RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5670
(1269 letters)
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat,
asymmetric homodimer, glycoprotein, immune system; HET:
NAG FUC; 26.00A {Homo sapiens}
Length = 844
Score = 464 bits (1196), Expect = e-147
Identities = 163/931 (17%), Positives = 325/931 (34%), Gaps = 126/931 (13%)
Query: 349 NIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKR-IE 407
IA+ + L + + + L + L L N I ++ ++F L L L + + I+
Sbjct: 7 RIAFYRFCNL-TQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTID 65
Query: 408 SNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEI---PKVLRNLHSL 464
+ +L L +L L ++++ ++ +A + L + L L++ RNL +L
Sbjct: 66 KEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKAL 125
Query: 465 KTLDLGDNLITEIN-NLSLNSLHQLAGLRLTENNISNISKGVFEKLSV--LTILNLASNK 521
LDL N I + + S L+ L + + N I + + E L L+ +LA+N
Sbjct: 126 TRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANS 185
Query: 522 IQKVEAGTFDNNSN-LVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYALIPAD 580
+ + + N + L+ ++ G + IS++
Sbjct: 186 LYSRVSVDWGKCMNPFRNMVLEILDVSGNG-WTVDITGNFSNAISKSQAFSLIL---AHH 241
Query: 581 LQWLDIHGNQISELG-NYFEIESQLRLTYFDASSNKLTELTGNAIPH--SVENLFLTNNL 637
+ + I + N F ++ + + D S + L ++ L L N
Sbjct: 242 IMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNK 301
Query: 638 ISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHKNIPDFYIGENPFQCDCNM 697
I+K+ F+ NL ++L N L + + + + +N
Sbjct: 302 INKIADEAFYGLDNLQVLNLSYNLLGELYSSNFY-----GLPKVAYIDLQKNH------- 349
Query: 698 QWLQSYSVNKERNKPNLVDLDTVTCKLLYNRANPAILLKEAHSNQFLCEYETNCAPLCHC 757
+ + L LD L N L
Sbjct: 350 --IAIIQDQTFKFLEKLQTLD-----LRDNA-------------------------LTTI 377
Query: 758 CDFDACDCEMTCPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDA---TELYLDGNR 814
+ N ++ AN+I S +N + L L+ NR
Sbjct: 378 HFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNR 437
Query: 815 IPVV-GSHSFIGRKKLQILFLNSSHVE-----TIHNKTFNGLKELIILRLDDNRLTEIRG 868
G + L+ LFL + ++ + F GL L +L L+ N L +
Sbjct: 438 FSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPP 497
Query: 869 YEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSSQIQSITL 928
F L LR L L N++ +S+ + +L++L + N++ + S + + +
Sbjct: 498 GVFSHLTALRGLSLNSNRLTVLSHNDLPA--NLEILDISRNQLLAPNPDVFVS-LSVLDI 554
Query: 929 TSNPWSCDCDFTEKFRDYLQRSRSSVHDISQIRCMTGSEV-GFTIMRTVIPSCNVVSTNV 987
T N + C+C+ + + + + I C+ G ++ C+
Sbjct: 555 THNKFICECELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGCD------ 608
Query: 988 SSHSNNNNNTTTTTTTTTIFIPEHSPMNGSFILSELQPQQDYVFLLIILVSASFVLVLLL 1047
+ + + +V + + L+
Sbjct: 609 -----------------------------------EEEVLKSLKFSLFIVCTVTLTLFLM 633
Query: 1048 ILIIIYRQEMRVWFHSRFGVRLFYKSSEIEMDDRDKLFDAFVSYSSKDEAFVAEELAPIL 1107
++ + + + + RL +K + +DA++ +SSKD +V L L
Sbjct: 634 TILTVTKFRGFCFICYKTAQRLVFKDHPQGTEPDMYKYDAYLCFSSKDFTWVQNALLKHL 693
Query: 1108 EN---GDPAYKLCLHYREFPVGGYIGDTIVQAVESSRRTIMVLSENFIKSEWCRYEFKSA 1164
+ + LC R+F G I A+ +SR+ + ++S +F++ WC F A
Sbjct: 694 DTQYSDQNRFNLCFEERDFVPGENRIANIQDAIWNSRKIVCLVSRHFLRDGWCLEAFSYA 753
Query: 1165 HHQVLRGKK-RLIVILLGEVPQKDL--DPDIRLYLKSNTYLQWGDK-----LFWEKLKFA 1216
+ L LI++++G + Q L IR +++ YL+W + F KL
Sbjct: 754 QGRCLSDLNSALIMVVVGSLSQYQLMKHQSIRGFVQKQQYLRWPEDFQDVGWFLHKLSQQ 813
Query: 1217 LPDVPNNQRNNNNRN-QVRHLNHSAHHHNHN 1246
+ ++ +NN Q +HHH+H+
Sbjct: 814 ILKKEKEKKKDNNIPLQTVATISGSHHHHHH 844
Score = 313 bits (804), Expect = 2e-91
Identities = 136/589 (23%), Positives = 232/589 (39%), Gaps = 60/589 (10%)
Query: 108 FQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHNVFTDELQ 167
Q L + L + F I ++A SF L +L+ L L + L I F + L
Sbjct: 20 PQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQY-----TPLTIDKEAFRN-LP 73
Query: 168 SLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVA--TFSFSNYDTARCGINLRV 225
+L LDL + I+ L F L L L L LS+ F N L
Sbjct: 74 NLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLK------ALTR 127
Query: 226 LDLSNNSFDSLPAEG-FSRLSRLQELYLQGNILTFLADHALDGL--NSLTVLNLSVNNLV 282
LDLS N SL F +L+ L+ + N + + +H L+ L +L+ +L+ N+L
Sbjct: 128 LDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLY 187
Query: 283 NIPPELFNQS------RDLKEVYLQNNSINVLAPGIFN------------VLTQLIVLDL 324
+ + + L+ + + N V G F+ + ++
Sbjct: 188 SRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGF 247
Query: 325 SNNELTEEWVNAATFSGLHR--LVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESI 382
+ + + + TF+GL R + L++++ + L+S +F+ L L+VL+L N+I I
Sbjct: 248 GFHNIKD--PDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKI 305
Query: 383 HRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQ 442
F L NL L +S N L + S++ L ++ + L N + I++ K LQ
Sbjct: 306 ADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQ 365
Query: 443 DFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNIS 502
L N LT I + S+ + L N + + ++L + + L+EN + N+
Sbjct: 366 TLDLRDNALTTIH----FIPSIPDIFLSGNKLVTLPKINLTANL----IHLSENRLENLD 417
Query: 503 KGVF-EKLSVLTILNLASNKIQKVEA-GTFDNNSNLVAIRLDGNYLTDI------GGLFP 554
F ++ L IL L N+ T N +L + L N L +F
Sbjct: 418 ILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFE 477
Query: 555 KLPNLVWLNISENLLEWFDYALIP--ADLQWLDIHGNQISELGNYFEIESQLRLTYFDAS 612
L +L L ++ N L + L+ L ++ N+++ L + L D S
Sbjct: 478 GLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHND---LPANLEILDIS 534
Query: 613 SNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNR 661
N+L + N I + + TF N T V + G
Sbjct: 535 RNQLLAPNPDVFVSLSVLDITHNKFICECELSTFINWLNHTNVTIAGPP 583
Score = 281 bits (720), Expect = 4e-80
Identities = 126/595 (21%), Positives = 220/595 (36%), Gaps = 63/595 (10%)
Query: 164 DELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLS-NVATFSFSNYDTARCGIN 222
L + E L LS N I T+ + F L+ L L L + +F N N
Sbjct: 21 QVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLP------N 74
Query: 223 LRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILT--FLADHALDGLNSLTVLNLSVNN 280
LR+LDL ++ L + F L L EL L L+ L D L +LT L+LS N
Sbjct: 75 LRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ 134
Query: 281 LVNIPPE-LFNQSRDLKEVYLQNNSINVLAPGIFNVLTQ--LIVLDLSNNELTE----EW 333
+ ++ F + LK + +N I ++ L L L+ N L +W
Sbjct: 135 IRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDW 194
Query: 334 VNAATFSGLHRLVVLNIAYNKMNKLDSSIF------------KDLYRLQVLHLENNQIES 381
L +L+++ N + F + + + I+
Sbjct: 195 GKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKD 254
Query: 382 IHRNTFASL--SNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNST 439
+NTFA L S++ L +S+ + + S ++L L VL+L N++ I + A
Sbjct: 255 PDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLD 314
Query: 440 SLQDFHLNGNKLTEIPK-VLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNI 498
+LQ +L+ N L E+ L + +DL N I I + + L +L L L +N +
Sbjct: 315 NLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL 374
Query: 499 SNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGL--FPKL 556
+ I + + + L+ NK+ + N I L N L ++ L ++
Sbjct: 375 TTIH-----FIPSIPDIFLSGNKLVTLPKINLTANL----IHLSENRLENLDILYFLLRV 425
Query: 557 PNLVWLNISENLLEWFDYALIPAD---LQWLDIHGNQISELGNYFEIESQL----RLTYF 609
P+L L +++N P++ L+ L + N + L
Sbjct: 426 PHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVL 485
Query: 610 DASSNKLTELTGNAIPH--SVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQ 667
+ N L L H ++ L L +N ++ + NL +D+ N+L N
Sbjct: 486 YLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNP 543
Query: 668 TALRISPLPSHKNIPDFYIGENPFQCDCNMQWLQSYSVNKERNKPNLVDLDTVTC 722
++ I N F C+C + ++ + + C
Sbjct: 544 DVF--------VSLSVLDITHNKFICECELSTFINWLNHTNVTIAG--PPADIYC 588
Score = 221 bits (566), Expect = 4e-60
Identities = 103/433 (23%), Positives = 173/433 (39%), Gaps = 38/433 (8%)
Query: 105 PGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLR-THNTDWSTMSLDISHNVFT 163
SF L LK + +I + L+ N+ +S +S+D +
Sbjct: 141 HPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNP 200
Query: 164 DELQSLESLDLSMNSIWTLPDAIFC------------PLQSLSYLNLTQNKLSNVATFSF 211
LE LD+S N F + + + + +F
Sbjct: 201 FRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTF 260
Query: 212 SNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSL 271
+ ++R LDLS+ SL + F L L+ L L N + +AD A GL++L
Sbjct: 261 AGL----ARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNL 316
Query: 272 TVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTE 331
VLNLS N L + F + + LQ N I ++ F L +L LDL +N LT
Sbjct: 317 QVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT- 375
Query: 332 EWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTF-ASL 390
T + + + ++ NK+ L ++HL N++E++ F +
Sbjct: 376 ------TIHFIPSIPDIFLSGNKLVTLPKINL----TANLIHLSENRLENLDILYFLLRV 425
Query: 391 SNLHTLIMSNNKLKRIESNSLDS-LTALSVLSLDNNELEY-----IEENALKNSTSLQDF 444
+L LI++ N+ + S +L L L N L+ + + + + LQ
Sbjct: 426 PHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVL 485
Query: 445 HLNGNKLTEIPK-VLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISK 503
+LN N L +P V +L +L+ L L N +T +++ L L L ++ N + +
Sbjct: 486 YLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDL--PANLEILDISRNQLLAPNP 543
Query: 504 GVFEKLSVLTILN 516
VF LSVL I +
Sbjct: 544 DVFVSLSVLDITH 556
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG;
2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Length = 680
Score = 379 bits (976), Expect = e-117
Identities = 142/687 (20%), Positives = 258/687 (37%), Gaps = 83/687 (12%)
Query: 101 SSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHN 160
L +F L L V F I L + L LK
Sbjct: 38 RRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKV-------------------- 77
Query: 161 VFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCG 220
L+L N + L D F +L+ L+L N + + F
Sbjct: 78 -----------LNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVK------Q 120
Query: 221 INLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLN--SLTVLNLSV 278
NL LDLS+N S +L LQEL L N + L LD SL L LS
Sbjct: 121 KNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSS 180
Query: 279 NNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNV---LTQLIVLDLSNNELTEEWVN 335
N + P F+ L ++L N + + T + L LSN++L+ +
Sbjct: 181 NQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLST--TS 238
Query: 336 AATFSGLH--RLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNL 393
TF GL L +L+++YN +N + + F L +L+ LE N I+ + ++ L N+
Sbjct: 239 NTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNV 298
Query: 394 HTLIMSNN---------KLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDF 444
L + + L +I+ S L L L++++N++ I+ N +L+
Sbjct: 299 RYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYL 358
Query: 445 HLNGNKL---TEIPKVLRNL--HSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNIS 499
L+ + T + +L L L+L N I++I + + + L L L L N I
Sbjct: 359 SLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIG 418
Query: 500 -NISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIG---GLFPK 555
++ + L + + L+ NK ++ +F +L + L L ++ F
Sbjct: 419 QELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQP 478
Query: 556 LPNLVWLNISENLLEWFDYALIPA--DLQWLDIHGNQISEL-------GNYFEIESQLRL 606
L NL L++S N + + ++ L+ LD+ N ++ L G + ++ L
Sbjct: 479 LRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHL 538
Query: 607 TYFDASSNKLTELTGNAIP--HSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKN 664
+ SN E+ ++ + L N ++ + F + +L ++L N + +
Sbjct: 539 HILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITS 598
Query: 665 INQTALRISPLPSHKNIPDFYIGENPFQCDC-NMQWLQSYSVNKERNKPNLVDLDTVTCK 723
+ + P+ +N+ + + NPF C C ++ W ++ E + C
Sbjct: 599 VEKKVFG----PAFRNLTELDMRFNPFDCTCESIAWFVNW--INETHTNIPELSSHYLCN 652
Query: 724 LLYNRANPAIL-LKEAHSNQFLCEYET 749
+ + + +
Sbjct: 653 TPPHYHGFPVRLFDTSSCKDSAHHHHH 679
Score = 279 bits (717), Expect = 4e-81
Identities = 129/507 (25%), Positives = 206/507 (40%), Gaps = 39/507 (7%)
Query: 192 SLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELY 251
S + + KL+ V +N + VL+L++N LPA F+R S+L L
Sbjct: 5 SHEVADCSHLKLTQVPDDLPTN---------ITVLNLTHNQLRRLPAANFTRYSQLTSLD 55
Query: 252 LQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPG 311
+ N ++ L L L VLNL N L + + F +L E++L +NSI +
Sbjct: 56 VGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNN 115
Query: 312 IFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDL--YRL 369
F LI LDLS+N L+ T L L L ++ NK+ L S L
Sbjct: 116 PFVKQKNLITLDLSHNGLSS--TKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSL 173
Query: 370 QVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSL---DSLTALSVLSLDNNE 426
+ L L +NQI+ F ++ L L ++N +L + L + T++ LSL N++
Sbjct: 174 KKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQ 233
Query: 427 LEYIEENALKN--STSLQDFHLNGNKLTEI-PKVLRNLHSLKTLDLGDNLITEINNLSLN 483
L T+L L+ N L + L L+ L N I + + SL+
Sbjct: 234 LSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLH 293
Query: 484 SLHQLAGLRLTEN---------NISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNS 534
L + L L + ++ I F+ L L LN+ N I +++ F
Sbjct: 294 GLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLI 353
Query: 535 NLVAIRLDGNYL---TDIGGLFPKLPN--LVWLNISENLLEWFDYALIP--ADLQWLDIH 587
NL + L ++ T F L + L LN+++N + + L+ LD+
Sbjct: 354 NLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLG 413
Query: 588 GNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPH--SVENLFLTNNLISKVQPYT 645
N+I + E + S NK +LT N+ S++ L L + V
Sbjct: 414 LNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSP 473
Query: 646 FFMK--PNLTRVDLVGNRLKNINQTAL 670
+ NLT +DL N + NIN L
Sbjct: 474 SPFQPLRNLTILDLSNNNIANINDDML 500
Score = 269 bits (690), Expect = 2e-77
Identities = 112/487 (22%), Positives = 208/487 (42%), Gaps = 33/487 (6%)
Query: 218 RCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLS 277
+C ++ V D S+ +P + + + L L N L L + LT L++
Sbjct: 1 KCTVSHEVADCSHLKLTQVPDDLP---TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVG 57
Query: 278 VNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAA 337
N + + PEL + LK + LQ+N ++ L+ F T L L L +N + + +
Sbjct: 58 FNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQK--IKNN 115
Query: 338 TFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSN--LHT 395
F L+ L++++N ++ L LQ L L NN+I+++ +N L
Sbjct: 116 PFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKK 175
Query: 396 LIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALK---NSTSLQDFHLNGNKLT 452
L +S+N++K ++ L L L+N +L L +TS+++ L+ ++L+
Sbjct: 176 LELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLS 235
Query: 453 EI-PKVLRNLH--SLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKL 509
L +L LDL N + + N S L QL L NNI ++ L
Sbjct: 236 TTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGL 295
Query: 510 SVLTILNLASN---------KIQKVEAGTFDNNSNLVAIRLDGNYLTDI-GGLFPKLPNL 559
+ LNL + + K++ +F L + ++ N + I +F L NL
Sbjct: 296 FNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINL 355
Query: 560 VWLNISENLLEWFD------YALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASS 613
+L++S + +L + L L++ N+IS++ + L D
Sbjct: 356 KYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESD-AFSWLGHLEVLDLGL 414
Query: 614 NKLT-ELTGNAIP--HSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTAL 670
N++ ELTG ++ ++L+ N ++ +F + P+L R+ L LKN++ +
Sbjct: 415 NEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPS 474
Query: 671 RISPLPS 677
PL +
Sbjct: 475 PFQPLRN 481
Score = 130 bits (329), Expect = 4e-31
Identities = 54/210 (25%), Positives = 98/210 (46%), Gaps = 8/210 (3%)
Query: 99 FQSSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDIS 158
L+ ++ L ++ ++ + + K L+ SF + L+ L LR + ++D S
Sbjct: 417 IGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLR-RV---ALKNVDSS 472
Query: 159 HNVFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTAR 218
+ F L++L LDLS N+I + D + L+ L L+L N L+ + +
Sbjct: 473 PSPFQP-LRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYF 531
Query: 219 CGI--NLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNL 276
+L +L+L +N FD +P E F L L+ + L N L L + SL LNL
Sbjct: 532 LKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNL 591
Query: 277 SVNNLVNIPPELFNQS-RDLKEVYLQNNSI 305
N + ++ ++F + R+L E+ ++ N
Sbjct: 592 QKNLITSVEKKVFGPAFRNLTELDMRFNPF 621
Score = 99.3 bits (248), Expect = 2e-21
Identities = 44/165 (26%), Positives = 73/165 (44%), Gaps = 17/165 (10%)
Query: 773 CTCYHDVSWEANVIDCSTGGYDNQL---PPRIPMDATELYLDGNRIPVVGSHSFIGRKKL 829
CT H+V DCS +L P +P + T L L N++ + + +F +L
Sbjct: 2 CTVSHEV------ADCS----HLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQL 51
Query: 830 QILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIY 889
L + + + + + L L +L L N L+++ F NL EL+L N I
Sbjct: 52 TSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQK 111
Query: 890 ISNRTFLSLTHLKVLQLDHNRITSF---AVWHLSSQIQSITLTSN 931
I N F+ +L L L HN ++S L + +Q + L++N
Sbjct: 112 IKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLEN-LQELLLSNN 155
Score = 93.1 bits (232), Expect = 2e-19
Identities = 42/171 (24%), Positives = 70/171 (40%), Gaps = 12/171 (7%)
Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKT--------FNGLKELIILR 857
T L L N I + G +KL+IL L +++ + GL L IL
Sbjct: 483 TILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILN 542
Query: 858 LDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSF--- 914
L+ N EI F+ L L+ + L N + + F + LK L L N ITS
Sbjct: 543 LESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKK 602
Query: 915 AVWHLSSQIQSITLTSNPWSCDCDFTEKFRDYLQRSRSSVHDI-SQIRCMT 964
+ + + NP+ C C+ F +++ + +++ ++ S C T
Sbjct: 603 VFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNT 653
Score = 85.1 bits (211), Expect = 8e-17
Identities = 37/135 (27%), Positives = 58/135 (42%), Gaps = 4/135 (2%)
Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
L L N + + +F L L L S+ ++ I N F K LI L L N L+
Sbjct: 76 KVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS 135
Query: 866 IRGYEFERLENLRELYLQYNKIIYISNRTF--LSLTHLKVLQLDHNRITSF--AVWHLSS 921
+ +LENL+EL L NKI + + + + LK L+L N+I F +H
Sbjct: 136 TKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIG 195
Query: 922 QIQSITLTSNPWSCD 936
++ + L +
Sbjct: 196 RLFGLFLNNVQLGPS 210
Score = 81.2 bits (201), Expect = 1e-15
Identities = 32/133 (24%), Positives = 66/133 (49%), Gaps = 7/133 (5%)
Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
TEL+L N I + ++ F+ +K L L L+ + + + T L+ L L L +N++
Sbjct: 100 TELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQA 159
Query: 866 IRGYEFERLEN--LRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLS--- 920
++ E + N L++L L N+I S F ++ L L L++ ++ L
Sbjct: 160 LKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLEL 219
Query: 921 --SQIQSITLTSN 931
+ I++++L+++
Sbjct: 220 ANTSIRNLSLSNS 232
Score = 78.1 bits (193), Expect = 1e-14
Identities = 26/112 (23%), Positives = 44/112 (39%), Gaps = 3/112 (2%)
Query: 806 TELYLDGNRI-PVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLT 864
L L N I + + G + + ++L+ + + +F + L L L L
Sbjct: 408 EVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALK 467
Query: 865 EIRGY--EFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSF 914
+ F+ L NL L L N I I++ L L++L L HN +
Sbjct: 468 NVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARL 519
Score = 77.3 bits (191), Expect = 2e-14
Identities = 30/114 (26%), Positives = 54/114 (47%), Gaps = 5/114 (4%)
Query: 806 TELYLDGNR--IPVVGSHSFIG--RKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDN 861
L L + + + + +F+ L IL L + + I + F+ L L +L L N
Sbjct: 356 KYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLN 415
Query: 862 RLT-EIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSF 914
+ E+ G E+ LEN+ E+YL YNK + ++ +F + L+ L L + +
Sbjct: 416 EIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNV 469
Score = 74.7 bits (184), Expect = 1e-13
Identities = 31/116 (26%), Positives = 56/116 (48%), Gaps = 9/116 (7%)
Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDN---- 861
T L L N + VVG+ SF +L+ FL ++++ + + + +GL + L L +
Sbjct: 251 TMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQ 310
Query: 862 -----RLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRIT 912
L +I + F+ L+ L L ++ N I I + F L +LK L L ++ +
Sbjct: 311 SISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTS 366
Score = 73.5 bits (181), Expect = 3e-13
Identities = 27/112 (24%), Positives = 50/112 (44%), Gaps = 5/112 (4%)
Query: 806 TELYLDGNRIPVVGSHSF---IGRKKLQILFLNSSHVETIHNKTFNGLK--ELIILRLDD 860
L+L+ ++ + + ++ L L++S + T N TF GLK L +L L
Sbjct: 198 FGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSY 257
Query: 861 NRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRIT 912
N L + F L L +L+YN I ++ + + L +++ L L +
Sbjct: 258 NNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTK 309
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2
related L recognition, receptor, innate immunity,
glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus
musculus} PDB: 3b2d_A* 3rg1_A*
Length = 606
Score = 367 bits (944), Expect = e-113
Identities = 124/591 (20%), Positives = 213/591 (36%), Gaps = 56/591 (9%)
Query: 151 STMSLDISHNVFTD-------ELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKL 203
ST L+ S NV L +L LDL+ I+ + + F L L LT N L
Sbjct: 34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPL 93
Query: 204 SNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADH 263
+A + S L+ L S+ L+ LYL N ++ +
Sbjct: 94 IFMAETALSGP------KALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLP 147
Query: 264 ALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYL--QNNSINVLAPGIFNVLTQLIV 321
L VL+ N + + E + + + L N I + PG F+
Sbjct: 148 KGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFD-SAVFQS 206
Query: 322 LDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYR--LQVLHLENNQI 379
L+ + S + L + + ++F+ L ++ ++L+ +
Sbjct: 207 LNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYF 266
Query: 380 ESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNST 439
+I NTF S L L ++ L + + L L+ L L L N+ E + + + N
Sbjct: 267 FNISSNTFHCFSGLQELDLTATHLSELP-SGLVGLSTLKKLVLSANKFENLCQISASNFP 325
Query: 440 SLQDFHLNGNKL--TEIPKVLRNLHSLKTLDLGDNLIT--EINNLSLNSLHQLAGLRLTE 495
SL + GN L NL +L+ LDL + I + NL L +L L L L+
Sbjct: 326 SLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSY 385
Query: 496 NNISNISKGVFEKLSVLTILNLASNKIQKVEA-GTFDNNSNLVAIRLDGNYLTDIG-GLF 553
N ++ F++ L +L+LA +++ +A F N L + L + L LF
Sbjct: 386 NEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLF 445
Query: 554 PKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASS 613
LP L LN+ N + LQ L RL S
Sbjct: 446 DGLPALQHLNLQGNHFPKGNI-QKTNSLQTLG-------------------RLEILVLSF 485
Query: 614 NKLTELTGNAIPH--SVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALR 671
L+ + +A + ++ L++N ++ + ++L N + I + L
Sbjct: 486 CDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLP 544
Query: 672 ISPLPSHKNIPDFYIGENPFQCDCNMQWLQSYSVNKERNKPNLVDLDTVTC 722
I + +NP C C+ + + + N L D + C
Sbjct: 545 ILS-----QQRTINLRQNPLDCTCSNIYFLEWY---KENMQKLEDTEDTLC 587
Score = 276 bits (707), Expect = 2e-80
Identities = 99/518 (19%), Positives = 194/518 (37%), Gaps = 71/518 (13%)
Query: 101 SSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHN 160
SS+ L+ L + I ++ KLK
Sbjct: 118 SSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKV-------------------- 157
Query: 161 VFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLS--YLNLTQNKLSNVATFSFSNYDTAR 218
LD N+I L LQ + LNL N ++ + +F +
Sbjct: 158 -----------LDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDS----- 201
Query: 219 CGINLRVLDLSNNSF--DSLPAEGFSRLSRLQELYLQGNILTFLADHALDGL--NSLTVL 274
+ L+ S + L + ++ +GL S+ +
Sbjct: 202 --AVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESI 259
Query: 275 NLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWV 334
NL + NI F+ L+E+ L ++ L G+ L+ L L LS N+ +
Sbjct: 260 NLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVG-LSTLKKLVLSANKFEN--L 316
Query: 335 NAATFSGLHRLVVLNIAYN-KMNKLDSSIFKDLYRLQVLHLENNQIESIH--RNTFASLS 391
+ S L L+I N K +L + ++L L+ L L ++ IE+ +LS
Sbjct: 317 CQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLS 376
Query: 392 NLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIE-ENALKNSTSLQDFHLNGNK 450
+L +L +S N+ +++ + L +L L L+ + ++ +N L+ +L+ +
Sbjct: 377 HLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSL 436
Query: 451 LTEIPK-VLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLR---LTENNISNISKGVF 506
L + + L +L+ L+L N + N NSL L L L+ ++S+I + F
Sbjct: 437 LDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAF 496
Query: 507 EKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDI-GGLFPKLPNLVWLNIS 565
L ++ ++L+ N++ + + + L N+++ I L P L +N+
Sbjct: 497 TSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLPILSQQRTINLR 555
Query: 566 ENLLE------WFDYALIPADLQWLDIHGNQISELGNY 597
+N L+ +F L+W + ++ + +
Sbjct: 556 QNPLDCTCSNIYF--------LEWYKENMQKLEDTEDT 585
Score = 235 bits (601), Expect = 3e-66
Identities = 94/449 (20%), Positives = 167/449 (37%), Gaps = 60/449 (13%)
Query: 101 SSLSPGSFQTLIDLK--DLSVEFCKIGNLSAGSFRGLRKLKTLTLR------------TH 146
LS +L L++ I + G+F ++L +
Sbjct: 166 HYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAV-FQSLNFGGTQNLLVIFKGLKN 224
Query: 147 NTDWSTMSLDISHNVFTD---------ELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLN 197
+T S D S+ES++L + + + F L L+
Sbjct: 225 STIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELD 284
Query: 198 LTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGN-I 256
LT LS + + L+ L LS N F++L S L L ++GN
Sbjct: 285 LTATHLSELPSGLVGLS-------TLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTK 337
Query: 257 LTFLADHALDGLNSLTVLNLSVNNLVNIP--PELFNQSRDLKEVYLQNNSINVLAPGIFN 314
L L+ L +L L+LS +++ L+ + L N L F
Sbjct: 338 RLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFK 397
Query: 315 VLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHL 374
QL +LDL+ L + + F LH L VLN++++ ++ +F L LQ L+L
Sbjct: 398 ECPQLELLDLAFTRLKVKDAQSP-FQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNL 456
Query: 375 ENNQIESIHR---NTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIE 431
