLKWDNLKDLTDVEVYNCPNLT--KLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNL 317 (636)
T ss_dssp TSCCCGGGCTTCCEEEEECCTTCS--SCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCC
T ss_pred chhhhhcccCCCCEEEecCCcCCc--cChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcC
Confidence 55566 88888888888888776 336778888888888888887 776 444445554 7888888888888
Q ss_pred ccccc-ccccCCCCCcEEEccCCcccccCcccccCCCCCCEEEccCCCCCccChhhhcCCCC-CcEEEccCCCCCCchhh
Q psy5670 380 ESIHR-NTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTS-LQDFHLNGNKLTEIPKV 457 (1269)
Q Consensus 380 ~~i~~-~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~-L~~L~Ls~n~l~~lp~~ 457 (1269)
+.++. ..|..+++|+.|++++|++++..+ .+..+++|+.|++++|.+..++ ..+..+++ |++|++++|.++.+|..
T Consensus 318 ~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp-~~l~~l~~~L~~L~Ls~N~l~~lp~~ 395 (636)
T 4eco_A 318 KTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIP-ANFCGFTEQVENLSFAHNKLKYIPNI 395 (636)
T ss_dssp SSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECC-TTSEEECTTCCEEECCSSCCSSCCSC
T ss_pred CccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCcccccc-HhhhhhcccCcEEEccCCcCcccchh
Confidence 86664 267888888888888888885555 7778888888888888887544 45777888 88888888888888876
Q ss_pred hcCCC--CCcEEECCCCCCCccChhhhh-------ccccCCeeeccCCcCCCCChhhhcCCCCCCEEEcCCCcccccccc
Q psy5670 458 LRNLH--SLKTLDLGDNLITEINNLSLN-------SLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAG 528 (1269)
Q Consensus 458 l~~l~--~L~~L~Ls~n~i~~~~~~~~~-------~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~ 528 (1269)
+..++ +|++|++++|.+++..+..+. .+++|+.|+|++|.+..++...|..+++|++|+|++|+++.++..
T Consensus 396 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~ 475 (636)
T 4eco_A 396 FDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKN 475 (636)
T ss_dssp CCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSS
T ss_pred hhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHH
Confidence 66544 788888888888887776666 667888888888888888877777888888888888888877666
Q ss_pred ccCCCC-------CccEEEcccccccccCCcCC--CCCCCcEEEccCCcCccccccccCCCccEEECCCCCccccccccc
Q psy5670 529 TFDNNS-------NLVAIRLDGNYLTDIGGLFP--KLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFE 599 (1269)
Q Consensus 529 ~~~~~~-------~L~~L~L~~n~l~~l~~~~~--~l~~L~~L~Ls~n~l~~~~~~~lp~~L~~L~Ls~n~l~~~~~~~~ 599 (1269)
.+.... +|+.|+|++|.++.+|..+. .+++|+.|++++|+++. ++. .
T Consensus 476 ~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~----------------------ip~--~ 531 (636)
T 4eco_A 476 SLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK----------------------FPT--Q 531 (636)
T ss_dssp SSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSS----------------------CCC--G
T ss_pred HhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCC----------------------cCh--h
Confidence 555433 77777777777777775554 66666666666666552 222 2
Q ss_pred ccccccccEEEcCCCccccccCCcccCCccEEEccCcccccccCCccCCCCCccEEEcCCCCcccccccccccccCCCCC
Q psy5670 600 IESQLRLTYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHK 679 (1269)
Q Consensus 600 l~~~~~L~~LdLs~N~l~~~~~~~~~~~L~~L~Ls~N~i~~~~~~~f~~~~~L~~LdLs~N~l~~l~~~~~~~~~~~~~~ 679 (1269)
+..+++|+.|++++|+ ++++|++.+..|..|..+++|+.|+|++|+|+.++.... +
T Consensus 532 ~~~l~~L~~L~Ls~N~----------------~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ip~~~~--------~ 587 (636)
T 4eco_A 532 PLNSSTLKGFGIRNQR----------------DAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKIT--------P 587 (636)
T ss_dssp GGGCSSCCEEECCSCB----------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCC--------T
T ss_pred hhcCCCCCEEECCCCc----------------ccccCcccccChHHHhcCCCCCEEECCCCcCCccCHhHh--------C
Confidence 3346677888887765 456677777777777777778888888877766655311 4
Q ss_pred CCCceEecCCcccc
Q psy5670 680 NIPDFYIGENPFQC 693 (1269)
Q Consensus 680 ~l~~l~l~~Np~~c 693 (1269)
+|+.+++++||+.|
T Consensus 588 ~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 588 NISVLDIKDNPNIS 601 (636)
T ss_dssp TCCEEECCSCTTCE
T ss_pred cCCEEECcCCCCcc
Confidence 67777777777665
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=5.4e-35 Score=354.82 Aligned_cols=384 Identities=25% Similarity=0.318 Sum_probs=248.7
Q ss_pred CCCCCCCcccccccCCcccccCCCCCCCCceEEEEeeecccCcccCCccccccccceeEEEEEeCCceeeccCCCchhcc
Q psy5670 30 YQAPDECKWFAVTSEGAEIEVPSAAEPDQEVALVCKLRTINSEIENTNFSIIQAQYTVRLRIECGDMLFFQSSLSPGSFQ 109 (1269)
Q Consensus 30 ~~cp~~C~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~i~~~~~~~~~s~~~~~~~~~L~L~~~~~~~~~~~i~~~~f~ 109 (1269)
++||..|.|.+. .+.|....++.+| . .++++++|+|++|. .+.+++.+|+
T Consensus 2 ~p~~~~c~~~~~-------------------~~~c~~~~l~~lp------~-l~~~l~~L~Ls~n~----i~~~~~~~~~ 51 (455)
T 3v47_A 2 DPGTSECSVIGY-------------------NAICINRGLHQVP------E-LPAHVNYVDLSLNS----IAELNETSFS 51 (455)
T ss_dssp -----CCEEETT-------------------EEECCSSCCSSCC------C-CCTTCCEEECCSSC----CCEECTTTTS
T ss_pred CCccceeEEEcc-------------------ccCcCCCCcccCC------C-CCCccCEEEecCCc----cCcCChhHhc
Confidence 579999999753 5788888887776 2 24667777777776 3455555677
Q ss_pred CCcccceeEeccccCC-CCChhhccCCccCceeecccccCCCCccceeccchhhhhcCCCCCEEEccCCCCcc--CCccc
Q psy5670 110 TLIDLKDLSVEFCKIG-NLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHNVFTDELQSLESLDLSMNSIWT--LPDAI 186 (1269)
Q Consensus 110 ~l~~L~~L~L~~~~i~-~i~~~~f~~l~~L~~L~L~~~~~~~~~~~~~i~~~~f~~~l~~L~~L~Ls~n~l~~--l~~~~ 186 (1269)
++++|++|+|++|.+. .+++.+|.++++|++|+++++.. ..+.+..| .++++|++|++++|.+.+ .+...
T Consensus 52 ~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l------~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~ 124 (455)
T 3v47_A 52 RLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF------LQLETGAF-NGLANLEVLTLTQCNLDGAVLSGNF 124 (455)
T ss_dssp SCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTT------CEECTTTT-TTCTTCCEEECTTSCCBTHHHHSST
T ss_pred cCccccEEECcCCcccceECcccccccccCCEEeCCCCcc------CccChhhc-cCcccCCEEeCCCCCCCccccCccc
Confidence 7777777777766654 45455555555555555543322 12334444 555555555555555543 12223
Q ss_pred CCCCCCCcEEECCCCCCCCCCccccCCCCcccCCCcccEEEcCCCCCCccCcccCCCCCCCCEEEccCCCCcccchhhhc
Q psy5670 187 FCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALD 266 (1269)
Q Consensus 187 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 266 (1269)
|..+++|++|+|++|++.+..+.. .+.++++|++|++++|.+.+..+..+.
T Consensus 125 ~~~l~~L~~L~L~~n~l~~~~~~~-----------------------------~~~~l~~L~~L~L~~n~l~~~~~~~l~ 175 (455)
T 3v47_A 125 FKPLTSLEMLVLRDNNIKKIQPAS-----------------------------FFLNMRRFHVLDLTFNKVKSICEEDLL 175 (455)
T ss_dssp TTTCTTCCEEECCSSBCCSCCCCG-----------------------------GGGGCTTCCEEECTTCCBSCCCTTTSG
T ss_pred ccCcccCCEEECCCCccCccCccc-----------------------------ccCCCCcccEEeCCCCcccccChhhhh
Confidence 445555555555555554443322 144444444444444444444444333
Q ss_pred CC--CCCcEEEccCCCCCCCCcccc--------cCCCCCcEEEeeCCcccccCcccccCC---CCCCEEECcCCCCCccc
Q psy5670 267 GL--NSLTVLNLSVNNLVNIPPELF--------NQSRDLKEVYLQNNSINVLAPGIFNVL---TQLIVLDLSNNELTEEW 333 (1269)
Q Consensus 267 ~l--~~L~~L~Ls~n~l~~l~~~~f--------~~l~~L~~L~L~~n~l~~~~~~~~~~l---~~L~~L~L~~n~l~~~~ 333 (1269)
.+ .+|+.|++++|.+..+++..+ ..+++|++|++++|.+++..+..+... ++|+.|++++|......
T Consensus 176 ~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 255 (455)
T 3v47_A 176 NFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSS 255 (455)
T ss_dssp GGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCC
T ss_pred ccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccc
Confidence 33 345555555555444433221 133455555555555554444333322 55566666555433211
Q ss_pred c--------Cccccc--CCCCccEEEcCCCCCcccCchhhcCCCCCcEEEccCCcccccccccccCCCCCcEEEccCCcc
Q psy5670 334 V--------NAATFS--GLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKL 403 (1269)
Q Consensus 334 ~--------~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l 403 (1269)
. ....+. ..++|+.|++++|.+.+..+..+..+++|++|++++|.++.+++..|..+++|+.|++++|++
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 335 (455)
T 3v47_A 256 FGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL 335 (455)
T ss_dssp TTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred cchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCcc
Confidence 1 111122 236899999999999999888899999999999999999999888899999999999999999
Q ss_pred cccCcccccCCCCCCEEEccCCCCCccChhhhcCCCCCcEEEccCCCCCCchh-hhcCCCCCcEEECCCCCCCccCh
Q psy5670 404 KRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPK-VLRNLHSLKTLDLGDNLITEINN 479 (1269)
Q Consensus 404 ~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~Ls~n~i~~~~~ 479 (1269)
+++.+..+.++++|++|+|++|.+.++.+..|..+++|++|++++|+++.+|. .+..+++|++|++++|.+++..+
T Consensus 336 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 336 GSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 99988889999999999999999999988899999999999999999998886 46889999999999999987654
No 27
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.5e-35 Score=356.47 Aligned_cols=407 Identities=22% Similarity=0.288 Sum_probs=246.2
Q ss_pred CcccEEEcCCCCCCccCcccCCCCCCCCEEEccCCCCcccchhhhcCCCC-------------CcEEEccCCCCCCCCcc
Q psy5670 221 INLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNS-------------LTVLNLSVNNLVNIPPE 287 (1269)
Q Consensus 221 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-------------L~~L~Ls~n~l~~l~~~ 287 (1269)
+.|++|++++|.+..+|+ .++++++|++|++++|.+.+..|..++++++ +++|++++|.++++|.
T Consensus 11 ~~L~~L~l~~n~l~~iP~-~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~- 88 (454)
T 1jl5_A 11 TFLQEPLRHSSNLTEMPV-EAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPE- 88 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCS-
T ss_pred ccchhhhcccCchhhCCh-hHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCC-
Confidence 456666666666644443 3566666666666666665555555555554 5899999999888875
Q ss_pred cccCCCCCcEEEeeCCcccccCcccccCCCCCCEEECcCCCCCccccCcccccCCCCccEEEcCCCCCcccCchhhcCCC
Q psy5670 288 LFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLY 367 (1269)
Q Consensus 288 ~f~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 367 (1269)
..++|++|++++|.+++++. .+++|+.|++++|.+.+ ++ .+ .++|++|++++|.+++++ .|+.++
T Consensus 89 ---~~~~L~~L~l~~n~l~~lp~----~~~~L~~L~l~~n~l~~--l~--~~--~~~L~~L~L~~n~l~~lp--~~~~l~ 153 (454)
T 1jl5_A 89 ---LPPHLESLVASCNSLTELPE----LPQSLKSLLVDNNNLKA--LS--DL--PPLLEYLGVSNNQLEKLP--ELQNSS 153 (454)
T ss_dssp ---CCTTCSEEECCSSCCSSCCC----CCTTCCEEECCSSCCSC--CC--SC--CTTCCEEECCSSCCSSCC--CCTTCT
T ss_pred ---CcCCCCEEEccCCcCCcccc----ccCCCcEEECCCCccCc--cc--CC--CCCCCEEECcCCCCCCCc--ccCCCC
Confidence 24789999999998888653 24789999999988875 21 11 268889999999888865 388888
Q ss_pred CCcEEEccCCcccccccccccCCCCCcEEEccCCcccccCcccccCCCCCCEEEccCCCCCccChhhhcCCCCCcEEEcc
Q psy5670 368 RLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLN 447 (1269)
Q Consensus 368 ~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls 447 (1269)
+|++|++++|.++.++.. ..+|++|++++|+++++. .+.++++|+.|++++|.+.+++.. .++|++|+++
T Consensus 154 ~L~~L~l~~N~l~~lp~~----~~~L~~L~L~~n~l~~l~--~~~~l~~L~~L~l~~N~l~~l~~~----~~~L~~L~l~ 223 (454)
T 1jl5_A 154 FLKIIDVDNNSLKKLPDL----PPSLEFIAAGNNQLEELP--ELQNLPFLTAIYADNNSLKKLPDL----PLSLESIVAG 223 (454)
T ss_dssp TCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSCCSSCCCC----CTTCCEEECC
T ss_pred CCCEEECCCCcCcccCCC----cccccEEECcCCcCCcCc--cccCCCCCCEEECCCCcCCcCCCC----cCcccEEECc
Confidence 999999999888876542 358888888888888754 478888888888888888775431 2578888888
Q ss_pred CCCCCCchhhhcCCCCCcEEECCCCCCCccChhhhhccccCCeeeccCCcCCCCChhhhcCCCCCCEEEcCCCccccccc
Q psy5670 448 GNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEA 527 (1269)
Q Consensus 448 ~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~ 527 (1269)
+|.++.+|. +..+++|++|++++|.+++++. .+++|+.|++++|.+..++.. +++|+.|++++|++++++.
T Consensus 224 ~n~l~~lp~-~~~l~~L~~L~l~~N~l~~l~~----~~~~L~~L~l~~N~l~~l~~~----~~~L~~L~ls~N~l~~l~~ 294 (454)
T 1jl5_A 224 NNILEELPE-LQNLPFLTTIYADNNLLKTLPD----LPPSLEALNVRDNYLTDLPEL----PQSLTFLDVSENIFSGLSE 294 (454)
T ss_dssp SSCCSSCCC-CTTCTTCCEEECCSSCCSSCCS----CCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSEESC
T ss_pred CCcCCcccc-cCCCCCCCEEECCCCcCCcccc----cccccCEEECCCCcccccCcc----cCcCCEEECcCCccCcccC
Confidence 888888874 7788888888888888887653 246788888888888777642 4678888888888877542
Q ss_pred cccCCCCCccEEEcccccccccCCcCCCCCCCcEEEccCCcCccccccccCCCccEEECCCCCccccccccccccccccc
Q psy5670 528 GTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLT 607 (1269)
Q Consensus 528 ~~~~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~lp~~L~~L~Ls~n~l~~~~~~~~l~~~~~L~ 607 (1269)
..++|+.|++++|.+++++.. .++|+.|++++|+++.++. .+++|+.|++++|+++.++. .+.+|+
T Consensus 295 ----~~~~L~~L~l~~N~l~~i~~~---~~~L~~L~Ls~N~l~~lp~--~~~~L~~L~L~~N~l~~lp~-----~l~~L~ 360 (454)
T 1jl5_A 295 ----LPPNLYYLNASSNEIRSLCDL---PPSLEELNVSNNKLIELPA--LPPRLERLIASFNHLAEVPE-----LPQNLK 360 (454)
T ss_dssp ----CCTTCCEEECCSSCCSEECCC---CTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCCCC-----CCTTCC
T ss_pred ----cCCcCCEEECcCCcCCcccCC---cCcCCEEECCCCccccccc--cCCcCCEEECCCCccccccc-----hhhhcc
Confidence 136788888888887776532 2477888888887776543 24677788888887777665 246777
Q ss_pred EEEcCCCccccccCCcccCCccEEEccCcccccccCCccCCCCCccEEEcCCCCcccccccccccccCCCCCCCCceEec
Q psy5670 608 YFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHKNIPDFYIG 687 (1269)
Q Consensus 608 ~LdLs~N~l~~~~~~~~~~~L~~L~Ls~N~i~~~~~~~f~~~~~L~~LdLs~N~l~~l~~~~~~~~~~~~~~~l~~l~l~ 687 (1269)
+|++++|++++++ .+|.++..|. .|.+.+.+|.. +++|+.||+++|++++++. +| .++..+.++
T Consensus 361 ~L~L~~N~l~~l~--~ip~~l~~L~--~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~-------iP--~sl~~L~~~ 424 (454)
T 1jl5_A 361 QLHVEYNPLREFP--DIPESVEDLR--MNSHLAEVPEL---PQNLKQLHVETNPLREFPD-------IP--ESVEDLRMN 424 (454)
T ss_dssp EEECCSSCCSSCC--CCCTTCCEEE--CCC--------------------------------------------------
T ss_pred EEECCCCCCCcCC--CChHHHHhhh--hcccccccccc---cCcCCEEECCCCcCCcccc-------ch--hhHhheeCc
Confidence 7888877777654 2455555543 34455544432 4789999999999987532 22 245566677
Q ss_pred CCcccc
Q psy5670 688 ENPFQC 693 (1269)
Q Consensus 688 ~Np~~c 693 (1269)
+|.+.|
T Consensus 425 ~~~~~~ 430 (454)
T 1jl5_A 425 SERVVD 430 (454)
T ss_dssp ------
T ss_pred CcccCC
Confidence 665543
No 28
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=7.2e-34 Score=341.85 Aligned_cols=416 Identities=23% Similarity=0.263 Sum_probs=215.8
Q ss_pred CCCCCEEEccCCCCccCCcccCCCCCCCcEEECCCCCCCCCCccccCCCCccc-------CCCcccEEEcCCCCCCccCc
Q psy5670 166 LQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTAR-------CGINLRVLDLSNNSFDSLPA 238 (1269)
Q Consensus 166 l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~-------~l~~L~~L~Ls~n~l~~~~~ 238 (1269)
.++|++|++++|.+..+|+. ++++++|++|++++|++.+..+..+..+..+. ...++++|++++|.+++++.
T Consensus 10 ~~~L~~L~l~~n~l~~iP~~-i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~ 88 (454)
T 1jl5_A 10 NTFLQEPLRHSSNLTEMPVE-AENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPE 88 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCS
T ss_pred cccchhhhcccCchhhCChh-HhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCC
Confidence 35666666666666666654 46666666666666665544443333211000 00235777777777777654
Q ss_pred ccCCCCCCCCEEEccCCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCCcccccCcccccCCCC
Q psy5670 239 EGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQ 318 (1269)
Q Consensus 239 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 318 (1269)
+ .++|++|++++|.+++++. ..++|++|++++|+++.++.. .++|++|++++|.+++++ .|+++++
T Consensus 89 --~--~~~L~~L~l~~n~l~~lp~----~~~~L~~L~l~~n~l~~l~~~----~~~L~~L~L~~n~l~~lp--~~~~l~~ 154 (454)
T 1jl5_A 89 --L--PPHLESLVASCNSLTELPE----LPQSLKSLLVDNNNLKALSDL----PPLLEYLGVSNNQLEKLP--ELQNSSF 154 (454)
T ss_dssp --C--CTTCSEEECCSSCCSSCCC----CCTTCCEEECCSSCCSCCCSC----CTTCCEEECCSSCCSSCC--CCTTCTT
T ss_pred --C--cCCCCEEEccCCcCCcccc----ccCCCcEEECCCCccCcccCC----CCCCCEEECcCCCCCCCc--ccCCCCC
Confidence 1 3677777777777777542 236777777777777766531 257777777777777754 3677777
Q ss_pred CCEEECcCCCCCccccCcccccCCCCccEEEcCCCCCcccCchhhcCCCCCcEEEccCCcccccccccccCCCCCcEEEc
Q psy5670 319 LIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIM 398 (1269)
Q Consensus 319 L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~L 398 (1269)
|++|++++|.+++ ++ . ...+|+.|++++|.+.+++ .+..+++|++|++++|.++.++.. .++|+.|++
T Consensus 155 L~~L~l~~N~l~~--lp-~---~~~~L~~L~L~~n~l~~l~--~~~~l~~L~~L~l~~N~l~~l~~~----~~~L~~L~l 222 (454)
T 1jl5_A 155 LKIIDVDNNSLKK--LP-D---LPPSLEFIAAGNNQLEELP--ELQNLPFLTAIYADNNSLKKLPDL----PLSLESIVA 222 (454)
T ss_dssp CCEEECCSSCCSC--CC-C---CCTTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSCCSSCCCC----CTTCCEEEC
T ss_pred CCEEECCCCcCcc--cC-C---CcccccEEECcCCcCCcCc--cccCCCCCCEEECCCCcCCcCCCC----cCcccEEEC
Confidence 7777777777664 21 1 1246777777777777654 366777777777777777665432 246777777
Q ss_pred cCCcccccCcccccCCCCCCEEEccCCCCCccChhhhcCCCCCcEEEccCCCCCCchhhhcCCCCCcEEECCCCCCCccC
Q psy5670 399 SNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEIN 478 (1269)
Q Consensus 399 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~ 478 (1269)
++|.+..+. .+..+++|++|++++|.+.+++. ..++|+.|++++|.++.+|.. .++|++|++++|.++++.
T Consensus 223 ~~n~l~~lp--~~~~l~~L~~L~l~~N~l~~l~~----~~~~L~~L~l~~N~l~~l~~~---~~~L~~L~ls~N~l~~l~ 293 (454)
T 1jl5_A 223 GNNILEELP--ELQNLPFLTTIYADNNLLKTLPD----LPPSLEALNVRDNYLTDLPEL---PQSLTFLDVSENIFSGLS 293 (454)
T ss_dssp CSSCCSSCC--CCTTCTTCCEEECCSSCCSSCCS----CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSEES
T ss_pred cCCcCCccc--ccCCCCCCCEEECCCCcCCcccc----cccccCEEECCCCcccccCcc---cCcCCEEECcCCccCccc
Confidence 777776443 36677777777777777766543 236777777777777776643 356777777777776643
Q ss_pred hhhhhccccCCeeeccCCcCCCCChhhhcCCCCCCEEEcCCCccccccccccCCCCCccEEEcccccccccCCcCCCCCC
Q psy5670 479 NLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPN 558 (1269)
Q Consensus 479 ~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~l~~~~~~l~~ 558 (1269)
.. .++|+.|++++|.+..++. ..++|++|++++|++++++.. +++|+.|++++|+++.+|. .+++
T Consensus 294 ~~----~~~L~~L~l~~N~l~~i~~----~~~~L~~L~Ls~N~l~~lp~~----~~~L~~L~L~~N~l~~lp~---~l~~ 358 (454)
T 1jl5_A 294 EL----PPNLYYLNASSNEIRSLCD----LPPSLEELNVSNNKLIELPAL----PPRLERLIASFNHLAEVPE---LPQN 358 (454)
T ss_dssp CC----CTTCCEEECCSSCCSEECC----CCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSCCCC---CCTT
T ss_pred Cc----CCcCCEEECcCCcCCcccC----CcCcCCEEECCCCcccccccc----CCcCCEEECCCCccccccc---hhhh
Confidence 21 2567777777777655432 124677777777777664331 4667777777777776665 3566
Q ss_pred CcEEEccCCcCccccccccCCCccEEECCCCCcccccccccccccccccEEEcCCCccccccCCcccCCccEEEccCccc
Q psy5670 559 LVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPHSVENLFLTNNLI 638 (1269)
Q Consensus 559 L~~L~Ls~n~l~~~~~~~lp~~L~~L~Ls~n~l~~~~~~~~l~~~~~L~~LdLs~N~l~~~~~~~~~~~L~~L~Ls~N~i 638 (1269)
|+.|++++|+++.++ .+|..+..|.. ++....++. ..++|+.||+++|++++++ .+|.+++.|.+.+|.+
T Consensus 359 L~~L~L~~N~l~~l~--~ip~~l~~L~~-n~~~~~i~~-----~~~~L~~L~ls~N~l~~~~--~iP~sl~~L~~~~~~~ 428 (454)
T 1jl5_A 359 LKQLHVEYNPLREFP--DIPESVEDLRM-NSHLAEVPE-----LPQNLKQLHVETNPLREFP--DIPESVEDLRMNSERV 428 (454)
T ss_dssp CCEEECCSSCCSSCC--CCCTTCCEEEC-CC-------------------------------------------------
T ss_pred ccEEECCCCCCCcCC--CChHHHHhhhh-ccccccccc-----ccCcCCEEECCCCcCCccc--cchhhHhheeCcCccc
Confidence 777777777666432 35555555432 111112221 1245666666666666542 3455566666655555
Q ss_pred cccc
Q psy5670 639 SKVQ 642 (1269)
Q Consensus 639 ~~~~ 642 (1269)
.+..
T Consensus 429 ~~~~ 432 (454)
T 1jl5_A 429 VDPY 432 (454)
T ss_dssp ----
T ss_pred CCcc
Confidence 4443
No 29
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.1e-32 Score=334.87 Aligned_cols=348 Identities=27% Similarity=0.404 Sum_probs=212.5
Q ss_pred cCCCCCEEEccCCCCccCCcccCCCCCCCcEEECCCCCCCCCCccccCCCCcccCCCcccEEEcCCCCCCccCcccCCCC
Q psy5670 165 ELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRL 244 (1269)
Q Consensus 165 ~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 244 (1269)
.+++|+.|+++++.+..++. +..+++|++|++++|.+.++++ +. .+++|++|++++|.++.+++ ++++
T Consensus 44 ~l~~l~~L~l~~~~i~~l~~--~~~l~~L~~L~Ls~n~l~~~~~--~~------~l~~L~~L~l~~n~l~~~~~--~~~l 111 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKSIDG--VEYLNNLTQINFSNNQLTDITP--LK------NLTKLVDILMNNNQIADITP--LANL 111 (466)
T ss_dssp HHHTCCEEECCSSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG--GT------TCTTCCEEECCSSCCCCCGG--GTTC
T ss_pred HhccccEEecCCCCCccCcc--hhhhcCCCEEECCCCccCCchh--hh------ccccCCEEECCCCccccChh--hcCC
Confidence 34567777777776666654 4566677777777776666543 22 24566677777666666654 6666
Q ss_pred CCCCEEEccCCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCCcccccCcccccCCCCCCEEEC
Q psy5670 245 SRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDL 324 (1269)
Q Consensus 245 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 324 (1269)
++|++|++++|.++++.+ +.++++|++|++++|.+..++. +..+++|++|+++ +.+.+..+ +.++++|+.|++
T Consensus 112 ~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~-~~~~~~~~--~~~l~~L~~L~l 184 (466)
T 1o6v_A 112 TNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISA--LSGLTSLQQLSFG-NQVTDLKP--LANLTTLERLDI 184 (466)
T ss_dssp TTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGG--GTTCTTCSEEEEE-ESCCCCGG--GTTCTTCCEEEC
T ss_pred CCCCEEECCCCCCCCChH--HcCCCCCCEEECCCCccCCChh--hccCCcccEeecC-CcccCchh--hccCCCCCEEEC
Confidence 777777777766666543 6666777777777666666543 5666667777665 33444332 566667777777
Q ss_pred cCCCCCccccCcccccCCCCccEEEcCCCCCcccCchhhcCCCCCcEEEccCCcccccccccccCCCCCcEEEccCCccc
Q psy5670 325 SNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLK 404 (1269)
Q Consensus 325 ~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~ 404 (1269)
++|.+.. ...+..+++|+.|++++|.+.+..+ +..+++|++|++++|.++.++ .+..+++|+.|++++|.+.
T Consensus 185 ~~n~l~~----~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~ 256 (466)
T 1o6v_A 185 SSNKVSD----ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQIS 256 (466)
T ss_dssp CSSCCCC----CGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCC
T ss_pred cCCcCCC----ChhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccch--hhhcCCCCCEEECCCCccc
Confidence 7766654 2335566666666666666665544 455666666666666666553 3556666666666666666
Q ss_pred ccCcccccCCCCCCEEEccCCCCCccChhhhcCCCCCcEEEccCCCCCCchhhhcCCCCCcEEECCCCCCCccChhhhhc
Q psy5670 405 RIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNS 484 (1269)
Q Consensus 405 ~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~ 484 (1269)
+..+ +..+++|+.|++++|.+.++.+ +..+++|+.|++++|.++.++. +..+++|++|++++|.++++.+ +..
T Consensus 257 ~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~ 329 (466)
T 1o6v_A 257 NLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISP--VSS 329 (466)
T ss_dssp CCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCGG--GGG
T ss_pred cchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCCchh--hcc
Confidence 5543 5566666666666666665544 5566666666666666665554 5556666666666666665544 455
Q ss_pred cccCCeeeccCCcCCCCChhhhcCCCCCCEEEcCCCccccccccccCCCCCccEEEcccccccccC
Q psy5670 485 LHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIG 550 (1269)
Q Consensus 485 l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~l~ 550 (1269)
+++|+.|++++|.+..++ .+..+++|+.|++++|++++..+ +..+++|+.|++++|.++.+|
T Consensus 330 l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~p 391 (466)
T 1o6v_A 330 LTKLQRLFFYNNKVSDVS--SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAP 391 (466)
T ss_dssp CTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECCC
T ss_pred CccCCEeECCCCccCCch--hhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCCc
Confidence 666666666666665542 35556666666666666655544 455555555555555555544
No 30
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Probab=100.00 E-value=2.8e-35 Score=299.77 Aligned_cols=158 Identities=35% Similarity=0.643 Sum_probs=127.0
Q ss_pred HHHHHHHHHHHhcCcccccccccccccCCCCceeEEEEcccCCHHHHHHHHHHhhhcCCCCceEEEecccCCCCCchhHH
Q psy5670 1053 YRQEMRVWFHSRFGVRLFYKSSEIEMDDRDKLFDAFVSYSSKDEAFVAEELAPILENGDPAYKLCLHYREFPVGGYIGDT 1132 (1269)
Q Consensus 1053 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDafvsy~~~d~~~v~~~l~~~Le~~~~~~~l~~~~rd~~~G~~~~~~ 1132 (1269)
++.++.+||+..++.. +..++++.|||||||+++|++||.++|.+.||++++||++|+++||+.||+.+.++
T Consensus 12 ~~~~~~L~yr~~~~~~--------~~~~~~~~yDvFISys~~D~~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~ 83 (178)
T 2j67_A 12 DLGTENLYFQSMKTTQ--------EQLKRNVRFHAFISYSEHDSLWVKNELIPNLEKEDGSILICLYESYFDPGKSISEN 83 (178)
T ss_dssp --------------------------CCCSCCEEEEEECCGGGHHHHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHH
T ss_pred eeeeeeeeeecccccc--------cccCCCccceEEEECCCCCHHHHHHHHHHHHhcccCCeEEEEecccCCCCccHHHH
Confidence 5567788998887743 45667899999999999999999988999999766899999999999999999999
Q ss_pred HHHHHHhcceEEEEecccchhhhhhHHHHHHHHHHHhcCC-CeEEEEEeCCCCCCCCCH---HHHHHHhcCceEEcCC--
Q psy5670 1133 IVQAVESSRRTIMVLSENFIKSEWCRYEFKSAHHQVLRGK-KRLIVILLGEVPQKDLDP---DIRLYLKSNTYLQWGD-- 1206 (1269)
Q Consensus 1133 i~~~i~~Sr~~i~vlS~~~~~s~w~~~e~~~a~~~~~~~~-~~~i~i~~~~~~~~~~~~---~l~~~l~~~~~l~w~~-- 1206 (1269)
|.++|++||++|+|+|++|++|+||.+|++.|++++++++ .+||||++++++.+++|+ +|+.+++++|||+|++
T Consensus 84 i~~aI~~Sr~~IvVlS~~yl~S~wc~~El~~a~~~~~~~~~~~vIpV~~~~i~~~~lp~~~~~Lr~~l~~~t~l~W~~~~ 163 (178)
T 2j67_A 84 IVSFIEKSYKSIFVLSPNFVQNEWCHYEFYFAHHNLFHENSDHIILILLEPIPFYCIPTRYHKLKALLEKKAYLEWPKDR 163 (178)
T ss_dssp HHHHHHTEEEEEEEECHHHHHHTGGGTHHHHTTCC-------CEEEEESSCCCGGGSCTTCHHHHHHHHTTCSEECCSSG
T ss_pred HHHHHHhCCEEEEEecccccccchHHHHHHHHHHHHHhcCCCEEEEEEecCCChHHCChhHHHHHHHHhcCCEEECCCCc
Confidence 9999999999999999999999999999999998888776 899999999999998987 9999999999999987
Q ss_pred ---cchHHHHHHhCC
Q psy5670 1207 ---KLFWEKLKFALP 1218 (1269)
Q Consensus 1207 ---~~Fw~~l~~~l~ 1218 (1269)
++||++||+||.
T Consensus 164 ~~~~~FW~~Lr~al~ 178 (178)
T 2j67_A 164 RKCGLFWANLRAAIN 178 (178)
T ss_dssp GGHHHHHHHHHHHHC
T ss_pred chhHHHHHHHHHHhC
Confidence 589999999983
No 31
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=5.1e-32 Score=328.93 Aligned_cols=346 Identities=27% Similarity=0.423 Sum_probs=289.2
Q ss_pred CCCCCcEEECCCCCCCCCCccccCCCCcccCCCcccEEEcCCCCCCccCcccCCCCCCCCEEEccCCCCcccchhhhcCC
Q psy5670 189 PLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGL 268 (1269)
Q Consensus 189 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 268 (1269)
.+++|+.|+++++.+..++. + ..+++|++|++++|.++.+++ +.++++|++|++++|.+..+.+ +.++
T Consensus 44 ~l~~l~~L~l~~~~i~~l~~--~------~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l 111 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKSIDG--V------EYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANL 111 (466)
T ss_dssp HHHTCCEEECCSSCCCCCTT--G------GGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTC
T ss_pred HhccccEEecCCCCCccCcc--h------hhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCC
Confidence 45789999999999887653 2 336899999999999999875 8999999999999999998876 8999
Q ss_pred CCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCCcccccCcccccCCCCCCEEECcCCCCCccccCcccccCCCCccEE
Q psy5670 269 NSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVL 348 (1269)
Q Consensus 269 ~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L 348 (1269)
++|++|++++|.++.+++ +..+++|++|++++|.+.++. .+..+++|+.|++++ .+.. ...+.++++|+.|
T Consensus 112 ~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l~~-~~~~----~~~~~~l~~L~~L 182 (466)
T 1o6v_A 112 TNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSFGN-QVTD----LKPLANLTTLERL 182 (466)
T ss_dssp TTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCG--GGTTCTTCSEEEEEE-SCCC----CGGGTTCTTCCEE
T ss_pred CCCCEEECCCCCCCCChH--HcCCCCCCEEECCCCccCCCh--hhccCCcccEeecCC-cccC----chhhccCCCCCEE
Confidence 999999999999999876 789999999999999998874 378999999999974 4443 3348889999999
Q ss_pred EcCCCCCcccCchhhcCCCCCcEEEccCCcccccccccccCCCCCcEEEccCCcccccCcccccCCCCCCEEEccCCCCC
Q psy5670 349 NIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELE 428 (1269)
Q Consensus 349 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~ 428 (1269)
++++|.+..+. .+..+++|++|++++|.+..+.+ +..+++|+.|++++|+++++. .+..+++|+.|++++|.+.
T Consensus 183 ~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~ 256 (466)
T 1o6v_A 183 DISSNKVSDIS--VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQIS 256 (466)
T ss_dssp ECCSSCCCCCG--GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCC
T ss_pred ECcCCcCCCCh--hhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccch--hhhcCCCCCEEECCCCccc
Confidence 99999988764 37888999999999999887765 677889999999999888763 5778889999999999888
Q ss_pred ccChhhhcCCCCCcEEEccCCCCCCchhhhcCCCCCcEEECCCCCCCccChhhhhccccCCeeeccCCcCCCCChhhhcC
Q psy5670 429 YIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEK 508 (1269)
Q Consensus 429 ~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~ 508 (1269)
+..+ +..+++|++|++++|.++.++. +..+++|++|++++|.++++.+ +..+++|+.|++++|.+..+++ +..
T Consensus 257 ~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~ 329 (466)
T 1o6v_A 257 NLAP--LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSS 329 (466)
T ss_dssp CCGG--GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGG
T ss_pred cchh--hhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hcc
Confidence 8765 7888899999999998888876 7788889999999998888765 6788888889998888877665 678
Q ss_pred CCCCCEEEcCCCccccccccccCCCCCccEEEcccccccccCCcCCCCCCCcEEEccCCcCcc
Q psy5670 509 LSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEW 571 (1269)
Q Consensus 509 l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~l~~ 571 (1269)
+++|+.|++++|+++++ ..+..+++|+.|++++|.+++++. +..+++|+.|++++|.++.
T Consensus 330 l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 330 LTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp CTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEEEEC
T ss_pred CccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCCcccC
Confidence 88888888888888876 357788888888888888887655 6777777777777777664
No 32
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=6.9e-33 Score=338.22 Aligned_cols=333 Identities=25% Similarity=0.348 Sum_probs=228.5
Q ss_pred CCCCCCcccccccCCcccccCCCCCCCCceEEEEeeecccCcccCCccccccccceeEEEEEeCCceeeccCCCchhccC
Q psy5670 31 QAPDECKWFAVTSEGAEIEVPSAAEPDQEVALVCKLRTINSEIENTNFSIIQAQYTVRLRIECGDMLFFQSSLSPGSFQT 110 (1269)
Q Consensus 31 ~cp~~C~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~i~~~~~~~~~s~~~~~~~~~L~L~~~~~~~~~~~i~~~~f~~ 110 (1269)
.||..|+|... ...+.|....+..+|. ..+..+++|+|++|. ...+++.+|.+
T Consensus 2 ~Cp~~C~C~~~-----------------~~~v~c~~~~l~~ip~------~~~~~l~~L~L~~n~----l~~~~~~~~~~ 54 (477)
T 2id5_A 2 GCPPRCECSAQ-----------------DRAVLCHRKRFVAVPE------GIPTETRLLDLGKNR----IKTLNQDEFAS 54 (477)
T ss_dssp CCSTTCEEETT-----------------TTEEECCSCCCSSCCS------CCCTTCSEEECCSSC----CCEECTTTTTT
T ss_pred cccCCCeECCC-----------------CCEEEeCCCCcCcCCC------CCCCCCcEEECCCCc----cceECHhHccC
Confidence 69999999741 1268898888877762 124455566666555 33444445555
Q ss_pred CcccceeEeccccCCCCChhhccCCccCceeecccccCCCCccceeccchhhhhcCCCCCEEEccCCCCccCCcccCCCC
Q psy5670 111 LIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHNVFTDELQSLESLDLSMNSIWTLPDAIFCPL 190 (1269)
Q Consensus 111 l~~L~~L~L~~~~i~~i~~~~f~~l~~L~~L~L~~~~~~~~~~~~~i~~~~f~~~l~~L~~L~Ls~n~l~~l~~~~~~~l 190 (1269)
+++|++|+|++|.++.+.+ .+| .++++|++|+|++|.+..++...|.++
T Consensus 55 l~~L~~L~L~~n~i~~~~~------------------------------~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l 103 (477)
T 2id5_A 55 FPHLEELELNENIVSAVEP------------------------------GAF-NNLFNLRTLGLRSNRLKLIPLGVFTGL 103 (477)
T ss_dssp CTTCCEEECTTSCCCEECT------------------------------TTT-TTCTTCCEEECCSSCCCSCCTTSSTTC
T ss_pred CCCCCEEECCCCccCEeCh------------------------------hhh-hCCccCCEEECCCCcCCccCcccccCC
Confidence 5555555555555544443 444 556666666666666666666666666
Q ss_pred CCCcEEECCCCCCCCCCccccCCCCcccCCCcccEEEcCCCCCCccCcccCCCCCCCCEEEccCCCCcccchhhhcCCCC
Q psy5670 191 QSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNS 270 (1269)
Q Consensus 191 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 270 (1269)
++|++|+|++|++....+..|.. +++|++|++++|.++.+.+..|.++++|++|++++|.++.+.+..|.++++
T Consensus 104 ~~L~~L~Ls~n~i~~~~~~~~~~------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~ 177 (477)
T 2id5_A 104 SNLTKLDISENKIVILLDYMFQD------LYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHG 177 (477)
T ss_dssp TTCCEEECTTSCCCEECTTTTTT------CTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTT
T ss_pred CCCCEEECCCCccccCChhHccc------cccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCC
Confidence 67777777776666655544433 466777777777777766666777777777777777777777667777777
Q ss_pred CcEEEccCCCCCCCCcccccCCCCCcEEEeeCCcccccCcccccCCCCCCEEECcCCCCCccccCcccccCCCCccEEEc
Q psy5670 271 LTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNI 350 (1269)
Q Consensus 271 L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L 350 (1269)
|+.|++++|.+..+++..|..+++|+.|++++|...+..+.......+|+.|++++|.+.. ++...+..+++|+.|++
T Consensus 178 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~L 255 (477)
T 2id5_A 178 LIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTA--VPYLAVRHLVYLRFLNL 255 (477)
T ss_dssp CCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCS--CCHHHHTTCTTCCEEEC
T ss_pred CcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccc--cCHHHhcCccccCeeEC
Confidence 7777777777777776667777777777777765444333333344577777777777765 44556777777888888
Q ss_pred CCCCCcccCchhhcCCCCCcEEEccCCcccccccccccCCCCCcEEEccCCcccccCcccccCCCCCCEEEccCCCCCc
Q psy5670 351 AYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEY 429 (1269)
Q Consensus 351 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~ 429 (1269)
++|.+..+.+..|..+++|+.|++++|.++.+.+..|..+++|+.|++++|+++++.+..|..+++|+.|+|++|.+..
T Consensus 256 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 256 SYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLAC 334 (477)
T ss_dssp CSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEEC
T ss_pred CCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccC
Confidence 8877777777777777888888888888887777777888888888888888888777777788888888888887754
No 33
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.4e-31 Score=326.79 Aligned_cols=301 Identities=27% Similarity=0.385 Sum_probs=183.7
Q ss_pred cccEEEcCCCCCCccCcccCCCCCCCCEEEccCCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEee
Q psy5670 222 NLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQ 301 (1269)
Q Consensus 222 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~ 301 (1269)
+++.|+|++|.++.+++..|.++++|++|+|++|.++.+.+.+|.++++|++|+|++|+++.++...|..+++|++|+|+
T Consensus 33 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 112 (477)
T 2id5_A 33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDIS 112 (477)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECT
T ss_pred CCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECC
Confidence 56666666666666666667777777777777777777666667777777777777777777776666677777777777
Q ss_pred CCcccccCcccccCCCCCCEEECcCCCCCccccCcccccCCCCccEEEcCCCCCcccCchhhcCCCCCcEEEccCCcccc
Q psy5670 302 NNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIES 381 (1269)
Q Consensus 302 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 381 (1269)
+|.+.++.+..|.++++|+.|++++|.+.. +.+..|.++++|+.|++++|.++.+++..|..+++|+.|++++|.+..
T Consensus 113 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~ 190 (477)
T 2id5_A 113 ENKIVILLDYMFQDLYNLKSLEVGDNDLVY--ISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINA 190 (477)
T ss_dssp TSCCCEECTTTTTTCTTCCEEEECCTTCCE--ECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCE
T ss_pred CCccccCChhHccccccCCEEECCCCccce--eChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcE
Confidence 777776666666677777777777776655 445556666666666666666666666666666666666666666666
Q ss_pred cccccccCCCCCcEEEccCCcccccCcccccCCCCCCEEEccCCCCCccChhhhcCCCCCcEEEccCCCCCCchhhhcCC
Q psy5670 382 IHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNL 461 (1269)
Q Consensus 382 i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l 461 (1269)
++...|..+++|+.|++++|...+..+.......+|+.|++++|.+..+....+ ..+
T Consensus 191 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-----------------------~~l 247 (477)
T 2id5_A 191 IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAV-----------------------RHL 247 (477)
T ss_dssp ECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHH-----------------------TTC
T ss_pred eChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHh-----------------------cCc
Confidence 665566666666666666654433322222222344444444444444444444 444
Q ss_pred CCCcEEECCCCCCCccChhhhhccccCCeeeccCCcCCCCChhhhcCCCCCCEEEcCCCccccccccccCCCCCccEEEc
Q psy5670 462 HSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRL 541 (1269)
Q Consensus 462 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~L 541 (1269)
++|++|++++|.++++.+..|..+++|+.|+|++|.+..+.+..|.++++|+.|+|++|+++++++..|..+++|+.|++
T Consensus 248 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 327 (477)
T 2id5_A 248 VYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLIL 327 (477)
T ss_dssp TTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEEC
T ss_pred cccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEc
Confidence 55555555555555544444555555555555555555554445555555555555555555555555555555666666
Q ss_pred cccccc
Q psy5670 542 DGNYLT 547 (1269)
Q Consensus 542 ~~n~l~ 547 (1269)
++|.+.
T Consensus 328 ~~N~l~ 333 (477)
T 2id5_A 328 DSNPLA 333 (477)
T ss_dssp CSSCEE
T ss_pred cCCCcc
Confidence 655554
No 34
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.98 E-value=2.7e-31 Score=319.78 Aligned_cols=169 Identities=29% Similarity=0.277 Sum_probs=101.9
Q ss_pred hhhhcCCCCCEEEccCCCCccCCcccCCCCCCCcEEECCCCCCCCCCccccCCCCcccCCCcccEEEcCCCCCCccCccc
Q psy5670 161 VFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEG 240 (1269)
Q Consensus 161 ~f~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 240 (1269)
.+ +++++|++|++++|.+.++|. |..+++|++|++++|++++++ + ..+++|++|++++|.++.++
T Consensus 37 ~~-~~l~~L~~L~Ls~n~l~~~~~--l~~l~~L~~L~Ls~n~l~~~~---~------~~l~~L~~L~Ls~N~l~~~~--- 101 (457)
T 3bz5_A 37 SE-EQLATLTSLDCHNSSITDMTG--IEKLTGLTKLICTSNNITTLD---L------SQNTNLTYLACDSNKLTNLD--- 101 (457)
T ss_dssp EH-HHHTTCCEEECCSSCCCCCTT--GGGCTTCSEEECCSSCCSCCC---C------TTCTTCSEEECCSSCCSCCC---
T ss_pred Ch-hHcCCCCEEEccCCCcccChh--hcccCCCCEEEccCCcCCeEc---c------ccCCCCCEEECcCCCCceee---
Confidence 45 778888888888888887763 677788888888888777652 2 22567777777777777653
Q ss_pred CCCCCCCCEEEccCCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCCcccccCcccccCCCCCC
Q psy5670 241 FSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLI 320 (1269)
Q Consensus 241 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 320 (1269)
++++++|++|++++|.+++++ ++.+++|++|++++|+++.++ +..+++|++|++++|...+.. .+..+++|+
T Consensus 102 ~~~l~~L~~L~L~~N~l~~l~---~~~l~~L~~L~l~~N~l~~l~---l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~ 173 (457)
T 3bz5_A 102 VTPLTKLTYLNCDTNKLTKLD---VSQNPLLTYLNCARNTLTEID---VSHNTQLTELDCHLNKKITKL--DVTPQTQLT 173 (457)
T ss_dssp CTTCTTCCEEECCSSCCSCCC---CTTCTTCCEEECTTSCCSCCC---CTTCTTCCEEECTTCSCCCCC--CCTTCTTCC
T ss_pred cCCCCcCCEEECCCCcCCeec---CCCCCcCCEEECCCCccceec---cccCCcCCEEECCCCCccccc--ccccCCcCC
Confidence 666677777777777666652 566666666666666666553 345555555555555322211 134445555
Q ss_pred EEECcCCCCCccccCcccccCCCCccEEEcCCCCCcc
Q psy5670 321 VLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNK 357 (1269)
Q Consensus 321 ~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 357 (1269)
.|++++|.+++ ++ +..+++|+.|++++|.+++
T Consensus 174 ~L~ls~n~l~~--l~---l~~l~~L~~L~l~~N~l~~ 205 (457)
T 3bz5_A 174 TLDCSFNKITE--LD---VSQNKLLNRLNCDTNNITK 205 (457)
T ss_dssp EEECCSSCCCC--CC---CTTCTTCCEEECCSSCCSC
T ss_pred EEECCCCccce--ec---cccCCCCCEEECcCCcCCe
Confidence 55555554443 11 3344444444444444443
No 35
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.98 E-value=2e-31 Score=320.86 Aligned_cols=346 Identities=23% Similarity=0.293 Sum_probs=191.8
Q ss_pred CCcccEEEcCCCCCCccCcccCCCCCCCCEEEccCCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEE
Q psy5670 220 GINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVY 299 (1269)
Q Consensus 220 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~ 299 (1269)
+++|++|++++|.+++++ .++.+++|++|++++|.+++++ ++.+++|++|++++|+++.++ |..+++|++|+
T Consensus 41 l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N~l~~~~---~~~l~~L~~L~ 112 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDMT--GIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLN 112 (457)
T ss_dssp HTTCCEEECCSSCCCCCT--TGGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEE
T ss_pred cCCCCEEEccCCCcccCh--hhcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCCCCceee---cCCCCcCCEEE
Confidence 456777777777766664 3666677777777777666652 566666777777766666654 45666666666
Q ss_pred eeCCcccccCcccccCCCCCCEEECcCCCCCccccCcccccCCCCccEEEcCCCC-CcccCchhhcCCCCCcEEEccCCc
Q psy5670 300 LQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNK-MNKLDSSIFKDLYRLQVLHLENNQ 378 (1269)
Q Consensus 300 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~ 378 (1269)
+++|.+++++ ++.+++|+.|++++|.+++ + .+..+++|+.|++++|. +..+ .+..+++|++|++++|.
T Consensus 113 L~~N~l~~l~---~~~l~~L~~L~l~~N~l~~--l---~l~~l~~L~~L~l~~n~~~~~~---~~~~l~~L~~L~ls~n~ 181 (457)
T 3bz5_A 113 CDTNKLTKLD---VSQNPLLTYLNCARNTLTE--I---DVSHNTQLTELDCHLNKKITKL---DVTPQTQLTTLDCSFNK 181 (457)
T ss_dssp CCSSCCSCCC---CTTCTTCCEEECTTSCCSC--C---CCTTCTTCCEEECTTCSCCCCC---CCTTCTTCCEEECCSSC
T ss_pred CCCCcCCeec---CCCCCcCCEEECCCCccce--e---ccccCCcCCEEECCCCCccccc---ccccCCcCCEEECCCCc
Confidence 6666666642 5666666666666666654 2 25556666666666663 2222 24455566666666665
Q ss_pred ccccccccccCCCCCcEEEccCCcccccCcccccCCCCCCEEEccCCCCCccChhhhcCCCCCcEEEccCCCCCCchhhh
Q psy5670 379 IESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVL 458 (1269)
Q Consensus 379 l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l 458 (1269)
++.++ +..+++|+.|++++|+++++ .+..+++|+.|++++|++.+++ +..+++|+.|++++|.++.+| +
T Consensus 182 l~~l~---l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~ip---~~~l~~L~~L~l~~N~l~~~~--~ 250 (457)
T 3bz5_A 182 ITELD---VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEID---VTPLTQLTYFDCSVNPLTELD--V 250 (457)
T ss_dssp CCCCC---CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCC--C
T ss_pred cceec---cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccccC---ccccCCCCEEEeeCCcCCCcC--H
Confidence 55543 44555555555555555554 2444555555555555555532 444555555555555555444 2
Q ss_pred cCCCCCcEEECCCCCCCccChhhhhccccCCeeeccCCcC-CCCChhhhcCCCCCCEEEcCCCccccccccccCCCCCcc
Q psy5670 459 RNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNI-SNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLV 537 (1269)
Q Consensus 459 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l-~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~ 537 (1269)
..+++|+.|++++| +|+.|++++|.+ +.++ +..+++|+.|++++|...+.
T Consensus 251 ~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~---~~~l~~L~~L~Ls~n~~l~~------------ 301 (457)
T 3bz5_A 251 STLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ---AEGCRKIKELDVTHNTQLYL------------ 301 (457)
T ss_dssp TTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE---CTTCTTCCCCCCTTCTTCCE------------
T ss_pred HHCCCCCEEeccCC--------------CCCEEECCCCccCCccc---ccccccCCEEECCCCcccce------------
Confidence 34444555554443 233444444443 2222 23444555555555443222
Q ss_pred EEEcccccccccCCcCCCCCCCcEEEccCCcCccccccccCCCccEEECCCCCcccccccccccccccccEEEcCCCccc
Q psy5670 538 AIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLT 617 (1269)
Q Consensus 538 ~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~lp~~L~~L~Ls~n~l~~~~~~~~l~~~~~L~~LdLs~N~l~ 617 (1269)
+|. ..++|+.|++++| ++|+.|++++|+++.++ +..+++|+.|++++|+++
T Consensus 302 -----------l~~---~~~~L~~L~l~~~-----------~~L~~L~L~~N~l~~l~----l~~l~~L~~L~l~~N~l~ 352 (457)
T 3bz5_A 302 -----------LDC---QAAGITELDLSQN-----------PKLVYLYLNNTELTELD----VSHNTKLKSLSCVNAHIQ 352 (457)
T ss_dssp -----------EEC---TTCCCSCCCCTTC-----------TTCCEEECTTCCCSCCC----CTTCTTCSEEECCSSCCC
T ss_pred -----------ecc---CCCcceEechhhc-----------ccCCEEECCCCcccccc----cccCCcCcEEECCCCCCC
Confidence 221 1233333344433 24555666666655542 445667777777777777
Q ss_pred cccCCcccCCccEEEccCcccccccCCccCCCCCccEEEcCCCCccc
Q psy5670 618 ELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKN 664 (1269)
Q Consensus 618 ~~~~~~~~~~L~~L~Ls~N~i~~~~~~~f~~~~~L~~LdLs~N~l~~ 664 (1269)
++ ++|..|++++|.+++.. .+..|..+++++|++++
T Consensus 353 ~l------~~L~~L~l~~n~l~g~~-----~~~~l~~l~l~~N~l~g 388 (457)
T 3bz5_A 353 DF------SSVGKIPALNNNFEAEG-----QTITMPKETLTNNSLTI 388 (457)
T ss_dssp BC------TTGGGSSGGGTSEEEEE-----EEEECCCBCCBTTBEEE
T ss_pred Cc------cccccccccCCcEEecc-----eeeecCccccccCcEEE
Confidence 64 24566667777776651 33456667777777775
No 36
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=99.97 E-value=8.4e-33 Score=277.09 Aligned_cols=136 Identities=25% Similarity=0.483 Sum_probs=118.4
Q ss_pred CceeEEEEcccCCHHHHH-----------HHHHHhhhcCCCCceEEEecccCCCCCchhHHHHHHHHhcceEEEEecccc
Q psy5670 1083 KLFDAFVSYSSKDEAFVA-----------EELAPILENGDPAYKLCLHYREFPVGGYIGDTIVQAVESSRRTIMVLSENF 1151 (1269)
Q Consensus 1083 ~~yDafvsy~~~d~~~v~-----------~~l~~~Le~~~~~~~l~~~~rd~~~G~~~~~~i~~~i~~Sr~~i~vlS~~~ 1151 (1269)
|.|||||||+++|++||. +.+.+.||+ ++||++|+++||+.||+.+.++|.++|++|||+|+|+|++|
T Consensus 1 k~yDaFISy~~~D~~wv~~~~~~~~~fv~~ll~~~LE~-~~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y 79 (159)
T 1t3g_A 1 KDYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEK-HYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNY 79 (159)
T ss_dssp CCBSEEEECCCCC-------CCSHHHHHHTHHHHHHHH-TSCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHH
T ss_pred CCceEEEeCccccchhhhccchhhHHHHHHHHHHHHcC-CCCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccch
Confidence 579999999999976654 335567996 68999999999999999999999999999999999999999
Q ss_pred h-hhhhhHHHHHHHHHHHhcCC-CeEEEEEeCCCCCC---CCCHHHHHHHhcCceEEcCC-------cchHHHHHHhCCC
Q psy5670 1152 I-KSEWCRYEFKSAHHQVLRGK-KRLIVILLGEVPQK---DLDPDIRLYLKSNTYLQWGD-------KLFWEKLKFALPD 1219 (1269)
Q Consensus 1152 ~-~s~w~~~e~~~a~~~~~~~~-~~~i~i~~~~~~~~---~~~~~l~~~l~~~~~l~w~~-------~~Fw~~l~~~l~~ 1219 (1269)
+ +|+||.+|++.|++++++++ .+||+|+++++++. +..+.|+.+++++|||+|++ ++||++||||||.
