RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5670
(1269 letters)
>gnl|CDD|214587 smart00255, TIR, Toll - interleukin 1 - resistance.
Length = 140
Score = 130 bits (328), Expect = 5e-35
Identities = 48/141 (34%), Positives = 68/141 (48%), Gaps = 9/141 (6%)
Query: 1085 FDAFVSYSSKDEAFVAEELAPILENGDPAYKLCLHYREFPVGGYIGDTIVQAVESSRRTI 1144
+D F+SYS K+ V E L Y LC+ +F GG + I +A+E SR I
Sbjct: 2 YDVFISYSGKE--DVRNEFLSHLLEKLRGYGLCVFIDDFEPGGGDLEEIDEAIEKSRIAI 59
Query: 1145 MVLSENFIKSEWCRYEFKSAHHQVLR-GKKRLIVILLGEVPQ--KDLDPDIRLYLKSNTY 1201
+VLS N+ +SEWC E +A L G R+I I +P + R K N Y
Sbjct: 60 VVLSPNYAESEWCLDELVAALENALEEGGLRVIPIFYEVIPSDVRKQPGKFRKVFKKN-Y 118
Query: 1202 LQWGDKL---FWEKLKFALPD 1219
L+W + FW+K +A+P
Sbjct: 119 LKWPEDEKEQFWKKALYAVPS 139
>gnl|CDD|216585 pfam01582, TIR, TIR domain. The Toll/interleukin-1 receptor (TIR)
homology domain is an intracellular signalling domain
found in MyD88, interleukin 1 receptor and the Toll
receptor. It contains three highly-conserved regions, and
mediates protein-protein interactions between the
Toll-like receptors (TLRs) and signal-transduction
components. TIR-like motifs are also found in plant
proteins thought to be involved in resistance to disease.
When activated, TIR domains recruit cytoplasmic adaptor
proteins MyD88 and TOLLIP (Toll interacting protein). In
turn, these associate with various kinases to set off
signalling cascades.
Length = 135
Score = 106 bits (267), Expect = 8e-27
Identities = 43/135 (31%), Positives = 62/135 (45%), Gaps = 10/135 (7%)
Query: 1087 AFVSYSSKD-EAFVAEELAPILENGDPAYKLCLHYREFPVGGYIGDTIVQAVESSRRTIM 1145
FVS+S KD L LE KLC+ R+ G I + + +A+E SRR I+
Sbjct: 1 VFVSFSGKDDRDTFVSHLLKELEEK--GIKLCIDDRDELPGESILENLFEAIEKSRRAIV 58
Query: 1146 VLSENFIKSEWCRYEFKSAHHQVLR-GKKRLIVILLGEVPQKDLDPD-IRLYLKSNTYLQ 1203
+ S N+ SEWC E L G K++I+ + +V D+ P + L+
Sbjct: 59 IFSSNYASSEWCLDELVEIVKCALEGGGKKVILPIFYKVDPSDVRPQSGKFGKAFLKTLK 118
Query: 1204 W-GDKL----FWEKL 1213
W GDK FW+K
Sbjct: 119 WSGDKEDKIRFWKKA 133
>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein
kinase; Provisional.
Length = 968
Score = 107 bits (269), Expect = 2e-23
Identities = 153/531 (28%), Positives = 231/531 (43%), Gaps = 73/531 (13%)
Query: 153 MSLDISHNVFTDELQSLESLDLSMNSI-WTLPDAIFCPLQSLSYLNLTQNKLSNVATFSF 211
+S IS +F L +++++LS N + +PD IF SL YLNL+ N +
Sbjct: 81 ISGKISSAIF--RLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGS 138
Query: 212 SNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSL 271
NL LDLSNN S L+ L L GN+L ++L L SL
Sbjct: 139 IP--------NLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSL 190
Query: 272 TVLNLSVNNLV-NIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELT 330
L L+ N LV IP EL Q + LK +YL N+++ P LT L LDL N LT
Sbjct: 191 EFLTLASNQLVGQIPREL-GQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLT 249
Query: 331 EEWVNAATFSGLHRLVVLNIAYNKMN-KLDSSIFKDLYRLQVLHLENNQIESIHRNTFAS 389
++ L L L + NK++ + SIF L +L L L +N +
Sbjct: 250 GPI--PSSLGNLKNLQYLFLYQNKLSGPIPPSIF-SLQKLISLDLSDNSLSGEIPELVIQ 306
Query: 390 LSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGN 449
L NL L + +N +L SL L VL L +N+ L +L L+ N
Sbjct: 307 LQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTN 366
Query: 450 KLT-EIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEK 508
LT EIP+ L + +L L L N + SL + L +RL +N+ S F K
Sbjct: 367 NLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTK 426
Query: 509 LSVLTILNLASNKIQ-KVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISEN 567
L ++ L++++N +Q ++ + +D +P+L L+++ N
Sbjct: 427 LPLVYFLDISNNNLQGRINSRKWD------------------------MPSLQMLSLARN 462
Query: 568 -----LLEWFDYALIPADLQWLDIHGNQISE-----LGNYFEIESQLRLTYFDASSNKLT 617
L + F L+ LD+ NQ S LG+ E+ QL+L S NKL+
Sbjct: 463 KFFGGLPDSFG----SKRLENLDLSRNQFSGAVPRKLGSLSEL-MQLKL-----SENKLS 512
Query: 618 ELTGNAIPHSVE------NLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRL 662
IP + +L L++N +S P +F P L+++DL N+L
Sbjct: 513 ----GEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQL 559
Score = 88.8 bits (220), Expect = 1e-17
Identities = 116/411 (28%), Positives = 174/411 (42%), Gaps = 67/411 (16%)
Query: 165 ELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLR 224
L SL LDL N++ + L++L YL L QNKLS S + L
Sbjct: 234 GLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQ------KLI 287
Query: 225 VLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNI 284
LDLS+NS E +L L+ L+L N T AL L L VL L N
Sbjct: 288 SLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGE 347
Query: 285 PPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSG-LH 343
P ++L + NN L VLDLS N LT E SG L
Sbjct: 348 IP------KNLGK---HNN---------------LTVLDLSTNNLTGEIPEGLCSSGNLF 383
Query: 344 RLVVLNIAYNKMNKLDSSIFKDL---YRLQVLHLENNQIESIHRNTFASLSNLHTLIMSN 400
+L++ + N L+ I K L L+ + L++N + F L ++ L +SN
Sbjct: 384 KLILFS------NSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISN 437
Query: 401 NKLK-RIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTE-IPKVL 458
N L+ RI S D + +L +LSL N+ + S L++ L+ N+ + +P+ L
Sbjct: 438 NNLQGRINSRKWD-MPSLQMLSLARNKF-FGGLPDSFGSKRLENLDLSRNQFSGAVPRKL 495
Query: 459 RNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLA 518
+L L L L +N ++ L+S +L L L+ N +S F ++ VL+ L+L+
Sbjct: 496 GSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLS 555
Query: 519 SNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLL 569
N +L G ++G + +LV +NIS N L
Sbjct: 556 QN-------------------QLSGEIPKNLG----NVESLVQVNISHNHL 583
Score = 49.1 bits (117), Expect = 1e-05
Identities = 53/192 (27%), Positives = 76/192 (39%), Gaps = 34/192 (17%)
Query: 162 FTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGI 221
FT +L + LD+S N++ ++ + SL L+L +NK SF +
Sbjct: 424 FT-KLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSK------- 475
Query: 222 NLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNL 281
L LDLS N F LS L +L L N L+ L L L+LS N L
Sbjct: 476 RLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQL 535
Query: 282 VNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSG 341
P F++ VL+Q LDLS N+L+ E
Sbjct: 536 SGQIPASFSE---------------------MPVLSQ---LDLSQNQLSGEI--PKNLGN 569
Query: 342 LHRLVVLNIAYN 353
+ LV +NI++N
Sbjct: 570 VESLVQVNISHN 581
Score = 38.7 bits (90), Expect = 0.026
Identities = 51/196 (26%), Positives = 89/196 (45%), Gaps = 29/196 (14%)
Query: 483 NSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQ-KVEAGTFDNNSNLVAIRL 541
N+ ++ + L+ NIS +L + +NL++N++ + F +S+L + L
Sbjct: 66 NNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNL 125
Query: 542 DGNYLTDIGGLFPK--LPNLVWLNISENLLEWFDYALIPAD------LQWLDIHGNQIS- 592
N T G P+ +PNL L++S N+L IP D L+ LD+ GN +
Sbjct: 126 SNNNFT---GSIPRGSIPNLETLDLSNNMLS----GEIPNDIGSFSSLKVLDLGGNVLVG 178
Query: 593 ELGNYFEIESQLRLTYFDASSNKLTELTGNAIPH------SVENLFLTNNLISKVQPYTF 646
++ N + + L + +SN+L IP S++ ++L N +S PY
Sbjct: 179 KIPNS--LTNLTSLEFLTLASNQLV----GQIPRELGQMKSLKWIYLGYNNLSGEIPYEI 232
Query: 647 FMKPNLTRVDLVGNRL 662
+L +DLV N L
Sbjct: 233 GGLTSLNHLDLVYNNL 248
Score = 34.4 bits (79), Expect = 0.42
Identities = 28/86 (32%), Positives = 40/86 (46%)
Query: 827 KKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNK 886
K LQ LFL + + + L++LI L L DN L+ +L+NL L+L N
Sbjct: 260 KNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNN 319
Query: 887 IIYISNRTFLSLTHLKVLQLDHNRIT 912
SL L+VLQL N+ +
Sbjct: 320 FTGKIPVALTSLPRLQVLQLWSNKFS 345
>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function
unknown].