+ N + N+ +L L L++S L I+ ++ SL ++ + L +N L
Sbjct: 457 QGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSS 516
Query: 432 ENALKNSTSLQDFHLNGNKLTEI-PKVLRNLHSLKTLDLGDN------------------ 472
AL + + +L N ++ I P +L L +T++L N
Sbjct: 517 IEALSHLKGIY-LNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIYFLEWYKEN 575
Query: 473 --LITEINNLSLNSLHQLAGLRLTENNIS 499
+ + + + L G+RL++ +S
Sbjct: 576 MQKLEDTEDTLCENPPLLRGVRLSDVTLS 604
Score = 146 bits (370), Expect = 1e-36
Identities = 51/282 (18%), Positives = 88/282 (31%), Gaps = 13/282 (4%)
Query: 395 TLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEI 454
T N L I +S L N L I+ +L L ++ I
Sbjct: 16 TYNCENLGLNEIPGTLPNSTE---CLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWI 72
Query: 455 -PKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLT 513
++ H L TL L N + + +L+ L L + IS+I L
Sbjct: 73 HEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLE 132
Query: 514 ILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDI-GGLFPKLPNL--VWLNISENLLE 570
L L SN I ++ L + N + + L + LN++ N +
Sbjct: 133 SLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA 192
Query: 571 WFDYALIPAD-LQWLDIHGNQIS-ELGNYFEIESQLRLTYFDASSNKLTELTGNAIPH-- 626
+ + Q L+ G Q + + + L +++
Sbjct: 193 GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLC 252
Query: 627 --SVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNIN 666
SVE++ L + + TF L +DL L +
Sbjct: 253 EMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELP 294
Score = 124 bits (314), Expect = 2e-29
Identities = 46/207 (22%), Positives = 87/207 (42%), Gaps = 10/207 (4%)
Query: 100 QSSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISH 159
S + L L+ L++ + + +L +F+ +L+ L L + + +
Sbjct: 364 TSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLA-FT----RLKVKDAQ 418
Query: 160 NVFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARC 219
+ F + L L+ L+LS + + + +F L +L +LNL N ++ T
Sbjct: 419 SPFQN-LHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLG- 476
Query: 220 GINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVN 279
L +L LS S+ F+ L + + L N LT + AL L + LNL+ N
Sbjct: 477 --RLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASN 533
Query: 280 NLVNIPPELFNQSRDLKEVYLQNNSIN 306
++ I P L + + L+ N ++
Sbjct: 534 HISIILPSLLPILSQQRTINLRQNPLD 560
Score = 112 bits (283), Expect = 1e-25
Identities = 34/166 (20%), Positives = 58/166 (34%), Gaps = 5/166 (3%)
Query: 768 TCPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRK 827
T ++ C +C G N++P +P L N +P + + +F
Sbjct: 1 TTSSDQKCIEKE--VNKTYNCENLGL-NEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLI 57
Query: 828 KLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKI 887
L L L + IH TF L L L N L + + L+ L+ I
Sbjct: 58 NLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGI 117
Query: 888 IYISNRTFLSLTHLKVLQLDHNRITSFAVWHLS--SQIQSITLTSN 931
I + L+ L L N I+S + +++ + +N
Sbjct: 118 SSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNN 163
Score = 102 bits (255), Expect = 3e-22
Identities = 39/181 (21%), Positives = 66/181 (36%), Gaps = 7/181 (3%)
Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNS---SHVETIHNKTFNGLKELIILRLDDNR 862
L L + + + F G LQ L L + L L IL L
Sbjct: 428 KVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD 487
Query: 863 LTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSF--AVWHLS 920
L+ I + F L+ + + L +N++ S L + L L N I+ ++ +
Sbjct: 488 LSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPIL 546
Query: 921 SQIQSITLTSNPWSCDCDFTEKFRDYLQRSRSSVHDISQIRCMTGSEVGFTIMRTVIPSC 980
SQ ++I L NP C C F ++ + + + D C + + V SC
Sbjct: 547 SQQRTINLRQNPLDCTCS-NIYFLEWYKENMQKLEDTEDTLCENPPLLRGVRLSDVTLSC 605
Query: 981 N 981
+
Sbjct: 606 S 606
Score = 90.8 bits (226), Expect = 9e-19
Identities = 41/208 (19%), Positives = 83/208 (39%), Gaps = 15/208 (7%)
Query: 99 FQSSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDIS 158
+ + FQ L LK L++ + S F GL L+ L L+ N +I
Sbjct: 412 LKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQ-GN---HFPKGNIQ 467
Query: 159 HNVFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTAR 218
L LE L LS + ++ F L+ +++++L+ N+L++ + + S+
Sbjct: 468 KTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSH----- 522
Query: 219 CGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSV 278
+ L+L++N + LS+ + + L+ N L + L ++
Sbjct: 523 --LKGIYLNLASNHISIILPSLLPILSQQRTINLRQNPLDC--TCSNIYF--LEWYKENM 576
Query: 279 NNLVNIPPELFNQSRDLKEVYLQNNSIN 306
L + L L+ V L + +++
Sbjct: 577 QKLEDTEDTLCENPPLLRGVRLSDVTLS 604
Score = 82.4 bits (204), Expect = 4e-16
Identities = 32/129 (24%), Positives = 49/129 (37%), Gaps = 3/129 (2%)
Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
L L N + + + G K L+ LF + + +I + K L L L N ++
Sbjct: 84 DTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISS 143
Query: 866 IRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLD--HNRITSF-AVWHLSSQ 922
I+ + E L+ L Q N I Y+S SL L L+ N I S+
Sbjct: 144 IKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAV 203
Query: 923 IQSITLTSN 931
QS+
Sbjct: 204 FQSLNFGGT 212
Score = 80.8 bits (200), Expect = 1e-15
Identities = 22/132 (16%), Positives = 49/132 (37%), Gaps = 6/132 (4%)
Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNS-SHVETIHNKTFNGLKELIILRLDDNRLT 864
+L L N+ + S L L + + + L+ L L L + +
Sbjct: 304 KKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIE 363
Query: 865 --EIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRIT---SFAVWHL 919
+ + L +L+ L L YN+ + + F L++L L R+ + + +
Sbjct: 364 TSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQN 423
Query: 920 SSQIQSITLTSN 931
++ + L+ +
Sbjct: 424 LHLLKVLNLSHS 435
Score = 70.8 bits (174), Expect = 2e-12
Identities = 22/132 (16%), Positives = 49/132 (37%), Gaps = 8/132 (6%)
Query: 806 TELYLDGNRIPVVGSHSFIGRKK--LQILFLNSSHVETIHNKTFNGLKELIILRLDDNRL 863
+ + F G + ++ + L + I + TF+ L L L L
Sbjct: 231 WLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHL 290
Query: 864 TEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNR----ITSFAVWHL 919
+E+ L L++L L NK + + + L L + N + + + +L
Sbjct: 291 SELP-SGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENL 349
Query: 920 SSQIQSITLTSN 931
+ ++ + L+ +
Sbjct: 350 EN-LRELDLSHD 360
Score = 58.5 bits (142), Expect = 1e-08
Identities = 22/133 (16%), Positives = 45/133 (33%), Gaps = 7/133 (5%)
Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSH--VETIHNKTFNGLK-ELIILRLDDNR 862
L N I + ++ L LN + + I F+ + + N
Sbjct: 156 KVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNL 215
Query: 863 LTEIRGYEFERLENLRELYLQYNKIIYISNRTF--LSLTHLKVLQLDHNRITSF--AVWH 918
L +G + +++L + IS F L ++ + L + + +H
Sbjct: 216 LVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFH 275
Query: 919 LSSQIQSITLTSN 931
S +Q + LT+
Sbjct: 276 CFSGLQELDLTAT 288
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid
recognition, receptor immunity, lipid binding,
glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO
MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Length = 606
Score = 313 bits (805), Expect = 7e-94
Identities = 120/538 (22%), Positives = 197/538 (36%), Gaps = 45/538 (8%)
Query: 101 SSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHN 160
L SF +L+ L + C+I + ++ GL L L L T N S S
Sbjct: 45 KILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLIL-TGNPIQS-----FSPG 98
Query: 161 VFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNV---ATFSFSNYDTA 217
F+ L SLE+L + +L L +L LN+ N + + A FS
Sbjct: 99 SFSG-LTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLT---- 153
Query: 218 RCGINLRVLDLSNNSFDSLPAEGFSRLSRL----QELYLQGNILTFLADHALDGLNSLTV 273
NL +DLS N ++ L L + N + F+ D A G+ L
Sbjct: 154 ----NLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIK-LHE 208
Query: 274 LNLSVNNL-VNIPPELFNQSRDLKEVYL------QNNSINVLAPGIFNVLTQLIVLDLSN 326
L L N NI L L ++ + P I L + + +
Sbjct: 209 LTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRL 268
Query: 327 NELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNT 386
+ + F L + +++A + L+ ++ Q L + Q++
Sbjct: 269 TYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPK--HFKWQSLSIIRCQLKQF---P 323
Query: 387 FASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKN--STSLQDF 444
L L +L ++ NK +L +LS L L N L + + + + SL+
Sbjct: 324 TLDLPFLKSLTLTMNKGSISFKKV--ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHL 381
Query: 445 HLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLS-LNSLHQLAGLRLTENNISNISK 503
L+ N + L L+ LD + + + S SL +L L ++ N
Sbjct: 382 DLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFD 441
Query: 504 GVFEKLSVLTILNLASNKIQKV-EAGTFDNNSNLVAIRLDGNYLTDI-GGLFPKLPNLVW 561
G+F L+ L L +A N + + F N +NL + L L I G+F L L
Sbjct: 442 GIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQL 501
Query: 562 LNISENLLEWFDYALIP--ADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLT 617
LN+S N L + D + L LD N+I L +F+ ++N +
Sbjct: 502 LNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGIL-QHFPKSLAFFNLTNNSVA 558
Score = 286 bits (735), Expect = 3e-84
Identities = 108/565 (19%), Positives = 196/565 (34%), Gaps = 76/565 (13%)
Query: 222 NLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNL 281
+ + +DLS N L + FS S LQ L L + + D A GL+ L+ L L+ N +
Sbjct: 33 STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPI 92
Query: 282 VNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSG 341
+ P F+ L+ + + L L L L++++N + + A FS
Sbjct: 93 QSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLP-AYFSN 151
Query: 342 LHRLVVLNIAYNKMNKLDSSIFKDL----YRLQVLHLENNQIESIHRNTFASLSNLHTLI 397
L LV ++++YN + + + + L L + N I+ I F + LH L
Sbjct: 152 LTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELT 210
Query: 398 MSNNKLKR-IESNSLDSLTALSVLSL------DNNELEYIEENALKNSTSLQ--DFHLNG 448
+ N I L +L L V L D LE E + ++ + +F L
Sbjct: 211 LRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTY 270
Query: 449 NKLTEI-PKVLRNLHSLKTLDLGDNLITE-------------------INNLSLNSLHQL 488
L ++ + L I + L L
Sbjct: 271 TNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFL 330
Query: 489 AGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDN--NSNLVAIRLDGNYL 546
L LT N S K L L+ L+L+ N + ++ + ++L + L N
Sbjct: 331 KSLTLTMNKGSISFK--KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGA 388
Query: 547 TDIGGLFPKLPNLVWLNISENLLEWFDYALIPADLQWL---------------------- 584
+ F L L L+ + L+ L+ L
Sbjct: 389 IIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLT 448
Query: 585 -----DIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIP--HSVENLFLTNNL 637
+ GN + + LT+ D S +L +++ H ++ L +++N
Sbjct: 449 SLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNN 508
Query: 638 ISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHKNIPDFYIGENPFQCDCNM 697
+ + + +L+ +D NR++ ++ F + N C C
Sbjct: 509 LLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPK-----SLAFFNLTNNSVACICEH 563
Query: 698 QWLQSYSVNKERNKPNLVDLDTVTC 722
Q + + K LV+++ +TC
Sbjct: 564 QKFLQWV---KEQKQFLVNVEQMTC 585
Score = 211 bits (538), Expect = 4e-58
Identities = 87/413 (21%), Positives = 147/413 (35%), Gaps = 36/413 (8%)
Query: 98 FFQSSLSPGSFQTLIDLKDLS------VEFCKIGNLSAGSFRGLRKLKTLTLR-THNTDW 150
F S++ Q L L + + GL + R T+
Sbjct: 215 FNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTN-- 272
Query: 151 STMSLDISHNVFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFS 210
F L ++ ++ L+ SI L D L++ + +L T
Sbjct: 273 ---DFSDDIVKFHC-LANVSAMSLAGVSIKYLEDVPKHF--KWQSLSIIRCQLKQFPTLD 326
Query: 211 FSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALD--GL 268
L+ L L+ N L L L L N L+F + G
Sbjct: 327 LPF---------LKSLTLTMNKGSISFK--KVALPSLSYLDLSRNALSFSGCCSYSDLGT 375
Query: 269 NSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAP-GIFNVLTQLIVLDLSNN 327
NSL L+LS N I F +L+ + Q++++ + F L +L+ LD+S
Sbjct: 376 NSLRHLDLS-FNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYT 434
Query: 328 ELTEEWVNAATFSGLHRLVVLNIAYNKM-NKLDSSIFKDLYRLQVLHLENNQIESIHRNT 386
F GL L L +A N + S++F + L L L Q+E I
Sbjct: 435 NTKI--DFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGV 492
Query: 387 FASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHL 446
F +L L L MS+N L ++S+ + L +LS L N +E + SL F+L
Sbjct: 493 FDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNL 552
Query: 447 NGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNIS 499
N + I + L+ + + + ++ + ++ + + N S
Sbjct: 553 TNNSVACIC---EHQKFLQWVKEQKQFLVNVEQMTCATPVEMNTSLVLDFNNS 602
Score = 162 bits (412), Expect = 8e-42
Identities = 91/509 (17%), Positives = 162/509 (31%), Gaps = 62/509 (12%)
Query: 444 FHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISK 503
+ KL+++P + S K +DL N + + + S ++ +L L L+ I I
Sbjct: 16 YQCMDQKLSKVPDDI--PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIED 73
Query: 504 GVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDI-GGLFPKLPNLVWL 562
+ L L+ L L N IQ G+F ++L + L + +L L L
Sbjct: 74 KAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKL 133
Query: 563 NISENLLEWFDYALIPAD---LQWLDIHGNQISEL-GNYFEIESQLR--LTYFDASSNKL 616
N++ N + ++ L +D+ N I + N + + D S N +
Sbjct: 134 NVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPI 193
Query: 617 TELTGNAIPH-SVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPL 675
+ A + L L N S T L ++ L +
Sbjct: 194 DFIQDQAFQGIKLHELTLRGNFNSSNIMKTCL------------QNLAGLHVHRLILGEF 241
Query: 676 PSHKNIPDFYIGENPFQCDCNMQWL-------QSYSVNKERNKPNLVDLDTVTCKLLYNR 728
+N+ F CD + S + K N+ + L
Sbjct: 242 KDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMS-----LAGVS 296
Query: 729 ANPAILLKEAHSNQFLCEYETNCAPLCHCCDFDACDCEMTCPNNCTCYHDVSWEANVIDC 788
+K C + + ++ N
Sbjct: 297 ------IKYLEDVPKH--------FKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSI 342
Query: 789 STGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSF--IGRKKLQILFLNSSHVETIHNKT 846
S + P + + L L N + G S+ +G L+ L L+ + I +
Sbjct: 343 S---FKKVALPSL----SYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGA-IIMSAN 394
Query: 847 FNGLKELIILRLDDNRLTEI-RGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQ 905
F GL+EL L + L + F LE L L + Y + FL LT L L+
Sbjct: 395 FMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLK 454
Query: 906 LDHNRITSF---AVWHLSSQIQSITLTSN 931
+ N V+ ++ + + L+
Sbjct: 455 MAGNSFKDNTLSNVFANTTNLTFLDLSKC 483
Score = 102 bits (256), Expect = 2e-22
Identities = 40/149 (26%), Positives = 58/149 (38%), Gaps = 11/149 (7%)
Query: 769 CPNNCTCYHDVSWEANVIDCSTGGYDNQL---PPRIPMDATELYLDGNRIPVVGSHSFIG 825
N C C D +L P IP + L N + ++ S+SF
Sbjct: 3 SLNPCIEVV----PNITYQCM----DQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSN 54
Query: 826 RKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYN 885
+LQ L L+ +ETI +K ++GL L L L N + F L +L L
Sbjct: 55 FSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVET 114
Query: 886 KIIYISNRTFLSLTHLKVLQLDHNRITSF 914
K+ + + L LK L + HN I S
Sbjct: 115 KLASLESFPIGQLITLKKLNVAHNFIHSC 143
Score = 84.7 bits (210), Expect = 7e-17
Identities = 31/160 (19%), Positives = 56/160 (35%), Gaps = 24/160 (15%)
Query: 806 TELYLDGNRI-PVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLT 864
L + GN S+ F L L L+ +E I F+ L L +L + N L
Sbjct: 451 NTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLL 510
Query: 865 EIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSSQIQ 924
+ + +L +L L +N+I L L +
Sbjct: 511 FLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTN---------------- 554
Query: 925 SITLTSNPWSCDCDFTEKFRDYLQRSRSSVHDISQIRCMT 964
N +C C+ +KF +++ + + ++ Q+ C T
Sbjct: 555 ------NSVACICE-HQKFLQWVKEQKQFLVNVEQMTCAT 587
Score = 75.5 bits (186), Expect = 5e-14
Identities = 31/135 (22%), Positives = 46/135 (34%), Gaps = 6/135 (4%)
Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
+ L L GN I SF G L+ L + + ++ + L L L + N +
Sbjct: 83 SNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHS 142
Query: 866 I-RGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLK----VLQLDHNRITSFAVWHLS 920
F L NL + L YN I I+ L L + N I
Sbjct: 143 CKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQ 202
Query: 921 S-QIQSITLTSNPWS 934
++ +TL N S
Sbjct: 203 GIKLHELTLRGNFNS 217
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto;
TLR2, PAM3CSK4, lipopeptide, innate immunity,
cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A
{Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A*
2z7x_A*
Length = 549
Score = 304 bits (781), Expect = 3e-91
Identities = 96/529 (18%), Positives = 189/529 (35%), Gaps = 47/529 (8%)
Query: 222 NLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNL 281
++ LDLS N + + LQ L L+ + + + A L SL L+LS N+L
Sbjct: 27 AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL 86
Query: 282 VNIPPELFNQSRDLKEVYLQNNSINVL-APGIFNVLTQLIVLDLSNNELTEEWVNAATFS 340
++ F LK + L N L +F LT L L + N E E + F+
Sbjct: 87 SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSE-IRRIDFA 145
Query: 341 GLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSN 400
GL L L I + S K + + L L ++ + LS++ L + +
Sbjct: 146 GLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRD 205
Query: 401 NKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDF----------HLNGNK 450
L R + + L S + + + + L + N
Sbjct: 206 TNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNG 265
Query: 451 LTEIPKV-------LRNLH--SLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNI 501
L + L + +++ L + + + + L ++ + + + + +
Sbjct: 266 LGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLV 325
Query: 502 SKGVFEKLSVLTILNLASNKIQKVEAGT---FDNNSNLVAIRLDGNYLTDI---GGLFPK 555
+ L L L+L+ N + + +L + L N+L + G +
Sbjct: 326 PCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLT 385
Query: 556 LPNLVWLNISENLLEWFDYALI-PADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSN 614
L NL L+IS N + P +++L++ I + L D S+N
Sbjct: 386 LKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIP----QTLEVLDVSNN 441
Query: 615 KLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISP 674
L + ++ L+++ N + + + F P L + + N+LK++
Sbjct: 442 NLDSFSLF--LPRLQELYISRNKLKTLPDASLF--PVLLVMKISRNQLKSVPDGIFDRLT 497
Query: 675 LPSHKNIPDFYIGENPFQCDCNMQ-WLQSYSVNKERNKPNLVDLDTVTC 722
++ ++ NP+ C C +L + NK + + + C
Sbjct: 498 -----SLQKIWLHTNPWDCSCPRIDYLSRW-----LNKNSQKEQGSAKC 536
Score = 233 bits (595), Expect = 5e-66
Identities = 84/475 (17%), Positives = 178/475 (37%), Gaps = 38/475 (8%)
Query: 101 SSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSL-DISH 159
+++ +F +L L+ L + + +LS+ F L LK L L N +
Sbjct: 63 NTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLM-GN------PYQTLGV 115
Query: 160 NVFTDELQSLESLDLS-MNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTAR 218
L +L++L + + + + F L SL+ L + L N + S +
Sbjct: 116 TSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIR--- 172
Query: 219 CGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSV 278
++ L L + L LS ++ L L+ L L + +
Sbjct: 173 ---DIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLA 229
Query: 279 NNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAAT 338
+ E FN+ L L+ + + L L + S +++ V+
Sbjct: 230 FRGSVLTDESFNELLKLLRYILELSEVEFD----DCTLNGLGDFNPSESDV----VSELG 281
Query: 339 FSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIM 398
+ L+I + S+++ L +++ + +EN+++ + + L +L L +
Sbjct: 282 KVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDL 341
Query: 399 SNNKLKRI---ESNSLDSLTALSVLSLDNNELEYIEE--NALKNSTSLQDFHLNGNKLTE 453
S N + S + +L L L N L +++ L +L ++ N
Sbjct: 342 SENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHP 401
Query: 454 IPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLT 513
+P + ++ L+L I + +L L ++ NN+ + S L L
Sbjct: 402 MPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEV---LDVSNNNLDSFSLF----LPRLQ 454
Query: 514 ILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDI-GGLFPKLPNLVWLNISEN 567
L ++ NK++ + + L+ +++ N L + G+F +L +L + + N
Sbjct: 455 ELYISRNKLKTLPDASLFP--VLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTN 507
Score = 161 bits (408), Expect = 1e-41
Identities = 63/320 (19%), Positives = 111/320 (34%), Gaps = 34/320 (10%)
Query: 100 QSSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSL---- 155
+ + + L+ SF L KL L ++ +L
Sbjct: 208 LARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLG 267
Query: 156 -------DISHNVFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVAT 208
D+ + E ++ L + ++ ++ L+ + + + +K+ V
Sbjct: 268 DFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPC 327
Query: 209 FSFSNYDTARCGINLRVLDLSNNSFDSLPAEG---FSRLSRLQELYLQGNILTFL--ADH 263
+ +L LDLS N + LQ L L N L +
Sbjct: 328 SFSQHLK------SLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGE 381
Query: 264 ALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLD 323
L L +LT L++S N +P ++ + L + I V+ I L VLD
Sbjct: 382 ILLTLKNLTSLDISRNTFHPMPDS-CQWPEKMRFLNLSSTGIRVVKTCIP---QTLEVLD 437
Query: 324 LSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIH 383
+SNN L L RL L I+ NK+ L + L V+ + NQ++S+
Sbjct: 438 VSNNNLDS------FSLFLPRLQELYISRNKLKTLPDASL--FPVLLVMKISRNQLKSVP 489
Query: 384 RNTFASLSNLHTLIMSNNKL 403
F L++L + + N
Sbjct: 490 DGIFDRLTSLQKIWLHTNPW 509
Score = 150 bits (380), Expect = 5e-38
Identities = 82/476 (17%), Positives = 146/476 (30%), Gaps = 92/476 (19%)
Query: 446 LNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGV 505
T IP L ++K+LDL N IT I + L + L L L + I+ I
Sbjct: 12 GRSRSFTSIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDA 69
Query: 506 FEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIG--GLFPKLPNLVWLN 563
F L L L+L+ N + + + F S+L + L GN +G LFP L NL L
Sbjct: 70 FYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLR 129
Query: 564 ISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNA 623
I SE+ LT
Sbjct: 130 IGNV---------------------ETFSEI-----------------RRIDFAGLT--- 148
Query: 624 IPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHKNIPD 683
S+ L + + Q + ++ + L + + + I
Sbjct: 149 ---SLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILS--------- 196
Query: 684 FYIGENPFQCDCNMQWLQSYSVNKERNKPNLVDLDTVTCKLLYNRANPAILLKEAHSNQF 743
++++L+ N R + + + +D V+ + ++L S
Sbjct: 197 ------------SVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLT--DESFNE 242
Query: 744 LCEYETNCAPLCHCCDFDACDCEMTCPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPM 803
L + L D CT + + D + +
Sbjct: 243 LLKLLRYILELSEVEFDD-----------CTLNGLGDFNPSESDVVSELGKVETV----- 286
Query: 804 DATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRL 863
L++ + S + +K++ + + +S V + LK L L L +N +
Sbjct: 287 TIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLM 346
Query: 864 TEIRGYE---FERLENLRELYLQYNKIIYISN--RTFLSLTHLKVLQLDHNRITSF 914
E +L+ L L N + + L+L +L L + N
Sbjct: 347 VEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPM 402
Score = 132 bits (335), Expect = 2e-32
Identities = 48/331 (14%), Positives = 112/331 (33%), Gaps = 50/331 (15%)
Query: 389 SLSNLHTLIMSNNKLK---------------------RIESNSLDSLTALSVLSLDNNEL 427
S + I L + L VL L ++ +
Sbjct: 3 SCDASGVCDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRI 62
Query: 428 EYIEENALKNSTSLQDFHLNGNKLTEIPK-VLRNLHSLKTLDLGDNLITEI-NNLSLNSL 485
IE +A + SL+ L+ N L+ + L SLK L+L N + +L
Sbjct: 63 NTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNL 122
Query: 486 HQLAGLRLTENN-ISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGN 544
L LR+ S I + F L+ L L + + ++ ++ + + ++ + L +
Sbjct: 123 TNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLS 182
Query: 545 YLTDIG-GLFPKLPNLVWLNISENLLEWFDYALIPAD-----LQWLDIHGNQISELGNYF 598
+ L ++ +L + + L F ++ +P D ++ L G+ +++ F
Sbjct: 183 ESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDE--SF 240
Query: 599 EIESQLRLTYFDASSNKLTELTGNAIPH------------------SVENLFLTNNLISK 640
+L + S + + T N + ++ L + +
Sbjct: 241 NELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFY 300
Query: 641 VQPYTFFMKPNLTRVDLVGNRLKNINQTALR 671
+ + + R+ + +++ + + +
Sbjct: 301 DLSTVYSLLEKVKRITVENSKVFLVPCSFSQ 331
Score = 129 bits (326), Expect = 3e-31
Identities = 48/232 (20%), Positives = 92/232 (39%), Gaps = 22/232 (9%)
Query: 98 FFQSSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDI 157
F+ + L +K ++VE K+ + + L+ L+ L L + N + +
Sbjct: 296 FYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDL-SEN---LMVEEYL 351
Query: 158 SHNVFTDELQSLESLDLSMNSIWTLPDA--IFCPLQSLSYLNLTQNKLSNVATFSFSNYD 215
++ SL++L LS N + ++ I L++L+ L++++N D
Sbjct: 352 KNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-------PMPD 404
Query: 216 TARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLN 275
+ + +R L+LS+ + L+ L + N L + L L L
Sbjct: 405 SCQWPEKMRFLNLSSTGIRVVKTCIP---QTLEVLDVSNNNLDSFSLF----LPRLQELY 457
Query: 276 LSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNN 327
+S N L +P L + + N + + GIF+ LT L + L N
Sbjct: 458 ISRNKLKTLPDASLFPV--LLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTN 507
Score = 117 bits (296), Expect = 2e-27
Identities = 79/583 (13%), Positives = 161/583 (27%), Gaps = 143/583 (24%)
Query: 463 SLKTLDLGDNLITEI-NNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNK 521
+ D T I + L+ + L L+ N I+ I G + L +L L S++
Sbjct: 6 ASGVCDGRSRSFTSIPSGLTAA----MKSLDLSFNKITYIGHGDLRACANLQVLILKSSR 61
Query: 522 IQKVEAGTFDNNSNLVAIRLDGNYLTDI-GGLFPKLPNLVWLNISENLLEWFDYALIPAD 580
I +E F + +L + L N+L+ + F L +L
Sbjct: 62 INTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSL--------------------- 100
Query: 581 LQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPHSVENLFLTNNLISK 640
++L++ GN LG + L + S+
Sbjct: 101 -KYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNV---------------------ETFSE 138
Query: 641 VQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLP-------SHKNIPDFYIGENPFQC 693
++ F +L +++ L+N + + + + E
Sbjct: 139 IRRIDFAGLTSLNELEIKALSLRNYQSQS--LKSIRDIHHLTLHLSESAF--LLEIFADI 194
Query: 694 DCNMQWLQSYSVNKERNKPNLVDLDTVTCKLLYNRANPAILLKEAHSNQFLCEYETNCAP 753
++++L+ N R + + + +D V+ + ++L E+ +
Sbjct: 195 LSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELS 254
Query: 754 LCHCCDF------DACDCEMTCPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDAT- 806