T Consensus 80 ~~~S~wc~~El~~a~~~~~~~~~~~vI~I~~~~~~~~~~~~~~~~L~~~l~~~t~l~W~~p~~~~~~~~FW~~Lr~amP~ 159 (159)
T 1t3g_A 80 VVRRGWSIFELETRLRNMLVTGEIKVILIECSELRGIMNYQEVEALKHTIKLLTVIKWHGPKCNKLNSKFWKRLQYEMPF 159 (159)
T ss_dssp HHTTTTHHHHHSHHHHHHHHTTSSEEEEEECSCCCSHHHHHHHHHHHHTCSSEEEEECCSGGGGSSSCHHHHHHHHHSCC
T ss_pred hhcChHHHHHHHHHHHHHHhcCCCEEEEEEeccccccccccchHHHHHHHhhCCeEeCCCCcccchHHHHHHHHHHhCCC
Confidence 8 99999999999999998887 89999999999752 22357999999999999976 4999999999994
No 37
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=99.97 E-value=5.8e-33 Score=276.07 Aligned_cols=138 Identities=39% Similarity=0.731 Sum_probs=129.8
Q ss_pred CCCceeEEEEcccCCHHHHHHHHHHhhhcCCCCceEEEecccCCCCCchhHHHHHHHHhcceEEEEecccchhhhhhHHH
Q psy5670 1081 RDKLFDAFVSYSSKDEAFVAEELAPILENGDPAYKLCLHYREFPVGGYIGDTIVQAVESSRRTIMVLSENFIKSEWCRYE 1160 (1269)
Q Consensus 1081 ~~~~yDafvsy~~~d~~~v~~~l~~~Le~~~~~~~l~~~~rd~~~G~~~~~~i~~~i~~Sr~~i~vlS~~~~~s~w~~~e 1160 (1269)
+++.|||||||+++|++||.++|.+.||++++||++|+++||+.||+.+.++|.++|++||++|+|+|++|++|+||.+|
T Consensus 2 ~~~~yDvFiSy~~~D~~~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~~E 81 (149)
T 1fyx_A 2 RNIXYDAFVSYSERDAYWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXKYE 81 (149)
T ss_dssp CSCCEEEEEECCGGGHHHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHHHH
T ss_pred CCccceEEEECCcccHHHHHHHHHHHHhcCCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccchHHHH
Confidence 46899999999999999999889999997557999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCC-CeEEEEEeCCCCCCCCC---HHHHHHHhcCceEEcCC-----cchHHHHHHhCC
Q psy5670 1161 FKSAHHQVLRGK-KRLIVILLGEVPQKDLD---PDIRLYLKSNTYLQWGD-----KLFWEKLKFALP 1218 (1269)
Q Consensus 1161 ~~~a~~~~~~~~-~~~i~i~~~~~~~~~~~---~~l~~~l~~~~~l~w~~-----~~Fw~~l~~~l~ 1218 (1269)
++.|++++++++ .++|+|++++++++.+| ++|+.+++++|||+|++ ++||++||+||.
T Consensus 82 l~~a~~~~~~~~~~~vIpv~~~~i~~~~~p~~~~~Lr~~l~~~t~l~W~~~~~~~~~FW~~Lr~al~ 148 (149)
T 1fyx_A 82 LDFSHFRLFDENNDAAILILLEPIEKKAIPQRFXKLRKIMNTKTYLEWPMDEAQREGFWVNLRAAIK 148 (149)
T ss_dssp SCCSCCTTCGGGTTCCEEEESSCCCTTTSCSSCHHHHHHHHHTCSEECCSSGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEEEecCCChhhcChHHHHHHHHhcCCCEEECCCCCccchHHHHHHHHHhc
Confidence 999998887766 89999999999998887 58999999999999987 699999999985
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=2.3e-30 Score=306.95 Aligned_cols=310 Identities=22% Similarity=0.318 Sum_probs=152.3
Q ss_pred CCCCEEEccCCCCccCCcccCCCCCCCcEEECCCCCCCCCCccccCCCCcccCCCcccEEEcCCCCCCccCcccCCCCCC
Q psy5670 167 QSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSR 246 (1269)
Q Consensus 167 ~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 246 (1269)
++|++|+++++.+..+|...|..+++|++|++++|++.++++..|.. +++|++|++++|.++.+++..|+++++
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~------l~~L~~L~L~~n~l~~~~~~~~~~l~~ 118 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAY------AHTIQKLYMGFNAIRYLPPHVFQNVPL 118 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTT------CTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccC------CCCcCEEECCCCCCCcCCHHHhcCCCC
Confidence 44444555544444444444444444444444444444333322222 234444444444444444444444444
Q ss_pred CCEEEccCCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCCcccccCcccccCCCCCCEEECcC
Q psy5670 247 LQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSN 326 (1269)
Q Consensus 247 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 326 (1269)
|++|++++|.++.+++..|.++++|++|++++|++..+++..|..+++|++|++++|.++++. +..+++|+.|++++
T Consensus 119 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~~ 195 (390)
T 3o6n_A 119 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSY 195 (390)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSEEECCS
T ss_pred CCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc---cccccccceeeccc
Confidence 444444444444444333444444444444444444444444444444444444444444332 23344444444444
Q ss_pred CCCCccccCcccccCCCCccEEEcCCCCCcccCchhhcCCCCCcEEEccCCcccccccccccCCCCCcEEEccCCccccc
Q psy5670 327 NELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRI 406 (1269)
Q Consensus 327 n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~ 406 (1269)
|.+.. +...++ |++|++++|.+..++.. ..++|+.|++++|.+++.
T Consensus 196 n~l~~-------~~~~~~------------------------L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~n~l~~~ 241 (390)
T 3o6n_A 196 NLLST-------LAIPIA------------------------VEELDASHNSINVVRGP---VNVELTILKLQHNNLTDT 241 (390)
T ss_dssp SCCSE-------EECCSS------------------------CSEEECCSSCCCEEECC---CCSSCCEEECCSSCCCCC
T ss_pred ccccc-------cCCCCc------------------------ceEEECCCCeeeecccc---ccccccEEECCCCCCccc
Confidence 44332 111123 33333333333333221 123444444444444443
Q ss_pred CcccccCCCCCCEEEccCCCCCccChhhhcCCCCCcEEEccCCCCCCchhhhcCCCCCcEEECCCCCCCccChhhhhccc
Q psy5670 407 ESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLH 486 (1269)
Q Consensus 407 ~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~ 486 (1269)
..+..+++|++|++++|.+.++.+..|..+++|++|++++|.++.+|..+..+++|++|++++|.++++++ .+..++
T Consensus 242 --~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~l~ 318 (390)
T 3o6n_A 242 --AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVER-NQPQFD 318 (390)
T ss_dssp --GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCCCCGG-GHHHHT
T ss_pred --HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcceecCc-cccccC
Confidence 23445555555555555555555555555666666666666666555555556666666666666665433 355666
Q ss_pred cCCeeeccCCcCCCCChhhhcCCCCCCEEEcCCCccccc
Q psy5670 487 QLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKV 525 (1269)
Q Consensus 487 ~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~ 525 (1269)
+|+.|++++|.+..++ +..+++|+.|++++|++...
T Consensus 319 ~L~~L~L~~N~i~~~~---~~~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 319 RLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp TCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHH
T ss_pred cCCEEECCCCccceeC---chhhccCCEEEcCCCCccch
Confidence 6777777777766654 45667777777777776543
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=4.1e-30 Score=304.88 Aligned_cols=308 Identities=21% Similarity=0.310 Sum_probs=235.3
Q ss_pred CcccEEEcCCCCCCccCcccCCCCCCCCEEEccCCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEe
Q psy5670 221 INLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYL 300 (1269)
Q Consensus 221 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L 300 (1269)
.+++.|++++|.++.+++..|.++++|++|++++|.+..+.+.+|.++++|++|++++|.++.+++..|..+++|++|++
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 124 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 124 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence 45666666666666666555566666666666666666666556666666666666666666666666666666666666
Q ss_pred eCCcccccCcccccCCCCCCEEECcCCCCCccccCcccccCCCCccEEEcCCCCCcccCchhhcCCCCCcEEEccCCccc
Q psy5670 301 QNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIE 380 (1269)
Q Consensus 301 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 380 (1269)
++|.++.+++..|.++++|++|++++|.+.. +.+..+.++++|+.|++++|.++.++ +..+++|+.|++++|.++
T Consensus 125 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~~n~l~ 199 (390)
T 3o6n_A 125 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLER--IEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLS 199 (390)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCB--CCTTTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSEEECCSSCCS
T ss_pred CCCccCcCCHHHhcCCCCCcEEECCCCccCc--cChhhccCCCCCCEEECCCCcCCccc---cccccccceeeccccccc
Confidence 6666666666556666666666666666655 44555666777777777777766654 445678888888888877
Q ss_pred ccccccccCCCCCcEEEccCCcccccCcccccCCCCCCEEEccCCCCCccChhhhcCCCCCcEEEccCCCCCCc-hhhhc
Q psy5670 381 SIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEI-PKVLR 459 (1269)
Q Consensus 381 ~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l-p~~l~ 459 (1269)
.+. ..++|+.|++++|.+..+... ..++|+.|++++|.+.+. ..+..+++|++|++++|.++.+ |..+.
T Consensus 200 ~~~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 269 (390)
T 3o6n_A 200 TLA-----IPIAVEELDASHNSINVVRGP---VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFV 269 (390)
T ss_dssp EEE-----CCSSCSEEECCSSCCCEEECC---CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGT
T ss_pred ccC-----CCCcceEEECCCCeeeecccc---ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHcc
Confidence 553 346899999999999887543 347899999999999986 4688999999999999999976 67889
Q ss_pred CCCCCcEEECCCCCCCccChhhhhccccCCeeeccCCcCCCCChhhhcCCCCCCEEEcCCCccccccccccCCCCCccEE
Q psy5670 460 NLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAI 539 (1269)
Q Consensus 460 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L 539 (1269)
.+++|++|++++|.+++++. .+..+++|+.|++++|.+..++.. +..+++|+.|++++|+++.++ +..+++|+.|
T Consensus 270 ~l~~L~~L~L~~n~l~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~-~~~l~~L~~L~L~~N~i~~~~---~~~~~~L~~L 344 (390)
T 3o6n_A 270 KMQRLERLYISNNRLVALNL-YGQPIPTLKVLDLSHNHLLHVERN-QPQFDRLENLYLDHNSIVTLK---LSTHHTLKNL 344 (390)
T ss_dssp TCSSCCEEECCSSCCCEEEC-SSSCCTTCCEEECCSSCCCCCGGG-HHHHTTCSEEECCSSCCCCCC---CCTTCCCSEE
T ss_pred ccccCCEEECCCCcCcccCc-ccCCCCCCCEEECCCCcceecCcc-ccccCcCCEEECCCCccceeC---chhhccCCEE
Confidence 99999999999999998754 456789999999999999988765 678899999999999998875 6678899999
Q ss_pred Ecccccccc
Q psy5670 540 RLDGNYLTD 548 (1269)
Q Consensus 540 ~L~~n~l~~ 548 (1269)
++++|.+..
T Consensus 345 ~l~~N~~~~ 353 (390)
T 3o6n_A 345 TLSHNDWDC 353 (390)
T ss_dssp ECCSSCEEH
T ss_pred EcCCCCccc
Confidence 999999874
No 40
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=1.6e-29 Score=294.96 Aligned_cols=283 Identities=26% Similarity=0.412 Sum_probs=135.1
Q ss_pred CCCCCCcEEECCCCCCCCCCccccCCCCcccCCCcccEEEcCCCCCCccCcccCCCCCCCCEEEccCCCCcccchhhhcC
Q psy5670 188 CPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDG 267 (1269)
Q Consensus 188 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 267 (1269)
..+++|++|+++++.+..++. + ..+++|++|++++|.++.+++ +.++++|++|++++|.++.+. ++.+
T Consensus 41 ~~l~~L~~L~l~~~~i~~~~~--~------~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~~--~~~~ 108 (347)
T 4fmz_A 41 EELESITKLVVAGEKVASIQG--I------EYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDIS--ALQN 108 (347)
T ss_dssp HHHTTCSEEECCSSCCCCCTT--G------GGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG--GGTT
T ss_pred hhcccccEEEEeCCccccchh--h------hhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCch--HHcC
Confidence 355666777777666655432 1 224566666666666666544 666666666666666665542 3566
Q ss_pred CCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCCcccccCcccccCCCCCCEEECcCCCCCccccCcccccCCCCccE
Q psy5670 268 LNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVV 347 (1269)
Q Consensus 268 l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~ 347 (1269)
+++|++|++++|.+..+++ +..+++|++|++++|......+. +..+++|+.|++++|.+.. ...+..+++|+.
T Consensus 109 l~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~----~~~~~~l~~L~~ 181 (347)
T 4fmz_A 109 LTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKD----VTPIANLTDLYS 181 (347)
T ss_dssp CTTCSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCC----CGGGGGCTTCSE
T ss_pred CCcCCEEECcCCcccCchh--hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCC----chhhccCCCCCE
Confidence 6666666666666655544 45555566666655533322221 4555555555555555443 112444455555
Q ss_pred EEcCCCCCcccCchhhcCCCCCcEEEccCCcccccccccccCCCCCcEEEccCCcccccCcccccCCCCCCEEEccCCCC
Q psy5670 348 LNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNEL 427 (1269)
Q Consensus 348 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i 427 (1269)
|++++|.+.++.+ +..+++|+.|++++|.+..+.. +..+++|+.|++++|++++..+ +..+++|++|++++|.+
T Consensus 182 L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l 255 (347)
T 4fmz_A 182 LSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQI 255 (347)
T ss_dssp EECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred EEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCcc
Confidence 5555554444332 3444444444444444444332 3344444444444444443332 33344444444444444
Q ss_pred CccChhhhcCCCCCcEEEccCCCCCCchhhhcCCCCCcEEECCCCCCCccChhhhhccccCCeeeccCCcC
Q psy5670 428 EYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNI 498 (1269)
Q Consensus 428 ~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l 498 (1269)
..+ ..+..+++|++|++++|.++.++ .+..+++|++|++++|.+++..+..+..+++|+.|++++|++
T Consensus 256 ~~~--~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 323 (347)
T 4fmz_A 256 SDI--NAVKDLTKLKMLNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHI 323 (347)
T ss_dssp CCC--GGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSC
T ss_pred CCC--hhHhcCCCcCEEEccCCccCCCh-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCcc
Confidence 333 12333344444444444433332 233333333333333333333333333333333333333333
No 41
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=2.1e-29 Score=293.90 Aligned_cols=305 Identities=26% Similarity=0.423 Sum_probs=222.2
Q ss_pred hcCCCCCEEEccCCCCccCCcccCCCCCCCcEEECCCCCCCCCCccccCCCCcccCCCcccEEEcCCCCCCccCcccCCC
Q psy5670 164 DELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSR 243 (1269)
Q Consensus 164 ~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 243 (1269)
..+++|++|+++++.+..++. +..+++|++|++++|+++++++ +. .+++|++|++++|.++.++ .+.+
T Consensus 41 ~~l~~L~~L~l~~~~i~~~~~--~~~~~~L~~L~l~~n~i~~~~~--~~------~l~~L~~L~L~~n~i~~~~--~~~~ 108 (347)
T 4fmz_A 41 EELESITKLVVAGEKVASIQG--IEYLTNLEYLNLNGNQITDISP--LS------NLVKLTNLYIGTNKITDIS--ALQN 108 (347)
T ss_dssp HHHTTCSEEECCSSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG--GT------TCTTCCEEECCSSCCCCCG--GGTT
T ss_pred hhcccccEEEEeCCccccchh--hhhcCCccEEEccCCccccchh--hh------cCCcCCEEEccCCcccCch--HHcC
Confidence 567788888888887777764 6777888888888887776654 32 3577888888888777763 4777
Q ss_pred CCCCCEEEccCCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCCcccccCcccccCCCCCCEEE
Q psy5670 244 LSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLD 323 (1269)
Q Consensus 244 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 323 (1269)
+++|++|++++|.+..+.+ +..+++|+.|++++|......+. +..+++|++|++++|.+.++.+ +..+++|+.|+
T Consensus 109 l~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~ 183 (347)
T 4fmz_A 109 LTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLS 183 (347)
T ss_dssp CTTCSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEE
T ss_pred CCcCCEEECcCCcccCchh--hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCCchh--hccCCCCCEEE
Confidence 8888888888888777654 77788888888888754433333 6777888888888887777654 67778888888
Q ss_pred CcCCCCCccccCcccccCCCCccEEEcCCCCCcccCchhhcCCCCCcEEEccCCcccccccccccCCCCCcEEEccCCcc
Q psy5670 324 LSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKL 403 (1269)
Q Consensus 324 L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l 403 (1269)
+++|.+.+ + ..+..+++|+.|++++|.+....+ +..+++|++|++++|.++.+++ +..+++|+.|++++|.+
T Consensus 184 l~~n~l~~--~--~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l 255 (347)
T 4fmz_A 184 LNYNQIED--I--SPLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQI 255 (347)
T ss_dssp CTTSCCCC--C--GGGGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred ccCCcccc--c--ccccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCcc
Confidence 88887765 2 236777788888888887776655 6677788888888888777665 67778888888888877
Q ss_pred cccCcccccCCCCCCEEEccCCCCCccChhhhcCCCCCcEEEccCCCCCCc-hhhhcCCCCCcEEECCCCCCCccChhhh
Q psy5670 404 KRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEI-PKVLRNLHSLKTLDLGDNLITEINNLSL 482 (1269)
Q Consensus 404 ~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~Ls~n~i~~~~~~~~ 482 (1269)
+++ ..+..+++|+.|++++|.+.++ ..+..+++|+.|++++|.++.. |..+..+++|++|++++|.++++.+ +
T Consensus 256 ~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~ 329 (347)
T 4fmz_A 256 SDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--L 329 (347)
T ss_dssp CCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--G
T ss_pred CCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--h
Confidence 765 3467777888888888877776 3467778888888888877754 3557777888888888888777765 6
Q ss_pred hccccCCeeeccCCcCC
Q psy5670 483 NSLHQLAGLRLTENNIS 499 (1269)
Q Consensus 483 ~~l~~L~~L~Ls~n~l~ 499 (1269)
..+++|+.|++++|.++
T Consensus 330 ~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 330 ASLSKMDSADFANQVIK 346 (347)
T ss_dssp GGCTTCSEESSSCC---
T ss_pred hhhhccceeehhhhccc
Confidence 66777777777777653
No 42
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=2e-29 Score=315.65 Aligned_cols=310 Identities=22% Similarity=0.319 Sum_probs=169.2
Q ss_pred CCCCEEEccCCCCccCCcccCCCCCCCcEEECCCCCCCCCCccccCCCCcccCCCcccEEEcCCCCCCccCcccCCCCCC
Q psy5670 167 QSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSR 246 (1269)
Q Consensus 167 ~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 246 (1269)
++++.|++++|.+..+|+..|..+++|++|+|++|.+.++++..|.. +++|++|+|++|.++.+++..|+++++
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~------l~~L~~L~L~~n~l~~~~~~~~~~l~~ 124 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAY------AHTIQKLYMGFNAIRYLPPHVFQNVPL 124 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTT------CTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcC------CCCCCEEECCCCcCCCCCHHHHcCCCC
Confidence 44445555555555555544444444444444444444433333222 234444444444444444444444444
Q ss_pred CCEEEccCCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCCcccccCcccccCCCCCCEEECcC
Q psy5670 247 LQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSN 326 (1269)
Q Consensus 247 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 326 (1269)
|++|+|++|.++.+++..|.++++|++|+|++|.++.+++..|..+++|+.|++++|.++++. +..+++|+.|++++
T Consensus 125 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~ 201 (597)
T 3oja_B 125 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSY 201 (597)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCS
T ss_pred CCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhccc
Confidence 444444444444444444444444444444444444444444444444444444444444432 23344444555544
Q ss_pred CCCCccccCcccccCCCCccEEEcCCCCCcccCchhhcCCCCCcEEEccCCcccccccccccCCCCCcEEEccCCccccc
Q psy5670 327 NELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRI 406 (1269)
Q Consensus 327 n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~ 406 (1269)
|.+.+ +.... +|+.|++++|.+..++... .++|+.|++++|.+++.
T Consensus 202 n~l~~-------l~~~~------------------------~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~~ 247 (597)
T 3oja_B 202 NLLST-------LAIPI------------------------AVEELDASHNSINVVRGPV---NVELTILKLQHNNLTDT 247 (597)
T ss_dssp SCCSE-------EECCT------------------------TCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCCC
T ss_pred Ccccc-------ccCCc------------------------hhheeeccCCccccccccc---CCCCCEEECCCCCCCCC
Confidence 44332 11122 3444444444444333221 13455555555555543
Q ss_pred CcccccCCCCCCEEEccCCCCCccChhhhcCCCCCcEEEccCCCCCCchhhhcCCCCCcEEECCCCCCCccChhhhhccc
Q psy5670 407 ESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLH 486 (1269)
Q Consensus 407 ~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~ 486 (1269)
..+..+++|+.|+|++|.+.++.+..|..+++|+.|+|++|.++.+|..+..+++|++|+|++|.++.++. .+..++
T Consensus 248 --~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~-~~~~l~ 324 (597)
T 3oja_B 248 --AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVER-NQPQFD 324 (597)
T ss_dssp --GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCCCCGG-GHHHHT
T ss_pred --hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCCccCc-ccccCC
Confidence 34556666666666666666666666677777777777777777776666667777888888877776543 456778
Q ss_pred cCCeeeccCCcCCCCChhhhcCCCCCCEEEcCCCccccc
Q psy5670 487 QLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKV 525 (1269)
Q Consensus 487 ~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~ 525 (1269)
+|+.|+|++|.+..++ +..+++|+.|++++|++...
T Consensus 325 ~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 325 RLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp TCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHH
T ss_pred CCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCCh
Confidence 8888888888887665 56778899999999987654
No 43
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.96 E-value=5.9e-29 Score=311.30 Aligned_cols=308 Identities=21% Similarity=0.310 Sum_probs=243.8
Q ss_pred CcccEEEcCCCCCCccCcccCCCCCCCCEEEccCCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEe
Q psy5670 221 INLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYL 300 (1269)
Q Consensus 221 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L 300 (1269)
.+++.|++++|.+..+++..|.++++|+.|++++|.++++.+..|.++++|++|+|++|.++.+++..|..+++|++|+|
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 130 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 130 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence 45666667766666666666666777777777777777766666777777777777777777777666677777777777
Q ss_pred eCCcccccCcccccCCCCCCEEECcCCCCCccccCcccccCCCCccEEEcCCCCCcccCchhhcCCCCCcEEEccCCccc
Q psy5670 301 QNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIE 380 (1269)
Q Consensus 301 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 380 (1269)
++|.++++++..|+++++|+.|++++|.+.+ +.+..|.++++|+.|++++|.++.++ +..+++|+.|++++|.++
T Consensus 131 ~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~ 205 (597)
T 3oja_B 131 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLER--IEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLS 205 (597)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCB--CCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCS
T ss_pred eCCCCCCCCHHHhccCCCCCEEEeeCCcCCC--CChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccc
Confidence 7777777766666777777777777777765 44556777777777777777777664 445678899999998887
Q ss_pred ccccccccCCCCCcEEEccCCcccccCcccccCCCCCCEEEccCCCCCccChhhhcCCCCCcEEEccCCCCCCc-hhhhc
Q psy5670 381 SIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEI-PKVLR 459 (1269)
Q Consensus 381 ~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l-p~~l~ 459 (1269)
.+. ..++|+.|++++|.+..+.... .++|+.|+|++|.+.+. ..+..+++|+.|+|++|.++.+ |..+.
T Consensus 206 ~l~-----~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~ 275 (597)
T 3oja_B 206 TLA-----IPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFV 275 (597)
T ss_dssp EEE-----CCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGT
T ss_pred ccc-----CCchhheeeccCCccccccccc---CCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHhc
Confidence 653 4568999999999998776533 36899999999999985 5688999999999999999976 67899
Q ss_pred CCCCCcEEECCCCCCCccChhhhhccccCCeeeccCCcCCCCChhhhcCCCCCCEEEcCCCccccccccccCCCCCccEE
Q psy5670 460 NLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAI 539 (1269)
Q Consensus 460 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L 539 (1269)
.+++|++|+|++|.+++++. .+..+++|+.|+|++|.+..++.. +..+++|+.|+|++|++++++ +..+++|+.|
T Consensus 276 ~l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~Ls~N~l~~i~~~-~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L 350 (597)
T 3oja_B 276 KMQRLERLYISNNRLVALNL-YGQPIPTLKVLDLSHNHLLHVERN-QPQFDRLENLYLDHNSIVTLK---LSTHHTLKNL 350 (597)
T ss_dssp TCSSCCEEECTTSCCCEEEC-SSSCCTTCCEEECCSSCCCCCGGG-HHHHTTCSEEECCSSCCCCCC---CCTTCCCSEE
T ss_pred CccCCCEEECCCCCCCCCCc-ccccCCCCcEEECCCCCCCccCcc-cccCCCCCEEECCCCCCCCcC---hhhcCCCCEE
Confidence 99999999999999999754 456789999999999999988865 688999999999999998875 5667899999
Q ss_pred Ecccccccc
Q psy5670 540 RLDGNYLTD 548 (1269)
Q Consensus 540 ~L~~n~l~~ 548 (1269)
++++|.+..
T Consensus 351 ~l~~N~~~~ 359 (597)
T 3oja_B 351 TLSHNDWDC 359 (597)
T ss_dssp ECCSSCEEH
T ss_pred EeeCCCCCC
Confidence 999999874
No 44
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=1.6e-28 Score=295.79 Aligned_cols=278 Identities=22% Similarity=0.296 Sum_probs=208.7
Q ss_pred EEEccCCcCccccccccCCCccEEECCCCCcccccccccccccccccEEEcCCCccccccCCccc--CCccEEEccCccc
Q psy5670 561 WLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIP--HSVENLFLTNNLI 638 (1269)
Q Consensus 561 ~L~Ls~n~l~~~~~~~lp~~L~~L~Ls~n~l~~~~~~~~l~~~~~L~~LdLs~N~l~~~~~~~~~--~~L~~L~Ls~N~i 638 (1269)
.++.+++.++.++. .+|+.++.|+|++|+++.++. ..+..+++|++|+|++|+|+++.+..+. .+|++|+|++|++
T Consensus 47 ~v~c~~~~l~~iP~-~~~~~l~~L~L~~n~i~~~~~-~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l 124 (440)
T 3zyj_A 47 KVICVRKNLREVPD-GISTNTRLLNLHENQIQIIKV-NSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL 124 (440)
T ss_dssp EEECCSCCCSSCCS-CCCTTCSEEECCSCCCCEECT-TTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCC
T ss_pred EEEeCCCCcCcCCC-CCCCCCcEEEccCCcCCeeCH-HHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcC
Confidence 33334444433332 233455555555555555443 1244566777777777777776655443 4777777777777
Q ss_pred ccccCCccCCCCCccEEEcCCCCcccccccccccccCCCCCCCCceEecCCccccccCChhHHhhccccccCCCcccccC
Q psy5670 639 SKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHKNIPDFYIGENPFQCDCNMQWLQSYSVNKERNKPNLVDLD 718 (1269)
Q Consensus 639 ~~~~~~~f~~~~~L~~LdLs~N~l~~l~~~~~~~~~~~~~~~l~~l~l~~Np~~c~c~~~~l~~~~~~~~~~~~~~~~l~ 718 (1269)
+.+.+..|..+++|+.|+|++|+|+.++...+. .+
T Consensus 125 ~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~-----~l---------------------------------------- 159 (440)
T 3zyj_A 125 TTIPNGAFVYLSKLKELWLRNNPIESIPSYAFN-----RI---------------------------------------- 159 (440)
T ss_dssp SSCCTTTSCSCSSCCEEECCSCCCCEECTTTTT-----TC----------------------------------------
T ss_pred CeeCHhHhhccccCceeeCCCCcccccCHHHhh-----hC----------------------------------------
Confidence 777777777778888888887777655432220 11
Q ss_pred ccccccccccCCCcccccccCCCccccccccCcccccccccCCCCcccCCCCCCceecCCCCCcceeeecCCCCccccCC
Q psy5670 719 TVTCKLLYNRANPAILLKEAHSNQFLCEYETNCAPLCHCCDFDACDCEMTCPNNCTCYHDVSWEANVIDCSTGGYDNQLP 798 (1269)
Q Consensus 719 ~~~c~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cp~~C~c~~~~~~~~~~v~c~~~~l~~~~p 798 (1269)
T Consensus 160 -------------------------------------------------------------------------------- 159 (440)
T 3zyj_A 160 -------------------------------------------------------------------------------- 159 (440)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCcEEEecC-CCCCCcCCCcCCCCCCccEEEccCcCccccccccccCCCCCCEEeCCCCCCcccCcccccCCccc
Q psy5670 799 PRIPMDATELYLDG-NRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENL 877 (1269)
Q Consensus 799 ~~~p~~~~~l~l~~-n~i~~l~~~~f~~~~~L~~L~l~~n~i~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L 877 (1269)
.++++|++++ |.+..++...|.++++|+.|+|++|+++.++ .|..+++|+.|+|++|+|+.+.+..|.++++|
T Consensus 160 ----~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 233 (440)
T 3zyj_A 160 ----PSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP--NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHL 233 (440)
T ss_dssp ----TTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC--CCTTCSSCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred ----cccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc--ccCCCcccCEEECCCCccCccChhhhccCccC
Confidence 1235566666 5666777778888999999999999999886 48889999999999999999999999999999
Q ss_pred CeeecccccCcccChhhhhcCcccceEeccCccceeeecc-c-ccCCccEEEeeCCcccccCCcHHHHHHHHHhccCCcC
Q psy5670 878 RELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVW-H-LSSQIQSITLTSNPWSCDCDFTEKFRDYLQRSRSSVH 955 (1269)
Q Consensus 878 ~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~-~-~~~~l~~l~l~~Np~~C~C~~~~~~~~w~~~~~~~i~ 955 (1269)
++|+|++|+|+.+++..|.++++|+.|+|++|+|+.+++. | .+++|+.|+|++|||.|||++ .||.+|+++.. ...
T Consensus 234 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l-~~l~~~~~~~~-~~~ 311 (440)
T 3zyj_A 234 QKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDI-LWLSWWIKDMA-PSN 311 (440)
T ss_dssp CEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSSTT-HHHHHHHHTTS-CSS
T ss_pred CEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCCc-hHHHHHHHhcc-ccC
Confidence 9999999999999999999999999999999999999988 6 789999999999999999996 79999998753 222
Q ss_pred ccCcceeccCCccceeee
Q psy5670 956 DISQIRCMTGSEVGFTIM 973 (1269)
Q Consensus 956 ~~~~~~C~~p~~~~~~~~ 973 (1269)
....++|..|+..+|..+
T Consensus 312 ~~~~~~C~~P~~l~g~~l 329 (440)
T 3zyj_A 312 TACCARCNTPPNLKGRYI 329 (440)
T ss_dssp CSCCCBEEESTTTTTCBC
T ss_pred CccccCCCChhHhcCccH
Confidence 345689999998876433
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=4e-28 Score=280.71 Aligned_cols=291 Identities=25% Similarity=0.398 Sum_probs=190.0
Q ss_pred CCCcEEECCCCCCCCCCccccCCCCcccCCCcccEEEcCCCCCCccCcccCCCCCCCCEEEccCCCCcccchhhhcCCCC
Q psy5670 191 QSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNS 270 (1269)
Q Consensus 191 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 270 (1269)
.+++.++++++.+..++... .++|+.|++++|.++.+++..|.++++|++|++++|.++++.+..|.++++
T Consensus 31 c~l~~l~~~~~~l~~lp~~~---------~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 101 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKDL---------PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVK 101 (330)
T ss_dssp EETTEEECTTSCCCSCCCSC---------CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTT
T ss_pred CCCeEEEecCCCccccCccC---------CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCC
Confidence 36777888777777654321 246777888888877777767777788888888877777777777777777
Q ss_pred CcEEEccCCCCCCCCcccccCCCCCcEEEeeCCcccccCcccccCCCCCCEEECcCCCCCccccCcccccCCCCccEEEc
Q psy5670 271 LTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNI 350 (1269)
Q Consensus 271 L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L 350 (1269)
|++|++++|+++.+|...+ ++|++|++++|.++++.+..|.++++|+.|++++|.+.........
T Consensus 102 L~~L~Ls~n~l~~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~------------ 166 (330)
T 1xku_A 102 LERLYLSKNQLKELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGA------------ 166 (330)
T ss_dssp CCEEECCSSCCSBCCSSCC---TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTG------------
T ss_pred CCEEECCCCcCCccChhhc---ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhh------------
Confidence 7777777777777766543 5677777777777776666666677777777776666432222333
Q ss_pred CCCCCcccCchhhcCCCCCcEEEccCCcccccccccccCCCCCcEEEccCCcccccCcccccCCCCCCEEEccCCCCCcc
Q psy5670 351 AYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYI 430 (1269)
Q Consensus 351 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~ 430 (1269)
+..+++|++|++++|.++.++...+ ++|+.|++++|+++++.+..+..+++|+.|++++|.+.++
T Consensus 167 ------------~~~l~~L~~L~l~~n~l~~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 231 (330)
T 1xku_A 167 ------------FQGMKKLSYIRIADTNITTIPQGLP---PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAV 231 (330)
T ss_dssp ------------GGGCTTCCEEECCSSCCCSCCSSCC---TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEE
T ss_pred ------------ccCCCCcCEEECCCCccccCCcccc---ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCcee
Confidence 4444455555555555554443222 5666666666666666666666777777777777777777
Q ss_pred ChhhhcCCCCCcEEEccCCCCCCchhhhcCCCCCcEEECCCCCCCccChhhhhcc------ccCCeeeccCCcCC--CCC
Q psy5670 431 EENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSL------HQLAGLRLTENNIS--NIS 502 (1269)
Q Consensus 431 ~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l------~~L~~L~Ls~n~l~--~i~ 502 (1269)
.+..+..+++|++|++++|.++.+|..+..+++|++|++++|.++++....|... ..|+.|++++|++. .++
T Consensus 232 ~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~ 311 (330)
T 1xku_A 232 DNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQ 311 (330)
T ss_dssp CTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSC
T ss_pred ChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccC
Confidence 6667777788888888888888888777778888888888888887776555322 34445555555542 233
Q ss_pred hhhhcCCCCCCEEEcCCC
Q psy5670 503 KGVFEKLSVLTILNLASN 520 (1269)
Q Consensus 503 ~~~f~~l~~L~~L~Ls~n 520 (1269)
+..|..+.+|+.++|++|
T Consensus 312 ~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 312 PSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp GGGGTTCCCGGGEEC---
T ss_pred ccccccccceeEEEeccc
Confidence 344444444444444444
No 46
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=3.7e-28 Score=293.71 Aligned_cols=276 Identities=21% Similarity=0.289 Sum_probs=208.0
Q ss_pred EEEccCCcCccccccccCCCccEEECCCCCcccccccccccccccccEEEcCCCccccccCCccc--CCccEEEccCccc
Q psy5670 561 WLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIP--HSVENLFLTNNLI 638 (1269)
Q Consensus 561 ~L~Ls~n~l~~~~~~~lp~~L~~L~Ls~n~l~~~~~~~~l~~~~~L~~LdLs~N~l~~~~~~~~~--~~L~~L~Ls~N~i 638 (1269)
.++.++..++.++. .+|+.++.|+|++|+|+.++. ..+..+++|+.|+|++|+|+++.+..+. .+|++|+|++|++
T Consensus 58 ~v~c~~~~l~~iP~-~~~~~l~~L~L~~n~i~~~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l 135 (452)
T 3zyi_A 58 KVVCTRRGLSEVPQ-GIPSNTRYLNLMENNIQMIQA-DTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL 135 (452)
T ss_dssp EEECCSSCCSSCCS-CCCTTCSEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred EEEECCCCcCccCC-CCCCCccEEECcCCcCceECH-HHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcC
Confidence 33444444443331 234455566666666555433 1234567778888888877777655443 4777888888887
Q ss_pred ccccCCccCCCCCccEEEcCCCCcccccccccccccCCCCCCCCceEecCCccccccCChhHHhhccccccCCCcccccC
Q psy5670 639 SKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHKNIPDFYIGENPFQCDCNMQWLQSYSVNKERNKPNLVDLD 718 (1269)
Q Consensus 639 ~~~~~~~f~~~~~L~~LdLs~N~l~~l~~~~~~~~~~~~~~~l~~l~l~~Np~~c~c~~~~l~~~~~~~~~~~~~~~~l~ 718 (1269)
+++.+..|..+++|+.|+|++|+|+.++...+. .+
T Consensus 136 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-----~l---------------------------------------- 170 (452)
T 3zyi_A 136 TVIPSGAFEYLSKLRELWLRNNPIESIPSYAFN-----RV---------------------------------------- 170 (452)
T ss_dssp SBCCTTTSSSCTTCCEEECCSCCCCEECTTTTT-----TC----------------------------------------
T ss_pred CccChhhhcccCCCCEEECCCCCcceeCHhHHh-----cC----------------------------------------
Confidence 777777777778888888888777655432220 11
Q ss_pred ccccccccccCCCcccccccCCCccccccccCcccccccccCCCCcccCCCCCCceecCCCCCcceeeecCCCCccccCC
Q psy5670 719 TVTCKLLYNRANPAILLKEAHSNQFLCEYETNCAPLCHCCDFDACDCEMTCPNNCTCYHDVSWEANVIDCSTGGYDNQLP 798 (1269)
Q Consensus 719 ~~~c~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cp~~C~c~~~~~~~~~~v~c~~~~l~~~~p 798 (1269)
T Consensus 171 -------------------------------------------------------------------------------- 170 (452)
T 3zyi_A 171 -------------------------------------------------------------------------------- 170 (452)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCcEEEecC-CCCCCcCCCcCCCCCCccEEEccCcCccccccccccCCCCCCEEeCCCCCCcccCcccccCCccc
Q psy5670 799 PRIPMDATELYLDG-NRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENL 877 (1269)
Q Consensus 799 ~~~p~~~~~l~l~~-n~i~~l~~~~f~~~~~L~~L~l~~n~i~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L 877 (1269)
..++.|++++ |.+..++...|.++++|+.|+|++|+++.++ .|..+++|+.|+|++|+++.+.+..|.++++|
T Consensus 171 ----~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 244 (452)
T 3zyi_A 171 ----PSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP--NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSL 244 (452)
T ss_dssp ----TTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC--CCTTCTTCCEEECTTSCCSEECGGGGTTCTTC
T ss_pred ----CcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc--cccccccccEEECcCCcCcccCcccccCccCC
Confidence 1235566665 5666777778888999999999999999885 48889999999999999999999999999999
Q ss_pred CeeecccccCcccChhhhhcCcccceEeccCccceeeecc-c-ccCCccEEEeeCCcccccCCcHHHHHHHHHhccCCcC
Q psy5670 878 RELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVW-H-LSSQIQSITLTSNPWSCDCDFTEKFRDYLQRSRSSVH 955 (1269)
Q Consensus 878 ~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~-~-~~~~l~~l~l~~Np~~C~C~~~~~~~~w~~~~~~~i~ 955 (1269)
++|+|++|+|+.+++..|.++++|+.|+|++|+|+.+++. + .+++|+.|+|++|||.|||++ .||.+|+++... ..
T Consensus 245 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~-~~l~~~l~~~~~-~~ 322 (452)
T 3zyi_A 245 KKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDI-LWLAWWLREYIP-TN 322 (452)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTT-HHHHHHHHHHC----
T ss_pred CEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCCc-hHHHHHHHHhCc-cC
Confidence 9999999999999999999999999999999999999988 6 789999999999999999996 799999987532 22
Q ss_pred ccCcceeccCCcccee
Q psy5670 956 DISQIRCMTGSEVGFT 971 (1269)
Q Consensus 956 ~~~~~~C~~p~~~~~~ 971 (1269)
....++|..|...+|.
T Consensus 323 ~~~~~~C~~P~~l~g~ 338 (452)
T 3zyi_A 323 STCCGRCHAPMHMRGR 338 (452)
T ss_dssp CCSSCBEEESTTTTTC
T ss_pred CccCcEeCCchHhccc
Confidence 3346799999988663
No 47
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=2.8e-28 Score=282.16 Aligned_cols=289 Identities=26% Similarity=0.411 Sum_probs=199.3
Q ss_pred CCcEEECCCCCCCCCCccccCCCCcccCCCcccEEEcCCCCCCccCcccCCCCCCCCEEEccCCCCcccchhhhcCCCCC
Q psy5670 192 SLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSL 271 (1269)
Q Consensus 192 ~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 271 (1269)
+++.++++++.+..++... .++|+.|++++|.++.+++..|.++++|++|++++|.++.+.+.+|.++++|
T Consensus 34 ~l~~l~~~~~~l~~ip~~~---------~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 104 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI---------SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKL 104 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC---------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTC
T ss_pred cCCEEECCCCCccccCCCC---------CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCC
Confidence 6788888888877665422 2468888888888888877778888888888888888888877788888888
Q ss_pred cEEEccCCCCCCCCcccccCCCCCcEEEeeCCcccccCcccccCCCCCCEEECcCCCCCccccCcccccCCCCccEEEcC
Q psy5670 272 TVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIA 351 (1269)
Q Consensus 272 ~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls 351 (1269)
++|++++|+++.+|...+ ++|++|++++|.++.+++..|.++++|+.|++++|.+......+..+..+ +
T Consensus 105 ~~L~L~~n~l~~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~------- 173 (332)
T 2ft3_A 105 QKLYISKNHLVEIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-K------- 173 (332)
T ss_dssp CEEECCSSCCCSCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-C-------
T ss_pred CEEECCCCcCCccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-c-------
Confidence 888888888887776654 67778888877777777766777777777777777665322223333333 4
Q ss_pred CCCCcccCchhhcCCCCCcEEEccCCcccccccccccCCCCCcEEEccCCcccccCcccccCCCCCCEEEccCCCCCccC
Q psy5670 352 YNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIE 431 (1269)
Q Consensus 352 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~ 431 (1269)
|+.|++++|.++.++...+ ++|+.|++++|.+++..+..+..+++|+.|++++|.+.++.
T Consensus 174 -----------------L~~L~l~~n~l~~l~~~~~---~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~ 233 (332)
T 2ft3_A 174 -----------------LNYLRISEAKLTGIPKDLP---ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIE 233 (332)
T ss_dssp -----------------CSCCBCCSSBCSSCCSSSC---SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCC
T ss_pred -----------------cCEEECcCCCCCccCcccc---CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCC
Confidence 4444444454444443221 45666666666666666666777777777777777777777
Q ss_pred hhhhcCCCCCcEEEccCCCCCCchhhhcCCCCCcEEECCCCCCCccChhhhhcc------ccCCeeeccCCcCC--CCCh
Q psy5670 432 ENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSL------HQLAGLRLTENNIS--NISK 503 (1269)
Q Consensus 432 ~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l------~~L~~L~Ls~n~l~--~i~~ 503 (1269)
+..+..+++|++|++++|.++.+|..+..+++|++|++++|.++++....|... ..|+.|++++|++. .+++
T Consensus 234 ~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~ 313 (332)
T 2ft3_A 234 NGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQP 313 (332)
T ss_dssp TTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCG
T ss_pred hhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCc
Confidence 777777888888888888888888778888888888888888887776655432 34555566655553 4455
Q ss_pred hhhcCCCCCCEEEcCCC
Q psy5670 504 GVFEKLSVLTILNLASN 520 (1269)
Q Consensus 504 ~~f~~l~~L~~L~Ls~n 520 (1269)
..|..+++|+.+++++|
T Consensus 314 ~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 314 ATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp GGGTTBCCSTTEEC---
T ss_pred ccccccchhhhhhcccc
Confidence 55555555555555554
No 48
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=5.7e-28 Score=279.60 Aligned_cols=294 Identities=23% Similarity=0.336 Sum_probs=225.0
Q ss_pred CCCEEEccCCCCccCCcccCCCCCCCcEEECCCCCCCCCCccccCCCCcccCCCcccEEEcCCCCCCccCcccCCCCCCC
Q psy5670 168 SLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRL 247 (1269)
Q Consensus 168 ~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 247 (1269)
+|+.++++++.+..+|... .++|++|++++|++..+++..|.. +++|++|++++|.++.+.+..|+++++|
T Consensus 34 ~l~~l~~~~~~l~~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~------l~~L~~L~L~~n~l~~~~~~~~~~l~~L 104 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI---SPDTTLLDLQNNDISELRKDDFKG------LQHLYALVLVNNKISKIHEKAFSPLRKL 104 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC---CTTCCEEECCSSCCCEECTTTTTT------CTTCCEEECCSSCCCEECGGGSTTCTTC
T ss_pred cCCEEECCCCCccccCCCC---CCCCeEEECCCCcCCccCHhHhhC------CCCCcEEECCCCccCccCHhHhhCcCCC
Confidence 7999999999999999865 378999999999999887766654 6899999999999999988899999999
Q ss_pred CEEEccCCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCCcccc--cCcccccCCCCCCEEECc
Q psy5670 248 QELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINV--LAPGIFNVLTQLIVLDLS 325 (1269)
Q Consensus 248 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~ 325 (1269)
++|++++|.++.++...+ ++|++|++++|+++.+++..|..+++|++|++++|.++. ..+..|..+ +|+.|+++
T Consensus 105 ~~L~L~~n~l~~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~ 180 (332)
T 2ft3_A 105 QKLYISKNHLVEIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRIS 180 (332)
T ss_dssp CEEECCSSCCCSCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCC
T ss_pred CEEECCCCcCCccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECc
Confidence 999999999998766443 899999999999999999999999999999999999964 667778888 99999999
Q ss_pred CCCCCccccCcccccCCCCccEEEcCCCCCcccCchhhcCCCCCcEEEccCCcccccccccccCCCCCcEEEccCCcccc
Q psy5670 326 NNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKR 405 (1269)
Q Consensus 326 ~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~ 405 (1269)
+|.+.. ++. .+. ++|++|++++|.+.++.+..+..+++|+.|++++|.++.+++..|..+++|+.|++++|+++.
T Consensus 181 ~n~l~~--l~~-~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 255 (332)
T 2ft3_A 181 EAKLTG--IPK-DLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSR 255 (332)
T ss_dssp SSBCSS--CCS-SSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCB
T ss_pred CCCCCc--cCc-ccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCee
Confidence 999876 322 222 678888888888887777777777778888888777777776667777777777777777764
Q ss_pred cCcccccCCCCCCEEEccCCCCCccChhhhcCCCCCcEEEccCCCCCCchhhhcCCCCCcEEECCCCCCC--ccChhhhh
Q psy5670 406 IESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLIT--EINNLSLN 483 (1269)
Q Consensus 406 ~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~--~~~~~~~~ 483 (1269)
+. ..+..+++|+.|++++|.++.+.+..|....- ....+.|+.|++++|.+. ++.+..|.
T Consensus 256 lp-~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~-----------------~~~~~~l~~L~l~~N~~~~~~~~~~~~~ 317 (332)
T 2ft3_A 256 VP-AGLPDLKLLQVVYLHTNNITKVGVNDFCPVGF-----------------GVKRAYYNGISLFNNPVPYWEVQPATFR 317 (332)
T ss_dssp CC-TTGGGCTTCCEEECCSSCCCBCCTTSSSCSSC-----------------CSSSCCBSEEECCSSSSCGGGSCGGGGT
T ss_pred cC-hhhhcCccCCEEECCCCCCCccChhHcccccc-----------------ccccccccceEeecCcccccccCccccc
Confidence 43 34566666666666666666665554433210 001345666666666665 45556666
Q ss_pred ccccCCeeeccCCc
Q psy5670 484 SLHQLAGLRLTENN 497 (1269)
Q Consensus 484 ~l~~L~~L~Ls~n~ 497 (1269)
.+++|+.+++++|+
T Consensus 318 ~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 318 CVTDRLAIQFGNYK 331 (332)
T ss_dssp TBCCSTTEEC----
T ss_pred ccchhhhhhccccc
Confidence 66677777766653
No 49
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=3.5e-27 Score=272.74 Aligned_cols=297 Identities=23% Similarity=0.329 Sum_probs=225.0
Q ss_pred CCCCCEEEccCCCCccCCcccCCCCCCCcEEECCCCCCCCCCccccCCCCcccCCCcccEEEcCCCCCCccCcccCCCCC
Q psy5670 166 LQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLS 245 (1269)
Q Consensus 166 l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 245 (1269)
..+|+.++++++.+..+|... .++|++|+|++|+++++++..|.. +++|++|++++|.++.+.+..|.+++
T Consensus 30 ~c~l~~l~~~~~~l~~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~------l~~L~~L~L~~n~l~~~~~~~~~~l~ 100 (330)
T 1xku_A 30 QCHLRVVQCSDLGLEKVPKDL---PPDTALLDLQNNKITEIKDGDFKN------LKNLHTLILINNKISKISPGAFAPLV 100 (330)
T ss_dssp EEETTEEECTTSCCCSCCCSC---CTTCCEEECCSSCCCCBCTTTTTT------CTTCCEEECCSSCCCCBCTTTTTTCT
T ss_pred cCCCeEEEecCCCccccCccC---CCCCeEEECCCCcCCEeChhhhcc------CCCCCEEECCCCcCCeeCHHHhcCCC
Confidence 347999999999999999754 378999999999999987766654 68999999999999999888899999
Q ss_pred CCCEEEccCCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCCcccc--cCcccccCCCCCCEEE
Q psy5670 246 RLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINV--LAPGIFNVLTQLIVLD 323 (1269)
Q Consensus 246 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~ 323 (1269)
+|++|++++|.++.++...+ ++|++|++++|.++.+++..|..+++|++|++++|.+.. ..+..|.++++|+.|+
T Consensus 101 ~L~~L~Ls~n~l~~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ 177 (330)
T 1xku_A 101 KLERLYLSKNQLKELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIR 177 (330)
T ss_dssp TCCEEECCSSCCSBCCSSCC---TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEE
T ss_pred CCCEEECCCCcCCccChhhc---ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEE
Confidence 99999999999998765433 799999999999999999999999999999999999864 6677889999999999
Q ss_pred CcCCCCCccccCcccccCCCCccEEEcCCCCCcccCchhhcCCCCCcEEEccCCcccccccccccCCCCCcEEEccCCcc
Q psy5670 324 LSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKL 403 (1269)
Q Consensus 324 L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l 403 (1269)
+++|.+.. ++.. + .++|+.|++++|.++++.+..|..+++|++|++++|.++.+++..|..+++|+.|++++|++
T Consensus 178 l~~n~l~~--l~~~-~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l 252 (330)
T 1xku_A 178 IADTNITT--IPQG-L--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL 252 (330)
T ss_dssp CCSSCCCS--CCSS-C--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCC
T ss_pred CCCCcccc--CCcc-c--cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcC
Confidence 99999876 3222 2 26788888888888777777777777788888877777777666677777777777777777
Q ss_pred cccCcccccCCCCCCEEEccCCCCCccChhhhcCCCCCcEEEccCCCCCCchhhhcCCCCCcEEECCCCCCCc--cChhh
Q psy5670 404 KRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITE--INNLS 481 (1269)
Q Consensus 404 ~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~--~~~~~ 481 (1269)
+.+. ..+..+++|++|++++|.++++.+..|.... .....+.|+.|++++|.+.. +.+..
T Consensus 253 ~~lp-~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~-----------------~~~~~~~l~~l~l~~N~~~~~~i~~~~ 314 (330)
T 1xku_A 253 VKVP-GGLADHKYIQVVYLHNNNISAIGSNDFCPPG-----------------YNTKKASYSGVSLFSNPVQYWEIQPST 314 (330)
T ss_dssp SSCC-TTTTTCSSCCEEECCSSCCCCCCTTSSSCSS-----------------CCTTSCCCSEEECCSSSSCGGGSCGGG
T ss_pred ccCC-hhhccCCCcCEEECCCCcCCccChhhcCCcc-----------------cccccccccceEeecCcccccccCccc
Confidence 6443 3456666677777776666666555543220 00112455666666665543 44556
Q ss_pred hhccccCCeeeccCCc
Q psy5670 482 LNSLHQLAGLRLTENN 497 (1269)
Q Consensus 482 ~~~l~~L~~L~Ls~n~ 497 (1269)
|..+..++.++|++|+
T Consensus 315 f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 315 FRCVYVRAAVQLGNYK 330 (330)
T ss_dssp GTTCCCGGGEEC----
T ss_pred cccccceeEEEecccC
Confidence 6666666666666653
No 50
>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A
Probab=99.95 E-value=1.4e-29 Score=254.01 Aligned_cols=137 Identities=27% Similarity=0.440 Sum_probs=122.7
Q ss_pred ccCCCCceeEEEEcccCCHHHHHHHHHHhhhcCCCCceEEEecccCCCCCchhHHHHHHHH-hcceEEEEecccchhhhh
Q psy5670 1078 MDDRDKLFDAFVSYSSKDEAFVAEELAPILENGDPAYKLCLHYREFPVGGYIGDTIVQAVE-SSRRTIMVLSENFIKSEW 1156 (1269)
Q Consensus 1078 ~~~~~~~yDafvsy~~~d~~~v~~~l~~~Le~~~~~~~l~~~~rd~~~G~~~~~~i~~~i~-~Sr~~i~vlS~~~~~s~w 1156 (1269)
.+.+++.|||||||+++|++||. .|.+.||++++||++|+++||+.||+.+.++|.++|+ +||++|+|+|++|++|.|
T Consensus 10 ~~~~~~~yDvFISys~~D~~fv~-~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~w 88 (160)
T 2js7_A 10 LGHMPERFDAFICYCPSDIQFVQ-EMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKE 88 (160)
T ss_dssp TSCCTTCEEEEEECCGGGHHHHH-HHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSHH
T ss_pred CCCCCcceEEEEEcccccHHHHH-HHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCHH
Confidence 44557899999999999999997 6999999866799999999999999999999999998 799999999999999999
Q ss_pred hHHHHHHHHHHHhcCC-CeEEEEEeCCCCCCCCCHHHHHHHhcCceEEcC----CcchHHHHHHhCCCC
Q psy5670 1157 CRYEFKSAHHQVLRGK-KRLIVILLGEVPQKDLDPDIRLYLKSNTYLQWG----DKLFWEKLKFALPDV 1220 (1269)
Q Consensus 1157 ~~~e~~~a~~~~~~~~-~~~i~i~~~~~~~~~~~~~l~~~l~~~~~l~w~----~~~Fw~~l~~~l~~~ 1220 (1269)
|.+|++.|+++.++++ .+||||+++++++ .+|. +++..+|++|. +++||++||+|||.+
T Consensus 89 c~~El~~a~~~~~~~~~~~vIpV~~~~~~~-~lp~----ll~~~~~~~~~~~~~~~~FW~kL~~al~~~ 152 (160)
T 2js7_A 89 CDFQTKFALSLSPGAHQKRLIPIKYKAMKK-EFPS----ILRFITVCDYTNPCTKSWFWTRLAKALSLP 152 (160)
T ss_dssp HHHHHHHHHHHCTTHHHHTEEEEESSCCCC-CCCT----TTSCSSCEETTCTTTCSSHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHccCCCEEEEEEEcccch-hhHH----HHhceEEEECCCCCCChHHHHHHHHHcCCc
Confidence 9999999999887766 7999999999963 4454 56778999994 469999999999954
No 51
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=1.1e-27 Score=273.87 Aligned_cols=165 Identities=21% Similarity=0.347 Sum_probs=149.6
Q ss_pred CcEEEecCCCCCCcCCCcCCCCCCccEEEccCcCccc-cccccccCCCCCCEEeCCCCCCcccCcccccCCcccCeeecc
Q psy5670 805 ATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVET-IHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQ 883 (1269)
Q Consensus 805 ~~~l~l~~n~i~~l~~~~f~~~~~L~~L~l~~n~i~~-i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~ 883 (1269)
+++|++++|.+..+.+..|.++++|++|++++|.++. +.+..|..+++|+.|+|++|+++.+.+..|.++++|++|+|+
T Consensus 128 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 207 (306)
T 2z66_A 128 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS 207 (306)
T ss_dssp CCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECT
T ss_pred CCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECC
Confidence 4678888888888777888899999999999999987 678899999999999999999999999999999999999999
Q ss_pred cccCcccChhhhhcCcccceEeccCccceeeecc-c-cc-CCccEEEeeCCcccccCCcHHHHHHHHHhccCCcCccCcc
Q psy5670 884 YNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVW-H-LS-SQIQSITLTSNPWSCDCDFTEKFRDYLQRSRSSVHDISQI 960 (1269)
Q Consensus 884 ~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~-~-~~-~~l~~l~l~~Np~~C~C~~~~~~~~w~~~~~~~i~~~~~~ 960 (1269)
+|+|+.+++..|..+++|++|+|++|+++++.+. + .. ++|+.|++++|||.|+|+. .||.+|++.....+.+...+
T Consensus 208 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~-~~~~~~l~~~~~~~~~~~~~ 286 (306)
T 2z66_A 208 HNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH-QSFLQWIKDQRQLLVEVERM 286 (306)
T ss_dssp TSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGG-HHHHHHHHHTGGGBSCGGGC
T ss_pred CCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccCh-HHHHHHHHhhhhhhcccccc
Confidence 9999999999999999999999999999998887 5 44 5999999999999999996 79999999876666677889
Q ss_pred eeccCCccce
Q psy5670 961 RCMTGSEVGF 970 (1269)
Q Consensus 961 ~C~~p~~~~~ 970 (1269)
+|..|+..+|
T Consensus 287 ~C~~p~~~~g 296 (306)
T 2z66_A 287 ECATPSDKQG 296 (306)
T ss_dssp BEEESGGGTT
T ss_pred ccCCchhhCC
Confidence 9999998865
No 52
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.95 E-value=7.6e-28 Score=260.04 Aligned_cols=197 Identities=31% Similarity=0.533 Sum_probs=182.3
Q ss_pred CCCCCCceecCCCCCcceeeecCCCCccccCCCCCCCCCcEEEecCCCCCCcCCCcCCCCCCccEEEccCcCcccccccc
Q psy5670 767 MTCPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKT 846 (1269)
Q Consensus 767 ~~cp~~C~c~~~~~~~~~~v~c~~~~l~~~~p~~~p~~~~~l~l~~n~i~~l~~~~f~~~~~L~~L~l~~n~i~~i~~~~ 846 (1269)
..||..|.|. ...++|++.+++.+ |..+|..+++|++++|.|+.+++..|.++++|+.|+|++|+|+.+.+.+
T Consensus 3 ~~CP~~C~C~------~~~v~c~~~~l~~i-P~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~ 75 (220)
T 2v9t_B 3 LHCPAACTCS------NNIVDCRGKGLTEI-PTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDA 75 (220)
T ss_dssp CCSCTTSEEE------TTEEECTTSCCSSC-CSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTT
T ss_pred CCCCCCCEEC------CCEEEcCCCCcCcC-CCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHH
Confidence 3699999995 35799999999998 9999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCEEeCCCCCCcccCcccccCCcccCeeecccccCcccChhhhhcCcccceEeccCccceeeecc-c-ccCCcc
Q psy5670 847 FNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVW-H-LSSQIQ 924 (1269)
Q Consensus 847 f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~-~-~~~~l~ 924 (1269)
|.++++|++|+|++|+|+.+++..|.++++|++|+|++|+|+.+++..|..+++|++|+|++|+|+++++. | .+++|+
T Consensus 76 ~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 155 (220)
T 2v9t_B 76 FQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQ 155 (220)
T ss_dssp TTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred hhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998 7 789999
Q ss_pred EEEeeCCcccccCCcHHHHHHHHHhccCCcCccCcceeccCCccceeeee
Q psy5670 925 SITLTSNPWSCDCDFTEKFRDYLQRSRSSVHDISQIRCMTGSEVGFTIMR 974 (1269)
Q Consensus 925 ~l~l~~Np~~C~C~~~~~~~~w~~~~~~~i~~~~~~~C~~p~~~~~~~~~ 974 (1269)
.|+|++|||.|||++ .|+..|++..... ...+.|..|...+|..+.