Length = 394
Score = 84.6 bits (209), Expect = 5e-17
Identities = 81/310 (26%), Positives = 130/310 (41%), Gaps = 9/310 (2%)
Query: 365 DLYRLQVLHLENNQIESIH--RNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSL 422
L RL L L + S +L L +L ++ N+L R + L LT L+ L L
Sbjct: 65 SLSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRL-RSNISELLELTNLTSLDL 123
Query: 423 DNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSL 482
DNN + I ++L++ L+ NK+ +P LRNL +LK LDL N ++++ L
Sbjct: 124 DNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLS 183
Query: 483 NSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLD 542
N L L L L+ N IS++ E LS L L+L++N I ++ + N NL + L
Sbjct: 184 N-LSNLNNLDLSGNKISDLPP-EIELLSALEELDLSNNSIIELL-SSLSNLKNLSGLELS 240
Query: 543 GNYLTDIGGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIES 602
N L D+ L NL L++S N + +L+ LD+ GN +S +
Sbjct: 241 NNKLEDLPESIGNLSNLETLDLSNNQISSISSLGSLTNLRELDLSGNSLSNALPLIALLL 300
Query: 603 QLRLTYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRL 662
L + N + +N + P + +L + + N L
Sbjct: 301 LLLELLLNLLLTLKALELKLNSILL--NNNILSNGET-SSPEALSILESLNNLWTLDNAL 357
Query: 663 KNINQTALRI 672
N +
Sbjct: 358 DESNLNRYIV 367
Score = 80.8 bits (199), Expect = 7e-16
Identities = 83/286 (29%), Positives = 132/286 (46%), Gaps = 13/286 (4%)
Query: 241 FSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYL 300
L L L L N L L L +LT L+L NN+ +IPP + +LKE+ L
Sbjct: 89 LLNLLPLPSLDLNLNRLRSNISE-LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDL 147
Query: 301 QNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDS 360
+N I L + N L L LDLS N+L++ S L L L+++ NK++ L
Sbjct: 148 SDNKIESLPSPLRN-LPNLKNLDLSFNDLSD---LPKLLSNLSNLNNLDLSGNKISDLPP 203
Query: 361 SIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVL 420
I + L L+ L L NN I + ++ ++L NL L +SNNKL+ + S+ +L+ L L
Sbjct: 204 EI-ELLSALEELDLSNNSIIEL-LSSLSNLKNLSGLELSNNKLEDLP-ESIGNLSNLETL 260
Query: 421 SLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLG---DNLITEI 477
L NN++ I ++L + T+L++ L+GN L+ ++ L L L L E+
Sbjct: 261 DLSNNQISSI--SSLGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLNLLLTLKALEL 318
Query: 478 NNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQ 523
S+ + + T + + L L SN +
Sbjct: 319 KLNSILLNNNILSNGETSSPEALSILESLNNLWTLDNALDESNLNR 364
Score = 33.4 bits (76), Expect = 0.69
Identities = 52/189 (27%), Positives = 79/189 (41%), Gaps = 19/189 (10%)
Query: 100 QSSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISH 159
+ P + L +LK+L + F + +L L L L L +
Sbjct: 151 KIESLPSPLRNLPNLKNLDLSFNDLSDLPK-LLSNLSNLNNLDLSGNKI--------SDL 201
Query: 160 NVFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARC 219
+ L +LE LDLS NSI L ++ L++LS L L+ NKL ++ +
Sbjct: 202 PPEIELLSALEELDLSNNSIIELLSSLSN-LKNLSGLELSNNKLEDLPESIGNLS----- 255
Query: 220 GINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVN 279
NL LDLSNN S+ + L+ L+EL L GN L+ L L +L +
Sbjct: 256 --NLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLNLLL 311
Query: 280 NLVNIPPEL 288
L + +L
Sbjct: 312 TLKALELKL 320
Score = 33.0 bits (75), Expect = 1.0
Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 3/114 (2%)
Query: 819 GSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLR 878
GS + + L L LN + + + ++ L L L LD+N +T+I NL+
Sbjct: 85 GSENLLNLLPLPSLDLNLNRLRSNISELLE-LTNLTSLDLDNNNITDIPPLIGLLKSNLK 143
Query: 879 ELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSF-AVWHLSSQIQSITLTSN 931
EL L NKI + + +L +LK L L N ++ + S + ++ L+ N
Sbjct: 144 ELDLSDNKIESLPSPL-RNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGN 196
Score = 30.3 bits (68), Expect = 6.2
Identities = 32/109 (29%), Positives = 49/109 (44%), Gaps = 3/109 (2%)
Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
T L LD N I + + + L+ L L+ + +E++ + N L L L L N L++
Sbjct: 119 TSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRN-LPNLKNLDLSFNDLSD 177
Query: 866 IRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSF 914
+ L NL L L NKI + L L+ L+ L L +N I
Sbjct: 178 L-PKLLSNLSNLNNLDLSGNKISDLPPEIEL-LSALEELDLSNNSIIEL 224
>gnl|CDD|222311 pfam13676, TIR_2, TIR domain. This is a family of bacterial
Toll-like receptors.
Length = 102
Score = 74.5 bits (184), Expect = 5e-16
Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 10/98 (10%)
Query: 1088 FVSYSSKDEAFVAEELAPILE-NGDPAYKLCLHYREFPVGGYIGDTIVQAVESSRRTIMV 1146
F+SY+S D + AE LA LE G + + P G D I +A+ S+ +++
Sbjct: 2 FISYASADREW-AEWLADALEAAG---IR-VWLDWDIPPGEDWRDEIEEALRSADVVLVL 56
Query: 1147 LSENFIKSEWCRYEFKSAHHQVLRGKKRLIVILLGEVP 1184
LS ++ S WCR E+ +A KRLI + L +
Sbjct: 57 LSPAYLASPWCRAEWGAAL----ERGKRLIPVRLEDCE 90
>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease
inhibitor (RI)-like subfamily. LRRs are 20-29 residue
sequence motifs present in many proteins that
participate in protein-protein interactions and have
different functions and cellular locations. LRRs
correspond to structural units consisting of a beta
strand (LxxLxLxxN/CxL conserved pattern) and an alpha
helix. This alignment contains 12 strands corresponding
to 11 full repeats, consistent with the extent observed
in the subfamily acting as Ran GTPase Activating
Proteins (RanGAP1).
Length = 319
Score = 69.7 bits (171), Expect = 2e-12
Identities = 91/340 (26%), Positives = 128/340 (37%), Gaps = 69/340 (20%)
Query: 164 DELQSLESLDLSMNSIWT-----LPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTAR 218
+L L+ L L N++ L A+ P SL L L+ N+ + S
Sbjct: 20 PKLLCLQVLRLEGNTLGEEAAKALASAL-RPQPSLKELCLSLNETGRIPRGLQSLLQGLT 78
Query: 219 CGINLRVLDLSNNSFDSLPAEGFSRLSR---LQELYLQGN-----ILTFLADHALDGLNS 270
G L+ LDLS+N+ L R LQEL L N L LA D +
Sbjct: 79 KGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPA 138
Query: 271 LTVLNLSVNNLVNIPPE----LFNQSRDLKEVYLQNNSIN-----VLAPGIFNVLTQLIV 321
L L L N L E +RDLKE+ L NN I LA G L V
Sbjct: 139 LEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEG-LKANCNLEV 197
Query: 322 LDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIES 381
LDL+NN LT+E A+ + L L+VL+L +N +
Sbjct: 198 LDLNNNGLTDE--GASALAE--------------------TLASLKSLEVLNLGDNNL-- 233
Query: 382 IHRNTFASLSNLHT-LIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTS 440
T A + L + L+ N L + S S + +T L E + E S
Sbjct: 234 ----TDAGAAALASALLSPNISLLTL-SLSCNDITDDGAKDL----AEVLAEKE-----S 279
Query: 441 LQDFHLNGNKLTE-----IPKVLR-NLHSLKTLDLGDNLI 474
L + L GNK E + + L + L++L + D+
Sbjct: 280 LLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319
Score = 53.9 bits (130), Expect = 2e-07
Identities = 81/300 (27%), Positives = 111/300 (37%), Gaps = 64/300 (21%)
Query: 360 SSIFKDLYRLQVLHLENNQIESIHRNTFASL----SNLHTLIMSNNKLKRIESN------ 409
+ + L LQVL LE N + AS +L L +S N+ RI
Sbjct: 16 TELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQ 75
Query: 410 SLDSLTALSVLSLDNNELEY----IEENALKNSTSLQDFHLNGNKLTE-----IPKVLRN 460
L L L L +N L + E+ L++S+ LQ+ LN N L + + K L++
Sbjct: 76 GLTKGCGLQELDLSDNALGPDGCGVLESLLRSSS-LQELKLNNNGLGDRGLRLLAKGLKD 134
Query: 461 L-HSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLAS 519
L +L+ L LG N L S LA L LNLA+
Sbjct: 135 LPPALEKLVLGRN------RLEGASCEALAK--------------ALRANRDLKELNLAN 174
Query: 520 NKIQKVEAGT------FDNNSNLVAIRLDGNYLTDIG-----GLFPKLPNLVWLNISENL 568
N I +AG N NL + L+ N LTD G L +L LN+ +N
Sbjct: 175 NGIG--DAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNN 232
Query: 569 L-EWFDYALIPA------DLQWLDIHGNQISELGNYFEIESQ---LRLTYFDASSNKLTE 618
L + AL A L L + N I++ G E L D NK E
Sbjct: 233 LTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGE 292
Score = 50.4 bits (121), Expect = 3e-06
Identities = 80/318 (25%), Positives = 121/318 (38%), Gaps = 67/318 (21%)
Query: 248 QELYLQGNIL-TFLADHALDGLNSLTVLNLSVNNLVN-----IPPELFNQSRDLKEVYLQ 301
+L L+G +L T A L L L VL L N L + L Q LKE+ L
Sbjct: 1 LQLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQ-PSLKELCLS 59
Query: 302 NN------SINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKM 355
N L LDLS+N L + L R
Sbjct: 60 LNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPD--GCGVLESLLRS---------- 107
Query: 356 NKLDSSIFKDLYRLQVLHLENNQIESIHRNTFA-----SLSNLHTLIMSNNKLK----RI 406
LQ L L NN + A L L++ N+L+
Sbjct: 108 -----------SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEA 156
Query: 407 ESNSLDSLTALSVLSLDNNEL-----EYIEENALKNSTSLQDFHLNGNKLTE-----IPK 456
+ +L + L L+L NN + + E LK + +L+ LN N LT+ + +
Sbjct: 157 LAKALRANRDLKELNLANNGIGDAGIRALAE-GLKANCNLEVLDLNNNGLTDEGASALAE 215
Query: 457 VLRNLHSLKTLDLGDNLIT-----EINNLSLNSLHQLAGLRLTENNISN-----ISKGVF 506
L +L SL+ L+LGDN +T + + L+ L L L+ N+I++ +++ +
Sbjct: 216 TLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLA 275
Query: 507 EKLSVLTILNLASNKIQK 524
EK S L L+L NK +
Sbjct: 276 EKES-LLELDLRGNKFGE 292
Score = 43.5 bits (103), Expect = 4e-04
Identities = 40/163 (24%), Positives = 61/163 (37%), Gaps = 26/163 (15%)
Query: 113 DLKDLSVEFCKIGNLS----AGSFRGLRKLKTLTLRTHN-TDWSTMSL--DISHNVFTDE 165
L+ L + ++ S A + R R LK L L + D +L + N
Sbjct: 138 ALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKAN----- 192
Query: 166 LQSLESLDLSMNSIWTLPDAIFC----PLQSLSYLNLTQNKLSNV--ATFSFSNYDTARC 219
+LE LDL+ N + + L+SL LNL N L++ A + +
Sbjct: 193 -CNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNIS 251
Query: 220 GINLRVLDLSNNSFDSLPAEGFSRL----SRLQELYLQGNILT 258
L L LS N A+ + + L EL L+GN
Sbjct: 252 ---LLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG 291
>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat.