D D E + V+ I Y +
Sbjct: 255 EVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHI---PQFYLFYDLSTVYSLLEK 311
Query: 807 --ELYLDGNRIPVVGSHSFIGRKKLQIL-----------------FLNSSHVETI---HN 844
+ ++ +++ +V K L+ L ++T+ N
Sbjct: 312 VKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN 371
Query: 845 K---------TFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTF 895
LK L L + N + + E +R L L I +
Sbjct: 372 HLRSMQKTGEILLTLKNLTSLDISRNTFHPM-PDSCQWPEKMRFLNLSSTGIRVVKTCIP 430
Query: 896 LSLTH-----------------LKVLQLDHNRITSFAVWHLSSQ---------------- 922
+L L+ L + N++ + L
Sbjct: 431 QTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPDASLFPVLLVMKISRNQLKSVPD 490
Query: 923 --------IQSITLTSNPWSCDCDFTEKFRDYLQRSRSSVHDI 957
+Q I L +NPW C C + +L ++
Sbjct: 491 GIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGS 533
Score = 90.9 bits (226), Expect = 6e-19
Identities = 37/147 (25%), Positives = 58/147 (39%), Gaps = 13/147 (8%)
Query: 768 TCPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRK 827
+C + C D + + +P + L L N+I +G
Sbjct: 3 SCDASGVC-----------DGRSRSF-TSIPSGLTAAMKSLDLSFNKITYIGHGDLRACA 50
Query: 828 KLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKI 887
LQ+L L SS + TI F L L L L DN L+ + F L +L+ L L N
Sbjct: 51 NLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPY 110
Query: 888 IYISNR-TFLSLTHLKVLQLDHNRITS 913
+ F +LT+L+ L++ + S
Sbjct: 111 QTLGVTSLFPNLTNLQTLRIGNVETFS 137
>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat,
glycoprotein, immune response, inflamma response, innate
immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO
MYR NAG GCS; 3.10A {Homo sapiens}
Length = 605
Score = 300 bits (770), Expect = 5e-89
Identities = 123/599 (20%), Positives = 218/599 (36%), Gaps = 71/599 (11%)
Query: 151 STMSLDISHNVFTDE-------LQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKL 203
ST +LD+S N L+ LDLS I T+ D + L LS L LT N +
Sbjct: 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88
Query: 204 SNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFL-AD 262
++A +FS +L+ L + SL L L+EL + N++
Sbjct: 89 QSLALGAFSG------LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP 142
Query: 263 HALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLK----EVYLQNNSINVLAPGIFNVLTQ 318
L +L L+LS N + +I + + L N +N + PG F +
Sbjct: 143 EYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIR 201
Query: 319 LIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNK------MNKLDSSIFKDLYRLQVL 372
L L L NN + V GL L V + + + K D S + L L +
Sbjct: 202 LHKLTLRNNFDSLN-VMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260
Query: 373 HLENNQIESIHRN---TFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEY 429
++ + F L+N+ + + + ++R++ S L L N +
Sbjct: 261 EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY--NFGWQHLELVNCKFGQ 318
Query: 430 IEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLA 489
LK+ L G +L SL+ LDL N ++ S +
Sbjct: 319 FPTLKLKSLKRLTFTSNKGGNAFS----EVDLPSLEFLDLSRNGLSFKGCCSQS------ 368
Query: 490 GLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDI 549
+ L L+L+ N + + + F L + + L +
Sbjct: 369 ----------------DFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQM 411
Query: 550 --GGLFPKLPNLVWLNISENLLEWFDYALIP--ADLQWLDIHGNQISELGNYFEIESQLR 605
+F L NL++L+IS + + L+ L + GN E
Sbjct: 412 SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN 471
Query: 606 LTYFDASSNKLTELTGNAIP--HSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLK 663
LT+ D S +L +L+ A S++ L +++N + + + +L +D N +
Sbjct: 472 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 531
Query: 664 NINQTALRISPLPSHKNIPDFYIGENPFQCDCNMQWLQSYSVNKERNKPNLVDLDTVTC 722
+ L+ P ++ + +N F C C Q + + + LV+++ + C
Sbjct: 532 TSKKQELQHFP----SSLAFLNLTQNDFACTCEHQSFLQWIKD---QRQLLVEVERMEC 583
Score = 213 bits (544), Expect = 7e-59
Identities = 88/439 (20%), Positives = 154/439 (35%), Gaps = 32/439 (7%)
Query: 99 FQSSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDIS 158
QS P F L +L+ L + KI ++ R L ++ L L SLD+S
Sbjct: 136 IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL----------SLDLS 185
Query: 159 HNVFTD------ELQSLESLDLSMNSI-WTLPDAIFCPLQSLSYLNLTQNKLSNVATFSF 211
N + L L L N + L L L + N
Sbjct: 186 LNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEK 245
Query: 212 SNYDTARCGINLRVLDLSNNSFDSLP---AEGFSRLSRLQELYLQGNILTFLADHALDGL 268
+ NL + + D + F+ L+ + L + + D
Sbjct: 246 FDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--FSYN 303
Query: 269 NSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNE 328
L L P + L + + L L LDLS N
Sbjct: 304 FGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFS-----EVDLPSLEFLDLSRNG 358
Query: 329 LTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIES-IHRNTF 387
L+ + + + G L L++++N + + S+ F L +L+ L +++ ++ + F
Sbjct: 359 LSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVF 417
Query: 388 ASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNEL-EYIEENALKNSTSLQDFHL 446
SL NL L +S+ + + + L++L VL + N E + +L L
Sbjct: 418 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 477
Query: 447 NGNKLTEI-PKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGV 505
+ +L ++ P +L SL+ L++ N ++ L+ L L + N+I K
Sbjct: 478 SQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 537
Query: 506 FEKL-SVLTILNLASNKIQ 523
+ S L LNL N
Sbjct: 538 LQHFPSSLAFLNLTQNDFA 556
Score = 187 bits (477), Expect = 4e-50
Identities = 91/430 (21%), Positives = 160/430 (37%), Gaps = 50/430 (11%)
Query: 101 SSLSPGSFQTLIDLKDLSVEFCKI-GNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISH 159
+ + PG+F+ I L L++ N+ +GL L+ L
Sbjct: 190 NFIQPGAFK-EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDK 248
Query: 160 NVFTDELQSLESLDLSMNSIWTLPDAI---FCPLQSLSYLNLTQNKLSNVATFSFSNYDT 216
+ L +L + + + D I F L ++S +L + V FS++
Sbjct: 249 SALEG-LCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF--- 304
Query: 217 ARCGINLRVLDLSNNSFDSLPAEGFSR-------------------LSRLQELYLQGNIL 257
+ L+L N F P L L+ L L N L
Sbjct: 305 -----GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGL 359
Query: 258 TF--LADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAP-GIFN 314
+F + G SL L+LS N ++ + L+ + Q++++ ++ +F
Sbjct: 360 SFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFL 418
Query: 315 VLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNK-LDSSIFKDLYRLQVLH 373
L LI LD+S+ F+GL L VL +A N + IF +L L L
Sbjct: 419 SLRNLIYLDISHTHTRV--AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 476
Query: 374 LENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEEN 433
L Q+E + F SLS+L L MS+N +++ L +L VL N + ++
Sbjct: 477 LSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ 536
Query: 434 ALKNS-TSLQDFHLNGNKLT---EIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLA 489
L++ +SL +L N E L+ + + L + + + +
Sbjct: 537 ELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVE------VERMECATPSDKQ 590
Query: 490 GLRLTENNIS 499
G+ + NI+
Sbjct: 591 GMPVLSLNIT 600
Score = 100 bits (252), Expect = 6e-22
Identities = 35/163 (21%), Positives = 67/163 (41%), Gaps = 5/163 (3%)
Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSH-VETIHNKTFNGLKELIILRLDDNRLT 864
L + V + F G L++L + + E F L+ L L L +L
Sbjct: 424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 483
Query: 865 EIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSF---AVWHLSS 921
++ F L +L+ L + +N + + L L+VL N I + + H S
Sbjct: 484 QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPS 543
Query: 922 QIQSITLTSNPWSCDCDFTEKFRDYLQRSRSSVHDISQIRCMT 964
+ + LT N ++C C+ F +++ R + ++ ++ C T
Sbjct: 544 SLAFLNLTQNDFACTCEHQS-FLQWIKDQRQLLVEVERMECAT 585
Score = 90.5 bits (225), Expect = 1e-18
Identities = 35/130 (26%), Positives = 57/130 (43%), Gaps = 1/130 (0%)
Query: 785 VIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHN 844
C + ++P +P L L N + +GS+SF +LQ+L L+ ++TI +
Sbjct: 11 TYQCMELNF-YKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED 69
Query: 845 KTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVL 904
+ L L L L N + + F L +L++L + + N L LK L
Sbjct: 70 GAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL 129
Query: 905 QLDHNRITSF 914
+ HN I SF
Sbjct: 130 NVAHNLIQSF 139
Score = 69.7 bits (171), Expect = 3e-12
Identities = 34/135 (25%), Positives = 51/135 (37%), Gaps = 6/135 (4%)
Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
+ L L GN I + +F G LQ L +++ ++ N LK L L + N +
Sbjct: 79 STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS 138
Query: 866 I-RGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKV----LQLDHNRITSFAVWHLS 920
F L NL L L NKI I L + + L L N +
Sbjct: 139 FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK 198
Query: 921 S-QIQSITLTSNPWS 934
++ +TL +N S
Sbjct: 199 EIRLHKLTLRNNFDS 213
Score = 57.0 bits (138), Expect = 3e-08
Identities = 22/110 (20%), Positives = 37/110 (33%), Gaps = 8/110 (7%)
Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLT- 864
L L + + K+L + + L L L L N L+
Sbjct: 307 QHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNA-----FSEVDLPSLEFLDLSRNGLSF 361
Query: 865 -EIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITS 913
+L+ L L +N +I +S+ FL L L+ L H+ +
Sbjct: 362 KGCCSQSDFGTTSLKYLDLSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQ 410
Score = 51.6 bits (124), Expect = 1e-06
Identities = 15/110 (13%), Positives = 30/110 (27%), Gaps = 5/110 (4%)
Query: 809 YLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNK---TFNGLKELIILRLDDNRLTE 865
+ + + + G L I ++++ + FN L + L +
Sbjct: 237 FRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER 296
Query: 866 IRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFA 915
++ +F + L L K SL L S
Sbjct: 297 VK--DFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEV 344
Score = 45.4 bits (108), Expect = 1e-04
Identities = 18/134 (13%), Positives = 42/134 (31%), Gaps = 24/134 (17%)
Query: 820 SHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFER------ 873
F + L S +E + + ++ L L + + + + +
Sbjct: 275 IDLFNCLTNVSSFSLVSVTIERVKDFSY--NFGWQHLELVNCKFGQFPTLKLKSLKRLTF 332
Query: 874 -------------LENLRELYLQYNKI--IYISNRTFLSLTHLKVLQLDHNRITSF-AVW 917
L +L L L N + +++ T LK L L N + + + +
Sbjct: 333 TSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNF 392
Query: 918 HLSSQIQSITLTSN 931
Q++ + +
Sbjct: 393 LGLEQLEHLDFQHS 406
Score = 40.4 bits (95), Expect = 0.004
Identities = 22/142 (15%), Positives = 48/142 (33%), Gaps = 17/142 (11%)
Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQI----LFLNSSHVETIHNKTFNGLKELIILRLDDN 861
L L N+I + ++ + L L+ + + I F ++ L L L +N
Sbjct: 152 EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LHKLTLRNN 210
Query: 862 RLT-EIRGYEFERLENLRELYLQYNKI---IYISNRTFLSLTHLKVLQLDHNRITS---- 913
+ + + L L L + + +L L L ++ R+
Sbjct: 211 FDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYY 270
Query: 914 ----FAVWHLSSQIQSITLTSN 931
+++ + + S +L S
Sbjct: 271 LDDIIDLFNCLTNVSSFSLVSV 292
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS,
immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Length = 570
Score = 283 bits (727), Expect = 1e-83
Identities = 98/572 (17%), Positives = 189/572 (33%), Gaps = 79/572 (13%)
Query: 215 DTARCGINLRVLDLSNNSFDS---------------------LPAEGFSRLSRLQELYLQ 253
+ + +F L + F LQ L L
Sbjct: 1 EPCVEVVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLS 60
Query: 254 GNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIF 313
+ + D A L+ L+ L L+ N + ++ F+ L+++ ++ L
Sbjct: 61 RCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPI 120
Query: 314 NVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQV-- 371
L L L++++N + + FS L L L+++ NK+ + + + L+++ +
Sbjct: 121 GHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 179
Query: 372 --LHLENNQIESIHRNTFASLSNLHTLIMSNNKLK-RIESNSLDSLTALSVLSL------ 422
L L N + I F + LH L + NN + + L L V L
Sbjct: 180 LSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFR 238
Query: 423 DNNELEYIEENALKNSTSLQDFHLNGNKL----TEIPKVLRNLHSLKTLDLGDNLITEI- 477
+ LE +++AL+ +L L +I + L ++ + L I +
Sbjct: 239 NEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVK 298
Query: 478 ------------------NNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLAS 519
L L L T N N L L L+L+
Sbjct: 299 DFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSR 356
Query: 520 NKIQKVE--AGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYALI 577
N + + + ++L + L N + + F L L L+ + L+ +
Sbjct: 357 NGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSV 416
Query: 578 ---PADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPHSVENLF-- 632
+L +LDI N L + N E I + NL
Sbjct: 417 FLSLRNLIYLDISHTHTRVAFNGI-FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 475
Query: 633 -LTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHKNIPDFYIGENPF 691
L+ + ++ P F +L +++ N+LK++ ++ ++ NP+
Sbjct: 476 DLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGI-----FDRLTSLQKIWLHTNPW 530
Query: 692 QCDCNMQ-WLQSYSVNKERNKPNLVDLDTVTC 722
C C +L + NK + + + C
Sbjct: 531 DCSCPRIDYLSRWL-----NKNSQKEQGSAKC 557
Score = 258 bits (662), Expect = 8e-75
Identities = 109/512 (21%), Positives = 189/512 (36%), Gaps = 41/512 (8%)
Query: 101 SSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSL-DISH 159
L SF + +L+ L + C+I + G+++ L L TL L T N + ++
Sbjct: 41 RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLIL-TGN------PIQSLAL 93
Query: 160 NVFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARC 219
F L SL+ L ++ +L + L++L LN+ N + SF +
Sbjct: 94 GAF-SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ-----SFKLPEYFSN 147
Query: 220 GINLRVLDLSNNSFDSLPAEGFSRLSRLQ----ELYLQGNILTFLADHALDGLNSLTVLN 275
NL LDLS+N S+ L ++ L L N + F+ A + L L
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LHKLT 206
Query: 276 LSVNNL-VNIPPELFNQSRDLKEVYLQ------NNSINVLAPGIFNVLTQLIVLDLSNNE 328
L N +N+ L+ L ++ L L + +
Sbjct: 207 LRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 266
Query: 329 LTEEWVN-AATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTF 387
L + F+ L + ++ + ++ + + Q L L N +
Sbjct: 267 LDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY--NFGWQHLELVNCKFGQF---PT 321
Query: 388 ASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIE--ENALKNSTSLQDFH 445
L +L L ++NK S L +L L L N L + + +TSL+
Sbjct: 322 LKLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLD 379
Query: 446 LNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLS-LNSLHQLAGLRLTENNISNISKG 504
L+ N + + L L+ LD + + +++ S SL L L ++ + G
Sbjct: 380 LSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 439
Query: 505 VFEKLSVLTILNLASNKIQK-VEAGTFDNNSNLVAIRLDGNYLTDI-GGLFPKLPNLVWL 562
+F LS L +L +A N Q+ F NL + L L + F L +L L
Sbjct: 440 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 499
Query: 563 NISENLLEWFDYALIPA--DLQWLDIHGNQIS 592
N++ N L+ + LQ + +H N
Sbjct: 500 NMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531
Score = 227 bits (580), Expect = 7e-64
Identities = 117/588 (19%), Positives = 197/588 (33%), Gaps = 72/588 (12%)
Query: 391 SNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNK 450
+ L +S N L+ + S S S L VL L E++ IE+ A ++ + L L GN
Sbjct: 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87
Query: 451 LTEIPK-VLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKG-VFEK 508
+ + L SL+ L + + + N + L L L + N I + F
Sbjct: 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147
Query: 509 LSVLTILNLASNKIQKVEAGTFDNNSNL----VAIRLDGNYLTDIGGLFPKLPNLVWLNI 564
L+ L L+L+SNKIQ + + +++ L N + I K L L +
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTL 207
Query: 565 SENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASS-NKLTELTGNA 623
N L L++H + E ++ L FD S+ L LT
Sbjct: 208 RNNFDSLNVMKTCIQGLAGLEVHRLVLG------EFRNEGNLEKFDKSALEGLCNLTIE- 260
Query: 624 IPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHKNIPD 683
E + F N++ LV ++ +
Sbjct: 261 -----EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERV------------------ 297
Query: 684 FYIGENPFQCDCNMQWLQSYSVNKERNKPNLVDLDTVTCKLLYNRANPAILLKEAHSNQF 743
F + Q L+ K P L N+ A + S +F
Sbjct: 298 -----KDFSYNFGWQHLE-LVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEF 351
Query: 744 LCEYETNCAPLCHCCDFDACDCEMTCPNNCTCYHDVSWEANVIDCSTGGYDNQL---PPR 800
L D ++ C+ + +D S N +
Sbjct: 352 L----------------DLSRNGLSFKGCCSQSDFGTTSLKYLDLS----FNGVITMSSN 391
Query: 801 IP--MDATELYLDGNRIPVVGSHS-FIGRKKLQILFLNSSHVETIHNKTFNGLKELIILR 857
L + + + S F+ + L L ++ +H N FNGL L +L+
Sbjct: 392 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK 451
Query: 858 LDDNRLTE-IRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAV 916
+ N E F L NL L L ++ +S F SL+ L+VL + N++ S
Sbjct: 452 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPD 511
Query: 917 WHLS--SQIQSITLTSNPWSCDCDFTEKFRDYLQRSRSSVHDISQIRC 962
+ +Q I L +NPW C C + +L ++ ++
Sbjct: 512 GIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSG 559
Score = 202 bits (516), Expect = 2e-55
Identities = 86/434 (19%), Positives = 152/434 (35%), Gaps = 47/434 (10%)
Query: 99 FQSSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDIS 158
QS P F L +L+ L + KI ++ R L ++ L L
Sbjct: 136 IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL--------------- 180
Query: 159 HNVFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLS-NVATFSFSNYDTA 217
SLDLS+N + + F + L L L N S NV
Sbjct: 181 ------------SLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGL 227
Query: 218 RCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLAD---HALDGLNSLTVL 274
+ + + + L L + L + D + L +++
Sbjct: 228 EVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSF 287
Query: 275 NLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWV 334
+L + + +N + + L N L L L ++N+
Sbjct: 288 SLVSVTIERVKDFSYNFG--WQHLELVNCKFGQFP---TLKLKSLKRLTFTSNKGG---- 338
Query: 335 NAATFSGLHRLVVLNIAYNKMNKLD--SSIFKDLYRLQVLHLENNQIESIHRNTFASLSN 392
NA + L L L+++ N ++ S L+ L L N + ++ N F L
Sbjct: 339 NAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQ 397
Query: 393 LHTLIMSNNKLKRIESNS-LDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKL 451
L L ++ LK++ S SL L L + + +SL+ + GN
Sbjct: 398 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 457
Query: 452 TEI--PKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKL 509
E P + L +L LDL + +++ + NSL L L + N + ++ G+F++L
Sbjct: 458 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRL 517
Query: 510 SVLTILNLASNKIQ 523
+ L + L +N
Sbjct: 518 TSLQKIWLHTNPWD 531
Score = 102 bits (255), Expect = 2e-22
Identities = 38/155 (24%), Positives = 66/155 (42%), Gaps = 4/155 (2%)
Query: 784 NVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIH 843
C + ++P +P L L N + +GS+SF +LQ+L L+ ++TI
Sbjct: 10 ITYQCMELNF-YKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE 68
Query: 844 NKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKV 903
+ + L L L L N + + F L +L++L + + N L LK
Sbjct: 69 DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 128
Query: 904 LQLDHNRITSFAVWHL---SSQIQSITLTSNPWSC 935
L + HN I SF + + ++ + L+SN
Sbjct: 129 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 273 bits (701), Expect = 4e-81
Identities = 81/331 (24%), Positives = 141/331 (42%), Gaps = 8/331 (2%)
Query: 218 RCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLS 277
C R + F ++P + + L L N + L L L L+
Sbjct: 8 ECSAQDRAVLCHRKRFVAVPEGIPTET---RLLDLGKNRIKTLNQDEFASFPHLEELELN 64
Query: 278 VNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAA 337
N + + P FN +L+ + L++N + ++ G+F L+ L LD+S N++ +
Sbjct: 65 ENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVI--LLDY 122
Query: 338 TFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLI 397
F L+ L L + N + + F L L+ L LE + SI + L L L
Sbjct: 123 MFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLR 182
Query: 398 MSNNKLKRIESNSLDSLTALSVLSL-DNNELEYIEENALKNSTSLQDFHLNGNKLTEIP- 455
+ + + I S L L VL + L+ + N L +L + LT +P
Sbjct: 183 LRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYG-LNLTSLSITHCNLTAVPY 241
Query: 456 KVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTIL 515
+R+L L+ L+L N I+ I L+ L +L ++L ++ + F L+ L +L
Sbjct: 242 LAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVL 301
Query: 516 NLASNKIQKVEAGTFDNNSNLVAIRLDGNYL 546
N++ N++ +E F + NL + LD N L
Sbjct: 302 NVSGNQLTTLEESVFHSVGNLETLILDSNPL 332
Score = 247 bits (633), Expect = 6e-72
Identities = 81/306 (26%), Positives = 135/306 (44%), Gaps = 9/306 (2%)
Query: 168 SLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLD 227
LDL N I TL F L L L +N +S V +F+N NLR L
Sbjct: 33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLF------NLRTLG 86
Query: 228 LSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPE 287
L +N +P F+ LS L +L + N + L D+ L +L L + N+LV I
Sbjct: 87 LRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHR 146
Query: 288 LFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVV 347
F+ L+++ L+ ++ + + L LIVL L + + + +F L+RL V
Sbjct: 147 AFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINA--IRDYSFKRLYRLKV 204
Query: 348 LNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIE 407
L I++ + L L + + + ++ L L L +S N + IE
Sbjct: 205 LEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIE 264
Query: 408 SNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPK-VLRNLHSLKT 466
+ L L L + L +L +E A + L+ +++GN+LT + + V ++ +L+T
Sbjct: 265 GSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLET 324
Query: 467 LDLGDN 472
L L N
Sbjct: 325 LILDSN 330
Score = 236 bits (604), Expect = 5e-68
Identities = 81/339 (23%), Positives = 137/339 (40%), Gaps = 39/339 (11%)
Query: 113 DLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHNVFTDELQSLESL 172
+ + L + +I L+ F LE L
Sbjct: 33 ETRLLDLGKNRIKTLNQDEFASFPH-------------------------------LEEL 61
Query: 173 DLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNS 232
+L+ N + + F L +L L L N+L + F+ NL LD+S N
Sbjct: 62 ELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLS------NLTKLDISENK 115
Query: 233 FDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQS 292
L F L L+ L + N L +++ A GLNSL L L NL +IP E +
Sbjct: 116 IVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHL 175
Query: 293 RDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAY 352
L + L++ +IN + F L +L VL++S+ + + GL+ L L+I +
Sbjct: 176 HGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDT-MTPNCLYGLN-LTSLSITH 233
Query: 353 NKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLD 412
+ + + L L+ L+L N I +I + L L + + +L +E +
Sbjct: 234 CNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFR 293
Query: 413 SLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKL 451
L L VL++ N+L +EE+ + +L+ L+ N L
Sbjct: 294 GLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332
Score = 227 bits (581), Expect = 6e-65
Identities = 93/488 (19%), Positives = 166/488 (34%), Gaps = 102/488 (20%)
Query: 292 SRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIA 351
S + V + GI T+ +LDL N + +N F+ L L +
Sbjct: 10 SAQDRAVLCHRKRFVAVPEGIP---TETRLLDLGKNRIKT--LNQDEFASFPHLEELELN 64
Query: 352 YNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSL 411
N ++ ++ F +L+ L+ L L +N+++ I F LSNL L +S NK+ +
Sbjct: 65 ENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMF 124
Query: 412 DSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPK-VLRNLHSLKTLDLG 470
L L L + +N+L YI A SL+ L LT IP L +LH L L L
Sbjct: 125 QDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLR 184
Query: 471 DNLITEINNLSLNSLHQLAGLRLTENN-ISNISKGVFEKLSVLTILNLASNKIQKVEAGT 529
I I + S L++L L ++ + ++ L+ LT L++ + V
Sbjct: 185 HLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLN-LTSLSITHCNLTAVPYLA 243
Query: 530 FDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGN 589
L L ++L++ N
Sbjct: 244 -----------------------VRHLVYL----------------------RFLNLSYN 258
Query: 590 QISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMK 649
IS + L L + + L ++ V+PY F
Sbjct: 259 PISTIEG-------------SMLHE-LLRL---------QEIQLVGGQLAVVEPYAFRGL 295
Query: 650 PNLTRVDLVGNRLKNINQTALRISPLPSHKNIPDFYIGENPFQCDCNMQWLQSYSVNKER 709
L +++ GN+L + ++ + + + + + NP CDC + W+
Sbjct: 296 NYLRVLNVSGNQLTTLEESVF--HSVGNLETL---ILDSNPLACDCRLLWVFRRRWRLNF 350
Query: 710 NKPNL---------------VDLDTVTCKL------LYNRANPAILLKEAHSNQFLCEYE 748
N+ + + +R + + E H+ QF+C +
Sbjct: 351 NRQQPTCATPEFVQGKEFKDFPDVLLPNYFTCRRARIRDRKAQQVFVDEGHTVQFVCRAD 410
Query: 749 TNCAPLCH 756
+ P
Sbjct: 411 GDPPPAIL 418
Score = 224 bits (574), Expect = 5e-64
Identities = 78/304 (25%), Positives = 137/304 (45%), Gaps = 17/304 (5%)
Query: 101 SSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSL-DISH 159
+L+ F + L++L + + + G+F L L+TL LR N L I
Sbjct: 45 KTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLR-SN------RLKLIPL 97
Query: 160 NVFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARC 219
VFT L +L LD+S N I L D +F L +L L + N L ++ +FS +
Sbjct: 98 GVFTG-LSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLN---- 152
Query: 220 GINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVN 279
+L L L + S+P E S L L L L+ + + D++ L L VL +S
Sbjct: 153 --SLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHW 210
Query: 280 NLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATF 339
++ +L + + + ++ + L L L+LS N ++ + +
Sbjct: 211 PYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS--TIEGSML 268
Query: 340 SGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMS 399
L RL + + ++ ++ F+ L L+VL++ NQ+ ++ + F S+ NL TLI+
Sbjct: 269 HELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILD 328
Query: 400 NNKL 403
+N L
Sbjct: 329 SNPL 332
Score = 132 bits (335), Expect = 8e-33
Identities = 49/166 (29%), Positives = 71/166 (42%), Gaps = 9/166 (5%)
Query: 769 CPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKK 828
CP C C S + + C + +P IP + L L NRI + F
Sbjct: 3 CPPRCEC----SAQDRAVLCHRKRFV-AVPEGIPTETRLLDLGKNRIKTLNQDEFASFPH 57
Query: 829 LQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKII 888
L+ L LN + V + FN L L L L NRL I F L NL +L + NKI+
Sbjct: 58 LEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIV 117
Query: 889 YISNRTFLSLTHLKVLQLDHNRITSF---AVWHLSSQIQSITLTSN 931