T Consensus 156 ~L~L~~N~~~c~c~l-~~l~~~l~~~~~~---~~~~~C~~P~~l~g~~l~ 201 (220)
T 2v9t_B 156 TMHLAQNPFICDCHL-KWLADYLHTNPIE---TSGARCTSPRRLANKRIG 201 (220)
T ss_dssp EEECCSSCEECSGGG-HHHHHHHHHCCCB---CSCCBEEESGGGTTCBGG
T ss_pred EEEeCCCCcCCCCcc-HHHHHHHHhCCCC---ccCCCcCCchHHcCCchh
Confidence 999999999999996 7999999875432 356899999988774443
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=1e-27 Score=280.07 Aligned_cols=135 Identities=17% Similarity=0.274 Sum_probs=88.6
Q ss_pred EEEccCcCccccccccccCCCCCCEEeCCCCCCcccCccccc---CCcccCeeecccccCcc-----cChhhhhcCcccc
Q psy5670 831 ILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFE---RLENLRELYLQYNKIIY-----ISNRTFLSLTHLK 902 (1269)
Q Consensus 831 ~L~l~~n~i~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~---~l~~L~~L~L~~N~l~~-----i~~~~f~~l~~L~ 902 (1269)
.|++++|+++.++...+..+++|+.|+|++|+++.++...+. ....++.++|++|+++. + +..|..+++|+
T Consensus 202 ~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l-~~~l~~l~~L~ 280 (353)
T 2z80_A 202 HLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQV-MKLLNQISGLL 280 (353)
T ss_dssp EEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHH-HHHHHTCTTCC
T ss_pred eecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhh-HHHHhcccCCC
Confidence 333333333333333333344444444444444443332221 23455566666665554 4 34678899999
Q ss_pred eEeccCccceeeecc-c-ccCCccEEEeeCCcccccCCcHHHHHHHHHhccCCcCccCcceeccCCcc
Q psy5670 903 VLQLDHNRITSFAVW-H-LSSQIQSITLTSNPWSCDCDFTEKFRDYLQRSRSSVHDISQIRCMTGSEV 968 (1269)
Q Consensus 903 ~L~L~~N~l~~~~~~-~-~~~~l~~l~l~~Np~~C~C~~~~~~~~w~~~~~~~i~~~~~~~C~~p~~~ 968 (1269)
.|+|++|+|+.++.. | .+++|+.|++++|||.|+|+...|+..|++.....+ ...+.|..|...
T Consensus 281 ~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~~l~~l~~~~~~~~~~~--~~~~~C~~p~~~ 346 (353)
T 2z80_A 281 ELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKE--QGSAKCSGSGKP 346 (353)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHHHHHHHHHHHHTTTTE--ESCCBBTTTCCB
T ss_pred EEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCCCcHHHHHHHHhccccC--CCCcccCCCCCc
Confidence 999999999999888 6 789999999999999999986689999998876555 457899987643
No 54
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.95 E-value=5.8e-27 Score=264.54 Aligned_cols=218 Identities=21% Similarity=0.266 Sum_probs=191.5
Q ss_pred ccccccccEEEcCCCccccccCCcccCCccEEEccCcccccccCCccCCCCCccEEEcCCCCcccccccccccccCCCCC
Q psy5670 600 IESQLRLTYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHK 679 (1269)
Q Consensus 600 l~~~~~L~~LdLs~N~l~~~~~~~~~~~L~~L~Ls~N~i~~~~~~~f~~~~~L~~LdLs~N~l~~l~~~~~~~~~~~~~~ 679 (1269)
+..+++++++++++|+++.++. .++++++.|+|++|+++++.+..|..+++|+.|+|++|+|+.++... ..
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~-~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-------~l- 76 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPP-DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDG-------TL- 76 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCS-CCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCS-------CC-
T ss_pred ccccCCccEEECCCCCCCcCCC-CCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCC-------CC-
Confidence 3456688999999999988764 46789999999999999999999999999999999999887643210 00
Q ss_pred CCCceEecCCccccccCChhHHhhccccccCCCcccccCccccccccccCCCcccccccCCCccccccccCccccccccc
Q psy5670 680 NIPDFYIGENPFQCDCNMQWLQSYSVNKERNKPNLVDLDTVTCKLLYNRANPAILLKEAHSNQFLCEYETNCAPLCHCCD 759 (1269)
Q Consensus 680 ~l~~l~l~~Np~~c~c~~~~l~~~~~~~~~~~~~~~~l~~~~c~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 759 (1269)
T Consensus 77 -------------------------------------------------------------------------------- 76 (290)
T 1p9a_G 77 -------------------------------------------------------------------------------- 76 (290)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcccCCCCCCceecCCCCCcceeeecCCCCccccCCCCCCCCCcEEEecCCCCCCcCCCcCCCCCCccEEEccCcCc
Q psy5670 760 FDACDCEMTCPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHV 839 (1269)
Q Consensus 760 ~~~~~~~~~cp~~C~c~~~~~~~~~~v~c~~~~l~~~~p~~~p~~~~~l~l~~n~i~~l~~~~f~~~~~L~~L~l~~n~i 839 (1269)
..++.|++++|.|+.++. .|.++++|+.|++++|+|
T Consensus 77 -------------------------------------------~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~l~~N~l 112 (290)
T 1p9a_G 77 -------------------------------------------PVLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRL 112 (290)
T ss_dssp -------------------------------------------TTCCEEECCSSCCSSCCC-CTTTCTTCCEEECCSSCC
T ss_pred -------------------------------------------CcCCEEECCCCcCCcCch-hhccCCCCCEEECCCCcC
Confidence 124678888888887774 677889999999999999
Q ss_pred cccccccccCCCCCCEEeCCCCCCcccCcccccCCcccCeeecccccCcccChhhhhcCcccceEeccCccceeeecc-c
Q psy5670 840 ETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVW-H 918 (1269)
Q Consensus 840 ~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~-~ 918 (1269)
+.+++.+|.++++|+.|+|++|+|+.+++..|.++++|+.|+|++|+|+.+++..|..+++|++|+|++|+|+.++.. +
T Consensus 113 ~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~ 192 (290)
T 1p9a_G 113 TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192 (290)
T ss_dssp CCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred cccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999998 6
Q ss_pred ccCCccEEEeeCCcccccCCcHHHHHHHHHhcc
Q psy5670 919 LSSQIQSITLTSNPWSCDCDFTEKFRDYLQRSR 951 (1269)
Q Consensus 919 ~~~~l~~l~l~~Np~~C~C~~~~~~~~w~~~~~ 951 (1269)
...+|+.++|++|||.|+|+. .||.+|++.+.
T Consensus 193 ~~~~L~~l~L~~Np~~C~c~~-~~l~~wl~~~~ 224 (290)
T 1p9a_G 193 GSHLLPFAFLHGNPWLCNCEI-LYFRRWLQDNA 224 (290)
T ss_dssp TTCCCSEEECCSCCBCCSGGG-HHHHHHHHHTG
T ss_pred ccccCCeEEeCCCCccCcCcc-HHHHHHHHhCc
Confidence 778999999999999999996 69999998754
No 55
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.95 E-value=2.8e-29 Score=305.05 Aligned_cols=352 Identities=20% Similarity=0.233 Sum_probs=238.0
Q ss_pred CcccEEEcCCCCCCccCccc-CCCCCCCCEEEccCCCCcccc----hhhhcCCCCCcEEEccCCCCCCCCc-ccccCCC-
Q psy5670 221 INLRVLDLSNNSFDSLPAEG-FSRLSRLQELYLQGNILTFLA----DHALDGLNSLTVLNLSVNNLVNIPP-ELFNQSR- 293 (1269)
Q Consensus 221 ~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~Ls~n~l~~l~~-~~f~~l~- 293 (1269)
++|++|+|++|.++...... +..+++|++|++++|.++... +..+..+++|++|++++|.+..... .++..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 46777777777776544322 566777777787777776432 3456677788888888777654322 2223344
Q ss_pred ---CCcEEEeeCCcccc----cCcccccCCCCCCEEECcCCCCCccccC---cccccCCCCccEEEcCCCCCcccC----
Q psy5670 294 ---DLKEVYLQNNSINV----LAPGIFNVLTQLIVLDLSNNELTEEWVN---AATFSGLHRLVVLNIAYNKMNKLD---- 359 (1269)
Q Consensus 294 ---~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~~~l~~L~~L~Ls~n~l~~~~---- 359 (1269)
+|++|++++|.++. ..+..+..+++|++|++++|.+...... .......++|++|++++|.++...
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 68888888887774 2355677788888888888877642110 011223557888888888777644
Q ss_pred chhhcCCCCCcEEEccCCccccccccccc-----CCCCCcEEEccCCcccccC----cccccCCCCCCEEEccCCCCCcc
Q psy5670 360 SSIFKDLYRLQVLHLENNQIESIHRNTFA-----SLSNLHTLIMSNNKLKRIE----SNSLDSLTALSVLSLDNNELEYI 430 (1269)
Q Consensus 360 ~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~-----~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~Ls~n~i~~~ 430 (1269)
+..+..+++|++|++++|.++......+. ..++|+.|++++|.+++.. +..+..+++|++|++++|.+...
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 242 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence 34455678888888888887654433332 3568888888888877642 44566778888888888877654
Q ss_pred C-----hhhhcCCCCCcEEEccCCCCCC-----chhhhcCCCCCcEEECCCCCCCccChhhhhcc-----ccCCeeeccC
Q psy5670 431 E-----ENALKNSTSLQDFHLNGNKLTE-----IPKVLRNLHSLKTLDLGDNLITEINNLSLNSL-----HQLAGLRLTE 495 (1269)
Q Consensus 431 ~-----~~~~~~l~~L~~L~Ls~n~l~~-----lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l-----~~L~~L~Ls~ 495 (1269)
. +..+..+++|++|++++|.++. ++..+..+++|++|++++|.+++.....+... ++|+.|++++
T Consensus 243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~ 322 (461)
T 1z7x_W 243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS 322 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred HHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCC
Confidence 3 2333457888888888888886 67777778888888888888876555444432 5888888888
Q ss_pred CcCCCCC----hhhhcCCCCCCEEEcCCCccccccccccCC-----CCCccEEEccccccc-----ccCCcCCCCCCCcE
Q psy5670 496 NNISNIS----KGVFEKLSVLTILNLASNKIQKVEAGTFDN-----NSNLVAIRLDGNYLT-----DIGGLFPKLPNLVW 561 (1269)
Q Consensus 496 n~l~~i~----~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~-----~~~L~~L~L~~n~l~-----~l~~~~~~l~~L~~ 561 (1269)
|.++... ...+..+++|++|++++|++++.....+.. .++|+.|++++|.++ .++..+..+++|++
T Consensus 323 n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~ 402 (461)
T 1z7x_W 323 CSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRE 402 (461)
T ss_dssp SCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCE
T ss_pred CCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccE
Confidence 8886543 234566788888888888887654433321 568888888888887 45666666778888
Q ss_pred EEccCCcCccc
Q psy5670 562 LNISENLLEWF 572 (1269)
Q Consensus 562 L~Ls~n~l~~~ 572 (1269)
|++++|+++..
T Consensus 403 L~l~~N~i~~~ 413 (461)
T 1z7x_W 403 LDLSNNCLGDA 413 (461)
T ss_dssp EECCSSSCCHH
T ss_pred EECCCCCCCHH
Confidence 88888877644
No 56
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=5.2e-27 Score=283.65 Aligned_cols=264 Identities=25% Similarity=0.340 Sum_probs=184.5
Q ss_pred hccccCCCCCCCcccccccCCcccccCCCCCCCCceEEEEeeecccCcccCCccccccccceeEEEEEeCCceeeccCCC
Q psy5670 25 SKALRYQAPDECKWFAVTSEGAEIEVPSAAEPDQEVALVCKLRTINSEIENTNFSIIQAQYTVRLRIECGDMLFFQSSLS 104 (1269)
Q Consensus 25 ~~~~~~~cp~~C~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~i~~~~~~~~~s~~~~~~~~~L~L~~~~~~~~~~~i~ 104 (1269)
..+....||..|.|... ...+.|.+..++.+|. ..+.++++|+|++|. ...++
T Consensus 39 ~~~~~~~Cp~~C~C~~~-----------------~~~v~c~~~~l~~iP~------~~~~~l~~L~L~~n~----i~~~~ 91 (452)
T 3zyi_A 39 ASAGPQNCPSVCSCSNQ-----------------FSKVVCTRRGLSEVPQ------GIPSNTRYLNLMENN----IQMIQ 91 (452)
T ss_dssp -----CCCCTTSEECSS-----------------SCEEECCSSCCSSCCS------CCCTTCSEEECCSSC----CCEEC
T ss_pred ccCCcCCCCCCCEECCC-----------------CcEEEECCCCcCccCC------CCCCCccEEECcCCc----CceEC
Confidence 34556889999999631 1268898888888872 235678888888888 55677
Q ss_pred chhccCCcccceeEeccccCCCCChhhccCCccCceeecccccCCCCccceeccchhhhhcCCCCCEEEccCCCCccCCc
Q psy5670 105 PGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHNVFTDELQSLESLDLSMNSIWTLPD 184 (1269)
Q Consensus 105 ~~~f~~l~~L~~L~L~~~~i~~i~~~~f~~l~~L~~L~L~~~~~~~~~~~~~i~~~~f~~~l~~L~~L~Ls~n~l~~l~~ 184 (1269)
+.+|.++++|++|+|++|.++.+++.+|.++++|++|+|++|... .+.+..| .++++|++|+|++|.+..++.
T Consensus 92 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~------~~~~~~~-~~l~~L~~L~L~~N~l~~~~~ 164 (452)
T 3zyi_A 92 ADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT------VIPSGAF-EYLSKLRELWLRNNPIESIPS 164 (452)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS------BCCTTTS-SSCTTCCEEECCSCCCCEECT
T ss_pred HHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCC------ccChhhh-cccCCCCEEECCCCCcceeCH
Confidence 778888888888888888888887778888888888888655432 3445556 777888888888888777777
Q ss_pred ccCCCCCCCcEEECCC-CCCCCCCccccCCCCcccCCCcccEEEcCCCCCCccCcccCCCCCCCCEEEccCCCCcccchh
Q psy5670 185 AIFCPLQSLSYLNLTQ-NKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADH 263 (1269)
Q Consensus 185 ~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 263 (1269)
..|..+++|++|++++ +.+..++...|.. +++|++|+|++|.++.++ .+..+++|++|++++|.++++.+.
T Consensus 165 ~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~------l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~ 236 (452)
T 3zyi_A 165 YAFNRVPSLMRLDLGELKKLEYISEGAFEG------LFNLKYLNLGMCNIKDMP--NLTPLVGLEELEMSGNHFPEIRPG 236 (452)
T ss_dssp TTTTTCTTCCEEECCCCTTCCEECTTTTTT------CTTCCEEECTTSCCSSCC--CCTTCTTCCEEECTTSCCSEECGG
T ss_pred hHHhcCCcccEEeCCCCCCccccChhhccC------CCCCCEEECCCCcccccc--cccccccccEEECcCCcCcccCcc
Confidence 7777778888888777 3444444434433 566777777777777664 266677777777777777777666
Q ss_pred hhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCCcccccCcccccCCCCCCEEECcCCCCC
Q psy5670 264 ALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELT 330 (1269)
Q Consensus 264 ~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 330 (1269)
.|.++++|+.|++++|+++.+++..|..+++|+.|+|++|.++++++..|..+++|+.|+|++|.+.
T Consensus 237 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 237 SFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp GGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred cccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 6777777777777777776666666666667777777777666666666666666666666666554
No 57
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=7.4e-27 Score=281.27 Aligned_cols=263 Identities=25% Similarity=0.351 Sum_probs=188.9
Q ss_pred ccccCCCCCCCcccccccCCcccccCCCCCCCCceEEEEeeecccCcccCCccccccccceeEEEEEeCCceeeccCCCc
Q psy5670 26 KALRYQAPDECKWFAVTSEGAEIEVPSAAEPDQEVALVCKLRTINSEIENTNFSIIQAQYTVRLRIECGDMLFFQSSLSP 105 (1269)
Q Consensus 26 ~~~~~~cp~~C~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~i~~~~~~~~~s~~~~~~~~~L~L~~~~~~~~~~~i~~ 105 (1269)
.+....||..|.|... ...+.|....+..+|. ..+..++.|+|++|. ...+++
T Consensus 29 ~~~~~~Cp~~C~C~~~-----------------~~~v~c~~~~l~~iP~------~~~~~l~~L~L~~n~----i~~~~~ 81 (440)
T 3zyj_A 29 TGSAQTCPSVCSCSNQ-----------------FSKVICVRKNLREVPD------GISTNTRLLNLHENQ----IQIIKV 81 (440)
T ss_dssp ----CCCCSSSEECTT-----------------SCEEECCSCCCSSCCS------CCCTTCSEEECCSCC----CCEECT
T ss_pred CcccccCCCCCEeCCC-----------------CCEEEeCCCCcCcCCC------CCCCCCcEEEccCCc----CCeeCH
Confidence 3445789999999731 1268898888988872 235778888888888 566777
Q ss_pred hhccCCcccceeEeccccCCCCChhhccCCccCceeecccccCCCCccceeccchhhhhcCCCCCEEEccCCCCccCCcc
Q psy5670 106 GSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHNVFTDELQSLESLDLSMNSIWTLPDA 185 (1269)
Q Consensus 106 ~~f~~l~~L~~L~L~~~~i~~i~~~~f~~l~~L~~L~L~~~~~~~~~~~~~i~~~~f~~~l~~L~~L~Ls~n~l~~l~~~ 185 (1269)
.+|.++++|++|+|++|.++.+++++|.++++|++|+|++|+.. .+.+..| .++++|++|+|++|.+..++..
T Consensus 82 ~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~------~~~~~~~-~~l~~L~~L~L~~N~i~~~~~~ 154 (440)
T 3zyj_A 82 NSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT------TIPNGAF-VYLSKLKELWLRNNPIESIPSY 154 (440)
T ss_dssp TTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCS------SCCTTTS-CSCSSCCEEECCSCCCCEECTT
T ss_pred HHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCC------eeCHhHh-hccccCceeeCCCCcccccCHH
Confidence 78888888888888888888888778888888888888755432 3445566 7778888888888888877777
Q ss_pred cCCCCCCCcEEECCCC-CCCCCCccccCCCCcccCCCcccEEEcCCCCCCccCcccCCCCCCCCEEEccCCCCcccchhh
Q psy5670 186 IFCPLQSLSYLNLTQN-KLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHA 264 (1269)
Q Consensus 186 ~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 264 (1269)
.|..+++|++|+|++| .+..++...|.. +++|++|+|++|.++.++. +..+++|++|++++|.++.+.+..
T Consensus 155 ~~~~l~~L~~L~l~~~~~l~~i~~~~~~~------l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~ 226 (440)
T 3zyj_A 155 AFNRIPSLRRLDLGELKRLSYISEGAFEG------LSNLRYLNLAMCNLREIPN--LTPLIKLDELDLSGNHLSAIRPGS 226 (440)
T ss_dssp TTTTCTTCCEEECCCCTTCCEECTTTTTT------CSSCCEEECTTSCCSSCCC--CTTCSSCCEEECTTSCCCEECTTT
T ss_pred HhhhCcccCEeCCCCCCCcceeCcchhhc------ccccCeecCCCCcCccccc--cCCCcccCEEECCCCccCccChhh
Confidence 7778888888888774 444444444433 5677777777777776653 667777777777777777776777
Q ss_pred hcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCCcccccCcccccCCCCCCEEECcCCCCC
Q psy5670 265 LDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELT 330 (1269)
Q Consensus 265 ~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 330 (1269)
|.++++|+.|++++|+++.+++..|..+++|+.|+|++|.++.+++..|..+++|+.|+|++|.+.
T Consensus 227 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 227 FQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp TTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred hccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 777777777777777777776666777777777777777777766666666777777777766654
No 58
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.94 E-value=8.6e-29 Score=300.80 Aligned_cols=380 Identities=19% Similarity=0.194 Sum_probs=209.6
Q ss_pred CCCcEEEeeCCcccccCcc-cccCCCCCCEEECcCCCCCccc--cCcccccCCCCccEEEcCCCCCcccCchh-hcCCC-
Q psy5670 293 RDLKEVYLQNNSINVLAPG-IFNVLTQLIVLDLSNNELTEEW--VNAATFSGLHRLVVLNIAYNKMNKLDSSI-FKDLY- 367 (1269)
Q Consensus 293 ~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~- 367 (1269)
++|++|++++|.++..... .+..+++|++|++++|.+.... ..+..+..+++|++|++++|.+.+..... +..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 5677888888877665433 3667778888888888776421 01234566677777777777766543322 22333
Q ss_pred ---CCcEEEccCCcccccc----cccccCCCCCcEEEccCCcccccCcccc-----cCCCCCCEEEccCCCCCccC----
Q psy5670 368 ---RLQVLHLENNQIESIH----RNTFASLSNLHTLIMSNNKLKRIESNSL-----DSLTALSVLSLDNNELEYIE---- 431 (1269)
Q Consensus 368 ---~L~~L~Ls~n~l~~i~----~~~f~~l~~L~~L~Ls~n~l~~~~~~~~-----~~l~~L~~L~Ls~n~i~~~~---- 431 (1269)
+|++|++++|.++... +..+..+++|++|++++|.+++.....+ ...++|++|++++|.+....
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 5777777777666322 3445666666666666666654332221 12345566666665555433
Q ss_pred hhhhcCCCCCcEEEccCCCCCCch-----hhh-cCCCCCcEEECCCCCCCccChhhhhccccCCeeeccCCcCCCCChhh
Q psy5670 432 ENALKNSTSLQDFHLNGNKLTEIP-----KVL-RNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGV 505 (1269)
Q Consensus 432 ~~~~~~l~~L~~L~Ls~n~l~~lp-----~~l-~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~ 505 (1269)
+..+..+++|++|++++|.++... ..+ ...++|++|++++|.+++..... + ...
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~-------------------l-~~~ 222 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRD-------------------L-CGI 222 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHH-------------------H-HHH
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHH-------------------H-HHH
Confidence 233344455555555555544211 111 12334555555555544421000 1 122
Q ss_pred hcCCCCCCEEEcCCCcccccc-----ccccCCCCCccEEEcccccccc-----cCCcCCCCCCCcEEEccCCcCcccccc
Q psy5670 506 FEKLSVLTILNLASNKIQKVE-----AGTFDNNSNLVAIRLDGNYLTD-----IGGLFPKLPNLVWLNISENLLEWFDYA 575 (1269)
Q Consensus 506 f~~l~~L~~L~Ls~n~i~~~~-----~~~~~~~~~L~~L~L~~n~l~~-----l~~~~~~l~~L~~L~Ls~n~l~~~~~~ 575 (1269)
+..+++|++|++++|++.+.. +..+..+++|+.|++++|.++. ++..+..+++|+.|++++|.++..+..
T Consensus 223 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~ 302 (461)
T 1z7x_W 223 VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR 302 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHH
T ss_pred HHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHH
Confidence 334445555555555444321 1112234455555555555543 333444455555555555555432211
Q ss_pred c-------cCCCccEEECCCCCcccccc---cccccccccccEEEcCCCccccccCCcc-------cCCccEEEccCccc
Q psy5670 576 L-------IPADLQWLDIHGNQISELGN---YFEIESQLRLTYFDASSNKLTELTGNAI-------PHSVENLFLTNNLI 638 (1269)
Q Consensus 576 ~-------lp~~L~~L~Ls~n~l~~~~~---~~~l~~~~~L~~LdLs~N~l~~~~~~~~-------~~~L~~L~Ls~N~i 638 (1269)
. -+++|+.|++++|.++..+. ...+..+++|++|++++|++++.....+ .++|++|+|++|++
T Consensus 303 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i 382 (461)
T 1z7x_W 303 LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDV 382 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred HHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCC
Confidence 1 11366667777776664321 1123456788888888888876543322 24899999999999
Q ss_pred cc----ccCCccCCCCCccEEEcCCCCcccccccccccccCC-CCCCCCceEecCCcccc
Q psy5670 639 SK----VQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLP-SHKNIPDFYIGENPFQC 693 (1269)
Q Consensus 639 ~~----~~~~~f~~~~~L~~LdLs~N~l~~l~~~~~~~~~~~-~~~~l~~l~l~~Np~~c 693 (1269)
++ ..+..+..+++|+.|++++|+|+......+.. .++ ...+++.+.+.++.+..
T Consensus 383 ~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~-~l~~~~~~L~~L~~~~~~~~~ 441 (461)
T 1z7x_W 383 SDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVE-SVRQPGCLLEQLVLYDIYWSE 441 (461)
T ss_dssp CHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHH-HHTSTTCCCCEEECTTCCCCH
T ss_pred ChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHH-HhccCCcchhheeecccccCH
Confidence 86 55667788899999999999998764433321 112 23467778877776543
No 59
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=5.1e-26 Score=257.11 Aligned_cols=259 Identities=24% Similarity=0.361 Sum_probs=203.5
Q ss_pred cEEEcCCCccccccCCcccCCccEEEccCcccccccCCccCCCCCccEEEcCCCCcccccccccccccCCCCCCCCceEe
Q psy5670 607 TYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHKNIPDFYI 686 (1269)
Q Consensus 607 ~~LdLs~N~l~~~~~~~~~~~L~~L~Ls~N~i~~~~~~~f~~~~~L~~LdLs~N~l~~l~~~~~~~~~~~~~~~l~~l~l 686 (1269)
+.++.+++.++.++. .++++|++|+|++|+++++.+..|..+++|+.|+|++|+++.+.+..+ ..+.+|+++++
T Consensus 14 ~~~~c~~~~l~~ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~l 87 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPV-GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAF-----TGLALLEQLDL 87 (285)
T ss_dssp CEEECCSSCCSSCCT-TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTT-----TTCTTCCEEEC
T ss_pred eEEEcCcCCcccCCc-CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhc-----CCccCCCEEeC
Confidence 456666666666543 455667777777777777766667777777777777777776655443 23455666666
Q ss_pred cCCccccccCChhHHhhccccccCCCcccccCccccccccccCCCcccccccCCCccccccccCcccccccccCCCCccc
Q psy5670 687 GENPFQCDCNMQWLQSYSVNKERNKPNLVDLDTVTCKLLYNRANPAILLKEAHSNQFLCEYETNCAPLCHCCDFDACDCE 766 (1269)
Q Consensus 687 ~~Np~~c~c~~~~l~~~~~~~~~~~~~~~~l~~~~c~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 766 (1269)
++|+..-+ + ...
T Consensus 88 ~~n~~l~~----------------------~---------------------~~~------------------------- 99 (285)
T 1ozn_A 88 SDNAQLRS----------------------V---------------------DPA------------------------- 99 (285)
T ss_dssp CSCTTCCC----------------------C---------------------CTT-------------------------
T ss_pred CCCCCccc----------------------c---------------------CHH-------------------------
Confidence 65541000 0 000
Q ss_pred CCCCCCceecCCCCCcceeeecCCCCccccCCCCCCCCCcEEEecCCCCCCcCCCcCCCCCCccEEEccCcCcccccccc
Q psy5670 767 MTCPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKT 846 (1269)
Q Consensus 767 ~~cp~~C~c~~~~~~~~~~v~c~~~~l~~~~p~~~p~~~~~l~l~~n~i~~l~~~~f~~~~~L~~L~l~~n~i~~i~~~~ 846 (1269)
.+..+ ..+++|++++|.++.+++..|.++++|++|++++|+++.+.+..
T Consensus 100 -------------------------~~~~l------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 148 (285)
T 1ozn_A 100 -------------------------TFHGL------GRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDT 148 (285)
T ss_dssp -------------------------TTTTC------TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred -------------------------HhcCC------cCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhH
Confidence 00000 24588999999999999899999999999999999999999999
Q ss_pred ccCCCCCCEEeCCCCCCcccCcccccCCcccCeeecccccCcccChhhhhcCcccceEeccCccceeeecc-c-ccCCcc
Q psy5670 847 FNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVW-H-LSSQIQ 924 (1269)
Q Consensus 847 f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~-~-~~~~l~ 924 (1269)
|..+++|+.|+|++|+++.+++..|.++++|++|+|++|+|+.+.+..|..+++|+.|+|++|+++.+++. + .+++|+
T Consensus 149 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 228 (285)
T 1ozn_A 149 FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQ 228 (285)
T ss_dssp TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCC
T ss_pred hccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987 6 789999
Q ss_pred EEEeeCCcccccCCcHHHHHHHHHhccCCcCccCcceeccCCccceeeee
Q psy5670 925 SITLTSNPWSCDCDFTEKFRDYLQRSRSSVHDISQIRCMTGSEVGFTIMR 974 (1269)
Q Consensus 925 ~l~l~~Np~~C~C~~~~~~~~w~~~~~~~i~~~~~~~C~~p~~~~~~~~~ 974 (1269)
.|++++|||.|+|+. .|+..|++.... ....+.|..|+..+|..++
T Consensus 229 ~L~l~~N~~~c~~~~-~~~~~~l~~~~~---~~~~~~c~~p~~l~g~~l~ 274 (285)
T 1ozn_A 229 YLRLNDNPWVCDCRA-RPLWAWLQKFRG---SSSEVPCSLPQRLAGRDLK 274 (285)
T ss_dssp EEECCSSCEECSGGG-HHHHHHHHHCCS---EECCCBEEESGGGTTCBGG
T ss_pred EEeccCCCccCCCCc-HHHHHHHHhccc---ccCccccCCchHhCCcChh
Confidence 999999999999996 689999987542 3457899999988664433
No 60
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.94 E-value=1.4e-26 Score=250.19 Aligned_cols=197 Identities=25% Similarity=0.505 Sum_probs=179.0
Q ss_pred CCCCCCceecCCCCCcceeeecCCCCccccCCCCCCCCCcEEEecCCCCCCcC-CCcCCCCCCccEEEccCcCccccccc
Q psy5670 767 MTCPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVG-SHSFIGRKKLQILFLNSSHVETIHNK 845 (1269)
Q Consensus 767 ~~cp~~C~c~~~~~~~~~~v~c~~~~l~~~~p~~~p~~~~~l~l~~n~i~~l~-~~~f~~~~~L~~L~l~~n~i~~i~~~ 845 (1269)
..||..|.|.. ..++|++.+++.+ |..+|..+++|++++|.|+.++ ...|.++++|+.|+|++|+|+.+++.
T Consensus 3 ~~CP~~C~C~~------~~l~~s~n~l~~i-P~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~ 75 (220)
T 2v70_A 3 LACPEKCRCEG------TTVDCSNQKLNKI-PEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEG 75 (220)
T ss_dssp -CCCTTCEEET------TEEECCSSCCSSC-CSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTT
T ss_pred CCCCCCCEECC------CEeEeCCCCcccC-ccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHH
Confidence 46999999953 4799999999998 9999999999999999999995 46799999999999999999999999
Q ss_pred cccCCCCCCEEeCCCCCCcccCcccccCCcccCeeecccccCcccChhhhhcCcccceEeccCccceeeecc-c-ccCCc
Q psy5670 846 TFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVW-H-LSSQI 923 (1269)
Q Consensus 846 ~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~-~-~~~~l 923 (1269)
+|.++++|++|+|++|+|+.+++.+|.++++|++|+|++|+|+.+++..|..+++|++|+|++|+|+++++. | .+++|
T Consensus 76 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 155 (220)
T 2v70_A 76 AFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSL 155 (220)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTC
T ss_pred HhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999887 7 78999
Q ss_pred cEEEeeCCcccccCCcHHHHHHHHHhccCCcCccCcceeccCCccceeeee
Q psy5670 924 QSITLTSNPWSCDCDFTEKFRDYLQRSRSSVHDISQIRCMTGSEVGFTIMR 974 (1269)
Q Consensus 924 ~~l~l~~Np~~C~C~~~~~~~~w~~~~~~~i~~~~~~~C~~p~~~~~~~~~ 974 (1269)
+.|++++|||.|+|++ .|+..|++..... .....|..|...++..+.
T Consensus 156 ~~L~L~~N~l~c~c~l-~~l~~~~~~~~~~---~~~~~C~~P~~l~g~~l~ 202 (220)
T 2v70_A 156 STLNLLANPFNCNCYL-AWLGEWLRKKRIV---TGNPRCQKPYFLKEIPIQ 202 (220)
T ss_dssp CEEECCSCCEECSGGG-HHHHHHHHHSCCB---CCCCEEEESGGGTTEEGG
T ss_pred CEEEecCcCCcCCCch-HHHHHHHHhcCcc---ccCCccCCChHHCCCChh
Confidence 9999999999999996 7999999865332 356799999988764443
No 61
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.94 E-value=9.6e-26 Score=252.42 Aligned_cols=232 Identities=24% Similarity=0.404 Sum_probs=201.9
Q ss_pred cccEEEcCCCccccccCCcccCCccEEEccCcccccccCCccCCCCCccEEEcCCCCcccccccccccccCCCCCCCCce
Q psy5670 605 RLTYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHKNIPDF 684 (1269)
Q Consensus 605 ~L~~LdLs~N~l~~~~~~~~~~~L~~L~Ls~N~i~~~~~~~f~~~~~L~~LdLs~N~l~~l~~~~~~~~~~~~~~~l~~l 684 (1269)
..+.+++++++++.++. .++.+++.|+|++|+++++.+..|.++++|+.|+|++|+|+.++...+.
T Consensus 17 ~~~~l~~~~~~l~~ip~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~------------- 82 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPS-NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFK------------- 82 (270)
T ss_dssp TTTEEECTTSCCSSCCS-CCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTS-------------
T ss_pred CCCEEEccCCCCCccCC-CCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhc-------------
Confidence 46788999999988664 5678899999999999999888999999999999999988765432110
Q ss_pred EecCCccccccCChhHHhhccccccCCCcccccCccccccccccCCCcccccccCCCccccccccCcccccccccCCCCc
Q psy5670 685 YIGENPFQCDCNMQWLQSYSVNKERNKPNLVDLDTVTCKLLYNRANPAILLKEAHSNQFLCEYETNCAPLCHCCDFDACD 764 (1269)
Q Consensus 685 ~l~~Np~~c~c~~~~l~~~~~~~~~~~~~~~~l~~~~c~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 764 (1269)
T Consensus 83 -------------------------------------------------------------------------------- 82 (270)
T 2o6q_A 83 -------------------------------------------------------------------------------- 82 (270)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCCceecCCCCCcceeeecCCCCccccCCCCCCCCCcEEEecCCCCCCcCCCcCCCCCCccEEEccCcCcccccc
Q psy5670 765 CEMTCPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHN 844 (1269)
Q Consensus 765 ~~~~cp~~C~c~~~~~~~~~~v~c~~~~l~~~~p~~~p~~~~~l~l~~n~i~~l~~~~f~~~~~L~~L~l~~n~i~~i~~ 844 (1269)
++ ..+++|++++|.++.++...|.++++|+.|++++|+++.+.+
T Consensus 83 ---------------------------~l---------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 126 (270)
T 2o6q_A 83 ---------------------------EL---------KNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPP 126 (270)
T ss_dssp ---------------------------SC---------TTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCT
T ss_pred ---------------------------CC---------CCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCH
Confidence 00 124778888899999998899999999999999999999999
Q ss_pred ccccCCCCCCEEeCCCCCCcccCcccccCCcccCeeecccccCcccChhhhhcCcccceEeccCccceeeecc-c-ccCC
Q psy5670 845 KTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVW-H-LSSQ 922 (1269)
Q Consensus 845 ~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~-~-~~~~ 922 (1269)
..|..+++|+.|+|++|+++.+++..|.++++|++|+|++|+|+.+++..|..+++|++|+|++|+|+.+++. + .+++
T Consensus 127 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 206 (270)
T 2o6q_A 127 RVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEK 206 (270)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred HHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998 6 7899
Q ss_pred ccEEEeeCCcccccCCcHHHHHHHHHhccC-CcCccCcceeccCC
Q psy5670 923 IQSITLTSNPWSCDCDFTEKFRDYLQRSRS-SVHDISQIRCMTGS 966 (1269)
Q Consensus 923 l~~l~l~~Np~~C~C~~~~~~~~w~~~~~~-~i~~~~~~~C~~p~ 966 (1269)
|+.|++++|||.|+|+...|+..|++.... .+.+.+...|..+.
T Consensus 207 L~~L~l~~N~~~c~c~~~~~~~~~l~~~~~~~~~~~~~~~C~~~~ 251 (270)
T 2o6q_A 207 LKMLQLQENPWDCTCNGIIYMAKWLKKKADEGLGGVDTAGCEKGG 251 (270)
T ss_dssp CCEEECCSSCBCCSSSSSHHHHHHHHHHHHTTCSSTTCCBBSSSC
T ss_pred CCEEEecCCCeeCCCccHHHHHHHHHhhccccccCccccccCCCC
Confidence 999999999999999855799999987643 35566778997644
No 62
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.93 E-value=6.1e-26 Score=259.67 Aligned_cols=289 Identities=20% Similarity=0.200 Sum_probs=190.0
Q ss_pred hhHHHHHHHhhhhhhhccccCCCCCCCc--ccccccCCcccccCCCCCCCCceEEEEeeecccCcccCCcccccccccee
Q psy5670 10 ITVLISALGLVSASISKALRYQAPDECK--WFAVTSEGAEIEVPSAAEPDQEVALVCKLRTINSEIENTNFSIIQAQYTV 87 (1269)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~cp~~C~--c~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~i~~~~~~~~~s~~~~~~~~ 87 (1269)
..+++.+...+......+.|....++|. |.||+|+. . ....+++
T Consensus 8 ~~aL~~~k~~~~~~~~l~~W~~~~~~C~~~w~gv~C~~---------------------~-------------~~~~~l~ 53 (313)
T 1ogq_A 8 KQALLQIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDT---------------------D-------------TQTYRVN 53 (313)
T ss_dssp HHHHHHHHHHTTCCGGGTTCCTTSCTTTTCSTTEEECC---------------------S-------------SSCCCEE
T ss_pred HHHHHHHHHhcCCcccccCCCCCCCCCcCCCcceEeCC---------------------C-------------CCCceEE
Confidence 4556666654433333456766778898 98876642 0 0135688
Q ss_pred EEEEEeCCceeecc--CCCchhccCCcccceeEecc-ccCCCCChhhccCCccCceeecccccCCCCccceeccchhhhh
Q psy5670 88 RLRIECGDMLFFQS--SLSPGSFQTLIDLKDLSVEF-CKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHNVFTD 164 (1269)
Q Consensus 88 ~L~L~~~~~~~~~~--~i~~~~f~~l~~L~~L~L~~-~~i~~i~~~~f~~l~~L~~L~L~~~~~~~~~~~~~i~~~~f~~ 164 (1269)
+|+|+++.+ .+ .++ .+|+++++|++|+|++ |.+....+..|.++++|++|+++++.. ....|..| .
T Consensus 54 ~L~L~~~~l---~~~~~~~-~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l------~~~~p~~~-~ 122 (313)
T 1ogq_A 54 NLDLSGLNL---PKPYPIP-SSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNV------SGAIPDFL-S 122 (313)
T ss_dssp EEEEECCCC---SSCEECC-GGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECC------EEECCGGG-G
T ss_pred EEECCCCCc---cCCcccC-hhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCee------CCcCCHHH-h
Confidence 999999983 22 344 4899999999999995 777655556788888888888875543 12446667 7
Q ss_pred cCCCCCEEEccCCCCccCCcccCCCCCCCcEEECCCCCCCCCCccccCCCCcccCCC-cccEEEcCCCCCCccCcccCCC
Q psy5670 165 ELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGI-NLRVLDLSNNSFDSLPAEGFSR 243 (1269)
Q Consensus 165 ~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~ 243 (1269)
++++|++|++++|.+....+..|..+++|++|++++|++++..+..+.. ++ +|++|++++|.++...+..|..
T Consensus 123 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~------l~~~L~~L~L~~N~l~~~~~~~~~~ 196 (313)
T 1ogq_A 123 QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS------FSKLFTSMTISRNRLTGKIPPTFAN 196 (313)
T ss_dssp GCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGC------CCTTCCEEECCSSEEEEECCGGGGG
T ss_pred CCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhh------hhhcCcEEECcCCeeeccCChHHhC
Confidence 8888888888888877544445677778888888887776544444433 33 6777777777777555556666
Q ss_pred CCCCCEEEccCCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCCcccccCcccccCCCCCCEEE
Q psy5670 244 LSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLD 323 (1269)
Q Consensus 244 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 323 (1269)
++ |+.|++++|.+++..+..|.++++|+.|++++|.++..++. +..+++|++|++++|.+++..|..|..+++|+.|+
T Consensus 197 l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 274 (313)
T 1ogq_A 197 LN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLN 274 (313)
T ss_dssp CC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEE
T ss_pred Cc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEE
Confidence 65 77777777777766666677777777777777766655444 45566677777776666665566666666666666
Q ss_pred CcCCCCCccccCcccccCCCCccEEEcCCCC
Q psy5670 324 LSNNELTEEWVNAATFSGLHRLVVLNIAYNK 354 (1269)
Q Consensus 324 L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~ 354 (1269)
+++|.+++. + +. ...+++|+.+++++|.
T Consensus 275 Ls~N~l~~~-i-p~-~~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 275 VSFNNLCGE-I-PQ-GGNLQRFDVSAYANNK 302 (313)
T ss_dssp CCSSEEEEE-C-CC-STTGGGSCGGGTCSSS
T ss_pred CcCCccccc-C-CC-CccccccChHHhcCCC
Confidence 666666542 1 11 2455555555555554
No 63
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.93 E-value=7.1e-26 Score=258.83 Aligned_cols=256 Identities=25% Similarity=0.327 Sum_probs=149.0
Q ss_pred CCCCCcccccccCCcccccCCCCCCCCceEEEEeeecccCcccCCccccccccceeEEEEEeCCceeeccCCCchhccCC
Q psy5670 32 APDECKWFAVTSEGAEIEVPSAAEPDQEVALVCKLRTINSEIENTNFSIIQAQYTVRLRIECGDMLFFQSSLSPGSFQTL 111 (1269)
Q Consensus 32 cp~~C~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~i~~~~~~~~~s~~~~~~~~~L~L~~~~~~~~~~~i~~~~f~~l 111 (1269)
||+.|.|... .+.|....++.+|. ..+.++++|+|+++. .+.+++..|+++
T Consensus 1 CP~~C~C~~~-------------------~l~c~~~~l~~ip~------~~~~~l~~L~L~~n~----l~~i~~~~~~~l 51 (306)
T 2z66_A 1 CPSRCSCSGT-------------------EIRCNSKGLTSVPT------GIPSSATRLELESNK----LQSLPHGVFDKL 51 (306)
T ss_dssp CCTTCEEETT-------------------EEECCSSCCSSCCS------CCCTTCCEEECCSSC----CCCCCTTTTTTC
T ss_pred CcCCCeeCCC-------------------EEEcCCCCcccCCC------CCCCCCCEEECCCCc----cCccCHhHhhcc
Confidence 9999999742 57888778887762 224567777777777 446666667777
Q ss_pred cccceeEeccccCCCCC--hhhccCCccCceeecccccCCCCccceeccchhhhhcCCCCCEEEccCCCCccCCc-ccCC
Q psy5670 112 IDLKDLSVEFCKIGNLS--AGSFRGLRKLKTLTLRTHNTDWSTMSLDISHNVFTDELQSLESLDLSMNSIWTLPD-AIFC 188 (1269)
Q Consensus 112 ~~L~~L~L~~~~i~~i~--~~~f~~l~~L~~L~L~~~~~~~~~~~~~i~~~~f~~~l~~L~~L~Ls~n~l~~l~~-~~~~ 188 (1269)
++|++|+|++|.++.+. +.++.++++|++|+++++.. ...+..| .++++|++|++++|.+..++. ..|.
T Consensus 52 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i-------~~l~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~ 123 (306)
T 2z66_A 52 TQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGV-------ITMSSNF-LGLEQLEHLDFQHSNLKQMSEFSVFL 123 (306)
T ss_dssp TTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSE-------EEEEEEE-ETCTTCCEEECTTSEEESSTTTTTTT
T ss_pred ccCCEEECCCCccCcccCcccccccccccCEEECCCCcc-------ccChhhc-CCCCCCCEEECCCCcccccccchhhh
Confidence 77777777777765442 23445566666666654322 1122334 556666666666666665554 4455
Q ss_pred CCCCCcEEECCCCCCCCCCccccCCCCcccCCCcccEEEcCCCCCCc-cCcccCCCCCCCCEEEccCCCCcccchhhhcC
Q psy5670 189 PLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDS-LPAEGFSRLSRLQELYLQGNILTFLADHALDG 267 (1269)
Q Consensus 189 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 267 (1269)
.+++|++|++++|.+....+..+.. +++|++|++++|.++. ..+..+..+++|++|++++|.++++.+..|.+
T Consensus 124 ~l~~L~~L~l~~n~l~~~~~~~~~~------l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 197 (306)
T 2z66_A 124 SLRNLIYLDISHTHTRVAFNGIFNG------LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 197 (306)
T ss_dssp TCTTCCEEECTTSCCEECSTTTTTT------CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTT
T ss_pred hccCCCEEECCCCcCCccchhhccc------CcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcC
Confidence 6666666666666555444433322 3456666666665554 23344555555666666655555555555555
Q ss_pred CCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCCcccccCcccccCCC-CCCEEECcCCCCC
Q psy5670 268 LNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLT-QLIVLDLSNNELT 330 (1269)
Q Consensus 268 l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~ 330 (1269)
+++|++|++++|+++.+++..|..+++|++|++++|.+++..+..+..++ +|+.|++++|.+.
T Consensus 198 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 198 LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp CTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred CCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCee
Confidence 55555555555555555554555555555555555555555555555542 5555555555544
No 64
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.93 E-value=5.8e-25 Score=256.62 Aligned_cols=282 Identities=19% Similarity=0.270 Sum_probs=189.0
Q ss_pred cCCCCCEEEccCCCCccCCcccCCCCCCCcEEECCCCCCCCCCccccCCCCcccCCCcccEEEcCCCCCCccCcccCCCC
Q psy5670 165 ELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRL 244 (1269)
Q Consensus 165 ~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 244 (1269)
.++.....+++++.++.+|...+ ++|++|++++|+++.++...+.. +++|++|++++|.++.+++..|.++
T Consensus 29 ~C~~~~~c~~~~~~l~~iP~~~~---~~L~~L~l~~n~i~~~~~~~~~~------l~~L~~L~L~~n~l~~~~~~~~~~l 99 (353)
T 2z80_A 29 SCDRNGICKGSSGSLNSIPSGLT---EAVKSLDLSNNRITYISNSDLQR------CVNLQALVLTSNGINTIEEDSFSSL 99 (353)
T ss_dssp EECTTSEEECCSTTCSSCCTTCC---TTCCEEECTTSCCCEECTTTTTT------CTTCCEEECTTSCCCEECTTTTTTC
T ss_pred CCCCCeEeeCCCCCccccccccc---ccCcEEECCCCcCcccCHHHhcc------CCCCCEEECCCCccCccCHhhcCCC
Confidence 34555567778888888877543 47777788777777666544543 5677777777777777776677777
Q ss_pred CCCCEEEccCCCCcccchhhhcCCCCCcEEEccCCCCCCCCc-ccccCCCCCcEEEeeCC-cccccCcccccCCCCCCEE
Q psy5670 245 SRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPP-ELFNQSRDLKEVYLQNN-SINVLAPGIFNVLTQLIVL 322 (1269)
Q Consensus 245 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~-~~f~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L 322 (1269)
++|++|++++|.++.+.+..|.++++|++|++++|+++.++. ..|..+++|++|++++| .+..+.+..|.++++|++|
T Consensus 100 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L 179 (353)
T 2z80_A 100 GSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEEL 179 (353)
T ss_dssp TTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEE
T ss_pred CCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEE
Confidence 777777777777777776667777777777777777777766 56677777777777776 4666666666666777777
Q ss_pred ECcCCCCCccccCcccccCCCCccEEEcCCCCCcccCchhhcCCCCCcEEEccCCcccccccccccCCCCCcEEEccCCc
Q psy5670 323 DLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNK 402 (1269)
Q Consensus 323 ~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~ 402 (1269)
++++|.+.+ ..+..+..+++|++|++++|.+..++...+..+++|+.|++++|.++.++...+..
T Consensus 180 ~l~~n~l~~--~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~------------- 244 (353)
T 2z80_A 180 EIDASDLQS--YEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELST------------- 244 (353)
T ss_dssp EEEETTCCE--ECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC-----------------
T ss_pred ECCCCCcCc--cCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccccccc-------------
Confidence 777666655 33555666666666666666665555544555566666666666655443222111
Q ss_pred ccccCcccccCCCCCCEEEccCCCCCcc----ChhhhcCCCCCcEEEccCCCCCCchhh-hcCCCCCcEEECCCCCCCcc
Q psy5670 403 LKRIESNSLDSLTALSVLSLDNNELEYI----EENALKNSTSLQDFHLNGNKLTEIPKV-LRNLHSLKTLDLGDNLITEI 477 (1269)
Q Consensus 403 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~Ls~n~i~~~ 477 (1269)
......++.++++++.+.+. .+..+..+++|++|++++|.++.+|.. +..+++|++|++++|.+...
T Consensus 245 --------~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 245 --------GETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp ----------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred --------ccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCc
Confidence 11234556666666655542 245677888888888888888888876 47888888888888888765
Q ss_pred C
Q psy5670 478 N 478 (1269)
Q Consensus 478 ~ 478 (1269)
.
T Consensus 317 ~ 317 (353)
T 2z80_A 317 C 317 (353)
T ss_dssp H
T ss_pred C
Confidence 4
No 65
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=2e-24 Score=242.68 Aligned_cols=161 Identities=21% Similarity=0.365 Sum_probs=141.1
Q ss_pred CcEEEecCCCCCCcCCCcCCCCCCccEEEccCcCccccc-cccccCCCCCCEEeCCCCCCcccCcccccCCcccC----e
Q psy5670 805 ATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIH-NKTFNGLKELIILRLDDNRLTEIRGYEFERLENLR----E 879 (1269)
Q Consensus 805 ~~~l~l~~n~i~~l~~~~f~~~~~L~~L~l~~n~i~~i~-~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~----~ 879 (1269)
+++|++++|.++.++...|.++++|++|++++|+++.+. +..|.++++|+.|+|++|+++.+++..|..+.+|+ +
T Consensus 102 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~ 181 (276)
T 2z62_A 102 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS 181 (276)
T ss_dssp CCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEE
T ss_pred ccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhcccccee
Confidence 467888888888888878888999999999999999876 88999999999999999999999998998888888 8
Q ss_pred eecccccCcccChhhhhcCcccceEeccCccceeeecc-c-ccCCccEEEeeCCcccccCCcHHHHHHHHHhccCCcCcc
Q psy5670 880 LYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVW-H-LSSQIQSITLTSNPWSCDCDFTEKFRDYLQRSRSSVHDI 957 (1269)
Q Consensus 880 L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~-~-~~~~l~~l~l~~Np~~C~C~~~~~~~~w~~~~~~~i~~~ 957 (1269)
|+|++|+|+.+++..|... +|+.|+|++|+|+.+++. + .+++|+.|++++|||.|+|+...|+..|++..... ..
T Consensus 182 L~ls~n~l~~~~~~~~~~~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l~~l~~~~~~~~~~--~~ 258 (276)
T 2z62_A 182 LDLSLNPMNFIQPGAFKEI-RLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQK--EQ 258 (276)
T ss_dssp EECCSSCCCEECTTSSCSC-CEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTTHHHHHHHHHTGGG--BC
T ss_pred eecCCCcccccCccccCCC-cccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCchHHHHHHHHhcccc--cC
Confidence 9999999999999888654 899999999999999988 6 78999999999999999998778999999876433 34
Q ss_pred CcceeccCCcc
Q psy5670 958 SQIRCMTGSEV 968 (1269)
Q Consensus 958 ~~~~C~~p~~~ 968 (1269)
+...|..|...
T Consensus 259 ~~~~C~~~~~~ 269 (276)
T 2z62_A 259 GSAKCSGSGKP 269 (276)
T ss_dssp SCCBBTTTCCB
T ss_pred CCceeeCCCCc
Confidence 56799887643
No 66
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.92 E-value=1.2e-24 Score=248.78 Aligned_cols=248 Identities=20% Similarity=0.256 Sum_probs=131.4
Q ss_pred CcccEEEcCCCCCCc--cCcccCCCCCCCCEEEccC-CCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcE
Q psy5670 221 INLRVLDLSNNSFDS--LPAEGFSRLSRLQELYLQG-NILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKE 297 (1269)
Q Consensus 221 ~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~ 297 (1269)
.+++.|+|++|.+++ ..+..|.++++|++|++++ |.+.+..+..|.++++|++|++++|.++...+..|..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 356666666666664 3334566666666666663 5555555555555566666666555555333334455555555
Q ss_pred EEeeCCcccccCcccccCCCCCCEEECcCCCCCccccCcccccCCCCccEEEcCCCCCcccCchhhcCCC-CCcEEEccC
Q psy5670 298 VYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLY-RLQVLHLEN 376 (1269)
Q Consensus 298 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~ 376 (1269)
|++++|.+++..+..|..+++|++|++++|.+.+ ..+..+..++ +|++|++++
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~--------------------------~~p~~l~~l~~~L~~L~L~~ 183 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISG--------------------------AIPDSYGSFSKLFTSMTISR 183 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEE--------------------------ECCGGGGCCCTTCCEEECCS
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccC--------------------------cCCHHHhhhhhcCcEEECcC
Confidence 5555555554444444455555555555544432 2233333333 444444444
Q ss_pred CcccccccccccCCCCCcEEEccCCcccccCcccccCCCCCCEEEccCCCCCccChhhhcCCCCCcEEEccCCCCC-Cch
Q psy5670 377 NQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLT-EIP 455 (1269)
Q Consensus 377 n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~-~lp 455 (1269)
|.++...+..|..++ |+.|++++|.+++..+..+..+++|+.|++++|.+.+..+. +..+++|++|++++|.++ .+|
T Consensus 184 N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p 261 (313)
T 1ogq_A 184 NRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLP 261 (313)
T ss_dssp SEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCC
T ss_pred CeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCC
Confidence 444433333444443 55555555555555455555555555555555555444333 445555666666666555 455
Q ss_pred hhhcCCCCCcEEECCCCCCCccChhhhhccccCCeeeccCCc
Q psy5670 456 KVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENN 497 (1269)
Q Consensus 456 ~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~ 497 (1269)
..+..+++|++|++++|.+++..+.. ..+++|+.|++++|+
T Consensus 262 ~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 262 QGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp GGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred hHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 55666666666666666666544433 455556666666655
No 67
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.92 E-value=1.1e-23 Score=260.65 Aligned_cols=243 Identities=23% Similarity=0.284 Sum_probs=147.7
Q ss_pred CCcEEEccCCcccccCcccccCCCCCCEEEccCCCCCccChhhhcCCCCCcEEEccCCCCCCchhhhcCCCCCcEEECCC
Q psy5670 392 NLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGD 471 (1269)
Q Consensus 392 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~ 471 (1269)
+|+.|++++|.++.+.. .+++|++|+|++|.++.++. .+++|++|++++|.++.+|. .+++|+.|++++
T Consensus 62 ~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~ 130 (622)
T 3g06_A 62 HITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSLPV----LPPGLLELSIFSNPLTHLPA---LPSGLCKLWIFG 130 (622)
T ss_dssp TCSEEEECSCCCSCCCC----CCTTCCEEEECSCCCSCCCC----CCTTCCEEEECSCCCCCCCC---CCTTCCEEECCS
T ss_pred CCcEEEecCCCCCCCCC----cCCCCCEEEcCCCcCCcCCC----CCCCCCEEECcCCcCCCCCC---CCCCcCEEECCC
Confidence 44444444444443322 23444444444444444332 34455555555555555544 334555555555
Q ss_pred CCCCccChhhhhccccCCeeeccCCcCCCCChhhhcCCCCCCEEEcCCCccccccccccCCCCCccEEEcccccccccCC
Q psy5670 472 NLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGG 551 (1269)
Q Consensus 472 n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~l~~ 551 (1269)
|.+++++. .+++|+.|++++|.++.++. .+++|+.|++++|++++++ ..+++|+.|++++|.++.+|.