Length = 60
Score = 57.2 bits (139), Expect = 2e-10
Identities = 29/60 (48%), Positives = 35/60 (58%)
Query: 222 NLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNL 281
NL+ LDLSNN +P F L L+ L L GN LT ++ A GL SL L+LS NNL
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 57.2 bits (139), Expect = 2e-10
Identities = 21/60 (35%), Positives = 27/60 (45%)
Query: 368 RLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNEL 427
L+ L L NN++ I F L NL L +S N L I + L +L L L N L
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 55.6 bits (135), Expect = 6e-10
Identities = 23/59 (38%), Positives = 29/59 (49%)
Query: 853 LIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRI 911
L L L +NRLT I F+ L NL+ L L N + IS F L L+ L L N +
Sbjct: 2 LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 54.5 bits (132), Expect = 2e-09
Identities = 25/60 (41%), Positives = 35/60 (58%)
Query: 246 RLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSI 305
L+ L L N LT + D A GL +L VL+LS NNL +I PE F+ L+ + L N++
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 53.3 bits (129), Expect = 5e-09
Identities = 20/60 (33%), Positives = 32/60 (53%)
Query: 344 RLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKL 403
L L+++ N++ + FK L L+VL L N + SI F+ L +L +L +S N L
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 51.0 bits (123), Expect = 3e-08
Identities = 25/60 (41%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 295 LKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNK 354
LK + L NN + V+ G F L L VLDLS N LT ++ FSGL L L+++ N
Sbjct: 2 LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTS--ISPEAFSGLPSLRSLDLSGNN 59
Score = 50.6 bits (122), Expect = 4e-08
Identities = 23/60 (38%), Positives = 29/60 (48%)
Query: 392 NLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKL 451
NL +L +SNN+L I + L L VL L N L I A SL+ L+GN L
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 50.2 bits (121), Expect = 5e-08
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 318 QLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENN 377
L LDLSNN LT + F GL L VL+++ N + + F L L+ L L N
Sbjct: 1 NLKSLDLSNNRLTV--IPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGN 58
Query: 378 QI 379
+
Sbjct: 59 NL 60
Score = 50.2 bits (121), Expect = 5e-08
Identities = 22/60 (36%), Positives = 35/60 (58%)
Query: 463 SLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKI 522
+LK+LDL +N +T I + + L L L L+ NN+++IS F L L L+L+ N +
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 50.2 bits (121), Expect = 6e-08
Identities = 23/60 (38%), Positives = 32/60 (53%)
Query: 270 SLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNEL 329
+L L+LS N L IP F +LK + L N++ ++P F+ L L LDLS N L
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 49.5 bits (119), Expect = 1e-07
Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 417 LSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEI-PKVLRNLHSLKTLDLGDNLI 474
L L L NN L I + A K +L+ L+GN LT I P+ L SL++LDL N +
Sbjct: 2 LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 49.1 bits (118), Expect = 1e-07
Identities = 21/60 (35%), Positives = 30/60 (50%)
Query: 828 KLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKI 887
L+ L L+++ + I + F GL L +L L N LT I F L +LR L L N +
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 47.9 bits (115), Expect = 3e-07
Identities = 17/56 (30%), Positives = 29/56 (51%)
Query: 491 LRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYL 546
L L+ N ++ I G F+ L L +L+L+ N + + F +L ++ L GN L
Sbjct: 5 LDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 44.5 bits (106), Expect = 5e-06
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 440 SLQDFHLNGNKLTEIPK-VLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNI 498
+L+ L+ N+LT IP + L +LK LDL N +T I+ + + L L L L+ NN+
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 44.5 bits (106), Expect = 7e-06
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Query: 876 NLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSF---AVWHLSSQIQSITLTSNP 932
NL+ L L N++ I + F L +LKVL L N +TS A L S ++S+ L+ N
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPS-LRSLDLSGNN 59
Score = 43.7 bits (104), Expect = 1e-05
Identities = 25/66 (37%), Positives = 39/66 (59%), Gaps = 6/66 (9%)
Query: 168 SLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLD 227
+L+SLDLS N + +PD F L +L L+L+ N L++++ +FS +LR LD
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGL------PSLRSLD 54
Query: 228 LSNNSF 233
LS N+
Sbjct: 55 LSGNNL 60
Score = 42.9 bits (102), Expect = 2e-05
Identities = 19/58 (32%), Positives = 31/58 (53%)
Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRL 863
L L NR+ V+ +F G L++L L+ +++ +I + F+GL L L L N L
Sbjct: 3 KSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 42.1 bits (100), Expect = 4e-05
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 512 LTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDI-GGLFPKLPNLVWLNISENLL 569
L L+L++N++ + G F NL + L GN LT I F LP+L L++S N L
Sbjct: 2 LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 39.1 bits (92), Expect = 6e-04
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 156 DISHNVFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKL 203
I F L +L+ LDLS N++ ++ F L SL L+L+ N L
Sbjct: 14 VIPDGAFKG-LPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 34.8 bits (81), Expect = 0.016
Identities = 13/44 (29%), Positives = 25/44 (56%)
Query: 101 SSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLR 144
+ + G+F+ L +LK L + + ++S +F GL L++L L
Sbjct: 13 TVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLS 56
Score = 32.9 bits (76), Expect = 0.084
Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 535 NLVAIRLDGNYLTDIG-GLFPKLPNLVWLNISENLLEWFDYALI--PADLQWLDIHGNQI 591
NL ++ L N LT I G F LPNL L++S N L L+ LD+ GN +
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 31.4 bits (72), Expect = 0.32
Identities = 15/44 (34%), Positives = 26/44 (59%)
Query: 627 SVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTAL 670
++++L L+NN ++ + F PNL +DL GN L +I+ A
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAF 44
Score = 30.6 bits (70), Expect = 0.53
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 605 RLTYFDASSNKLTELTGNAI--PHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRL 662
L D S+N+LT + A +++ L L+ N ++ + P F P+L +DL GN L
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 29.0 bits (66), Expect = 2.1
Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 581 LQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAI--PHSVENLFLTNNLI 638
L+ LD+ N+++ + + + L D S N LT ++ A S+ +L L+ N +
Sbjct: 2 LKSLDLSNNRLTVIPDGA-FKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional.
Length = 754
Score = 50.1 bits (119), Expect = 7e-06
Identities = 65/225 (28%), Positives = 108/225 (48%), Gaps = 22/225 (9%)
Query: 417 LSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITE 476
++ L LDNNEL+ + EN N ++ + N N+LT IP L + +++ ++L N ITE
Sbjct: 201 ITTLILDNNELKSLPENLQGN---IKTLYANSNQLTSIPATLPD--TIQEMELSINRITE 255
Query: 477 INNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNL 536
+ ++L L L N IS + + + E+L L++ + N I+ + A S +
Sbjct: 256 LPERLPSALQSLD---LFHNKISCLPENLPEELRYLSVYD---NSIRTLPAHL---PSGI 306
Query: 537 VAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGN 596
+ + N LT + P P L L EN L +L P LQ LD+ NQI+ L
Sbjct: 307 THLNVQSNSLTALPETLP--PGLKTLEAGENALTSLPASLPPE-LQVLDVSKNQITVLPE 363
Query: 597 YFEIESQLRLTYFDASSNKLTELTGNAIPHSVENLFLTNNLISKV 641
+T D S N LT L N +P +++ + + N + ++
Sbjct: 364 TLPPT----ITTLDVSRNALTNLPEN-LPAALQIMQASRNNLVRL 403
Score = 48.5 bits (115), Expect = 2e-05
Identities = 55/198 (27%), Positives = 90/198 (45%), Gaps = 35/198 (17%)
Query: 168 SLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLD 227
+++ ++LS+N I LP+ + LQS L+L NK+S + + LR L
Sbjct: 242 TIQEMELSINRITELPERLPSALQS---LDLFHNKISCLP-------ENLPEE--LRYLS 289
Query: 228 LSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNL-VNIPP 286
+ +NS +LPA S + L +Q N LT L + GL +L ++ +L ++PP
Sbjct: 290 VYDNSIRTLPAH---LPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTSLPASLPP 346
Query: 287 ELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTE--EWVNAATFSGLHR 344
EL + N I VL + +T LD+S N LT E + AA
Sbjct: 347 ELQVLD-------VSKNQITVLPETLPPTITT---LDVSRNALTNLPENLPAA------- 389
Query: 345 LVVLNIAYNKMNKLDSSI 362
L ++ + N + +L S+
Sbjct: 390 LQIMQASRNNLVRLPESL 407
Score = 32.7 bits (74), Expect = 1.5
Identities = 38/159 (23%), Positives = 69/159 (43%), Gaps = 21/159 (13%)
Query: 318 QLIVLDLSNNELTEEWVNAATFSGLH-RLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLEN 376
Q+ L L NNEL N L + L N++ + +++ + Q + L
Sbjct: 200 QITTLILDNNELKSLPEN------LQGNIKTLYANSNQLTSIPATLPDTI---QEMELSI 250
Query: 377 NQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALK 436
N+I + S L +L + +NK+ + N + L LSV +N + + +
Sbjct: 251 NRITELPERL---PSALQSLDLFHNKISCLPENLPEELRYLSVY---DNSIRTLPAHL-- 302
Query: 437 NSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLIT 475
+ + ++ N LT +P+ L LKTL+ G+N +T
Sbjct: 303 -PSGITHLNVQSNSLTALPETLP--PGLKTLEAGENALT 338
>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies). Leucine rich
repeats are short sequence motifs present in a number of
proteins with diverse functions and cellular locations.
These repeats are usually involved in protein-protein
interactions. Each Leucine Rich Repeat is composed of a
beta-alpha unit. These units form elongated non-globular
structures. Leucine Rich Repeats are often flanked by
cysteine rich domains.