+ + F L +LK L++ N + A L+S ++ +TL
Sbjct: 118 ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNS-LEQLTLEKC 162
Score = 110 bits (278), Expect = 2e-25
Identities = 33/159 (20%), Positives = 62/159 (38%), Gaps = 6/159 (3%)
Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
L + + + + L L + ++ + L L L L N ++
Sbjct: 203 KVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIST 262
Query: 866 IRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFA--VWHLSSQI 923
I G L L+E+ L ++ + F L +L+VL + N++T+ V+H +
Sbjct: 263 IEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNL 322
Query: 924 QSITLTSNPWSCDCDFTEKFRDYLQRSRSSVHDISQIRC 962
+++ L SNP +CDC +R + Q C
Sbjct: 323 ETLILDSNPLACDCR----LLWVFRRRWRLNFNRQQPTC 357
Score = 95.6 bits (238), Expect = 2e-20
Identities = 35/132 (26%), Positives = 60/132 (45%), Gaps = 4/132 (3%)
Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
L + N + + +F G L+ L L ++ +I + + L LI+LRL +
Sbjct: 131 KSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINA 190
Query: 866 IRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSF---AVWHLSSQ 922
IR Y F+RL L+ L + + + L +L L + H +T+ AV HL
Sbjct: 191 IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVY- 249
Query: 923 IQSITLTSNPWS 934
++ + L+ NP S
Sbjct: 250 LRFLNLSYNPIS 261
Score = 94.8 bits (236), Expect = 3e-20
Identities = 30/108 (27%), Positives = 50/108 (46%)
Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
T+L + N+I ++ + F L+ L + + + I ++ F+GL L L L+ LT
Sbjct: 107 TKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS 166
Query: 866 IRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITS 913
I L L L L++ I I + +F L LKVL++ H
Sbjct: 167 IPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLD 214
Score = 81.3 bits (201), Expect = 5e-16
Identities = 33/157 (21%), Positives = 58/157 (36%), Gaps = 38/157 (24%)
Query: 99 FQSSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDIS 158
+ +++P L +L LS+ C + + + R L L+
Sbjct: 212 YLDTMTPNCLYGL-NLTSLSITHCNLTAVPYLAVRHLVYLRF------------------ 252
Query: 159 HNVFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTAR 218
L+LS N I T+ ++ L L + L +L+ V ++F +
Sbjct: 253 -------------LNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLN--- 296
Query: 219 CGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGN 255
LRVL++S N +L F + L+ L L N
Sbjct: 297 ---YLRVLNVSGNQLTTLEESVFHSVGNLETLILDSN 330
Score = 66.7 bits (163), Expect = 2e-11
Identities = 22/105 (20%), Positives = 46/105 (43%), Gaps = 9/105 (8%)
Query: 101 SSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSL-DISH 159
+++ + + L+ L+ L++ + I + L +L+ + L L +
Sbjct: 237 TAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQL-VGG------QLAVVEP 289
Query: 160 NVFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLS 204
F L L L++S N + TL +++F + +L L L N L+
Sbjct: 290 YAFRG-LNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein;
HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A*
1xcd_A*
Length = 330
Score = 246 bits (629), Expect = 4e-73
Identities = 80/350 (22%), Positives = 140/350 (40%), Gaps = 50/350 (14%)
Query: 183 PDAIFCPLQ---SLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAE 239
P CP + L + + L V + +LDL NN +
Sbjct: 20 PMGPVCPFRCQCHLRVVQCSDLGLEKVPKDLPPD---------TALLDLQNNKITEIKDG 70
Query: 240 GFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVY 299
F L L L L N ++ ++ A L L L LS N L +P ++ + L+E+
Sbjct: 71 DFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP---KTLQELR 127
Query: 300 LQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLD 359
+ N I + +FN L Q+IV++L N L + F G+ +L
Sbjct: 128 VHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKL-------------- 173
Query: 360 SSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSV 419
+ + + I +I + SL+ LH + NK+ ++++ SL L L+
Sbjct: 174 ----------SYIRIADTNITTIPQGLPPSLTELH---LDGNKITKVDAASLKGLNNLAK 220
Query: 420 LSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINN 479
L L N + ++ +L N+ L++ HLN NKL ++P L + ++ + L +N I+ I +
Sbjct: 221 LGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGS 280
Query: 480 ------LSLNSLHQLAGLRLTENNI--SNISKGVFEKLSVLTILNLASNK 521
+G+ L N + I F + V + L + K
Sbjct: 281 NDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330
Score = 190 bits (485), Expect = 9e-54
Identities = 66/323 (20%), Positives = 123/323 (38%), Gaps = 56/323 (17%)
Query: 113 DLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHNVFTDELQSLESL 172
D L ++ KI + G F+ L+ +L +L
Sbjct: 53 DTALLDLQNNKITEIKDGDFKNLK-------------------------------NLHTL 81
Query: 173 DLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNS 232
L N I + F PL L L L++N+L + L+ L + N
Sbjct: 82 ILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPK---------TLQELRVHENE 132
Query: 233 FDSLPAEGFSRLSRLQELYLQGNILT--FLADHALDGLNSLTVLNLSVNNLVNIPPELFN 290
+ F+ L+++ + L N L + + A G+ L+ + ++ N+ IP L
Sbjct: 133 ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP- 191
Query: 291 QSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNI 350
L E++L N I + L L L LS N ++ V+ + + L L++
Sbjct: 192 --PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA--VDNGSLANTPHLRELHL 247
Query: 351 AYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFA------SLSNLHTLIMSNNKLK 404
NK+ K+ D +QV++L NN I +I N F ++ + + +N ++
Sbjct: 248 NNNKLVKVPGG-LADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 306
Query: 405 --RIESNSLDSLTALSVLSLDNN 425
I+ ++ + + + L N
Sbjct: 307 YWEIQPSTFRCVYVRAAVQLGNY 329
Score = 187 bits (477), Expect = 9e-53
Identities = 77/371 (20%), Positives = 133/371 (35%), Gaps = 75/371 (20%)
Query: 294 DLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYN 353
L+ V + + + + +LDL NN++TE + F L L L + N
Sbjct: 32 HLRVVQCSDLGLEKVPKDLPPDTA---LLDLQNNKITE--IKDGDFKNLKNLHTLILINN 86
Query: 354 KMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDS 413
K++K+ F L +L+ L+L NQ++ + +L L + N++ ++ + +
Sbjct: 87 KISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELR---VHENEITKVRKSVFNG 143
Query: 414 LTALSVLSLDNNELE--YIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGD 471
L + V+ L N L+ IE A + L + +T IP+ L SL L L
Sbjct: 144 LNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL--PPSLTELHLDG 201
Query: 472 NLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFD 531
N IT+++ SL L+ LA L L+ N+IS + G L L+L +NK+ KV G
Sbjct: 202 NKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGG-LA 260
Query: 532 NNSNLVAIRLDGNYLTDIG-GLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQ 590
++ + + L N ++ IG F + + N
Sbjct: 261 DHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKA----------------SYSGVSLFSNP 304
Query: 591 ISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKP 650
+ ++QP TF
Sbjct: 305 VQ---------------------------------------------YWEIQPSTFRCVY 319
Query: 651 NLTRVDLVGNR 661
V L +
Sbjct: 320 VRAAVQLGNYK 330
Score = 172 bits (437), Expect = 2e-47
Identities = 78/303 (25%), Positives = 132/303 (43%), Gaps = 52/303 (17%)
Query: 369 LQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELE 428
+L L+NN+I I F +L NLHTLI+ NNK+ +I + L L L L N+L+
Sbjct: 54 TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 113
Query: 429 YIEENALKNSTSLQDFHLNGNKLTEIPK-VLRNLHSLKTLDLGDNLITE--INNLSLNSL 485
+ E K LQ+ ++ N++T++ K V L+ + ++LG N + I N + +
Sbjct: 114 ELPEKMPKT---LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM 170
Query: 486 HQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNY 545
+L+ +R+ + NI+ I +G+ L T L+L NKI KV+A + +NL + L N
Sbjct: 171 KKLSYIRIADTNITTIPQGLPPSL---TELHLDGNKITKVDAASLKGLNNLAKLGLSFNS 227
Query: 546 LTDI-GGLFPKLPNLVWLNISENLLEWFDYALIP-ADLQWLDIHGNQISELGNYFEIESQ 603
++ + G P+L L+++ N L L +Q + +H N IS +G+
Sbjct: 228 ISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGS------- 280
Query: 604 LRLTYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLK 663
N F P K + + V L N ++
Sbjct: 281 --------------------------NDFC--------PPGYNTKKASYSGVSLFSNPVQ 306
Query: 664 NIN 666
Sbjct: 307 YWE 309
Score = 171 bits (436), Expect = 2e-47
Identities = 64/307 (20%), Positives = 120/307 (39%), Gaps = 46/307 (14%)
Query: 101 SSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSL-DISH 159
+ + G F+ L +L L + KI +S G+F L KL+ L L N L ++
Sbjct: 65 TEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS-KN------QLKELPE 117
Query: 160 NVFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVA--TFSFSNYDTA 217
+ +L+ L + N I + ++F L + + L N L + +F
Sbjct: 118 KMPK----TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM--- 170
Query: 218 RCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLS 277
L + +++ + ++P L EL+L GN +T + +L GLN+L L LS
Sbjct: 171 ---KKLSYIRIADTNITTIPQGLP---PSLTELHLDGNKITKVDAASLKGLNNLAKLGLS 224
Query: 278 VNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAA 337
N++ + + L+E++L NN + + PG + V+ L NN ++ + +
Sbjct: 225 FNSISAVDNGSLANTPHLRELHLNNNKLVKV-PGGLADHKYIQVVYLHNNNISA--IGSN 281
Query: 338 TFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIE--SIHRNTFASLSNLHT 395
F + L +N ++ I +TF +
Sbjct: 282 DFCPP------------------GYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAA 323
Query: 396 LIMSNNK 402
+ + N K
Sbjct: 324 VQLGNYK 330
Score = 123 bits (311), Expect = 8e-31
Identities = 54/233 (23%), Positives = 91/233 (39%), Gaps = 28/233 (12%)
Query: 440 SLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNIS 499
L+ + L ++PK L LDL +N ITEI + +L L L L N IS
Sbjct: 32 HLRVVQCSDLGLEKVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS 89
Query: 500 NISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDI-GGLFPKLPN 558
IS G F L L L L+ N+++++ L +R+ N +T + +F L
Sbjct: 90 KISPGAFAPLVKLERLYLSKNQLKELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQ 146
Query: 559 LVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTE 618
++ + + N L+ I + L+Y + +T
Sbjct: 147 MIVVELGTN------------PLKSSGIENGAFQGMKK---------LSYIRIADTNITT 185
Query: 619 LTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALR 671
+ P S+ L L N I+KV + NL ++ L N + ++ +L
Sbjct: 186 IPQGL-PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA 237
Score = 119 bits (300), Expect = 3e-29
Identities = 41/152 (26%), Positives = 62/152 (40%), Gaps = 16/152 (10%)
Query: 768 TCPNNCTCYHDVSWEANVIDCSTGGYDNQL---PPRIPMDATELYLDGNRIPVVGSHSFI 824
CP C C+ V+ CS D L P +P D L L N+I + F
Sbjct: 24 VCPFRCQCH------LRVVQCS----DLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFK 73
Query: 825 GRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQY 884
K L L L ++ + I F L +L L L N+L E+ + L+EL +
Sbjct: 74 NLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP---KTLQELRVHE 130
Query: 885 NKIIYISNRTFLSLTHLKVLQLDHNRITSFAV 916
N+I + F L + V++L N + S +
Sbjct: 131 NEITKVRKSVFNGLNQMIVVELGTNPLKSSGI 162
Score = 93.9 bits (234), Expect = 1e-20
Identities = 34/131 (25%), Positives = 61/131 (46%), Gaps = 8/131 (6%)
Query: 806 TELYLDGNRIPVVG--SHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRL 863
+ L N + G + +F G KKL + + +++ TI L EL LD N++
Sbjct: 148 IVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTEL---HLDGNKI 204
Query: 864 TEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSF--AVWHLSS 921
T++ + L NL +L L +N I + N + + HL+ L L++N++ +
Sbjct: 205 TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKY 264
Query: 922 QIQSITLTSNP 932
IQ + L +N
Sbjct: 265 -IQVVYLHNNN 274
Score = 93.1 bits (232), Expect = 2e-20
Identities = 32/133 (24%), Positives = 56/133 (42%), Gaps = 10/133 (7%)
Query: 793 YDNQL---PPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNG 849
D + P +P TEL+LDGN+I V + S G L L L+ + + + N +
Sbjct: 179 ADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN 238
Query: 850 LKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFL------SLTHLKV 903
L L L++N+L ++ G + ++ +YL N I I + F
Sbjct: 239 TPHLRELHLNNNKLVKVPG-GLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSG 297
Query: 904 LQLDHNRITSFAV 916
+ L N + + +
Sbjct: 298 VSLFSNPVQYWEI 310
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A
{Anopheles gambiae}
Length = 390
Score = 246 bits (630), Expect = 1e-72
Identities = 73/407 (17%), Positives = 146/407 (35%), Gaps = 42/407 (10%)
Query: 186 IFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLS 245
C +L Y + + ++ T N +++ N++ LPA
Sbjct: 10 YKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFR 69
Query: 246 RLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSI 305
+++ L L + + +A +++ L + N + +PP +F L + L+ N +
Sbjct: 70 QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL 129
Query: 306 NVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKD 365
+ L GIF+ +L L +SNN L +++ F+
Sbjct: 130 SSLPRGIFHNTPKLTTLSMSNNNLE--------------------------RIEDDTFQA 163
Query: 366 LYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNN 425
LQ L L +N++ + + + +L +S N L +L A+ L +N
Sbjct: 164 TTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHN 215
Query: 426 ELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSL 485
+ + L L N LT+ L N L +DL N + +I +
Sbjct: 216 SINVVRGPVNVE---LTILKLQHNNLTDTA-WLLNYPGLVEVDLSYNELEKIMYHPFVKM 271
Query: 486 HQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNY 545
+L L ++ N + ++ + + L +L+L+ N + VE L + LD N
Sbjct: 272 QRLERLYISNNRLVALN-LYGQPIPTLKVLDLSHNHLLHVERNQP-QFDRLENLYLDHNS 329
Query: 546 LTDIGGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQIS 592
+ + L L +S N + + ++ +
Sbjct: 330 IVTLK--LSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQH 374
Score = 232 bits (594), Expect = 1e-67
Identities = 72/368 (19%), Positives = 150/368 (40%), Gaps = 26/368 (7%)
Query: 151 STMSLDISHNVFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFS 210
+ D+ L + + + +++ LP A+ + + LNL ++ + T++
Sbjct: 29 DMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYA 88
Query: 211 FSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNS 270
F+ ++ L + N+ LP F + L L L+ N L+ L
Sbjct: 89 FAYAH------TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPK 142
Query: 271 LTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELT 330
LT L++S NNL I + F + L+ + L +N + + + L ++S N L+
Sbjct: 143 LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLI---PSLFHANVSYNLLS 199
Query: 331 EEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASL 390
T + + L+ ++N +N + + + L +L L++N + +
Sbjct: 200 -------TLAIPIAVEELDASHNSINVVRGPVNVE---LTILKLQHNNLTDTA--WLLNY 247
Query: 391 SNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNK 450
L + +S N+L++I + + L L + NN L + + +L+ L+ N
Sbjct: 248 PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNL-YGQPIPTLKVLDLSHNH 306
Query: 451 LTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNIS-KGVFEKL 509
L + + L+ L L N I + L++ H L L L+ N+ S + +F +
Sbjct: 307 LLHVERNQPQFDRLENLYLDHNSIVTL---KLSTHHTLKNLTLSHNDWDCNSLRALFRNV 363
Query: 510 SVLTILNL 517
+ + +
Sbjct: 364 ARPAVDDA 371
Score = 224 bits (573), Expect = 7e-65
Identities = 84/394 (21%), Positives = 154/394 (39%), Gaps = 28/394 (7%)
Query: 314 NVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLH 373
N+ + D+ + T++ L+ ++ + M KL +++ ++++L+
Sbjct: 16 NLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLN 75
Query: 374 LENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEEN 433
L + QIE I FA + L M N ++ + + ++ L+VL L+ N+L +
Sbjct: 76 LNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRG 135
Query: 434 ALKNSTSLQDFHLNGNKLTEIPK-VLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLR 492
N+ L ++ N L I + SL+ L L N +T + L+ + L
Sbjct: 136 IFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHAN 192
Query: 493 LTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGL 552
++ N +S ++ + + L+ + N I V L ++L N LTD
Sbjct: 193 VSYNLLSTLAIPIA-----VEELDASHNSINVVRGPVN---VELTILKLQHNNLTDTAW- 243
Query: 553 FPKLPNLVWLNISENLLEWFDYALIP--ADLQWLDIHGNQISELGNYFEIESQLRLTYFD 610
P LV +++S N LE Y L+ L I N++ L Y + L D
Sbjct: 244 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYG--QPIPTLKVLD 301
Query: 611 ASSNKLTELTGNAIP-HSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTA 669
S N L + N +ENL+L +N I ++ T L + L N + A
Sbjct: 302 LSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLSTH---HTLKNLTLSHNDWDCNSLRA 358
Query: 670 LRISPLPSHKNIPDFYIGENPFQCDCNMQWLQSY 703
L +N+ + + C + Q
Sbjct: 359 LF-------RNVARPAVDDADQHCKIDYQLEHGL 385
Score = 198 bits (505), Expect = 8e-56
Identities = 79/371 (21%), Positives = 149/371 (40%), Gaps = 59/371 (15%)
Query: 101 SSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHN 160
L + ++ L++ +I + +F
Sbjct: 58 RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAH------------------------ 93
Query: 161 VFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCG 220
+++ L + N+I LP +F + L+ L L +N LS++ F N
Sbjct: 94 -------TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNT------ 140
Query: 221 INLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNN 280
L L +SNN+ + + + F + LQ L L N LT + + SL N+S N
Sbjct: 141 PKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIP---SLFHANVSYNL 197
Query: 281 LVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFS 340
L + + ++E+ +NSINV+ + +L +L L +N LT+ A
Sbjct: 198 LSTLAIPIA-----VEELDASHNSINVVRGPVN---VELTILKLQHNNLTD----TAWLL 245
Query: 341 GLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSN 400
LV ++++YN++ K+ F + RL+ L++ NN++ +++ + L L +S+
Sbjct: 246 NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNL-YGQPIPTLKVLDLSH 304
Query: 401 NKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIP--KVL 458
N L +E N L L LD+N + ++ + L++ L+ N +
Sbjct: 305 NHLLHVERN-QPQFDRLENLYLDHNSIVTLKLSTHHT---LKNLTLSHNDWDCNSLRALF 360
Query: 459 RNLHSLKTLDL 469
RN+ D
Sbjct: 361 RNVARPAVDDA 371
Score = 177 bits (452), Expect = 1e-48
Identities = 69/328 (21%), Positives = 130/328 (39%), Gaps = 37/328 (11%)
Query: 101 SSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSL-DISH 159
+ +F ++ L + F I L F+ + L L L N L +
Sbjct: 82 EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE-RN------DLSSLPR 134
Query: 160 NVFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARC 219
+F + L +L +S N++ + D F SL L L+ N+L++V
Sbjct: 135 GIFHN-TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIP------- 186
Query: 220 GINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVN 279
+L ++S N +L ++EL N + + LT+L L N
Sbjct: 187 --SLFHANVSYNLLSTLAI-----PIAVEELDASHNSINVVRGPV---NVELTILKLQHN 236
Query: 280 NLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATF 339
NL + L EV L N + + F + +L L +SNN L
Sbjct: 237 NLTDTAW--LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA---LNLYG 291
Query: 340 SGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMS 399
+ L VL++++N + ++ + + RL+ L+L++N I ++ +T +L NL +S
Sbjct: 292 QPIPTLKVLDLSHNHLLHVERNQPQ-FDRLENLYLDHNSIVTLKLSTHHTLKNLT---LS 347
Query: 400 NNKLKRIESNSLDSLTALSVLSLDNNEL 427
+N +L ++ ++D+ +
Sbjct: 348 HNDWDCNSLRAL--FRNVARPAVDDADQ 373
Score = 95.1 bits (237), Expect = 1e-20
Identities = 29/126 (23%), Positives = 57/126 (45%), Gaps = 1/126 (0%)
Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
L L+ +I + +++F +Q L++ + + + F + L +L L+ N L+
Sbjct: 72 ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS 131
Query: 866 IRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSSQIQS 925
+ F L L + N + I + TF + T L+ LQL NR+T + + S +
Sbjct: 132 LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPS-LFH 190
Query: 926 ITLTSN 931
++ N
Sbjct: 191 ANVSYN 196
Score = 91.3 bits (227), Expect = 2e-19
Identities = 17/108 (15%), Positives = 42/108 (38%)
Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
+ + + + + +++++L LN +E I F + L + N +
Sbjct: 48 KIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY 107
Query: 866 IRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITS 913
+ + F+ + L L L+ N + + F + L L + +N +
Sbjct: 108 LPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER 155
Score = 82.0 bits (203), Expect = 2e-16
Identities = 28/134 (20%), Positives = 57/134 (42%), Gaps = 5/134 (3%)
Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
E+ L N + + H F+ ++L+ L+++++ + + N + L +L L N L
Sbjct: 251 VEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLLH 309
Query: 866 IRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSSQIQS 925
+ + + L LYL +N I+ + T +L +L L HN ++ L +
Sbjct: 310 VER-NQPQFDRLENLYLDHNSIVTLKLSTHHTLKNL---TLSHNDWDCNSLRALFRNVAR 365
Query: 926 ITLTSNPWSCDCDF 939
+ C D+
Sbjct: 366 PAVDDADQHCKIDY 379
Score = 76.6 bits (189), Expect = 1e-14
Identities = 35/142 (24%), Positives = 55/142 (38%), Gaps = 19/142 (13%)
Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
T L L+ N + + F KL L ++++++E I + TF L L+L NRLT
Sbjct: 120 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH 179
Query: 866 IRGYEFERLE----------------NLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHN 909
+ L + EL +N I + + LT LK L HN
Sbjct: 180 VDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILK---LQHN 236
Query: 910 RITSFAVWHLSSQIQSITLTSN 931
+T A + + L+ N
Sbjct: 237 NLTDTAWLLNYPGLVEVDLSYN 258
Score = 72.8 bits (179), Expect = 2e-13
Identities = 21/137 (15%), Positives = 48/137 (35%), Gaps = 11/137 (8%)
Query: 796 QLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELII 855
+ + + N + + ++ L + + + + L L
Sbjct: 179 HVDLSLIPSLFHANVSYNLL-----STLAIPIAVEELDASHNSINVVRGPVNVELTIL-- 231
Query: 856 LRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSF- 914
+L N LT+ L E+ L YN++ I F+ + L+ L + +NR+ +
Sbjct: 232 -KLQHNNLTDTAW--LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALN 288
Query: 915 AVWHLSSQIQSITLTSN 931
++ + L+ N
Sbjct: 289 LYGQPIPTLKVLDLSHN 305
Score = 31.6 bits (72), Expect = 1.9
Identities = 5/57 (8%), Positives = 20/57 (35%), Gaps = 2/57 (3%)
Query: 877 LRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLS--SQIQSITLTSN 931
++++ ++L + K++ ++ + L Q++ + L
Sbjct: 23 FYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL 79
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein,
signaling; HET: NAG FLC; 3.40A {Bos taurus}
Length = 332
Score = 243 bits (623), Expect = 3e-72
Identities = 86/371 (23%), Positives = 144/371 (38%), Gaps = 53/371 (14%)
Query: 164 DELQSLESLDLSMNSIWTLPDAIF--CPLQ---SLSYLNLTQNKLSNVATFSFSNYDTAR 218
DE S + + +LP CP L + + L V +
Sbjct: 1 DEEASGAETTSGIPDLDSLPPTYSAMCPFGCHCHLRVVQCSDLGLKAVPKEISPD----- 55
Query: 219 CGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSV 278
+LDL NN L + F L L L L N ++ + + A L L L +S
Sbjct: 56 ----TTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111
Query: 279 NNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAAT 338
N+LV IPP L L E+ + +N I + G+F+ L + +++ N L
Sbjct: 112 NHLVEIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGA 168
Query: 339 FSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIM 398
F GL +L L I+ K+ + + + L LHL++N+I++I S L+ L +
Sbjct: 169 FDGL-KLNYLRISEAKLTGIPKDLPE---TLNELHLDHNKIQAIELEDLLRYSKLYRLGL 224
Query: 399 SNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVL 458
+N+++ IE+ SL L L L HL+ NKL+ +P L
Sbjct: 225 GHNQIRMIENGSLSFLPTLREL------------------------HLDNNKLSRVPAGL 260
Query: 459 RNLHSLKTLDLGDNLITEINNLSLNSLH------QLAGLRLTENNIS--NISKGVFEKLS 510
+L L+ + L N IT++ + G+ L N + + F ++
Sbjct: 261 PDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVT 320
Query: 511 VLTILNLASNK 521
+ + K
Sbjct: 321 DRLAIQFGNYK 331
Score = 182 bits (464), Expect = 5e-51
Identities = 70/323 (21%), Positives = 123/323 (38%), Gaps = 57/323 (17%)
Query: 113 DLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHNVFTDELQSLESL 172
D L ++ I L F+GL+ L +L
Sbjct: 55 DTTLLDLQNNDISELRKDDFKGLQ-------------------------------HLYAL 83
Query: 173 DLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNS 232
L N I + + F PL+ L L +++N L + S +L L + +N
Sbjct: 84 VLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPS---------SLVELRIHDNR 134
Query: 233 FDSLPAEGFSRLSRLQELYLQGNILT--FLADHALDGLNSLTVLNLSVNNLVNIPPELFN 290
+P FS L + + + GN L A DGL L L +S L IP +L
Sbjct: 135 IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLK-LNYLRISEAKLTGIPKDLP- 192
Query: 291 QSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNI 350
L E++L +N I + ++L L L +N++ + + S L L L++
Sbjct: 193 --ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRM--IENGSLSFLPTLRELHL 248
Query: 351 AYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASL------SNLHTLIMSNNKLK 404
NK++++ + DL LQV++L N I + N F + + + + + NN +
Sbjct: 249 DNNKLSRVPAG-LPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307
Query: 405 --RIESNSLDSLTALSVLSLDNN 425
++ + +T + N
Sbjct: 308 YWEVQPATFRCVTDRLAIQFGNY 330
Score = 178 bits (454), Expect = 1e-49
Identities = 72/332 (21%), Positives = 116/332 (34%), Gaps = 52/332 (15%)
Query: 277 SVNNLVNIPPELFNQ-----SRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTE 331
+ +L ++PP L+ V + + + I T L DL NN+++E
Sbjct: 12 GIPDLDSLPPTYSAMCPFGCHCHLRVVQCSDLGLKAVPKEISPDTTLL---DLQNNDISE 68
Query: 332 EWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLS 391
L FK L L L L NN+I IH F+ L
Sbjct: 69 --------------------------LRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLR 102
Query: 392 NLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKL 451
L L +S N L I N SL L + +N + + + ++ + GN L
Sbjct: 103 KLQKLYISKNHLVEIPPNLPSSLV---ELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPL 159
Query: 452 TEI---PKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEK 508
P L L L + + +T I +L++L L N I I +
Sbjct: 160 ENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLPETLNEL---HLDHNKIQAIELEDLLR 215
Query: 509 LSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENL 568
S L L L N+I+ +E G+ L + LD N L+ + P L L + + N
Sbjct: 216 YSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNN 275
Query: 569 LEWFD--------YALIPADLQWLDIHGNQIS 592
+ + + A + + N +
Sbjct: 276 ITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307
Score = 170 bits (433), Expect = 8e-47
Identities = 66/312 (21%), Positives = 111/312 (35%), Gaps = 57/312 (18%)
Query: 101 SSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHN 160
S L F+ L L L + KI + +F LRKL+ L + S N