T Consensus 131 N~l~~lp~----~l~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N~l~~l~----~~~~~L~~L~Ls~N~l~~l~~ 198 (622)
T 3g06_A 131 NQLTSLPV----LPPGLQELSVSDNQLASLPA----LPSELCKLWAYNNQLTSLP----MLPSGLQELSVSDNQLASLPT 198 (622)
T ss_dssp SCCSCCCC----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC
T ss_pred CCCCcCCC----CCCCCCEEECcCCcCCCcCC----ccCCCCEEECCCCCCCCCc----ccCCCCcEEECCCCCCCCCCC
Confidence 55555433 13555566666665555542 2345666666666666554 234566666666666666554
Q ss_pred cCCCCCCCcEEEccCCcCccccccccCCCccEEECCCCCcccccccccccccccccEEEcCCCccccccCCcccCCccEE
Q psy5670 552 LFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPHSVENL 631 (1269)
Q Consensus 552 ~~~~l~~L~~L~Ls~n~l~~~~~~~lp~~L~~L~Ls~n~l~~~~~~~~l~~~~~L~~LdLs~N~l~~~~~~~~~~~L~~L 631 (1269)
. +++|+.|++++|.++.++. .+++|+.|++++|+|+.++. .+++|+.|++++|+|++++. .+++|+.|
T Consensus 199 ~---~~~L~~L~L~~N~l~~l~~--~~~~L~~L~Ls~N~L~~lp~-----~l~~L~~L~Ls~N~L~~lp~--~~~~L~~L 266 (622)
T 3g06_A 199 L---PSELYKLWAYNNRLTSLPA--LPSGLKELIVSGNRLTSLPV-----LPSELKELMVSGNRLTSLPM--LPSGLLSL 266 (622)
T ss_dssp C---CTTCCEEECCSSCCSSCCC--CCTTCCEEECCSSCCSCCCC-----CCTTCCEEECCSSCCSCCCC--CCTTCCEE
T ss_pred c---cchhhEEECcCCcccccCC--CCCCCCEEEccCCccCcCCC-----CCCcCcEEECCCCCCCcCCc--ccccCcEE
Confidence 3 3566666666666665542 34567777777777776652 34678888888888887766 56789999
Q ss_pred EccCcccccccCCccCCCCCccEEEcCCCCccccccccc
Q psy5670 632 FLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTAL 670 (1269)
Q Consensus 632 ~Ls~N~i~~~~~~~f~~~~~L~~LdLs~N~l~~l~~~~~ 670 (1269)
+|++|+|+.+ |..|.++++|+.|+|++|.+++..+..+
T Consensus 267 ~Ls~N~L~~l-p~~l~~l~~L~~L~L~~N~l~~~~~~~l 304 (622)
T 3g06_A 267 SVYRNQLTRL-PESLIHLSSETTVNLEGNPLSERTLQAL 304 (622)
T ss_dssp ECCSSCCCSC-CGGGGGSCTTCEEECCSCCCCHHHHHHH
T ss_pred eCCCCCCCcC-CHHHhhccccCEEEecCCCCCCcCHHHH
Confidence 9999999865 5678889999999999999887665443
No 68
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.91 E-value=4.5e-24 Score=241.08 Aligned_cols=205 Identities=28% Similarity=0.417 Sum_probs=109.5
Q ss_pred CCCEEEccCCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCCc-ccccCcccccCCCCCCEEEC
Q psy5670 246 RLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNS-INVLAPGIFNVLTQLIVLDL 324 (1269)
Q Consensus 246 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L 324 (1269)
+|++|++++|.++.+.+..|.++++|++|++++|.++.+++..|..+++|++|++++|. +..+.+..|..+++|++|++
T Consensus 33 ~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l 112 (285)
T 1ozn_A 33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL 112 (285)
T ss_dssp TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred CceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEEC
Confidence 44444444444444444444444444444444444444433334444444444444443 44443444444444555555
Q ss_pred cCCCCCccccCcccccCCCCccEEEcCCCCCcccCchhhcCCCCCcEEEccCCcccccccccccCCCCCcEEEccCCccc
Q psy5670 325 SNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLK 404 (1269)
Q Consensus 325 ~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~ 404 (1269)
++|.+.. +.+..+.++++|++|++++|.+..+++..|..+++|++|++++|.++.++...|..+++|+.|++++|.++
T Consensus 113 ~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 190 (285)
T 1ozn_A 113 DRCGLQE--LGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA 190 (285)
T ss_dssp TTSCCCC--CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCcCCE--ECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCccc
Confidence 5444443 22334444555555555555555555555555566666666666666555555666666666666666666
Q ss_pred ccCcccccCCCCCCEEEccCCCCCccChhhhcCCCCCcEEEccCCCCC
Q psy5670 405 RIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLT 452 (1269)
Q Consensus 405 ~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~ 452 (1269)
+..+..+..+++|+.|++++|.+.++.+..+..+++|+.|++++|.+.
T Consensus 191 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 191 HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred ccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 665556666666666666666666666666666666666666666554
No 69
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.91 E-value=2.7e-26 Score=288.28 Aligned_cols=342 Identities=13% Similarity=0.091 Sum_probs=160.4
Q ss_pred CCcccEEEcCCCCCCccCc----ccCCCCCCCCEEEccCCCCcccc----hhhhcCCCCCcEEEccCCCCCCCCcccccC
Q psy5670 220 GINLRVLDLSNNSFDSLPA----EGFSRLSRLQELYLQGNILTFLA----DHALDGLNSLTVLNLSVNNLVNIPPELFNQ 291 (1269)
Q Consensus 220 l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~ 291 (1269)
+++|++|+|++|.++.... ..+..+++|++|++++|.++++. +..+.++++|++|++++|.+..++ ..+..
T Consensus 163 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~-~~~~~ 241 (592)
T 3ogk_B 163 CRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELV-GFFKA 241 (592)
T ss_dssp CTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGH-HHHHH
T ss_pred CCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHH-HHHhh
Confidence 3445555555554433211 12233455555555555544222 122334455555555555544443 33444
Q ss_pred CCCCcEEEeeCCccc---ccCcccccCCCCCCEEECcCCCCCccccCcccccCCCCccEEEcCCCCCcccCc-hhhcCCC
Q psy5670 292 SRDLKEVYLQNNSIN---VLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDS-SIFKDLY 367 (1269)
Q Consensus 292 l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~ 367 (1269)
+++|++|.++..... ......+..+++|+.|+++++.... .+..+..+++|++|++++|.++.... ..+..++
T Consensus 242 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~---l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~ 318 (592)
T 3ogk_B 242 AANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNE---MPILFPFAAQIRKLDLLYALLETEDHCTLIQKCP 318 (592)
T ss_dssp CTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTT---GGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCT
T ss_pred hhHHHhhcccccccccchHHHHHHhhccccccccCccccchhH---HHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCc
Confidence 555555555432111 1111223445555555555432221 13334445555666665555433222 2234555
Q ss_pred CCcEEEccCCcccc-cccccccCCCCCcEEEccC-----------CcccccCccc-ccCCCCCCEEEccCCCCCccChhh
Q psy5670 368 RLQVLHLENNQIES-IHRNTFASLSNLHTLIMSN-----------NKLKRIESNS-LDSLTALSVLSLDNNELEYIEENA 434 (1269)
Q Consensus 368 ~L~~L~Ls~n~l~~-i~~~~f~~l~~L~~L~Ls~-----------n~l~~~~~~~-~~~l~~L~~L~Ls~n~i~~~~~~~ 434 (1269)
+|++|+++ +.+.. .....+..+++|++|++++ +.+++..... ...+++|++|+++.+.+++.....
T Consensus 319 ~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~ 397 (592)
T 3ogk_B 319 NLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLES 397 (592)
T ss_dssp TCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHH
T ss_pred CCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHH
Confidence 66666665 22221 1111223455566666652 3443322111 234566666666655555544444
Q ss_pred hcC-CCCCcEEEcc----CCCCCCc------hhhhcCCCCCcEEECCCCC--CCccChhhhh-ccccCCeeeccCCcCCC
Q psy5670 435 LKN-STSLQDFHLN----GNKLTEI------PKVLRNLHSLKTLDLGDNL--ITEINNLSLN-SLHQLAGLRLTENNISN 500 (1269)
Q Consensus 435 ~~~-l~~L~~L~Ls----~n~l~~l------p~~l~~l~~L~~L~Ls~n~--i~~~~~~~~~-~l~~L~~L~Ls~n~l~~ 500 (1269)
+.. +++|++|+++ .|.++.. +..+..+++|++|+++.|. +++.....+. .+++|+.|+|++|.++.
T Consensus 398 l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~ 477 (592)
T 3ogk_B 398 IGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESD 477 (592)
T ss_dssp HHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSH
T ss_pred HHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCH
Confidence 443 6666666664 4455542 2234556666666665433 4443333332 35666666666666643
Q ss_pred CC-hhhhcCCCCCCEEEcCCCcccccccc-ccCCCCCccEEEcccccccccC--CcCCCCCCCcEEEccC
Q psy5670 501 IS-KGVFEKLSVLTILNLASNKIQKVEAG-TFDNNSNLVAIRLDGNYLTDIG--GLFPKLPNLVWLNISE 566 (1269)
Q Consensus 501 i~-~~~f~~l~~L~~L~Ls~n~i~~~~~~-~~~~~~~L~~L~L~~n~l~~l~--~~~~~l~~L~~L~Ls~ 566 (1269)
.. ...+.++++|++|++++|.+++.... .+..+++|+.|++++|+++..+ .....++.+....+..
T Consensus 478 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~ 547 (592)
T 3ogk_B 478 EGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPS 547 (592)
T ss_dssp HHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECC
T ss_pred HHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecC
Confidence 21 22345666677777776665433222 2234566666777666665432 1223345554444433
No 70
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.91 E-value=4.5e-23 Score=255.06 Aligned_cols=270 Identities=26% Similarity=0.304 Sum_probs=208.6
Q ss_pred CCCCCEEEccCCCCccCCcccCCCCCCCcEEECCCCCCCCCCccccCCCCcccCCCcccEEEcCCCCCCccCcccCCCCC
Q psy5670 166 LQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLS 245 (1269)
Q Consensus 166 l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 245 (1269)
..++++|++++|.++.+|...+ ++|++|+|++|+++.++. .+++|++|+|++|.++.++. .++
T Consensus 39 ~~~l~~L~ls~n~L~~lp~~l~---~~L~~L~L~~N~l~~lp~----------~l~~L~~L~Ls~N~l~~lp~----~l~ 101 (622)
T 3g06_A 39 NNGNAVLNVGESGLTTLPDCLP---AHITTLVIPDNNLTSLPA----------LPPELRTLEVSGNQLTSLPV----LPP 101 (622)
T ss_dssp HHCCCEEECCSSCCSCCCSCCC---TTCSEEEECSCCCSCCCC----------CCTTCCEEEECSCCCSCCCC----CCT
T ss_pred CCCCcEEEecCCCcCccChhhC---CCCcEEEecCCCCCCCCC----------cCCCCCEEEcCCCcCCcCCC----CCC
Confidence 3468999999999999988653 789999999999887654 14789999999999998875 578
Q ss_pred CCCEEEccCCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCCcccccCcccccCCCCCCEEECc
Q psy5670 246 RLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLS 325 (1269)
Q Consensus 246 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 325 (1269)
+|++|++++|.++.++. .+++|+.|++++|+++.+|.. +++|++|++++|.+++++. .+++|+.|+++
T Consensus 102 ~L~~L~Ls~N~l~~l~~----~l~~L~~L~L~~N~l~~lp~~----l~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~ 169 (622)
T 3g06_A 102 GLLELSIFSNPLTHLPA----LPSGLCKLWIFGNQLTSLPVL----PPGLQELSVSDNQLASLPA----LPSELCKLWAY 169 (622)
T ss_dssp TCCEEEECSCCCCCCCC----CCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSCCCC----CCTTCCEEECC
T ss_pred CCCEEECcCCcCCCCCC----CCCCcCEEECCCCCCCcCCCC----CCCCCEEECcCCcCCCcCC----ccCCCCEEECC
Confidence 89999999999888764 568899999999999888753 4889999999998887653 35678888888
Q ss_pred CCCCCccccCcccccCCCCccEEEcCCCCCcccCchhhcCCCCCcEEEccCCcccccccccccCCCCCcEEEccCCcccc
Q psy5670 326 NNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKR 405 (1269)
Q Consensus 326 ~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~ 405 (1269)
+|.++. ++ ..+++|+.|++++|.+++++. .+++|+.|++++|.++.++. .+++|+.|++++|++++
T Consensus 170 ~N~l~~--l~----~~~~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N~l~~l~~----~~~~L~~L~Ls~N~L~~ 235 (622)
T 3g06_A 170 NNQLTS--LP----MLPSGLQELSVSDNQLASLPT----LPSELYKLWAYNNRLTSLPA----LPSGLKELIVSGNRLTS 235 (622)
T ss_dssp SSCCSC--CC----CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSSCCC----CCTTCCEEECCSSCCSC
T ss_pred CCCCCC--Cc----ccCCCCcEEECCCCCCCCCCC----ccchhhEEECcCCcccccCC----CCCCCCEEEccCCccCc
Confidence 888876 32 456788888888888887654 24678888888888887663 24678888888888777
Q ss_pred cCcccccCCCCCCEEEccCCCCCccChhhhcCCCCCcEEEccCCCCCCchhhhcCCCCCcEEECCCCCCCccChhhhhcc
Q psy5670 406 IESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSL 485 (1269)
Q Consensus 406 ~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l 485 (1269)
+. ..+++|+.|+|++|.+..++. .+++|+.|+|++|.++.+|..+..+++|+.|++++|.+++..+..+..+
T Consensus 236 lp----~~l~~L~~L~Ls~N~L~~lp~----~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L 307 (622)
T 3g06_A 236 LP----VLPSELKELMVSGNRLTSLPM----LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQALREI 307 (622)
T ss_dssp CC----CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHH
T ss_pred CC----CCCCcCcEEECCCCCCCcCCc----ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCCCCcCHHHHHhc
Confidence 54 345677888888887776654 4567777888887777777777777777777777777777666555544
Q ss_pred c
Q psy5670 486 H 486 (1269)
Q Consensus 486 ~ 486 (1269)
+
T Consensus 308 ~ 308 (622)
T 3g06_A 308 T 308 (622)
T ss_dssp H
T ss_pred c
Confidence 3
No 71
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.91 E-value=6.5e-24 Score=223.81 Aligned_cols=170 Identities=32% Similarity=0.613 Sum_probs=116.5
Q ss_pred CCCCCCceecCCCCCcceeeecCCCCccccCCCCCCCCCcEEEecCCCCCCcCCCcCCCCCCccEEEccCcCcccccccc
Q psy5670 767 MTCPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKT 846 (1269)
Q Consensus 767 ~~cp~~C~c~~~~~~~~~~v~c~~~~l~~~~p~~~p~~~~~l~l~~n~i~~l~~~~f~~~~~L~~L~l~~n~i~~i~~~~ 846 (1269)
..||..|.|. ...++|++.+++.+ |..+|.++++|++++|.|+.++ ..
T Consensus 2 ~~CP~~C~C~------~~~l~~~~~~l~~i-p~~~~~~l~~L~L~~n~i~~ip-------------------------~~ 49 (193)
T 2wfh_A 2 SRCPTECTCL------DTVVRCSNKGLKVL-PKGIPRDVTELYLDGNQFTLVP-------------------------KE 49 (193)
T ss_dssp --CCTTCEEE------TTEEECTTSCCSSC-CSCCCTTCCEEECCSSCCCSCC-------------------------GG
T ss_pred CCCCCCCEeC------CCEEEcCCCCCCcC-CCCCCCCCCEEECCCCcCchhH-------------------------HH
Confidence 3599999995 34688888888777 7766666666666666655554 34
Q ss_pred ccCCCCCCEEeCCCCCCcccCcccccCCcccCeeecccccCcccChhhhhcCcccceEeccCccceeeecc-c-ccCCcc
Q psy5670 847 FNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVW-H-LSSQIQ 924 (1269)
Q Consensus 847 f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~-~-~~~~l~ 924 (1269)
|.++++|+.|+|++|+|+.+++.+|.++++|++|+|++|+|+.+++..|.++++|++|+|++|+|+.+++. | .+++|+
T Consensus 50 ~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 129 (193)
T 2wfh_A 50 LSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALS 129 (193)
T ss_dssp GGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCC
T ss_pred hhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCcccc
Confidence 55555556666666666666655666666666666666666666666666666666666666666666665 4 566788
Q ss_pred EEEeeCCcccccCCcHHHHHHHHHhccCCcCccCcceeccCCccceee
Q psy5670 925 SITLTSNPWSCDCDFTEKFRDYLQRSRSSVHDISQIRCMTGSEVGFTI 972 (1269)
Q Consensus 925 ~l~l~~Np~~C~C~~~~~~~~w~~~~~~~i~~~~~~~C~~p~~~~~~~ 972 (1269)
.|++++|||.|||++ .||..|++... .....+.|+.|+..+|..
T Consensus 130 ~L~L~~N~~~C~c~l-~~l~~~~~~~~---~~~~~~~C~~P~~l~g~~ 173 (193)
T 2wfh_A 130 HLAIGANPLYCDCNM-QWLSDWVKSEY---KEPGIARCAGPGEMADKL 173 (193)
T ss_dssp EEECCSSCEECSGGG-HHHHHHHHHSS---CCCSCCBEEESGGGTTCB
T ss_pred EEEeCCCCeecCCcC-HHHHHHHHhcc---CCCCCcCcCCchHHCCCC
Confidence 899999999999996 79999998753 234568999999987633
No 72
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.90 E-value=2.8e-23 Score=225.86 Aligned_cols=190 Identities=29% Similarity=0.547 Sum_probs=170.5
Q ss_pred CCCCceecCCCCCcceeeecCCCCccccCCCCCCCCCcEEEecCCCCCCcCCCcCCCCCCccEEEccCcCcccccccccc
Q psy5670 769 CPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFN 848 (1269)
Q Consensus 769 cp~~C~c~~~~~~~~~~v~c~~~~l~~~~p~~~p~~~~~l~l~~n~i~~l~~~~f~~~~~L~~L~l~~n~i~~i~~~~f~ 848 (1269)
....|.|. ...|+|++.+++.+ |..+|.+++.|+|++|.|+.+.+..|.++++|+.|+|++|+|+.+++..|.
T Consensus 13 ~~~~~~Cs------~~~v~c~~~~l~~i-p~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~ 85 (229)
T 3e6j_A 13 CPSQCSCS------GTTVDCRSKRHASV-PAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFD 85 (229)
T ss_dssp CCTTCEEE------TTEEECTTSCCSSC-CSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred CCCCCEEe------CCEeEccCCCcCcc-CCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcc
Confidence 34567773 34699999999998 999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCEEeCCCCCCcccCcccccCCcccCeeecccccCcccChhhhhcCcccceEeccCccceeeecc-c-ccCCccEE
Q psy5670 849 GLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVW-H-LSSQIQSI 926 (1269)
Q Consensus 849 ~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~-~-~~~~l~~l 926 (1269)
++++|+.|+|++|+|+.+++..|.++++|++|+|++|+|+.++.. +..+++|++|+|++|+|+.+++. + .+++|+.|
T Consensus 86 ~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 164 (229)
T 3e6j_A 86 SLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRG-IERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHA 164 (229)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTT-GGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCcccccCcc-cccCCCCCEEECCCCcCCccCHHHHhCCCCCCEE
Confidence 999999999999999999999999999999999999999999754 58899999999999999999988 6 78999999
Q ss_pred EeeCCcccccCCcHHHHHHHHHhccCCc--------CccCcceeccCC
Q psy5670 927 TLTSNPWSCDCDFTEKFRDYLQRSRSSV--------HDISQIRCMTGS 966 (1269)
Q Consensus 927 ~l~~Np~~C~C~~~~~~~~w~~~~~~~i--------~~~~~~~C~~p~ 966 (1269)
++++|||.|+|....|++.|++.....+ .+.....|..+.
T Consensus 165 ~l~~N~~~c~c~~~~~l~~~~~~~~~~~~~~~g~~v~~~~~~~C~~~~ 212 (229)
T 3e6j_A 165 YLFGNPWDCECRDIMYLRNWVADHTSIAMRWDGKAVNDPDSAKCAGTN 212 (229)
T ss_dssp ECTTSCBCTTBGGGHHHHHHHHHCGGGEEEESSSEEECTTCSBBTTTC
T ss_pred EeeCCCccCCcchhHHHHHHHHhCccccccccCcccCCCCcCccCCCC
Confidence 9999999999975589999998754333 455677887763
No 73
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.90 E-value=3.1e-25 Score=278.62 Aligned_cols=374 Identities=16% Similarity=0.156 Sum_probs=172.4
Q ss_pred hcCCCCCEEEccCCCC----ccCCccc-----------CCCCCCCcEEECCCCCCCCCCccccCCCCcccCC-CcccEEE
Q psy5670 164 DELQSLESLDLSMNSI----WTLPDAI-----------FCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCG-INLRVLD 227 (1269)
Q Consensus 164 ~~l~~L~~L~Ls~n~l----~~l~~~~-----------~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l-~~L~~L~ 227 (1269)
..+++|++|+++++.. ..+|... +..+++|++|+|++|.+.+.....+... + .+|++|+
T Consensus 70 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~-----~~~~L~~L~ 144 (592)
T 3ogk_B 70 RRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKA-----RADDLETLK 144 (592)
T ss_dssp HHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHH-----HGGGCCEEE
T ss_pred HhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHh-----ccccCcEEE
Confidence 7888899999987542 1122111 1145667777776665544322222110 1 2366666
Q ss_pred cCCCC-CCcc-CcccCCCCCCCCEEEccCCCCcccc----hhhhcCCCCCcEEEccCCCCCCCCc----ccccCCCCCcE
Q psy5670 228 LSNNS-FDSL-PAEGFSRLSRLQELYLQGNILTFLA----DHALDGLNSLTVLNLSVNNLVNIPP----ELFNQSRDLKE 297 (1269)
Q Consensus 228 Ls~n~-l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~Ls~n~l~~l~~----~~f~~l~~L~~ 297 (1269)
|++|. ++.. ......++++|++|++++|.+++.. +..+.++++|++|++++|.++.+.. ..+..+++|++
T Consensus 145 L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~ 224 (592)
T 3ogk_B 145 LDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVS 224 (592)
T ss_dssp EESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCE
T ss_pred CcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcE
Confidence 66654 1110 0111234566666666666554432 1233455666666666666553322 22344566666
Q ss_pred EEeeCCcccccCcccccCCCCCCEEECcCCCCCcc-ccCcccccCCCCccEEEcCCCCCcccCchhhcCCCCCcEEEccC
Q psy5670 298 VYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEE-WVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLEN 376 (1269)
Q Consensus 298 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 376 (1269)
|++++|.+.+++ ..+..+++|+.|+++....... ......+..+++|+.|+++++
T Consensus 225 L~L~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~----------------------- 280 (592)
T 3ogk_B 225 VKVGDFEILELV-GFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM----------------------- 280 (592)
T ss_dssp EECSSCBGGGGH-HHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-----------------------
T ss_pred EeccCccHHHHH-HHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCcccc-----------------------
Confidence 666666555543 4455566666666653211100 011122334444444444443
Q ss_pred CcccccccccccCCCCCcEEEccCCcccccCc-ccccCCCCCCEEEccCCCCCc-cChhhhcCCCCCcEEEccC------
Q psy5670 377 NQIESIHRNTFASLSNLHTLIMSNNKLKRIES-NSLDSLTALSVLSLDNNELEY-IEENALKNSTSLQDFHLNG------ 448 (1269)
Q Consensus 377 n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls~------ 448 (1269)
....++ ..+..+++|++|++++|.+++... ..+..+++|+.|++++ .+.. ..+..+..+++|++|++++
T Consensus 281 -~~~~l~-~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~-~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~ 357 (592)
T 3ogk_B 281 -GPNEMP-ILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRN-VIGDRGLEVLAQYCKQLKRLRIERGADEQG 357 (592)
T ss_dssp -CTTTGG-GGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEG-GGHHHHHHHHHHHCTTCCEEEEECCCCSST
T ss_pred -chhHHH-HHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccC-ccCHHHHHHHHHhCCCCCEEEeecCccccc
Confidence 222222 123334444444444444332221 1234445555555542 2211 1122223455555555552
Q ss_pred -----CCCCC--chhhhcCCCCCcEEECCCCCCCccChhhhhc-cccCCeeecc----CCcCCCCCh-----hhhcCCCC
Q psy5670 449 -----NKLTE--IPKVLRNLHSLKTLDLGDNLITEINNLSLNS-LHQLAGLRLT----ENNISNISK-----GVFEKLSV 511 (1269)
Q Consensus 449 -----n~l~~--lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~-l~~L~~L~Ls----~n~l~~i~~-----~~f~~l~~ 511 (1269)
+.++. ++.....+++|++|+++.+.+++.....+.. +++|+.|+++ .|.++..+. ..+.++++
T Consensus 358 ~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~ 437 (592)
T 3ogk_B 358 MEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKK 437 (592)
T ss_dssp TSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTT
T ss_pred cccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCC
Confidence 23331 2222344556666666555555544444433 5566666664 344443321 12445666
Q ss_pred CCEEEcCCCc--ccccccccc-CCCCCccEEEcccccccc--cCCcCCCCCCCcEEEccCCcC
Q psy5670 512 LTILNLASNK--IQKVEAGTF-DNNSNLVAIRLDGNYLTD--IGGLFPKLPNLVWLNISENLL 569 (1269)
Q Consensus 512 L~~L~Ls~n~--i~~~~~~~~-~~~~~L~~L~L~~n~l~~--l~~~~~~l~~L~~L~Ls~n~l 569 (1269)
|+.|++++|. +++.....+ ..+++|+.|++++|.+++ ++..+.++++|+.|++++|.+
T Consensus 438 L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l 500 (592)
T 3ogk_B 438 LRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCF 500 (592)
T ss_dssp CCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCC
T ss_pred CCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCC
Confidence 6666665432 333222222 124556666666665543 233344455555555555554
No 74
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.90 E-value=4.4e-23 Score=228.04 Aligned_cols=144 Identities=27% Similarity=0.434 Sum_probs=110.5
Q ss_pred CCCCCCccEEEccCcCccccccccccCCCCCCEEeCCCCCCcccCcccccCCcccCeeecccccCcccChhhhhcCcccc
Q psy5670 823 FIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLK 902 (1269)
Q Consensus 823 f~~~~~L~~L~l~~n~i~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~ 902 (1269)
|.++++|+.|+|++|+|+.+++..|.++++|++|+|++|+|+.+++..|.++++|++|+|++|+|+.+++..|..+++|+
T Consensus 79 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 158 (251)
T 3m19_A 79 FDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQ 158 (251)
T ss_dssp TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred hccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCC
Confidence 34455666677777777777777777777888888888888888877788888888888888888888887788888888
Q ss_pred eEeccCccceeeecc-c-ccCCccEEEeeCCccccc-CCcHHHHHHHHHhccCCcCc---------cCcceeccCCc
Q psy5670 903 VLQLDHNRITSFAVW-H-LSSQIQSITLTSNPWSCD-CDFTEKFRDYLQRSRSSVHD---------ISQIRCMTGSE 967 (1269)
Q Consensus 903 ~L~L~~N~l~~~~~~-~-~~~~l~~l~l~~Np~~C~-C~~~~~~~~w~~~~~~~i~~---------~~~~~C~~p~~ 967 (1269)
+|+|++|+|+.+++. + .+++|+.|++++|||.|+ |+. .|+..|++.....+.+ .....|..+..
T Consensus 159 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~ 234 (251)
T 3m19_A 159 TLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCEI-LYLSQWIRENSNKVKDGTGQNLHESPDGVTCSDGKV 234 (251)
T ss_dssp EEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTSTTH-HHHHHHHHHSGGGBCC-------CCGGGCBBTTSCB
T ss_pred EEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCcccc-HHHHHHHHhcccceeeccCcccccCCCcCccCCCcE
Confidence 888888888888776 5 678899999999999999 885 7999999876544432 33467766543
No 75
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.90 E-value=3e-24 Score=246.26 Aligned_cols=260 Identities=22% Similarity=0.242 Sum_probs=193.6
Q ss_pred cccEEEcCCCCCCccCcccCCCCCCCCEEEccCCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEee
Q psy5670 222 NLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQ 301 (1269)
Q Consensus 222 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~ 301 (1269)
.++.++++.+.+...+...+..+++|++|++++|.++.+.+..|.++++|++|++++|.++.+++ |..+++|++|+++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls 88 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN 88 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence 46666777777666655556667788888888888888777778888888888888888776654 6778888888888
Q ss_pred CCcccccCcccccCCCCCCEEECcCCCCCccccCcccccCCCCccEEEcCCCCCcccCchhhcCCCCCcEEEccCCcccc
Q psy5670 302 NNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIES 381 (1269)
Q Consensus 302 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 381 (1269)
+|.++++++ .++|+.|++++|.+.+ +. ...+++|+.|++++|.++.+.+..+..+++|++|++++|.++.
T Consensus 89 ~n~l~~l~~-----~~~L~~L~l~~n~l~~--~~---~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 158 (317)
T 3o53_A 89 NNYVQELLV-----GPSIETLHAANNNISR--VS---CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT 158 (317)
T ss_dssp SSEEEEEEE-----CTTCCEEECCSSCCSE--EE---ECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCE
T ss_pred CCccccccC-----CCCcCEEECCCCccCC--cC---ccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCc
Confidence 888776542 3788888888888775 22 2335678888888888888777777778888888888888877
Q ss_pred cccccc-cCCCCCcEEEccCCcccccCcccccCCCCCCEEEccCCCCCccChhhhcCCCCCcEEEccCCCCCCchhhhcC
Q psy5670 382 IHRNTF-ASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRN 460 (1269)
Q Consensus 382 i~~~~f-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~ 460 (1269)
+.+..+ ..+++|+.|++++|.++++.. ...+++|++|++++|.+.++.+. +..+++|++|++++|.++.+|..+..
T Consensus 159 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~L~~N~l~~l~~~~~~ 235 (317)
T 3o53_A 159 VNFAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEKALRF 235 (317)
T ss_dssp EEGGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEECTTCCC
T ss_pred ccHHHHhhccCcCCEEECCCCcCccccc--ccccccCCEEECCCCcCCcchhh-hcccCcccEEECcCCcccchhhHhhc
Confidence 665555 367788888888888877633 33477888888888888877665 77778888888888888888877777
Q ss_pred CCCCcEEECCCCCCC-ccChhhhhccccCCeeeccCC
Q psy5670 461 LHSLKTLDLGDNLIT-EINNLSLNSLHQLAGLRLTEN 496 (1269)
Q Consensus 461 l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n 496 (1269)
+++|+.|++++|.+. +..+..+..++.|+.|+++++
T Consensus 236 l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 236 SQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272 (317)
T ss_dssp CTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCCCCEEEccCCCccCcCHHHHHhccccceEEECCCc
Confidence 788888888888877 555556667777777776644
No 76
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.90 E-value=1.3e-23 Score=245.41 Aligned_cols=196 Identities=28% Similarity=0.492 Sum_probs=162.3
Q ss_pred cCCCCCCceecCCCCCcceeeecCCCCccccCCCCCCCCCcEEEecCCCCCCcCCCcCC-CCCCccEEEccCcCcccccc
Q psy5670 766 EMTCPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFI-GRKKLQILFLNSSHVETIHN 844 (1269)
Q Consensus 766 ~~~cp~~C~c~~~~~~~~~~v~c~~~~l~~~~p~~~p~~~~~l~l~~n~i~~l~~~~f~-~~~~L~~L~l~~n~i~~i~~ 844 (1269)
...||..|.|. ...++|++.+++.+ |..+|..++.|+|++|+|+.++...|. ++++|+.|+|++|+|+.+.+
T Consensus 9 ~~~Cp~~C~C~------~~~l~c~~~~l~~i-P~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~ 81 (361)
T 2xot_A 9 VVSCPANCLCA------SNILSCSKQQLPNV-PQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISS 81 (361)
T ss_dssp CTTCCTTCEEE------TTEEECCSSCCSSC-CSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECT
T ss_pred CCCCCCCCEEC------CCEEEeCCCCcCcc-CccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccCh
Confidence 45799999995 35799999999998 999999999999999999999998887 89999999999999999998
Q ss_pred ccccCCCCCCEEeCCCCCCcccCcccccCCcccCeeecccccCcccChhhhhcCcccceEeccCccceeeecc-c----c
Q psy5670 845 KTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVW-H----L 919 (1269)
Q Consensus 845 ~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~-~----~ 919 (1269)
.+|.++++|+.|+|++|+|+.+++..|.++++|++|+|++|+|+.+++..|..+++|+.|+|++|+|+.++.. | .
T Consensus 82 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~ 161 (361)
T 2xot_A 82 EAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNK 161 (361)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----
T ss_pred hhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCccc
Confidence 8899999999999999999888888888888888888888888888888888888888888888887777655 3 1
Q ss_pred cCC--------------------------ccEEEeeCCcccccCCcHHHHHHHHHhccCCcCc-cCcceeccCCcc
Q psy5670 920 SSQ--------------------------IQSITLTSNPWSCDCDFTEKFRDYLQRSRSSVHD-ISQIRCMTGSEV 968 (1269)
Q Consensus 920 ~~~--------------------------l~~l~l~~Np~~C~C~~~~~~~~w~~~~~~~i~~-~~~~~C~~p~~~ 968 (1269)
+++ ++.|+|++|||.|||++.+++..|+......+.+ ...+.|..|...
T Consensus 162 l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~l~~~~~~~~~~~~~~~~~~~~~~~C~~p~~~ 237 (361)
T 2xot_A 162 LPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCKLYQLFSHWQYRQLSSVMDFQEDLYCMHSKKL 237 (361)
T ss_dssp CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCHHHHHHHHHHHHTTCHHHHTTGGGCEEESSSCC
T ss_pred CCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCcCcHHHHHHHHHhcCCchhccCcCCEeCCChHH
Confidence 222 3568999999999999755578898765433333 357899998765
No 77
>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A
Probab=99.90 E-value=1.2e-24 Score=214.27 Aligned_cols=132 Identities=22% Similarity=0.368 Sum_probs=98.1
Q ss_pred CCCCceeEEEEcccCCHHHHHHHHHHhhhcCCCCceEEEecccCCCCCchhHHHHHHHHhcceEEEEecccchhhhhhHH
Q psy5670 1080 DRDKLFDAFVSYSSKDEAFVAEELAPILENGDPAYKLCLHYREFPVGGYIGDTIVQAVESSRRTIMVLSENFIKSEWCRY 1159 (1269)
Q Consensus 1080 ~~~~~yDafvsy~~~d~~~v~~~l~~~Le~~~~~~~l~~~~rd~~~G~~~~~~i~~~i~~Sr~~i~vlS~~~~~s~w~~~ 1159 (1269)
..++.|||||||+++|++||. +|.+.||++++||++|+++||+.||+.+.++|.++|++||++|+|+|++|++|.||.+
T Consensus 6 r~~k~YDvFISy~~~D~~~v~-~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S~wc~~ 84 (146)
T 3ub2_A 6 RWSKDYDVCVCHSEEDLVAAQ-DLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPWCKY 84 (146)
T ss_dssp TTSSSEEEEEECCGGGHHHHH-HHHHHHHC------------------CCCEEECCTTCCEEEEEEEECHHHHHCHHHHH
T ss_pred CCCCcceEEEeCChhhHHHHH-HHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECcccccCHHHHH
Confidence 347899999999999999994 7999999744899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCeEEEEEeCCCCCCCCCHHHHHHHhcCceEEcCCc-chHHHHHHhC
Q psy5670 1160 EFKSAHHQVLRGKKRLIVILLGEVPQKDLDPDIRLYLKSNTYLQWGDK-LFWEKLKFAL 1217 (1269)
Q Consensus 1160 e~~~a~~~~~~~~~~~i~i~~~~~~~~~~~~~l~~~l~~~~~l~w~~~-~Fw~~l~~~l 1217 (1269)
|++.|+++++..+.++|||+ ++++..++|+. |+..+|+++.+. .-+.+++.++
T Consensus 85 El~~al~~~~~~~~~vIpv~-~~v~~~~lp~~----Lr~~~~id~~~~d~~f~~l~~~v 138 (146)
T 3ub2_A 85 QMLQALTEAPGAEGCTIPLL-SGLSRAAYPPE----LRFMYYVDGRGPDGGFRQVKEAV 138 (146)
T ss_dssp HHHHHHHTSSSSSSEEEEEE-CSCCGGGSCGG----GGGSCCEETTSGGGGHHHHHHHH
T ss_pred HHHHHHHHHhhcCCcEEEEE-cCCChhhCCHH----HhCeeeeeccChHhhHHHHHHHH
Confidence 99999998876557888655 67887777775 667789999653 5668887765
No 78
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.89 E-value=4.5e-24 Score=244.82 Aligned_cols=258 Identities=20% Similarity=0.211 Sum_probs=150.2
Q ss_pred CEEEccCCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCCcccccCcccccCCCCCCEEECcCC
Q psy5670 248 QELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNN 327 (1269)
Q Consensus 248 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 327 (1269)
+.++++.+.+.......+..+++|++|++++|+++.+++..|..+++|++|++++|.+++..+ |..+++|++|++++|
T Consensus 13 ~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n 90 (317)
T 3o53_A 13 KIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN 90 (317)
T ss_dssp EEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSS
T ss_pred eEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCC
Confidence 333444444444444444455555555555555555555555555555555555555554433 445555555555555
Q ss_pred CCCccccCcccccCCCCccEEEcCCCCCcccCchhhcCCCCCcEEEccCCcccccccccccCCCCCcEEEccCCcccccC
Q psy5670 328 ELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIE 407 (1269)
Q Consensus 328 ~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~ 407 (1269)
.+ ++++ ..++|++|++++|.++.++.. .+++|+.|++++|+++++.
T Consensus 91 ~l--------------------------~~l~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~ 136 (317)
T 3o53_A 91 YV--------------------------QELL-----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLR 136 (317)
T ss_dssp EE--------------------------EEEE-----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGG
T ss_pred cc--------------------------cccc-----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCcc
Confidence 44 3322 124555555555555554432 2345666666666666655
Q ss_pred cccccCCCCCCEEEccCCCCCccChhhh-cCCCCCcEEEccCCCCCCchhhhcCCCCCcEEECCCCCCCccChhhhhccc
Q psy5670 408 SNSLDSLTALSVLSLDNNELEYIEENAL-KNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLH 486 (1269)
Q Consensus 408 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~ 486 (1269)
+..+..+++|+.|++++|.+.++.+..+ ..+++|++|++++|.++.++.. ..+++|++|++++|.++++++. +..++
T Consensus 137 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~l~~L~~L~Ls~N~l~~l~~~-~~~l~ 214 (317)
T 3o53_A 137 DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ-VVFAKLKTLDLSSNKLAFMGPE-FQSAA 214 (317)
T ss_dssp GBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC-CCCTTCCEEECCSSCCCEECGG-GGGGT
T ss_pred chhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccc-cccccCCEEECCCCcCCcchhh-hcccC
Confidence 5556666666666666666666555444 3566677777777776666432 2366777777777777766554 66677
Q ss_pred cCCeeeccCCcCCCCChhhhcCCCCCCEEEcCCCccc-cccccccCCCCCccEEEcccc
Q psy5670 487 QLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQ-KVEAGTFDNNSNLVAIRLDGN 544 (1269)
Q Consensus 487 ~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~-~~~~~~~~~~~~L~~L~L~~n 544 (1269)
+|+.|++++|.++.++.. +..+++|+.|++++|++. +..+..+..+++|+.|+++++
T Consensus 215 ~L~~L~L~~N~l~~l~~~-~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 215 GVTWISLRNNKLVLIEKA-LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272 (317)
T ss_dssp TCSEEECTTSCCCEECTT-CCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred cccEEECcCCcccchhhH-hhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCc
Confidence 777777777777666643 566777777777777776 444555566666666666633
No 79
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.88 E-value=2.9e-22 Score=214.65 Aligned_cols=180 Identities=28% Similarity=0.526 Sum_probs=167.9
Q ss_pred CCCCceecCCCCCcceeeecCCCCccccCCCCCCCCCcEEEecCCCCCCcCCCcCCCCCCccEEEccCcCcccccccccc
Q psy5670 769 CPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFN 848 (1269)
Q Consensus 769 cp~~C~c~~~~~~~~~~v~c~~~~l~~~~p~~~p~~~~~l~l~~n~i~~l~~~~f~~~~~L~~L~l~~n~i~~i~~~~f~ 848 (1269)
||..|.|. ...++|++.+++.+ |..++..+++|++++|+++.+++..|.++++|++|++++|+++.+++..|.
T Consensus 1 Cp~~C~C~------~~~v~c~~~~l~~~-p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 73 (208)
T 2o6s_A 1 CPSRCSCS------GTTVECYSQGRTSV-PTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFN 73 (208)
T ss_dssp CCTTCEEE------TTEEECCSSCCSSC-CSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTT
T ss_pred CcCCCEEC------CCEEEecCCCccCC-CCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcC
Confidence 89999994 35789999999998 999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCEEeCCCCCCcccCcccccCCcccCeeecccccCcccChhhhhcCcccceEeccCccceeeecc-c-ccCCccEE
Q psy5670 849 GLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVW-H-LSSQIQSI 926 (1269)
Q Consensus 849 ~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~-~-~~~~l~~l 926 (1269)
++++|++|+|++|+++.+++..|.++++|++|+|++|+|+.+++..|..+++|++|+|++|+++.+++. + .+++|+.|
T Consensus 74 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L 153 (208)
T 2o6s_A 74 KLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYI 153 (208)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred CCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999998 6 78999999
Q ss_pred EeeCCcccccCCcHHHHHHHHHhccCCcC
Q psy5670 927 TLTSNPWSCDCDFTEKFRDYLQRSRSSVH 955 (1269)
Q Consensus 927 ~l~~Np~~C~C~~~~~~~~w~~~~~~~i~ 955 (1269)
++++|||.|+|+...++..|...-...++
T Consensus 154 ~l~~N~~~~~~~~l~~L~~~~n~~~g~ip 182 (208)
T 2o6s_A 154 WLHDNPWDCTCPGIRYLSEWINKHSGVVR 182 (208)
T ss_dssp ECCSCCBCCCTTTTHHHHHHHHHCTTTBB
T ss_pred EecCCCeecCCCCHHHHHHHHHhCCceee
Confidence 99999999999977888888876544443
No 80
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.88 E-value=3.2e-22 Score=219.42 Aligned_cols=212 Identities=22% Similarity=0.363 Sum_probs=124.7
Q ss_pred CCCCCCCcccccccCCcccccCCCCCCCCceEEEEeeecccCcccCCccccccccceeEEEEEeCCceeeccCCCchhcc
Q psy5670 30 YQAPDECKWFAVTSEGAEIEVPSAAEPDQEVALVCKLRTINSEIENTNFSIIQAQYTVRLRIECGDMLFFQSSLSPGSFQ 109 (1269)
Q Consensus 30 ~~cp~~C~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~i~~~~~~~~~s~~~~~~~~~L~L~~~~~~~~~~~i~~~~f~ 109 (1269)
+.||..|.|.. .+.+.+.|.. ++.+| . .+..+++|++++|. ...+++.+|+
T Consensus 2 ~~cp~~C~C~~----------------~~~~~v~c~~--l~~ip------~-~~~~l~~L~l~~n~----l~~i~~~~~~ 52 (239)
T 2xwt_C 2 GCSSPPCECHQ----------------EEDFRVTCKD--IQRIP------S-LPPSTQTLKLIETH----LRTIPSHAFS 52 (239)
T ss_dssp -CCSSSCSEEE----------------CSTTEEEECS--CSSCC------C-CCTTCCEEEEESCC----CSEECTTTTT
T ss_pred CCCCCCCeeCC----------------CCcceeEccC--ccccC------C-CCCcccEEEEeCCc----ceEECHHHcc
Confidence 57999999974 1234678854 66666 2 35678888888888 5667777888
Q ss_pred CCcccceeEecccc-CCCCChhhccCCccCceeeccc-ccCCCCccceeccchhhhhcCCCCCEEEccCCCCccCCcccC
Q psy5670 110 TLIDLKDLSVEFCK-IGNLSAGSFRGLRKLKTLTLRT-HNTDWSTMSLDISHNVFTDELQSLESLDLSMNSIWTLPDAIF 187 (1269)
Q Consensus 110 ~l~~L~~L~L~~~~-i~~i~~~~f~~l~~L~~L~L~~-~~~~~~~~~~~i~~~~f~~~l~~L~~L~Ls~n~l~~l~~~~~ 187 (1269)
++++|++|++++|+ ++.+++.+|.++++|++|++++ +.. ..+.+..| .++++|++|++++|.++.+|. |
T Consensus 53 ~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l------~~i~~~~f-~~l~~L~~L~l~~n~l~~lp~--~ 123 (239)
T 2xwt_C 53 NLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNL------TYIDPDAL-KELPLLKFLGIFNTGLKMFPD--L 123 (239)
T ss_dssp TCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTC------CEECTTSE-ECCTTCCEEEEEEECCCSCCC--C
T ss_pred CCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCe------eEcCHHHh-CCCCCCCEEeCCCCCCccccc--c
Confidence 88888888888886 7777777777777777777754 322 13444455 666666666666666666654 4
Q ss_pred CCCCCCc---EEECCCC-CCCCCCccccCCCCcccCCCccc-EEEcCCCCCCccCcccCCCCCCCCEEEccCCC-Ccccc
Q psy5670 188 CPLQSLS---YLNLTQN-KLSNVATFSFSNYDTARCGINLR-VLDLSNNSFDSLPAEGFSRLSRLQELYLQGNI-LTFLA 261 (1269)
Q Consensus 188 ~~l~~L~---~L~Ls~n-~l~~~~~~~~~~~~~~~~l~~L~-~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~ 261 (1269)
..+++|+ +|++++| ++..+++..|.. +++|+ .|++++|.++.++...|.. ++|++|++++|. ++.++
T Consensus 124 ~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~------l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~ 196 (239)
T 2xwt_C 124 TKVYSTDIFFILEITDNPYMTSIPVNAFQG------LCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVID 196 (239)
T ss_dssp TTCCBCCSEEEEEEESCTTCCEECTTTTTT------TBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEEC
T ss_pred ccccccccccEEECCCCcchhhcCcccccc------hhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCC
Confidence 5555555 5555555 444444333322 34444 5555555544444443333 444444444442 44444
Q ss_pred hhhhcCC-CCCcEEEccCCCCCCCCc
Q psy5670 262 DHALDGL-NSLTVLNLSVNNLVNIPP 286 (1269)
Q Consensus 262 ~~~~~~l-~~L~~L~Ls~n~l~~l~~ 286 (1269)
+..|.++ ++|+.|++++|+++.+|+
T Consensus 197 ~~~~~~l~~~L~~L~l~~N~l~~l~~ 222 (239)
T 2xwt_C 197 KDAFGGVYSGPSLLDVSQTSVTALPS 222 (239)
T ss_dssp TTTTTTCSBCCSEEECTTCCCCCCCC
T ss_pred HHHhhccccCCcEEECCCCccccCCh
Confidence 4444444 444444444444444443
No 81
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.87 E-value=3.6e-24 Score=268.98 Aligned_cols=153 Identities=14% Similarity=0.112 Sum_probs=82.9
Q ss_pred CCCCCEEEccCCCCCccChhhhc-CCCCCcEEEcc--C----CCCCCch------hhhcCCCCCcEEECCCCCCCccChh
Q psy5670 414 LTALSVLSLDNNELEYIEENALK-NSTSLQDFHLN--G----NKLTEIP------KVLRNLHSLKTLDLGDNLITEINNL 480 (1269)
Q Consensus 414 l~~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~Ls--~----n~l~~lp------~~l~~l~~L~~L~Ls~n~i~~~~~~ 480 (1269)
+++|+.|.+..+.++......+. .+++|++|+++ + +.++..| ..+..+++|++|++++ .+++....
T Consensus 371 ~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~ 449 (594)
T 2p1m_B 371 CPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFE 449 (594)
T ss_dssp CTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHH
T ss_pred chhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHH
Confidence 55666666655555544333333 35666666666 3 3444322 2245566777777765 45544444
Q ss_pred hhhc-cccCCeeeccCCcCCCCChhhh-cCCCCCCEEEcCCCcccccccc-ccCCCCCccEEEcccccccccC--CcCCC
Q psy5670 481 SLNS-LHQLAGLRLTENNISNISKGVF-EKLSVLTILNLASNKIQKVEAG-TFDNNSNLVAIRLDGNYLTDIG--GLFPK 555 (1269)
Q Consensus 481 ~~~~-l~~L~~L~Ls~n~l~~i~~~~f-~~l~~L~~L~Ls~n~i~~~~~~-~~~~~~~L~~L~L~~n~l~~l~--~~~~~ 555 (1269)
.+.. +++|+.|+|++|.++......+ .++++|++|+|++|.+++.... ....+++|+.|++++|.++.-. .....
T Consensus 450 ~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~ 529 (594)
T 2p1m_B 450 YIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQK 529 (594)
T ss_dssp HHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHH
T ss_pred HHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHh
Confidence 4443 6667777777776643322222 5567777777777776543332 2234667777777777664211 11134
Q ss_pred CCCCcEEEccCC
Q psy5670 556 LPNLVWLNISEN 567 (1269)
Q Consensus 556 l~~L~~L~Ls~n 567 (1269)
+++|+...+..+
T Consensus 530 lp~l~i~~~~~~ 541 (594)
T 2p1m_B 530 MPKLNVEVIDER 541 (594)
T ss_dssp CTTEEEEEECSS
T ss_pred CCCCEEEEecCC
Confidence 566655555544
No 82
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.87 E-value=7.3e-22 Score=208.21 Aligned_cols=169 Identities=34% Similarity=0.582 Sum_probs=119.8
Q ss_pred CCCCCceecCCCCCcceeeecCCCCccccCCCCCCCCCcEEEecCCCCCCcCCCcCCCCCCccEEEccCcCccccccccc
Q psy5670 768 TCPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTF 847 (1269)
Q Consensus 768 ~cp~~C~c~~~~~~~~~~v~c~~~~l~~~~p~~~p~~~~~l~l~~n~i~~l~~~~f~~~~~L~~L~l~~n~i~~i~~~~f 847 (1269)
.||..|.|.. ..++|++.+++++ |..+|..+++|++++|.|+.+++. ..|
T Consensus 1 ~CP~~C~C~~------~~l~~s~~~l~~i-p~~~~~~l~~L~l~~n~i~~~~~~-----------------------~~~ 50 (192)
T 1w8a_A 1 DCPAMCHCEG------TTVDCTGRGLKEI-PRDIPLHTTELLLNDNELGRISSD-----------------------GLF 50 (192)
T ss_dssp CCCTTSEEET------TEEECTTSCCSSC-CSCCCTTCSEEECCSCCCCSBCCS-----------------------CSG
T ss_pred CcCCCCEECC------CEEEcCCCCcCcC-ccCCCCCCCEEECCCCcCCccCCc-----------------------ccc
Confidence 4999999952 4677777777666 665555555555555555444432 235
Q ss_pred cCCCCCCEEeCCCCCCcccCcccccCCcccCeeecccccCcccChhhhhcCcccceEeccCccceeeecc-c-ccCCccE
Q psy5670 848 NGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVW-H-LSSQIQS 925 (1269)
Q Consensus 848 ~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~-~-~~~~l~~ 925 (1269)
..+++|++|+|++|+|+.+.+.+|.++++|++|+|++|+|+.+++..|.++++|++|+|++|+|+++.+. + .+++|+.
T Consensus 51 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 130 (192)
T 1w8a_A 51 GRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTS 130 (192)
T ss_dssp GGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCE
T ss_pred ccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCE
Confidence 6666666666666777666666677777777777777777777776677777777777777777777665 5 6678889
Q ss_pred EEeeCCcccccCCcHHHHHHHHHhccCCcCccCcceeccCCccce
Q psy5670 926 ITLTSNPWSCDCDFTEKFRDYLQRSRSSVHDISQIRCMTGSEVGF 970 (1269)
Q Consensus 926 l~l~~Np~~C~C~~~~~~~~w~~~~~~~i~~~~~~~C~~p~~~~~ 970 (1269)
|++++|||.|+|+. .||..|++..... .....|..|...++
T Consensus 131 L~L~~N~l~c~c~l-~~~~~~l~~~~~~---~~~~~C~~P~~l~~ 171 (192)
T 1w8a_A 131 LNLASNPFNCNCHL-AWFAEWLRKKSLN---GGAARCGAPSKVRD 171 (192)
T ss_dssp EECTTCCBCCSGGG-HHHHHHHHHHCCS---GGGCBBCSSTTTTT
T ss_pred EEeCCCCccCcCcc-hHHHHHHHHcCCC---CCCCCCCCChHHcC
Confidence 99999999999996 7999999876332 24678999998866
No 83
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.87 E-value=7.2e-24 Score=266.26 Aligned_cols=204 Identities=14% Similarity=0.096 Sum_probs=126.6
Q ss_pred CCCCCcEEEccCCcccccc-cccccCCCCCcEEEccCCcccccCc-ccccCCCCCCEEEcc---------CCCCCccChh
Q psy5670 365 DLYRLQVLHLENNQIESIH-RNTFASLSNLHTLIMSNNKLKRIES-NSLDSLTALSVLSLD---------NNELEYIEEN 433 (1269)
Q Consensus 365 ~l~~L~~L~Ls~n~l~~i~-~~~f~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls---------~n~i~~~~~~ 433 (1269)
.+++|++|++++|.++... ...+..+++|+.|++++| +.+... .....+++|++|++. .+.++.....
T Consensus 287 ~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~ 365 (594)
T 2p1m_B 287 VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLV 365 (594)
T ss_dssp HHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHH
T ss_pred hhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHH
Confidence 3445555555555543211 112345555666666555 222111 112235666666662 2344433333
Q ss_pred hh-cCCCCCcEEEccCCCCCCch-hhh-cCCCCCcEEECC--C----CCCCccCh-----hhhhccccCCeeeccCCcCC
Q psy5670 434 AL-KNSTSLQDFHLNGNKLTEIP-KVL-RNLHSLKTLDLG--D----NLITEINN-----LSLNSLHQLAGLRLTENNIS 499 (1269)
Q Consensus 434 ~~-~~l~~L~~L~Ls~n~l~~lp-~~l-~~l~~L~~L~Ls--~----n~i~~~~~-----~~~~~l~~L~~L~Ls~n~l~ 499 (1269)
.+ ..+++|++|.+..+.++... ..+ ..+++|+.|+++ + +.+++.+. ..+..+++|+.|+|++ .++
T Consensus 366 ~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~ 444 (594)
T 2p1m_B 366 SVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLT 444 (594)
T ss_dssp HHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCC
T ss_pred HHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-ccc
Confidence 33 34889999988888887432 233 358899999998 4 55663322 2256788999999977 554
Q ss_pred CCChhhhc-CCCCCCEEEcCCCcccccccccc-CCCCCccEEEcccccccccC--CcCCCCCCCcEEEccCCcCc
Q psy5670 500 NISKGVFE-KLSVLTILNLASNKIQKVEAGTF-DNNSNLVAIRLDGNYLTDIG--GLFPKLPNLVWLNISENLLE 570 (1269)
Q Consensus 500 ~i~~~~f~-~l~~L~~L~Ls~n~i~~~~~~~~-~~~~~L~~L~L~~n~l~~l~--~~~~~l~~L~~L~Ls~n~l~ 570 (1269)
......+. .+++|+.|++++|.+++.....+ .++++|+.|++++|.+++.+ .....+++|+.|++++|.++
T Consensus 445 ~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 445 DKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp HHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred HHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 33322333 38899999999999876655444 56899999999999986432 34456789999999999875
No 84
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.86 E-value=7.1e-23 Score=234.29 Aligned_cols=249 Identities=20% Similarity=0.220 Sum_probs=125.3
Q ss_pred cCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCCccccc-Cccccc-------CCCCCCEEECcCCCCCccccCcc
Q psy5670 266 DGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVL-APGIFN-------VLTQLIVLDLSNNELTEEWVNAA 337 (1269)
Q Consensus 266 ~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~~-~~~~~~-------~l~~L~~L~L~~n~l~~~~~~~~ 337 (1269)
++.++|+.|++++|.+ .+|...... |+.|+|++|.+... .+..+. ++++|++|++++|.+.+. + +.
T Consensus 40 ~~~~~L~~l~l~~n~l-~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~-~~ 113 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE-ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGT-A-PP 113 (312)
T ss_dssp EEEEECTTHHHHCCTT-CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSC-C-CC
T ss_pred ccCCCceeEeeccccc-ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccch-h-HH
Confidence 3445555566666665 555443322 55555555555321 122122 455666666666655542 1 22
Q ss_pred cc--cCCCCccEEEcCCCCCcccCchhhcCC-----CCCcEEEccCCcccccccccccCCCCCcEEEccCCcccccC--c
Q psy5670 338 TF--SGLHRLVVLNIAYNKMNKLDSSIFKDL-----YRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIE--S 408 (1269)
Q Consensus 338 ~~--~~l~~L~~L~Ls~n~l~~~~~~~~~~l-----~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~--~ 408 (1269)
.+ ..+++|+.|++++|.+++. +..+..+ ++|++|++++|.++.+++..|..+++|+.|++++|++.+.. +
T Consensus 114 ~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 192 (312)
T 1wwl_A 114 PLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLI 192 (312)
T ss_dssp CSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHH
T ss_pred HHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHH
Confidence 22 5555566666666655555 3334333 45555555555555555445555555555555555543321 1
Q ss_pred ccccCCCCCCEEEccCCCCCccChhhhcCCCCCcEEEccCCCCCCchh----hhcCCCCCcEEECCCCCCCccCh-hhhh
Q psy5670 409 NSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPK----VLRNLHSLKTLDLGDNLITEINN-LSLN 483 (1269)
Q Consensus 409 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~----~l~~l~~L~~L~Ls~n~i~~~~~-~~~~ 483 (1269)
..+ .+..+++|++|++++|.++.++. .+..+++|++|++++|.+++..+ ..+.