Length = 43
Score = 41.7 bits (99), Expect = 4e-05
Identities = 19/43 (44%), Positives = 31/43 (72%), Gaps = 1/43 (2%)
Query: 439 TSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLS 481
T+L+ L+ N++T++P L NL +L+TLDL N IT+++ LS
Sbjct: 1 TNLETLDLSNNQITDLPP-LSNLPNLETLDLSGNKITDLSPLS 42
Score = 37.1 bits (87), Expect = 0.002
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 368 RLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIES 408
L+ L L NNQI + ++L NL TL +S NK+ +
Sbjct: 2 NLETLDLSNNQITDL--PPLSNLPNLETLDLSGNKITDLSP 40
Score = 35.9 bits (84), Expect = 0.005
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 876 NLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSF 914
NL L L N+I + +L +L+ L L N+IT
Sbjct: 2 NLETLDLSNNQITDLPP--LSNLPNLETLDLSGNKITDL 38
Score = 33.6 bits (78), Expect = 0.027
Identities = 19/39 (48%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 222 NLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFL 260
NL LDLSNN LP S L L+ L L GN +T L
Sbjct: 2 NLETLDLSNNQITDLPP--LSNLPNLETLDLSGNKITDL 38
Score = 33.6 bits (78), Expect = 0.032
Identities = 17/41 (41%), Positives = 27/41 (65%), Gaps = 2/41 (4%)
Query: 462 HSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNIS 502
+L+TLDL +N IT++ LS +L L L L+ N I+++S
Sbjct: 1 TNLETLDLSNNQITDLPPLS--NLPNLETLDLSGNKITDLS 39
Score = 32.8 bits (76), Expect = 0.049
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 392 NLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEE 432
NL TL +SNN++ + L +L L L L N++ +
Sbjct: 2 NLETLDLSNNQITDL--PPLSNLPNLETLDLSGNKITDLSP 40
Score = 32.1 bits (74), Expect = 0.11
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 851 KELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISN 892
L L L +N++T++ L NL L L NKI +S
Sbjct: 1 TNLETLDLSNNQITDLP--PLSNLPNLETLDLSGNKITDLSP 40
Score = 31.7 bits (73), Expect = 0.14
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 246 RLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPP 286
L+ L L N +T L L L +L L+LS N + ++ P
Sbjct: 2 NLETLDLSNNQITDL--PPLSNLPNLETLDLSGNKITDLSP 40
Score = 30.9 bits (71), Expect = 0.27
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 512 LTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGL 552
L L+L++N+I + N NL + L GN +TD+ L
Sbjct: 3 LETLDLSNNQITDLPP--LSNLPNLETLDLSGNKITDLSPL 41
Score = 30.2 bits (69), Expect = 0.44
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 415 TALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIP 455
T L L L NN++ + L N +L+ L+GNK+T++
Sbjct: 1 TNLETLDLSNNQITDLPP--LSNLPNLETLDLSGNKITDLS 39
Score = 30.2 bits (69), Expect = 0.44
Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 343 HRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESI 382
L L+++ N++ L +L L+ L L N+I +
Sbjct: 1 TNLETLDLSNNQITDLPP--LSNLPNLETLDLSGNKITDL 38
Score = 30.2 bits (69), Expect = 0.51
Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query: 167 QSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNV 206
+LE+LDLS N I LP L +L L+L+ NK++++
Sbjct: 1 TNLETLDLSNNQITDLPP--LSNLPNLETLDLSGNKITDL 38
Score = 29.8 bits (68), Expect = 0.70
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 295 LKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTE 331
L+ + L NN I L P + N L L LDLS N++T+
Sbjct: 3 LETLDLSNNQITDL-PPLSN-LPNLETLDLSGNKITD 37
Score = 27.8 bits (63), Expect = 3.2
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Query: 317 TQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDS 360
T L LDLSNN++T+ + S L L L+++ NK+ L
Sbjct: 1 TNLETLDLSNNQITD--LPP--LSNLPNLETLDLSGNKITDLSP 40
Score = 27.8 bits (63), Expect = 3.4
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 535 NLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLE 570
NL + L N +TD+ L LPNL L++S N +
Sbjct: 2 NLETLDLSNNQITDLPPLS-NLPNLETLDLSGNKIT 36
Score = 27.5 bits (62), Expect = 3.9
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 491 LRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEA 527
L L+ N I+++ L L L+L+ NKI +
Sbjct: 6 LDLSNNQITDLPP--LSNLPNLETLDLSGNKITDLSP 40
Score = 26.7 bits (60), Expect = 7.7
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 581 LQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTG 621
L+ LD+ NQI++L + + L D S NK+T+L+
Sbjct: 3 LETLDLSNNQITDLP---PLSNLPNLETLDLSGNKITDLSP 40
Score = 26.7 bits (60), Expect = 8.8
Identities = 9/42 (21%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 827 KKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRG 868
L+ L L+++ + + + L L L L N++T++
Sbjct: 1 TNLETLDLSNNQITDLPP--LSNLPNLETLDLSGNKITDLSP 40
>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional.
Length = 623
Score = 46.3 bits (110), Expect = 9e-05
Identities = 31/94 (32%), Positives = 47/94 (50%), Gaps = 3/94 (3%)
Query: 372 LHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIE 431
L L+N + N + L +L ++ +S N ++ SL S+T+L VL L N
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482
Query: 432 ENALKNSTSLQDFHLNGNKLT-EIPKVL--RNLH 462
+L TSL+ +LNGN L+ +P L R LH
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALGGRLLH 516
Score = 41.0 bits (96), Expect = 0.004
Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 7/87 (8%)
Query: 182 LPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGF 241
+P+ I L+ L +NL+ N + S + + L VLDLS NSF+ E
Sbjct: 434 IPNDI-SKLRHLQSINLSGNSIRGNIPPSLGSITS------LEVLDLSYNSFNGSIPESL 486
Query: 242 SRLSRLQELYLQGNILTFLADHALDGL 268
+L+ L+ L L GN L+ AL G
Sbjct: 487 GQLTSLRILNLNGNSLSGRVPAALGGR 513
Score = 38.6 bits (90), Expect = 0.020
Identities = 20/62 (32%), Positives = 31/62 (50%)
Query: 366 LYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNN 425
L LQ ++L N I + S+++L L +S N SL LT+L +L+L+ N
Sbjct: 441 LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGN 500
Query: 426 EL 427
L
Sbjct: 501 SL 502
Score = 37.1 bits (86), Expect = 0.070
Identities = 26/86 (30%), Positives = 37/86 (43%)
Query: 226 LDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIP 285
L L N S+L LQ + L GN + +L + SL VL+LS N+
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482
Query: 286 PELFNQSRDLKEVYLQNNSINVLAPG 311
PE Q L+ + L NS++ P
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPA 508
Score = 32.9 bits (75), Expect = 1.4
Identities = 32/102 (31%), Positives = 39/102 (38%), Gaps = 25/102 (24%)
Query: 420 LSLDNNELEYIEENALKNSTSLQDFHLNGNKLT-EIPKVLRNLHSLKTLDLGDNLITEIN 478
L LDN L N + LQ +L+GN + IP L ++ SL+ LDL N N
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYN---SFN 479
Query: 479 NLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASN 520
SL QL LR ILNL N
Sbjct: 480 GSIPESLGQLTSLR---------------------ILNLNGN 500
Score = 32.5 bits (74), Expect = 1.8
Identities = 19/56 (33%), Positives = 24/56 (42%)
Query: 274 LNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNEL 329
L L L P ++ R L+ + L NSI P +T L VLDLS N
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF 478
Score = 32.1 bits (73), Expect = 2.5
Identities = 28/78 (35%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Query: 268 LNSLTVLNLSVNNLV-NIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSN 326
L L +NLS N++ NIPP L + + L+ + L NS N P LT L +L+L+
Sbjct: 441 LRHLQSINLSGNSIRGNIPPSLGSIT-SLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499
Query: 327 NELTEEWVNAATFSGLHR 344
N L+ A LHR
Sbjct: 500 NSLSGRVPAALGGRLLHR 517
Score = 30.6 bits (69), Expect = 6.9
Identities = 24/66 (36%), Positives = 30/66 (45%), Gaps = 13/66 (19%)
Query: 168 SLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLS------------NVATFSFSNYD 215
SLE LDLS NS L SL LNL N LS + A+F+F++ +
Sbjct: 467 SLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTD-N 525
Query: 216 TARCGI 221
CGI
Sbjct: 526 AGLCGI 531
>gnl|CDD|205486 pfam13306, LRR_5, Leucine rich repeats (6 copies). This family
includes a number of leucine rich repeats. This family
contains a large number of BSPA-like surface antigens
from Trichomonas vaginalis.
Length = 128
Score = 40.2 bits (95), Expect = 0.001
Identities = 24/104 (23%), Positives = 53/104 (50%), Gaps = 6/104 (5%)
Query: 377 NQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALK 436
+ + SI F+ ++L ++ + ++ L I S + + ++L+ +++ ++ L I E A
Sbjct: 20 SSVTSIGEYAFSGCTSLKSITLPSS-LTSIGSYAFYNCSSLTSITIPSS-LTSIGEYAFS 77
Query: 437 NSTSLQDFHLNGNKLTEIPK-VLRNLHSLKTLDLGDNLITEINN 479
N +SL + + LT I N SLK++ + + +T I +
Sbjct: 78 NCSSLTSITIP-SNLTTIGSYAFSNC-SLKSITIPSS-VTTIGD 118
Score = 37.1 bits (87), Expect = 0.011
Identities = 23/103 (22%), Positives = 51/103 (49%), Gaps = 5/103 (4%)
Query: 339 FSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIM 398
FSG L + + + + + S F + L + + ++ + SI F++ S+L ++ +
Sbjct: 30 FSGCTSLKSITL-PSSLTSIGSYAFYNCSSLTSITIPSS-LTSIGEYAFSNCSSLTSITI 87
Query: 399 SNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSL 441
+N L I S + S +L +++ ++ + I + A N +SL
Sbjct: 88 PSN-LTTIGSYAF-SNCSLKSITIPSS-VTTIGDYAFSNCSSL 127
Score = 34.0 bits (79), Expect = 0.13
Identities = 27/124 (21%), Positives = 58/124 (46%), Gaps = 8/124 (6%)
Query: 428 EYIEENALKNSTSLQDFHLNGNKLTEIPK-VLRNLHSLKTLDLGDNLITEINNLSLNSLH 486
I + A N SL + + +T I + SLK++ L +L T I + + +
Sbjct: 1 TSIGDYAFYN-CSLTSITIP-SSVTSIGEYAFSGCTSLKSITLPSSL-TSIGSYAFYNCS 57
Query: 487 QLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYL 546
L + + +++++I + F S LT + + + + + + F +N +L +I + + +
Sbjct: 58 SLTSITI-PSSLTSIGEYAFSNCSSLTSITI-PSNLTTIGSYAF-SNCSLKSITIPSS-V 113
Query: 547 TDIG 550
T IG
Sbjct: 114 TTIG 117
Score = 30.6 bits (70), Expect = 2.0
Identities = 29/129 (22%), Positives = 59/129 (45%), Gaps = 12/129 (9%)
Query: 168 SLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLD 227
SL S+ + +S+ ++ + F SL + L + L+++ +++F N C +L +
Sbjct: 12 SLTSITIP-SSVTSIGEYAFSGCTSLKSITLPSS-LTSIGSYAFYN-----C-SSLTSIT 63
Query: 228 LSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPE 287
+ + S S+ FS S L + + N LT + +A SL + + +++ I
Sbjct: 64 IPS-SLTSIGEYAFSNCSSLTSITIPSN-LTTIGSYAFSN-CSLKSITIP-SSVTTIGDY 119
Query: 288 LFNQSRDLK 296
F+ LK
Sbjct: 120 AFSNCSSLK 128
>gnl|CDD|177648 PHA03420, PHA03420, E4 protein; Provisional.