Sbjct: 67 SELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI--------------SKN 112
Query: 161 VFT----DELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVA----TFSFS 212
+ SL L + N I +P +F L++++ + + N L N F
Sbjct: 113 HLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFD-- 170
Query: 213 NYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLT 272
G+ L L +S +P + L EL+L N + + L + L
Sbjct: 171 -------GLKLNYLRISEAKLTGIPKDLP---ETLNELHLDHNKIQAIELEDLLRYSKLY 220
Query: 273 VLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEE 332
L L N + I + L+E++L NN ++ + G+ + L L V+ L N +T+
Sbjct: 221 RLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPD-LKLLQVVYLHTNNITK- 278
Query: 333 WVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIE--SIHRNTFASL 390
V F + V + L NN + + TF +
Sbjct: 279 -VGVNDFCPVGFGVKRA------------------YYNGISLFNNPVPYWEVQPATFRCV 319
Query: 391 SNLHTLIMSNNK 402
++ + N K
Sbjct: 320 TDRLAIQFGNYK 331
Score = 147 bits (374), Expect = 4e-39
Identities = 62/347 (17%), Positives = 117/347 (33%), Gaps = 90/347 (25%)
Query: 369 LQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELE 428
+L L+NN I + ++ F L +L+ L++ NNK+ +I + L L L + N L
Sbjct: 56 TTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV 115
Query: 429 YIEENALKNSTSLQDFHLNGNKLTEIPK-VLRNLHSLKTLDLGDNLITE--INNLSLNSL 485
I N + L + ++ N++ ++PK V L ++ +++G N + + + L
Sbjct: 116 EIPPNLPSS---LVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL 172
Query: 486 HQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNY 545
+L LR++E ++ I K + E L L+L NKIQ +E S L + L N
Sbjct: 173 -KLNYLRISEAKLTGIPKDLPETL---NELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQ 228
Query: 546 LTDIGGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLR 605
+ + N + L+ L + N++S +
Sbjct: 229 IRM-------IENGSLSFLPT--------------LRELHLDNNKLSRV----------- 256
Query: 606 LTYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNI 665
P L V L N + +
Sbjct: 257 -------------------------------------PAGLPDLKLLQVVYLHTNNITKV 279
Query: 666 NQTALRISPLP-----------SHKNIPDFYIGENPFQCDCNMQWLQ 701
+ +P + + F+C + +Q
Sbjct: 280 GVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQ 326
Score = 127 bits (320), Expect = 7e-32
Identities = 53/233 (22%), Positives = 90/233 (38%), Gaps = 29/233 (12%)
Query: 440 SLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNIS 499
L+ + L +PK + LDL +N I+E+ L L L L N IS
Sbjct: 34 HLRVVQCSDLGLKAVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS 91
Query: 500 NISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDI-GGLFPKLPN 558
I + F L L L ++ N + ++ S+LV +R+ N + + G+F L N
Sbjct: 92 KIHEKAFSPLRKLQKLYISKNHLVEIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRN 148
Query: 559 LVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTE 618
+ +++ GN + G L+L Y S KLT
Sbjct: 149 M----------------------NCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG 186
Query: 619 LTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALR 671
+ + P ++ L L +N I ++ L R+ L N+++ I +L
Sbjct: 187 IPKDL-PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLS 238
Score = 115 bits (291), Expect = 5e-28
Identities = 41/152 (26%), Positives = 63/152 (41%), Gaps = 16/152 (10%)
Query: 768 TCPNNCTCYHDVSWEANVIDCSTGGYDNQL---PPRIPMDATELYLDGNRIPVVGSHSFI 824
CP C C+ V+ CS D L P I D T L L N I + F
Sbjct: 26 MCPFGCHCH------LRVVQCS----DLGLKAVPKEISPDTTLLDLQNNDISELRKDDFK 75
Query: 825 GRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQY 884
G + L L L ++ + IH K F+ L++L L + N L EI +L EL +
Sbjct: 76 GLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP---SSLVELRIHD 132
Query: 885 NKIIYISNRTFLSLTHLKVLQLDHNRITSFAV 916
N+I + F L ++ +++ N + +
Sbjct: 133 NRIRKVPKGVFSGLRNMNCIEMGGNPLENSGF 164
Score = 94.3 bits (235), Expect = 7e-21
Identities = 31/127 (24%), Positives = 55/127 (43%), Gaps = 7/127 (5%)
Query: 796 QLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELII 855
+P +P EL+LD N+I + + KL L L + + I N + + L L
Sbjct: 186 GIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRE 245
Query: 856 LRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTF------LSLTHLKVLQLDHN 909
L LD+N+L+ + L+ L+ +YL N I + F + + + L +N
Sbjct: 246 LHLDNNKLSRVPAG-LPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNN 304
Query: 910 RITSFAV 916
+ + V
Sbjct: 305 PVPYWEV 311
Score = 93.5 bits (233), Expect = 1e-20
Identities = 42/167 (25%), Positives = 64/167 (38%), Gaps = 28/167 (16%)
Query: 793 YDNQL---PPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFL--NSSHVETIHNKTF 847
N L PP +P EL + NRI V F G + + + + N F
Sbjct: 110 SKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAF 169
Query: 848 NGLK--------------------ELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKI 887
+GLK L L LD N++ I + R L L L +N+I
Sbjct: 170 DGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQI 229
Query: 888 IYISNRTFLSLTHLKVLQLDHNRITSF--AVWHLSSQIQSITLTSNP 932
I N + L L+ L LD+N+++ + L +Q + L +N
Sbjct: 230 RMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKL-LQVVYLHTNN 275
Score = 37.7 bits (88), Expect = 0.018
Identities = 12/65 (18%), Positives = 23/65 (35%), Gaps = 8/65 (12%)
Query: 806 TELYLDGNRIPVVGSHSFIG------RKKLQILFL--NSSHVETIHNKTFNGLKELIILR 857
+YL N I VG + F R + L N + TF + + + ++
Sbjct: 267 QVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQ 326
Query: 858 LDDNR 862
+ +
Sbjct: 327 FGNYK 331
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain,
protein binding, extra protein, structural genomics;
2.80A {Bacteroides thetaiotaomicron}
Length = 876
Score = 253 bits (647), Expect = 3e-70
Identities = 80/484 (16%), Positives = 161/484 (33%), Gaps = 41/484 (8%)
Query: 70 NSEIENTNFSIIQAQYTVRLRIECGDMLFFQSSLSPGSFQTLIDLKDLSVEFCKIGNLSA 129
++ N I+ + L+ L + + + Q L L+ + +
Sbjct: 406 DAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNI 465
Query: 130 GSFRGLRKLKTLTLRTHNTDWSTMSLDISHNVFTDELQSLESLDLSMNSIWTLPDAIFCP 189
+ + L S+ L+ L ++L T
Sbjct: 466 AVD------WEDANSDYAKQYENEELSWSN------LKDLTDVELYNCPNMTQLPDFLYD 513
Query: 190 LQSLSYLNLTQNKLSNVATFSFSNY---DTARCGINLRVLDLSNNSFDSLPAE-GFSRLS 245
L L LN+ N+ + A D G +++ + N+ + PA ++
Sbjct: 514 LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMV 573
Query: 246 RLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSI 305
+L L N + L A LT L L N + IP + + ++ + +N +
Sbjct: 574 KLGLLDCVHNKVRHL--EAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKL 631
Query: 306 NVLAPGIFNV-LTQLIVLDLSNNELTEEWVNAATFSG---LHRLVVLNIAYNKMNKLDSS 361
+ + + +D S N++ E N + + ++YN++ K +
Sbjct: 632 KYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTE 691
Query: 362 IFKDLYRLQVLHLENNQIESIHRN-------TFASLSNLHTLIMSNNKLKRI-ESNSLDS 413
+F + + L NN + SI N + + L T+ + NKL + + +
Sbjct: 692 LFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATT 751
Query: 414 LTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNK-------LTEIPKVLRNLHSLKT 466
L LS + + N NS+ L+ F + + L + P + SL
Sbjct: 752 LPYLSNMDVSYNCFSSFPTQ-PLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQ 810
Query: 467 LDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVE 526
L +G N I +++ L+ L + +N +I + L +K Q +
Sbjct: 811 LQIGSNDIRKVDEKLTPQLYI---LDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIR 867
Query: 527 AGTF 530
Sbjct: 868 GCDA 871
Score = 246 bits (630), Expect = 4e-68
Identities = 99/622 (15%), Positives = 192/622 (30%), Gaps = 103/622 (16%)
Query: 101 SSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHN 160
P + L +LK LS R H
Sbjct: 336 KGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRI------RMHYKK 389
Query: 161 VFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCG 220
+F D Q L DL ++I P+ P++ S ++L ++ N
Sbjct: 390 MFLDYDQRLNLSDLLQDAINRNPEMK--PIKKDSRISLKDTQIGN--------------- 432
Query: 221 INLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNN 280
N + RL++LQ +Y + T+ N
Sbjct: 433 --------LTNRITFISKA-IQRLTKLQIIYFANSPFTYDNIAV-----DWEDANSDYAK 478
Query: 281 LVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFS 340
++ +DL +V L N P L +L L+++ N
Sbjct: 479 QYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACN------------- 525
Query: 341 GLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESI-HRNTFASLSNLHTLIMS 399
R + +L ++Q+ ++ N +E + + L L
Sbjct: 526 ---RGISAAQLKADWTRLADDEDT-GPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCV 581
Query: 400 NNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKV-- 457
+NK++ +E + + L+ L LD N++E I E+ + ++ + NKL IP +
Sbjct: 582 HNKVRHLE--AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFN 639
Query: 458 LRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTE-----NNISNISKGVFEKLSVL 512
++++ + ++D N I S+ G+ + N I +F S +
Sbjct: 640 AKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPI 699
Query: 513 TILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWF 572
+ + L++N + + N L G + L +++ N L
Sbjct: 700 STIILSNNLMTSIPE----------------NSLKPKDGNYKNTYLLTTIDLRFNKLTSL 743
Query: 573 DYALIPAD---LQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGN----AIP 625
L +D+ N S + + +L F + GN P
Sbjct: 744 SDDFRATTLPYLSNMDVSYNCFSSFPT--QPLNSSQLKAFGIRHQRD--AEGNRILRQWP 799
Query: 626 HSVEN------LFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHK 679
+ L + +N I KV P L +D+ N +I+ T++
Sbjct: 800 TGITTCPSLIQLQIGSNDIRKVDEKLT---PQLYILDIADNPNISIDVTSV---CPYIEA 853
Query: 680 NIPDFYIGENPFQCDCNMQWLQ 701
+ + C+ ++
Sbjct: 854 GMYVLLYDKTQDIRGCDALGIE 875
Score = 188 bits (478), Expect = 5e-49
Identities = 78/579 (13%), Positives = 180/579 (31%), Gaps = 58/579 (10%)
Query: 123 KIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHNVFTDELQSLESLDLSMNSIWTL 182
G ++ + S + N T + L + I
Sbjct: 212 PAGTYQVVAYTTYSQSGIKRSELETQSVRGESFTVIDNKLTKDANVPIQLKETAEYI-KD 270
Query: 183 PDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFS 242
A+ ++L N + T N++ + + + P
Sbjct: 271 YKALKAIWEALDGKNWRYYSGTINNTIHSLNWNF----------NKELDMWGDQPGVDLD 320
Query: 243 RLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQN 302
R+ L L G A+ L L VL+ ++ ++ +
Sbjct: 321 NNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERK 380
Query: 303 NSINVLAPGIF-NVLTQLIVLDLSNNELTE--EWVNAATFSGLH-RLVVLNIAYNKMNKL 358
+ I + +F + +L + DL + + E S + + + N++ +
Sbjct: 381 HRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFI 440
Query: 359 DSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALS 418
+I + L +LQ+++ N+ + +N K E S +L L+
Sbjct: 441 SKAIQR-LTKLQIIYFANSPFTYDNIAVDWEDANS-----DYAKQYENEELSWSNLKDLT 494
Query: 419 VLSL-DNNELEYIEENALKNSTSLQDFHLNGNKLTEI----------PKVLRNLHSLKTL 467
+ L + + + + L + LQ ++ N+ ++
Sbjct: 495 DVELYNCPNMTQLPD-FLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIF 553
Query: 468 DLGDNLITEI-NNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVE 526
+G N + E + SL + +L L N + ++ F LT L L N+I+++
Sbjct: 554 YMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE--AFGTNVKLTDLKLDYNQIEEIP 611
Query: 527 AGTFDNNSNLVAIRLDGNYLTDI--GGLFPKLPNLVWLNISENLLE-------WFDYALI 577
+ + N L I + + ++ S N +
Sbjct: 612 EDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYK 671
Query: 578 PADLQWLDIHGNQISELGNYFEIESQL-RLTYFDASSNKLTELTGNAIP---------HS 627
+ + + N+I + E+ + ++ S+N +T + N++ +
Sbjct: 672 GINASTVTLSYNEIQKFPT--ELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYL 729
Query: 628 VENLFLTNNLISKVQPYTFFMK-PNLTRVDLVGNRLKNI 665
+ + L N ++ + P L+ +D+ N +
Sbjct: 730 LTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSF 768
Score = 69.9 bits (171), Expect = 4e-12
Identities = 21/119 (17%), Positives = 42/119 (35%), Gaps = 12/119 (10%)
Query: 806 TELYLDGNRIPVVGS---------HSFIGRKKLQILFLNSSHVETI-HNKTFNGLKELII 855
L + NR K+QI ++ +++E + + + +L +
Sbjct: 518 QSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGL 577
Query: 856 LRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSF 914
L N++ + F L +L L YN+I I ++ L HN++
Sbjct: 578 LDCVHNKVRHLE--AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYI 634
Score = 68.0 bits (166), Expect = 2e-11
Identities = 21/132 (15%), Positives = 49/132 (37%), Gaps = 6/132 (4%)
Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETI-HNKTFNGLKELIILRLDDNRLT 864
T+L LD N+I + +++ L + + ++ I + + + + N++
Sbjct: 598 TDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIG 657
Query: 865 EI-----RGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHL 919
+ + N + L YN+I F + + + + L +N +TS L
Sbjct: 658 SEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSL 717
Query: 920 SSQIQSITLTSN 931
+ + T
Sbjct: 718 KPKDGNYKNTYL 729
Score = 67.6 bits (165), Expect = 2e-11
Identities = 42/367 (11%), Positives = 94/367 (25%), Gaps = 33/367 (8%)
Query: 583 WLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPH--SVENLFLTNNLISK 640
W + G F+ + + G + + V L L
Sbjct: 278 WEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKG 337
Query: 641 VQPYTFFMKPNLTRVDLVGNRLKN----INQTALRISPLPSHKNIPDFYIGENPFQCDCN 696
P L + + L K+ + + D
Sbjct: 338 RVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQR 397
Query: 697 MQWLQSYSVNKERNKPNLVDLDTVTCKLLYNRANPAILLKEAHSNQFLCEYETNCAPLCH 756
+ + P + + + L + + + + L
Sbjct: 398 LNLS-DLLQDAINRNPEMKPIKKDSRISLKD-------TQIGNLTNRITFISKAIQRLTK 449
Query: 757 CCDFDACDCEMTCPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIP 816
+ T N + D + + + + L D T++ L
Sbjct: 450 LQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLK-----DLTDVELYNCPNM 504
Query: 817 VVGSHSFIGRKKLQILFLNSSHVETIHN---------KTFNGLKELIILRLDDNRLTEI- 866
+LQ L + + + + ++ I + N L E
Sbjct: 505 TQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFP 564
Query: 867 RGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSF--AVWHLSSQIQ 924
+++ L L +NK+ ++ F + L L+LD+N+I + Q++
Sbjct: 565 ASASLQKMVKLGLLDCVHNKVRHLE--AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVE 622
Query: 925 SITLTSN 931
+ + N
Sbjct: 623 GLGFSHN 629
Score = 66.1 bits (161), Expect = 6e-11
Identities = 19/122 (15%), Positives = 47/122 (38%), Gaps = 13/122 (10%)
Query: 806 TELYLDGNRIPVVGSHSFIGR-----KKLQILFLNSSHVETIHNKTFNGLKELIILRLDD 860
+ N+I G + + L+ + ++ + F + + L +
Sbjct: 647 GSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSN 706
Query: 861 NRLTEI-------RGYEFERLENLRELYLQYNKIIYISNR-TFLSLTHLKVLQLDHNRIT 912
N +T I + ++ L + L++NK+ +S+ +L +L + + +N +
Sbjct: 707 NLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFS 766
Query: 913 SF 914
SF
Sbjct: 767 SF 768
Score = 59.1 bits (143), Expect = 9e-09
Identities = 22/146 (15%), Positives = 44/146 (30%), Gaps = 13/146 (8%)
Query: 806 TELYLDGNRIPVVGSHSFIGR-KKLQILFLNSSHVETIHNKTFN--GLKELIILR---LD 859
T + L N++ + L + ++ + + + N LK I +
Sbjct: 731 TTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAE 790
Query: 860 DNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHL 919
NR+ +L +L + N I + + L +L + N S V +
Sbjct: 791 GNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKL---TPQLYILDIADNPNISIDVTSV 847
Query: 920 SSQIQSITLT----SNPWSCDCDFTE 941
I++ CD
Sbjct: 848 CPYIEAGMYVLLYDKTQDIRGCDALG 873
Score = 38.7 bits (90), Expect = 0.014
Identities = 24/141 (17%), Positives = 40/141 (28%), Gaps = 8/141 (5%)
Query: 859 DDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWH 918
+ + + G + + + L L LT LKVL + T
Sbjct: 307 ELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLF 366
Query: 919 LSSQIQSITLTSNPWSCDCDFTEKFRDYLQRSRSSVHDISQIRCMTGSEVGFTIMRTVIP 978
++ + + F DY QR S D+ Q E+ I
Sbjct: 367 GDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLS--DLLQDAINRNPEMKP------IK 418
Query: 979 SCNVVSTNVSSHSNNNNNTTT 999
+ +S + N N T
Sbjct: 419 KDSRISLKDTQIGNLTNRITF 439
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil,
helix-loop-helix, leucine-rich repeat, protein; HET: NAG
MAN; 2.70A {Anopheles gambiae}
Length = 597
Score = 240 bits (614), Expect = 4e-68
Identities = 72/424 (16%), Positives = 145/424 (34%), Gaps = 43/424 (10%)
Query: 174 LSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSF 233
N P+ + + ++ N +++ N++
Sbjct: 5 QRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLN-NQKIVTFKNSTM 63
Query: 234 DSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSR 293
LPA +++ L L + + +A +++ L + N + +PP +F
Sbjct: 64 RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP 123
Query: 294 DLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYN 353
L + L+ N ++ L GIF+ +L L +SNN L
Sbjct: 124 LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE----------------------- 160
Query: 354 KMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDS 413
+++ F+ LQ L L +N++ + + +L +S N L +L
Sbjct: 161 ---RIEDDTFQATTSLQNLQLSSNRLTHVDLSLI---PSLFHANVSYNLLS-----TLAI 209
Query: 414 LTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNL 473
A+ L +N + + L L N LT+ L N L +DL N
Sbjct: 210 PIAVEELDASHNSINVVRGPVNVE---LTILKLQHNNLTDTA-WLLNYPGLVEVDLSYNE 265
Query: 474 ITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNN 533
+ +I + +L L ++ N + ++ + + L +L+L+ N + VE
Sbjct: 266 LEKIMYHPFVKMQRLERLYISNNRLVALN-LYGQPIPTLKVLDLSHNHLLHVERNQP-QF 323
Query: 534 SNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISE 593
L + LD N + + L L +S N + + ++ +
Sbjct: 324 DRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHC 381
Query: 594 LGNY 597
+Y
Sbjct: 382 KIDY 385
Score = 229 bits (584), Expect = 3e-64
Identities = 74/381 (19%), Positives = 142/381 (37%), Gaps = 49/381 (12%)
Query: 143 LRTHNTDWSTMSLDISHNVFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNK 202
++ + D+ L + + + +++ LP A+ +
Sbjct: 27 CVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFR----------- 75
Query: 203 LSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLAD 262
+ +L+L++ + + F+ +Q+LY+ N + +L
Sbjct: 76 -------------------QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPP 116
Query: 263 HALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVL 322
H + LTVL L N+L ++P +F+ + L + + NN++ + F T L L
Sbjct: 117 HVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNL 176
Query: 323 DLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESI 382
LS+N LT S + L N++YN ++ L ++ L +N I +
Sbjct: 177 QLSSNRLTH-----VDLSLIPSLFHANVSYNLLSTLA-----IPIAVEELDASHNSINVV 226
Query: 383 HRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQ 442
L L + +N L L + L + L NELE I + L+
Sbjct: 227 RGPVN---VELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLE 281
Query: 443 DFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNIS 502
+++ N+L + + + +LK LDL N + + + +L L L N+I +
Sbjct: 282 RLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVER-NQPQFDRLENLYLDHNSIVTLK 340
Query: 503 KGVFEKLSVLTILNLASNKIQ 523
L L L+ N
Sbjct: 341 LSTHHT---LKNLTLSHNDWD 358
Score = 211 bits (539), Expect = 2e-58
Identities = 84/393 (21%), Positives = 154/393 (39%), Gaps = 28/393 (7%)
Query: 314 NVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLH 373
N+ + D+ + T++ L+ ++ + M KL +++ ++++L+
Sbjct: 22 NLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLN 81
Query: 374 LENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEEN 433
L + QIE I FA + L M N ++ + + ++ L+VL L+ N+L +
Sbjct: 82 LNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRG 141
Query: 434 ALKNSTSLQDFHLNGNKLTEIPK-VLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLR 492
N+ L ++ N L I + SL+ L L N +T + L+ + L
Sbjct: 142 IFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHAN 198
Query: 493 LTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGL 552
++ N +S ++ + + L+ + N I V L ++L N LTD
Sbjct: 199 VSYNLLSTLAIPIA-----VEELDASHNSINVVRGPVN---VELTILKLQHNNLTDTAW- 249
Query: 553 FPKLPNLVWLNISENLLEWFDYALIP--ADLQWLDIHGNQISELGNYFEIESQLRLTYFD 610
P LV +++S N LE Y L+ L I N++ L Y + L D
Sbjct: 250 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYG--QPIPTLKVLD 307
Query: 611 ASSNKLTELTGNAIP-HSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTA 669
S N L + N +ENL+L +N I ++ T L + L N + A
Sbjct: 308 LSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLSTH---HTLKNLTLSHNDWDCNSLRA 364
Query: 670 LRISPLPSHKNIPDFYIGENPFQCDCNMQWLQS 702
L +N+ + + C + Q
Sbjct: 365 L-------FRNVARPAVDDADQHCKIDYQLEHG 390
Score = 202 bits (514), Expect = 5e-55
Identities = 103/589 (17%), Positives = 202/589 (34%), Gaps = 79/589 (13%)
Query: 101 SSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHN 160
L + ++ L++ +I + +F
Sbjct: 64 RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAH------------------------ 99
Query: 161 VFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCG 220
+++ L + N+I LP +F + L+ L L +N LS++ F N
Sbjct: 100 -------TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNT------ 146
Query: 221 INLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNN 280
L L +SNN+ + + + F + LQ L L N LT + + SL N+S N
Sbjct: 147 PKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIP---SLFHANVSYNL 203
Query: 281 LVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFS 340
L + + ++E+ +NSINV+ + +L +L L +N LT+ A
Sbjct: 204 LSTLAIPIA-----VEELDASHNSINVVRGPVN---VELTILKLQHNNLTD----TAWLL 251
Query: 341 GLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSN 400
LV ++++YN++ K+ F + RL+ L++ NN++ +++ + L L +S+
Sbjct: 252 NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNL-YGQPIPTLKVLDLSH 310
Query: 401 NKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIP--KVL 458
N L +E N L L LD+N + ++ + L++ L+ N +
Sbjct: 311 NHLLHVERNQP-QFDRLENLYLDHNSIVTLKLSTHHT---LKNLTLSHNDWDCNSLRALF 366
Query: 459 RNLHSLKTLDLGDNLITEINN----LSLNSLHQLAGLRLTENNISNISKGV---FEKLSV 511
RN+ D + + S L ++++ + V + S
Sbjct: 367 RNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIALTSVVEKVQRAQGRCSA 426
Query: 512 LTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEW 571
+N + + + + N L ++ L I + L
Sbjct: 427 TDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRA------EVQQLTNEQIQQEQLLQ 480
Query: 572 FDYALIPADLQWLDIH----GNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPHS 627
+A I +L+ + L F + + + + TE
Sbjct: 481 GLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQARRTEADAKQ--KE 538
Query: 628 VENLFLTNNLISKVQPYTFFM-KPNLTRVDLVGNRLKNINQTALRISPL 675
E+L N + K L ++K + R
Sbjct: 539 TEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNRNPDT 587
Score = 94.6 bits (235), Expect = 5e-20
Identities = 29/126 (23%), Positives = 57/126 (45%), Gaps = 1/126 (0%)
Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
L L+ +I + +++F +Q L++ + + + F + L +L L+ N L+
Sbjct: 78 ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS 137
Query: 866 IRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSSQIQS 925
+ F L L + N + I + TF + T L+ LQL NR+T + + S +
Sbjct: 138 LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPS-LFH 196
Query: 926 ITLTSN 931
++ N
Sbjct: 197 ANVSYN 202
Score = 90.0 bits (223), Expect = 2e-18
Identities = 17/108 (15%), Positives = 42/108 (38%)
Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
+ + + + + +++++L LN +E I F + L + N +
Sbjct: 54 KIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY 113
Query: 866 IRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITS 913
+ + F+ + L L L+ N + + F + L L + +N +
Sbjct: 114 LPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER 161
Score = 80.0 bits (197), Expect = 2e-15
Identities = 24/108 (22%), Positives = 52/108 (48%)
Query: 807 ELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEI 866
++++D V I +I+ +S + + + +++ +L L+D ++ EI
Sbjct: 31 DVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEI 90
Query: 867 RGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSF 914
Y F +++LY+ +N I Y+ F ++ L VL L+ N ++S
Sbjct: 91 DTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSL 138
Score = 76.9 bits (189), Expect = 2e-14
Identities = 28/134 (20%), Positives = 57/134 (42%), Gaps = 5/134 (3%)
Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
E+ L N + + H F+ ++L+ L+++++ + + N + L +L L N L
Sbjct: 257 VEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLLH 315
Query: 866 IRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSSQIQS 925
+ + + L LYL +N I+ + T +L +L L HN ++ L +
Sbjct: 316 VER-NQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLT---LSHNDWDCNSLRALFRNVAR 371
Query: 926 ITLTSNPWSCDCDF 939
+ C D+
Sbjct: 372 PAVDDADQHCKIDY 385
Score = 71.9 bits (176), Expect = 7e-13
Identities = 21/137 (15%), Positives = 48/137 (35%), Gaps = 11/137 (8%)
Query: 796 QLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELII 855
+ + + N + + ++ L + + + + L L
Sbjct: 185 HVDLSLIPSLFHANVSYNLLSTLAIPIA-----VEELDASHNSINVVRGPVNVELTIL-- 237
Query: 856 LRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSF- 914
+L N LT+ L E+ L YN++ I F+ + L+ L + +NR+ +
Sbjct: 238 -KLQHNNLTDTAW--LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALN 294
Query: 915 AVWHLSSQIQSITLTSN 931
++ + L+ N
Sbjct: 295 LYGQPIPTLKVLDLSHN 311
Score = 31.1 bits (70), Expect = 3.3
Identities = 5/57 (8%), Positives = 20/57 (35%), Gaps = 2/57 (3%)
Query: 877 LRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLS--SQIQSITLTSN 931
++++ ++L + K++ ++ + L Q++ + L
Sbjct: 29 FYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL 85
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix,
leucine-rich repeat, protein; HET: NAG MAN; 2.70A
{Anopheles gambiae}
Length = 487
Score = 230 bits (588), Expect = 8e-66
Identities = 66/434 (15%), Positives = 135/434 (31%), Gaps = 51/434 (11%)
Query: 166 LQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRV 225
+ ++ +S+ ++ ++ L+L+ N LS ++ + + L +
Sbjct: 9 GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFT------KLEL 62
Query: 226 LDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIP 285
L+LS+N LS L+ L L N + L S+ L+ + NN+ +
Sbjct: 63 LNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISRVS 115
Query: 286 PELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRL 345
+ K +YL NN I +L +++ LDL NE+ A + L
Sbjct: 116 CSRG---QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN-FAELAASSDTL 171
Query: 346 VVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKR 405
LN+ YN + + + +L+ L L +N++ + F S + + + + NNKL
Sbjct: 172 EHLNLQYNFIYDVKGQVV--FAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVL 228