T Consensus 193 ~~~----------------------~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 250 (312)
T 1wwl_A 193 SAL----------------------CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCD 250 (312)
T ss_dssp HHS----------------------CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCC
T ss_pred HHH----------------------HhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhh
Confidence 111 11344445555555554443221 22344555555555555555432 2334
Q ss_pred ccccCCeeeccCCcCCCCChhhhcCCCCCCEEEcCCCccccccccccCCCCCccEEEcccccccc
Q psy5670 484 SLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTD 548 (1269)
Q Consensus 484 ~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~ 548 (1269)
.+++|+.|+|++|.++.+|...+ ++|++|++++|++++++ . +..+++|+.|++++|.+++
T Consensus 251 ~l~~L~~L~Ls~N~l~~ip~~~~---~~L~~L~Ls~N~l~~~p-~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 251 WPSQLNSLNLSFTGLKQVPKGLP---AKLSVLDLSYNRLDRNP-S-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CCTTCCEEECTTSCCSSCCSSCC---SEEEEEECCSSCCCSCC-C-TTTSCEEEEEECTTCTTTC
T ss_pred hcCCCCEEECCCCccChhhhhcc---CCceEEECCCCCCCCCh-h-HhhCCCCCEEeccCCCCCC
Confidence 45566666666666665554332 56666666666666662 2 5566666666666666653
No 85
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.86 E-value=9.2e-23 Score=233.34 Aligned_cols=247 Identities=18% Similarity=0.184 Sum_probs=131.0
Q ss_pred cCCCCccEEEcCCCCCcccCchhhcCCCCCcEEEccCCcccccc-ccccc-------CCCCCcEEEccCCcccccCcccc
Q psy5670 340 SGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIH-RNTFA-------SLSNLHTLIMSNNKLKRIESNSL 411 (1269)
Q Consensus 340 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~-~~~f~-------~l~~L~~L~Ls~n~l~~~~~~~~ 411 (1269)
.+.++|+.|++++|.+ .++..... .|+.|++++|.++... +..+. ++++|++|++++|++++..+..+
T Consensus 40 ~~~~~L~~l~l~~n~l-~~p~~~~~---~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE-ADLGQFTD---IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEEEECTTHHHHCCTT-CCCHHHHH---HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred ccCCCceeEeeccccc-ccHHHHHH---HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 3445566666666666 33332222 1566666666654321 11111 45666666666666665544443
Q ss_pred --cCCCCCCEEEccCCCCCccChhhhcCC-----CCCcEEEccCCCCCCch-hhhcCCCCCcEEECCCCCCCccC--hhh
Q psy5670 412 --DSLTALSVLSLDNNELEYIEENALKNS-----TSLQDFHLNGNKLTEIP-KVLRNLHSLKTLDLGDNLITEIN--NLS 481 (1269)
Q Consensus 412 --~~l~~L~~L~Ls~n~i~~~~~~~~~~l-----~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~Ls~n~i~~~~--~~~ 481 (1269)
..+++|++|++++|.+.++ +..+..+ ++|++|++++|.++.++ ..+..+++|++|++++|.+.+.. +..
T Consensus 116 ~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 194 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISA 194 (312)
T ss_dssp SSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHH
T ss_pred HHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHH
Confidence 5566666666666666655 3444443 56666666666666554 45556666666666666654421 112
Q ss_pred h--hccccCCeeeccCCcCCC---CChhhhcCCCCCCEEEcCCCccccccc-cccCCCCCccEEEcccccccccCCcCCC
Q psy5670 482 L--NSLHQLAGLRLTENNISN---ISKGVFEKLSVLTILNLASNKIQKVEA-GTFDNNSNLVAIRLDGNYLTDIGGLFPK 555 (1269)
Q Consensus 482 ~--~~l~~L~~L~Ls~n~l~~---i~~~~f~~l~~L~~L~Ls~n~i~~~~~-~~~~~~~~L~~L~L~~n~l~~l~~~~~~ 555 (1269)
+ ..+++|++|++++|.++. ++...|.++++|++|++++|++++..+ ..+..+++|+.|++++|.++.+|..+.
T Consensus 195 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~- 273 (312)
T 1wwl_A 195 LCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP- 273 (312)
T ss_dssp SCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC-
T ss_pred HHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc-
Confidence 2 455555555555555542 222344455566666666666555442 333444555555555555554443332
Q ss_pred CCCCcEEEccCCcCccccccccCCCccEEECCCCCcccccccccccccccccEEEcCCCcccc
Q psy5670 556 LPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTE 618 (1269)
Q Consensus 556 l~~L~~L~Ls~n~l~~~~~~~lp~~L~~L~Ls~n~l~~~~~~~~l~~~~~L~~LdLs~N~l~~ 618 (1269)
++|+.|++++|+|++++. +..+++|++|++++|++++
T Consensus 274 -----------------------~~L~~L~Ls~N~l~~~p~---~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 274 -----------------------AKLSVLDLSYNRLDRNPS---PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp -----------------------SEEEEEECCSSCCCSCCC---TTTSCEEEEEECTTCTTTC
T ss_pred -----------------------CCceEEECCCCCCCCChh---HhhCCCCCEEeccCCCCCC
Confidence 344555555555555433 3455677778888877765
No 86
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.86 E-value=3.1e-21 Score=221.90 Aligned_cols=234 Identities=18% Similarity=0.241 Sum_probs=139.1
Q ss_pred CcccEEEcCCCCCCccCcccCCCCCCCCEEEccCCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEe
Q psy5670 221 INLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYL 300 (1269)
Q Consensus 221 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L 300 (1269)
.+++.|+|++|.++.+++. +.++++|++|++++|.++.+ +..+.++++|++|++++|.++.+|.. |..+++|++|++
T Consensus 81 ~~l~~L~L~~n~l~~lp~~-l~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~L 157 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQ-AFRLSHLQHMTIDAAGLMEL-PDTMQQFAGLETLTLARNPLRALPAS-IASLNRLRELSI 157 (328)
T ss_dssp TTCCEEEEESSCCSSCCSC-GGGGTTCSEEEEESSCCCCC-CSCGGGGTTCSEEEEESCCCCCCCGG-GGGCTTCCEEEE
T ss_pred cceeEEEccCCCchhcChh-hhhCCCCCEEECCCCCccch-hHHHhccCCCCEEECCCCccccCcHH-HhcCcCCCEEEC
Confidence 4566666666666655543 55566666666666666633 34566666666666666666655543 456666666666
Q ss_pred eCCcccccCcccccCCCCCCEEECcCCCCCccccCcccccCCCCccEEEcCCCCCcccCchhhcCCCCCcEEEccCCccc
Q psy5670 301 QNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIE 380 (1269)
Q Consensus 301 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 380 (1269)
++|.+.+..|..+.. ..+ ...+.++++|+.|++++|.++.++ ..+..+++|++|++++|.++
T Consensus 158 ~~n~~~~~~p~~~~~------~~~-----------~~~~~~l~~L~~L~L~~n~l~~lp-~~l~~l~~L~~L~L~~N~l~ 219 (328)
T 4fcg_A 158 RACPELTELPEPLAS------TDA-----------SGEHQGLVNLQSLRLEWTGIRSLP-ASIANLQNLKSLKIRNSPLS 219 (328)
T ss_dssp EEETTCCCCCSCSEE------EC------------CCCEEESTTCCEEEEEEECCCCCC-GGGGGCTTCCEEEEESSCCC
T ss_pred CCCCCccccChhHhh------ccc-----------hhhhccCCCCCEEECcCCCcCcch-HhhcCCCCCCEEEccCCCCC
Confidence 665554443333221 000 122344555555555555555443 23555666666666666666
Q ss_pred ccccccccCCCCCcEEEccCCcccccCcccccCCCCCCEEEccCCCCCccChhhhcCCCCCcEEEccCCCC-CCchhhhc
Q psy5670 381 SIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKL-TEIPKVLR 459 (1269)
Q Consensus 381 ~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l-~~lp~~l~ 459 (1269)
.+++ .+..+++|+.|++++|.+.+..+..+..+++|+.|+|++|.+.+..+..+.++++|++|++++|.+ ..+|..+.
T Consensus 220 ~l~~-~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~ 298 (328)
T 4fcg_A 220 ALGP-AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIA 298 (328)
T ss_dssp CCCG-GGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGG
T ss_pred cCch-hhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHh
Confidence 5544 355666666666666666666666666666777777777666666666666777777777777653 36677777
Q ss_pred CCCCCcEEECCCCCCCc
Q psy5670 460 NLHSLKTLDLGDNLITE 476 (1269)
Q Consensus 460 ~l~~L~~L~Ls~n~i~~ 476 (1269)
.+++|+.+++..+.+..
T Consensus 299 ~L~~L~~l~l~~~~~~~ 315 (328)
T 4fcg_A 299 QLPANCIILVPPHLQAQ 315 (328)
T ss_dssp GSCTTCEEECCGGGSCC
T ss_pred hccCceEEeCCHHHHHH
Confidence 77777777776654443
No 87
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.86 E-value=6.3e-22 Score=240.24 Aligned_cols=235 Identities=24% Similarity=0.265 Sum_probs=149.0
Q ss_pred CCCCEEEccCCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCCcccccCcccccCCCCCCEEEC
Q psy5670 245 SRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDL 324 (1269)
Q Consensus 245 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 324 (1269)
++|+.|+|++|.++.+.+..|.++++|++|+|++|.++.+++ |..+++|++|+|++|.++++++ .++|+.|++
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L 106 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHA 106 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEEC
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEEC
Confidence 355555555555555555555556666666666665554443 4556666666666666555432 256666666
Q ss_pred cCCCCCccccCcccccCCCCccEEEcCCCCCcccCchhhcCCCCCcEEEccCCccccccccccc-CCCCCcEEEccCCcc
Q psy5670 325 SNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFA-SLSNLHTLIMSNNKL 403 (1269)
Q Consensus 325 ~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~-~l~~L~~L~Ls~n~l 403 (1269)
++|.+.+ +.. ..+++|+.|++++|.++++.+..+..+++|+.|++++|.++.+.+..+. .+++|+.|+|++|.+
T Consensus 107 ~~N~l~~--~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l 181 (487)
T 3oja_A 107 ANNNISR--VSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181 (487)
T ss_dssp CSSCCCC--EEE---CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred cCCcCCC--CCc---cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcc
Confidence 6666654 211 2345666677777766666666666667777777777777665555553 567777777777777
Q ss_pred cccCcccccCCCCCCEEEccCCCCCccChhhhcCCCCCcEEEccCCCCCCchhhhcCCCCCcEEECCCCCCC-ccChhhh
Q psy5670 404 KRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLIT-EINNLSL 482 (1269)
Q Consensus 404 ~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~-~~~~~~~ 482 (1269)
+++.+ ...+++|+.|+|++|.++++++. +..+++|+.|++++|.++.+|..+..+++|+.|++++|.+. +..+..+
T Consensus 182 ~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~ 258 (487)
T 3oja_A 182 YDVKG--QVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFF 258 (487)
T ss_dssp CEEEC--CCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHHHHH
T ss_pred ccccc--cccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcchHHHH
Confidence 66633 33467777777777777776654 66777777777777777777777777777777777777776 4444455
Q ss_pred hccccCCeeecc
Q psy5670 483 NSLHQLAGLRLT 494 (1269)
Q Consensus 483 ~~l~~L~~L~Ls 494 (1269)
..++.|+.++++
T Consensus 259 ~~l~~L~~l~~~ 270 (487)
T 3oja_A 259 SKNQRVQTVAKQ 270 (487)
T ss_dssp TTCHHHHHHHHH
T ss_pred HhCCCCcEEecc
Confidence 566666666554
No 88
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.86 E-value=6.6e-22 Score=240.12 Aligned_cols=217 Identities=21% Similarity=0.229 Sum_probs=143.9
Q ss_pred CCCCCEEEccCCCCccCCcccCCCCCCCcEEECCCCCCCCCCccccCCCCcccCCCcccEEEcCCCCCCccCcccCCCCC
Q psy5670 166 LQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLS 245 (1269)
Q Consensus 166 l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 245 (1269)
+++|++|+|++|.+..+++..|..+++|++|+|++|.+.+..+ + ..+++|++|+|++|.++.+++. +
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l------~~l~~L~~L~Ls~N~l~~l~~~-----~ 99 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--L------ESLSTLRTLDLNNNYVQELLVG-----P 99 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--C------TTCTTCCEEECCSSEEEEEEEC-----T
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--c------ccCCCCCEEEecCCcCCCCCCC-----C
Confidence 3478888888888888877777888888888888888776543 3 2356788888888877766532 6
Q ss_pred CCCEEEccCCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCCcccccCccccc-CCCCCCEEEC
Q psy5670 246 RLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFN-VLTQLIVLDL 324 (1269)
Q Consensus 246 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L 324 (1269)
+|+.|++++|.++++.+. .+++|+.|++++|.++.+++..|..+++|+.|+|++|.+++..+..+. .+++|+.|+|
T Consensus 100 ~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~L 176 (487)
T 3oja_A 100 SIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176 (487)
T ss_dssp TCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEEC
T ss_pred CcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEec
Confidence 777777777777766543 346677777777777777666666677777777777777766555554 5677777777
Q ss_pred cCCCCCccccCcccccCCCCccEEEcCCCCCcccCchhhcCCCCCcEEEccCCcccccccccccCCCCCcEEEccCCccc
Q psy5670 325 SNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLK 404 (1269)
Q Consensus 325 ~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~ 404 (1269)
++|.+++ + .....+++|+.|++++|.++++++. +..+++|+.|++++|.++.++. .+..+++|+.|++++|.+.
T Consensus 177 s~N~l~~--~--~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~lp~-~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 177 QYNFIYD--V--KGQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEK-ALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp TTSCCCE--E--ECCCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEECT-TCCCCTTCCEEECTTCCBC
T ss_pred CCCcccc--c--cccccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcccch-hhccCCCCCEEEcCCCCCc
Confidence 7777665 1 2233466666666666666665554 5555666666666666655543 2445555555555555554
No 89
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.86 E-value=2e-20 Score=209.17 Aligned_cols=153 Identities=33% Similarity=0.484 Sum_probs=68.3
Q ss_pred CCCEEEccCCCCccCCcccCCCCCCCcEEECCCCCCCCCCccccCCCCcccCCCcccEEEcCCCCCCccCcccCCCCCCC
Q psy5670 168 SLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRL 247 (1269)
Q Consensus 168 ~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 247 (1269)
++++++++++.++.+|... .++|++|+|++|++..++...|.. +++|++|++++|.++.+++..|.++++|
T Consensus 17 ~~~~l~~~~~~l~~ip~~~---~~~l~~L~l~~n~l~~~~~~~~~~------l~~L~~L~l~~n~l~~i~~~~~~~l~~L 87 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNI---PADTKKLDLQSNKLSSLPSKAFHR------LTKLRLLYLNDNKLQTLPAGIFKELKNL 87 (270)
T ss_dssp TTTEEECTTSCCSSCCSCC---CTTCSEEECCSSCCSCCCTTSSSS------CTTCCEEECCSSCCSCCCTTTTSSCTTC
T ss_pred CCCEEEccCCCCCccCCCC---CCCCCEEECcCCCCCeeCHHHhcC------CCCCCEEECCCCccCeeChhhhcCCCCC
Confidence 3455666666555555432 134555555555544444333322 3444444444444444444444444444
Q ss_pred CEEEccCCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCCcccccCcccccCCCCCCEEECcCC
Q psy5670 248 QELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNN 327 (1269)
Q Consensus 248 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 327 (1269)
++|++++|.++.+.+..|.++++|++|++++|+++.+++..|..+++|++|+|++|.++++++..|..+++|+.|++++|
T Consensus 88 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 167 (270)
T 2o6q_A 88 ETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNN 167 (270)
T ss_dssp CEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCC
Confidence 44444444444444444444444444444444444444444444444444444444444433333333344444444433
Q ss_pred CC
Q psy5670 328 EL 329 (1269)
Q Consensus 328 ~l 329 (1269)
.+
T Consensus 168 ~l 169 (270)
T 2o6q_A 168 QL 169 (270)
T ss_dssp CC
T ss_pred cC
Confidence 33
No 90
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.86 E-value=8.9e-21 Score=213.84 Aligned_cols=203 Identities=23% Similarity=0.267 Sum_probs=162.8
Q ss_pred hcCCCCCcEEEccCCcccccccccccCCCCCcEEEccCCcccccCcccccCCCCCCEEEccCCCCCccChhhhcCCCCCc
Q psy5670 363 FKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQ 442 (1269)
Q Consensus 363 ~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 442 (1269)
+.+++++++++++++.++.++.... ++++.|++++|.++++.+..|..+++|+.|+|++|.+..+.+. ..+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~---~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCC---TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCC
T ss_pred ccccCCccEEECCCCCCCcCCCCCC---CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCC
Confidence 4455666666776666666654332 4667777777777776666677777777777777777766543 6778888
Q ss_pred EEEccCCCCCCchhhhcCCCCCcEEECCCCCCCccChhhhhccccCCeeeccCCcCCCCChhhhcCCCCCCEEEcCCCcc
Q psy5670 443 DFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKI 522 (1269)
Q Consensus 443 ~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i 522 (1269)
+|++++|.++.+|..+..+++|++|++++|+++++++..|..+++|+.|+|++|+++.++...|..+++|+.|+|++|++
T Consensus 81 ~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 160 (290)
T 1p9a_G 81 TLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160 (290)
T ss_dssp EEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred EEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcC
Confidence 88888888888888888889999999999999988888888999999999999999888888888999999999999999
Q ss_pred ccccccccCCCCCccEEEcccccccccCCcCCCCCCCcEEEccCCcCc
Q psy5670 523 QKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLE 570 (1269)
Q Consensus 523 ~~~~~~~~~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~l~ 570 (1269)
+.+++..|..+++|+.|+|++|.++.+|..+...++|+.|++++|.+.
T Consensus 161 ~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 161 TELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred CccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCcc
Confidence 998888888899999999999999988877777777777777777654
No 91
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.85 E-value=7.8e-21 Score=213.39 Aligned_cols=224 Identities=25% Similarity=0.340 Sum_probs=119.2
Q ss_pred EEccCCCCCCCCcccccCCCCCcEEEeeCCcccccCcccccCCCCCCEEECcCCCCCccccCcccccCCCCccEEEcCCC
Q psy5670 274 LNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYN 353 (1269)
Q Consensus 274 L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n 353 (1269)
++..+..+..+|... .++|++|++++|.++++++..|.++++|++|++++|.+.. +....|.++++|+.|++++|
T Consensus 12 ~~c~~~~l~~ip~~l---~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~L~~n 86 (276)
T 2z62_A 12 YQCMELNFYKIPDNL---PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT--IEDGAYQSLSHLSTLILTGN 86 (276)
T ss_dssp EECTTSCCSSCCSSS---CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCE--ECTTTTTTCTTCCEEECTTC
T ss_pred EEecCCCccccCCCC---CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCc--cCHHHccCCcCCCEEECCCC
Confidence 444444555555432 2456666666666666555555666666666666665554 33444555555555555555
Q ss_pred CCcccCchhhcCCCCCcEEEccCCcccccccccccCCCCCcEEEccCCcccccC-cccccCCCCCCEEEccCCCCCccCh
Q psy5670 354 KMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIE-SNSLDSLTALSVLSLDNNELEYIEE 432 (1269)
Q Consensus 354 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~i~~~~~ 432 (1269)
.+..+.+..|..+++|++|++++|.+..++...+..+++|+.|++++|.++++. +..+..+++|+.|++++|.+.++.+
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~ 166 (276)
T 2z62_A 87 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 166 (276)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG
T ss_pred ccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCH
Confidence 555555555555555555555555555554444555555555555555554432 3344444444444444444444443
Q ss_pred hhhcCCCCCcEEEccCCCCCCchhhhcCCCCCc-EEECCCCCCCccChhhhhccccCCeeeccCCcCCCCChhhhcCCCC
Q psy5670 433 NALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLK-TLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSV 511 (1269)
Q Consensus 433 ~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~-~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~ 511 (1269)
..+..+++|+ .|. +|++++|.++++.+..+.. .+|+.|++++|.++.++...|..+++
T Consensus 167 ~~~~~l~~L~--------------------~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~ 225 (276)
T 2z62_A 167 TDLRVLHQMP--------------------LLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTS 225 (276)
T ss_dssp GGGHHHHTCT--------------------TCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCS
T ss_pred HHhhhhhhcc--------------------ccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhccccc
Confidence 3333322222 222 5555555555554443332 25666666666666666666666667
Q ss_pred CCEEEcCCCccc
Q psy5670 512 LTILNLASNKIQ 523 (1269)
Q Consensus 512 L~~L~Ls~n~i~ 523 (1269)
|+.|++++|++.
T Consensus 226 L~~L~l~~N~~~ 237 (276)
T 2z62_A 226 LQKIWLHTNPWD 237 (276)
T ss_dssp CCEEECCSSCBC
T ss_pred ccEEEccCCccc
Confidence 777777776654
No 92
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.85 E-value=3e-21 Score=216.04 Aligned_cols=147 Identities=29% Similarity=0.459 Sum_probs=135.6
Q ss_pred CcEEEecCCCCCCcCCCcCCCCCCccEEEccCcCccccccccccCCCCCCEEeCCCCCCcccCcccccCCcccCeeeccc
Q psy5670 805 ATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQY 884 (1269)
Q Consensus 805 ~~~l~l~~n~i~~l~~~~f~~~~~L~~L~l~~n~i~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~ 884 (1269)
+++|++++|.++.+++..|.++++|++|++++|+++.+.+..|.++++|++|+|++|+++.+++..|.++++|++|+|++
T Consensus 87 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 166 (272)
T 3rfs_A 87 LTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSY 166 (272)
T ss_dssp CCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCC
Confidence 46788888888888888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcccChhhhhcCcccceEeccCccceeeecc-c-ccCCccEEEeeCCcccccCCcHHHHHHHHHhcc
Q psy5670 885 NKIIYISNRTFLSLTHLKVLQLDHNRITSFAVW-H-LSSQIQSITLTSNPWSCDCDFTEKFRDYLQRSR 951 (1269)
Q Consensus 885 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~-~-~~~~l~~l~l~~Np~~C~C~~~~~~~~w~~~~~ 951 (1269)
|+|+.+++..|..+++|++|+|++|+++.+++. + .+++|+.|++++|||.|+|+...++..|...-.
T Consensus 167 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~l~~l~~~~n~~~ 235 (272)
T 3rfs_A 167 NQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINKHS 235 (272)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHHHHHHHHTG
T ss_pred CCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCcHHHHHHHHHHhCC
Confidence 999999999999999999999999999999988 6 789999999999999999987788888876543
No 93
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.85 E-value=6.6e-21 Score=219.15 Aligned_cols=231 Identities=16% Similarity=0.151 Sum_probs=108.0
Q ss_pred CCCcEEEeeCCcccccCcccccCCCCCCEEECcCCCCCccccCcccccCCCCccEEEcCCCCCcccCchhhcCCCCCcEE
Q psy5670 293 RDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVL 372 (1269)
Q Consensus 293 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 372 (1269)
+.++.|+|++|.++.+++. +.++++|++|++++|.+.. + +..+.++++|++|++++|.+..++ ..+..+++|++|
T Consensus 81 ~~l~~L~L~~n~l~~lp~~-l~~l~~L~~L~L~~n~l~~--l-p~~~~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L 155 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQ-AFRLSHLQHMTIDAAGLME--L-PDTMQQFAGLETLTLARNPLRALP-ASIASLNRLREL 155 (328)
T ss_dssp TTCCEEEEESSCCSSCCSC-GGGGTTCSEEEEESSCCCC--C-CSCGGGGTTCSEEEEESCCCCCCC-GGGGGCTTCCEE
T ss_pred cceeEEEccCCCchhcChh-hhhCCCCCEEECCCCCccc--h-hHHHhccCCCCEEECCCCccccCc-HHHhcCcCCCEE
Confidence 4555666666655544332 3445555555555555542 2 334444555555555555554332 234444444444
Q ss_pred EccCCcccccccccccCCCCCcEEEccCCcccccCcccccCCCCCCEEEccCCCCCccChhhhcCCCCCcEEEccCCCCC
Q psy5670 373 HLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLT 452 (1269)
Q Consensus 373 ~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~ 452 (1269)
++++|.+....+..+.. ..+ ...+.++++|++|++++|.+..++ ..+.++++|++|++++|.++
T Consensus 156 ~L~~n~~~~~~p~~~~~------~~~---------~~~~~~l~~L~~L~L~~n~l~~lp-~~l~~l~~L~~L~L~~N~l~ 219 (328)
T 4fcg_A 156 SIRACPELTELPEPLAS------TDA---------SGEHQGLVNLQSLRLEWTGIRSLP-ASIANLQNLKSLKIRNSPLS 219 (328)
T ss_dssp EEEEETTCCCCCSCSEE------EC----------CCCEEESTTCCEEEEEEECCCCCC-GGGGGCTTCCEEEEESSCCC
T ss_pred ECCCCCCccccChhHhh------ccc---------hhhhccCCCCCEEECcCCCcCcch-HhhcCCCCCCEEEccCCCCC
Confidence 44443322111111110 000 011333555555555555555332 23555555555555555555
Q ss_pred CchhhhcCCCCCcEEECCCCCCCccChhhhhccccCCeeeccCCcC-CCCChhhhcCCCCCCEEEcCCCccccccccccC
Q psy5670 453 EIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNI-SNISKGVFEKLSVLTILNLASNKIQKVEAGTFD 531 (1269)
Q Consensus 453 ~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l-~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~ 531 (1269)
.+|..+..+++|++|++++|.+.+..+..+..+++|+.|+|++|.+ +.++ ..|.++++|+.|+|++|++.+..+..+.
T Consensus 220 ~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p-~~~~~l~~L~~L~L~~n~~~~~iP~~l~ 298 (328)
T 4fcg_A 220 ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLP-LDIHRLTQLEKLDLRGCVNLSRLPSLIA 298 (328)
T ss_dssp CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCC-TTGGGCTTCCEEECTTCTTCCCCCGGGG
T ss_pred cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcc-hhhhcCCCCCEEeCCCCCchhhccHHHh
Confidence 5555555555555555555555554444445555555555555444 2222 2244455555555555544444444444
Q ss_pred CCCCccEEEccccc
Q psy5670 532 NNSNLVAIRLDGNY 545 (1269)
Q Consensus 532 ~~~~L~~L~L~~n~ 545 (1269)
.+++|+.+++..+.
T Consensus 299 ~L~~L~~l~l~~~~ 312 (328)
T 4fcg_A 299 QLPANCIILVPPHL 312 (328)
T ss_dssp GSCTTCEEECCGGG
T ss_pred hccCceEEeCCHHH
Confidence 44444444444443
No 94
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.84 E-value=6.6e-21 Score=221.63 Aligned_cols=251 Identities=20% Similarity=0.308 Sum_probs=181.8
Q ss_pred CCCCC-CcccccccCCcccccCCCCCCCCceEEEEeeecccCcccCCccccccccceeEEEEEeCCceeeccCCCchhcc
Q psy5670 31 QAPDE-CKWFAVTSEGAEIEVPSAAEPDQEVALVCKLRTINSEIENTNFSIIQAQYTVRLRIECGDMLFFQSSLSPGSFQ 109 (1269)
Q Consensus 31 ~cp~~-C~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~i~~~~~~~~~s~~~~~~~~~L~L~~~~~~~~~~~i~~~~f~ 109 (1269)
.||.. |+|.+. .|.|...+++.+|. .+ |.++++|+|++|. .+.+++++|+
T Consensus 1 gCp~~~C~C~~~-------------------~v~C~~~~Lt~iP~-----~l-~~~l~~L~Ls~N~----i~~i~~~~f~ 51 (350)
T 4ay9_X 1 GCHHRICHCSNR-------------------VFLCQESKVTEIPS-----DL-PRNAIELRFVLTK----LRVIQKGAFS 51 (350)
T ss_dssp -CCCSSSEEETT-------------------EEEEESTTCCSCCT-----TC-CTTCSEEEEESCC----CSEECTTSST
T ss_pred CCCCCccEeeCC-------------------EEEecCCCCCccCc-----Cc-CCCCCEEEccCCc----CCCcCHHHHc
Confidence 38865 999742 68899889999882 22 6789999999999 6788988999
Q ss_pred CCcccceeEeccccC-CCCChhhccCCccCceeecccccCCCCccceeccchhhhhcCCCCCEEEccCCCCccCCcccCC
Q psy5670 110 TLIDLKDLSVEFCKI-GNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHNVFTDELQSLESLDLSMNSIWTLPDAIFC 188 (1269)
Q Consensus 110 ~l~~L~~L~L~~~~i-~~i~~~~f~~l~~L~~L~L~~~~~~~~~~~~~i~~~~f~~~l~~L~~L~Ls~n~l~~l~~~~~~ 188 (1269)
++++|++|+|++|++ +.++.++|.++++|+.+...+++ ....+.++.| .++++|++|++++|.+..+++..+.
T Consensus 52 ~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N-----~l~~l~~~~f-~~l~~L~~L~l~~n~l~~~~~~~~~ 125 (350)
T 4ay9_X 52 GFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN-----NLLYINPEAF-QNLPNLQYLLISNTGIKHLPDVHKI 125 (350)
T ss_dssp TCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET-----TCCEECTTSB-CCCTTCCEEEEEEECCSSCCCCTTC
T ss_pred CCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC-----cccccCchhh-hhccccccccccccccccCCchhhc
Confidence 999999999999998 55777889999888765443221 1235667778 8888888888888888888877777
Q ss_pred CCCCCcEEECCC-CCCCCCCccccCCCCcccCCCcccEEEcCCCCCCccCcccCCCCCCCCEEEcc-CCCCcccchhhhc
Q psy5670 189 PLQSLSYLNLTQ-NKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQ-GNILTFLADHALD 266 (1269)
Q Consensus 189 ~l~~L~~L~Ls~-n~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~ 266 (1269)
...++..|++.+ +++..++...|... ...++.|+|++|+++.+++..|. ..+|++|++. +|.++.+++++|.
T Consensus 126 ~~~~l~~l~l~~~~~i~~l~~~~f~~~-----~~~l~~L~L~~N~i~~i~~~~f~-~~~L~~l~l~~~n~l~~i~~~~f~ 199 (350)
T 4ay9_X 126 HSLQKVLLDIQDNINIHTIERNSFVGL-----SFESVILWLNKNGIQEIHNSAFN-GTQLDELNLSDNNNLEELPNDVFH 199 (350)
T ss_dssp CBSSCEEEEEESCTTCCEECTTSSTTS-----BSSCEEEECCSSCCCEECTTSST-TEEEEEEECTTCTTCCCCCTTTTT
T ss_pred ccchhhhhhhccccccccccccchhhc-----chhhhhhccccccccCCChhhcc-ccchhHHhhccCCcccCCCHHHhc
Confidence 777788888754 56776666665442 24677888888888888776554 4677888876 4667777777788
Q ss_pred CCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCC-cccccCcccccCCCCCCEEECcCC
Q psy5670 267 GLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNN-SINVLAPGIFNVLTQLIVLDLSNN 327 (1269)
Q Consensus 267 ~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n 327 (1269)
++++|++|++++|+++.+|...|. +|+.|.+.++ .+..+++ +.++++|+.++++++
T Consensus 200 ~l~~L~~LdLs~N~l~~lp~~~~~---~L~~L~~l~~~~l~~lP~--l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 200 GASGPVILDISRTRIHSLPSYGLE---NLKKLRARSTYNLKKLPT--LEKLVALMEASLTYP 256 (350)
T ss_dssp TEECCSEEECTTSCCCCCCSSSCT---TCCEEECTTCTTCCCCCC--TTTCCSCCEEECSCH
T ss_pred cCcccchhhcCCCCcCccChhhhc---cchHhhhccCCCcCcCCC--chhCcChhhCcCCCC
Confidence 888888888888888888776544 4445544333 3444443 566777777776543
No 95
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.84 E-value=7.3e-21 Score=208.61 Aligned_cols=196 Identities=23% Similarity=0.346 Sum_probs=151.0
Q ss_pred CCcEEEccCCcccccccccccCCCCCcEEEccCCc-ccccCcccccCCCCCCEEEccC-CCCCccChhhhcCCCCCcEEE
Q psy5670 368 RLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNK-LKRIESNSLDSLTALSVLSLDN-NELEYIEENALKNSTSLQDFH 445 (1269)
Q Consensus 368 ~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~-n~i~~~~~~~~~~l~~L~~L~ 445 (1269)
+|++|++++|.++.+++..|..+++|+.|++++|+ ++.+.+..|.++++|++|++++ |.+..+.+..|.++++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 67777777777777777777777778888887775 7777777777777888888877 777777777777888888888
Q ss_pred ccCCCCCCchhhhcCCCCCc---EEECCCC-CCCccChhhhhccccCC-eeeccCCcCCCCChhhhcCCCCCCEEEcCCC
Q psy5670 446 LNGNKLTEIPKVLRNLHSLK---TLDLGDN-LITEINNLSLNSLHQLA-GLRLTENNISNISKGVFEKLSVLTILNLASN 520 (1269)
Q Consensus 446 Ls~n~l~~lp~~l~~l~~L~---~L~Ls~n-~i~~~~~~~~~~l~~L~-~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n 520 (1269)
+++|.++.+|. +..+++|+ +|++++| .++++++..|..+++|+ .|++++|.+..++...|.. ++|+.|++++|
T Consensus 112 l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n 189 (239)
T 2xwt_C 112 IFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKN 189 (239)
T ss_dssp EEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTC
T ss_pred CCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCC
Confidence 88888887776 66677776 8888888 88887777777888888 8888888888777777766 77888888888
Q ss_pred c-cccccccccCCC-CCccEEEcccccccccCCcCCCCCCCcEEEccCC
Q psy5670 521 K-IQKVEAGTFDNN-SNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISEN 567 (1269)
Q Consensus 521 ~-i~~~~~~~~~~~-~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n 567 (1269)
+ ++++++..|.++ ++|+.|++++|.++.+|.. .+++|+.|+++++
T Consensus 190 ~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 190 KYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNT 236 (239)
T ss_dssp TTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC
T ss_pred CCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCc
Confidence 4 887777777777 7888888888888777643 4566777766654
No 96
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.83 E-value=1.9e-21 Score=227.38 Aligned_cols=252 Identities=19% Similarity=0.268 Sum_probs=133.5
Q ss_pred EEeeCCcccccCcccccCCCCCCEEECcCCCCCccccCc----ccccCCC-CccEEEcCCCCCcccCchhhcCC-----C
Q psy5670 298 VYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNA----ATFSGLH-RLVVLNIAYNKMNKLDSSIFKDL-----Y 367 (1269)
Q Consensus 298 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l-----~ 367 (1269)
+.++.|.+++..+..+...++|++|++++|.++. ... ..+.+++ +|++|++++|.++......+..+ +
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~--~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~ 80 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYS--ISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA 80 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGG--SCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCCh--HHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence 4556666666555555555556666666666654 222 3444555 56666666666555544444332 4
Q ss_pred CCcEEEccCCcccccccccccCCCCCcEEEccCCcccccCcccccCC-CCCCEEEccCCCCCccChhhh----cC-CCCC
Q psy5670 368 RLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSL-TALSVLSLDNNELEYIEENAL----KN-STSL 441 (1269)
Q Consensus 368 ~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~Ls~n~i~~~~~~~~----~~-l~~L 441 (1269)
+|++|++++|.++......+.. .+..+ ++|++|+|++|.+.......+ .. .++|
T Consensus 81 ~L~~L~Ls~n~l~~~~~~~l~~--------------------~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 140 (362)
T 3goz_A 81 NVTSLNLSGNFLSYKSSDELVK--------------------TLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASI 140 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHH--------------------HHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTC
T ss_pred CccEEECcCCcCChHHHHHHHH--------------------HHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCce
Confidence 5555555555554433322111 11222 444445555444444433322 22 2455
Q ss_pred cEEEccCCCCC-----CchhhhcCCC-CCcEEECCCCCCCccChhhhh----cc-ccCCeeeccCCcCCC-----CChhh
Q psy5670 442 QDFHLNGNKLT-----EIPKVLRNLH-SLKTLDLGDNLITEINNLSLN----SL-HQLAGLRLTENNISN-----ISKGV 505 (1269)
Q Consensus 442 ~~L~Ls~n~l~-----~lp~~l~~l~-~L~~L~Ls~n~i~~~~~~~~~----~l-~~L~~L~Ls~n~l~~-----i~~~~ 505 (1269)
++|++++|.++ .++..+..++ +|++|++++|.+++..+..+. .+ ++|+.|+|++|.++. ++...
T Consensus 141 ~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l 220 (362)
T 3goz_A 141 TSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIF 220 (362)
T ss_dssp CEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred eEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHH
Confidence 55555555555 2333444444 666666666666665554333 23 466666666666654 22222
Q ss_pred hcCCCCCCEEEcCCCccccccc----cccCCCCCccEEEcccccccc--------cCCcCCCCCCCcEEEccCCcCcc
Q psy5670 506 FEKLSVLTILNLASNKIQKVEA----GTFDNNSNLVAIRLDGNYLTD--------IGGLFPKLPNLVWLNISENLLEW 571 (1269)
Q Consensus 506 f~~l~~L~~L~Ls~n~i~~~~~----~~~~~~~~L~~L~L~~n~l~~--------l~~~~~~l~~L~~L~Ls~n~l~~ 571 (1269)
....++|++|+|++|++++... ..+..+++|+.|++++|.+.. ++..+..+++|+.|++++|.+..
T Consensus 221 ~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~ 298 (362)
T 3goz_A 221 SSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP 298 (362)
T ss_dssp HHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred hcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence 2224467777777777665443 234556677777777776332 33456667777777777776653
No 97
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.83 E-value=3.4e-20 Score=192.91 Aligned_cols=166 Identities=29% Similarity=0.557 Sum_probs=118.5
Q ss_pred CCCCceecCCCCCcceeeecCCCCccccCCCCCCCCCcEEEecCCCCCCcCCCcCCCCCCccEEEccCcCcccccccccc
Q psy5670 769 CPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFN 848 (1269)
Q Consensus 769 cp~~C~c~~~~~~~~~~v~c~~~~l~~~~p~~~p~~~~~l~l~~n~i~~l~~~~f~~~~~L~~L~l~~n~i~~i~~~~f~ 848 (1269)
||..|+|. ...++|++.+++.+ |..++. +|+.|++++|+++.+++..|.
T Consensus 1 Cp~~C~C~------~~~l~~~~~~l~~~-p~~~~~------------------------~l~~L~l~~n~l~~~~~~~~~ 49 (177)
T 2o6r_A 1 CPSRCSCS------GTEIRCNSKGLTSV-PTGIPS------------------------SATRLELESNKLQSLPHGVFD 49 (177)
T ss_dssp CCTTCEEE------TTEEECCSSCCSSC-CTTCCT------------------------TCSEEECCSSCCCCCCTTTTT
T ss_pred CcCCCEeC------CCEEEecCCCCccC-CCCCCC------------------------CCcEEEeCCCcccEeCHHHhc
Confidence 89999993 24566666666655 544444 455555555555555555666
Q ss_pred CCCCCCEEeCCCCCCcccCcccccCCcccCeeecccccCcccChhhhhcCcccceEeccCccceeeecc-c-ccCCccEE
Q psy5670 849 GLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVW-H-LSSQIQSI 926 (1269)
Q Consensus 849 ~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~-~-~~~~l~~l 926 (1269)
++++|++|+|++|+++.+++..|.++++|++|+|++|+|+.+++..|..+++|++|+|++|+|+.+++. + .+++|+.|
T Consensus 50 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L 129 (177)
T 2o6r_A 50 KLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKI 129 (177)
T ss_dssp TCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred CcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEE
Confidence 666777777777777777776677777777777777777777777777777777777777777777776 5 56788899
Q ss_pred EeeCCcccccCCcHHHHHHHHHhccCCcCccCcceeccCCc
Q psy5670 927 TLTSNPWSCDCDFTEKFRDYLQRSRSSVHDISQIRCMTGSE 967 (1269)
Q Consensus 927 ~l~~Np~~C~C~~~~~~~~w~~~~~~~i~~~~~~~C~~p~~ 967 (1269)
++++|||.|+|+...|+..|+......+ .....|..+..
T Consensus 130 ~l~~N~~~~~~~~l~~l~~~~~~~~~~~--~~~~~C~~~~~ 168 (177)
T 2o6r_A 130 WLHTNPWDCSCPRIDYLSRWLNKNSQKE--QGSAKCSGSGK 168 (177)
T ss_dssp ECCSSCBCCCHHHHHHHHHHHHHTGGGE--ESCCBBTTTCC
T ss_pred EecCCCeeccCccHHHHHHHHhhCcccc--ccCcEeCCCCc
Confidence 9999999999996689999998764333 36789987553
No 98
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.82 E-value=4.3e-20 Score=206.64 Aligned_cols=179 Identities=34% Similarity=0.467 Sum_probs=107.1
Q ss_pred hcCCCCCEEEccCCCCccCCcccCCCCCCCcEEECCCCCCCCCCccccCCCCcccCCCcccEEEcCCCCCCccCcccCCC
Q psy5670 164 DELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSR 243 (1269)
Q Consensus 164 ~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 243 (1269)
..+++|+.|++++|.+..++. +..+++|++|++++|++.+.. . +..+++|++|++++|.++.+++..|.+
T Consensus 38 ~~l~~L~~L~l~~~~i~~~~~--l~~l~~L~~L~l~~n~l~~~~--~------l~~l~~L~~L~L~~n~l~~~~~~~~~~ 107 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKSVQG--IQYLPNVRYLALGGNKLHDIS--A------LKELTNLTYLILTGNQLQSLPNGVFDK 107 (272)
T ss_dssp HHHTTCCEEECTTSCCCCCTT--GGGCTTCCEEECTTSCCCCCG--G------GTTCTTCCEEECTTSCCCCCCTTTTTT
T ss_pred ccccceeeeeeCCCCcccccc--cccCCCCcEEECCCCCCCCch--h------hcCCCCCCEEECCCCccCccChhHhcC
Confidence 566777777777777776654 566777777777777766542 1 223556666666666666666655666
Q ss_pred CCCCCEEEccCCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCCcccccCcccccCCCCCCEEE
Q psy5670 244 LSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLD 323 (1269)
Q Consensus 244 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 323 (1269)
+++|++|++++|.++++.+..|.++++|++|++++|+++.+++..|..+++|++|++++|.++++++..|..+++|+.|+
T Consensus 108 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 187 (272)
T 3rfs_A 108 LTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLR 187 (272)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEE
Confidence 66666666666666666555566666666666666666666655555556666666666655555555555555555555
Q ss_pred CcCCCCCccccCcccccCCCCccEEEcCCCC
Q psy5670 324 LSNNELTEEWVNAATFSGLHRLVVLNIAYNK 354 (1269)
Q Consensus 324 L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~ 354 (1269)
+++|.+.+ +.+..+..+++|+.|++++|.
T Consensus 188 L~~N~l~~--~~~~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 188 LYQNQLKS--VPDGVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp CCSSCCSC--CCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCcCCc--cCHHHHhCCcCCCEEEccCCC
Confidence 55555544 223334444444444444443
No 99
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.82 E-value=1.3e-20 Score=220.42 Aligned_cols=250 Identities=20% Similarity=0.262 Sum_probs=139.1
Q ss_pred EEccCCCCcccchhhhcCCCCCcEEEccCCCCCCCCc----ccccCCC-CCcEEEeeCCcccccCcccccCC-----CCC
Q psy5670 250 LYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPP----ELFNQSR-DLKEVYLQNNSINVLAPGIFNVL-----TQL 319 (1269)
Q Consensus 250 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~----~~f~~l~-~L~~L~L~~n~l~~~~~~~~~~l-----~~L 319 (1269)
+.++.|.+++..+..+...++|++|++++|.++..+. ..|..++ +|++|+|++|.+++..+..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 4556666666555555555556666666666666555 4455555 56666666666555544444332 455
Q ss_pred CEEECcCCCCCccccCcccccCCCCccEEEcCCCCCcccCchh----hcCC-CCCcEEEccCCcccccccccc----cC-
Q psy5670 320 IVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSI----FKDL-YRLQVLHLENNQIESIHRNTF----AS- 389 (1269)
Q Consensus 320 ~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~----~~~l-~~L~~L~Ls~n~l~~i~~~~f----~~- 389 (1269)
++|++++|.++ ...+.. +..+ ++|++|++++|.++......+ ..
T Consensus 83 ~~L~Ls~n~l~--------------------------~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~ 136 (362)
T 3goz_A 83 TSLNLSGNFLS--------------------------YKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNL 136 (362)
T ss_dssp CEEECCSSCGG--------------------------GSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTS
T ss_pred cEEECcCCcCC--------------------------hHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhC
Confidence 55555555544 333322 2222 455555555555544433222 22
Q ss_pred CCCCcEEEccCCcccccCcc----cccCCC-CCCEEEccCCCCCccChhh----hcCC-CCCcEEEccCCCCCC-----c
Q psy5670 390 LSNLHTLIMSNNKLKRIESN----SLDSLT-ALSVLSLDNNELEYIEENA----LKNS-TSLQDFHLNGNKLTE-----I 454 (1269)
Q Consensus 390 l~~L~~L~Ls~n~l~~~~~~----~~~~l~-~L~~L~Ls~n~i~~~~~~~----~~~l-~~L~~L~Ls~n~l~~-----l 454 (1269)
.++|++|++++|.+++.... .+..++ +|++|+|++|.+.+..+.. +..+ ++|++|+|++|.++. +
T Consensus 137 ~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l 216 (362)
T 3goz_A 137 PASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAEL 216 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHH
T ss_pred CCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHH
Confidence 24566666666665543322 223333 6677777777666655433 3334 477777777777765 5
Q ss_pred hhhhcC-CCCCcEEECCCCCCCccChhh----hhccccCCeeeccCCcCCCCChh-------hhcCCCCCCEEEcCCCcc
Q psy5670 455 PKVLRN-LHSLKTLDLGDNLITEINNLS----LNSLHQLAGLRLTENNISNISKG-------VFEKLSVLTILNLASNKI 522 (1269)
Q Consensus 455 p~~l~~-l~~L~~L~Ls~n~i~~~~~~~----~~~l~~L~~L~Ls~n~l~~i~~~-------~f~~l~~L~~L~Ls~n~i 522 (1269)
+..+.. .++|++|++++|.+++..... +..+++|+.|+|++|.+..+... .+..+++|+.|++++|++
T Consensus 217 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l 296 (362)
T 3goz_A 217 AYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEI 296 (362)
T ss_dssp HHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBC
T ss_pred HHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcC
Confidence 555554 347777777777777765533 24456677777777765544432 345566677777777766
Q ss_pred ccc
Q psy5670 523 QKV 525 (1269)
Q Consensus 523 ~~~ 525 (1269)
...
T Consensus 297 ~~~ 299 (362)
T 3goz_A 297 HPS 299 (362)
T ss_dssp CGG
T ss_pred CCc
Confidence 554
No 100
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.81 E-value=1e-19 Score=207.21 Aligned_cols=242 Identities=26% Similarity=0.334 Sum_probs=155.6
Q ss_pred EccCCCCCccChhhhcCCCCCcEEEccCCCCCCchhhhcCCCCCcEEECCCCCCCccChhhhhccccCCeeeccCCcCCC
Q psy5670 421 SLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISN 500 (1269)
Q Consensus 421 ~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~ 500 (1269)
.+..+.+..+. .+..+++|++|++++|.++.+| .+..+++|++|++++|.++++.+ +..+++|+.|++++|.+..
T Consensus 25 ~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~ 99 (308)
T 1h6u_A 25 AAGKSNVTDTV--TQADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN 99 (308)
T ss_dssp HTTCSSTTSEE--CHHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC
T ss_pred HhCCCCcCcee--cHHHcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC
Confidence 34444444432 2345678888888888888887 57778888888888888888766 7788888888888888877
Q ss_pred CChhhhcCCCCCCEEEcCCCccccccccccCCCCCccEEEcccccccccCCcCCCCCCCcEEEccCCcCccccccccCCC
Q psy5670 501 ISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYALIPAD 580 (1269)
Q Consensus 501 i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~lp~~ 580 (1269)
++ .+..+++|+.|++++|+++++.. +..+++|+.|++++|.++.++. +..+++|+.|++++|+++.++.
T Consensus 100 ~~--~~~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~------ 168 (308)
T 1h6u_A 100 VS--AIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP------ 168 (308)
T ss_dssp CG--GGTTCTTCCEEECTTSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG------
T ss_pred ch--hhcCCCCCCEEECCCCCCCCchh--hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh------
Confidence 65 37788888888888888877643 7777888888888888877654 5666677777776666654432
Q ss_pred ccEEECCCCCcccccccccccccccccEEEcCCCccccccCCcccCCccEEEccCcccccccCCccCCCCCccEEEcCCC
Q psy5670 581 LQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGN 660 (1269)
Q Consensus 581 L~~L~Ls~n~l~~~~~~~~l~~~~~L~~LdLs~N~l~~~~~~~~~~~L~~L~Ls~N~i~~~~~~~f~~~~~L~~LdLs~N 660 (1269)
+..+++|+.|++++|+++++++..-.++|+.|+|++|+++++.+ +..+++|+.|++++|
T Consensus 169 -------------------l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N 227 (308)
T 1h6u_A 169 -------------------LANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQ 227 (308)
T ss_dssp -------------------GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEE
T ss_pred -------------------hcCCCCCCEEECCCCccCcChhhcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCC
Confidence 23344555555555555555443333456666666666665553 566667777777777
Q ss_pred CcccccccccccccCC------CCCCCCceEecCCccccccCChh
Q psy5670 661 RLKNINQTALRISPLP------SHKNIPDFYIGENPFQCDCNMQW 699 (1269)
Q Consensus 661 ~l~~l~~~~~~~~~~~------~~~~l~~l~l~~Np~~c~c~~~~ 699 (1269)
+++..+........++ ....+....++.|.+.|.+...|
T Consensus 228 ~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~is~~g~y~~~~~~w 272 (308)
T 1h6u_A 228 TITNQPVFYNNNLVVPNVVKGPSGAPIAPATISDNGTYASPNLTW 272 (308)
T ss_dssp EEECCCEECCSEEEEECCCBCTTSCBCCCSEEGGGCEEETTEEEE
T ss_pred eeecCCeeecccEeccceeECCCCCCCCCCccccCCEEeCCceeE
Confidence 6665443222110000 11123334566666666666555
No 101
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.80 E-value=7.1e-19 Score=200.34 Aligned_cols=193 Identities=26% Similarity=0.421 Sum_probs=92.1
Q ss_pred CCCccEEEcCCCCCcccCchhhcCCCCCcEEEccCCcccccccccccCCCCCcEEEccCCcccccCcccccCCCCCCEEE
Q psy5670 342 LHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLS 421 (1269)
Q Consensus 342 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 421 (1269)
+++|+.|++++|.+..++ .+..+++|++|++++|.++.+++ +..+++|+.|++++|+++++. .+..+++|+.|+
T Consensus 40 l~~L~~L~l~~~~i~~l~--~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~ 113 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTIE--GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVS--AIAGLQSIKTLD 113 (308)
T ss_dssp HHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCG--GGTTCTTCCEEE
T ss_pred cCCcCEEEeeCCCccCch--hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCch--hhcCCCCCCEEE
Confidence 344444445444444432 23444555555555555544443 444555555555555444432 244444555555
Q ss_pred ccCCCCCccChhhhcCCCCCcEEEccCCCCCCchhhhcCCCCCcEEECCCCCCCccChhhhhccccCCeeeccCCcCCCC
Q psy5670 422 LDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNI 501 (1269)
Q Consensus 422 Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~i 501 (1269)
+++|.+.++.+ +..+++|++|++++|.++.++. +..+++|++|++++|.++++.+ +..+++|+.|++++|.+..+
T Consensus 114 l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~ 188 (308)
T 1h6u_A 114 LTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDI 188 (308)
T ss_dssp CTTSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC
T ss_pred CCCCCCCCchh--hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcC
Confidence 55555444332 4445555555555555554443 4444555555555555544433 44444555555555555444
Q ss_pred ChhhhcCCCCCCEEEcCCCccccccccccCCCCCccEEEccccccccc
Q psy5670 502 SKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDI 549 (1269)
Q Consensus 502 ~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~l 549 (1269)
+. +..+++|+.|++++|+++++.+ +..+++|+.|++++|.++..
T Consensus 189 ~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~~ 232 (308)
T 1h6u_A 189 SP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQ 232 (308)
T ss_dssp GG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEECC
T ss_pred hh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeecC
Confidence 33 4445555555555555544432 44444555555555544443
No 102
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.80 E-value=3.5e-19 Score=183.45 Aligned_cols=135 Identities=24% Similarity=0.421 Sum_probs=81.5
Q ss_pred EEEecCCCCCCcCCCcCCCCCCccEEEccCcCccccccccccCCCCCCEEeCCCCCCcccCcccccCCcccCeeeccccc
Q psy5670 807 ELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNK 886 (1269)
Q Consensus 807 ~l~l~~n~i~~l~~~~f~~~~~L~~L~l~~n~i~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~ 886 (1269)
.+++++|.++.++...+ ++|+.|+|++|+|+.+.+..|.++++|++|+|++|+|+.+++..|.++++|++|+|++|+
T Consensus 13 ~l~~s~n~l~~ip~~~~---~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~ 89 (170)
T 3g39_A 13 TVDCSGKSLASVPTGIP---TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89 (170)
T ss_dssp EEECTTSCCSSCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEeCCCCcCccCccCC---CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence 34444444444443221 344445555555555545555555555555555555555555555555555555555555
Q ss_pred CcccChhhhhcCcccceEeccCccceeeecccccCCccEEEeeCCcccccCCcHHHHHHHHHhccCCc-----CccCcce
Q psy5670 887 IIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSSQIQSITLTSNPWSCDCDFTEKFRDYLQRSRSSV-----HDISQIR 961 (1269)
Q Consensus 887 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~l~l~~Np~~C~C~~~~~~~~w~~~~~~~i-----~~~~~~~ 961 (1269)
|+.+++..|.. +++|+.|+|++|||.|+|....|+..|++.....+ .+...++
T Consensus 90 l~~~~~~~~~~----------------------l~~L~~L~L~~N~~~c~c~~l~~l~~~l~~~~~~~~~~~~~~~~~~~ 147 (170)
T 3g39_A 90 LKSIPRGAFDN----------------------LKSLTHIWLLNNPWDCACSDILYLSRWISQHPGLVFGYLNLDPDSAR 147 (170)
T ss_dssp CCCCCTTTTTT----------------------CTTCCEEECCSSCBCTTBGGGHHHHHHHHHCGGGEECSSSBCGGGSB
T ss_pred cCEeCHHHhcC----------------------CCCCCEEEeCCCCCCCCchhHHHHHHHHHhCcceeeccccCCcccce
Confidence 55555555544 45667788899999999975589999999876555 3566789
Q ss_pred eccCC
Q psy5670 962 CMTGS 966 (1269)
Q Consensus 962 C~~p~ 966 (1269)
|..+.
T Consensus 148 C~~~~ 152 (170)
T 3g39_A 148 CSGTN 152 (170)
T ss_dssp BCC-C
T ss_pred eCCCC
Confidence 98764
No 103
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.79 E-value=5e-19 Score=205.76 Aligned_cols=238 Identities=21% Similarity=0.340 Sum_probs=147.6
Q ss_pred cEEEcCCCCCCccCcccCCCCCCCCEEEccCCCCcccchhhhcCCCCCcEEEccCCCCC-CCCcccccCCCCCcE-EEee
Q psy5670 224 RVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLV-NIPPELFNQSRDLKE-VYLQ 301 (1269)
Q Consensus 224 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~f~~l~~L~~-L~L~ 301 (1269)
++++.++++++.+|.. + .+++++|+|++|.++.+++++|.++++|++|+|++|++. .++...|.+++++++ +.+.
T Consensus 12 ~~v~C~~~~Lt~iP~~-l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSD-L--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCCSCCTT-C--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCCccCcC-c--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 4566677777777643 2 256777777777777777777777777777777777764 366666777777665 4455
Q ss_pred CCcccccCcccccCCCCCCEEECcCCCCCccccCcccccCCCCccEEEcCC-CCCcccCchhhcCCC-CCcEEEccCCcc
Q psy5670 302 NNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAY-NKMNKLDSSIFKDLY-RLQVLHLENNQI 379 (1269)
Q Consensus 302 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~-~L~~L~Ls~n~l 379 (1269)
+|+++.+++..|..+++|+.|++++|.+.. +....+....++..+++.+ +.+..++...|..+. .++.|++++|++
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~--~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i 166 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKH--LPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI 166 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSS--CCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred CCcccccCchhhhhcccccccccccccccc--CCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccc
Confidence 677777777777777777777777777665 3344444555666666643 456666665555553 466677777777
Q ss_pred cccccccccCCCCCcEEEccC-CcccccCcccccCCCCCCEEEccCCCCCccChhhhcCCCCCcEEEccCC-CCCCchhh
Q psy5670 380 ESIHRNTFASLSNLHTLIMSN-NKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGN-KLTEIPKV 457 (1269)
Q Consensus 380 ~~i~~~~f~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~lp~~ 457 (1269)
+.++..+|. ..+|+.|++.+ |.++.+.+..|.++++|+.|+|++|+++.+++..|. +|+.|.+.++ .++.+|.