Length = 137
Score = 39.6 bits (92), Expect = 0.002
Identities = 16/76 (21%), Positives = 27/76 (35%), Gaps = 7/76 (9%)
Query: 1192 IRLYLKSNTYLQWGDKLFWEKLKFALPDVPNNQRNNNNRNQVRHLNHSAHHHNHNHRH-- 1249
+ LYL + W D ++ +L + + QR N ++ H+H HRH
Sbjct: 3 VHLYLAPPLHHPW-DTPYYRRLLDGRAENQHIQREGGNHRTWDPADYLDRPHHHPHRHQQ 61
Query: 1250 ----HQHHHNNTSQEK 1261
Q + Q
Sbjct: 62 DDHHLQDRQHLPQQHL 77
Score = 30.0 bits (67), Expect = 4.3
Identities = 6/27 (22%), Positives = 9/27 (33%), Gaps = 1/27 (3%)
Query: 1229 NRNQVRHLNHSAHHHNH-NHRHHQHHH 1254
+R+Q + H H HH
Sbjct: 57 HRHQQDDHHLQDRQHLPQQHLQRPHHP 83
>gnl|CDD|185285 PRK15387, PRK15387, E3 ubiquitin-protein ligase SspH2; Provisional.
Length = 788
Score = 42.1 bits (98), Expect = 0.002
Identities = 83/310 (26%), Positives = 132/310 (42%), Gaps = 61/310 (19%)
Query: 172 LDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNN 231
L++ + + TLPD C ++ L + N L+++ LR L++S N
Sbjct: 206 LNVGESGLTTLPD---CLPAHITTLVIPDNNLTSLPALP----------PELRTLEVSGN 252
Query: 232 SFDSLPAEGFSRLSRLQELYLQGNILTFLADHAL-DGLNSLTVLNLSVNNLVNIPPELFN 290
SLP L EL + N LT L AL GL L + + +L +PP
Sbjct: 253 QLTSLPVLP----PGLLELSIFSNPLTHLP--ALPSGLCKLWIFGNQLTSLPVLPP---- 302
Query: 291 QSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNI 350
L+E+ + +N + L P + + L +L NN+LT SGL L V +
Sbjct: 303 ---GLQELSVSDNQLASL-PALPSELCKLWAY---NNQLTSL---PTLPSGLQELSVSDN 352
Query: 351 AYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNS 410
+ L S ++K L NN++ S+ A S L LI+S N+L
Sbjct: 353 QLASLPTLPSELYK-------LWAYNNRLTSLP----ALPSGLKELIVSGNRL------- 394
Query: 411 LDSLTALSVLSLDNNELEYIEENALKN----STSLQDFHLNGNKLTEIPKVLRNLHSLKT 466
T+L VL + EL + N L + + L + N+LT +P+ L +L S T
Sbjct: 395 ----TSLPVLPSELKEL-MVSGNRLTSLPMLPSGLLSLSVYRNQLTRLPESLIHLSSETT 449
Query: 467 LDLGDNLITE 476
++L N ++E
Sbjct: 450 VNLEGNPLSE 459
>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P. syringae 6; Provisional.
Length = 1153
Score = 41.4 bits (97), Expect = 0.003
Identities = 55/226 (24%), Positives = 104/226 (46%), Gaps = 31/226 (13%)
Query: 294 DLKEVY--LQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIA 351
D K++ L++N+ G VL I LD+ +E+ E ++ F G+ L+ L
Sbjct: 517 DAKDICDVLEDNT------GTKKVLG--ITLDI--DEIDELHIHENAFKGMRNLLFLKFY 566
Query: 352 YNKMNKLD------SSIFKDL-YRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLK 404
K ++ F L +L++L + + + N NL L M +KL+
Sbjct: 567 TKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRP--ENLVKLQMQGSKLE 624
Query: 405 RIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNG-NKLTEIPKVLRNLHS 463
++ + + SLT L + L ++ E L +T+L+ L+ + L E+P ++ L+
Sbjct: 625 KL-WDGVHSLTGLRNIDLRGSK-NLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNK 682
Query: 464 LKTLDLG--DNLITEINNLSLNSLHQL-----AGLRLTENNISNIS 502
L+ LD+ +NL ++L SL++L + L+ + +NIS
Sbjct: 683 LEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDISTNIS 728
Score = 37.2 bits (86), Expect = 0.065
Identities = 64/270 (23%), Positives = 106/270 (39%), Gaps = 45/270 (16%)
Query: 382 IHRNTFASLSNLHTLIMSNNKLKRIE------SNSLDSL-TALSVLSLDNNELEYIEENA 434
IH N F + NL L K + + D L L +L D L + N
Sbjct: 549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF 608
Query: 435 LKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDL-GDNLITEINNLSLNSLHQLAGLRL 493
+L + G+KL ++ + +L L+ +DL G + EI +LS+ + L
Sbjct: 609 --RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMAT-------NL 659
Query: 494 TENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNL-VAIRLDGNYLTDIGGL 552
+S+ S V +L +I L NK++ ++ +N L I L Y ++ G
Sbjct: 660 ETLKLSDCSSLV--ELP-SSIQYL--NKLEDLDMSRCENLEILPTGINLKSLYRLNLSGC 714
Query: 553 FPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDAS 612
+L + +IS N+ WLD+ I E + +E+ L +
Sbjct: 715 -SRLK--SFPDISTNI-------------SWLDLDETAIEEFPSNLRLENLDELILCEMK 758
Query: 613 SNKLTE----LTG--NAIPHSVENLFLTNN 636
S KL E LT + S+ LFL++
Sbjct: 759 SEKLWERVQPLTPLMTMLSPSLTRLFLSDI 788
>gnl|CDD|218619 pfam05510, Sarcoglycan_2, Sarcoglycan alpha/epsilon. Sarcoglycans
are a subcomplex of transmembrane proteins which are part
of the dystrophin-glycoprotein complex. They are
expressed in the skeletal, cardiac and smooth muscle.
Although numerous studies have been conducted on the
sarcoglycan subcomplex in skeletal and cardiac muscle,
the manner of the distribution and localisation of these
proteins along the nonjunctional sarcolemma is not clear.
This family contains alpha and epsilon members.
Length = 398
Score = 39.4 bits (92), Expect = 0.010
Identities = 35/148 (23%), Positives = 53/148 (35%), Gaps = 23/148 (15%)
Query: 946 YLQRSRSSVHDISQIRCMTGSEVGFTIMRTVIPS-----CNVVSTNVSSHSNNN------ 994
+ R + VH + + C G T + P CN ++SS
Sbjct: 200 FSPRLKELVHPLQTLSCSQGRTPVQTCFKKFAPQFKVDWCNFSLVDLSSLEGEGIDEGIK 259
Query: 995 -NNTTTTTTTTTIFIPEHSPMNGSFILSELQPQQDY------VFLLIILVSASFVLVLLL 1047
+ I H P EL P +DY F + +LV +LVLLL
Sbjct: 260 PKEEEPLSKANGDGILFHDPEYA--PPRELVPYRDYGDEFVVTFAIPLLVFL--LLVLLL 315
Query: 1048 ILIIIYRQEMRVWFHSRF-GVRLFYKSS 1074
I+ +++E R SR +L + SS
Sbjct: 316 AYIMCFQREGRKKRDSRTSDSQLVHHSS 343
>gnl|CDD|221751 pfam12749, Metallothio_Euk, Eukaryotic metallothionein. This is a
family of eukaryotic metallothioneins.
Length = 70
Score = 34.8 bits (79), Expect = 0.024
Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Query: 751 CAPLCHCCDFDACDCEMTCP-NNCTCYHDVSWEANVIDCSTGGYDN 795
C C DACDC+ C ++C C S + V DC G +
Sbjct: 20 SEKCCKCGQGDACDCQSKCGCSDCKCGCKCS-SSAVDDCKCTGPTS 64
Score = 33.2 bits (75), Expect = 0.079
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 3/34 (8%)
Query: 745 CEYETNCAPL---CHCCDFDACDCEMTCPNNCTC 775
C+ + C+ C C DC+ T P +C C
Sbjct: 34 CQSKCGCSDCKCGCKCSSSAVDDCKCTGPTSCKC 67
>gnl|CDD|236641 PRK10019, PRK10019, nickel/cobalt efflux protein RcnA; Provisional.
Length = 279
Score = 37.8 bits (88), Expect = 0.028
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 1225 RNNNNRNQVRHLNHSAHHHNHNHRHHQHHHNNTSQEK 1261
R N + H + H H+H+H HH H ++ E
Sbjct: 111 RGERNWLENMHHHDHDHDHDHDHEHHHDHGHHHHHEH 147
Score = 37.1 bits (86), Expect = 0.046
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 1223 NQRNNNNRNQVRHLNHSAHHHNHNHRHHQHHHN 1255
+ N + H + H H H+H H HHH+
Sbjct: 113 ERNWLENMHHHDHDHDHDHDHEHHHDHGHHHHH 145
Score = 36.7 bits (85), Expect = 0.057
Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Query: 1229 NRNQVRHLNHSAHHHNHNHRH---HQHHHNNTSQEKIP 1263
RN + +++H H H+H+H H H H H++ +
Sbjct: 113 ERNWLENMHHHDHDHDHDHDHEHHHDHGHHHHHEHGAT 150
Score = 33.6 bits (77), Expect = 0.61
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 1235 HLNHSAHHHNHNHRHHQHH-HNNTSQE 1260
H + H H+H+H HH HH H T++E
Sbjct: 127 HDHDHDHEHHHDHGHHHHHEHGATAEE 153
Score = 32.8 bits (75), Expect = 1.0
Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 1230 RNQVRHLNHSAHH-HNHNHRHHQHHHNNTSQEKIPGMGISS 1269
R + L + HH H+H+H H HH++ G ++
Sbjct: 111 RGERNWLENMHHHDHDHDHDHDHEHHHDHGHHHHHEHGATA 151
>gnl|CDD|214470 smart00013, LRRNT, Leucine rich repeat N-terminal domain.