Query: 406 IESNSLDSLTALSVLSLDNNEL-----------------------EYIEENALKNSTSLQ 442
I +L L L N + + + T
Sbjct: 229 I-EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPT 287
Query: 443 DFHLNGNKLTEIPK------VLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTEN 496
H ++P + L + + N + + +
Sbjct: 288 LGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECEREN-QARQREIDALKE 346
Query: 497 NISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKL 556
+ V + L + + + ++ L ++ +
Sbjct: 347 QYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQ 406
Query: 557 PNLVWLNISENLLE 570
L L E
Sbjct: 407 SPLQLLRAIVKRYE 420
Score = 219 bits (560), Expect = 5e-62
Identities = 74/475 (15%), Positives = 157/475 (33%), Gaps = 37/475 (7%)
Query: 222 NLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNL 281
++ ++++S A ++EL L GN L+ ++ L L +LNLS N L
Sbjct: 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL 70
Query: 282 VNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSG 341
L+ + L NN + L + L +NN ++ V+ + G
Sbjct: 71 YETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHAANNNISR--VSCSRGQG 121
Query: 342 LHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTF-ASLSNLHTLIMSN 400
+ +A NK+ L R+Q L L+ N+I++++ AS L L +
Sbjct: 122 KKN---IYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178
Query: 401 NKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRN 460
N + ++ + L L L +N+L ++ +++ + L NKL I K LR
Sbjct: 179 NFIYDVKGQVV--FAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVLIEKALRF 235
Query: 461 LHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASN 520
+L+ DL N S + + + + ++ E+ +V T+ + +
Sbjct: 236 SQNLEHFDLRGNGFHCGTLRDFFSKN-QRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAY 294
Query: 521 KIQKVEAGTFDN-----NSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYA 575
+ + A D + G+ + ++ +
Sbjct: 295 CCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQ 354
Query: 576 L--IPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPHSVENL-- 631
+ L+ + E S R + + + + H+ E
Sbjct: 355 VTLRKQAKITLEQKKKALD------EQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSP 408
Query: 632 -----FLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHKNI 681
+ + D+ ++ + + R+ L ++
Sbjct: 409 LQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADL 463
Score = 204 bits (520), Expect = 7e-57
Identities = 71/446 (15%), Positives = 139/446 (31%), Gaps = 37/446 (8%)
Query: 241 FSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYL 300
+R + + + L ++ L+LS N L I L+ + L
Sbjct: 6 KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65
Query: 301 QNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDS 360
+N + L+ L LDL+NN + E + L+ A N ++++
Sbjct: 66 SSNVLYETLD--LESLSTLRTLDLNNNYVQE-------LLVGPSIETLHAANNNISRVSC 116
Query: 361 SIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDS-LTALSV 419
S + + ++L NN+I + S + L + N++ + L + L
Sbjct: 117 SRGQ---GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH 173
Query: 420 LSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINN 479
L+L N + ++ + L+ L+ NKL + ++ + + L +N + I
Sbjct: 174 LNLQYNFIYDVKGQVVF--AKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEK 231
Query: 480 LSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAI 539
+L L L N + F + +A ++K+ + +
Sbjct: 232 -ALRFSQNLEHFDLRGNGFHCGTLRDF-FSKNQRVQTVAKQTVKKLTGQNEEECTVPTLG 289
Query: 540 RLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFE 599
D+ P L+ L E+ L L G++ L E
Sbjct: 290 HYGAYCCEDLPA--PFADRLIALKRKEHAL--------------LSGQGSETERLEC--E 331
Query: 600 IESQLRLTYFDASSNKLTELTGNA--IPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDL 657
E+Q R DA + + + L + + L
Sbjct: 332 RENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQ 391
Query: 658 VGNRLKNINQTALRISPLPSHKNIPD 683
+ SPL + I
Sbjct: 392 QAVGQIELQHATEEQSPLQLLRAIVK 417
Score = 189 bits (482), Expect = 7e-52
Identities = 64/399 (16%), Positives = 134/399 (33%), Gaps = 33/399 (8%)
Query: 286 PELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRL 345
E+ K + ++S+ + + LDLS N L++ ++AA + +L
Sbjct: 3 HEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQ--ISAADLAPFTKL 60
Query: 346 VVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKR 405
+LN++ N + + + L L+ L L NN ++ + ++ TL +NN + R
Sbjct: 61 ELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-----LVGPSIETLHAANNNISR 113
Query: 406 IESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPK--VLRNLHS 463
+ + + L NN++ + + + +Q L N++ + + + +
Sbjct: 114 VSCSRGQGKKN---IYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170
Query: 464 LKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQ 523
L+ L+L N I ++ + +L L L+ N ++ + F+ + +T ++L +NK+
Sbjct: 171 LEHLNLQYNFIYDVKGQVV--FAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLV 227
Query: 524 KVEAGTFDNNSNLVAIRLDGNYLT--DIGGLFPKLPNLVWLNISENLLEWFDYALIPADL 581
+E + NL L GN + F K + +
Sbjct: 228 LIEKA-LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVP 286
Query: 582 QWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAI---------PHSVENLF 632
+L F RL + L G+ +
Sbjct: 287 TLGHYGAYCCEDLPAPFAD----RLIALKRKEHALLSGQGSETERLECERENQARQREID 342
Query: 633 LTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALR 671
V K ++ L R
Sbjct: 343 ALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRR 381
Score = 158 bits (402), Expect = 2e-41
Identities = 62/408 (15%), Positives = 129/408 (31%), Gaps = 45/408 (11%)
Query: 107 SFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHNVFTD-- 164
++ L I +S +G + ++ +++N T
Sbjct: 94 ELLVGPSIETLHAANNNISRVSCSRGQGKK-----------------NIYLANNKITMLR 136
Query: 165 -----ELQSLESLDLSMNSIWTLP-DAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTAR 218
++ LDL +N I T+ + +L +LNL N + +V
Sbjct: 137 DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFA----- 191
Query: 219 CGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSV 278
L+ LDLS+N + E F + + + L+ N L + AL +L +L
Sbjct: 192 ---KLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEK-ALRFSQNLEHFDLRG 246
Query: 279 NNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNN---ELTEEWVN 335
N F S++ + + ++ L T + +L + +
Sbjct: 247 NGFHCGTLRDF-FSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFAD 305
Query: 336 AATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHT 395
+L+ ++ +L+ + R + + Q ++ T
Sbjct: 306 RLIALKRKEHALLSGQGSETERLECERE-NQARQREIDALKEQYRTVIDQVTLRKQAKIT 364
Query: 396 LIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTE-- 453
L L SN + L + ++A + + LQ + E
Sbjct: 365 LEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIEL-QHATEEQSPLQLLRAIVKRYEEMY 423
Query: 454 IPKVLRNLHSLKTLDLGDNLIT--EINNLSLNSLHQLAGLRLTENNIS 499
+ + ++++ D+ + T N L L+ A L L N +
Sbjct: 424 VEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANAT 471
Score = 135 bits (342), Expect = 1e-33
Identities = 64/478 (13%), Positives = 145/478 (30%), Gaps = 78/478 (16%)
Query: 454 IPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLT 513
I ++ +N + K + D+ + + S + L L+ N +S IS + L
Sbjct: 2 IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61
Query: 514 ILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGL-----------------FPKL 556
+LNL+SN + + ++ S L + L+ NY+ ++ +
Sbjct: 62 LLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRG 119
Query: 557 PNLVWLNISENLLEWFDYALIP--ADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSN 614
+ ++ N + + +Q+LD+ N+I + S L + + N
Sbjct: 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179
Query: 615 KLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISP 674
+ ++ G + ++ L L++N ++ + P F +T + L N+L I + +
Sbjct: 180 FIYDVKGQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVLIEKA---LRF 235
Query: 675 LPSHKNIPDFYIGENPFQCDCNMQWLQSYSVNKERNKPNLVDLDTVTCKLLYNRANPAIL 734
+ ++ + N F C + + TV + +
Sbjct: 236 SQNLEHF---DLRGNGFHCGTLRDFF-----------SKNQRVQTVAKQTVKKLTGQNEE 281
Query: 735 LKEAHSNQFLCEYETNCAPLCHCCDFDACDCEMTCPNNCTCYHDVSWEANVIDCSTGGYD 794
CT + A + +
Sbjct: 282 -------------------------------------ECTVPTLGHYGAYCCEDLPAPFA 304
Query: 795 NQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELI 854
++L + L G+ + + + + + T+ ++ + I
Sbjct: 305 DRLIALKRKEHALLSGQGSETERLECERE-NQARQREIDALKEQYRTVIDQVTLRKQAKI 363
Query: 855 ILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRIT 912
L L E L Q I + + L++L+ R
Sbjct: 364 TLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQ-HATEEQSPLQLLRAIVKRYE 420
Score = 78.7 bits (194), Expect = 3e-15
Identities = 24/155 (15%), Positives = 46/155 (29%), Gaps = 26/155 (16%)
Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
L+ N I V G + ++L ++ + + + + L L N +
Sbjct: 102 ETLHAANNNISRVSCSRGQG---KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT 158
Query: 866 I-RGYEFERLENLRELYLQYNKIIYISNRTFL-SLTHL--------------------KV 903
+ + L L LQYN I + + L L
Sbjct: 159 VNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTW 218
Query: 904 LQLDHNRITSF-AVWHLSSQIQSITLTSNPWSCDC 937
+ L +N++ S ++ L N + C
Sbjct: 219 ISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGT 253
Score = 74.9 bits (184), Expect = 7e-14
Identities = 22/126 (17%), Positives = 44/126 (34%), Gaps = 8/126 (6%)
Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
+ + + + ++ L L+ + + I +L +L L N L E
Sbjct: 13 KIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE 72
Query: 866 IRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSSQIQS 925
+ E L LR L L N + + ++ L +N I+ + ++
Sbjct: 73 TL--DLESLSTLRTLDLNNNYVQELLV-----GPSIETLHAANNNISRVSCSRGQG-KKN 124
Query: 926 ITLTSN 931
I L +N
Sbjct: 125 IYLANN 130
Score = 71.8 bits (176), Expect = 5e-13
Identities = 24/245 (9%), Positives = 54/245 (22%), Gaps = 23/245 (9%)
Query: 105 PGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSL--------- 155
FQ+ + +S+ K+ + + R + L+ L + +L
Sbjct: 207 GPEFQSAAGVTWISLRNNKLVLIEK-ALRFSQNLEHFDL--RGNGFHCGTLRDFFSKNQR 263
Query: 156 --DISHNVFTD-------ELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNV 206
++ E LP L +L
Sbjct: 264 VQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGS 323
Query: 207 ATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALD 266
T R +D + ++ + R L + L +
Sbjct: 324 ETERLEC--ERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRR 381
Query: 267 GLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSN 326
L + + QS + + + D+
Sbjct: 382 AHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQ 441
Query: 327 NELTE 331
++ T+
Sbjct: 442 HKETQ 446
Score = 70.6 bits (173), Expect = 1e-12
Identities = 30/145 (20%), Positives = 55/145 (37%), Gaps = 21/145 (14%)
Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
EL L GN + + + KL++L L+S+ + + L L L L++N + E
Sbjct: 37 KELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE 94
Query: 866 ----------------IRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHN 909
I R + + +YL NKI + + + ++ L L N
Sbjct: 95 LLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN 154
Query: 910 RITSF---AVWHLSSQIQSITLTSN 931
I + + S ++ + L N
Sbjct: 155 EIDTVNFAELAASSDTLEHLNLQYN 179
Score = 69.5 bits (170), Expect = 3e-12
Identities = 17/87 (19%), Positives = 33/87 (37%), Gaps = 2/87 (2%)
Query: 828 KLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKI 887
+ +I + S ++ + L L N L++I + L L L N +
Sbjct: 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL 70
Query: 888 IYISNRTFLSLTHLKVLQLDHNRITSF 914
+ SL+ L+ L L++N +
Sbjct: 71 YETLD--LESLSTLRTLDLNNNYVQEL 95
Score = 64.1 bits (156), Expect = 2e-10
Identities = 18/85 (21%), Positives = 34/85 (40%)
Query: 847 FNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQL 906
I ++ D+ L + + N++EL L N + IS T L++L L
Sbjct: 6 KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65
Query: 907 DHNRITSFAVWHLSSQIQSITLTSN 931
N + S ++++ L +N
Sbjct: 66 SSNVLYETLDLESLSTLRTLDLNNN 90
Score = 57.9 bits (140), Expect = 1e-08
Identities = 30/156 (19%), Positives = 50/156 (32%), Gaps = 6/156 (3%)
Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
L L N I V KL+ L L+S+ + + F + + L +N+L
Sbjct: 172 EHLNLQYNFIYDVKGQVVF--AKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRNNKLVL 228
Query: 866 IRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSSQIQS 925
I +NL L+ N + R F + +V + + +
Sbjct: 229 IEK-ALRFSQNLEHFDLRGNGFHCGTLRDFF-SKNQRVQTVAKQTVKKLTG-QNEEECTV 285
Query: 926 ITLTSNPWSCDCDFTEKFRDYLQRSRSSVHDISQIR 961
TL C D F D L + H + +
Sbjct: 286 PTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQ 321
Score = 47.9 bits (114), Expect = 2e-05
Identities = 12/132 (9%), Positives = 30/132 (22%), Gaps = 1/132 (0%)
Query: 784 NVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIH 843
+ TG + + + P + RK+ +L S E +
Sbjct: 270 QTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLE 329
Query: 844 NKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKV 903
+ N + + + + R + L + + + + L
Sbjct: 330 CERENQAR-QREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDG 388
Query: 904 LQLDHNRITSFA 915
Sbjct: 389 TLQQAVGQIELQ 400
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell
WALL attached, leucine rich repeat; 1.5A {Listeria
monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A*
1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Length = 466
Score = 228 bits (584), Expect = 2e-65
Identities = 120/480 (25%), Positives = 192/480 (40%), Gaps = 44/480 (9%)
Query: 189 PLQSLSYLNLTQ-NKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRL 247
PL S + T N++ + L + + + L ++
Sbjct: 2 PLGSATITQDTPINQIFTDTALA-----------EKMKTVLGKTNVTDTVS--QTDLDQV 48
Query: 248 QELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINV 307
L + + ++ LN+LT +N S N L +I P L ++ + NN I
Sbjct: 49 TTLQADRLGIKSID--GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD 104
Query: 308 LAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLY 367
+ P LT L L L NN++T + L L L ++ N ++ + + L
Sbjct: 105 ITP--LANLTNLTGLTLFNNQIT----DIDPLKNLTNLNRLELSSNTISDISA--LSGLT 156
Query: 368 RLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNEL 427
LQ L N + A+L+ L L +S+NK+ I L LT L L NN++
Sbjct: 157 SLQQLSFGNQVTDLK---PLANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQI 211
Query: 428 EYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQ 487
I L T+L + LNGN+L +I L +L +L LDL +N I+ + LS L +
Sbjct: 212 SDIT--PLGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAPLS--GLTK 266
Query: 488 LAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLT 547
L L+L N ISNIS L+ LT L L N+++ + N NL + L N ++
Sbjct: 267 LTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNIS 322
Query: 548 DIGGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLT 607
DI + L L L N + ++ WL NQIS+L + + R+T
Sbjct: 323 DISPV-SSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLT---PLANLTRIT 378
Query: 608 YFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQ 667
+ T N + + N + + P T + T D+ N N+
Sbjct: 379 QLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLPSYTNE 438
Score = 209 bits (534), Expect = 9e-59
Identities = 99/414 (23%), Positives = 176/414 (42%), Gaps = 30/414 (7%)
Query: 264 ALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLD 323
L L N+ + + + I + L L ++
Sbjct: 19 TDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSIDG--VEYLNNLTQIN 74
Query: 324 LSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIH 383
SNN+LT + L +LV + + N++ + +L L L L NNQI I
Sbjct: 75 FSNNQLT----DITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDI- 127
Query: 384 RNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQD 443
+ +L+NL+ L +S+N + I + L LT+L LS N + L N T+L+
Sbjct: 128 -DPLKNLTNLNRLELSSNTISDISA--LSGLTSLQQLSFGNQVTDLK---PLANLTTLER 181
Query: 444 FHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISK 503
++ NK+++I VL L +L++L +N I++I L L L L L N + +I
Sbjct: 182 LDISSNKVSDIS-VLAKLTNLESLIATNNQISDITPLG--ILTNLDELSLNGNQLKDIG- 237
Query: 504 GVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLN 563
L+ LT L+LA+N+I + + L ++L N +++I L L L L
Sbjct: 238 -TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLA-GLTALTNLE 293
Query: 564 ISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNA 623
++EN LE +L +L ++ N IS++ + S +L +NK+++++ A
Sbjct: 294 LNENQLEDISPISNLKNLTYLTLYFNNISDIS---PVSSLTKLQRLFFYNNKVSDVSSLA 350
Query: 624 IPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPS 677
++ L +N IS + P +T++ L N +P+
Sbjct: 351 NLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPN 402
Score = 205 bits (524), Expect = 2e-57
Identities = 108/494 (21%), Positives = 197/494 (39%), Gaps = 59/494 (11%)
Query: 106 GSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHNVFTDE 165
G + +D I + + L + L N ++ V +
Sbjct: 1 GPLGSATITQD-----TPINQIFTDT--ALAEKMKTVLGKTN---------VTDTVSQTD 44
Query: 166 LQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRV 225
L + +L I ++ L +L+ +N + N+L+++ L
Sbjct: 45 LDQVTTLQADRLGIKSIDG--VEYLNNLTQINFSNNQLTDITPLKNL--------TKLVD 94
Query: 226 LDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIP 285
+ ++NN + + L+ L L L N +T + L L +L L LS N + +I
Sbjct: 95 ILMNNNQIADITP--LANLTNLTGLTLFNNQITDID--PLKNLTNLNRLELSSNTISDIS 150
Query: 286 PELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRL 345
+ L+++ N ++ LT L LD+S+N++++ + + L L
Sbjct: 151 A--LSGLTSLQQLSFGNQVTDLKP---LANLTTLERLDISSNKVSDI----SVLAKLTNL 201
Query: 346 VVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKR 405
L N+++ + L L L L NQ++ I T ASL+NL L ++NN++
Sbjct: 202 ESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISN 257
Query: 406 IESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLK 465
+ L LT L+ L L N++ I L T+L + LN N+L +I + NL +L
Sbjct: 258 LA--PLSGLTKLTELKLGANQISNIS--PLAGLTALTNLELNENQLEDIS-PISNLKNLT 312
Query: 466 TLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKV 525
L L N I++I+ +S SL +L L N +S++S L+ + L+ N+I +
Sbjct: 313 YLTLYFNNISDISPVS--SLTKLQRLFFYNNKVSDVS--SLANLTNINWLSAGHNQISDL 368
Query: 526 EAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYALIPAD---LQ 582
N + + + L+ T+ + N+ N +N+ +D
Sbjct: 369 TP--LANLTRITQLGLNDQAWTNAPVNY--KANVSIPNTVKNVTGALIAPATISDGGSYT 424
Query: 583 WLDIHGNQISELGN 596
DI N S
Sbjct: 425 EPDITWNLPSYTNE 438
Score = 165 bits (421), Expect = 6e-44
Identities = 95/395 (24%), Positives = 170/395 (43%), Gaps = 49/395 (12%)
Query: 101 SSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHN--TDWSTMS---- 154
+ ++P + L L D+ + +I +++ L L LTL +N TD +
Sbjct: 81 TDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLF-NNQITDIDPLKNLTN 135
Query: 155 ---LDISHNVFTD-----ELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNV 206
L++S N +D L SL+ L P L +L L+++ NK+S++
Sbjct: 136 LNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKP---LANLTTLERLDISSNKVSDI 192
Query: 207 ATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALD 266
+ + NL L +NN + L+ L EL L GN L + L
Sbjct: 193 SVLAKLT--------NLESLIATNNQISDIT--PLGILTNLDELSLNGNQLKDIG--TLA 240
Query: 267 GLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSN 326
L +LT L+L+ N + N+ P + L E+ L N I+ ++P LT L L+L+
Sbjct: 241 SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNE 296
Query: 327 NELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNT 386
N+L + + S L L L + +N ++ + L +LQ L NN++ + ++
Sbjct: 297 NQLE----DISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SS 348
Query: 387 FASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHL 446
A+L+N++ L +N++ + L +LT ++ L L++ N N S+ +
Sbjct: 349 LANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKAN-VSIPNTVK 405
Query: 447 NGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLS 481
N P + + S D+ NL + N +S
Sbjct: 406 NVTGALIAPATISDGGSYTEPDITWNLPSYTNEVS 440
Score = 151 bits (384), Expect = 4e-39
Identities = 78/366 (21%), Positives = 140/366 (38%), Gaps = 40/366 (10%)
Query: 107 SFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHNVFTDEL 166
+ L +L L + I ++S + GL L+ L+ TD ++ L
Sbjct: 129 PLKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSFGNQVTDLKPLA----------NL 176
Query: 167 QSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVL 226
+LE LD+S N + + L +L L T N++S++ NL L
Sbjct: 177 TTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISDITPLGILT--------NLDEL 226
Query: 227 DLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPP 286
L+ N + + L+ L +L L N ++ L L GL LT L L N + NI P
Sbjct: 227 SLNGNQLKDIG--TLASLTNLTDLDLANNQISNL--APLSGLTKLTELKLGANQISNISP 282
Query: 287 ELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLV 346
L + L N + ++P + L L L L N ++ + + S L +L
Sbjct: 283 --LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNIS----DISPVSSLTKLQ 334
Query: 347 VLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRI 406
L NK++ + S +L + L +NQI + A+L+ + L +++
Sbjct: 335 RLFFYNNKVSDVSS--LANLTNINWLSAGHNQISDL--TPLANLTRITQLGLNDQAWTNA 390
Query: 407 ESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKT 466
N +++ + + L I + + S + + N + +V T
Sbjct: 391 PVNYKANVSIPNTVKNVTGAL--IAPATISDGGSYTEPDITWNLPSYTNEVSYTFSQPVT 448
Query: 467 LDLGDN 472
+ G
Sbjct: 449 IGKGTT 454
Score = 69.2 bits (170), Expect = 4e-12
Identities = 36/210 (17%), Positives = 72/210 (34%), Gaps = 29/210 (13%)
Query: 108 FQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHN--TDWSTMS-------LDIS 158
L L +L + +I N+S GL L L L N D S +S L +
Sbjct: 261 LSGLTKLTELKLGANQISNISP--LAGLTALTNLELN-ENQLEDISPISNLKNLTYLTLY 317
Query: 159 HNVFTD-----ELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSN 213
N +D L L+ L N + + L ++++L+ N++S++ +
Sbjct: 318 FNNISDISPVSSLTKLQRLFFYNNKVSDVS--SLANLTNINWLSAGHNQISDLTPLANLT 375
Query: 214 YDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTV 273
+ L L++ ++ + P + +S + L A + S T
Sbjct: 376 --------RITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPAT--ISDGGSYTE 425
Query: 274 LNLSVNNLVNIPPELFNQSRDLKEVYLQNN 303
+++ N + S+ +
Sbjct: 426 PDITWNLPSYTNEVSYTFSQPVTIGKGTTT 455
Score = 65.0 bits (159), Expect = 8e-11
Identities = 37/129 (28%), Positives = 57/129 (44%), Gaps = 8/129 (6%)
Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
T+L L N+I G KL L L ++ + I GL L L L++N+L +
Sbjct: 246 TDLDLANNQI--SNLAPLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLED 301
Query: 866 IRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSSQIQS 925
I L+NL L L +N I IS SLT L+ L +N+++ + + I
Sbjct: 302 IS--PISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDVSSLANLTNINW 357
Query: 926 ITLTSNPWS 934
++ N S
Sbjct: 358 LSAGHNQIS 366
Score = 64.6 bits (158), Expect = 1e-10
Identities = 28/127 (22%), Positives = 52/127 (40%), Gaps = 8/127 (6%)
Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
L + N++ + L+ L ++ + I L L L L+ N+L +
Sbjct: 180 ERLDISSNKVSDISV--LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD 235
Query: 866 IRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSSQIQS 925
I L NL +L L N+I ++ LT L L+L N+I++ + + + +
Sbjct: 236 IGT--LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTN 291
Query: 926 ITLTSNP 932
+ L N
Sbjct: 292 LELNENQ 298
Score = 60.0 bits (146), Expect = 3e-09
Identities = 25/110 (22%), Positives = 46/110 (41%), Gaps = 10/110 (9%)
Query: 806 TELYLDGNRIPVVGSHSFIGR-KKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLT 864
T L D I + + L + +++ + I L +L+ + +++N++
Sbjct: 49 TTLQADRLGIKSI---DGVEYLNNLTQINFSNNQLTDI--TPLKNLTKLVDILMNNNQIA 103
Query: 865 EIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSF 914
+I L NL L L N+I I +LT+L L+L N I+
Sbjct: 104 DIT--PLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI 149
Score = 57.7 bits (140), Expect = 2e-08
Identities = 31/126 (24%), Positives = 53/126 (42%), Gaps = 9/126 (7%)
Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
T L L N+I L L L+S+ + I +GL L L N++T+
Sbjct: 115 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISDISA--LSGLTSLQQLSFG-NQVTD 169
Query: 866 IRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSSQIQS 925
++ L L L + NK+ IS LT+L+ L +N+I+ + + +
Sbjct: 170 LK--PLANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISDITPLGILTNLDE 225
Query: 926 ITLTSN 931
++L N
Sbjct: 226 LSLNGN 231
Score = 54.6 bits (132), Expect = 1e-07
Identities = 18/88 (20%), Positives = 37/88 (42%), Gaps = 6/88 (6%)
Query: 827 KKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNK 886
+ L ++V + L ++ L+ D + I G E L NL ++ N+
Sbjct: 24 AEKMKTVLGKTNVTDT--VSQTDLDQVTTLQADRLGIKSIDG--VEYLNNLTQINFSNNQ 79
Query: 887 IIYISNRTFLSLTHLKVLQLDHNRITSF 914
+ I+ +LT L + +++N+I
Sbjct: 80 LTDITP--LKNLTKLVDILMNNNQIADI 105
Score = 51.5 bits (124), Expect = 1e-06
Identities = 20/126 (15%), Positives = 40/126 (31%), Gaps = 6/126 (4%)
Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
T L L N I KLQ LF ++ V + + L + L N++++
Sbjct: 312 TYLTLYFNNI--SDISPVSSLTKLQRLFFYNNKVSDVSS--LANLTNINWLSAGHNQISD 367
Query: 866 IRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSSQIQS 925
+ L + +L L +++ ++ + + A
Sbjct: 368 LT--PLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTE 425
Query: 926 ITLTSN 931
+T N
Sbjct: 426 PDITWN 431
Score = 38.4 bits (90), Expect = 0.013
Identities = 12/74 (16%), Positives = 22/74 (29%), Gaps = 4/74 (5%)
Query: 858 LDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVW 917
D + +I L + L + + L + LQ D I S
Sbjct: 9 TQDTPINQIFT--DTALAEKMKTVLGKTNVTDTV--SQTDLDQVTTLQADRLGIKSIDGV 64
Query: 918 HLSSQIQSITLTSN 931
+ + I ++N
Sbjct: 65 EYLNNLTQINFSNN 78
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein;
innate immunity, leucine-rich repeat, innate immune
receptor system; HET: NAG; 2.47A {Danio rerio} PDB:
3v44_A*
Length = 455
Score = 224 bits (572), Expect = 5e-64
Identities = 89/395 (22%), Positives = 150/395 (37%), Gaps = 38/395 (9%)
Query: 168 SLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLS-NVATFSFSNYDTARCGINLRVL 226
+ +DLS+NSI L + F LQ L +L + Q + +F +L +L
Sbjct: 31 HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGL------SSLIIL 84
Query: 227 DLSNNSFDSLPAEGFSRLSRLQELYLQGNILT--FLADHALDGLNSLTVLNLSVNNLVNI 284
L N F L F+ L+ L+ L L L L+ + L SL +L L NN+ I
Sbjct: 85 KLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKI 144
Query: 285 PPE-LFNQSRDLKEVYLQNNSINVLAPGIFNVLT--QLIVLDLSNNELTE------EWVN 335