T Consensus 167 ~~i~~~~f~-~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~---~L~~L~~l~~~~l~~lP~- 241 (350)
T 4ay9_X 167 QEIHNSAFN-GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLE---NLKKLRARSTYNLKKLPT- 241 (350)
T ss_dssp CEECTTSST-TEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCT---TCCEEECTTCTTCCCCCC-
T ss_pred cCCChhhcc-ccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhc---cchHhhhccCCCcCcCCC-
Confidence 766665553 34566666653 555555555666666666666666666666554433 3444443332 3455553
Q ss_pred hcCCCCCcEEECCC
Q psy5670 458 LRNLHSLKTLDLGD 471 (1269)
Q Consensus 458 l~~l~~L~~L~Ls~ 471 (1269)
+..+++|+.+++.+
T Consensus 242 l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 242 LEKLVALMEASLTY 255 (350)
T ss_dssp TTTCCSCCEEECSC
T ss_pred chhCcChhhCcCCC
Confidence 45555566665543
No 104
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.78 E-value=1.1e-18 Score=180.31 Aligned_cols=112 Identities=29% Similarity=0.493 Sum_probs=65.3
Q ss_pred CEEeCCCCCCcccCcccccCCcccCeeecccccCcccChhhhhcCcccceEeccCccceeeecc-c-ccCCccEEEeeCC
Q psy5670 854 IILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVW-H-LSSQIQSITLTSN 931 (1269)
Q Consensus 854 ~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~-~-~~~~l~~l~l~~N 931 (1269)
+.|+|++|+|+.+++..|.++++|++|+|++|+|+.+++..|..+++|++|+|++|+|+.+++. | .+++|+.|+|++|
T Consensus 36 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N 115 (174)
T 2r9u_A 36 QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115 (174)
T ss_dssp SEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS
T ss_pred cEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCC
Confidence 3344444444444444444444444444444444444444444444444445555555444444 3 4556778899999
Q ss_pred cccccCCcHHHHHHHHHhccCCcC--------ccCcceeccC
Q psy5670 932 PWSCDCDFTEKFRDYLQRSRSSVH--------DISQIRCMTG 965 (1269)
Q Consensus 932 p~~C~C~~~~~~~~w~~~~~~~i~--------~~~~~~C~~p 965 (1269)
||.|+|....|+..|++.....+. +.+.+.|..+
T Consensus 116 ~~~c~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~ 157 (174)
T 2r9u_A 116 PWDCECRDIMYLRNWVADHTSIVMRWDGKAVNDPDSAKCAGT 157 (174)
T ss_dssp CBCTTBGGGHHHHHHHHHCGGGEEEESSSEEECGGGSBBTTT
T ss_pred CcccccccHHHHHHHHHhcccccccccccccCCcccCEECCC
Confidence 999999755899999987655443 4456677764
No 105
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.77 E-value=6e-18 Score=186.77 Aligned_cols=178 Identities=31% Similarity=0.483 Sum_probs=90.9
Q ss_pred cccEEEcCCCCCCccCcccCCCCCCCCEEEccCCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEee
Q psy5670 222 NLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQ 301 (1269)
Q Consensus 222 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~ 301 (1269)
..++++++++.++.+|.. +. ++|+.|++++|.+..+.+..|.++++|++|++++|.++.+++..|..+++|++|+|+
T Consensus 15 ~~~~l~~~~~~l~~~p~~-~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSG-IP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCSSCCSC-CC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCccccCCC-CC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 345555555555555432 21 345555555555555555555555555555555555555555555555555555555
Q ss_pred CCcccccCcccccCCCCCCEEECcCCCCCccccCcccccCCCCccEEEcCCCCCcccCchhhcCCCCCcEEEccCCcccc
Q psy5670 302 NNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIES 381 (1269)
Q Consensus 302 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 381 (1269)
+|.++++++..|..+++|++|++++|.++. +....|.++++|+.|++++|.++.+++..|..+++|++|++++|.++.
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 169 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKS--LPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS 169 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCC--cChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCc
Confidence 555555554445555555555555555443 333334444555555555555554444444455555555555555554
Q ss_pred cccccccCCCCCcEEEccCCccc
Q psy5670 382 IHRNTFASLSNLHTLIMSNNKLK 404 (1269)
Q Consensus 382 i~~~~f~~l~~L~~L~Ls~n~l~ 404 (1269)
+++..|..+++|+.|++++|.+.
T Consensus 170 ~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 170 VPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp CCTTTTTTCTTCCEEECCSCCBC
T ss_pred cCHHHHhCCCCCCEEEeeCCcee
Confidence 44444444455555555555443
No 106
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.77 E-value=6.2e-19 Score=201.37 Aligned_cols=177 Identities=19% Similarity=0.143 Sum_probs=86.8
Q ss_pred CCcEEEccCCcccccCcccc--cCCCCCCEEEccCCCCCccCh----hhhcCCCCCcEEEccCCCCCCch-hhhcCCCCC
Q psy5670 392 NLHTLIMSNNKLKRIESNSL--DSLTALSVLSLDNNELEYIEE----NALKNSTSLQDFHLNGNKLTEIP-KVLRNLHSL 464 (1269)
Q Consensus 392 ~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~Ls~n~i~~~~~----~~~~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L 464 (1269)
+|++|++++|.+.+..+..+ ..+++|++|+|++|.+.+..+ ..+..+++|++|++++|.+..++ ..+..+++|
T Consensus 92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L 171 (310)
T 4glp_A 92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPAL 171 (310)
T ss_dssp CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTC
T ss_pred ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCC
Confidence 34445554444444444433 444455555555555443211 22334555555555555555443 344555555
Q ss_pred cEEECCCCCCCcc---C-hhhhhccccCCeeeccCCcCCCCChh---hhcCCCCCCEEEcCCCccccccccccCCC---C
Q psy5670 465 KTLDLGDNLITEI---N-NLSLNSLHQLAGLRLTENNISNISKG---VFEKLSVLTILNLASNKIQKVEAGTFDNN---S 534 (1269)
Q Consensus 465 ~~L~Ls~n~i~~~---~-~~~~~~l~~L~~L~Ls~n~l~~i~~~---~f~~l~~L~~L~Ls~n~i~~~~~~~~~~~---~ 534 (1269)
++|++++|++.+. . ...+..+++|++|+|++|.++.++.. .+..+++|++|+|++|++++..+..+..+ +
T Consensus 172 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~ 251 (310)
T 4glp_A 172 TSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSS 251 (310)
T ss_dssp CEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCT
T ss_pred CEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcC
Confidence 5555555554431 1 11123455566666666655444332 24455666666666666665544444333 4
Q ss_pred CccEEEcccccccccCCcCCCCCCCcEEEccCCcCc
Q psy5670 535 NLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLE 570 (1269)
Q Consensus 535 ~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~l~ 570 (1269)
+|+.|++++|+++.+|..+. ++|+.|++++|+++
T Consensus 252 ~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~ 285 (310)
T 4glp_A 252 ALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLN 285 (310)
T ss_dssp TCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCC
T ss_pred cCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCC
Confidence 55566666665555554332 34444444444444
No 107
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.77 E-value=7.6e-19 Score=200.60 Aligned_cols=199 Identities=20% Similarity=0.168 Sum_probs=114.0
Q ss_pred CCcEEEccCCcccccccccc--cCCCCCcEEEccCCcccccCc----ccccCCCCCCEEEccCCCCCccChhhhcCCCCC
Q psy5670 368 RLQVLHLENNQIESIHRNTF--ASLSNLHTLIMSNNKLKRIES----NSLDSLTALSVLSLDNNELEYIEENALKNSTSL 441 (1269)
Q Consensus 368 ~L~~L~Ls~n~l~~i~~~~f--~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L 441 (1269)
+|++|++++|.+....+..+ ..+++|++|++++|.+++..+ ..+..+++|++|+|++|.+.++.+..|+.+++|
T Consensus 92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L 171 (310)
T 4glp_A 92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPAL 171 (310)
T ss_dssp CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTC
T ss_pred ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCC
Confidence 35555555555444333333 445555555555555544221 223345566666666666665555556666666
Q ss_pred cEEEccCCCCCC---chh--hhcCCCCCcEEECCCCCCCccChh---hhhccccCCeeeccCCcCCCCChhhhcCC---C
Q psy5670 442 QDFHLNGNKLTE---IPK--VLRNLHSLKTLDLGDNLITEINNL---SLNSLHQLAGLRLTENNISNISKGVFEKL---S 510 (1269)
Q Consensus 442 ~~L~Ls~n~l~~---lp~--~l~~l~~L~~L~Ls~n~i~~~~~~---~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l---~ 510 (1269)
++|++++|++.. ++. .+..+++|++|++++|.++.+... .+..+++|++|+|++|.++.+.+..+..+ +
T Consensus 172 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~ 251 (310)
T 4glp_A 172 TSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSS 251 (310)
T ss_dssp CEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCT
T ss_pred CEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcC
Confidence 666666665542 221 224566666666666666544332 23556677777777777755522223333 5
Q ss_pred CCCEEEcCCCccccccccccCCCCCccEEEcccccccccCCcCCCCCCCcEEEccCCcCc
Q psy5670 511 VLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLE 570 (1269)
Q Consensus 511 ~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~l~ 570 (1269)
+|++|+|++|+++.++... .++|+.|+|++|+++++|. +..+++|+.|++++|.++
T Consensus 252 ~L~~L~Ls~N~l~~lp~~~---~~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 252 ALNSLNLSFAGLEQVPKGL---PAKLRVLDLSSNRLNRAPQ-PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp TCCCEECCSSCCCSCCSCC---CSCCSCEECCSCCCCSCCC-TTSCCCCSCEECSSTTTS
T ss_pred cCCEEECCCCCCCchhhhh---cCCCCEEECCCCcCCCCch-hhhCCCccEEECcCCCCC
Confidence 7777777777777654332 2677777888877777654 566677777777777665
No 108
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.77 E-value=4.1e-18 Score=183.67 Aligned_cols=199 Identities=23% Similarity=0.397 Sum_probs=116.3
Q ss_pred CeeeccCCcCCCCChhhhcCCCCCCEEEcCCCccccccccccCCCCCccEEEccccccccc-CCcCCCCCCCcEEEccCC
Q psy5670 489 AGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDI-GGLFPKLPNLVWLNISEN 567 (1269)
Q Consensus 489 ~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~l-~~~~~~l~~L~~L~Ls~n 567 (1269)
+.++++++.++.+|... .++|+.|++++|+|+++.+..|..+++|+.|+|++|.++.+ +..|.++++|+.|++++|
T Consensus 14 ~~v~c~~~~l~~iP~~l---~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNL---PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCSSCCSSC---CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcCcCCCcc---CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 34455555555555422 14555555555555555555555555666666666655554 345555555555555555
Q ss_pred cCccccccccCCCccEEECCCCCcccccccccccccccccEEEcCCCccccccCCcccCCccEEEccCcccccccCCccC
Q psy5670 568 LLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFF 647 (1269)
Q Consensus 568 ~l~~~~~~~lp~~L~~L~Ls~n~l~~~~~~~~l~~~~~L~~LdLs~N~l~~~~~~~~~~~L~~L~Ls~N~i~~~~~~~f~ 647 (1269)
+++.++... +..++ +|+.|+|++|+|+++.+..|.
T Consensus 91 ~l~~l~~~~-----------------------f~~l~----------------------~L~~L~L~~N~l~~~~~~~~~ 125 (220)
T 2v9t_B 91 KITELPKSL-----------------------FEGLF----------------------SLQLLLLNANKINCLRVDAFQ 125 (220)
T ss_dssp CCCCCCTTT-----------------------TTTCT----------------------TCCEEECCSSCCCCCCTTTTT
T ss_pred cCCccCHhH-----------------------ccCCC----------------------CCCEEECCCCCCCEeCHHHcC
Confidence 444221100 01112 344444455555555556677
Q ss_pred CCCCccEEEcCCCCcccccccccccccCCCCCCCCceEecCCccccccCChhHHhhccccccCCCcccccCccccccccc
Q psy5670 648 MKPNLTRVDLVGNRLKNINQTALRISPLPSHKNIPDFYIGENPFQCDCNMQWLQSYSVNKERNKPNLVDLDTVTCKLLYN 727 (1269)
Q Consensus 648 ~~~~L~~LdLs~N~l~~l~~~~~~~~~~~~~~~l~~l~l~~Np~~c~c~~~~l~~~~~~~~~~~~~~~~l~~~~c~~~~~ 727 (1269)
.+++|+.|+|++|+|++++...+ ....+++.+++++|||.|+|.+.|+..+-.. .+ .......|..+.
T Consensus 126 ~l~~L~~L~L~~N~l~~~~~~~~-----~~l~~L~~L~L~~N~~~c~c~l~~l~~~l~~----~~--~~~~~~~C~~P~- 193 (220)
T 2v9t_B 126 DLHNLNLLSLYDNKLQTIAKGTF-----SPLRAIQTMHLAQNPFICDCHLKWLADYLHT----NP--IETSGARCTSPR- 193 (220)
T ss_dssp TCTTCCEEECCSSCCSCCCTTTT-----TTCTTCCEEECCSSCEECSGGGHHHHHHHHH----CC--CBCSCCBEEESG-
T ss_pred CCCCCCEEECCCCcCCEECHHHH-----hCCCCCCEEEeCCCCcCCCCccHHHHHHHHh----CC--CCccCCCcCCch-
Confidence 77788888888888887776554 3456778888999999999999999875321 01 123456787554
Q ss_pred cCCCcccccccCCCccccccc
Q psy5670 728 RANPAILLKEAHSNQFLCEYE 748 (1269)
Q Consensus 728 ~~~~~~~l~~~~~~~~~~~~~ 748 (1269)
...+..+.+++..+|.|...
T Consensus 194 -~l~g~~l~~l~~~~~~c~~~ 213 (220)
T 2v9t_B 194 -RLANKRIGQIKSKKFRCSAA 213 (220)
T ss_dssp -GGTTCBGGGSCGGGCCC---
T ss_pred -HHcCCchhhCCHHHCcCccc
Confidence 35567788888888877654
No 109
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.76 E-value=2.1e-17 Score=195.44 Aligned_cols=316 Identities=17% Similarity=0.212 Sum_probs=188.2
Q ss_pred ccCCCchhccCCcccceeEeccccCCCCChhhccCCccCceeecccccCCCCccceeccchhhhhcCCCCCEEEccCCCC
Q psy5670 100 QSSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHNVFTDELQSLESLDLSMNSI 179 (1269)
Q Consensus 100 ~~~i~~~~f~~l~~L~~L~L~~~~i~~i~~~~f~~l~~L~~L~L~~~~~~~~~~~~~i~~~~f~~~l~~L~~L~Ls~n~l 179 (1269)
...|+..+|.++.+|+.+.|.. .++.|+..+|.+|.+|+.+++.. ....+...+| .++++|+.+.++.+ +
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~-------~l~~I~~~aF-~~c~~L~~i~~p~~-l 128 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPD-------SVKMIGRCTF-SGCYALKSILLPLM-L 128 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCT-------TCCEECTTTT-TTCTTCCCCCCCTT-C
T ss_pred EeEhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCC-------CceEccchhh-cccccchhhcccCc-e
Confidence 4567888888888888888874 47888888888888888888842 2345666777 88888888777643 6
Q ss_pred ccCCcccCCCCCCCcEEECCCCCCCCCCccccCCCCcccCCCcccEEEcCCCCCCccCcccCCCCCCCCEEEccCCCCcc
Q psy5670 180 WTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTF 259 (1269)
Q Consensus 180 ~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 259 (1269)
..+...+|..+..+....... +..+...+|.+ +.+|+.+.+.++ +..+...+|.++.+|+.+.+..+ ++.
T Consensus 129 ~~i~~~aF~~~~~~~~~~~~~--~~~i~~~aF~~------c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~ 198 (394)
T 4fs7_A 129 KSIGVEAFKGCDFKEITIPEG--VTVIGDEAFAT------CESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKI 198 (394)
T ss_dssp CEECTTTTTTCCCSEEECCTT--CCEECTTTTTT------CTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCE
T ss_pred eeecceeeecccccccccCcc--ccccchhhhcc------cCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceE
Confidence 677777777765444333222 22333334433 566777777543 45566666777777777766554 555
Q ss_pred cchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCCcccccCcccccCCCCCCEEECcCCCCCccccCcccc
Q psy5670 260 LADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATF 339 (1269)
Q Consensus 260 ~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 339 (1269)
+...+|.++..|+.+.+..+. ..+.... ....+|+.+.+.. .++.+....|.++..|+.+.+..+... +....|
T Consensus 199 I~~~~F~~~~~L~~i~~~~~~-~~i~~~~-~~~~~l~~i~ip~-~~~~i~~~~f~~~~~l~~~~~~~~~~~---i~~~~F 272 (394)
T 4fs7_A 199 IRDYCFAECILLENMEFPNSL-YYLGDFA-LSKTGVKNIIIPD-SFTELGKSVFYGCTDLESISIQNNKLR---IGGSLF 272 (394)
T ss_dssp ECTTTTTTCTTCCBCCCCTTC-CEECTTT-TTTCCCCEEEECT-TCCEECSSTTTTCSSCCEEEECCTTCE---ECSCTT
T ss_pred eCchhhccccccceeecCCCc-eEeehhh-cccCCCceEEECC-CceecccccccccccceeEEcCCCcce---eecccc
Confidence 556666666666666665442 2222222 2345666666643 344455555666666666666554322 345556
Q ss_pred cCCCCccEEEcCCCCCcccCchhhcCCCCCcEEEccCCcccccccccccCCCCCcEEEccCCcccccCcccccCCCCCCE
Q psy5670 340 SGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSV 419 (1269)
Q Consensus 340 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 419 (1269)
..+..++.+.+.... ++...|..+.+|+.+.+..+ ++.+...+|.++.+|+.++|.. .++.++..+|.+|++|+.
T Consensus 273 ~~~~~l~~~~~~~~~---i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~ 347 (394)
T 4fs7_A 273 YNCSGLKKVIYGSVI---VPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPY-LVEEIGKRSFRGCTSLSN 347 (394)
T ss_dssp TTCTTCCEEEECSSE---ECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCTTCCE
T ss_pred ccccccceeccCcee---eccccccccccccccccccc-cceechhhhcCCCCCCEEEeCC-cccEEhHHhccCCCCCCE
Confidence 666666666554432 33344555666666666433 5555555666666666666643 255555555666666666
Q ss_pred EEccCCCCCccChhhhcCCCCCcEEEcc
Q psy5670 420 LSLDNNELEYIEENALKNSTSLQDFHLN 447 (1269)
Q Consensus 420 L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls 447 (1269)
+.+..+ +..+...+|.+|++|+.+++.
T Consensus 348 i~lp~~-l~~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 348 INFPLS-LRKIGANAFQGCINLKKVELP 374 (394)
T ss_dssp ECCCTT-CCEECTTTBTTCTTCCEEEEE
T ss_pred EEECcc-ccEehHHHhhCCCCCCEEEEC
Confidence 655543 555555555555555555554
No 110
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.76 E-value=1.9e-19 Score=212.66 Aligned_cols=236 Identities=21% Similarity=0.242 Sum_probs=115.2
Q ss_pred CCCCCCCCEEEccCCCCcccchh----hhcCCCCCcEEEccCCCCCCC----Cccc------ccCCCCCcEEEeeCCccc
Q psy5670 241 FSRLSRLQELYLQGNILTFLADH----ALDGLNSLTVLNLSVNNLVNI----PPEL------FNQSRDLKEVYLQNNSIN 306 (1269)
Q Consensus 241 ~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~Ls~n~l~~l----~~~~------f~~l~~L~~L~L~~n~l~ 306 (1269)
+..+++|++|+|++|.+....+. .+..+++|++|+|++|.+..+ |..+ |..+++|++|+|++|.++
T Consensus 28 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 107 (386)
T 2ca6_A 28 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG 107 (386)
T ss_dssp HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCC
Confidence 44555566666666655544332 244566666666666544322 1111 244555666666655555
Q ss_pred c----cCcccccCCCCCCEEECcCCCCCccccCccc----ccCC---------CCccEEEcCCCCCcccC-c---hhhcC
Q psy5670 307 V----LAPGIFNVLTQLIVLDLSNNELTEEWVNAAT----FSGL---------HRLVVLNIAYNKMNKLD-S---SIFKD 365 (1269)
Q Consensus 307 ~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~----~~~l---------~~L~~L~Ls~n~l~~~~-~---~~~~~ 365 (1269)
. ..+..+..+++|++|+|++|.++.. .... +..+ ++|+.|++++|.++... + ..+..
T Consensus 108 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~--~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~ 185 (386)
T 2ca6_A 108 PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQ--AGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS 185 (386)
T ss_dssp TTTHHHHHHHHHHCTTCCEEECCSSCCHHH--HHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCEEECcCCCCCHH--HHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHh
Confidence 4 2233445556666666666655421 1111 1122 45555555555554211 1 23444
Q ss_pred CCCCcEEEccCCcccc-----cccccccCCCCCcEEEccCCccc----ccCcccccCCCCCCEEEccCCCCCcc----Ch
Q psy5670 366 LYRLQVLHLENNQIES-----IHRNTFASLSNLHTLIMSNNKLK----RIESNSLDSLTALSVLSLDNNELEYI----EE 432 (1269)
Q Consensus 366 l~~L~~L~Ls~n~l~~-----i~~~~f~~l~~L~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~Ls~n~i~~~----~~ 432 (1269)
+++|++|++++|.++. +.+..+..+++|+.|+|++|.++ ...+..+..+++|+.|+|++|.+... .+
T Consensus 186 ~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~ 265 (386)
T 2ca6_A 186 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVV 265 (386)
T ss_dssp CTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHH
T ss_pred CCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHH
Confidence 5556666666655542 12223445555555555555554 22233444555555555555555443 12
Q ss_pred hhhc--CCCCCcEEEccCCCCCC-----chhhh-cCCCCCcEEECCCCCCCccC
Q psy5670 433 NALK--NSTSLQDFHLNGNKLTE-----IPKVL-RNLHSLKTLDLGDNLITEIN 478 (1269)
Q Consensus 433 ~~~~--~l~~L~~L~Ls~n~l~~-----lp~~l-~~l~~L~~L~Ls~n~i~~~~ 478 (1269)
..+. .+++|++|+|++|.++. +|..+ .++++|++|++++|.+++..
T Consensus 266 ~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 266 DAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred HHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 2332 25555555555555554 44444 33455555555555555444
No 111
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.75 E-value=4.5e-18 Score=207.62 Aligned_cols=214 Identities=21% Similarity=0.298 Sum_probs=117.8
Q ss_pred CCcEEEccCCCCCCchhhhcCCCCCcEEECCCCCCCccChhhhhccccCCeeeccCCcCCCCChhhhcCCCCCCEEEcCC
Q psy5670 440 SLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLAS 519 (1269)
Q Consensus 440 ~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~ 519 (1269)
+|+.|++++|.++.+|..+ +++|++|++++|.++.++ ..+++|+.|+|++|.++.++. |.+ +|+.|+|++
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N~l~~ip~--l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL--PPQITVLEITQNALISLP----ELPASLEYLDACDNRLSTLPE--LPA--SLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC--CCT--TCCEEECCS
T ss_pred CccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCcccc----cccCCCCEEEccCCCCCCcch--hhc--CCCEEECCC
Confidence 6666666666666666543 255666666666665443 234555555555555554544 222 555555555
Q ss_pred CccccccccccCCCCCccEEEcccccccccCCcCCCCCCCcEEEccCCcCccccccccCCCccEEECCCCCccccccccc
Q psy5670 520 NKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFE 599 (1269)
Q Consensus 520 n~i~~~~~~~~~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~lp~~L~~L~Ls~n~l~~~~~~~~ 599 (1269)
|++++++. .+++|+.|++++|.++.+|. .+++|+.|++++|+|+.++. +
T Consensus 130 N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~-------------------------~l~~L~~L~Ls~N~L~~lp~-l- 178 (571)
T 3cvr_A 130 NQLTMLPE----LPALLEYINADNNQLTMLPE-------------------------LPTSLEVLSVRNNQLTFLPE-L- 178 (571)
T ss_dssp SCCSCCCC----CCTTCCEEECCSSCCSCCCC-------------------------CCTTCCEEECCSSCCSCCCC-C-
T ss_pred CcCCCCCC----cCccccEEeCCCCccCcCCC-------------------------cCCCcCEEECCCCCCCCcch-h-
Confidence 55555333 34445555555555544443 33455555555555555544 1
Q ss_pred ccccccccEEEcCCCccccccCCcccCCc-------cEEEccCcccccccCCccCCCCCccEEEcCCCCccccccccccc
Q psy5670 600 IESQLRLTYFDASSNKLTELTGNAIPHSV-------ENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRI 672 (1269)
Q Consensus 600 l~~~~~L~~LdLs~N~l~~~~~~~~~~~L-------~~L~Ls~N~i~~~~~~~f~~~~~L~~LdLs~N~l~~l~~~~~~~ 672 (1269)
. ++|+.|+|++|+|+.++. ++.+| +.|+|++|+|+.+. ..+..+++|+.|+|++|+|++..+..+..
T Consensus 179 -~--~~L~~L~Ls~N~L~~lp~--~~~~L~~~~~~L~~L~Ls~N~l~~lp-~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 179 -P--ESLEALDVSTNLLESLPA--VPVRNHHSEETEIFFRCRENRITHIP-ENILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp -C--TTCCEEECCSSCCSSCCC--CC--------CCEEEECCSSCCCCCC-GGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred -h--CCCCEEECcCCCCCchhh--HHHhhhcccccceEEecCCCcceecC-HHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 1 566777777777776555 44466 88888888888754 45555888888888888888766554431
Q ss_pred c-cCCCCCCCCce--Eec-------CCccccccCChhHHh
Q psy5670 673 S-PLPSHKNIPDF--YIG-------ENPFQCDCNMQWLQS 702 (1269)
Q Consensus 673 ~-~~~~~~~l~~l--~l~-------~Np~~c~c~~~~l~~ 702 (1269)
. ..+... -+.+ +++ .|| .|+|...|+..
T Consensus 253 l~~~~~~~-~~~~~~~l~~~~~~~~~~p-~~~~~~~Wl~~ 290 (571)
T 3cvr_A 253 QTAQPDYH-GPRIYFSMSDGQQNTLHRP-LADAVTAWFPE 290 (571)
T ss_dssp HHHSCC----CEEECCC----------C-CSHHHHTTCC-
T ss_pred hhcCcccc-CCeeEEeeccccccccccc-chhhHHHHhhh
Confidence 1 111100 0111 122 255 79999999864
No 112
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.75 E-value=4.7e-19 Score=209.25 Aligned_cols=185 Identities=21% Similarity=0.263 Sum_probs=82.8
Q ss_pred cCCCCccEEEcCCCCCccc----CchhhcCCCCCcEEEccCCccccccccccc----CC---------CCCcEEEccCCc
Q psy5670 340 SGLHRLVVLNIAYNKMNKL----DSSIFKDLYRLQVLHLENNQIESIHRNTFA----SL---------SNLHTLIMSNNK 402 (1269)
Q Consensus 340 ~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~----~l---------~~L~~L~Ls~n~ 402 (1269)
..+++|+.|+|++|.+... .+..+..+++|++|++++|.++......+. .+ ++|++|++++|+
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~ 170 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence 3444444555544444431 222344445555555555554432222221 11 455555555555
Q ss_pred ccccC-c---ccccCCCCCCEEEccCCCCCc-----cChhhhcCCCCCcEEEccCCCC-----CCchhhhcCCCCCcEEE
Q psy5670 403 LKRIE-S---NSLDSLTALSVLSLDNNELEY-----IEENALKNSTSLQDFHLNGNKL-----TEIPKVLRNLHSLKTLD 468 (1269)
Q Consensus 403 l~~~~-~---~~~~~l~~L~~L~Ls~n~i~~-----~~~~~~~~l~~L~~L~Ls~n~l-----~~lp~~l~~l~~L~~L~ 468 (1269)
++... + ..+..+++|+.|++++|.+.. +.+..+..+++|+.|+|++|.+ ..+|..+..+++|++|+
T Consensus 171 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~ 250 (386)
T 2ca6_A 171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG 250 (386)
T ss_dssp CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEE
T ss_pred CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEE
Confidence 44211 1 133344555555555555442 1222444555555555555555 23444555555555555
Q ss_pred CCCCCCCccCh----hhhhc--cccCCeeeccCCcCCC-----CChhhhcCCCCCCEEEcCCCcccc
Q psy5670 469 LGDNLITEINN----LSLNS--LHQLAGLRLTENNISN-----ISKGVFEKLSVLTILNLASNKIQK 524 (1269)
Q Consensus 469 Ls~n~i~~~~~----~~~~~--l~~L~~L~Ls~n~l~~-----i~~~~f~~l~~L~~L~Ls~n~i~~ 524 (1269)
|++|.+++... ..+.. +++|+.|+|++|.++. ++...+.++++|+.|++++|++++
T Consensus 251 L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~ 317 (386)
T 2ca6_A 251 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 317 (386)
T ss_dssp CTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred CCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCc
Confidence 55555554321 22211 4445555555554433 333333444555555555554443
No 113
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.75 E-value=1.7e-18 Score=200.41 Aligned_cols=218 Identities=16% Similarity=0.184 Sum_probs=139.5
Q ss_pred ccEEEcCCCCCcccCchhhcCC--CCCcEEEccCCcccccccccccCCCCCcEEEccCCccccc-CcccccCCCCCCEEE
Q psy5670 345 LVVLNIAYNKMNKLDSSIFKDL--YRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRI-ESNSLDSLTALSVLS 421 (1269)
Q Consensus 345 L~~L~Ls~n~l~~~~~~~~~~l--~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~ 421 (1269)
++.++++++.+. +..+..+ +.++.|++++|.+....+. +..+++|+.|++++|.+++. .+..+..+++|++|+
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 555666655544 2334444 5666677776666655544 33567777777777776654 444566777777777
Q ss_pred ccCCCCCccChhhhcCCCCCcEEEccCC-CCC--CchhhhcCCCCCcEEECCCC-CCCcc-Chhhhhccc-cCCeeeccC
Q psy5670 422 LDNNELEYIEENALKNSTSLQDFHLNGN-KLT--EIPKVLRNLHSLKTLDLGDN-LITEI-NNLSLNSLH-QLAGLRLTE 495 (1269)
Q Consensus 422 Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~--~lp~~l~~l~~L~~L~Ls~n-~i~~~-~~~~~~~l~-~L~~L~Ls~ 495 (1269)
+++|.+.+..+..+..+++|++|++++| .++ .++..+..+++|++|++++| .+++. .+..+..++ +|++|++++
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~ 204 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG 204 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCS
T ss_pred CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCC
Confidence 7777776666666777777777777777 566 35666677777777777777 77654 244566777 777777777
Q ss_pred Cc--CC--CCChhhhcCCCCCCEEEcCCCc-cccccccccCCCCCccEEEccccc-ccccC-CcCCCCCCCcEEEccCC
Q psy5670 496 NN--IS--NISKGVFEKLSVLTILNLASNK-IQKVEAGTFDNNSNLVAIRLDGNY-LTDIG-GLFPKLPNLVWLNISEN 567 (1269)
Q Consensus 496 n~--l~--~i~~~~f~~l~~L~~L~Ls~n~-i~~~~~~~~~~~~~L~~L~L~~n~-l~~l~-~~~~~l~~L~~L~Ls~n 567 (1269)
|. ++ .++ ..+..+++|+.|++++|. +++.....+..+++|+.|++++|. +.... ..+..+++|+.|++++|
T Consensus 205 ~~~~~~~~~l~-~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 205 YRKNLQKSDLS-TLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CGGGSCHHHHH-HHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CcccCCHHHHH-HHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 73 32 222 345667778888888777 665555566777777777777774 22111 23455666666666666
No 114
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.74 E-value=6.8e-17 Score=189.82 Aligned_cols=265 Identities=14% Similarity=0.288 Sum_probs=163.6
Q ss_pred ccCCcccceeEeccccCCCCChhhccCCccCceeecccccCCCCccceeccchhhhhcCCCCCEEEccCCCCccCCcccC
Q psy5670 108 FQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHNVFTDELQSLESLDLSMNSIWTLPDAIF 187 (1269)
Q Consensus 108 f~~l~~L~~L~L~~~~i~~i~~~~f~~l~~L~~L~L~~~~~~~~~~~~~i~~~~f~~~l~~L~~L~Ls~n~l~~l~~~~~ 187 (1269)
+..+..++.+.+.. .++.|+.++|.++ +|+.+.+.. ....+...+| .++ +|+.+.+.. .+..++..+|
T Consensus 109 ~~~~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~-------~i~~I~~~aF-~~~-~L~~i~lp~-~l~~I~~~aF 176 (401)
T 4fdw_A 109 TEILKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNE-------GLKSIGDMAF-FNS-TVQEIVFPS-TLEQLKEDIF 176 (401)
T ss_dssp EEECSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCT-------TCCEECTTTT-TTC-CCCEEECCT-TCCEECSSTT
T ss_pred EEecCCccEEEECC-ccCEehHhhcccC-CccEEEeCC-------CccEECHHhc-CCC-CceEEEeCC-CccEehHHHh
Confidence 34456777777764 5777878888875 688887742 2345667777 664 688888875 6777887788
Q ss_pred CCCCCCcEEECCCCCCCCCCccccCCCCcccCCCcccEEEcCCCCCCccCcccCCCCCCCCEEEccCCCCcccchhhhcC
Q psy5670 188 CPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDG 267 (1269)
Q Consensus 188 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 267 (1269)
.+|++|+.++|+.|+++.++...|. +.+|+.+.+.. .++.+...+|.++++|+.+.+..+ ++.+...+|.+
T Consensus 177 ~~c~~L~~l~l~~n~l~~I~~~aF~-------~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~ 247 (401)
T 4fdw_A 177 YYCYNLKKADLSKTKITKLPASTFV-------YAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE 247 (401)
T ss_dssp TTCTTCCEEECTTSCCSEECTTTTT-------TCCCSEEECCT-TCCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT
T ss_pred hCcccCCeeecCCCcceEechhhEe-------ecccCEEEeCC-chheehhhHhhCCCCCCEEecCCC-ccCcccccccc
Confidence 8888888888887777777776664 25677777764 377777777777777777777653 56666666766
Q ss_pred CCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCCccc-----ccCcccccCCCCCCEEECcCCCCCccccCcccccCC
Q psy5670 268 LNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSIN-----VLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGL 342 (1269)
Q Consensus 268 l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~-----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l 342 (1269)
.+|+.+.+. +.++.++..+|.+|++|+.+.+.++.+. .+...+|.++++|+.+++.+ .+.. +...+|.+|
T Consensus 248 -~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~--I~~~aF~~c 322 (401)
T 4fdw_A 248 -SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRI--LGQGLLGGN 322 (401)
T ss_dssp -CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCE--ECTTTTTTC
T ss_pred -CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEE--EhhhhhcCC
Confidence 567777773 3466666667777777777777665543 34455555555555555552 2333 344455555
Q ss_pred CCccEEEcCCCCCcccCchhhcCCCCCcEEEccCCcccccccccccCCC-CCcEEEccC
Q psy5670 343 HRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLS-NLHTLIMSN 400 (1269)
Q Consensus 343 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~-~L~~L~Ls~ 400 (1269)
.+|+.+.|..+ ++.+...+|.++ +|+.+++.+|.+..+....|.+++ +++.|.+..
T Consensus 323 ~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 323 RKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPA 379 (401)
T ss_dssp CSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECG
T ss_pred CCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCH
Confidence 55555555332 444444444444 455555554444444444444442 344444433
No 115
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.74 E-value=1.3e-18 Score=201.41 Aligned_cols=80 Identities=21% Similarity=0.201 Sum_probs=35.3
Q ss_pred CCEEEccCCCCcccchhhhcCC--CCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCCccccc-CcccccCCCCCCEEE
Q psy5670 247 LQELYLQGNILTFLADHALDGL--NSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVL-APGIFNVLTQLIVLD 323 (1269)
Q Consensus 247 L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~ 323 (1269)
++.++++++.+. +..+..+ ++++.|++++|.+...++.. ..+++|++|++++|.+++. .+..+..+++|++|+
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~~-~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEH-FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCSC-CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchhh-ccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 445555555443 2233333 45555555555544443332 2344444444444444332 223334444444444
Q ss_pred CcCCCCC
Q psy5670 324 LSNNELT 330 (1269)
Q Consensus 324 L~~n~l~ 330 (1269)
+++|.+.
T Consensus 125 L~~~~l~ 131 (336)
T 2ast_B 125 LEGLRLS 131 (336)
T ss_dssp CTTCBCC
T ss_pred CcCcccC
Confidence 4444433
No 116
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.74 E-value=3.8e-17 Score=193.22 Aligned_cols=336 Identities=18% Similarity=0.273 Sum_probs=191.5
Q ss_pred CCccCCcccCCCCCCCcEEECCCCCCCCCCccccCCCCcccCCCcccEEEcCCCCCCccCcccCCCCCCCCEEEccCCCC
Q psy5670 178 SIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNIL 257 (1269)
Q Consensus 178 ~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 257 (1269)
.+++|+..+|.+|++|+.+.+.. .++.+...+|.+ |.+|+.+++..+ ++.+...+|.++.+|+.+.+.. .+
T Consensus 58 ~VtsIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~------c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~-~l 128 (394)
T 4fs7_A 58 DVVSIGYAAFQGCRKVTEIKIPS-TVREIGEFAFEN------CSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPL-ML 128 (394)
T ss_dssp EEEEECTTTTTTCTTEEEEECCT-TCCEECTTTTTT------CTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCT-TC
T ss_pred eEeEhHHHHhhCCCCceEEEeCC-CccCcchhHhhC------CCCCcEEEeCCC-ceEccchhhcccccchhhcccC-ce
Confidence 36678888888888888888864 366666666654 567777777643 6666667777777777666553 35
Q ss_pred cccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCCcccccCcccccCCCCCCEEECcCCCCCccccCcc
Q psy5670 258 TFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAA 337 (1269)
Q Consensus 258 ~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 337 (1269)
..+...+|.++..++..... .+..+...+|.++++|+.+.+.++ +..+....|.++.+|+.+++..+ +.. +...
T Consensus 129 ~~i~~~aF~~~~~~~~~~~~--~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~--I~~~ 202 (394)
T 4fs7_A 129 KSIGVEAFKGCDFKEITIPE--GVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKI--IRDY 202 (394)
T ss_dssp CEECTTTTTTCCCSEEECCT--TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCE--ECTT
T ss_pred eeecceeeecccccccccCc--cccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceE--eCch
Confidence 55555566665433332221 233444555666666666666432 34455555555556665555543 222 3344
Q ss_pred cccCCCCccEEEcCCCCCcccCchhhcCCCCCcEEEccCCcccccccccccCCCCCcEEEccCCcccccCcccccCCCCC
Q psy5670 338 TFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTAL 417 (1269)
Q Consensus 338 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 417 (1269)
+|.++..|+.+.+..+.. .+... +... .+|+.+.+.. .++.+....|.++..|
T Consensus 203 ~F~~~~~L~~i~~~~~~~-~i~~~-~~~~------------------------~~l~~i~ip~-~~~~i~~~~f~~~~~l 255 (394)
T 4fs7_A 203 CFAECILLENMEFPNSLY-YLGDF-ALSK------------------------TGVKNIIIPD-SFTELGKSVFYGCTDL 255 (394)
T ss_dssp TTTTCTTCCBCCCCTTCC-EECTT-TTTT------------------------CCCCEEEECT-TCCEECSSTTTTCSSC
T ss_pred hhccccccceeecCCCce-Eeehh-hccc------------------------CCCceEEECC-Cceecccccccccccc
Confidence 555555555554443321 11111 1122 3444444432 2233334444455555
Q ss_pred CEEEccCCCCCccChhhhcCCCCCcEEEccCCCCCCchhhhcCCCCCcEEECCCCCCCccChhhhhccccCCeeeccCCc
Q psy5670 418 SVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENN 497 (1269)
Q Consensus 418 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~ 497 (1269)
+.+.+..+ ...+...+|..+..++.+......+.. ..+..+.+|+.+.+.++ ++.+...+|.++.+|+.++|.. .
T Consensus 256 ~~~~~~~~-~~~i~~~~F~~~~~l~~~~~~~~~i~~--~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~-~ 330 (394)
T 4fs7_A 256 ESISIQNN-KLRIGGSLFYNCSGLKKVIYGSVIVPE--KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPY-L 330 (394)
T ss_dssp CEEEECCT-TCEECSCTTTTCTTCCEEEECSSEECT--TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCT-T
T ss_pred eeEEcCCC-cceeeccccccccccceeccCceeecc--ccccccccccccccccc-cceechhhhcCCCCCCEEEeCC-c
Confidence 55555433 233444455555555555554432211 23455666666666543 5666666777777777777754 3
Q ss_pred CCCCChhhhcCCCCCCEEEcCCCccccccccccCCCCCccEEEcccccccccCCcCCCCCCCcEE
Q psy5670 498 ISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWL 562 (1269)
Q Consensus 498 l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L 562 (1269)
+..|+..+|.+|.+|+.+++..+ ++.+...+|.+|.+|+.+++..+ ++.+...|.++++|+.+
T Consensus 331 v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 331 VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LEQYRYDFEDTTKFKWI 393 (394)
T ss_dssp CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GGGGGGGBCTTCEEEEE
T ss_pred ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CEEhhheecCCCCCcEE
Confidence 66777777777777877777665 77777777777778887777643 44445567777766654
No 117
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.73 E-value=8.4e-17 Score=189.04 Aligned_cols=263 Identities=14% Similarity=0.237 Sum_probs=153.9
Q ss_pred hcCCCCCEEEccCCCCccCCcccCCCCCCCcEEECCCCCCCCCCccccCCCCcccCCCcccEEEcCCCCCCccCcccCCC
Q psy5670 164 DELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSR 243 (1269)
Q Consensus 164 ~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 243 (1269)
..+..++.+.+.. .++.|+..+|.++ +|+.+.+..+ ++.+...+|.+ .+|+.+.+.. .++.+...+|.+
T Consensus 110 ~~~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-------~~L~~i~lp~-~l~~I~~~aF~~ 178 (401)
T 4fdw_A 110 EILKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-------STVQEIVFPS-TLEQLKEDIFYY 178 (401)
T ss_dssp EECSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-------CCCCEEECCT-TCCEECSSTTTT
T ss_pred EecCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-------CCceEEEeCC-CccEehHHHhhC
Confidence 4456777777764 4777777777765 6777777655 66666666653 2577777764 566666667777
Q ss_pred CCCCCEEEccCCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCCcccccCcccccCCCCCCEEE
Q psy5670 244 LSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLD 323 (1269)
Q Consensus 244 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 323 (1269)
|++|+.+++.+|.++.+...+|. +.+|+.+.+..+ ++.++..+|.++++|+.+.+..+ ++.+...+|.+ .+|+.+.
T Consensus 179 c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~ 254 (401)
T 4fdw_A 179 CYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVK 254 (401)
T ss_dssp CTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEE
T ss_pred cccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEE
Confidence 77777777777777776666665 467777777643 66666666777777777766653 55566666665 5666666
Q ss_pred CcCCCCCccccCcccccCCCCccEEEcCCCCCc-----ccCchhhcCCCCCcEEEccCCcccccccccccCCCCCcEEEc
Q psy5670 324 LSNNELTEEWVNAATFSGLHRLVVLNIAYNKMN-----KLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIM 398 (1269)
Q Consensus 324 L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~-----~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~L 398 (1269)
+.+ .+.. +...+|.+|++|+.+.+.++.+. .+....|.++++|+.+.+. +.++.+...+|.++.+|+.+.|
T Consensus 255 lp~-~i~~--I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~l 330 (401)
T 4fdw_A 255 LPN-GVTN--IASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTI 330 (401)
T ss_dssp EET-TCCE--ECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEE
T ss_pred eCC-CccE--EChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEE
Confidence 633 3333 44556666666666666555443 3444555555555555555 2355555555555555555555
Q ss_pred cCCcccccCcccccCCCCCCEEEccCCCCCccChhhhcCCC-CCcEEEcc
Q psy5670 399 SNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNST-SLQDFHLN 447 (1269)
Q Consensus 399 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~Ls 447 (1269)
..+ ++.+...+|.++ +|+.+.+.+|.+..+....|.+++ +++.|.+.
T Consensus 331 p~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp 378 (401)
T 4fdw_A 331 PAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVP 378 (401)
T ss_dssp CTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEEC
T ss_pred Ccc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeC
Confidence 322 444444445544 455555555444444444444432 34444443
No 118
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.72 E-value=6e-18 Score=194.84 Aligned_cols=102 Identities=24% Similarity=0.367 Sum_probs=81.2
Q ss_pred CCCCCcEEECCCCCCCccChhhhhccccCCeeeccCCcCCCCChhhhcCCCCCC-EEEcCCCccccccccccCCCCCccE
Q psy5670 460 NLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLT-ILNLASNKIQKVEAGTFDNNSNLVA 538 (1269)
Q Consensus 460 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~-~L~Ls~n~i~~~~~~~~~~~~~L~~ 538 (1269)
.+++|++|++++|.++.++..+|.++.+|++|+|.+| +..|+..+|.++++|+ .+++.+ .++.+...+|.+|++|+.
T Consensus 224 ~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~ 301 (329)
T 3sb4_A 224 YMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRY 301 (329)
T ss_dssp HCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEE
T ss_pred hcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCE
Confidence 3677888888877788887778888888888888776 7778888888888888 888877 777788888888888888
Q ss_pred EEcccccccccC-CcCCCCCCCcEEE
Q psy5670 539 IRLDGNYLTDIG-GLFPKLPNLVWLN 563 (1269)
Q Consensus 539 L~L~~n~l~~l~-~~~~~l~~L~~L~ 563 (1269)
|++++|.++.++ ..|.++++|+.+.
T Consensus 302 l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 302 VLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred EEeCCCccCccchhhhcCCcchhhhc
Confidence 888888888776 5788888888775
No 119
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.71 E-value=1.1e-17 Score=192.77 Aligned_cols=285 Identities=18% Similarity=0.196 Sum_probs=190.4
Q ss_pred CCCCCEEEccCCCCcccchhhhcC-CCCCcEEEccCCCCC--CCCcccccCCCCCcEEEeeCCcccccCcccccC-----
Q psy5670 244 LSRLQELYLQGNILTFLADHALDG-LNSLTVLNLSVNNLV--NIPPELFNQSRDLKEVYLQNNSINVLAPGIFNV----- 315 (1269)
Q Consensus 244 l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~Ls~n~l~--~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~----- 315 (1269)
+.+|++|.++++ +.......+.. +++|+.|||++|++. ......+ +.++.+.+..+ .++...|.+
T Consensus 24 ~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~---~~~~~~~~~~~---~I~~~aF~~~~~~~ 96 (329)
T 3sb4_A 24 ANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTY---PNGKFYIYMAN---FVPAYAFSNVVNGV 96 (329)
T ss_dssp HHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSS---GGGCCEEECTT---EECTTTTEEEETTE
T ss_pred hCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCccccc---ccccccccccc---ccCHHHhccccccc
Confidence 467888888864 22222223444 788888998888877 3333222 22344444444 455666777
Q ss_pred ---CCCCCEEECcCCCCCccccCcccccCCCCccEEEcCCCCCcccCchhhcCCCCCcEEEccCC----ccccccccccc
Q psy5670 316 ---LTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENN----QIESIHRNTFA 388 (1269)
Q Consensus 316 ---l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n----~l~~i~~~~f~ 388 (1269)
+++|+.|+|.+ .+.. +...+|.+|++|+.++++.|.+..+.+..|.++.++..+.+..+ ....+...+|.
T Consensus 97 ~~g~~~L~~l~L~~-~i~~--I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~ 173 (329)
T 3sb4_A 97 TKGKQTLEKVILSE-KIKN--IEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFI 173 (329)
T ss_dssp EEECTTCCC-CBCT-TCCE--ECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEE
T ss_pred ccccCCCcEEECCc-cccc--hhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccc
Confidence 88888888877 6665 66777888888888888888887887777877777776666553 23345555666
Q ss_pred CCCCCc-EEEccCCc-ccccCcccccCCCCCCEEEccCCCCCccChhhh-cCCCCCcEEEccCCCCCCchh-hhcCCCCC
Q psy5670 389 SLSNLH-TLIMSNNK-LKRIESNSLDSLTALSVLSLDNNELEYIEENAL-KNSTSLQDFHLNGNKLTEIPK-VLRNLHSL 464 (1269)
Q Consensus 389 ~l~~L~-~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L 464 (1269)
++..|+ .+.+.... +.......-....++..+.+.++ +.......+ ..+++|+.++|++|.++.+|. .|.++++|
T Consensus 174 ~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~-l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L 252 (329)
T 3sb4_A 174 EGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGK-LDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYL 252 (329)
T ss_dssp ESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEEC-CCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTC
T ss_pred cccccceeEEecCCCcHHHHHhhcccCccccceEEEeee-ecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCC
Confidence 666666 45444321 11111111112445666666654 222222222 237888888888888888875 57888888
Q ss_pred cEEECCCCCCCccChhhhhccccCC-eeeccCCcCCCCChhhhcCCCCCCEEEcCCCccccccccccCCCCCccEEEc
Q psy5670 465 KTLDLGDNLITEINNLSLNSLHQLA-GLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRL 541 (1269)
Q Consensus 465 ~~L~Ls~n~i~~~~~~~~~~l~~L~-~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~L 541 (1269)
++|++.+| ++.+...+|.++.+|+ .+++.+ .+..|+..+|.+|++|+.|++++|+++.+...+|.++++|+.|+.
T Consensus 253 ~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 253 LKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp CEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred CEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 88888887 8888888888888888 888887 778888888888888888888888888888888888888888763
No 120
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.70 E-value=2.6e-17 Score=192.05 Aligned_cols=190 Identities=24% Similarity=0.324 Sum_probs=109.6
Q ss_pred ccCCCCCCCcccccccCCcccccCCCCCCCCceEEEEeeecccCcccCCccccccccceeEEEEEeCCceeeccCCCchh
Q psy5670 28 LRYQAPDECKWFAVTSEGAEIEVPSAAEPDQEVALVCKLRTINSEIENTNFSIIQAQYTVRLRIECGDMLFFQSSLSPGS 107 (1269)
Q Consensus 28 ~~~~cp~~C~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~i~~~~~~~~~s~~~~~~~~~L~L~~~~~~~~~~~i~~~~ 107 (1269)
+...||..|.|... .+.|....+..+|. ..+..++.|+|++|. .+.+++..
T Consensus 8 ~~~~Cp~~C~C~~~-------------------~l~c~~~~l~~iP~------~~~~~l~~L~Ls~N~----l~~l~~~~ 58 (361)
T 2xot_A 8 SVVSCPANCLCASN-------------------ILSCSKQQLPNVPQ------SLPSYTALLDLSHNN----LSRLRAEW 58 (361)
T ss_dssp CCTTCCTTCEEETT-------------------EEECCSSCCSSCCS------SCCTTCSEEECCSSC----CCEECTTS
T ss_pred cCCCCCCCCEECCC-------------------EEEeCCCCcCccCc------cCCCCCCEEECCCCC----CCccChhh
Confidence 34779999999732 57888888877762 224557777777777 45566666
Q ss_pred cc-CCcccceeEeccccCCCCChhhccCCccCceeecccccCCCCccceeccchhhhhcCCCCCEEEccCCCCccCCccc
Q psy5670 108 FQ-TLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHNVFTDELQSLESLDLSMNSIWTLPDAI 186 (1269)
Q Consensus 108 f~-~l~~L~~L~L~~~~i~~i~~~~f~~l~~L~~L~L~~~~~~~~~~~~~i~~~~f~~~l~~L~~L~Ls~n~l~~l~~~~ 186 (1269)
|. ++++|++|+|++|+|+.+++++|.++++|++|+|++|++ ..+.+..| .++++|++|+|++|.+..+++..
T Consensus 59 ~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l------~~~~~~~~-~~l~~L~~L~L~~N~i~~~~~~~ 131 (361)
T 2xot_A 59 TPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHL------HTLDEFLF-SDLQALEVLLLYNNHIVVVDRNA 131 (361)
T ss_dssp SSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC------CEECTTTT-TTCTTCCEEECCSSCCCEECTTT
T ss_pred hhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcC------CcCCHHHh-CCCcCCCEEECCCCcccEECHHH
Confidence 66 777777777777777777666666666666666654432 13334445 55666666666666666555555
Q ss_pred CCCCCCCcEEECCCCCCCCCCccccCCCCcccCCCcccEEEcCCCCCCccCcccCCCCCC--CCEEEccCCC
Q psy5670 187 FCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSR--LQELYLQGNI 256 (1269)
Q Consensus 187 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~--L~~L~L~~n~ 256 (1269)
|..+++|++|+|++|+++.++...|.. ...+++|+.|+|++|.++.++...|..++. |+.|++++|.
T Consensus 132 ~~~l~~L~~L~L~~N~l~~l~~~~~~~---~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 132 FEDMAQLQKLYLSQNQISRFPVELIKD---GNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp TTTCTTCCEEECCSSCCCSCCGGGTC-------CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred hCCcccCCEEECCCCcCCeeCHHHhcC---cccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCC
Confidence 555555555555555555554433321 112344555555555554444443444433 2344444443
No 121
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.70 E-value=1.4e-16 Score=170.33 Aligned_cols=179 Identities=26% Similarity=0.347 Sum_probs=116.1
Q ss_pred CEEEccCCCCccCCcccCCCCCCCcEEECCCCCCCCCCccccCCCCcccCCCcccEEEcCCCCCCccCcccCCCCCCCCE
Q psy5670 170 ESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQE 249 (1269)
Q Consensus 170 ~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 249 (1269)
+.++.+++.+..+|... .++|++|++++|+++.++...|.. +++|++|++++|.++.+++..|.++++|++
T Consensus 10 ~~v~c~~~~l~~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 80 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI---PAQTTYLDLETNSLKSLPNGVFDE------LTSLTQLYLGGNKLQSLPNGVFNKLTSLTY 80 (208)
T ss_dssp TEEECCSSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTT------CTTCSEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CEEEecCCCccCCCCCC---CCCCcEEEcCCCccCcCChhhhcc------cccCcEEECCCCccCccChhhcCCCCCcCE
Confidence 45666666666666543 346777777777766655544433 456777777777777666666667777777
Q ss_pred EEccCCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCCcccccCcccccCCCCCCEEECcCCCC
Q psy5670 250 LYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNEL 329 (1269)
Q Consensus 250 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 329 (1269)
|++++|.++.+.+..|.++++|++|++++|+++.+++..|..+++|++|++++|.++++++..|..+++|+.|++++|.+
T Consensus 81 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 160 (208)
T 2o6s_A 81 LNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW 160 (208)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred EECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCe
Confidence 77777777766666666777777777777777777666666677777777777777766666666677777777776654
Q ss_pred CccccCcccccCCCCccEEEcCCCCCcccCchhhcCC
Q psy5670 330 TEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDL 366 (1269)
Q Consensus 330 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 366 (1269)
.. .+++|+.|+++.|.+++..+..++.+
T Consensus 161 ~~---------~~~~l~~L~~~~n~~~g~ip~~~~~l 188 (208)
T 2o6s_A 161 DC---------TCPGIRYLSEWINKHSGVVRNSAGSV 188 (208)
T ss_dssp CC---------CTTTTHHHHHHHHHCTTTBBCTTSSB
T ss_pred ec---------CCCCHHHHHHHHHhCCceeeccCccc
Confidence 32 34556666666666665555444433
No 122
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.70 E-value=1.4e-16 Score=179.54 Aligned_cols=170 Identities=29% Similarity=0.424 Sum_probs=91.1
Q ss_pred CCCCcEEEccCCcccccCcccccCCCCCCEEEccCCCCCccChhhhcCCCCCcEEEccCCCCCCchhhhcCCCCCcEEEC
Q psy5670 390 LSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDL 469 (1269)
Q Consensus 390 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L 469 (1269)
+++|+.|++++|.+..+. .+..+++|+.|++++|.+.++.+ +..+++|++|++++|.++.+|. +..+++|++|++
T Consensus 45 l~~L~~L~l~~~~i~~~~--~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L 119 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSL 119 (291)
T ss_dssp HHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEEC
T ss_pred cCcccEEEccCCCcccCh--hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCChh-hccCCCCCEEEC
Confidence 344444444444444332 23444445555555555444433 4455555555555555555443 455555555555
Q ss_pred CCCCCCccChhhhhccccCCeeeccCCcCCCCChhhhcCCCCCCEEEcCCCccccccccccCCCCCccEEEccccccccc
Q psy5670 470 GDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDI 549 (1269)
Q Consensus 470 s~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~l 549 (1269)
++|.++++ ..+..+++|+.|++++|.++.+ ..+..+++|+.|++++|+++++.+ +..+++|+.|++++|.++++
T Consensus 120 ~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l 193 (291)
T 1h6t_A 120 EHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL 193 (291)
T ss_dssp TTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC
T ss_pred CCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC
Confidence 55555554 2345555556666666655554 235556666666666666665544 55566666666666666655
Q ss_pred CCcCCCCCCCcEEEccCCcCcc
Q psy5670 550 GGLFPKLPNLVWLNISENLLEW 571 (1269)
Q Consensus 550 ~~~~~~l~~L~~L~Ls~n~l~~ 571 (1269)
+. +..+++|+.|++++|.+..