Length = 33
Score = 33.1 bits (76), Expect = 0.038
Identities = 12/39 (30%), Positives = 16/39 (41%), Gaps = 7/39 (17%)
Query: 769 CPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATE 807
CP C C +DCS G ++P +P D T
Sbjct: 2 CPAPCNC------SGTAVDCSGRG-LTEVPLDLPPDTTL 33
>gnl|CDD|214507 smart00082, LRRCT, Leucine rich repeat C-terminal domain.
Length = 51
Score = 33.2 bits (76), Expect = 0.046
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 689 NPFQCDCNMQWLQSYSVNKER 709
NPF CDC ++WL + E
Sbjct: 1 NPFICDCELRWLLRWLQANEH 21
Score = 29.3 bits (66), Expect = 1.1
Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 931 NPWSCDCDFTEKFRDYLQRSRSSVHDISQIRCMTGSEV 968
NP+ CDC+ +LQ + + D +RC + S +
Sbjct: 1 NPFICDCELRW-LLRWLQANE-HLQDPVDLRCASPSSL 36
>gnl|CDD|218163 pfam04592, SelP_N, Selenoprotein P, N terminal region. SelP is the
only known eukaryotic selenoprotein that contains
multiple selenocysteine (Sec) residues, and accounts for
more than 50% of the selenium content of rat and human
plasma. It is thought to be glycosylated. SelP may have
antioxidant properties. It can attach to epithelial
cells, and may protect vascular endothelial cells against
peroxynitrite toxicity. The high selenium content of SelP
suggests that it may be involved in selenium
intercellular transport or storage. The promoter
structure of bovine SelP suggest that it may be involved
in countering heavy metal intoxication, and may also have
a developmental function. The N-terminal region of SelP
can exist independently of the C terminal region.
Zebrafish selenoprotein Pb lacks the C terminal Sec-rich
region, and a protein encoded by the rat SelP gene and
lacking this region has also been reported. N-terminal
region contains a conserved SecxxCys motif, which is
similar to the CysxxCys found in thioredoxins. It is
speculated that the N terminal region may adopt a
thioredoxin fold and catalyze redox reactions. The
N-terminal region also contains a His-rich region, which
is thought to mediate heparin binding. Binding to heparan
proteoglycans could account for the membrane binding
properties of SelP. The function of the bacterial members
of this family is uncharcterised.
Length = 238
Score = 35.6 bits (82), Expect = 0.12
Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 4/49 (8%)
Query: 1222 NNQRNNNNRNQVRHLNHSAHH----HNHNHRHHQHHHNNTSQEKIPGMG 1266
+ + H +H +HH H H+H H HH + S +
Sbjct: 172 TVNKPVEAEPRQDHPHHHSHHEHQGHAHHHPHGHHHPGSNSHSESQQPD 220
Score = 34.9 bits (80), Expect = 0.22
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 1235 HLNHSAHHHNHNHRHHQHHHNNTSQEKIPGMG 1266
H H H H+H H HH N+ S+ + P
Sbjct: 191 HHEHQGHAHHHPHGHHHPGSNSHSESQQPDPD 222
Score = 30.2 bits (68), Expect = 5.1
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 1234 RHLNHSAHHHNHNHRHHQHHHNNTSQEKIPG 1264
AHHH H H H + ++ SQ+ P
Sbjct: 192 HEHQGHAHHHPHGHHHPGSNSHSESQQPDPD 222
>gnl|CDD|197688 smart00370, LRR, Leucine-rich repeats, outliers.
Length = 24
Score = 31.2 bits (72), Expect = 0.13
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 366 LYRLQVLHLENNQIESIHRNTFAS 389
L L+ L L NNQ+ S+ F
Sbjct: 1 LPNLRELDLSNNQLSSLPPGAFQG 24
Score = 30.8 bits (71), Expect = 0.17
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 166 LQSLESLDLSMNSIWTLPDAIF 187
L +L LDLS N + +LP F
Sbjct: 1 LPNLRELDLSNNQLSSLPPGAF 22
Score = 30.0 bits (69), Expect = 0.39
Identities = 13/21 (61%), Positives = 13/21 (61%)
Query: 222 NLRVLDLSNNSFDSLPAEGFS 242
NLR LDLSNN SLP F
Sbjct: 3 NLRELDLSNNQLSSLPPGAFQ 23
Score = 28.1 bits (64), Expect = 1.6
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 268 LNSLTVLNLSVNNLVNIPPELFN 290
L +L L+LS N L ++PP F
Sbjct: 1 LPNLRELDLSNNQLSSLPPGAFQ 23
>gnl|CDD|197687 smart00369, LRR_TYP, Leucine-rich repeats, typical (most populated)
subfamily.
Length = 24
Score = 31.2 bits (72), Expect = 0.13
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 366 LYRLQVLHLENNQIESIHRNTFAS 389
L L+ L L NNQ+ S+ F
Sbjct: 1 LPNLRELDLSNNQLSSLPPGAFQG 24
Score = 30.8 bits (71), Expect = 0.17
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 166 LQSLESLDLSMNSIWTLPDAIF 187
L +L LDLS N + +LP F
Sbjct: 1 LPNLRELDLSNNQLSSLPPGAF 22
Score = 30.0 bits (69), Expect = 0.39
Identities = 13/21 (61%), Positives = 13/21 (61%)
Query: 222 NLRVLDLSNNSFDSLPAEGFS 242
NLR LDLSNN SLP F
Sbjct: 3 NLRELDLSNNQLSSLPPGAFQ 23
Score = 28.1 bits (64), Expect = 1.6
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 268 LNSLTVLNLSVNNLVNIPPELFN 290
L +L L+LS N L ++PP F
Sbjct: 1 LPNLRELDLSNNQLSSLPPGAFQ 23
>gnl|CDD|240575 cd12960, Spider_toxin, Spider neurotoxins including agatoxin,
purotoxin and ctenitoxin. This domain family contains
spider toxins that include the omega-Aga-IVB, a P-type
calcium channel antagonist from venom of the funnel web
spider, Agelenopsis aperta, as well as purotoxin-1
(PT1), a spider peptide venom of the Central Asian
spider Geolycosa sp., which specifically exerts
inhibitory action on P2X3 purinoreceptors at nanomolar
concentrations. These spider toxins, which are ion
channel blockers, share a common structural motif
composed of a triple-stranded antiparallel beta-sheet,
stabilized by internal disulfide bonds known as cystine
knots.
Length = 36
Score = 30.8 bits (70), Expect = 0.22
Identities = 11/33 (33%), Positives = 13/33 (39%), Gaps = 9/33 (27%)
Query: 751 CAPL---C-----HCCDFDACDCEMTCPNNCTC 775
CA L C CC+ C C + NC C
Sbjct: 2 CAELYGKCDKGPTPCCEGRPCKCNLW-GTNCKC 33
>gnl|CDD|193258 pfam12782, Innate_immun, Invertebrate innate immunity transcript
family. The immune response of the purple sea urchin
appears to be more complex than previously believed in
that it uses immune-related gene families homologous to
vertebrate Toll-like and NOD/NALP-like receptor families
as well as C-type lectins and a rudimentary complement
system. In addition, the species also produces this
unusual family of mRNAs, also known as 185/333, which is
strongly upregulated in response to pathogen challenge.
Length = 312
Score = 34.2 bits (78), Expect = 0.37
Identities = 11/36 (30%), Positives = 14/36 (38%)
Query: 1221 PNNQRNNNNRNQVRHLNHSAHHHNHNHRHHQHHHNN 1256
P QRN ++ R H HH HNH +
Sbjct: 162 PFGQRNESSEEDGRPHPHHHRHHGHNHFGRKPFGGR 197
>gnl|CDD|236558 PRK09545, znuA, high-affinity zinc transporter periplasmic component;
Reviewed.
Length = 311
Score = 33.8 bits (78), Expect = 0.49
Identities = 6/20 (30%), Positives = 7/20 (35%)
Query: 1235 HLNHSAHHHNHNHRHHQHHH 1254
H + H H HHH
Sbjct: 121 HHDDDHDHAGHEKSDEDHHH 140
Score = 32.7 bits (75), Expect = 1.1
Identities = 9/39 (23%), Positives = 14/39 (35%)
Query: 1217 LPDVPNNQRNNNNRNQVRHLNHSAHHHNHNHRHHQHHHN 1255
LPDV + + + A H + HH +N
Sbjct: 106 LPDVKPLLMKGAHDDHHDDDHDHAGHEKSDEDHHHGEYN 144
Score = 30.4 bits (69), Expect = 6.4
Identities = 5/19 (26%), Positives = 6/19 (31%)
Query: 1238 HSAHHHNHNHRHHQHHHNN 1256
H H + H H N
Sbjct: 126 HDHAGHEKSDEDHHHGEYN 144
>gnl|CDD|233247 TIGR01047, nspC, carboxynorspermidine decarboxylase. This protein
is related to diaminopimelate decarboxylase. It is the
last enzyme in norspermidine biosynthesis by an unusual
pathway shown in Vibrio alginolyticus [Central
intermediary metabolism, Polyamine biosynthesis].
Length = 380
Score = 33.6 bits (77), Expect = 0.60
Identities = 30/124 (24%), Positives = 48/124 (38%), Gaps = 32/124 (25%)
Query: 778 DVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIP--------------------V 817
DVS+EA++ D Y P + + A + N V
Sbjct: 262 DVSFEAHMPDTLEMPY----RPEV-LGARDPATRENEEISDKEGEFSYLLGGNTCLAGDV 316
Query: 818 VGSHSFIGRKKLQ----ILFLNSSHVETIHNKTFNGLKELIILRLD-DNRLTEIRGYEFE 872
+G ++F K L+ I+FL+ H + N TFNG+K + L IR + +E
Sbjct: 317 MGEYAF--DKPLKVGDKIVFLDMIHYTMVKNTTFNGVKLPSLGCLRAKGEFQMIRTFGYE 374
Query: 873 RLEN 876
+N
Sbjct: 375 DYKN 378
>gnl|CDD|188093 TIGR00864, PCC, polycystin cation channel protein. The Polycystin
Cation Channel (PCC) Family (TC 1.A.5) Polycystin is a
huge protein of 4303aas. Its repeated leucine-rich (LRR)
segment is found in many proteins. It contains 16
polycystic kidney disease (PKD) domains, one
LDL-receptor class A domain, one C-type lectin family
domain, and 16-18 putative TMSs in positions between
residues 2200 and 4100. Polycystin-L has been shown to
be a cation (Na+, K+ and Ca2+) channel that is activated
by Ca2+. Two members of the PCC family (polycystin 1 and
2) are mutated in autosomal dominant polycystic kidney
disease, and polycystin-L is deleted in mice with renal
and retinal defects. Note: this model is restricted to
the amino half for technical reasons.