P F R + L N + + +L LS+ L + W
Sbjct: 145 QPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEK 204
Query: 336 AATFSGLHRLVVLNIAYNKMNKLDSSIFKDLY---RLQVLHLENNQIE--SIHRNTFASL 390
+ L+++ N + + F D ++Q L L N+ S F
Sbjct: 205 CGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDP 264
Query: 391 SNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNK 450
N + + +K L +++ + ++ + T L+ L N+
Sbjct: 265 DNFTFKGLEASGVK--------------TCDLSKSKIFALLKSVFSHFTDLEQLTLAQNE 310
Query: 451 LTEIPK-VLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKL 509
+ +I L L L+L N + I++ +L +L L L+ N+I + F L
Sbjct: 311 INKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGL 370
Query: 510 SVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGN 544
L L L +N+++ V G FD ++L I L N
Sbjct: 371 PNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405
Score = 219 bits (560), Expect = 2e-62
Identities = 86/376 (22%), Positives = 165/376 (43%), Gaps = 31/376 (8%)
Query: 222 NLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGN-ILTFLADHALDGLNSLTVLNLSVNN 280
++ +DLS NS L FSRL LQ L ++ + ++ GL+SL +L L N
Sbjct: 31 HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90
Query: 281 LVNIPPELFNQSRDLKEVYLQNNSIN--VLAPGIFNVLTQLIVLDLSNNELTEEWVNAAT 338
+ + FN +L+ + L +++ VL+ F LT L +L L +N + + A+
Sbjct: 91 FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKK-IQPASF 149
Query: 339 FSGLHRLVVLNIAYNKMNKLDSSIFKDLY--RLQVLHLENNQIESIHRN--------TFA 388
F + R VL++ +NK+ + + +L L + ++ ++
Sbjct: 150 FLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPF 209
Query: 389 SLSNLHTLIMSNNKLKRIESNSLDSLTALSVL-------------SLDNNELEYIEENAL 435
+++ TL +S N K + A + + S + + +
Sbjct: 210 KNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF 269
Query: 436 KN--STSLQDFHLNGNKLTEIPK-VLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLR 492
K ++ ++ L+ +K+ + K V + L+ L L N I +I++ + L L L
Sbjct: 270 KGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLN 329
Query: 493 LTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDI-GG 551
L++N + +I +FE L L +L+L+ N I+ + +F NL + LD N L + G
Sbjct: 330 LSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDG 389
Query: 552 LFPKLPNLVWLNISEN 567
+F +L +L + + N
Sbjct: 390 IFDRLTSLQKIWLHTN 405
Score = 209 bits (533), Expect = 7e-59
Identities = 91/387 (23%), Positives = 148/387 (38%), Gaps = 39/387 (10%)
Query: 113 DLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHNVFTDELQSLESL 172
+ + + I L+ SF L+ L+ L + + T L I +N F L SL L
Sbjct: 31 HVNYVDLSLNSIAELNETSFSRLQDLQFLKV-----EQQTPGLVIRNNTF-RGLSSLIIL 84
Query: 173 DLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVA--TFSFSNYDTARCGINLRVLDLSN 230
L N L F L +L L LTQ L F +L +L L +
Sbjct: 85 KLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLT------SLEMLVLRD 138
Query: 231 NSFDSLPAEG-FSRLSRLQELYLQGNILTFLADHALDGLNS--LTVLNLSVNNLVNIPP- 286
N+ + F + R L L N + + + L T+L LS L ++
Sbjct: 139 NNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEY 198
Query: 287 -------ELFNQSRDLKEVYLQNNSINVLAPGIF---NVLTQLIVLDLSNNELTEEWVN- 335
++ + + L N F T++ L LSN+
Sbjct: 199 WLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGH 258
Query: 336 -------AATFSGLHR--LVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNT 386
TF GL + +++ +K+ L S+F L+ L L N+I I N
Sbjct: 259 TNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNA 318
Query: 387 FASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHL 446
F L++L L +S N L I+S ++L L VL L N + + + + +L++ L
Sbjct: 319 FWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELAL 378
Query: 447 NGNKLTEIPK-VLRNLHSLKTLDLGDN 472
+ N+L +P + L SL+ + L N
Sbjct: 379 DTNQLKSVPDGIFDRLTSLQKIWLHTN 405
Score = 204 bits (522), Expect = 2e-57
Identities = 94/378 (24%), Positives = 144/378 (38%), Gaps = 44/378 (11%)
Query: 101 SSLSPGSFQTLIDLKDLSVEFCKIG-NLSAGSFRGLRKLKTLTLRTHNTDWSTMSL-DIS 158
+ L+ SF L DL+ L VE G + +FRGL L L L +N +
Sbjct: 43 AELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKL-DYN------QFLQLE 95
Query: 159 HNVFTDELQSLESLDLSMNSI--WTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDT 216
F + L +LE L L+ ++ L F PL SL L L N + + SF
Sbjct: 96 TGAF-NGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMR 154
Query: 217 ARCGINLRVLDLSNNSFDSLPAEGFSRL--SRLQELYLQGNILTFL--------ADHALD 266
VLDL+ N S+ E L L L +
Sbjct: 155 -----RFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPF 209
Query: 267 GLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVY-------------LQNNSINVLAPGIF 313
S+T L+LS N + F + ++ + + F
Sbjct: 210 KNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF 269
Query: 314 NVL--TQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQV 371
L + + DLS +++ + + FS L L +A N++NK+D + F L L
Sbjct: 270 KGLEASGVKTCDLSKSKIFA--LLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLK 327
Query: 372 LHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIE 431
L+L N + SI F +L L L +S N ++ + S L L L+LD N+L+ +
Sbjct: 328 LNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVP 387
Query: 432 ENALKNSTSLQDFHLNGN 449
+ TSLQ L+ N
Sbjct: 388 DGIFDRLTSLQKIWLHTN 405
Score = 187 bits (476), Expect = 3e-51
Identities = 100/524 (19%), Positives = 170/524 (32%), Gaps = 117/524 (22%)
Query: 448 GNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNIS-NISKGVF 506
L ++P++ ++ +DL N I E+N S + L L L++ + I F
Sbjct: 19 NRGLHQVPELPAHV---NYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTF 75
Query: 507 EKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDI---GGLFPKLPNLVWLN 563
LS L IL L N+ ++E G F+ +NL + L L G F L +L
Sbjct: 76 RGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSL---- 131
Query: 564 ISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNA 623
+ L + N I ++ ++F +
Sbjct: 132 ------------------EMLVLRDNNIKKIQP---------ASFFL----NMRRFH--- 157
Query: 624 IPHSVENLFLTNNLISKVQPYTF--FMKPNLTRVDLVGNRLKNINQTALRISPLPSHKNI 681
L LT N + + F + T + L L+++N+ L +
Sbjct: 158 ------VLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGN---- 207
Query: 682 PDFYIGENPFQCDCNMQWLQSYSVNKERNKPNLVDLDTVTCKLLYNRANPAILLKEAHSN 741
+ ++ L L + K
Sbjct: 208 ---------PFKNTSITTLD-----------------------LSGNGFKESMAKRFFDA 235
Query: 742 QFLCEYETNCAPLCHCCDFDACDCEMTCPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRI 801
+ ++ + P+N T G + +
Sbjct: 236 IAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFK--------------GLEASGV---- 277
Query: 802 PMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDN 861
L ++I + F L+ L L + + I + F GL L+ L L N
Sbjct: 278 ----KTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN 333
Query: 862 RLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSF---AVWH 918
L I FE L+ L L L YN I + +++FL L +LK L LD N++ S
Sbjct: 334 FLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDR 393
Query: 919 LSSQIQSITLTSNPWSCDCDFTEKFRDYLQRSRSSVHDISQIRC 962
L+S +Q I L +NPW C C + +L ++ +C
Sbjct: 394 LTS-LQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQG--SAKC 434
Score = 141 bits (358), Expect = 8e-36
Identities = 77/414 (18%), Positives = 140/414 (33%), Gaps = 91/414 (21%)
Query: 391 SNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELE-YIEENALKNSTSLQDFHLNGN 449
++++ + +S N + + S L L L ++ I N + +SL L+ N
Sbjct: 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89
Query: 450 KLTEIP-KVLRNLHSLKTLDLGDNLITE--INNLSLNSLHQLAGLRLTENNISNIS-KGV 505
+ ++ L +L+ L L + ++ L L L L +NNI I
Sbjct: 90 QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF 149
Query: 506 FEKLSVLTILNLASNKIQKVEAGTFDN--NSNLVAIRLDGNYLTDIG---------GLFP 554
F + +L+L NK++ + N + +RL L D+ G
Sbjct: 150 FLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPF 209
Query: 555 KLPNLVWLNISENLL-----EWFDYALIPADLQWLDIHGNQISELG-----------NYF 598
K ++ L++S N + F A+ +Q L + + F
Sbjct: 210 KNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF 269
Query: 599 EIESQLRLTYFDASSNKLTELTGNAIPH--SVENLFLTNNLISKVQPYTFFMKPNLTRVD 656
+ + D S +K+ L + H +E L L N I+K+ F+ +L +++
Sbjct: 270 KGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLN 329
Query: 657 LVGNRLKNI------NQTALR--------ISPLPSH------------------KNIPDF 684
L N L +I N L I L K++PD
Sbjct: 330 LSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDG 389
Query: 685 -----------YIGENPFQCDCNM-----QWLQSYSVNKERNKPNLVDLDTVTC 722
++ NP+ C C +WL NK + + + C
Sbjct: 390 IFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWL---------NKNSQKEQGSAKC 434
Score = 112 bits (283), Expect = 3e-26
Identities = 45/178 (25%), Positives = 66/178 (37%), Gaps = 18/178 (10%)
Query: 769 CPNNCTCYHDVSWEANVIDCSTGGYDNQLP--PRIPMDATELYLDGNRIPVVGSHSFIGR 826
+ C+ C + L P +P + L N I + SF
Sbjct: 4 GTSECSVIG------YNAICI----NRGLHQVPELPAHVNYVDLSLNSIAELNETSFSRL 53
Query: 827 KKLQILFLNSSHVET-IHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYN 885
+ LQ L + I N TF GL LIIL+LD N+ ++ F L NL L L
Sbjct: 54 QDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQC 113
Query: 886 KI--IYISNRTFLSLTHLKVLQLDHNRITSF---AVWHLSSQIQSITLTSNPWSCDCD 938
+ +S F LT L++L L N I + + + + LT N C+
Sbjct: 114 NLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICE 171
Score = 100 bits (252), Expect = 2e-22
Identities = 53/196 (27%), Positives = 75/196 (38%), Gaps = 15/196 (7%)
Query: 90 RIECGDMLFFQSSLSPGSFQTLI----DLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRT 145
+ F +++ Q+LI S + +F+GL T
Sbjct: 223 GFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDL 282
Query: 146 HNTDWSTMSLDISHNVFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSN 205
+ + +VF LE L L+ N I + D F L L LNL+QN L +
Sbjct: 283 SKSKIFA----LLKSVF-SHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGS 337
Query: 206 VATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHAL 265
+ + F N D L VLDLS N +L + F L L+EL L N L + D
Sbjct: 338 IDSRMFENLD------KLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIF 391
Query: 266 DGLNSLTVLNLSVNNL 281
D L SL + L N
Sbjct: 392 DRLTSLQKIWLHTNPW 407
Score = 77.5 bits (191), Expect = 7e-15
Identities = 40/134 (29%), Positives = 57/134 (42%), Gaps = 13/134 (9%)
Query: 101 SSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHN 160
+L F DL+ L++ +I + +F GL L L L + N S I
Sbjct: 288 FALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNL-SQNFLGS-----IDSR 341
Query: 161 VFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCG 220
+F + L LE LDLS N I L D F L +L L L N+L +V F
Sbjct: 342 MF-ENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLT----- 395
Query: 221 INLRVLDLSNNSFD 234
+L+ + L N +D
Sbjct: 396 -SLQKIWLHTNPWD 408
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1,
lipopeptide, innate immunity, glycoPro immune response,
inflammatory response, leucine-rich repeat membrane,
receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Length = 520
Score = 214 bits (546), Expect = 7e-60
Identities = 103/511 (20%), Positives = 187/511 (36%), Gaps = 35/511 (6%)
Query: 222 NLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNL 281
+L++S N L LS+L+ L + N + +L L L+LS N L
Sbjct: 22 KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKL 81
Query: 282 VNIPPELFNQSRDLKEVYLQNNSINVLA-PGIFNVLTQLIVLDLSNNELTEEWVNAATFS 340
V I + + +LK + L N+ + L F ++QL L LS L + ++
Sbjct: 82 VKIS---CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK-----SSVL 133
Query: 341 GLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSN 400
+ L + + D LQ + E+ I F + ++ ++N
Sbjct: 134 PIAHLNISKVLLVLGETYGEKE--DPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVAN 191
Query: 401 NKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRN 460
+L I+ D+ + + + L ++ N ++ +L + N I +++ +
Sbjct: 192 LELSNIKCVLEDNKCSYFL-----SILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWH 246
Query: 461 LH----SLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILN 516
S+ + L L + S SL L+ ++ + ++E S + I N
Sbjct: 247 TTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKN 306
Query: 517 LASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDI-GGLFPKLPNLVWLNISENLLEWFDYA 575
+ + V S + + N LTD L L L + N L+
Sbjct: 307 FTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKI 366
Query: 576 LIPAD----LQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPHSVENL 631
LQ LDI N +S + L + SSN LT+ +P ++ L
Sbjct: 367 AEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVL 426
Query: 632 FLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHKNIPDFYIGENPF 691
L +N I + P L +++ N+LK++ L S + I ++ NP+
Sbjct: 427 DLHSNKIKSI-PKQVVKLEALQELNVASNQLKSVPDGIF--DRLTSLQKI---WLHTNPW 480
Query: 692 QCDCNMQWLQSYSVNKERNKPNLVDLDTVTC 722
C C S +NK K + + C
Sbjct: 481 DCSCPRIDYLSRWLNKNSQK----EQGSAKC 507
Score = 197 bits (502), Expect = 4e-54
Identities = 96/465 (20%), Positives = 173/465 (37%), Gaps = 41/465 (8%)
Query: 101 SSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHN 160
S L +L L+ L + +I L F+ ++L+ LD+SHN
Sbjct: 34 SELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEY--------------LDLSHN 79
Query: 161 VFT----DELQSLESLDLSMNSIWTLPD-AIFCPLQSLSYLNLTQNKLSNVATFSFSNYD 215
+L+ LDLS N+ LP F + L +L L+ L + ++ +
Sbjct: 80 KLVKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLN 139
Query: 216 TARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLN 275
++ + L + L L ++ F+ D ++ + +L + N
Sbjct: 140 ISKVLLVLGETYGEKEDPEGLQ---DFNTESLHIVFPTNKEFHFILDVSVKTVANLELSN 196
Query: 276 LS----VNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVL-----TQLIVLDLSN 326
+ N L + K L N+I +L T + +SN
Sbjct: 197 IKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISN 256
Query: 327 NELTEEW---VNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIH 383
+L + + + L L + + + S I++ + + + + +H
Sbjct: 257 VKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVH 316
Query: 384 RNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEE--NALKNSTSL 441
+ +S L SNN L + LT L L L N+L+ + + SL
Sbjct: 317 MLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSL 376
Query: 442 QDFHLNGNKLTEI--PKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNIS 499
Q ++ N ++ SL +L++ N++T+ L ++ L L N I
Sbjct: 377 QQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIK 434
Query: 500 NISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGN 544
+I K V KL L LN+ASN+++ V G FD ++L I L N
Sbjct: 435 SIPKQVV-KLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478
Score = 153 bits (388), Expect = 2e-39
Identities = 63/386 (16%), Positives = 133/386 (34%), Gaps = 21/386 (5%)
Query: 99 FQSSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDIS 158
F + F + LK L + + S L K L + +
Sbjct: 102 FDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQ 161
Query: 159 HNVFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTAR 218
+SL + + + D + +L N+ N ++ S +
Sbjct: 162 DF----NTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQ 217
Query: 219 CGINLRVLDLSNNSF---DSLPAEGFSRLSRLQELYLQGNILTFL-----ADHALDGLNS 270
L L L+N + + + + L D++ L +
Sbjct: 218 TNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKA 277
Query: 271 LTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELT 330
L++ + + ++ ++ + ++ + ++ + LD SNN LT
Sbjct: 278 LSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLT 337
Query: 331 EEWVNAATFSGLHRLVVLNIAYNKMNKLD--SSIFKDLYRLQVLHLENNQIESI-HRNTF 387
+ L L L + N++ +L + + + LQ L + N + +
Sbjct: 338 DTVFEN--CGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDC 395
Query: 388 ASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLN 447
+ +L +L MS+N L L + VL L +N+++ I + +K +LQ+ ++
Sbjct: 396 SWTKSLLSLNMSSNILTDTIFRCLPPR--IKVLDLHSNKIKSIPKQVVK-LEALQELNVA 452
Query: 448 GNKLTEIPK-VLRNLHSLKTLDLGDN 472
N+L +P + L SL+ + L N
Sbjct: 453 SNQLKSVPDGIFDRLTSLQKIWLHTN 478
Score = 121 bits (304), Expect = 1e-28
Identities = 88/545 (16%), Positives = 174/545 (31%), Gaps = 87/545 (15%)
Query: 438 STSLQDFHLNGNKLTEI-PKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTEN 496
S +++ N ++E+ + +L L+ L + N I ++ +L L L+ N
Sbjct: 20 SQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79
Query: 497 NISNISKGVFEKLSVLTILNLASNKIQKV-EAGTFDNNSNLVAIRLDGNYLTDIGGLFPK 555
+ IS L L+L+ N + F N S L + L +L
Sbjct: 80 KLVKIS---CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSS--VLP 134
Query: 556 LPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNK 615
+ +L + L E + P LQ + I N E L ++ ++ +
Sbjct: 135 IAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTN-KEFHFILDVSVKTVANLE 193
Query: 616 LTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPL 675
L+ + + ++++K+Q L ++ N +RI L
Sbjct: 194 LSNIKCVLEDNKCSYFL---SILAKLQTNPKLSNLTLNNIETTWNSF-------IRILQL 243
Query: 676 PSHKNIPDFYIGENPFQCDCNMQWLQSYSVNKERNKPNLVDLDTVTCKLLYNRANPAILL 735
H + F I Q + + + + + V D + +
Sbjct: 244 VWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFG-------FPQSYIY 296
Query: 736 KEAHSNQFLCEYETNCAPLCHCCDFDACDCEMTCPNNCTCYHDVSWEANVIDCSTGGYDN 795
+ + + + + H M CP+ + + + + N++ +
Sbjct: 297 EIFSNMNIK-NFTVSGTRMVH----------MLCPSKISPFLHLDFSNNLLTDTVFENCG 345
Query: 796 QLPPRIPMDATELYLDGNRIPVV--GSHSFIGRKKLQILFLNSSHVETIHNK-TFNGLKE 852
L + L L N++ + + K LQ L ++ + V K + K
Sbjct: 346 HLT-----ELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS 400
Query: 853 LIILRLDDNRLTEIRGYEFE---------------------RLENLRELYLQYNKIIYIS 891
L+ L + N LT+ +LE L+EL + N++ +
Sbjct: 401 LLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVP 460
Query: 892 NRTFLSLTHLKVLQLDHNRITSFAVWHLSSQIQSITLTSNPWSCDCDFTEKFRDYLQRSR 951
+ F LT L Q I L +NPW C C + +L ++
Sbjct: 461 DGIFDRLTSL----------------------QKIWLHTNPWDCSCPRIDYLSRWLNKNS 498
Query: 952 SSVHD 956
Sbjct: 499 QKEQG 503
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 208 bits (532), Expect = 1e-58
Identities = 68/229 (29%), Positives = 106/229 (46%), Gaps = 5/229 (2%)
Query: 222 NLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNL 281
N R L+L N+ + A+ F L L+ L L N + + A +GL SL L L N L
Sbjct: 76 NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL 135
Query: 282 VNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLS-NNELTEEWVNAATFS 340
IP F L+E++L+NN I + FN + L+ LDL +L ++ F
Sbjct: 136 TVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEY--ISEGAFE 193
Query: 341 GLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSN 400
GL L LN+ + + + L L+ L + N I +F LS+L L + N
Sbjct: 194 GLFNLKYLNLGMCNIKDMPN--LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMN 251
Query: 401 NKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGN 449
+++ IE N+ D L +L L+L +N L + + L + HL+ N
Sbjct: 252 SQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300
Score = 203 bits (517), Expect = 1e-56
Identities = 64/257 (24%), Positives = 106/257 (41%), Gaps = 9/257 (3%)
Query: 218 RCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLS 277
C + + +P S + L L N + + L+ L VL L
Sbjct: 51 SCSNQFSKVVCTRRGLSEVPQGIPSNT---RYLNLMENNIQMIQADTFRHLHHLEVLQLG 107
Query: 278 VNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAA 337
N++ I FN L + L +N + V+ G F L++L L L NN + + +
Sbjct: 108 RNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIES--IPSY 165
Query: 338 TFSGLHRLVVLNIA-YNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTL 396
F+ + L+ L++ K+ + F+ L+ L+ L+L I+ + L L L
Sbjct: 166 AFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP--NLTPLVGLEEL 223
Query: 397 IMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPK 456
MS N I S L++L L + N+++ IE NA SL + +L N L+ +P
Sbjct: 224 EMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPH 283
Query: 457 -VLRNLHSLKTLDLGDN 472
+ L L L L N
Sbjct: 284 DLFTPLRYLVELHLHHN 300
Score = 175 bits (446), Expect = 2e-47
Identities = 62/232 (26%), Positives = 104/232 (44%), Gaps = 17/232 (7%)
Query: 368 RLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNEL 427
+ L+L N I+ I +TF L +L L + N +++IE + + L +L+ L L +N L
Sbjct: 76 NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL 135
Query: 428 EYIEENALKNSTSLQDFHLNGNKLTEIPK-VLRNLHSLKTLDLGD-NLITEINNLSLNSL 485
I A + + L++ L N + IP + SL LDLG+ + I+ + L
Sbjct: 136 TVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGL 195
Query: 486 HQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNY 545
L L L NI ++ L L L ++ N ++ G+F S+L + + +
Sbjct: 196 FNLKYLNLGMCNIKDMPN--LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQ 253
Query: 546 LTDI-GGLFPKLPNLVWLNISENLLEWFDYALIPAD-------LQWLDIHGN 589
++ I F L +LV LN++ N L +P D L L +H N
Sbjct: 254 VSLIERNAFDGLASLVELNLAHNNLSS-----LPHDLFTPLRYLVELHLHHN 300
Score = 172 bits (438), Expect = 2e-46
Identities = 66/259 (25%), Positives = 109/259 (42%), Gaps = 42/259 (16%)
Query: 151 STMSLDISHNVFT-------DELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKL 203
+T L++ N L LE L L NSI + F L SL+ L L N L
Sbjct: 76 NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL 135
Query: 204 SNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQG-NILTFLAD 262
+ + + +F LR L L NN +S+P+ F+R+ L L L L ++++
Sbjct: 136 TVIPSGAFEYL------SKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISE 189
Query: 263 HALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVL 322
A +GL +L LNL + N+ ++P L L L
Sbjct: 190 GAFEGLFNLKYLNLGMCNIKDMPN--------------------------LTPLVGLEEL 223
Query: 323 DLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESI 382
++S N E + +F GL L L + ++++ ++ + F L L L+L +N + S+
Sbjct: 224 EMSGNHFPE--IRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSL 281
Query: 383 HRNTFASLSNLHTLIMSNN 401
+ F L L L + +N
Sbjct: 282 PHDLFTPLRYLVELHLHHN 300
Score = 160 bits (407), Expect = 2e-42
Identities = 61/229 (26%), Positives = 98/229 (42%), Gaps = 18/229 (7%)
Query: 101 SSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSL-DISH 159
+ +F+ L L+ L + I + G+F GL L TL L N L I
Sbjct: 88 QMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLEL-FDN------WLTVIPS 140
Query: 160 NVFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQ-NKLSNVATFSFSNYDTAR 218
F L L L L N I ++P F + SL L+L + KL ++ +F
Sbjct: 141 GAFEY-LSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLF--- 196
Query: 219 CGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSV 278
NL+ L+L + +P + L L+EL + GN + + GL+SL L +
Sbjct: 197 ---NLKYLNLGMCNIKDMPN--LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMN 251
Query: 279 NNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNN 327
+ + I F+ L E+ L +N+++ L +F L L+ L L +N
Sbjct: 252 SQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300
Score = 156 bits (395), Expect = 9e-41
Identities = 70/341 (20%), Positives = 127/341 (37%), Gaps = 74/341 (21%)
Query: 438 STSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENN 497
S L+E+P+ + + + L+L +N I I + LH L L+L N+
Sbjct: 53 SNQFSKVVCTRRGLSEVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS 110
Query: 498 ISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDI-GGLFPKL 556
I I G F L+ L L L N + + +G F+ S L + L N + I F ++
Sbjct: 111 IRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRV 170
Query: 557 PNLVWLNISE-NLLEWFDYALIPAD-------LQWLDIHGNQISELGNYFEIESQLRLTY 608
P+L+ L++ E LE+ I L++L++ I ++
Sbjct: 171 PSLMRLDLGELKKLEY-----ISEGAFEGLFNLKYLNLGMCNIKDM-------------- 211
Query: 609 FDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQT 668
LT L +E L ++ N +++P +F +L ++ ++ +++ I +
Sbjct: 212 -----PNLTPLV------GLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERN 260
Query: 669 AL--------------RISPLP-----SHKNIPDFYIGENPFQCDCNMQWLQSYSVNKER 709
A +S LP + + + ++ NP+ CDC++ WL R
Sbjct: 261 AFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDILWL----AWWLR 316
Query: 710 NKPNLVDLDTVTCKLLYNRANPAIL----LKEAHSNQFLCE 746
C P + L E F C
Sbjct: 317 EYIPTNSTCCGRC------HAPMHMRGRYLVEVDQASFQCS 351
Score = 147 bits (372), Expect = 9e-38
Identities = 59/208 (28%), Positives = 98/208 (47%), Gaps = 18/208 (8%)
Query: 101 SSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSL-DISH 159
+ G+F L L L + + + +G+F L KL+ L LR +N + I
Sbjct: 112 RQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLR-NN------PIESIPS 164
Query: 160 NVFTDELQSLESLDLS-MNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTAR 218
F + SL LDL + + + + F L +L YLNL + ++ +
Sbjct: 165 YAFNR-VPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLV----- 218
Query: 219 CGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSV 278
L L++S N F + F LS L++L++ + ++ + +A DGL SL LNL+
Sbjct: 219 ---GLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAH 275
Query: 279 NNLVNIPPELFNQSRDLKEVYLQNNSIN 306
NNL ++P +LF R L E++L +N N
Sbjct: 276 NNLSSLPHDLFTPLRYLVELHLHHNPWN 303
Score = 126 bits (318), Expect = 8e-31
Identities = 50/190 (26%), Positives = 78/190 (41%), Gaps = 8/190 (4%)
Query: 754 LCHCCDFDACDCEMTCPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGN 813
LC A CP+ C+C + + + C+ G ++P IP + L L N
Sbjct: 31 LCAAIAAAASAGPQNCPSVCSCS----NQFSKVVCTRRGLS-EVPQGIPSNTRYLNLMEN 85
Query: 814 RIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFER 873
I ++ + +F L++L L + + I FNGL L L L DN LT I FE
Sbjct: 86 NIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEY 145
Query: 874 LENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDH-NRITSFAVWHLS--SQIQSITLTS 930
L LREL+L+ N I I + F + L L L ++ + ++ + L
Sbjct: 146 LSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGM 205
Query: 931 NPWSCDCDFT 940
+ T
Sbjct: 206 CNIKDMPNLT 215
Score = 94.8 bits (236), Expect = 3e-20
Identities = 36/157 (22%), Positives = 62/157 (39%), Gaps = 26/157 (16%)
Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
L L I + + L+ L ++ +H I +F+GL L L + +++++
Sbjct: 199 KYLNLGMCNIKDM--PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSL 256
Query: 866 IRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSSQIQS 925
I F+ L +L EL L +N + + + F L +L L L H
Sbjct: 257 IERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHH----------------- 299
Query: 926 ITLTSNPWSCDCDFTEKFRDYLQRSRSSVHDISQIRC 962
NPW+CDCD +L+ + + RC
Sbjct: 300 -----NPWNCDCDILW-LAWWLREYIPT-NSTCCGRC 329
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 205 bits (524), Expect = 8e-58
Identities = 67/229 (29%), Positives = 107/229 (46%), Gaps = 5/229 (2%)
Query: 222 NLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNL 281