T Consensus 194 ~~-l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 194 RA-LAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp GG-GTTCTTCSEEEEEEEEEEC
T ss_pred hh-hccCCCCCEEECcCCcccC
Confidence 43 5556666666666665543
No 123
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.68 E-value=4.3e-16 Score=190.15 Aligned_cols=188 Identities=23% Similarity=0.302 Sum_probs=117.1
Q ss_pred CCcEEEccCCCCCCCCcccccCCCCCcEEEeeCCcccccCcccccCCCCCCEEECcCCCCCccccCcccccCCCCccEEE
Q psy5670 270 SLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLN 349 (1269)
Q Consensus 270 ~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ 349 (1269)
+|+.|++++|.++++|...+ ++|+.|+|++|.++.++ ..+++|+.|++++|.+++ ++. +.+ +|+.|+
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~---~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N~l~~--ip~--l~~--~L~~L~ 126 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLP---PQITVLEITQNALISLP----ELPASLEYLDACDNRLST--LPE--LPA--SLKHLD 126 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCC---TTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSC--CCC--CCT--TCCEEE
T ss_pred CccEEEeCCCCCCccCHhHc---CCCCEEECcCCCCcccc----cccCCCCEEEccCCCCCC--cch--hhc--CCCEEE
Confidence 56666666666666555432 45666666666666544 234566666666666654 322 333 566666
Q ss_pred cCCCCCcccCchhhcCCCCCcEEEccCCcccccccccccCCCCCcEEEccCCcccccCcccccCCCCCCEEEccCCCCCc
Q psy5670 350 IAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEY 429 (1269)
Q Consensus 350 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~ 429 (1269)
+++|.+++++. .+++|+.|++++|.++.++. .+++|+.|++++|++++++. +. ++|+.|+|++|.++.
T Consensus 127 Ls~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~lp~--l~--~~L~~L~Ls~N~L~~ 194 (571)
T 3cvr_A 127 VDNNQLTMLPE----LPALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTFLPE--LP--ESLEALDVSTNLLES 194 (571)
T ss_dssp CCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC--CC--TTCCEEECCSSCCSS
T ss_pred CCCCcCCCCCC----cCccccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCCcch--hh--CCCCEEECcCCCCCc
Confidence 66666666544 35666666666666666553 34566667776666666443 33 667777777776665
Q ss_pred cChhhhcCCCCC-------cEEEccCCCCCCchhhhcCCCCCcEEECCCCCCCccChhhhhccc
Q psy5670 430 IEENALKNSTSL-------QDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLH 486 (1269)
Q Consensus 430 ~~~~~~~~l~~L-------~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~ 486 (1269)
++. +.. +| +.|+|++|.++.+|..+..+++|+.|++++|.+++..+..+..+.
T Consensus 195 lp~--~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 195 LPA--VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp CCC--CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred hhh--HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 544 332 45 888888888888888777788888888888888877776665543
No 124
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.68 E-value=3.5e-16 Score=176.36 Aligned_cols=173 Identities=30% Similarity=0.427 Sum_probs=119.0
Q ss_pred CCCCCcEEEccCCcccccccccccCCCCCcEEEccCCcccccCcccccCCCCCCEEEccCCCCCccChhhhcCCCCCcEE
Q psy5670 365 DLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDF 444 (1269)
Q Consensus 365 ~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 444 (1269)
.+++|+.|++++|.+..++. +..+++|+.|++++|+++++.+ +..+++|+.|++++|.+..+. .+..+++|++|
T Consensus 44 ~l~~L~~L~l~~~~i~~~~~--~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L 117 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLS--SLKDLKKLKSL 117 (291)
T ss_dssp HHHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGG--GGTTCTTCCEE
T ss_pred hcCcccEEEccCCCcccChh--HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCCh--hhccCCCCCEE
Confidence 34555566666655555532 4555666666666666655543 556666666666666666543 26667777777
Q ss_pred EccCCCCCCchhhhcCCCCCcEEECCCCCCCccChhhhhccccCCeeeccCCcCCCCChhhhcCCCCCCEEEcCCCcccc
Q psy5670 445 HLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQK 524 (1269)
Q Consensus 445 ~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~ 524 (1269)
++++|.++.++ .+..+++|++|++++|.++++ ..+..+++|+.|++++|.+..+++ +..+++|+.|++++|++++
T Consensus 118 ~L~~n~i~~~~-~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~ 192 (291)
T 1h6t_A 118 SLEHNGISDIN-GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD 192 (291)
T ss_dssp ECTTSCCCCCG-GGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred ECCCCcCCCCh-hhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC
Confidence 77777777664 466777777777777777776 356777788888888888877665 7778888888888888877
Q ss_pred ccccccCCCCCccEEEcccccccccC
Q psy5670 525 VEAGTFDNNSNLVAIRLDGNYLTDIG 550 (1269)
Q Consensus 525 ~~~~~~~~~~~L~~L~L~~n~l~~l~ 550 (1269)
+. .+..+++|+.|++++|.++..|
T Consensus 193 l~--~l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 193 LR--ALAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp CG--GGTTCTTCSEEEEEEEEEECCC
T ss_pred Ch--hhccCCCCCEEECcCCcccCCc
Confidence 64 3777888888888888877654
No 125
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.67 E-value=1.3e-16 Score=185.32 Aligned_cols=116 Identities=18% Similarity=0.360 Sum_probs=76.1
Q ss_pred CCCCEEeCCC-CCCcccCcccccCCcccCeeecccccCcccChhhhhcCcccceEeccCccceeeecc-cccCCccEEEe
Q psy5670 851 KELIILRLDD-NRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVW-HLSSQIQSITL 928 (1269)
Q Consensus 851 ~~L~~L~L~~-N~l~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~-~~~~~l~~l~l 928 (1269)
++|+.|+|++ |.|+.+++.+|.+|++|+.|+|++|+|+++++..|.++++|+.|+|++|+|+.+++. |....|+.|+|
T Consensus 31 ~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~L~~l~l 110 (347)
T 2ifg_A 31 ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVL 110 (347)
T ss_dssp SCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCCEEEC
T ss_pred CCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCCceEEEe
Confidence 3455555553 555555555555555555555555555555555555556666666666666665555 42223788999
Q ss_pred eCCcccccCCcHHHHHHHHHhccCCcCccCcceeccCCcc
Q psy5670 929 TSNPWSCDCDFTEKFRDYLQRSRSSVHDISQIRCMTGSEV 968 (1269)
Q Consensus 929 ~~Np~~C~C~~~~~~~~w~~~~~~~i~~~~~~~C~~p~~~ 968 (1269)
.+|+|.|+|++ .||..|++.....+ +...+.|..|...
T Consensus 111 ~~N~~~c~c~l-~~~~~~~~~~~~~l-~~~~~~C~~~~~l 148 (347)
T 2ifg_A 111 SGNPLHCSCAL-RWLQRWEEEGLGGV-PEQKLQCHGQGPL 148 (347)
T ss_dssp CSSCCCCCGGG-HHHHHHHHTTCSSC-GGGCCCCSSSSCS
T ss_pred eCCCccCCCcc-HHHHHHHHhCcccc-cccCCCCCCChHH
Confidence 99999999996 79999998765444 4578999988743
No 126
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.66 E-value=8.7e-15 Score=172.89 Aligned_cols=338 Identities=14% Similarity=0.250 Sum_probs=221.8
Q ss_pred ccCCCchhccCCc-ccceeEeccccCCCCChhhccCCccCceeecccccCCCCccceeccchhhhhcCCCCCEEEccCCC
Q psy5670 100 QSSLSPGSFQTLI-DLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHNVFTDELQSLESLDLSMNS 178 (1269)
Q Consensus 100 ~~~i~~~~f~~l~-~L~~L~L~~~~i~~i~~~~f~~l~~L~~L~L~~~~~~~~~~~~~i~~~~f~~~l~~L~~L~Ls~n~ 178 (1269)
...|++.+|.+++ .|+.+.+.. .++.|...+|.+|.+|+.+.+..+. +.....+...+| .++.+|+.+.+..+
T Consensus 51 Vt~Ig~~aF~~~~~~L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~---p~~l~~Ig~~aF-~~c~~L~~i~~~~~- 124 (394)
T 4gt6_A 51 VSKIGDRVFCNYKYVLTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNK---PSCVKKIGRQAF-MFCSELTDIPILDS- 124 (394)
T ss_dssp EEEECTTTTTTCCSCCCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGC---CCCCCEECTTTT-TTCTTCCBCGGGTT-
T ss_pred eeEcCHhhccCCCCcCEEEEECC-CeeEEhHHHhhCCccCceEeecCCC---CCeeeEechhhc-hhcccceeeccCCc-
Confidence 4578889999985 599999985 4889999999999999999986432 223346778889 99999999888754
Q ss_pred CccCCcccCCCCCCCcEEECCCCCCCCCCccccCCCCcccCCCcccEEEcCCCCCCccCcccCCCCCCCCEEEccCCCCc
Q psy5670 179 IWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILT 258 (1269)
Q Consensus 179 l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 258 (1269)
+..++..+|..+.+|+.+.+.. .+..+....|.. +..|+.+.+..+ ++.+...+|.+ .+|+.+.+..+ +.
T Consensus 125 ~~~I~~~aF~~c~~L~~i~lp~-~~~~I~~~~F~~------c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~-~~ 194 (394)
T 4gt6_A 125 VTEIDSEAFHHCEELDTVTIPE-GVTSVADGMFSY------CYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAK-VT 194 (394)
T ss_dssp CSEECTTTTTTCTTCCEEECCT-TCCEECTTTTTT------CTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTT-CC
T ss_pred cceehhhhhhhhcccccccccc-eeeeecccceec------ccccccccccce-eeEeccccccc-cceeEEEECCc-cc
Confidence 7888888899999999999875 355555555543 577888888754 77777777765 56888887653 45
Q ss_pred ccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCCcccccCcccccCCCCCCEEECcCCCCCccccCccc
Q psy5670 259 FLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAAT 338 (1269)
Q Consensus 259 ~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 338 (1269)
.+...+|.++.+|+...........+....+........... .+.....+..+.+... +.. +...+
T Consensus 195 ~i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~ip~~-v~~--i~~~a 260 (394)
T 4gt6_A 195 RIGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYALI-----------RYPSQREDPAFKIPNG-VAR--IETHA 260 (394)
T ss_dssp EECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEE-----------ECCTTCCCSEEECCTT-EEE--ECTTT
T ss_pred ccccchhhhccccceecccccccccccceeeccccccccccc-----------ccccccccceEEcCCc-ceE--cccce
Confidence 556667888888887777665544443333222211111110 1122233444444322 222 44566
Q ss_pred ccCCCCccEEEcCCCCCcccCchhhcCCCCCcEEEccCCcccccccccccCCCCCcEEEccCCcccccCcccccCCCCCC
Q psy5670 339 FSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALS 418 (1269)
Q Consensus 339 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 418 (1269)
|.++..|+.+.+..+ +..+....|.++..|+.+.+. +.++.++..+|.++.+|+.+.|.. .++.+...+|.+|.+|+
T Consensus 261 F~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~C~~L~ 337 (394)
T 4gt6_A 261 FDSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPE-GITQILDDAFAGCEQLE 337 (394)
T ss_dssp TTTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCC
T ss_pred eeecccccEEecccc-cceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCC-cccEehHhHhhCCCCCC
Confidence 777777777777543 345666667777777777775 456677777777777777777764 36667777777788888
Q ss_pred EEEccCCCCCccChhhhcCCCCCcEEEccCCCCCCchhhhcCCCCCcEEECCCCC
Q psy5670 419 VLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNL 473 (1269)
Q Consensus 419 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~ 473 (1269)
.+.|.. .+..+...+|.+|++|+.+++.++... -..+..+.+|+.+.+..+.
T Consensus 338 ~i~ip~-sv~~I~~~aF~~C~~L~~i~~~~~~~~--~~~~~~~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 338 RIAIPS-SVTKIPESAFSNCTALNNIEYSGSRSQ--WNAISTDSGLQNLPVAPGS 389 (394)
T ss_dssp EEEECT-TCCBCCGGGGTTCTTCCEEEESSCHHH--HHTCBCCCCC---------
T ss_pred EEEECc-ccCEEhHhHhhCCCCCCEEEECCceee--hhhhhccCCCCEEEeCCCC
Confidence 887764 367777778888888888887775421 1345566777777776553
No 127
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}
Probab=99.66 E-value=8.6e-17 Score=163.00 Aligned_cols=97 Identities=19% Similarity=0.350 Sum_probs=88.4
Q ss_pred CCceeEEEEcccCCH--HHHHHHHHHhhhcCCCCceEEEecccCCCCCchhHHHHHHHHhcceEEEEecccchhhhhhHH
Q psy5670 1082 DKLFDAFVSYSSKDE--AFVAEELAPILENGDPAYKLCLHYREFPVGGYIGDTIVQAVESSRRTIMVLSENFIKSEWCRY 1159 (1269)
Q Consensus 1082 ~~~yDafvsy~~~d~--~~v~~~l~~~Le~~~~~~~l~~~~rd~~~G~~~~~~i~~~i~~Sr~~i~vlS~~~~~s~w~~~ 1159 (1269)
.+.|||||||+++|. .|| .+|.+.|++ .|+++|++++++.+|+.|.++|.++|+.||..|+|+|++|+.|.||..
T Consensus 33 ~~~yDVFISfrg~D~r~~Fv-~~L~~aL~~--~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa~S~WCl~ 109 (204)
T 3ozi_A 33 SVEYEVFLSFRGPDTREQFT-DFLYQSLRR--YKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKWCLM 109 (204)
T ss_dssp -CCCCEEEEECHHHHTTTHH-HHHHHHHHH--TTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGGGCHHHHH
T ss_pred CcCCeEEEeccccCCCHHHH-HHHHHHHHH--CCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEcccccCcHHHH
Confidence 578999999999997 456 669999995 699999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCC-CeEEEEEeC
Q psy5670 1160 EFKSAHHQVLRGK-KRLIVILLG 1181 (1269)
Q Consensus 1160 e~~~a~~~~~~~~-~~~i~i~~~ 1181 (1269)
|+..++...-+.+ ..||||+|+
T Consensus 110 EL~~I~e~~~~~~~~~ViPIFY~ 132 (204)
T 3ozi_A 110 ELAEIVRRQEEDPRRIILPIFYM 132 (204)
T ss_dssp HHHHHHHHHHHCTTSEECCEEES
T ss_pred HHHHHHHHHHhcCCeeeEEEEee
Confidence 9999998876544 889999994
No 128
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.66 E-value=6.5e-16 Score=162.49 Aligned_cols=172 Identities=26% Similarity=0.408 Sum_probs=129.5
Q ss_pred cEEEccCCcCccccccccCCCccEEECCCCCcccccccccccccccccEEEcCCCccccccCCccc--CCccEEEccCcc
Q psy5670 560 VWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIP--HSVENLFLTNNL 637 (1269)
Q Consensus 560 ~~L~Ls~n~l~~~~~~~lp~~L~~L~Ls~n~l~~~~~~~~l~~~~~L~~LdLs~N~l~~~~~~~~~--~~L~~L~Ls~N~ 637 (1269)
+.+++++|+++.++. .+|..++.|++++|.|+.++. .+..+.+|+.|+|++|+|+++.+..+. .+|++|+|++|+
T Consensus 13 ~~l~~~~~~l~~ip~-~~~~~l~~L~L~~n~i~~ip~--~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPK-GIPRDVTELYLDGNQFTLVPK--ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSCCSSCCS-CCCTTCCEEECCSSCCCSCCG--GGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCCCcCCC-CCCCCCCEEECCCCcCchhHH--HhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 345555555555542 245567777777777777763 456788999999999999998876655 589999999999
Q ss_pred cccccCCccCCCCCccEEEcCCCCcccccccccccccCCCCCCCCceEecCCccccccCChhHHhhccccccCCCccccc
Q psy5670 638 ISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHKNIPDFYIGENPFQCDCNMQWLQSYSVNKERNKPNLVDL 717 (1269)
Q Consensus 638 i~~~~~~~f~~~~~L~~LdLs~N~l~~l~~~~~~~~~~~~~~~l~~l~l~~Np~~c~c~~~~l~~~~~~~~~~~~~~~~l 717 (1269)
|+++.+..|..+++|+.|+|++|+|+.++...+ ....+++.+++++|||.|||.+.|+..+-... ..+.
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~-----~~l~~L~~L~L~~N~~~C~c~l~~l~~~~~~~------~~~~ 158 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAF-----NDLSALSHLAIGANPLYCDCNMQWLSDWVKSE------YKEP 158 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTT-----TTCTTCCEEECCSSCEECSGGGHHHHHHHHHS------SCCC
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhh-----hcCccccEEEeCCCCeecCCcCHHHHHHHHhc------cCCC
Confidence 999999999999999999999999999888665 35578899999999999999999998764311 1123
Q ss_pred CccccccccccCCCcccccccCCCcccccc
Q psy5670 718 DTVTCKLLYNRANPAILLKEAHSNQFLCEY 747 (1269)
Q Consensus 718 ~~~~c~~~~~~~~~~~~l~~~~~~~~~~~~ 747 (1269)
....|..+. ...+..+.+++...+.|.+
T Consensus 159 ~~~~C~~P~--~l~g~~l~~~~~~~~~~~~ 186 (193)
T 2wfh_A 159 GIARCAGPG--EMADKLLLTTPSKKFTCAA 186 (193)
T ss_dssp SCCBEEESG--GGTTCBTTTSCGGGCCC--
T ss_pred CCcCcCCch--HHCCCCcccCChHHeeehh
Confidence 456787654 3455667777766666554
No 129
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.65 E-value=3.5e-15 Score=176.31 Aligned_cols=334 Identities=17% Similarity=0.285 Sum_probs=188.8
Q ss_pred CCCCCccccCCCCcccCCCcccEEEcCCCCCCccCcccCCCCCCCCEEEccCCC---CcccchhhhcCCCCCcEEEccCC
Q psy5670 203 LSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNI---LTFLADHALDGLNSLTVLNLSVN 279 (1269)
Q Consensus 203 l~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~Ls~n 279 (1269)
++.+...+|.+ +...|+.+.+.. .++.+...+|.+|.+|+.+.+..+. ++.+...+|.++.+|+.+.+..+
T Consensus 51 Vt~Ig~~aF~~-----~~~~L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~ 124 (394)
T 4gt6_A 51 VSKIGDRVFCN-----YKYVLTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS 124 (394)
T ss_dssp EEEECTTTTTT-----CCSCCCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT
T ss_pred eeEcCHhhccC-----CCCcCEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc
Confidence 34455555543 113477777764 3777777777777777777776553 66666677777777777766554
Q ss_pred CCCCCCcccccCCCCCcEEEeeCCcccccCcccccCCCCCCEEECcCCCCCccccCcccccCCCCccEEEcCCCCCcccC
Q psy5670 280 NLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLD 359 (1269)
Q Consensus 280 ~l~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 359 (1269)
++.++...|..+.+|+.+.+.. .+..+....|..+.+|+.+.+..+ +.. +...+|.+ .+|+.+.+..+ +..+.
T Consensus 125 -~~~I~~~aF~~c~~L~~i~lp~-~~~~I~~~~F~~c~~L~~i~~~~~-~~~--I~~~aF~~-~~l~~i~ip~~-~~~i~ 197 (394)
T 4gt6_A 125 -VTEIDSEAFHHCEELDTVTIPE-GVTSVADGMFSYCYSLHTVTLPDS-VTA--IEERAFTG-TALTQIHIPAK-VTRIG 197 (394)
T ss_dssp -CSEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCE--ECTTTTTT-CCCSEEEECTT-CCEEC
T ss_pred -cceehhhhhhhhcccccccccc-eeeeecccceecccccccccccce-eeE--eccccccc-cceeEEEECCc-ccccc
Confidence 6666667777777777777753 355566666777777777777654 222 44555544 45666666543 34455
Q ss_pred chhhcCCCCCcEEEccCCcccccccccccCCCCCcEEEccCCcccccCcccccCCCCCCEEEccCCCCCccChhhhcCCC
Q psy5670 360 SSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNST 439 (1269)
Q Consensus 360 ~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~ 439 (1269)
...|..+.+++...........+....+........ ....+.....+..+.+. +.+..+...+|.++.
T Consensus 198 ~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~ip-~~v~~i~~~aF~~c~ 265 (394)
T 4gt6_A 198 TNAFSECFALSTITSDSESYPAIDNVLYEKSANGDY-----------ALIRYPSQREDPAFKIP-NGVARIETHAFDSCA 265 (394)
T ss_dssp TTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCE-----------EEEECCTTCCCSEEECC-TTEEEECTTTTTTCS
T ss_pred cchhhhccccceecccccccccccceeecccccccc-----------cccccccccccceEEcC-CcceEcccceeeecc
Confidence 555666666666665544433332222211110000 00011122233444443 234455556666667
Q ss_pred CCcEEEccCCCCCCch-hhhcCCCCCcEEECCCCCCCccChhhhhccccCCeeeccCCcCCCCChhhhcCCCCCCEEEcC
Q psy5670 440 SLQDFHLNGNKLTEIP-KVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLA 518 (1269)
Q Consensus 440 ~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls 518 (1269)
.|+.+.+..+.. .+. .++.++++|+.+.+. +.++.+...+|.+|.+|+.++|..+ ++.|...+|.+|.+|+.+.+.
T Consensus 266 ~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip 342 (394)
T 4gt6_A 266 YLASVKMPDSVV-SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIP 342 (394)
T ss_dssp SCCEEECCTTCC-EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEC
T ss_pred cccEEecccccc-eecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEEC
Confidence 777666654332 232 345666667776664 3466666667777777777777643 666666777777777777775
Q ss_pred CCccccccccccCCCCCccEEEcccccccccCCcCCCCCCCcEEEccCC
Q psy5670 519 SNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISEN 567 (1269)
Q Consensus 519 ~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n 567 (1269)
.+ ++.+...+|.+|++|+.+++.++.... ..+..+.+|+.+.+..+
T Consensus 343 ~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~--~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 343 SS-VTKIPESAFSNCTALNNIEYSGSRSQW--NAISTDSGLQNLPVAPG 388 (394)
T ss_dssp TT-CCBCCGGGGTTCTTCCEEEESSCHHHH--HTCBCCCCC--------
T ss_pred cc-cCEEhHhHhhCCCCCCEEEECCceeeh--hhhhccCCCCEEEeCCC
Confidence 43 666667777777777777776654321 23445556666655544
No 130
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=99.64 E-value=4.7e-17 Score=163.09 Aligned_cols=101 Identities=28% Similarity=0.352 Sum_probs=88.7
Q ss_pred cCCCCceeEEEEcccCCHH-HHHHHHHHhhhcCCCCceEEEecccCCCCCchhHHHHHHHHhcceEEEEecccchhhhhh
Q psy5670 1079 DDRDKLFDAFVSYSSKDEA-FVAEELAPILENGDPAYKLCLHYREFPVGGYIGDTIVQAVESSRRTIMVLSENFIKSEWC 1157 (1269)
Q Consensus 1079 ~~~~~~yDafvsy~~~d~~-~v~~~l~~~Le~~~~~~~l~~~~rd~~~G~~~~~~i~~~i~~Sr~~i~vlS~~~~~s~w~ 1157 (1269)
...++.|||||||+++|+. || +.|.+.|++ .|+++|++++|+.||+.+.++|.++|++||++|+|+|++|+.|.||
T Consensus 15 ~~~~~~~dvFISy~~~D~~~~~-~~L~~~L~~--~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc 91 (154)
T 3h16_A 15 LTSAPPHDIFISHAWEDKADFV-EALAHTLRA--AGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWP 91 (154)
T ss_dssp ---CCSEEEEEEEEGGGTTTTH-HHHHHHHHH--HTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCC
T ss_pred cCCCCCceEEEECcccChHHHH-HHHHHHHHH--CCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHH
Confidence 3457899999999999985 55 559999995 6999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCeEEEEEeCC
Q psy5670 1158 RYEFKSAHHQVLRGKKRLIVILLGE 1182 (1269)
Q Consensus 1158 ~~e~~~a~~~~~~~~~~~i~i~~~~ 1182 (1269)
..|++.|+.+..+.+.+||||+++.
T Consensus 92 ~~El~~~~~~~~~~~~~iiPV~~~v 116 (154)
T 3h16_A 92 QKELDGLFQLESSGRSRILPIWHKV 116 (154)
T ss_dssp HHHHHHHTCCCTTSCCCEEEEEESC
T ss_pred HHHHHHHHHHHhcCCCEEEEEEecC
Confidence 9999999886544447899999943
No 131
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.63 E-value=2.3e-15 Score=161.99 Aligned_cols=153 Identities=26% Similarity=0.377 Sum_probs=109.0
Q ss_pred CEEEccCCCCccCCcccCCCCCCCcEEECCCCCCCCCCcc-ccCCCCcccCCCcccEEEcCCCCCCccCcccCCCCCCCC
Q psy5670 170 ESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATF-SFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQ 248 (1269)
Q Consensus 170 ~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 248 (1269)
+.+++++|.++++|... .+.+++|+|++|+++.+.+. .|. .+++|+.|+|++|.++.+++..|.++++|+
T Consensus 14 ~~l~~s~n~l~~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~------~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~ 84 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHI---PQYTAELRLNNNEFTVLEATGIFK------KLPQLRKINFSNNKITDIEEGAFEGASGVN 84 (220)
T ss_dssp TEEECCSSCCSSCCSCC---CTTCSEEECCSSCCCEECCCCCGG------GCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred CEeEeCCCCcccCccCC---CCCCCEEEcCCCcCCccCchhhhc------cCCCCCEEECCCCcCCEECHHHhCCCCCCC
Confidence 47788888888877643 23467777777777766432 232 256777777777777777766777777777
Q ss_pred EEEccCCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCCcccccCcccccCCCCCCEEECcCCC
Q psy5670 249 ELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNE 328 (1269)
Q Consensus 249 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 328 (1269)
+|+|++|.++.+.+..|.++++|++|+|++|+++.+++..|..+++|++|+|++|.++++.+..|..+++|+.|++++|.
T Consensus 85 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 85 EILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp EEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred EEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence 77777777777777777777777777777777777766667777777777777777777766677777777777777776
Q ss_pred CCc
Q psy5670 329 LTE 331 (1269)
Q Consensus 329 l~~ 331 (1269)
+..
T Consensus 165 l~c 167 (220)
T 2v70_A 165 FNC 167 (220)
T ss_dssp EEC
T ss_pred CcC
Confidence 653
No 132
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.63 E-value=2.4e-15 Score=158.23 Aligned_cols=174 Identities=17% Similarity=0.314 Sum_probs=127.1
Q ss_pred cEEEccCCcCccccccccCCCccEEECCCCCcccccccccccccccccEEEcCCCccccccCCccc--CCccEEEccCcc
Q psy5670 560 VWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIP--HSVENLFLTNNL 637 (1269)
Q Consensus 560 ~~L~Ls~n~l~~~~~~~lp~~L~~L~Ls~n~l~~~~~~~~l~~~~~L~~LdLs~N~l~~~~~~~~~--~~L~~L~Ls~N~ 637 (1269)
+.+++++|+++.++. .+|..++.|++++|+|+.++....+..+++|++|+|++|+|+++.+..+. .+|++|+|++|+
T Consensus 11 ~~l~~s~~~l~~ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 89 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPR-DIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK 89 (192)
T ss_dssp TEEECTTSCCSSCCS-CCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CEEEcCCCCcCcCcc-CCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc
Confidence 344555555544432 23446667777777776665432355678899999999999988766554 589999999999
Q ss_pred cccccCCccCCCCCccEEEcCCCCcccccccccccccCCCCCCCCceEecCCccccccCChhHHhhccccccCCCccccc
Q psy5670 638 ISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHKNIPDFYIGENPFQCDCNMQWLQSYSVNKERNKPNLVDL 717 (1269)
Q Consensus 638 i~~~~~~~f~~~~~L~~LdLs~N~l~~l~~~~~~~~~~~~~~~l~~l~l~~Np~~c~c~~~~l~~~~~~~~~~~~~~~~l 717 (1269)
|+++.+..|.++++|+.|+|++|+|+++.+..+ ....+|+.+++++|+|.|+|.+.|+..+-... ....
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~-----~~l~~L~~L~L~~N~l~c~c~l~~~~~~l~~~------~~~~ 158 (192)
T 1w8a_A 90 IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSF-----EHLNSLTSLNLASNPFNCNCHLAWFAEWLRKK------SLNG 158 (192)
T ss_dssp CCEECSSSSTTCTTCCEEECCSSCCCEECTTSS-----TTCTTCCEEECTTCCBCCSGGGHHHHHHHHHH------CCSG
T ss_pred CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHh-----hcCCCCCEEEeCCCCccCcCcchHHHHHHHHc------CCCC
Confidence 999999999999999999999999999877655 35568899999999999999999987643210 0112
Q ss_pred CccccccccccCCCcccccccCCCcccccc
Q psy5670 718 DTVTCKLLYNRANPAILLKEAHSNQFLCEY 747 (1269)
Q Consensus 718 ~~~~c~~~~~~~~~~~~l~~~~~~~~~~~~ 747 (1269)
....|..+. ...+..+.++..++|.|.-
T Consensus 159 ~~~~C~~P~--~l~~~~l~~l~~~~~~C~~ 186 (192)
T 1w8a_A 159 GAARCGAPS--KVRDVQIKDLPHSEFKCSS 186 (192)
T ss_dssp GGCBBCSST--TTTTSBGGGSCTTTCCCCC
T ss_pred CCCCCCCCh--HHcCCChhhCcHhhcCcCC
Confidence 345676543 4566778888888887653
No 133
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.63 E-value=9.8e-16 Score=189.31 Aligned_cols=169 Identities=31% Similarity=0.445 Sum_probs=73.0
Q ss_pred CCccEEEcCCCCCcccCchhhcCCCCCcEEEccCCcccccccccccCCCCCcEEEccCCcccccCcccccCCCCCCEEEc
Q psy5670 343 HRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSL 422 (1269)
Q Consensus 343 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 422 (1269)
++|+.|++++|.+..++ .+..+++|+.|+|++|.++.+++ +..+++|+.|+|++|.+.++. .+..+++|+.|+|
T Consensus 43 ~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~L 116 (605)
T 1m9s_A 43 NSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLS--SLKDLKKLKSLSL 116 (605)
T ss_dssp TTCCCCBCTTCCCCCCT--TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCT--TSTTCTTCCEEEC
T ss_pred CCCCEEECcCCCCCCCh--HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCCh--hhccCCCCCEEEe
Confidence 33444444444433332 13334444444444444444332 334444444444444443322 2334444444444
Q ss_pred cCCCCCccChhhhcCCCCCcEEEccCCCCCCchhhhcCCCCCcEEECCCCCCCccChhhhhccccCCeeeccCCcCCCCC
Q psy5670 423 DNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNIS 502 (1269)
Q Consensus 423 s~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~i~ 502 (1269)
++|.+..+. .+..+++|+.|+|++|.++.+ ..+..+++|+.|+|++|.+.++.+ +..+++|+.|+|++|.+..++
T Consensus 117 s~N~l~~l~--~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l~ 191 (605)
T 1m9s_A 117 EHNGISDIN--GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLR 191 (605)
T ss_dssp TTSCCCCCG--GGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCG
T ss_pred cCCCCCCCc--cccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCCh
Confidence 444444331 244444444444444444444 234444444444444444444433 444444444444444444432
Q ss_pred hhhhcCCCCCCEEEcCCCcccc
Q psy5670 503 KGVFEKLSVLTILNLASNKIQK 524 (1269)
Q Consensus 503 ~~~f~~l~~L~~L~Ls~n~i~~ 524 (1269)
.+..+++|+.|+|++|++.+
T Consensus 192 --~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 192 --ALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp --GGTTCTTCSEEECCSEEEEC
T ss_pred --HHccCCCCCEEEccCCcCcC
Confidence 24444445555555444443
No 134
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.62 E-value=5.6e-16 Score=171.79 Aligned_cols=170 Identities=19% Similarity=0.264 Sum_probs=101.1
Q ss_pred CCcEEECCCCCCCccChhhhhccccCCeeeccCCcCCCCChhhhcCCCCCCEEEcCCCccccccccccCCCCCccEEEcc
Q psy5670 463 SLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLD 542 (1269)
Q Consensus 463 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~L~ 542 (1269)
++..++++++.++++. .+..+++|+.|++++|.+..++ .+..+++|+.|++++|+++++.+ +..+++|+.|+++
T Consensus 20 ~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred HHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence 3444455555555443 2445555555555555555544 24555555555555555555443 4455555555555
Q ss_pred cccccccCCcCCCCCCCcEEEccCCcCccccccccCCCccEEECCCCCcccccccccccccccccEEEcCCCccccccCC
Q psy5670 543 GNYLTDIGGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGN 622 (1269)
Q Consensus 543 ~n~l~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~lp~~L~~L~Ls~n~l~~~~~~~~l~~~~~L~~LdLs~N~l~~~~~~ 622 (1269)
+|++++++.. .. .+|++|++++|++++++. +..+++|+.|++++|++++++..
T Consensus 94 ~N~l~~l~~~-----------------------~~-~~L~~L~L~~N~l~~~~~---l~~l~~L~~L~Ls~N~i~~~~~l 146 (263)
T 1xeu_A 94 RNRLKNLNGI-----------------------PS-ACLSRLFLDNNELRDTDS---LIHLKNLEILSIRNNKLKSIVML 146 (263)
T ss_dssp SSCCSCCTTC-----------------------CC-SSCCEEECCSSCCSBSGG---GTTCTTCCEEECTTSCCCBCGGG
T ss_pred CCccCCcCcc-----------------------cc-CcccEEEccCCccCCChh---hcCcccccEEECCCCcCCCChHH
Confidence 5555544322 12 455555555565555432 44566778888888888776543
Q ss_pred cccCCccEEEccCcccccccCCccCCCCCccEEEcCCCCcccccc
Q psy5670 623 AIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQ 667 (1269)
Q Consensus 623 ~~~~~L~~L~Ls~N~i~~~~~~~f~~~~~L~~LdLs~N~l~~l~~ 667 (1269)
.-.++|+.|+|++|+++++ ..+..+++|+.|++++|++...+.
T Consensus 147 ~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~~~ 189 (263)
T 1xeu_A 147 GFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEPV 189 (263)
T ss_dssp GGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECCCE
T ss_pred ccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCCcc
Confidence 3446788888888888777 467788888888888888876543
No 135
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=99.62 E-value=2.4e-16 Score=157.56 Aligned_cols=97 Identities=24% Similarity=0.410 Sum_probs=74.5
Q ss_pred CCceeEEEEcccCCH--HHHHHHHHHhhhcCCCCceEEEecccCCCCCchhHHHHHHHHhcceEEEEecccchhhhhhHH
Q psy5670 1082 DKLFDAFVSYSSKDE--AFVAEELAPILENGDPAYKLCLHYREFPVGGYIGDTIVQAVESSRRTIMVLSENFIKSEWCRY 1159 (1269)
Q Consensus 1082 ~~~yDafvsy~~~d~--~~v~~~l~~~Le~~~~~~~l~~~~rd~~~G~~~~~~i~~~i~~Sr~~i~vlS~~~~~s~w~~~ 1159 (1269)
.+.|||||||+++|. .|| .+|.+.|++ .|+++|++++|+.+|+.+.++|.++|+.||..|+|+|++|..|.||..
T Consensus 6 ~~~yDVFiSfrg~D~r~~Fv-~~L~~~L~~--~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl~ 82 (176)
T 3jrn_A 6 ATKYDVFLSFRGHDTRHNFI-SFLYKELVR--RSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLD 82 (176)
T ss_dssp -CCEEEEEEECHHHHTTTHH-HHHHHHHHH--TTCCEECCCC--------------CCTTEEEEEEEECTTTTTCHHHHH
T ss_pred CCCCeEEEECcCcccChHHH-HHHHHHHHH--CCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhHHH
Confidence 578999999999997 576 569999995 699999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCeEEEEEeC
Q psy5670 1160 EFKSAHHQVLRGKKRLIVILLG 1181 (1269)
Q Consensus 1160 e~~~a~~~~~~~~~~~i~i~~~ 1181 (1269)
|+..++...-+.+.+||||+++
T Consensus 83 EL~~i~~~~~~~~~~ViPIfy~ 104 (176)
T 3jrn_A 83 ELVTIMDFEKKGSITVMPIFYG 104 (176)
T ss_dssp HHHHHHHHHHTTSCEEEEEECS
T ss_pred HHHHHHhhhccCCCEEEEEEec
Confidence 9999998775555899999994
No 136
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.62 E-value=1.9e-15 Score=186.72 Aligned_cols=153 Identities=28% Similarity=0.414 Sum_probs=83.5
Q ss_pred ccCCCCccEEEcCCCCCcccCchhhcCCCCCcEEEccCCcccccccccccCCCCCcEEEccCCcccccCcccccCCCCCC
Q psy5670 339 FSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALS 418 (1269)
Q Consensus 339 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 418 (1269)
+..+++|+.|+|++|.+.++++ +..+++|+.|+|++|.+..++ .+..+++|+.|+|++|.+.++ ..+..+++|+
T Consensus 61 l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~ 134 (605)
T 1m9s_A 61 IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLS--SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLE 134 (605)
T ss_dssp GGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCT--TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCS
T ss_pred HccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCCh--hhccCCCCCEEEecCCCCCCC--ccccCCCccC
Confidence 3344444444444444444333 344444445555444444433 244555555555555555543 2345555566
Q ss_pred EEEccCCCCCccChhhhcCCCCCcEEEccCCCCCCchhhhcCCCCCcEEECCCCCCCccChhhhhccccCCeeeccCCcC
Q psy5670 419 VLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNI 498 (1269)
Q Consensus 419 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l 498 (1269)
.|+|++|.+.++ ..+..+++|+.|+|++|.+..++. +..+++|+.|+|++|.++++. .+..+++|+.|+|++|.+
T Consensus 135 ~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 135 SLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLR--ALAGLKNLDVLELFSQEC 209 (605)
T ss_dssp EEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCG--GGTTCTTCSEEECCSEEE
T ss_pred EEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCCh--HHccCCCCCEEEccCCcC
Confidence 666666655555 345566666666666666665554 566666666666666666652 356666677777777666
Q ss_pred CCCC
Q psy5670 499 SNIS 502 (1269)
Q Consensus 499 ~~i~ 502 (1269)
...+
T Consensus 210 ~~~p 213 (605)
T 1m9s_A 210 LNKP 213 (605)
T ss_dssp ECCC
T ss_pred cCCc
Confidence 5544
No 137
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.60 E-value=7.9e-15 Score=159.00 Aligned_cols=151 Identities=28% Similarity=0.395 Sum_probs=80.4
Q ss_pred ccEEEcCCCCCcccCchhhcCCCCCcEEEccCCcccccccccccCCCCCcEEEccCCcccccCcccccCCCCCCEEEccC
Q psy5670 345 LVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDN 424 (1269)
Q Consensus 345 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 424 (1269)
.+.++.+++.+..++... .++|++|++++|.++.+.+..|..+++|+.|+|++|++..+.+..|..+++|+.|+|++
T Consensus 21 ~~~v~c~~~~l~~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcCccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 344555555555554322 14555666666655555555555555555555555555555555555555555555555
Q ss_pred CCCCccChhhhcCCCCCcEEEccCCCCCCchhhhcCCCCCcEEECCCCCCCccChhhhhccccCCeeeccCCcC
Q psy5670 425 NELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNI 498 (1269)
Q Consensus 425 n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l 498 (1269)
|.+..+.+..|..+++|++|++++|.++.+|..+..+++|++|++++|.++++.+..|..+++|+.|+|++|.+
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred CcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCc
Confidence 55555555555555555555555555555555555555555555555555544443344444444444444433
No 138
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.59 E-value=1.4e-15 Score=168.61 Aligned_cols=147 Identities=23% Similarity=0.444 Sum_probs=67.1
Q ss_pred CCCCCCEEEccCCCCCccChhhhcCCCCCcEEEccCCCCCCchhhhcCCCCCcEEECCCCCCCccChhhhhccccCCeee
Q psy5670 413 SLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLR 492 (1269)
Q Consensus 413 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 492 (1269)
.+++|+.|++++|.+..+. .+..+++|++|++++|.++.++. +..+++|++|++++|.++++.... . ++|+.|+
T Consensus 39 ~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~~~--~-~~L~~L~ 112 (263)
T 1xeu_A 39 ELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNGIP--S-ACLSRLF 112 (263)
T ss_dssp HHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSCCTTCC--C-SSCCEEE
T ss_pred hcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccCCcCccc--c-CcccEEE
Confidence 3334444444444443332 23344444444444444444443 444444444444444444433211 1 4444444
Q ss_pred ccCCcCCCCChhhhcCCCCCCEEEcCCCccccccccccCCCCCccEEEcccccccccCCcCCCCCCCcEEEccCCcCc
Q psy5670 493 LTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLE 570 (1269)
Q Consensus 493 Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~l~ 570 (1269)
+++|.++.++ .+..+++|+.|++++|+++++. .+..+++|+.|++++|.++++ ..+..+++|+.|++++|.+.
T Consensus 113 L~~N~l~~~~--~l~~l~~L~~L~Ls~N~i~~~~--~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 113 LDNNELRDTD--SLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp CCSSCCSBSG--GGTTCTTCCEEECTTSCCCBCG--GGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEEEE
T ss_pred ccCCccCCCh--hhcCcccccEEECCCCcCCCCh--HHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCccc
Confidence 4444444443 2445555555555555555442 344455555555555555544 33444555555555555444
No 139
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.58 E-value=1e-14 Score=154.17 Aligned_cols=151 Identities=18% Similarity=0.260 Sum_probs=92.8
Q ss_pred CCCCccEEEcCCCCCcccCchhhcCCCCCcEEEccCCcccccccccccCCCCCcEEEccCCcccccCcccccCCCCCCEE
Q psy5670 341 GLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVL 420 (1269)
Q Consensus 341 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 420 (1269)
.+++|+.|++++|.+..++ .+..+++|++|++++|.++.++ .+..+++|++|++++|++++..+..+..+++|+.|
T Consensus 42 ~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLT--GIEYAHNIKDLTINNIHATNYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHTCCEEEEESSCCSCCT--TGGGCTTCSEEEEESCCCSCCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hcCCccEEeccCCCccChH--HHhcCCCCCEEEccCCCCCcch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 3455566666666655444 2555666666666666555443 35666777777777777766555566667777777
Q ss_pred EccCCCCCccChhhhcCCCCCcEEEccCCC-CCCchhhhcCCCCCcEEECCCCCCCccChhhhhccccCCeeeccCCcC
Q psy5670 421 SLDNNELEYIEENALKNSTSLQDFHLNGNK-LTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNI 498 (1269)
Q Consensus 421 ~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l 498 (1269)
++++|.+.+..+..+..+++|++|++++|. ++.+| .+..+++|++|++++|.++++. .+..+++|+.|++++|++
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC--
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCccc
Confidence 777777766556666666677777777765 66665 4566666666666666666543 345555555555555554
No 140
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.57 E-value=6.9e-15 Score=155.52 Aligned_cols=154 Identities=16% Similarity=0.136 Sum_probs=121.5
Q ss_pred hcCCCCCEEEccCCCCccCCcccCCCCCCCcEEECCCCCCCCCCccccCCCCcccCCCcccEEEcCCCCCCccCcccCCC
Q psy5670 164 DELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSR 243 (1269)
Q Consensus 164 ~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 243 (1269)
..+++|++|++++|.+..++. +..+++|++|++++|.+.... . +..+++|++|++++|.++...+..|++
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~~--l~~l~~L~~L~l~~n~~~~~~--~------l~~l~~L~~L~l~~n~l~~~~~~~l~~ 110 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINNIHATNYN--P------ISGLSNLERLRIMGKDVTSDKIPNLSG 110 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCTT--GGGCTTCSEEEEESCCCSCCG--G------GTTCTTCCEEEEECTTCBGGGSCCCTT
T ss_pred hhcCCccEEeccCCCccChHH--HhcCCCCCEEEccCCCCCcch--h------hhcCCCCCEEEeECCccCcccChhhcC
Confidence 567889999999999988873 688899999999998766543 2 234678999999999888755567888
Q ss_pred CCCCCEEEccCCCCcccchhhhcCCCCCcEEEccCCC-CCCCCcccccCCCCCcEEEeeCCcccccCcccccCCCCCCEE
Q psy5670 244 LSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNN-LVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVL 322 (1269)
Q Consensus 244 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 322 (1269)
+++|++|++++|.+++..+..+..+++|++|++++|. ++.++ .+..+++|++|++++|.++++. .+..+++|+.|
T Consensus 111 l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~--~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L 186 (197)
T 4ezg_A 111 LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQL 186 (197)
T ss_dssp CTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG--GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEE
T ss_pred CCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH--hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEE
Confidence 9999999999999888777788889999999999987 77775 3677888888888888888765 46778888888
Q ss_pred ECcCCCCCc
Q psy5670 323 DLSNNELTE 331 (1269)
Q Consensus 323 ~L~~n~l~~ 331 (1269)
++++|++.+
T Consensus 187 ~l~~N~i~~ 195 (197)
T 4ezg_A 187 YAFSQTIGG 195 (197)
T ss_dssp EECBC----
T ss_pred EeeCcccCC
Confidence 888887654
No 141
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.54 E-value=6.7e-13 Score=155.96 Aligned_cols=301 Identities=15% Similarity=0.245 Sum_probs=157.3
Q ss_pred hccCCcccceeEeccccCCCCChhhccCCccCceeecccccCCCCccceeccchhhhhcCCCCCEEEccCCCCccCCccc
Q psy5670 107 SFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHNVFTDELQSLESLDLSMNSIWTLPDAI 186 (1269)
Q Consensus 107 ~f~~l~~L~~L~L~~~~i~~i~~~~f~~l~~L~~L~L~~~~~~~~~~~~~i~~~~f~~~l~~L~~L~Ls~n~l~~l~~~~ 186 (1269)
.|....+|+.+.+.. .++.|+..+|.+|.+|+.+.|. .....+...+| .++ +|+.+.+.. .+..++..+
T Consensus 41 ~~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp-------~~v~~Ig~~aF-~~c-~l~~i~~~~-~l~~I~~~a 109 (379)
T 4h09_A 41 WYKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVA-------STVTSIGDGAF-ADT-KLQSYTGME-RVKKFGDYV 109 (379)
T ss_dssp TGGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEEC-------TTCCEECTTTT-TTC-CCCEEEECT-TCCEECTTT
T ss_pred ccccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeC-------CcceEechhhh-cCC-CCceEECCc-eeeEeccce
Confidence 466677788888864 4777888888888888888873 22346677777 776 677777764 377777777
Q ss_pred CCCCCCCcEEECCCCCCCCCCccccCCCCcccCCCcccEEEcCCCCCCccCcccCCCCCCCCEEEccCCCCcccchhhhc
Q psy5670 187 FCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALD 266 (1269)
Q Consensus 187 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 266 (1269)
|..+ +|+.+.+..+ +..+....|.+ .+|+.+.+.. .++.+...+|.++.+++.+.+..+.........+.
T Consensus 110 F~~~-~L~~i~lp~~-~~~i~~~~F~~-------~~l~~~~~~~-~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~ 179 (379)
T 4h09_A 110 FQGT-DLDDFEFPGA-TTEIGNYIFYN-------SSVKRIVIPK-SVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVL 179 (379)
T ss_dssp TTTC-CCSEEECCTT-CCEECTTTTTT-------CCCCEEEECT-TCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEE
T ss_pred eccC-CcccccCCCc-ccccccccccc-------ceeeeeeccc-eeeccccchhcccccccccccccccceeeccccee
Confidence 7665 6888888654 44444445532 2466665553 36666666777777777777665443221111000
Q ss_pred CCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCCcccccCcccccCCCCCCEEECcCCCCCccccCcccccCCCCcc
Q psy5670 267 GLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLV 346 (1269)
Q Consensus 267 ~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~ 346 (1269)
. +. .......|..+..+..+.+... ...+....+..+.+|+.+.+..+ +.. +...+|.++..|+
T Consensus 180 ~-----------~~-~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~f~~~~~l~~i~~~~~-~~~--i~~~~f~~~~~L~ 243 (379)
T 4h09_A 180 Y-----------NK-NKTILESYPAAKTGTEFTIPST-VKTVTAYGFSYGKNLKKITITSG-VTT--LGDGAFYGMKALD 243 (379)
T ss_dssp E-----------ET-TSSEEEECCTTCCCSEEECCTT-CCEECTTTTTTCSSCSEEECCTT-CCE--ECTTTTTTCSSCC
T ss_pred c-----------cc-ccceeccccccccccccccccc-eeEEeecccccccccceeeeccc-eeE--EccccccCCccce
Confidence 0 00 0000111222333333333221 22222333444444444444332 111 2334444445555
Q ss_pred EEEcCCCCCcccCchhhcCCCCCcEEEccCCcccccccccccCCCCCcEEEccCCcccccCcccccCCCCCCEEEccCCC
Q psy5670 347 VLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNE 426 (1269)
Q Consensus 347 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 426 (1269)
.+.+..+ ++.+....|.++.+|+.+.+.. .+..++..+|.++.+|+.+.+.++.++.+...+|.++.+|+.+.|.. .
T Consensus 244 ~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~-~ 320 (379)
T 4h09_A 244 EIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPT-A 320 (379)
T ss_dssp EEEECTT-CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCT-T
T ss_pred EEEcCCC-ccEeCccccceeehhccccccc-cceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCc-c
Confidence 5554433 4444444455555555555432 24444444555555555555555555555555555555555555543 2
Q ss_pred CCccChhhhcCCCCCcEEEcc
Q psy5670 427 LEYIEENALKNSTSLQDFHLN 447 (1269)
Q Consensus 427 i~~~~~~~~~~l~~L~~L~Ls 447 (1269)
+..+...+|.+|++|+.+.+.
T Consensus 321 l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 321 LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp CCEECTTTTTTCTTCCCCCCC
T ss_pred ccEEHHHHhhCCCCCCEEEEC
Confidence 444555555555555555554
No 142
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.50 E-value=1.2e-12 Score=153.78 Aligned_cols=337 Identities=14% Similarity=0.210 Sum_probs=160.2
Q ss_pred ccCCccCceeecccccCCCCccceeccchhhhhcCCCCCEEEccCCCCccCCcccCCCCCCCcEEECCCCCCCCCCcccc
Q psy5670 132 FRGLRKLKTLTLRTHNTDWSTMSLDISHNVFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSF 211 (1269)
Q Consensus 132 f~~l~~L~~L~L~~~~~~~~~~~~~i~~~~f~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 211 (1269)
|....+|+.+.+ +.....+...+| .++.+|+.++|+.+ ++.|+..+|.++ +|+.+.+.. .+..+...+|
T Consensus 42 ~~~~~~i~~v~i-------p~~vt~Ig~~aF-~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~-~l~~I~~~aF 110 (379)
T 4h09_A 42 YKDRDRISEVRV-------NSGITSIGEANF-NSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGME-RVKKFGDYVF 110 (379)
T ss_dssp GGGGGGCSEEEE-------CTTEEEECTTTT-TTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECT-TCCEECTTTT
T ss_pred cccccCCEEEEe-------CCCccChHHHHh-hCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCc-eeeEecccee
Confidence 556677777777 333456677777 77777777777643 677777777766 566665543 2444444444
Q ss_pred CCCCcccCCCcccEEEcCCCCCCccCcccCCCCCCCCEEEccCCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccC
Q psy5670 212 SNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQ 291 (1269)
Q Consensus 212 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~ 291 (1269)
.. .+|+.+.+..+ ++.+...+|.++ +|+.+.+.. .++.+...+|.++..++.+.+..+.........+.
T Consensus 111 ~~-------~~L~~i~lp~~-~~~i~~~~F~~~-~l~~~~~~~-~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~- 179 (379)
T 4h09_A 111 QG-------TDLDDFEFPGA-TTEIGNYIFYNS-SVKRIVIPK-SVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVL- 179 (379)
T ss_dssp TT-------CCCSEEECCTT-CCEECTTTTTTC-CCCEEEECT-TCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEE-
T ss_pred cc-------CCcccccCCCc-cccccccccccc-eeeeeeccc-eeeccccchhcccccccccccccccceeeccccee-
Confidence 32 24555555432 344444444443 344433332 23333334444444444444433221111100000
Q ss_pred CCCCcEEEeeCCcccccCcccccCCCCCCEEECcCCCCCccccCcccccCCCCccEEEcCCCCCcccCchhhcCCCCCcE
Q psy5670 292 SRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQV 371 (1269)
Q Consensus 292 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 371 (1269)
. +. .......+.....+..+.+...... +....+..+.+|+.+.+..+
T Consensus 180 --------~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~---i~~~~f~~~~~l~~i~~~~~------------------ 227 (379)
T 4h09_A 180 --------Y--NK-NKTILESYPAAKTGTEFTIPSTVKT---VTAYGFSYGKNLKKITITSG------------------ 227 (379)
T ss_dssp --------E--ET-TSSEEEECCTTCCCSEEECCTTCCE---ECTTTTTTCSSCSEEECCTT------------------
T ss_pred --------c--cc-ccceeccccccccccccccccceeE---Eeecccccccccceeeeccc------------------
Confidence 0 00 0000111233334444443332111 22333444444554444322
Q ss_pred EEccCCcccccccccccCCCCCcEEEccCCcccccCcccccCCCCCCEEEccCCCCCccChhhhcCCCCCcEEEccCCCC
Q psy5670 372 LHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKL 451 (1269)
Q Consensus 372 L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l 451 (1269)
+..+...+|.++..|+.+.+..+ ++.+...+|.++.+|+.+.+.. .+..+...+|.+|++|+.+.+.++.+
T Consensus 228 -------~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i 298 (379)
T 4h09_A 228 -------VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLTKVVMDNSAI 298 (379)
T ss_dssp -------CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTCCEEEECCTTC
T ss_pred -------eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccc-cceecccccccccccccccccccccc
Confidence 33344444444445555444332 4444444455555555555542 24444455555555555555555555
Q ss_pred CCchh-hhcCCCCCcEEECCCCCCCccChhhhhccccCCeeeccCCcCCCCChhhhcCCCCCCEEEcCCCcccccccccc
Q psy5670 452 TEIPK-VLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTF 530 (1269)
Q Consensus 452 ~~lp~-~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~ 530 (1269)
+.++. +|.++.+|+.+.|..+ ++.+...+|.+|.+|+++.+..+ +..|...+|.++..++ +.. .+..+....|
T Consensus 299 ~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~~~-~~~---~~~~~~~~~f 372 (379)
T 4h09_A 299 ETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSSITK-YPT---WLSKGNNGDY 372 (379)
T ss_dssp CEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSSCCC-CCT---TCEECTTSCE
T ss_pred ceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCCCCc-Ccc---ccccCceeeh
Confidence 55543 4555566666666433 55666667777777777777543 6667777777765433 211 1223333455
Q ss_pred CCCCCcc
Q psy5670 531 DNNSNLV 537 (1269)
Q Consensus 531 ~~~~~L~ 537 (1269)
..+.+||
T Consensus 373 ~~~~~Lk 379 (379)
T 4h09_A 373 GIFTKIK 379 (379)
T ss_dssp EC-----
T ss_pred hhhhhcC
Confidence 5555553
No 143
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.49 E-value=7.2e-16 Score=189.42 Aligned_cols=120 Identities=26% Similarity=0.358 Sum_probs=75.9
Q ss_pred CCcEEEccCCCCCCchhhhcCCCCCcEEECCCCCCCccChhhhhccccCCeeeccCCcCCCCChhhhcCCCCCCEEEcCC
Q psy5670 440 SLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLAS 519 (1269)
Q Consensus 440 ~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~ 519 (1269)
.|+.|++++|.++.+|. +..+++|+.|++++|.++.++ ..+..+++|+.|+|++|.++.+| .|.++++|+.|+|++
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp-~~~~~l~~L~~L~Ls~N~l~~lp--~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALP-PALAALRCLEVLQASDNALENVD--GVANLPRLQELLLCN 517 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCC-GGGGGCTTCCEEECCSSCCCCCG--GGTTCSSCCEEECCS
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccc-hhhhcCCCCCEEECCCCCCCCCc--ccCCCCCCcEEECCC
Confidence 46666666666666665 666666666666666666443 35666666666666666666655 366666677777777
Q ss_pred Ccccccc-ccccCCCCCccEEEcccccccccCCcCC----CCCCCcEEE
Q psy5670 520 NKIQKVE-AGTFDNNSNLVAIRLDGNYLTDIGGLFP----KLPNLVWLN 563 (1269)
Q Consensus 520 n~i~~~~-~~~~~~~~~L~~L~L~~n~l~~l~~~~~----~l~~L~~L~ 563 (1269)
|+++++. +..+..+++|+.|+|++|.++++|+... .+++|+.|+
T Consensus 518 N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 518 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp SCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 7666665 5666666667777777666666554322 245555554
No 144
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.46 E-value=1.4e-15 Score=186.85 Aligned_cols=204 Identities=19% Similarity=0.261 Sum_probs=138.1
Q ss_pred cCCCCCCEEECcCCCCCccccCcccccCCCCccEEEcCCCC-------------CcccCchhhcCCCCCcEEE-ccCCcc
Q psy5670 314 NVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNK-------------MNKLDSSIFKDLYRLQVLH-LENNQI 379 (1269)
Q Consensus 314 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~-------------l~~~~~~~~~~l~~L~~L~-Ls~n~l 379 (1269)
..+++|+.|+|++|.+.. + +..++.+++|+.|++++|. ..+..+..+..+++|+.|+ ++.|.+
T Consensus 346 ~~~~~L~~L~Ls~n~L~~--L-p~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~ 422 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTV--L-QSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL 422 (567)
T ss_dssp STTTTSSSCCCCHHHHHH--H-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH
T ss_pred ccCccceeccCChhhHHh--h-HHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc
Confidence 445666666666666653 2 4555666666666665442 2222233333334444443 222221
Q ss_pred cccccccccCCCCCcEEEccCCcccccCcccccCCCCCCEEEccCCCCCccChhhhcCCCCCcEEEccCCCCCCchhhhc
Q psy5670 380 ESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLR 459 (1269)
Q Consensus 380 ~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~ 459 (1269)
. +|+.+.+++|.++.+.+ ..|+.|+|++|.+++++. ++.+++|+.|+|++|.++.+|..+.