Length = 2740
Score = 33.9 bits (77), Expect = 0.80
Identities = 17/76 (22%), Positives = 27/76 (35%), Gaps = 29/76 (38%)
Query: 633 LTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHKNIPDFYIGENPFQ 692
++NN IS ++ NL+ +DL GN PF+
Sbjct: 2 ISNNKISTIEEGICANLCNLSEIDLSGN-----------------------------PFE 32
Query: 693 CDCNMQWLQSYSVNKE 708
CDC + L ++ K
Sbjct: 33 CDCGLARLPRWAEEKG 48
Score = 31.6 bits (71), Expect = 3.7
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 516 NLASNKIQKVEAGTFDNNSNLVAIRLDGN 544
++++NKI +E G N NL I L GN
Sbjct: 1 DISNNKISTIEEGICANLCNLSEIDLSGN 29
>gnl|CDD|237323 PRK13263, ureE, urease accessory protein UreE; Provisional.
Length = 206
Score = 32.8 bits (75), Expect = 0.80
Identities = 8/23 (34%), Positives = 10/23 (43%)
Query: 1232 QVRHLNHSAHHHNHNHRHHQHHH 1254
Q H H H+H+ H H H
Sbjct: 165 QQVFHEHHGHSHSHSDHDHDHDH 187
Score = 31.3 bits (71), Expect = 2.5
Identities = 11/26 (42%), Positives = 13/26 (50%), Gaps = 9/26 (34%)
Query: 1238 HSAHHHNHNHRH---------HQHHH 1254
HS H H+H+H H H HHH
Sbjct: 178 HSDHDHDHDHDHDHVHGPGCGHGHHH 203
>gnl|CDD|177556 PHA03195, PHA03195, tegument protein VP11/12; Provisional.
Length = 746
Score = 33.4 bits (76), Expect = 0.82
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 538 AIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYAL 576
A+R G + +G L P + L W N+ + + WF YAL
Sbjct: 352 ALRSQGRFDHFVGKLVPIMATLSWANMEKGTVMWFKYAL 390
>gnl|CDD|225826 COG3288, PntA, NAD/NADP transhydrogenase alpha subunit [Energy
production and conversion].
Length = 356
Score = 33.1 bits (76), Expect = 0.97
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 10/45 (22%)
Query: 765 CEMTCPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELY 809
CE+T P + V +I GY N LP R+ A++LY
Sbjct: 288 CELTEPGKVVTKNGV----KII-----GYTN-LPGRLAAQASQLY 322
>gnl|CDD|221023 pfam11198, DUF2857, Protein of unknown function (DUF2857). This is
a bacterial family of uncharacterized proteins.
Length = 181
Score = 31.9 bits (73), Expect = 1.1
Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
Query: 446 LNGNKLTEIPKVLR--NLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISK 503
LN LT+ LR N+ + + + LSL+ L+ LA ++ +S I
Sbjct: 2 LNQAVLTQALHDLREGNIRRCLAMGFSPEELDALQQLSLDDLYDLANSSVSWVKVS-IDH 60
Query: 504 GVFEKL 509
V +L
Sbjct: 61 EVLWRL 66
>gnl|CDD|215173 PLN02304, PLN02304, probable pectinesterase.
Length = 379
Score = 32.9 bits (75), Expect = 1.2
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 1241 HHHNHNHRHHQHHHNNTSQEK 1261
+ H+ +H H HHH+ +
Sbjct: 33 YPHSIHHHSHHHHHHKHPDDG 53
Score = 31.0 bits (70), Expect = 4.1
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 1241 HHHNHNHRHHQHHHNNTSQEKI 1262
H H+H HH HHH + K
Sbjct: 34 PHSIHHHSHHHHHHKHPDDGKK 55
Score = 30.2 bits (68), Expect = 7.0
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 1238 HSAHHHNHNHRHHQHHHNNTSQ 1259
+ H+H+H HH H H + +
Sbjct: 33 YPHSIHHHSHHHHHHKHPDDGK 54
>gnl|CDD|197684 smart00365, LRR_SD22, Leucine-rich repeat, SDS22-like subfamily.
Length = 22
Score = 28.4 bits (65), Expect = 1.4
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 461 LHSLKTLDLGDNLITEINNLS 481
L +L+ LDLGDN I +I NL
Sbjct: 1 LTNLEELDLGDNKIKKIENLD 21
>gnl|CDD|113452 pfam04684, BAF1_ABF1, BAF1 / ABF1 chromatin reorganising factor.
ABF1 is a sequence-specific DNA binding protein involved
in transcription activation, gene silencing and
initiation of DNA replication. ABF1 is known to remodel
chromatin, and it is proposed that it mediates its
effects on transcription and gene expression by modifying
local chromatin architecture. These functions require a
conserved stretch of 20 amino acids in the C-terminal
region of ABF1 (amino acids 639 to 662 S. cerevisiae).
The N-terminal two thirds of the protein are necessary
for DNA binding, and the N-terminus (amino acids 9 to 91
in S. cerevisiae) is thought to contain a novel
zinc-finger motif which may stabilise the protein
structure.
Length = 508
Score = 32.4 bits (73), Expect = 1.9
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 1238 HSAHHHNHNHRHHQHHHNN 1256
HH ++ H HH HHH+N
Sbjct: 99 GGHHHGHNMHAHHHHHHHN 117
Score = 32.0 bits (72), Expect = 2.5
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 1237 NHSAHHHNHNHRHHQHHHNNTSQEKIPGMGIS 1268
H H+ H H HH HH+ +T+ + +
Sbjct: 100 GHHHGHNMHAHHHHHHHNGHTNGHGLAEDDRA 131
Score = 31.6 bits (71), Expect = 3.2
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 5/51 (9%)
Query: 1215 FALPDVPNNQRNNNNRNQVRHLNHSAHHHNH-----NHRHHQHHHNNTSQE 1260
+ALP+ +++++Q H HH H + HQHHH + Q+
Sbjct: 278 YALPNAHQISGADHHQHQHHHHPSIPAHHQHQLPEGHQHDHQHHHQHQQQD 328
>gnl|CDD|184826 PRK14799, thrS, threonyl-tRNA synthetase; Provisional.
Length = 545
Score = 32.1 bits (73), Expect = 1.9
Identities = 19/108 (17%), Positives = 41/108 (37%), Gaps = 16/108 (14%)
Query: 503 KGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWL 562
K V+ K +V+ +NL + V G + + + D+ K + L
Sbjct: 5 KPVWLKGAVILAINLIDKGYKPVAVGLGERD-----------FYIDV-----KSDTSITL 48
Query: 563 NISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFD 610
+ + + A + + + GN++S + + I + L YF+
Sbjct: 49 DEVKKAINENVLANVSIENNQIVYKGNKVSIIEDKVSISTNLNPKYFE 96
>gnl|CDD|232922 TIGR00331, hrcA, heat shock gene repressor HrcA. HrcA represses
the class I heat shock operons groE and dnaK;
overproduction prevents induction of these operons by
heat shock while deletion allows constitutive expression
even at low temperatures. In Bacillus subtilis, hrcA is
the first gene of the dnaK operon and so is itself a
heat shock gene [Regulatory functions, DNA
interactions].
Length = 337
Score = 31.9 bits (73), Expect = 2.0
Identities = 35/148 (23%), Positives = 63/148 (42%), Gaps = 27/148 (18%)
Query: 399 SNNKLKRIESNSLDSLTALSVLSLDNNELEY--------IEENALKNSTSLQDFHLNGNK 450
S +KLK IE LD AL+V+ D+ ++ I + L+ + ++ + L G
Sbjct: 128 SQDKLKHIELIPLDPNLALAVIVTDSGRVKNKVIELPANISQEDLERAVNILNDRLRGRT 187
Query: 451 LTEIP-KVLRNLHSLKT---------LDLGDNLITEINNLSLNS---LHQLAGLRLTENN 497
L+EI +++ L LK +DL ++ +E N L + L +
Sbjct: 188 LSEIREQIIELLSQLKIEIEEFEDELVDLIISIFSEFNEEELYVDGKSNLLEQPE-FFDP 246
Query: 498 ISNISKGVFEKLS----VLTILNLASNK 521
I I + + E L + +LN A ++
Sbjct: 247 IERIRE-LLELLESKKFLELLLNEALHE 273
>gnl|CDD|220076 pfam08937, DUF1863, MTH538 TIR-like domain (DUF1863). This domain
adopts the flavodoxin fold, that is, five parallel
beta-strands and four helical segments. The structure is
a three-layer sandwich with alpha-1 and alpha-4 on one
side of the beta-sheet, and alpha-2 and alpha-3 on the
other side. Probable role in signal transduction as a
phosphorylation-independent conformational switch
protein. This domain is similar to the TIR domain.
Length = 122
Score = 30.3 bits (69), Expect = 2.1
Identities = 21/115 (18%), Positives = 45/115 (39%), Gaps = 14/115 (12%)
Query: 1088 FVSYSSKDEAFVAEELAPILENGDPAYKLCLHYREF------PVGG----YIGDTIVQAV 1137
F+S+ +D+ + ++L + N + + F P+ YI I +
Sbjct: 4 FISFHHEDDVWRYDQLRNLGANEGINGAENIDFGFFDVNDWEPIKRPNDAYIKRWIRDQI 63
Query: 1138 ESSRRTIMVLSENFIKSEWCRYEFKSAHHQVLRGKKRLIVILLGEVPQKDLDPDI 1192
+ S TI+++ E +W +E + A + K ++ + L + D P
Sbjct: 64 KGSSVTIVLVGEETASRKWVDWEIEKALEK----GKGILGVNLHGLKDSDTCPPA 114
>gnl|CDD|238501 cd01019, ZnuA, Zinc binding protein ZnuA. These proteins have been
shown to function as initial receptors in the ABC uptake
of Zn2+. They belong to the TroA superfamily of
periplasmic metal binding proteins that share a distinct
fold and ligand binding mechanism. They are comprised of
two globular subdomains connected by a single helix and
bind their specific ligands in the cleft between these
domains. A typical TroA protein is comprised of two
globular subdomains connected by a single helix and can
bind the metal ion in the cleft between these domains. In
addition, these proteins sometimes have a low complexity
region containing a metal-binding histidine-rich motif
(repetitive HDH sequence).
Length = 286
Score = 31.6 bits (72), Expect = 2.2
Identities = 6/21 (28%), Positives = 7/21 (33%)
Query: 1234 RHLNHSAHHHNHNHRHHQHHH 1254
S H H+H H H
Sbjct: 91 LEDGASHGDHEHDHEHAHGEH 111
>gnl|CDD|220924 pfam10986, DUF2796, Protein of unknown function (DUF2796). This
bacterial family of proteins has no known function.
Length = 161
Score = 30.7 bits (70), Expect = 2.4
Identities = 10/47 (21%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 1215 FALPDVPN-NQRNNNNRNQVRHLNHSAHHHNHNHRHHQHHHNNTSQE 1260
FALP + + + + HH + +H HH H + +
Sbjct: 61 FALPPAAGCTLTEVSLESSLFGDHDHDHHDHDHHDHHDDHEHAGHSD 107
>gnl|CDD|222697 pfam14345, GDYXXLXY, GDYXXLXY protein. This family of proteins is
functionally uncharacterized. This family of proteins is
found in bacteria, archaea and eukaryotes. Proteins in
this family are typically between 171 and 199 amino
acids in length. It contains a conserved GDYXXLXY motif.
Length = 148
Score = 30.7 bits (70), Expect = 2.5
Identities = 11/50 (22%), Positives = 22/50 (44%), Gaps = 6/50 (12%)
Query: 854 IILRLDDNRLTEIRGYEFERLENLR--ELYLQY----NKIIYISNRTFLS 897
+IL+LD++ + ER + L E+ L+ ++ Y R +
Sbjct: 69 VILKLDEDGVARAVRVSLERPKPLAPGEVALRGRVRGGRVKYGIERYYFP 118
>gnl|CDD|238500 cd01018, ZntC, Metal binding protein ZntC. These proteins are
predicted to function as initial receptors in ABC
transport of metal ions. They belong to the TroA
superfamily of helical backbone metal receptor proteins
that share a distinct fold and ligand binding mechanism.
They are comprised of two globular subdomains connected
by a long alpha helix and bind their specific ligands in
the cleft between these domains. In addition, many of
these proteins possess a metal-binding histidine-rich
motif (repetitive HDH sequence).
Length = 266
Score = 31.2 bits (71), Expect = 2.9
Identities = 8/19 (42%), Positives = 9/19 (47%)
Query: 1237 NHSAHHHNHNHRHHQHHHN 1255
HHH+H H HH N
Sbjct: 91 MADHHHHHHGEHEHHHHGN 109
>gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein;
Provisional.
Length = 260
Score = 31.1 bits (71), Expect = 2.9
Identities = 12/17 (70%), Positives = 13/17 (76%)
Query: 1065 FGVRLFYKSSEIEMDDR 1081
FGVRLF K S EMD+R
Sbjct: 116 FGVRLFEKLSRAEMDER 132
>gnl|CDD|237322 PRK13261, ureE, urease accessory protein UreE; Provisional.
Length = 159
Score = 30.7 bits (70), Expect = 2.9
Identities = 5/17 (29%), Positives = 6/17 (35%)
Query: 1238 HSAHHHNHNHRHHQHHH 1254
A+ H H H H
Sbjct: 141 RGAYGGAFRHHGHSHDH 157
>gnl|CDD|148805 pfam07406, NICE-3, NICE-3 protein. This family consists of several
eukaryotic NICE-3 and related proteins. The gene coding
for NICE-3 is part of the epidermal differentiation
complex (EDC) which comprises a large number of genes
that are of crucial importance for the maturation of the
human epidermis. The function of NICE-3 is unknown.
Length = 186
Score = 30.9 bits (70), Expect = 2.9
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 1034 IILVSASFVLVLLLILIIIYRQEMRVWFHSRFG 1066
++LV A VLV +L+ I + RQ MR SR G
Sbjct: 13 VVLVIAYGVLVFVLLFIFVKRQIMRFALKSRRG 45
>gnl|CDD|184900 PRK14907, rplD, 50S ribosomal protein L4; Provisional.
Length = 295
Score = 31.5 bits (71), Expect = 3.0
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 6/79 (7%)
Query: 354 KMNKLDS-SIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLD 412
K+ K+ + + K L +L++ +L++ I S N F S NL N + + S S++
Sbjct: 218 KLEKISTKDLIKKLTKLKINNLKHILIVSNDENIFKSARNL-----QNVIVVKPTSLSVE 272
Query: 413 SLTALSVLSLDNNELEYIE 431
L A VL L +E +E
Sbjct: 273 LLIAADVLVLSKESIENLE 291
>gnl|CDD|179381 PRK02193, truB, tRNA pseudouridine synthase B; Provisional.
Length = 279
Score = 31.3 bits (71), Expect = 3.5
Identities = 37/188 (19%), Positives = 66/188 (35%), Gaps = 29/188 (15%)
Query: 253 QGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVY---LQNNSINVLA 309
+G I+ + + N LN V + +PP + + K Y Q I +
Sbjct: 80 EGQIINVSQNIKVTKENLEEALNNLVGSQKQVPPVFSAKKVNGKRAYDLARQGKQIELKP 139
Query: 310 PGIFNVLTQLIVLDLSNNELTEEWV-------------------NAATFSGLHRLVVLNI 350
I +L+ D WV A S L R + N+
Sbjct: 140 IEIKISKIELLNFDEKLQNCVFMWVVSRGTYIRSLIHDLGKMLKTGAYMSDLERTKIGNL 199
Query: 351 AYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASL---SNLHTLIMSNNKLK--R 405
N +N+ + + DL L+ + L+ ++E + + S S + LI + + +
Sbjct: 200 DKNFLNQSLNPL--DLIDLEQVKLDKEELELLLQGKKISFFANSEEYALIFKDEIVGIGK 257
Query: 406 IESNSLDS 413
I +N L S
Sbjct: 258 IINNVLKS 265
>gnl|CDD|177555 PHA03193, PHA03193, tegument protein VP11/12; Provisional.
Length = 594
Score = 31.2 bits (70), Expect = 4.1
Identities = 17/64 (26%), Positives = 29/64 (45%)
Query: 514 ILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFD 573
I+N+ N + G N AIR + +G LFP + W ++ ++ WF+
Sbjct: 341 IINITFNGYARWLEGGLANPMLRRAIRQQKRFECFLGELFPSINPCAWADLEFSIAAWFE 400
Query: 574 YALI 577
+AL
Sbjct: 401 HALA 404
>gnl|CDD|178758 PLN03219, PLN03219, uncharacterized protein; Provisional.
Length = 108
Score = 29.3 bits (65), Expect = 4.5
Identities = 9/39 (23%), Positives = 26/39 (66%)
Query: 972 IMRTVIPSCNVVSTNVSSHSNNNNNTTTTTTTTTIFIPE 1010
+MR+++P+ + + S + N +++ +++TTT+ +P+
Sbjct: 3 LMRSMLPNAKQIFKSQSMRNKNGSSSPSSSTTTSGLVPK 41
>gnl|CDD|178035 PLN02414, PLN02414, glycine dehydrogenase (decarboxylating).
Length = 993
Score = 31.3 bits (71), Expect = 4.9
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 1076 IEMDDRDKLFDAFVSYSSKDEAFVAEELAPILENGDP 1112
++D DKLF F K F AE LAP +++ P
Sbjct: 451 TTLEDVDKLFKVF--AGGKPVPFTAESLAPEVDSSIP 485
>gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein
YrbF; Provisional.
Length = 269
Score = 30.1 bits (68), Expect = 6.8
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
Query: 796 QLPPRIPMDATELYLDGNRIPVVG-SHSFIGRKKLQILF 833
Q+ P D E+ DG IP + S + RK++ +LF
Sbjct: 56 QIAP----DHGEILFDGENIPAMSRSRLYTVRKRMSMLF 90
>gnl|CDD|236005 PRK07376, PRK07376, NAD(P)H-quinone oxidoreductase subunit F;
Validated.
Length = 673
Score = 30.4 bits (69), Expect = 6.9
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
Query: 1225 RNNNNRNQVRHLN---HSAHHHNHNHRHHQHHHNNTS 1258
R N+ Q L HH H+ H +HHH++ S
Sbjct: 459 RGNDKELQKELLAAADAPGHHEGHHEEHGEHHHHSGS 495
>gnl|CDD|217527 pfam03387, Herpes_UL46, Herpesvirus UL46 protein.
Length = 443
Score = 30.1 bits (68), Expect = 8.5
Identities = 18/72 (25%), Positives = 27/72 (37%), Gaps = 9/72 (12%)
Query: 532 NNSNLV-AIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLD----- 585
NN L A+R G + +G LFP + + W + WF YAL + L
Sbjct: 338 NNPYLRAALRSQGRFCHFLGKLFPTMSSHSWAEMERGTRAWFKYALARS---LLTHGKPT 394
Query: 586 IHGNQISELGNY 597
H ++
Sbjct: 395 KHYEEVLASLAS 406
>gnl|CDD|223116 COG0038, EriC, Chloride channel protein EriC [Inorganic ion transport
and metabolism].
Length = 443
Score = 30.0 bits (68), Expect = 8.5
Identities = 9/45 (20%), Positives = 20/45 (44%)
Query: 1011 HSPMNGSFILSELQPQQDYVFLLIILVSASFVLVLLLILIIIYRQ 1055
+P+ ++ E+ + L+I ++++ LL IY Q
Sbjct: 382 RAPLTAIVLVLEMTGNYQLLLPLLIACLIAYLVSRLLGGRPIYTQ 426
>gnl|CDD|218068 pfam04403, PqiA, Paraquat-inducible protein A. Paraquat is a
superoxide radical-generating agent. The promoter for the
pqiA gene is also inducible by other known superoxide
generators. This is predicted to be a family of integral
membrane proteins, possibly located in the inner
membrane. This family is related to NADH dehydrogenase
subunit 2 (pfam00361).
Length = 162
Score = 29.0 bits (66), Expect = 8.5
Identities = 12/40 (30%), Positives = 18/40 (45%)
Query: 1030 VFLLIILVSASFVLVLLLILIIIYRQEMRVWFHSRFGVRL 1069
VFL ILV +L LL +L+ + R +R+
Sbjct: 57 VFLASILVPLLKLLALLYLLLSLQRGRRPPGRRRMRLLRI 96
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.135 0.398
Gapped
Lambda K H
0.267 0.0925 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 62,915,585
Number of extensions: 6195448
Number of successful extensions: 7207
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6825
Number of HSP's successfully gapped: 198
Length of query: 1269
Length of database: 10,937,602
Length adjustment: 108
Effective length of query: 1161
Effective length of database: 6,147,370
Effective search space: 7137096570
Effective search space used: 7137096570
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (28.5 bits)