T Consensus 423 ~-----------~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~lp~--~~~l~~L~~L~Ls~N~l~~lp~~~~ 483 (567)
T 1dce_A 423 D-----------DLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPPALA 483 (567)
T ss_dssp H-----------HHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSSCCC--GGGGTTCCEEECCSSCCCCCCGGGG
T ss_pred c-----------hhhhhhhhcccccccCc------cCceEEEecCCCCCCCcC--ccccccCcEeecCcccccccchhhh
Confidence 1 12222233334433322 248889999998888753 8888999999999999999998889
Q ss_pred CCCCCcEEECCCCCCCccChhhhhccccCCeeeccCCcCCCCC-hhhhcCCCCCCEEEcCCCccccccccc---cCCCCC
Q psy5670 460 NLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNIS-KGVFEKLSVLTILNLASNKIQKVEAGT---FDNNSN 535 (1269)
Q Consensus 460 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~i~-~~~f~~l~~L~~L~Ls~n~i~~~~~~~---~~~~~~ 535 (1269)
.+++|++|+|++|.+++++ .+..+++|+.|+|++|.++.+. +..|..+++|+.|+|++|+++++++.. +..+++
T Consensus 484 ~l~~L~~L~Ls~N~l~~lp--~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~ 561 (567)
T 1dce_A 484 ALRCLEVLQASDNALENVD--GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPS 561 (567)
T ss_dssp GCTTCCEEECCSSCCCCCG--GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTT
T ss_pred cCCCCCEEECCCCCCCCCc--ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcc
Confidence 9999999999999998864 6888999999999999998875 566888999999999999998876532 234778
Q ss_pred ccEEEc
Q psy5670 536 LVAIRL 541 (1269)
Q Consensus 536 L~~L~L 541 (1269)
|+.|++
T Consensus 562 L~~L~l 567 (567)
T 1dce_A 562 VSSILT 567 (567)
T ss_dssp CSEEEC
T ss_pred cCccCC
Confidence 888864
No 145
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.46 E-value=5.8e-14 Score=144.24 Aligned_cols=134 Identities=25% Similarity=0.209 Sum_probs=119.7
Q ss_pred CCCCCCCCcEEEecCCCCC--CcCCCcCCCCCCccEEEccCcCccccccccccCCCCCCEEeCCCCCCcccCcccccCCc
Q psy5670 798 PPRIPMDATELYLDGNRIP--VVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLE 875 (1269)
Q Consensus 798 p~~~p~~~~~l~l~~n~i~--~l~~~~f~~~~~L~~L~l~~n~i~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~ 875 (1269)
+...|..+++|++++|.++ .++. .|.++++|+.|++++|.|+.+ ..|..+++|+.|+|++|+++...+..|.+++
T Consensus 19 ~~~~~~~L~~L~l~~n~l~~~~i~~-~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 95 (168)
T 2ell_A 19 RNRTPAAVRELVLDNCKSNDGKIEG-LTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLP 95 (168)
T ss_dssp TTSCTTSCSEEECCSCBCBTTBCSS-CCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCT
T ss_pred ccCCcccCCEEECCCCCCChhhHHH-HHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCC
Confidence 4556678899999999998 7764 478899999999999999998 7899999999999999999997777888899
Q ss_pred ccCeeecccccCcccCh-hhhhcCcccceEeccCccceeeec---c-c-ccCCccEEEeeCCccc
Q psy5670 876 NLRELYLQYNKIIYISN-RTFLSLTHLKVLQLDHNRITSFAV---W-H-LSSQIQSITLTSNPWS 934 (1269)
Q Consensus 876 ~L~~L~L~~N~l~~i~~-~~f~~l~~L~~L~L~~N~l~~~~~---~-~-~~~~l~~l~l~~Np~~ 934 (1269)
+|++|+|++|+|+.++. ..|..+++|++|+|++|+++.+++ . + .+++|+.|++++|+..
T Consensus 96 ~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 96 NLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp TCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred CCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 99999999999999875 788999999999999999999988 3 4 7899999999998764
No 146
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.45 E-value=3.7e-13 Score=138.68 Aligned_cols=117 Identities=30% Similarity=0.543 Sum_probs=65.5
Q ss_pred cCCCCCCceecCCCCCcceeeecCCCCccccCCCCCCCCCcEEEecCCCCCCcCCCcCCCCCCccEEEccCcCccccccc
Q psy5670 766 EMTCPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNK 845 (1269)
Q Consensus 766 ~~~cp~~C~c~~~~~~~~~~v~c~~~~l~~~~p~~~p~~~~~l~l~~n~i~~l~~~~f~~~~~L~~L~l~~n~i~~i~~~ 845 (1269)
...||..|+|. ...++|++.+++.+ |..+|..++.|+|++|+|+.+++..|.++++|+.|+|++|+|+.+++.
T Consensus 3 ~~~CP~~C~C~------~~~l~~~~n~l~~i-P~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~ 75 (174)
T 2r9u_A 3 SAGCPSQCSCD------QTLVNCQNIRLASV-PAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTG 75 (174)
T ss_dssp CCSSCTTSEEC------SSEEECCSSCCSSC-CSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred CCCCCCCCEEC------CcEEEeCCCCCCcc-CCCcCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChh
Confidence 35799999993 35677777777766 666666556666655555555555555555555555444444444444
Q ss_pred cccCCCCCCEEeCCCCCCcccCcccccCCcccCeeecccccCcc
Q psy5670 846 TFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIY 889 (1269)
Q Consensus 846 ~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~ 889 (1269)
.|.++++|+.|+|++|+|+.+++..|.++++|+.|+|++|.+..
T Consensus 76 ~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 76 VFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred HhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCccc
Confidence 44444444444444444444444444444444444444444443
No 147
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.42 E-value=2.4e-13 Score=140.71 Aligned_cols=128 Identities=21% Similarity=0.308 Sum_probs=109.1
Q ss_pred CCCcEEEecCCCCCCcCCCcCCCCC-CccEEEccCcCccccccccccCCCCCCEEeCCCCCCcccCcccccCCcccCeee
Q psy5670 803 MDATELYLDGNRIPVVGSHSFIGRK-KLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELY 881 (1269)
Q Consensus 803 ~~~~~l~l~~n~i~~l~~~~f~~~~-~L~~L~l~~n~i~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~ 881 (1269)
..+++|++++|.++.++. +..+. +|+.|++++|+|+.+ ..|..+++|+.|+|++|+|+.+++..|.++++|++|+
T Consensus 19 ~~L~~L~l~~n~l~~i~~--~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 94 (176)
T 1a9n_A 19 VRDRELDLRGYKIPVIEN--LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI 94 (176)
T ss_dssp TSCEEEECTTSCCCSCCC--GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred CCceEEEeeCCCCchhHH--hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEE
Confidence 456889999999998853 44444 899999999999988 6788999999999999999999888889999999999
Q ss_pred cccccCcccCh-hhhhcCcccceEeccCccceeeecc----c-ccCCccEEEeeCCccc
Q psy5670 882 LQYNKIIYISN-RTFLSLTHLKVLQLDHNRITSFAVW----H-LSSQIQSITLTSNPWS 934 (1269)
Q Consensus 882 L~~N~l~~i~~-~~f~~l~~L~~L~L~~N~l~~~~~~----~-~~~~l~~l~l~~Np~~ 934 (1269)
|++|+|+.++. ..|..+++|+.|+|++|.++.++.. + .+++|+.|++++|+..
T Consensus 95 L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 95 LTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 99999988886 5788899999999999999988774 3 6788999999888754
No 148
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.41 E-value=6.4e-13 Score=136.40 Aligned_cols=129 Identities=24% Similarity=0.315 Sum_probs=51.1
Q ss_pred CCcEEEccCCccc-ccCcccccCCCCCCEEEccCCCCCccChhhhcCCCCCcEEEccCCCCCC-chhhhcCCCCCcEEEC
Q psy5670 392 NLHTLIMSNNKLK-RIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTE-IPKVLRNLHSLKTLDL 469 (1269)
Q Consensus 392 ~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~L~L 469 (1269)
+|+.|++++|.++ +..+..+..+++|+.|++++|.+..+ ..+..+++|++|++++|.++. +|..+..+++|++|++
T Consensus 25 ~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 25 AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp SCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred cCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 3444444444443 12222233444444444444444433 233444444444444444443 3333333444444444
Q ss_pred CCCCCCccCh-hhhhccccCCeeeccCCcCCCCCh---hhhcCCCCCCEEEcCCCcc
Q psy5670 470 GDNLITEINN-LSLNSLHQLAGLRLTENNISNISK---GVFEKLSVLTILNLASNKI 522 (1269)
Q Consensus 470 s~n~i~~~~~-~~~~~l~~L~~L~Ls~n~l~~i~~---~~f~~l~~L~~L~Ls~n~i 522 (1269)
++|.++++.. ..+..+++|+.|++++|.+..++. ..|..+++|+.|++++|.+
T Consensus 103 s~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 103 SGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp BSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred cCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 4444443321 233333334444444443333332 2333444444444444433
No 149
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.41 E-value=1.1e-13 Score=175.61 Aligned_cols=190 Identities=19% Similarity=0.144 Sum_probs=97.9
Q ss_pred EccCCCCCCchhhhcCCCCCcEEECCCCCCCccChhhhhccccCCeeeccCCcCCCCChhhhcCCCCCCEEEcCCCcccc
Q psy5670 445 HLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQK 524 (1269)
Q Consensus 445 ~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~ 524 (1269)
++..|.+...|..+..++.|+.|+|++|.+..++.. +..+++|+.|+|++|.++.+|. .|.++++|++|+|++|+|+.
T Consensus 207 ~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~-~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~Ls~N~l~~ 284 (727)
T 4b8c_D 207 DDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISAN-IFKYDFLTRLYLNGNSLTELPA-EIKNLSNLRVLDLSHNRLTS 284 (727)
T ss_dssp ---------------CCCCCCEEECTTSCCSCCCGG-GGGCCSCSCCBCTTSCCSCCCG-GGGGGTTCCEEECTTSCCSS
T ss_pred cccccceecChhhhccCCCCcEEECCCCCCCCCChh-hcCCCCCCEEEeeCCcCcccCh-hhhCCCCCCEEeCcCCcCCc
Confidence 344455555556677778888888888888766554 3477888888888888887774 46788888888888888885
Q ss_pred ccccccCCCCCccEEEcccccccccCCcCCCCCCCcEEEccCCcCccccccccCCCccEEECCCCCcccccccccccccc
Q psy5670 525 VEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQL 604 (1269)
Q Consensus 525 ~~~~~~~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~lp~~L~~L~Ls~n~l~~~~~~~~l~~~~ 604 (1269)
+ +..|..+++|+.|+|++|.++.+|..|..+++|+.|+|++|.++... |..+ ... ..
T Consensus 285 l-p~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~----p~~~-----------------~~~-~~ 341 (727)
T 4b8c_D 285 L-PAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQF----LKIL-----------------TEK-SV 341 (727)
T ss_dssp C-CSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHH----HHHH-----------------HHH-HH
T ss_pred c-ChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCC----hHHH-----------------hhc-ch
Confidence 5 56677888888888888888888877888888888888888776321 1100 000 01
Q ss_pred cccEEEcCCCccccccCCcccCCccEEEccCc--------ccccccCCccCCCCCccEEEcCCCCcc
Q psy5670 605 RLTYFDASSNKLTELTGNAIPHSVENLFLTNN--------LISKVQPYTFFMKPNLTRVDLVGNRLK 663 (1269)
Q Consensus 605 ~L~~LdLs~N~l~~~~~~~~~~~L~~L~Ls~N--------~i~~~~~~~f~~~~~L~~LdLs~N~l~ 663 (1269)
.+..++|++|.+++ .+|..|+.|++++| .+.+..+..+..+..+....++.|-+.
T Consensus 342 ~~~~l~l~~N~l~~----~~p~~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 342 TGLIFYLRDNRPEI----PLPHERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp HHHHHHHHHCCCCC----CCCCC-----------------------------------------CCC
T ss_pred hhhHHhhccCcccC----cCccccceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 12235666666654 34456666777666 233333334444555555555665543
No 150
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.40 E-value=2.3e-12 Score=133.45 Aligned_cols=107 Identities=35% Similarity=0.520 Sum_probs=45.7
Q ss_pred ccEEEcCCCCCCccCcccCCCCCCCCEEEccCCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeC
Q psy5670 223 LRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQN 302 (1269)
Q Consensus 223 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~ 302 (1269)
|++|++++|.++.+++..|.++++|++|++++|.++.+.+..|.++++|++|++++|+++.+++..|..+++|++|++++
T Consensus 30 l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 109 (177)
T 2o6r_A 30 ATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDT 109 (177)
T ss_dssp CSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcC
Confidence 33334444433333333334444444444444444444333344444444444444444444444444444444444444
Q ss_pred CcccccCcccccCCCCCCEEECcCCCC
Q psy5670 303 NSINVLAPGIFNVLTQLIVLDLSNNEL 329 (1269)
Q Consensus 303 n~l~~~~~~~~~~l~~L~~L~L~~n~l 329 (1269)
|.++++++..|..+++|+.|++++|.+
T Consensus 110 N~l~~~~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 110 NQLKSVPDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CcceEeCHHHhcCCcccCEEEecCCCe
Confidence 444444443344444444444444443
No 151
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=99.39 E-value=6.1e-13 Score=128.82 Aligned_cols=49 Identities=22% Similarity=0.612 Sum_probs=38.3
Q ss_pred cEEEeeCCcccccCCcHHHHHHHHHhccCCcCccCcceeccCCccceeeee
Q psy5670 924 QSITLTSNPWSCDCDFTEKFRDYLQRSRSSVHDISQIRCMTGSEVGFTIMR 974 (1269)
Q Consensus 924 ~~l~l~~Np~~C~C~~~~~~~~w~~~~~~~i~~~~~~~C~~p~~~~~~~~~ 974 (1269)
+.|+|++|||.|||++ .||+.|++.....+ ...+++|.+|...+|..+.
T Consensus 58 ~~L~L~~NP~~CdC~l-~~l~~wl~~~~~~~-~~~~~~C~~P~~l~g~~l~ 106 (130)
T 3rfe_A 58 RTAHLGANPWRCDCRL-VPLRAWLAGRPERA-PYRDLRCVAPPALRGRLLP 106 (130)
T ss_dssp CEEECCSSCCBCSGGG-HHHHHHHHTSSCSG-GGTTCBCCBSTTTTTCBGG
T ss_pred CEEEecCCCeeccCcc-HHHHHHHHhCcccc-cccCcEeCcChHHcCCCcc
Confidence 4478889999999996 79999998765444 3568999999998774443
No 152
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.38 E-value=1.7e-13 Score=173.92 Aligned_cols=154 Identities=22% Similarity=0.219 Sum_probs=104.2
Q ss_pred cCchhhcCCCCCcEEEccCCcccccccccccCCCCCcEEEccCCcccccCcccccCCCCCCEEEccCCCCCccChhhhcC
Q psy5670 358 LDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKN 437 (1269)
Q Consensus 358 ~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~ 437 (1269)
+++..|..++.|+.|+|++|.+..++...+ .+++|+.|+|++|.++.+ +..+.++++|+.|+|++|.++.+ |..|++
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~-~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~ 291 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIFNISANIF-KYDFLTRLYLNGNSLTEL-PAEIKNLSNLRVLDLSHNRLTSL-PAELGS 291 (727)
T ss_dssp -------CCCCCCEEECTTSCCSCCCGGGG-GCCSCSCCBCTTSCCSCC-CGGGGGGTTCCEEECTTSCCSSC-CSSGGG
T ss_pred cChhhhccCCCCcEEECCCCCCCCCChhhc-CCCCCCEEEeeCCcCccc-ChhhhCCCCCCEEeCcCCcCCcc-ChhhcC
Confidence 445567777888888888888887776554 678888888888888744 45678888888888888888855 556788
Q ss_pred CCCCcEEEccCCCCCCchhhhcCCCCCcEEECCCCCCCccChhhhhcccc-CCeeeccCCcCCCCChhhhcCCCCCCEEE
Q psy5670 438 STSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQ-LAGLRLTENNISNISKGVFEKLSVLTILN 516 (1269)
Q Consensus 438 l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~-L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~ 516 (1269)
+++|++|+|++|.++.+|..|..+++|++|+|++|.+++..+..+..+.. +..++|++|.+.... ...|+.|+
T Consensus 292 l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~------p~~l~~l~ 365 (727)
T 4b8c_D 292 CFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPL------PHERRFIE 365 (727)
T ss_dssp GTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCC------CCC-----
T ss_pred CCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcC------ccccceeE
Confidence 88888888888888888888888888889999988888877776654432 234677777773222 23456666
Q ss_pred cCCC
Q psy5670 517 LASN 520 (1269)
Q Consensus 517 Ls~n 520 (1269)
++.|
T Consensus 366 l~~n 369 (727)
T 4b8c_D 366 INTD 369 (727)
T ss_dssp ----
T ss_pred eecc
Confidence 6665
No 153
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.37 E-value=1.7e-12 Score=133.26 Aligned_cols=118 Identities=28% Similarity=0.501 Sum_probs=110.4
Q ss_pred CCCCCceecCCCCCcceeeecCCCCccccCCCCCCCCCcEEEecCCCCCCcCCCcCCCCCCccEEEccCcCccccccccc
Q psy5670 768 TCPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTF 847 (1269)
Q Consensus 768 ~cp~~C~c~~~~~~~~~~v~c~~~~l~~~~p~~~p~~~~~l~l~~n~i~~l~~~~f~~~~~L~~L~l~~n~i~~i~~~~f 847 (1269)
.||..|.|. ...++|++.+++.+ |..++..++.|+|++|.|+.+++..|.++++|+.|+|++|+|+.+++..|
T Consensus 2 ~CP~~C~C~------~~~l~~s~n~l~~i-p~~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f 74 (170)
T 3g39_A 2 ACPSQCSCS------GTTVDCSGKSLASV-PTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVF 74 (170)
T ss_dssp CCC-CCEEE------TTEEECTTSCCSSC-CSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTT
T ss_pred cCcCcCCcC------CCEEEeCCCCcCcc-CccCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhc
Confidence 599999994 35799999999998 99999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCEEeCCCCCCcccCcccccCCcccCeeecccccCcccCh
Q psy5670 848 NGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISN 892 (1269)
Q Consensus 848 ~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~i~~ 892 (1269)
.++++|++|+|++|+|+.+++..|.++++|++|+|++|.++...+
T Consensus 75 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 75 DKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred cCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 999999999999999999999999999999999999999886653
No 154
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.37 E-value=1.5e-12 Score=130.53 Aligned_cols=126 Identities=25% Similarity=0.347 Sum_probs=56.1
Q ss_pred CCCcEEEccCCccc-ccCcccccCCCCCCEEEccCCCCCccChhhhcCCCCCcEEEccCCCCCC-chhhhcCCCCCcEEE
Q psy5670 391 SNLHTLIMSNNKLK-RIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTE-IPKVLRNLHSLKTLD 468 (1269)
Q Consensus 391 ~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~L~ 468 (1269)
++|+.|++++|.++ +..+..+..+++|+.|++++|.+.++ ..+..+++|++|++++|.++. +|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 33444444444444 22223334444444444444444444 334444444444444444444 444444444455555
Q ss_pred CCCCCCCccC-hhhhhccccCCeeeccCCcCCCCCh---hhhcCCCCCCEEEcC
Q psy5670 469 LGDNLITEIN-NLSLNSLHQLAGLRLTENNISNISK---GVFEKLSVLTILNLA 518 (1269)
Q Consensus 469 Ls~n~i~~~~-~~~~~~l~~L~~L~Ls~n~l~~i~~---~~f~~l~~L~~L~Ls 518 (1269)
+++|.++++. +..+..+++|+.|++++|.++.++. ..|..+++|+.|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 5555444432 1334444444444444444444433 334444555554443
No 155
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.35 E-value=2.6e-12 Score=128.86 Aligned_cols=126 Identities=26% Similarity=0.330 Sum_probs=96.7
Q ss_pred CCCcEEEccCCccc--ccccccccCCCCCcEEEccCCcccccCcccccCCCCCCEEEccCCCCCccChhhhcCCCCCcEE
Q psy5670 367 YRLQVLHLENNQIE--SIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDF 444 (1269)
Q Consensus 367 ~~L~~L~Ls~n~l~--~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 444 (1269)
++|+.|++++|.++ .++ ..+..+++|+.|++++|.++++ ..+..+++|+.|++++|.+.+..+..+..+++|++|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLE-GLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGCSEEECTTCBCBTTBCC-SCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred ccCeEEEccCCcCChhHHH-HHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 46677777777666 343 3556677777777777777766 557777888888888888887667777778888888
Q ss_pred EccCCCCCCch--hhhcCCCCCcEEECCCCCCCccCh---hhhhccccCCeeeccC
Q psy5670 445 HLNGNKLTEIP--KVLRNLHSLKTLDLGDNLITEINN---LSLNSLHQLAGLRLTE 495 (1269)
Q Consensus 445 ~Ls~n~l~~lp--~~l~~l~~L~~L~Ls~n~i~~~~~---~~~~~l~~L~~L~Ls~ 495 (1269)
++++|.++.+| ..+..+++|++|++++|.++++++ ..+..+++|+.|++++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 88888888765 678888889999999998888776 5778888898888763
No 156
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.32 E-value=3.8e-12 Score=131.61 Aligned_cols=131 Identities=23% Similarity=0.304 Sum_probs=64.9
Q ss_pred CCCCCcEEEccCCcccccccccccCCCCCcEEEccCCcccccCcccccCCCCCCEEEccCCCCCccChhhhcCCCCCcEE
Q psy5670 365 DLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDF 444 (1269)
Q Consensus 365 ~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 444 (1269)
++.+|++|++++|.++.++. .....++|+.|++++|.++++ ..+..+++|+.|++++|.+.++++..+..+++|++|
T Consensus 17 ~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp CTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred CcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence 34444555555554444421 111122555555555555544 244555555555555555555544444555556666
Q ss_pred EccCCCCCCchh--hhcCCCCCcEEECCCCCCCccChh---hhhccccCCeeeccCCcC
Q psy5670 445 HLNGNKLTEIPK--VLRNLHSLKTLDLGDNLITEINNL---SLNSLHQLAGLRLTENNI 498 (1269)
Q Consensus 445 ~Ls~n~l~~lp~--~l~~l~~L~~L~Ls~n~i~~~~~~---~~~~l~~L~~L~Ls~n~l 498 (1269)
++++|.++.+|. .+..+++|++|++++|.++.++.. .+..+++|+.|++++|.+
T Consensus 94 ~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 94 ILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp ECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred ECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 666665555554 455555555555555555544332 244444444444444443
No 157
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.22 E-value=1.7e-13 Score=144.96 Aligned_cols=114 Identities=25% Similarity=0.307 Sum_probs=78.3
Q ss_pred cccCCCCCCEEEccCCCCCccChhhhcCCCCCcEEEccCCCCCCchhhhcCCCCCcEEECCCCCCCccChhhhhccccCC
Q psy5670 410 SLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLA 489 (1269)
Q Consensus 410 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 489 (1269)
.+..+++|++|++++|.+.+++ .+..+++|+.|++++|.++.+|..+..+++|++|++++|.+++++ .+..+++|+
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~--~~~~l~~L~ 118 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS--GIEKLVNLR 118 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH--HHHHHHHSS
T ss_pred HHhcCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC--ccccCCCCC
Confidence 5566666777777777666654 566667777777777777777766666677777777777777653 466777777
Q ss_pred eeeccCCcCCCCCh-hhhcCCCCCCEEEcCCCccccccc
Q psy5670 490 GLRLTENNISNISK-GVFEKLSVLTILNLASNKIQKVEA 527 (1269)
Q Consensus 490 ~L~Ls~n~l~~i~~-~~f~~l~~L~~L~Ls~n~i~~~~~ 527 (1269)
.|++++|.+..++. ..+..+++|++|++++|++.+..+
T Consensus 119 ~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 157 (198)
T 1ds9_A 119 VLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYK 157 (198)
T ss_dssp EEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHH
T ss_pred EEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccc
Confidence 77777777766554 456777777777777777765533
No 158
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.14 E-value=1.4e-12 Score=137.81 Aligned_cols=130 Identities=26% Similarity=0.398 Sum_probs=113.0
Q ss_pred CCcEEEecCC--CCCCcCCCcCCCCCCccEEEccCcCccccccccccCCCCCCEEeCCCCCCcccCcccccCCcccCeee
Q psy5670 804 DATELYLDGN--RIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELY 881 (1269)
Q Consensus 804 ~~~~l~l~~n--~i~~l~~~~f~~~~~L~~L~l~~n~i~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~ 881 (1269)
++....+++. .++.++. .|.++++|++|++++|+|+.++ .|.++++|+.|+|++|.++.++. .+..+++|++|+
T Consensus 24 ~l~~~~l~~~~~~l~~l~~-~~~~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~l~~l~~-~~~~~~~L~~L~ 99 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDA-TLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKIEN-LDAVADTLEELW 99 (198)
T ss_dssp TCSEEECCBCCTTCCCCHH-HHHHTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEEECSCSS-HHHHHHHCSEEE
T ss_pred chheeEeccccCcHhhhhH-HHhcCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCCCcccccc-hhhcCCcCCEEE
Confidence 4456666653 5666664 7888999999999999999986 89999999999999999998875 677789999999
Q ss_pred cccccCcccChhhhhcCcccceEeccCccceeeec-c-c-ccCCccEEEeeCCcccccCCc
Q psy5670 882 LQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAV-W-H-LSSQIQSITLTSNPWSCDCDF 939 (1269)
Q Consensus 882 L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~-~-~-~~~~l~~l~l~~Np~~C~C~~ 939 (1269)
|++|+|+.++ .|..+++|++|+|++|+++.++. . + .+++|+.|++++|++.|.|+.
T Consensus 100 L~~N~l~~l~--~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~ 158 (198)
T 1ds9_A 100 ISYNQIASLS--GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE 158 (198)
T ss_dssp EEEEECCCHH--HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred CcCCcCCcCC--ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccccc
Confidence 9999999986 58899999999999999999876 3 5 789999999999999999864
No 159
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.09 E-value=1.5e-10 Score=134.05 Aligned_cols=113 Identities=21% Similarity=0.433 Sum_probs=94.0
Q ss_pred EECCCC-CcccccccccccccccccEEEcCC-CccccccCCccc--CCccEEEccCcccccccCCccCCCCCccEEEcCC
Q psy5670 584 LDIHGN-QISELGNYFEIESQLRLTYFDASS-NKLTELTGNAIP--HSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVG 659 (1269)
Q Consensus 584 L~Ls~n-~l~~~~~~~~l~~~~~L~~LdLs~-N~l~~~~~~~~~--~~L~~L~Ls~N~i~~~~~~~f~~~~~L~~LdLs~ 659 (1269)
++++++ .++.+|. +..+.+|+.|+|++ |+|+++++..+. .+|+.|+|++|+|+++.|..|.++++|+.|||++
T Consensus 13 v~~~~~n~l~~ip~---l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 13 LRCTRDGALDSLHH---LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp EECCSSCCCTTTTT---SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEcCCCCCCCccCC---CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 466665 6666665 45667899999996 999988865554 5899999999999999999999999999999999
Q ss_pred CCcccccccccccccCCCCCCCCceEecCCccccccCChhHHhhcc
Q psy5670 660 NRLKNINQTALRISPLPSHKNIPDFYIGENPFQCDCNMQWLQSYSV 705 (1269)
Q Consensus 660 N~l~~l~~~~~~~~~~~~~~~l~~l~l~~Np~~c~c~~~~l~~~~~ 705 (1269)
|+|++++...+.. ..|+.|++.+|++.|+|.+.|+..+..
T Consensus 90 N~l~~~~~~~~~~------~~L~~l~l~~N~~~c~c~l~~~~~~~~ 129 (347)
T 2ifg_A 90 NALESLSWKTVQG------LSLQELVLSGNPLHCSCALRWLQRWEE 129 (347)
T ss_dssp SCCSCCCSTTTCS------CCCCEEECCSSCCCCCGGGHHHHHHHH
T ss_pred CccceeCHHHccc------CCceEEEeeCCCccCCCccHHHHHHHH
Confidence 9999998876632 238899999999999999999987643
No 160
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.03 E-value=3.6e-11 Score=139.65 Aligned_cols=135 Identities=19% Similarity=0.184 Sum_probs=65.3
Q ss_pred CCCcEEEccCCcccccCcccc-cCCCCCCEEEccCCCCCccChhhh-----cCCCCCcEEEccCCCCCC-----chhhhc
Q psy5670 391 SNLHTLIMSNNKLKRIESNSL-DSLTALSVLSLDNNELEYIEENAL-----KNSTSLQDFHLNGNKLTE-----IPKVLR 459 (1269)
Q Consensus 391 ~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls~n~i~~~~~~~~-----~~l~~L~~L~Ls~n~l~~-----lp~~l~ 459 (1269)
++|+.|+|++|.++......+ ..+++|+.|+|++|.+.......+ ...++|++|+|++|.++. ++..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 355555555555443322111 123345555555555544333222 234556666666666542 333445
Q ss_pred CCCCCcEEECCCCCCCccC----hhhhhccccCCeeeccCCcCCCCChh----hhcCCCCCCEEEcCCCccccc
Q psy5670 460 NLHSLKTLDLGDNLITEIN----NLSLNSLHQLAGLRLTENNISNISKG----VFEKLSVLTILNLASNKIQKV 525 (1269)
Q Consensus 460 ~l~~L~~L~Ls~n~i~~~~----~~~~~~l~~L~~L~Ls~n~l~~i~~~----~f~~l~~L~~L~Ls~n~i~~~ 525 (1269)
.+++|++|+|++|.+++.. ...+...++|+.|+|++|.++..... .+...++|++|+|++|.|+..
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence 5566666666666665433 22333444555555555555432211 223345555555555555443
No 161
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.01 E-value=6.1e-11 Score=137.76 Aligned_cols=109 Identities=24% Similarity=0.240 Sum_probs=43.6
Q ss_pred CCcEEEccCCcccccccccc-----cCCCCCcEEEccCCcccccCcc----cccCCCCCCEEEccCCCCCccC----hhh
Q psy5670 368 RLQVLHLENNQIESIHRNTF-----ASLSNLHTLIMSNNKLKRIESN----SLDSLTALSVLSLDNNELEYIE----ENA 434 (1269)
Q Consensus 368 ~L~~L~Ls~n~l~~i~~~~f-----~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~Ls~n~i~~~~----~~~ 434 (1269)
+|++|+|++|.++......+ ...++|++|+|++|.++..... .+..+++|++|+|++|.+.... ...
T Consensus 127 ~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~ 206 (372)
T 3un9_A 127 RARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQ 206 (372)
T ss_dssp TEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHH
T ss_pred hccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHH
Confidence 44555555554443222222 1234455555555544432211 1233444444444444443322 122
Q ss_pred hcCCCCCcEEEccCCCCCC-----chhhhcCCCCCcEEECCCCCCCc
Q psy5670 435 LKNSTSLQDFHLNGNKLTE-----IPKVLRNLHSLKTLDLGDNLITE 476 (1269)
Q Consensus 435 ~~~l~~L~~L~Ls~n~l~~-----lp~~l~~l~~L~~L~Ls~n~i~~ 476 (1269)
+..+++|++|+|++|.++. ++..+...++|++|+|++|.|++
T Consensus 207 L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 207 LDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp GGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred HhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 3333444444444444442 12223333444444444444443
No 162
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.52 E-value=3.9e-08 Score=112.98 Aligned_cols=112 Identities=20% Similarity=0.250 Sum_probs=54.9
Q ss_pred hhhcCCCCCcEEEccCCCCCCchhhhcCCCCCcEEECCCCCCCccChhhhh--ccccCCeeeccC--CcC-CC-----CC
Q psy5670 433 NALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLN--SLHQLAGLRLTE--NNI-SN-----IS 502 (1269)
Q Consensus 433 ~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~--~l~~L~~L~Ls~--n~l-~~-----i~ 502 (1269)
..+..+++|+.|+|++|.-..++. + .+++|+.|+|..|.+.......+. .+++|+.|+|+. |.. .. +.
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~ 243 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR 243 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG
T ss_pred HHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHH
Confidence 345566677777776663223333 2 256777777776666543333333 566677776642 111 11 11
Q ss_pred hhhh--cCCCCCCEEEcCCCcccccccccc---CCCCCccEEEccccccc
Q psy5670 503 KGVF--EKLSVLTILNLASNKIQKVEAGTF---DNNSNLVAIRLDGNYLT 547 (1269)
Q Consensus 503 ~~~f--~~l~~L~~L~Ls~n~i~~~~~~~~---~~~~~L~~L~L~~n~l~ 547 (1269)
. .+ ..+++|+.|+|.+|.+.......+ ..+++|+.|+|+.|.++
T Consensus 244 ~-~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~ 292 (362)
T 2ra8_A 244 P-LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLT 292 (362)
T ss_dssp G-GSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCB
T ss_pred H-HHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCC
Confidence 1 11 235566666666666543211111 12345555555555544
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=98.49 E-value=1.8e-07 Score=90.28 Aligned_cols=102 Identities=24% Similarity=0.392 Sum_probs=63.7
Q ss_pred EEEcCCCccc--cccCCcccCCccEEEccCcccccccCCccCCCCCccEEEcCCCCcccccccccccccCCCCCCCCceE
Q psy5670 608 YFDASSNKLT--ELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHKNIPDFY 685 (1269)
Q Consensus 608 ~LdLs~N~l~--~~~~~~~~~~L~~L~Ls~N~i~~~~~~~f~~~~~L~~LdLs~N~l~~l~~~~~~~~~~~~~~~l~~l~ 685 (1269)
.++.++++++ .++. .+|.+|+.|+|++|+|+.+.+..|..+++ |+.++
T Consensus 12 ~v~Cs~~~L~~~~vP~-~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~-----------------------------L~~L~ 61 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPT-AFPVDTTELVLTGNNLTALPPGLLDALPA-----------------------------LRTAH 61 (130)
T ss_dssp EEECCSSCCCTTTSCS-CCCTTCSEEECTTSCCSSCCTTTGGGCTT-----------------------------CCEEE
T ss_pred EEEeCCCCCccccCCC-CCCcCCCEEECCCCcCCccChhhhhhccc-----------------------------cCEEE
Confidence 5666666665 4442 35555666666666555555555544444 45567
Q ss_pred ecCCccccccCChhHHhhccccccCCCcccccCccccccccccCCCcccccccCCCcccc
Q psy5670 686 IGENPFQCDCNMQWLQSYSVNKERNKPNLVDLDTVTCKLLYNRANPAILLKEAHSNQFLC 745 (1269)
Q Consensus 686 l~~Np~~c~c~~~~l~~~~~~~~~~~~~~~~l~~~~c~~~~~~~~~~~~l~~~~~~~~~~ 745 (1269)
+++|||.|||.+.||..+-.. .........+.|..+. ...+..+.++...+|.|
T Consensus 62 L~~NP~~CdC~l~~l~~wl~~----~~~~~~~~~~~C~~P~--~l~g~~l~~l~~~~l~c 115 (130)
T 3rfe_A 62 LGANPWRCDCRLVPLRAWLAG----RPERAPYRDLRCVAPP--ALRGRLLPYLAEDELRA 115 (130)
T ss_dssp CCSSCCBCSGGGHHHHHHHHT----SSCSGGGTTCBCCBST--TTTTCBGGGCCHHHHHH
T ss_pred ecCCCeeccCccHHHHHHHHh----CcccccccCcEeCcCh--HHcCCCcccCCHHHhhC
Confidence 778999999999999876431 1111234578897654 35667788887777764
No 164
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.45 E-value=2.1e-07 Score=106.97 Aligned_cols=82 Identities=15% Similarity=0.250 Sum_probs=37.9
Q ss_pred CCCCcEEEccCCCCCC-chhhh---cCCCCCcEEECCCCCCCccChh----hhhccccCCeeeccCCcCCCCChhhhcC-
Q psy5670 438 STSLQDFHLNGNKLTE-IPKVL---RNLHSLKTLDLGDNLITEINNL----SLNSLHQLAGLRLTENNISNISKGVFEK- 508 (1269)
Q Consensus 438 l~~L~~L~Ls~n~l~~-lp~~l---~~l~~L~~L~Ls~n~i~~~~~~----~~~~l~~L~~L~Ls~n~l~~i~~~~f~~- 508 (1269)
+++|+.|+|.+|.+.. .+..+ ..+++|++|+|+.|.+++.... .+..+++|+.|+|+.|.++.-....+..
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~a 330 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKS 330 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHH
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHH
Confidence 4455555555554432 11111 1345566666666655543221 2234556666666666554322222222
Q ss_pred CCCCCEEEcCCCc
Q psy5670 509 LSVLTILNLASNK 521 (1269)
Q Consensus 509 l~~L~~L~Ls~n~ 521 (1269)
+ ...++++.++
T Consensus 331 l--g~~~~~~~~~ 341 (362)
T 2ra8_A 331 L--PMKIDVSDSQ 341 (362)
T ss_dssp C--CSEEECCSBC
T ss_pred c--CCEEEecCCc
Confidence 1 2446666655
No 165
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.05 E-value=2.1e-06 Score=88.84 Aligned_cols=18 Identities=11% Similarity=0.117 Sum_probs=8.2
Q ss_pred hcCCCCCcEEECCCCCCC
Q psy5670 458 LRNLHSLKTLDLGDNLIT 475 (1269)
Q Consensus 458 l~~l~~L~~L~Ls~n~i~ 475 (1269)
+...++|++|+|++|.+.
T Consensus 61 L~~~~~L~~L~Ls~n~i~ 78 (185)
T 1io0_A 61 LKTNTYVKKFSIVGTRSN 78 (185)
T ss_dssp HTTCCSCCEEECTTSCCC
T ss_pred HHhCCCcCEEECcCCCCC
Confidence 333444444444444444
No 166
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.02 E-value=3.4e-06 Score=87.20 Aligned_cols=88 Identities=22% Similarity=0.336 Sum_probs=40.2
Q ss_pred cCCCCCcEEEccCCCCCC-----chhhhcCCCCCcEEECCCCCCCccCh----hhhhccccCCeeec--cCCcCCCCCh-
Q psy5670 436 KNSTSLQDFHLNGNKLTE-----IPKVLRNLHSLKTLDLGDNLITEINN----LSLNSLHQLAGLRL--TENNISNISK- 503 (1269)
Q Consensus 436 ~~l~~L~~L~Ls~n~l~~-----lp~~l~~l~~L~~L~Ls~n~i~~~~~----~~~~~l~~L~~L~L--s~n~l~~i~~- 503 (1269)
...++|++|+|++|.+.. +...+...++|++|+|++|.|++... ..+...+.|++|+| ++|.++.-..
T Consensus 62 ~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~ 141 (185)
T 1io0_A 62 KTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEM 141 (185)
T ss_dssp TTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHH
T ss_pred HhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHH
Confidence 334455555555555442 22334444555555555555554321 22233344555555 4444432211
Q ss_pred ---hhhcCCCCCCEEEcCCCccc
Q psy5670 504 ---GVFEKLSVLTILNLASNKIQ 523 (1269)
Q Consensus 504 ---~~f~~l~~L~~L~Ls~n~i~ 523 (1269)
..+...++|++|+|++|.+.
T Consensus 142 ~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 142 EIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHhCCCcCEEeccCCCCC
Confidence 12334455666666665543
No 167
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.80 E-value=1.4e-05 Score=86.86 Aligned_cols=65 Identities=28% Similarity=0.357 Sum_probs=38.5
Q ss_pred cCCCCCCEEeCCCCCCcccCc--ccccCCcccCeeecccccCcccCh-hhhhcCcccceEeccCcccee
Q psy5670 848 NGLKELIILRLDDNRLTEIRG--YEFERLENLRELYLQYNKIIYISN-RTFLSLTHLKVLQLDHNRITS 913 (1269)
Q Consensus 848 ~~l~~L~~L~L~~N~l~~i~~--~~f~~l~~L~~L~L~~N~l~~i~~-~~f~~l~~L~~L~L~~N~l~~ 913 (1269)
.++++|+.|+|++|+|+.+.+ ..+..+++|+.|+|++|+|+++.. ..+..+ +|+.|+|++|.++.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~ 234 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCD 234 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGG
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCcc
Confidence 456666666666666666553 344566666666666666666621 222222 66666777766653
No 168
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.76 E-value=3.2e-06 Score=91.89 Aligned_cols=91 Identities=18% Similarity=0.185 Sum_probs=67.1
Q ss_pred ccCCCCCCE--EeCCCCCCcccCc---ccccCCcccCeeecccccCcccCh--hhhhcCcccceEeccCccceeeecc--
Q psy5670 847 FNGLKELII--LRLDDNRLTEIRG---YEFERLENLRELYLQYNKIIYISN--RTFLSLTHLKVLQLDHNRITSFAVW-- 917 (1269)
Q Consensus 847 f~~l~~L~~--L~L~~N~l~~i~~---~~f~~l~~L~~L~L~~N~l~~i~~--~~f~~l~~L~~L~L~~N~l~~~~~~-- 917 (1269)
|...+.|.. ++++.|+...++. ....++++|++|+|++|+|++++. ..+..+++|+.|+|++|+|+++..-
T Consensus 137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~ 216 (267)
T 3rw6_A 137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDK 216 (267)
T ss_dssp GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGG
T ss_pred cCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhh
Confidence 444555555 6778886555432 233568899999999999999874 6677899999999999999988433
Q ss_pred c-ccCCccEEEeeCCcccccCC
Q psy5670 918 H-LSSQIQSITLTSNPWSCDCD 938 (1269)
Q Consensus 918 ~-~~~~l~~l~l~~Np~~C~C~ 938 (1269)
+ .+ +|+.|+|++||+.-..+
T Consensus 217 l~~l-~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 217 IKGL-KLEELWLDGNSLCDTFR 237 (267)
T ss_dssp GTTS-CCSEEECTTSTTGGGCS
T ss_pred cccC-CcceEEccCCcCccccC
Confidence 3 23 89999999999754443
No 169
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.42 E-value=4e-05 Score=77.05 Aligned_cols=33 Identities=12% Similarity=0.211 Sum_probs=15.1
Q ss_pred CCcEEEccCCCCCCch-hhhcCCCCCcEEECCCC
Q psy5670 440 SLQDFHLNGNKLTEIP-KVLRNLHSLKTLDLGDN 472 (1269)
Q Consensus 440 ~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~Ls~n 472 (1269)
.|++|++++|.++... ..+..+++|++|+|++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C 95 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKC 95 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCC
Confidence 4555555555544221 12344455555555554
No 170
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.35 E-value=0.0001 Score=74.13 Aligned_cols=34 Identities=15% Similarity=0.255 Sum_probs=14.9
Q ss_pred CCcEEEccCCcccccccccccCCCCCcEEEccCC
Q psy5670 368 RLQVLHLENNQIESIHRNTFASLSNLHTLIMSNN 401 (1269)
Q Consensus 368 ~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n 401 (1269)
.|++|++++|.++...-..+..+++|+.|+|++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C 95 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKC 95 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCC
Confidence 3444444444444333333344444444444444
No 171
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=97.04 E-value=0.00044 Score=63.26 Aligned_cols=102 Identities=12% Similarity=0.113 Sum_probs=74.3
Q ss_pred CceeEEEEcccCCHHHHHHHHHHhhhcCCCCceEEEecccCCCCCchhHHHHHHHHhcceEEEEecccchhhhhhHHHHH
Q psy5670 1083 KLFDAFVSYSSKDEAFVAEELAPILENGDPAYKLCLHYREFPVGGYIGDTIVQAVESSRRTIMVLSENFIKSEWCRYEFK 1162 (1269)
Q Consensus 1083 ~~yDafvsy~~~d~~~v~~~l~~~Le~~~~~~~l~~~~rd~~~G~~~~~~i~~~i~~Sr~~i~vlS~~~~~s~w~~~e~~ 1162 (1269)
+.|.+||||+.+| -.+.|+..|. ++||... | +.|+.|..+|++++.....++|+++|++
T Consensus 3 ~~~~lFISh~~~d---~~~~L~~~l~--~~~f~~~----~------------~~I~~~~~vIvL~G~~t~~s~wv~~EI~ 61 (111)
T 1eiw_A 3 AEIRLYITEGEVE---DYRVFLERLE--QSGLEWR----P------------ATPEDADAVIVLAGLWGTRRDEILGAVD 61 (111)
T ss_dssp CCEEEEECCCCSH---HHHHHHHHHH--HHCSCEE----E------------CCSSSCSEEEEEGGGTTTSHHHHHHHHH
T ss_pred ceEEEEEecccHh---HHHHHHHHHh--CCCCeee----c------------CccccCCEEEEEeCCCcCCChHHHHHHH
Confidence 5799999999998 3566777775 4566543 2 7789999999999999999999999999
Q ss_pred HHHHHHhcCCCeEEEEEeCCCCCCCCCHHHHHHHhcCceEEcCCcchHHHHHHhC
Q psy5670 1163 SAHHQVLRGKKRLIVILLGEVPQKDLDPDIRLYLKSNTYLQWGDKLFWEKLKFAL 1217 (1269)
Q Consensus 1163 ~a~~~~~~~~~~~i~i~~~~~~~~~~~~~l~~~l~~~~~l~w~~~~Fw~~l~~~l 1217 (1269)
.|.. .++.+|.|-.... +.+|..+.. .......|. |+.+..|+
T Consensus 62 ~A~~----~gkpIigV~~~g~--~~~P~~l~~--~a~~iV~Wn----~~~I~~aI 104 (111)
T 1eiw_A 62 LARK----SSKPIITVRPYGL--ENVPPELEA--VSSEVVGWN----PHCIRDAL 104 (111)
T ss_dssp HHTT----TTCCEEEECCSSS--SCCCTTHHH--HCSEEECSC----HHHHHHHH
T ss_pred HHHH----cCCCEEEEEcCCC--CcCCHHHHh--hCceeccCC----HHHHHHHH
Confidence 8764 4477777766554 346665332 245578887 55555443
No 172
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.61 E-value=0.0039 Score=63.81 Aligned_cols=40 Identities=23% Similarity=0.470 Sum_probs=17.4
Q ss_pred CCCCCcEEEccCCCCC-----CchhhhcCCCCCcEEECCCCCCCc
Q psy5670 437 NSTSLQDFHLNGNKLT-----EIPKVLRNLHSLKTLDLGDNLITE 476 (1269)
Q Consensus 437 ~l~~L~~L~Ls~n~l~-----~lp~~l~~l~~L~~L~Ls~n~i~~ 476 (1269)
..+.|+.|+|++|.+. .+...+..-+.|++|+|++|.|+.
T Consensus 68 ~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~ 112 (197)
T 1pgv_A 68 NSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTP 112 (197)
T ss_dssp TCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH
T ss_pred hCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCH
Confidence 3344444444444443 222333334445555555554443
No 173
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.43 E-value=0.0055 Score=62.69 Aligned_cols=58 Identities=19% Similarity=0.237 Sum_probs=27.3
Q ss_pred CCCCEEEccCCCCCccC----hhhhcCCCCCcEEEccCCCCC-----CchhhhcCCCCCcEEECCCC
Q psy5670 415 TALSVLSLDNNELEYIE----ENALKNSTSLQDFHLNGNKLT-----EIPKVLRNLHSLKTLDLGDN 472 (1269)
Q Consensus 415 ~~L~~L~Ls~n~i~~~~----~~~~~~l~~L~~L~Ls~n~l~-----~lp~~l~~l~~L~~L~Ls~n 472 (1269)
+.|+.|+|++|.+.... ..++...+.|++|+|++|.|+ .+...+..-+.|++|+|++|
T Consensus 70 ~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 70 KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred CCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 44444444444444221 123334455555555555555 22234444455666666544
No 174
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=92.97 E-value=0.13 Score=46.21 Aligned_cols=48 Identities=17% Similarity=0.291 Sum_probs=25.8
Q ss_pred CCCCCCcCCCcCCCCCCccEEEccCcCccccccccccCCCCCCEEeCCC
Q psy5670 812 GNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDD 860 (1269)
Q Consensus 812 ~n~i~~l~~~~f~~~~~L~~L~l~~n~i~~i~~~~f~~l~~L~~L~L~~ 860 (1269)
|..++.|...+|.++.+|+.+.|..+ ++.|...+|.++.+|+.+.+.+
T Consensus 5 g~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 5 GEPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred CCccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 34455555556666555555555432 4555555555555555555544
No 175
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=92.63 E-value=0.13 Score=46.16 Aligned_cols=50 Identities=14% Similarity=0.149 Sum_probs=37.5
Q ss_pred CcCccccccccccCCCCCCEEeCCCCCCcccCcccccCCcccCeeeccccc
Q psy5670 836 SSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNK 886 (1269)
Q Consensus 836 ~n~i~~i~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~ 886 (1269)
+..++.|...+|.++++|+.+.|.. .++.|...+|.++.+|+.+.+....
T Consensus 5 g~~vt~I~~~aF~~c~~L~~i~iP~-~v~~Ig~~aF~~C~~L~~i~~~~~~ 54 (100)
T 2lz0_A 5 GEPVVGMDKSLFAGNTVIREITVQP-NIGLLYDGMFSGCTALEKLILTGED 54 (100)
T ss_dssp CCCCCSSCSCTTTTCTTCCCEEECT-TSSCCCTTSSTTCTTCCCEEECCSC
T ss_pred CCccCEecHHHhcCCCCCcEEEcCC-chheEcHHHHhccCCccEEEEcCCC
Confidence 3467777888888888888888874 4777877888888888888776654
No 176
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=91.33 E-value=0.55 Score=46.06 Aligned_cols=84 Identities=18% Similarity=0.139 Sum_probs=57.0
Q ss_pred ccCCHHHHHHHHHHhhhcCCCCceEEEe-------cccCCC-CCchhHHHHHHHHhcceEEEEecccchhhhhhHHHHHH
Q psy5670 1092 SSKDEAFVAEELAPILENGDPAYKLCLH-------YREFPV-GGYIGDTIVQAVESSRRTIMVLSENFIKSEWCRYEFKS 1163 (1269)
Q Consensus 1092 ~~~d~~~v~~~l~~~Le~~~~~~~l~~~-------~rd~~~-G~~~~~~i~~~i~~Sr~~i~vlS~~~~~s~w~~~e~~~ 1163 (1269)
+.+|.... +.|...-++ +.-|.. .+ .||-.. -.+|-..+.+-|++|+.+|+++|++...+.|-..|++.
T Consensus 27 a~~Di~yy-~lL~aWk~n-~n~F~F-~D~Hd~~y~vrDsS~~e~tIKrrLReRI~~Sk~vIllIs~~T~~s~~v~wEIe~ 103 (189)
T 3hyn_A 27 STHDFVYY-NMLRMWKGE-DNSFPF-NDAHDKTYNVRDGSDWEKTLKPRLHTRLDNSKNIILFLSSITANSRALREEMNY 103 (189)
T ss_dssp GSTTHHHH-HHHHHHHHH-CTTSSC-CBTTTTCCCTTSCCCTTTTHHHHHHHHHHTEEEEEEECCTTCCCCHHHHHHHHH
T ss_pred ccchHHHH-HHHHHHHcC-CCceee-cchhhccccccccccHHHHHHHHHHHHHHhcCcEEEEEecCccccchhHHHHHH
Confidence 45666554 335444444 222432 22 244445 45677999999999999999999999999999999999
Q ss_pred HHHHHhcCCCeEEEEEeC
Q psy5670 1164 AHHQVLRGKKRLIVILLG 1181 (1269)
Q Consensus 1164 a~~~~~~~~~~~i~i~~~ 1181 (1269)
|..+ .+.+||.|-.+
T Consensus 104 Ai~~---~~~PII~Vy~~ 118 (189)
T 3hyn_A 104 GIGT---KGLPVIVIYPD 118 (189)
T ss_dssp HTTT---TCCCEEEEETT
T ss_pred HHHh---cCCcEEEEECC
Confidence 8731 33566666554
No 177
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=49.61 E-value=83 Score=30.51 Aligned_cols=72 Identities=11% Similarity=0.069 Sum_probs=48.4
Q ss_pred cccCC-HHHHHHHHHHhhhcCCCCceEEEecccCCC-CCchhHHHHHHHHhcceEEEEecc---cchhhhhhHHHHHHHH
Q psy5670 1091 YSSKD-EAFVAEELAPILENGDPAYKLCLHYREFPV-GGYIGDTIVQAVESSRRTIMVLSE---NFIKSEWCRYEFKSAH 1165 (1269)
Q Consensus 1091 y~~~d-~~~v~~~l~~~Le~~~~~~~l~~~~rd~~~-G~~~~~~i~~~i~~Sr~~i~vlS~---~~~~s~w~~~e~~~a~ 1165 (1269)
|+.++ .+|.. ++...|++ .|+.++....+-.+ +..|.++=.+.|++|.-+|.+++| ... +.-..+|+-.|.
T Consensus 20 F~~~e~~~~~~-~l~~~l~~--~G~~v~~P~~~~~~~~~~i~~~d~~~i~~aD~vVA~ldpf~g~~~-D~GTafEiGyA~ 95 (161)
T 2f62_A 20 FNPDMGASYYN-KVRELLKK--ENVMPLIPTDNEATEALDIRQKNIQMIKDCDAVIADLSPFRGHEP-DCGTAFEVGCAA 95 (161)
T ss_dssp GSTTTTHHHHH-HHHHHHHT--TTCEEECTTTTCCSSHHHHHHHHHHHHHHCSEEEEECCCCSSSSC-CHHHHHHHHHHH
T ss_pred CCHHHHHHHHH-HHHHHHHH--CCCEEECCCccCcchHHHHHHHHHHHHHhCCEEEEEecCCCCCCC-CCcHHHHHHHHH
Confidence 45666 66764 58999985 58888776543322 223344448899999999999996 334 334577777766
Q ss_pred H
Q psy5670 1166 H 1166 (1269)
Q Consensus 1166 ~ 1166 (1269)
.
T Consensus 96 A 96 (161)
T 2f62_A 96 A 96 (161)
T ss_dssp H
T ss_pred H
Confidence 5
No 178
>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A
Probab=36.26 E-value=48 Score=31.62 Aligned_cols=52 Identities=12% Similarity=0.195 Sum_probs=38.7
Q ss_pred CCCCchhHHHHHHHHhcceEEEEecccchhhhhhHHHHHHHHHHHhcCCCeEEEEEe
Q psy5670 1124 PVGGYIGDTIVQAVESSRRTIMVLSENFIKSEWCRYEFKSAHHQVLRGKKRLIVILL 1180 (1269)
Q Consensus 1124 ~~G~~~~~~i~~~i~~Sr~~i~vlS~~~~~s~w~~~e~~~a~~~~~~~~~~~i~i~~ 1180 (1269)
.||+.+.+.+.+.|+++++.|.|.++.| .+ .++..|+.++.+.+-+|-+|+-
T Consensus 10 ~p~~~~~~~~~~~i~~A~~~I~i~~~~~-~~----~~i~~aL~~a~~rGV~Vril~~ 61 (155)
T 1byr_A 10 SPEGSARVLVLSAIDSAKTSIRMMAYSF-TA----PDIMKALVAAKKRGVDVKIVID 61 (155)
T ss_dssp ETTTHHHHHHHHHHHHCSSEEEEEESSB-CC----HHHHHHHHHHHHTTCEEEEEEE
T ss_pred CCCCcHHHHHHHHHHHHhhEEEEEEEEe-CC----HHHHHHHHHHHHCCCEEEEEEe
Confidence 3677889999999999999999999876 32 4666777777766644444443
No 179
>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}
Probab=34.77 E-value=1.3e+02 Score=29.20 Aligned_cols=86 Identities=16% Similarity=0.080 Sum_probs=57.1
Q ss_pred cccCCHHHHHHHHHHhhhcCCCCceEEEecccCCCC----C----chhHHHHHHHHhcceEEEEecccchhhhhhHHHHH
Q psy5670 1091 YSSKDEAFVAEELAPILENGDPAYKLCLHYREFPVG----G----YIGDTIVQAVESSRRTIMVLSENFIKSEWCRYEFK 1162 (1269)
Q Consensus 1091 y~~~d~~~v~~~l~~~Le~~~~~~~l~~~~rd~~~G----~----~~~~~i~~~i~~Sr~~i~vlS~~~~~s~w~~~e~~ 1162 (1269)
|+.++..|. +.+...|++..+|+.++.+.++-.+. . .|.+.=.+.|++|.-+|.++.... .+....+|+-
T Consensus 14 Fs~~q~~~~-~~l~~~L~~~~~g~~v~~P~~~~~~~~~~~~~~~~~i~~~D~~~i~~aD~viA~ldg~~-~D~Gt~~EiG 91 (162)
T 3ehd_A 14 FSQADLRYN-AYLVEQIRQLDKTIDLYLPQENAAINDKSAYADSKMIALADTENVLASDLLVALLDGPT-IDAGVASEIG 91 (162)
T ss_dssp SSHHHHHHH-HHHHHHHHTTCTTEEEECGGGGSCCCCTTCCCCHHHHHHHHHHHHHTCSEEEEECCSSS-CCHHHHHHHH
T ss_pred CCHHHHHHH-HHHHHHHHhcCCCCEEECCCccccccccccchHHHHHHHHHHHHHHHCCEEEEECCCCC-CCCCHHHHHH
Confidence 344545555 45888998644789999888776432 2 245555668999999999995333 4667788998
Q ss_pred HHHHHHhcCCCeEEEEEeCCC
Q psy5670 1163 SAHHQVLRGKKRLIVILLGEV 1183 (1269)
Q Consensus 1163 ~a~~~~~~~~~~~i~i~~~~~ 1183 (1269)
.|.. .++. |+++..|.
T Consensus 92 ~A~a----~gkP-Vi~~~~D~ 107 (162)
T 3ehd_A 92 VAYA----KGIP-VVALYTDS 107 (162)
T ss_dssp HHHH----TTCC-EEEECCCG
T ss_pred HHHH----CCCE-EEEEEcCc
Confidence 8775 2344 44455554
Done!