N R+L+L N + F L L+ L L N + + A +GL +L L L N L
Sbjct: 65 NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL 124
Query: 282 VNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLS-NNELTEEWVNAATFS 340
IP F LKE++L+NN I + FN + L LDL L+ ++ F
Sbjct: 125 TTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSY--ISEGAFE 182
Query: 341 GLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSN 400
GL L LN+A + ++ + L +L L L N + +I +F L +L L M
Sbjct: 183 GLSNLRYLNLAMCNLREIPN--LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQ 240
Query: 401 NKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGN 449
++++ IE N+ D+L +L ++L +N L + + L+ HL+ N
Sbjct: 241 SQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289
Score = 204 bits (520), Expect = 3e-57
Identities = 62/257 (24%), Positives = 108/257 (42%), Gaps = 9/257 (3%)
Query: 218 RCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLS 277
C + + +P + + L L N + + ++ L L +L LS
Sbjct: 40 SCSNQFSKVICVRKNLREVPDGISTNT---RLLNLHENQIQIIKVNSFKHLRHLEILQLS 96
Query: 278 VNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAA 337
N++ I FN +L + L +N + + G F L++L L L NN + + +
Sbjct: 97 RNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIES--IPSY 154
Query: 338 TFSGLHRLVVLNIA-YNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTL 396
F+ + L L++ +++ + F+ L L+ L+L + I L L L
Sbjct: 155 AFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP--NLTPLIKLDEL 212
Query: 397 IMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIP- 455
+S N L I S L L L + ++++ IE NA N SL + +L N LT +P
Sbjct: 213 DLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPH 272
Query: 456 KVLRNLHSLKTLDLGDN 472
+ LH L+ + L N
Sbjct: 273 DLFTPLHHLERIHLHHN 289
Score = 174 bits (442), Expect = 6e-47
Identities = 62/232 (26%), Positives = 105/232 (45%), Gaps = 17/232 (7%)
Query: 368 RLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNEL 427
++L+L NQI+ I N+F L +L L +S N ++ IE + + L L+ L L +N L
Sbjct: 65 NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL 124
Query: 428 EYIEENALKNSTSLQDFHLNGNKLTEIPK-VLRNLHSLKTLDLGD-NLITEINNLSLNSL 485
I A + L++ L N + IP + SL+ LDLG+ ++ I+ + L
Sbjct: 125 TTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGL 184
Query: 486 HQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNY 545
L L L N+ I L L L+L+ N + + G+F +L + + +
Sbjct: 185 SNLRYLNLAMCNLREIPN--LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQ 242
Query: 546 LTDI-GGLFPKLPNLVWLNISENLLEWFDYALIPAD-------LQWLDIHGN 589
+ I F L +LV +N++ N L +P D L+ + +H N
Sbjct: 243 IQVIERNAFDNLQSLVEINLAHNNLTL-----LPHDLFTPLHHLERIHLHHN 289
Score = 173 bits (439), Expect = 1e-46
Identities = 66/259 (25%), Positives = 116/259 (44%), Gaps = 42/259 (16%)
Query: 151 STMSLDISHNVFT-------DELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKL 203
+T L++ N L+ LE L LS N I T+ F L +L+ L L N+L
Sbjct: 65 NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL 124
Query: 204 SNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQG-NILTFLAD 262
+ + +F L+ L L NN +S+P+ F+R+ L+ L L L+++++
Sbjct: 125 TTIPNGAFVYL------SKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISE 178
Query: 263 HALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVL 322
A +GL++L LNL++ NL IP L +L L
Sbjct: 179 GAFEGLSNLRYLNLAMCNLREIPN--------------------------LTPLIKLDEL 212
Query: 323 DLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESI 382
DLS N L+ + +F GL L L + +++ ++ + F +L L ++L +N + +
Sbjct: 213 DLSGNHLS--AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLL 270
Query: 383 HRNTFASLSNLHTLIMSNN 401
+ F L +L + + +N
Sbjct: 271 PHDLFTPLHHLERIHLHHN 289
Score = 162 bits (411), Expect = 6e-43
Identities = 63/229 (27%), Positives = 102/229 (44%), Gaps = 18/229 (7%)
Query: 101 SSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSL-DISH 159
+ SF+ L L+ L + I + G+F GL L TL L N L I +
Sbjct: 77 QIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLEL-FDN------RLTTIPN 129
Query: 160 NVFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQ-NKLSNVATFSFSNYDTAR 218
F L L+ L L N I ++P F + SL L+L + +LS ++ +F
Sbjct: 130 GAFVY-LSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLS--- 185
Query: 219 CGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSV 278
NLR L+L+ + +P + L +L EL L GN L+ + + GL L L +
Sbjct: 186 ---NLRYLNLAMCNLREIPN--LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQ 240
Query: 279 NNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNN 327
+ + I F+ + L E+ L +N++ +L +F L L + L +N
Sbjct: 241 SQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289
Score = 154 bits (390), Expect = 3e-40
Identities = 67/334 (20%), Positives = 124/334 (37%), Gaps = 60/334 (17%)
Query: 438 STSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENN 497
S L E+P + + + L+L +N I I S L L L+L+ N+
Sbjct: 42 SNQFSKVICVRKNLREVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH 99
Query: 498 ISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDI-GGLFPKL 556
I I G F L+ L L L N++ + G F S L + L N + I F ++
Sbjct: 100 IRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRI 159
Query: 557 PNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNY-FEIESQLRLTYFDASSNK 615
P+L L++ E ++S + FE L Y + +
Sbjct: 160 PSLRRLDLGEL---------------------KRLSYISEGAFE--GLSNLRYLNLAMCN 196
Query: 616 LTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTAL----- 670
L E+ ++ L L+ N +S ++P +F +L ++ ++ ++++ I + A
Sbjct: 197 LREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQS 256
Query: 671 ---------RISPLP-----SHKNIPDFYIGENPFQCDCNMQWLQSYSVNKERNKPNLVD 716
++ LP ++ ++ NP+ C+C++ WL + ++
Sbjct: 257 LVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDILWLSWWI----KDMAPSNT 312
Query: 717 LDTVTCKLLYNRANPAIL----LKEAHSNQFLCE 746
C P L + E N F C
Sbjct: 313 ACCARC------NTPPNLKGRYIGELDQNYFTCY 340
Score = 146 bits (370), Expect = 1e-37
Identities = 59/208 (28%), Positives = 95/208 (45%), Gaps = 18/208 (8%)
Query: 101 SSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSL-DISH 159
++ G+F L +L L + ++ + G+F L KLK L LR +N + I
Sbjct: 101 RTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLR-NN------PIESIPS 153
Query: 160 NVFTDELQSLESLDLS-MNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTAR 218
F + SL LDL + + + + F L +L YLNL L + +
Sbjct: 154 YAFNR-IPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPL------ 206
Query: 219 CGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSV 278
I L LDLS N ++ F L LQ+L++ + + + +A D L SL +NL+
Sbjct: 207 --IKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAH 264
Query: 279 NNLVNIPPELFNQSRDLKEVYLQNNSIN 306
NNL +P +LF L+ ++L +N N
Sbjct: 265 NNLTLLPHDLFTPLHHLERIHLHHNPWN 292
Score = 121 bits (305), Expect = 3e-29
Identities = 50/170 (29%), Positives = 80/170 (47%), Gaps = 8/170 (4%)
Query: 765 CEMTCPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFI 824
TCP+ C+C + + + + C ++P I + L L N+I ++ +SF
Sbjct: 31 SAQTCPSVCSCSN----QFSKVICVRKNLR-EVPDGISTNTRLLNLHENQIQIIKVNSFK 85
Query: 825 GRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQY 884
+ L+IL L+ +H+ TI FNGL L L L DNRLT I F L L+EL+L+
Sbjct: 86 HLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRN 145
Query: 885 NKIIYISNRTFLSLTHLKVLQLDH-NRITSFAVWHLS--SQIQSITLTSN 931
N I I + F + L+ L L R++ + S ++ + L
Sbjct: 146 NPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC 195
Score = 102 bits (257), Expect = 4e-23
Identities = 48/208 (23%), Positives = 73/208 (35%), Gaps = 55/208 (26%)
Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDD-NRLT 864
L L NR+ + + +F+ KL+ L+L ++ +E+I + FN + L L L + RL+
Sbjct: 115 NTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLS 174
Query: 865 EIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSF---AVWHLSS 921
I FE L NLR L L + I L L L L N +++ + L
Sbjct: 175 YISEGAFEGLSNLRYLNLAMCNLREIP--NLTPLIKLDELDLSGNHLSAIRPGSFQGLMH 232
Query: 922 ---------QIQSI--------------------------------------TLTSNPWS 934
QIQ I L NPW+
Sbjct: 233 LQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292
Query: 935 CDCDFTEKFRDYLQRSRSSVHDISQIRC 962
C+CD +++ S RC
Sbjct: 293 CNCDILW-LSWWIKDMAPSNTAC-CARC 318
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis,
effector protein, virulence factor, toxin; 2.10A
{Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Length = 454
Score = 205 bits (523), Expect = 2e-57
Identities = 96/505 (19%), Positives = 193/505 (38%), Gaps = 68/505 (13%)
Query: 165 ELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCG---- 220
L+ +++ +P ++S + ++ A
Sbjct: 9 SNTFLQEPLRHSSNLTEMPVEAEN-VKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRD 67
Query: 221 ---INLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLS 277
L+L+N SLP L+ L N LT L L SL V N +
Sbjct: 68 CLDRQAHELELNNLGLSSLPEL----PPHLESLVASCNSLTEL-PELPQSLKSLLVDNNN 122
Query: 278 VNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAA 337
+ L ++PP L + + + NN + L P + N + L ++D+ NN L +
Sbjct: 123 LKALSDLPPLL-------EYLGVSNNQLEKL-PELQN-SSFLKIIDVDNNSLKK------ 167
Query: 338 TFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLI 397
L + N++ +L ++L L ++ +NN ++ + +L +++
Sbjct: 168 LPDLPPSLEFIAAGNNQLEELPE--LQNLPFLTAIYADNNSLKKL----PDLPLSLESIV 221
Query: 398 MSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKV 457
NN L+ + L +L L+ + DNN L+ + + SL+ ++ N LT++P++
Sbjct: 222 AGNNILEEL--PELQNLPFLTTIYADNNLLKTLPDLP----PSLEALNVRDNYLTDLPEL 275
Query: 458 LRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNL 517
++L L + + ++E+ L L + N I ++ + L LN+
Sbjct: 276 PQSLTFLDVSENIFSGLSEL-------PPNLYYLNASSNEIRSLC----DLPPSLEELNV 324
Query: 518 ASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYALI 577
++NK+ ++ A L + N+L ++ NL L++ N L F I
Sbjct: 325 SNNKLIELPA----LPPRLERLIASFNHLAEVP---ELPQNLKQLHVEYNPLREFPD--I 375
Query: 578 PADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPHSVENLFLTNNL 637
P ++ L ++ + ++E+ + L +N L E IP SVE+L + +
Sbjct: 376 PESVEDLRMN-SHLAEVPELPQ-----NLKQLHVETNPLREFP--DIPESVEDLRMNSER 427
Query: 638 ISKVQPYTFFMKPNLTRVDLVGNRL 662
+ + L +
Sbjct: 428 VVDPYEFAHETTDKLEDDVFEHHHH 452
Score = 174 bits (444), Expect = 5e-47
Identities = 87/477 (18%), Positives = 170/477 (35%), Gaps = 68/477 (14%)
Query: 105 PGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHNVFT- 163
P + + + + + + R++ LR D L++++ +
Sbjct: 27 PVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLR-DCLDRQAHELELNNLGLSS 85
Query: 164 --DELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGI 221
+ LESL S NS+ LP+ L+SL N LS++
Sbjct: 86 LPELPPHLESLVASCNSLTELPELPQS-LKSLLVDNNNLKALSDLPP------------- 131
Query: 222 NLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNL 281
L L +SNN + LP S L+ + + N L L D SL + N L
Sbjct: 132 LLEYLGVSNNQLEKLPE--LQNSSFLKIIDVDNNSLKKL----PDLPPSLEFIAAGNNQL 185
Query: 282 VNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSG 341
+P L +Y NNS+ L ++ L + NN L E
Sbjct: 186 EELPE--LQNLPFLTAIYADNNSLKKL----PDLPLSLESIVAGNNILEE----LPELQN 235
Query: 342 LHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNN 401
L L + N + L L+ L++ +N + + +L L +S N
Sbjct: 236 LPFLTTIYADNNLLKTLPDLPPS----LEALNVRDNYLTDLP----ELPQSLTFLDVSEN 287
Query: 402 KLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNL 461
+ L L+ +NE+ + + SL++ +++ NKL E+P
Sbjct: 288 IFSGLSE----LPPNLYYLNASSNEIRSLCD----LPPSLEELNVSNNKLIELPA---LP 336
Query: 462 HSLKTLDLGDNLITEIN---------NLSLNSLHQLAGL--RLTENNISNISKGVFEKLS 510
L+ L N + E+ ++ N L + + + + +++ V E
Sbjct: 337 PRLERLIASFNHLAEVPELPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQ 396
Query: 511 VLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISEN 567
L L++ +N +++ D ++ +R++ + D + + + ++ E+
Sbjct: 397 NLKQLHVETNPLREFP----DIPESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEH 449
Score = 162 bits (413), Expect = 5e-43
Identities = 75/386 (19%), Positives = 134/386 (34%), Gaps = 70/386 (18%)
Query: 155 LDISHNVFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNY 214
+ + +D LE L +S N + LP+ L +++ N L +
Sbjct: 119 DNNNLKALSDLPPLLEYLGVSNNQLEKLPE--LQNSSFLKIIDVDNNSLKKLPDLPP--- 173
Query: 215 DTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADH----------- 263
+L + NN + LP L L +Y N L L D
Sbjct: 174 -------SLEFIAAGNNQLEELPE--LQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGN 224
Query: 264 -------ALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVL 316
L L LT + N L +P + L+ + +++N + L + L
Sbjct: 225 NILEELPELQNLPFLTTIYADNNLLKTLPDLPPS----LEALNVRDNYLTDLPELPQS-L 279
Query: 317 TQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLEN 376
T L V + + L+E L LN + N++ S+ L+ L++ N
Sbjct: 280 TFLDVSENIFSGLSEL---------PPNLYYLNASSNEIR----SLCDLPPSLEELNVSN 326
Query: 377 NQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALK 436
N++ + A L LI S N L + L L ++ N L +
Sbjct: 327 NKLIEL----PALPPRLERLIASFNHLAEVPE----LPQNLKQLHVEYNPLREFPD---- 374
Query: 437 NSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTEN 496
S++D +N + L E+P++ +N LK L + N + E ++ + LR+
Sbjct: 375 IPESVEDLRMN-SHLAEVPELPQN---LKQLHVETNPLREFPDI----PESVEDLRMNSE 426
Query: 497 NISNISKGVFEKLSVLTILNLASNKI 522
+ + + E L +
Sbjct: 427 RVVDPYEFAHETTDKLEDDVFEHHHH 452
Score = 158 bits (401), Expect = 2e-41
Identities = 70/367 (19%), Positives = 130/367 (35%), Gaps = 67/367 (18%)
Query: 154 SLDISHNVFTD-----ELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVAT 208
L +S+N L+ +D+ NS+ LPD SL ++ N+L +
Sbjct: 135 YLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDL----PPSLEFIAAGNNQLEELPE 190
Query: 209 FSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGL 268
L + NNS LP L+ + NIL L + L L
Sbjct: 191 LQNLP--------FLTAIYADNNSLKKLPDL----PLSLESIVAGNNILEELPE--LQNL 236
Query: 269 NSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNE 328
LT + N L +P + L+ + +++N + L + LT L V + +
Sbjct: 237 PFLTTIYADNNLLKTLPDLPPS----LEALNVRDNYLTDLPELPQS-LTFLDVSENIFSG 291
Query: 329 LTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFA 388
L+E L LN + N++ S+ L+ L++ NN++ + A
Sbjct: 292 LSEL---------PPNLYYLNASSNEIR----SLCDLPPSLEELNVSNNKLIEL----PA 334
Query: 389 SLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEE--NALKN--------- 437
L LI S N L + L L ++ N L + ++++
Sbjct: 335 LPPRLERLIASFNHLAEVPE----LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAE 390
Query: 438 ----STSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRL 493
+L+ H+ N L E P + S++ L + + + + + +L
Sbjct: 391 VPELPQNLKQLHVETNPLREFPDIP---ESVEDLRMNSERVVDPYEFAHETTDKLEDDVF 447
Query: 494 TENNISN 500
++ +
Sbjct: 448 EHHHHHH 454
Score = 151 bits (383), Expect = 4e-39
Identities = 87/422 (20%), Positives = 165/422 (39%), Gaps = 59/422 (13%)
Query: 244 LSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNN 303
+ LQE + LT + + + S T + + P + R++ L++
Sbjct: 10 NTFLQEPLRHSSNLTEM-PVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDC 68
Query: 304 SINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIF 363
+ Q L+L+N L+ L L + N + +L
Sbjct: 69 -----------LDRQAHELELNNLGLSS------LPELPPHLESLVASCNSLTELPELPQ 111
Query: 364 KDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLD 423
L L V + + + L L +SNN+L+++ L + + L ++ +D
Sbjct: 112 S-LKSLLVDNNNLKALSDL-------PPLLEYLGVSNNQLEKLPE--LQNSSFLKIIDVD 161
Query: 424 NNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLN 483
NN L+ + + SL+ N+L E+P+ L+NL L + +N + ++ +
Sbjct: 162 NNSLKKLPDL----PPSLEFIAAGNNQLEELPE-LQNLPFLTAIYADNNSLKKLPD---- 212
Query: 484 SLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDG 543
L + N + + + L LT + +N ++ + D +L A+ +
Sbjct: 213 LPLSLESIVAGNNILEELP--ELQNLPFLTTIYADNNLLKTL----PDLPPSLEALNVRD 266
Query: 544 NYLTDIGGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQ 603
NYLTD+ L L L + L +P +L +L+ N+I L +
Sbjct: 267 NYLTDLPELPQSLTFLDVSENIFSGLS-----ELPPNLYYLNASSNEIRSL-----CDLP 316
Query: 604 LRLTYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLK 663
L + S+NKL EL A+P +E L + N +++V P NL ++ + N L+
Sbjct: 317 PSLEELNVSNNKLIELP--ALPPRLERLIASFNHLAEV-PELP---QNLKQLHVEYNPLR 370
Query: 664 NI 665
Sbjct: 371 EF 372
Score = 145 bits (369), Expect = 3e-37
Identities = 85/399 (21%), Positives = 150/399 (37%), Gaps = 55/399 (13%)
Query: 267 GLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSN 326
L +NL +P E N + E Y + AP ++ V L +
Sbjct: 9 SNTFLQEPLRHSSNLTEMPVEAEN-VKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRD 67
Query: 327 NELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNT 386
+ L + ++ L L+ L N + +
Sbjct: 68 CLDR-------------QAHELELNNLGLSSLPELPPH----LESLVASCNSLTELP--- 107
Query: 387 FASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHL 446
+L +L++ NN LK + L L + NN+LE + E L+NS+ L+ +
Sbjct: 108 -ELPQSLKSLLVDNNNLKALSDL----PPLLEYLGVSNNQLEKLPE--LQNSSFLKIIDV 160
Query: 447 NGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVF 506
+ N L ++P + +L + + G+N + E+ L +L L + N++ +
Sbjct: 161 DNNSLKKLPDLPPSL---EFIAAGNNQLEELPELQ--NLPFLTAIYADNNSLKKL----P 211
Query: 507 EKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISE 566
+ L + +N ++++ N L I D N L L P+L LN+ +
Sbjct: 212 DLPLSLESIVAGNNILEELP--ELQNLPFLTTIYADNNLLKT---LPDLPPSLEALNVRD 266
Query: 567 NLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPH 626
N L +P L +LD+ N S L L Y +ASSN++ L P
Sbjct: 267 NYLTDLP--ELPQSLTFLDVSENIFSGLSELPP-----NLYYLNASSNEIRSLCDL--PP 317
Query: 627 SVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNI 665
S+E L ++NN + ++ P L R+ N L +
Sbjct: 318 SLEELNVSNNKLIELPALP----PRLERLIASFNHLAEV 352
Score = 75.0 bits (185), Expect = 5e-14
Identities = 39/216 (18%), Positives = 71/216 (32%), Gaps = 44/216 (20%)
Query: 114 LKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTM-----SLDISHNVFT---DE 165
L+ L+V + +L + L L + S + L+ S N D
Sbjct: 259 LEALNVRDNYLTDLPE-LPQSLTFLDVSEN--IFSGLSELPPNLYYLNASSNEIRSLCDL 315
Query: 166 LQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRV 225
SLE L++S N + LP L L + N L+ V NL+
Sbjct: 316 PPSLEELNVSNNKLIELPALP----PRLERLIASFNHLAEVPELPQ----------NLKQ 361
Query: 226 LDLSNNSFDSLPAEGFS---------------RLSRLQELYLQGNILTFLADHALDGLNS 270
L + N P S L++L+++ N L D S
Sbjct: 362 LHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPD----IPES 417
Query: 271 LTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSIN 306
+ L ++ +V+ + L++ +++ +
Sbjct: 418 VEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453
Score = 54.6 bits (132), Expect = 1e-07
Identities = 19/139 (13%), Positives = 50/139 (35%), Gaps = 13/139 (9%)
Query: 793 YDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKE 852
L +P L + N++ + L+I+ ++++ ++ + +
Sbjct: 122 NLKALS-DLPPLLEYLGVSNNQLEKLPE--LQNSSFLKIIDVDNNSLKKL----PDLPPS 174
Query: 853 LIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRIT 912
L + +N+L E+ E + L L +Y N + + + L+ + +N +
Sbjct: 175 LEFIAAGNNQLEELP--ELQNLPFLTAIYADNNSLKKLPD----LPLSLESIVAGNNILE 228
Query: 913 SFAVWHLSSQIQSITLTSN 931
+ +I +N
Sbjct: 229 ELPELQNLPFLTTIYADNN 247
Score = 54.2 bits (131), Expect = 2e-07
Identities = 17/126 (13%), Positives = 45/126 (35%), Gaps = 14/126 (11%)
Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
+ N++ + L ++ +++ ++ + + L + +N L E
Sbjct: 176 EFIAAGNNQLEEL--PELQNLPFLTAIYADNNSLKKL----PDLPLSLESIVAGNNILEE 229
Query: 866 IRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSSQIQS 925
+ E + L L +Y N + + + L+ L + N +T L +
Sbjct: 230 LP--ELQNLPFLTTIYADNNLLKTLPD----LPPSLEALNVRDNYLTDLP--ELPQSLTF 281
Query: 926 ITLTSN 931
+ ++ N
Sbjct: 282 LDVSEN 287
Score = 44.6 bits (106), Expect = 2e-04
Identities = 24/124 (19%), Positives = 45/124 (36%), Gaps = 18/124 (14%)
Query: 793 YDNQLP--PRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGL 850
DN L P +P T L + N + L L +S+ + ++ +
Sbjct: 265 RDNYLTDLPELPQSLTFLDVSENIFSGLSELP----PNLYYLNASSNEIRSL----CDLP 316
Query: 851 KELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNR 910
L L + +N+L E+ L L +N + + +LK L +++N
Sbjct: 317 PSLEELNVSNNKLIEL----PALPPRLERLIASFNHLAEVPE----LPQNLKQLHVEYNP 368
Query: 911 ITSF 914
+ F
Sbjct: 369 LREF 372
Score = 42.7 bits (101), Expect = 7e-04
Identities = 13/97 (13%), Positives = 28/97 (28%), Gaps = 6/97 (6%)
Query: 114 LKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWST--MSLDISHNVFT---DELQS 168
LK L VE+ + + L+ + + L + N D +S
Sbjct: 359 LKQLHVEYNPLREFPD-IPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPES 417
Query: 169 LESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSN 205
+E L ++ + + L + +
Sbjct: 418 VEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHHH 454
Score = 40.0 bits (94), Expect = 0.004
Identities = 23/131 (17%), Positives = 47/131 (35%), Gaps = 27/131 (20%)
Query: 799 PRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRL 858
+P + L N I + L+ L ++++ + + L L
Sbjct: 293 SELPPNLYYLNASSNEIRSLCDLP----PSLEELNVSNNKLIEL----PALPPRLERLIA 344
Query: 859 DDNRLTEIRGYEFERLENLRELYLQYNKIIYI-------------SNRTFL--SLTHLKV 903
N L E+ E +NL++L+++YN + S+ + +LK
Sbjct: 345 SFNHLAEVP----ELPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQ 400
Query: 904 LQLDHNRITSF 914
L ++ N + F
Sbjct: 401 LHVETNPLREF 411
Score = 40.0 bits (94), Expect = 0.005
Identities = 14/107 (13%), Positives = 38/107 (35%), Gaps = 13/107 (12%)
Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
+L+++ N + ++ L +NS + + L L ++ N L E
Sbjct: 360 KQLHVEYNPLREF--PDIPE--SVEDLRMNSHL-----AEVPELPQNLKQLHVETNPLRE 410
Query: 866 IRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRIT 912
+ E++ +L + +++ + L+ +H+
Sbjct: 411 F----PDIPESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453
Score = 39.2 bits (92), Expect = 0.008
Identities = 18/124 (14%), Positives = 46/124 (37%), Gaps = 27/124 (21%)
Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
EL + N++ + + +L+ L + +H+ + + L L ++ N L E
Sbjct: 320 EELNVSNNKLIEL--PALPP--RLERLIASFNHLAEVPE----LPQNLKQLHVEYNPLRE 371
Query: 866 I---------------RGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNR 910
E +NL++L+++ N + + ++ L+++ R
Sbjct: 372 FPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPD----IPESVEDLRMNSER 427
Query: 911 ITSF 914
+
Sbjct: 428 VVDP 431
Score = 36.9 bits (86), Expect = 0.037
Identities = 13/104 (12%), Positives = 24/104 (23%), Gaps = 18/104 (17%)
Query: 824 IGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERL--------- 874
+ LQ +SS++ + +K +
Sbjct: 8 VSNTFLQEPLRHSSNLTEM-PVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLR 66
Query: 875 ----ENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSF 914
EL L + + HL+ L N +T
Sbjct: 67 DCLDRQAHELELNNLGLSSLPE----LPPHLESLVASCNSLTEL 106
Score = 36.9 bits (86), Expect = 0.041
Identities = 15/103 (14%), Positives = 34/103 (33%), Gaps = 20/103 (19%)
Query: 827 KKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNK 886
++ L LN+ + ++ L L N LTE+ + L++L
Sbjct: 71 RQAHELELNNLGLSSLPEL----PPHLESLVASCNSLTELPE-LPQSLKSLLVDNNNLKA 125
Query: 887 IIYISNR---------------TFLSLTHLKVLQLDHNRITSF 914
+ + + + LK++ +D+N +
Sbjct: 126 LSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKL 168
Score = 34.2 bits (79), Expect = 0.29
Identities = 12/80 (15%), Positives = 27/80 (33%), Gaps = 2/80 (2%)
Query: 848 NGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLD 907
L + LTE+ E E +++ E Y +++ + + V +L
Sbjct: 8 VSNTFLQEPLRHSSNLTEMPV-EAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLR 66
Query: 908 HNRITSFAVWHLSS-QIQSI 926
L++ + S+
Sbjct: 67 DCLDRQAHELELNNLGLSSL 86
>4fmz_A Internalin; leucine rich repeat, structural genomic center for
structural genomics, JCSG, protein structure INI
PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes
serotype 4B}
Length = 347
Score = 201 bits (514), Expect = 2e-57
Identities = 88/404 (21%), Positives = 165/404 (40%), Gaps = 58/404 (14%)
Query: 190 LQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQE 249
+L+ L N++ A + L S + L + +
Sbjct: 2 AATLATLPAPINQIFPDADLA-----------EGIRAVLQKASVTDVV--TQEELESITK 48
Query: 250 LYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLA 309
L + G + + ++ L +L LNL+ N + +I P + L +Y+ N I ++
Sbjct: 49 LVVAGEKVASIQ--GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDIS 104
Query: 310 PGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRL 369
LT L L L+ + ++ + + + L ++ LN+ N S + + L
Sbjct: 105 A--LQNLTNLRELYLNEDNIS----DISPLANLTKMYSLNLGANHNLSDLSPLSN-MTGL 157
Query: 370 QVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEY 429
L + ++++ + A+L++L++L ++ N+++ I L SLT+L + N++
Sbjct: 158 NYLTVTESKVKDV--TPIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITD 213
Query: 430 IEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLA 489
I + N T L + NK+T++ L NL L L++G N I++IN + L +L
Sbjct: 214 IT--PVANMTRLNSLKIGNNKITDLS-PLANLSQLTWLEIGTNQISDINAVK--DLTKLK 268
Query: 490 GLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDI 549
L + N IS+IS V LS L L L +N++ + +NL + L N++TDI
Sbjct: 269 MLNVGSNQISDIS--VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDI 326
Query: 550 GGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISE 593
L L + D I +
Sbjct: 327 RPL-ASLSKM----------------------DSADFANQVIKK 347
Score = 196 bits (501), Expect = 9e-56
Identities = 87/387 (22%), Positives = 165/387 (42%), Gaps = 43/387 (11%)
Query: 114 LKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHNVFTDELQSLESLD 173
L+ I + + L + L+ + ++ V +EL+S+ L
Sbjct: 2 AATLATLPAPINQIFPDA--DLAEGIRAVLQKAS---------VTDVVTQEELESITKLV 50
Query: 174 LSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSF 233
++ + ++ L +L YLNL N++++++ S L L + N
Sbjct: 51 VAGEKVASIQG--IEYLTNLEYLNLNGNQITDISPLSNLV--------KLTNLYIGTNKI 100
Query: 234 DSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSR 293
+ A L+ L+ELYL + ++ ++ L L + LNL N+ ++ L N +
Sbjct: 101 TDISA--LQNLTNLRELYLNEDNISDIS--PLANLTKMYSLNLGANHNLSDLSPLSNMTG 156
Query: 294 DLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYN 353
L + + + + + P LT L L L+ N++ + + + L L N
Sbjct: 157 -LNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIE----DISPLASLTSLHYFTAYVN 209
Query: 354 KMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDS 413
++ + ++ RL L + NN+I + + A+LS L L + N++ I ++
Sbjct: 210 QITDITP--VANMTRLNSLKIGNNKITDL--SPLANLSQLTWLEIGTNQISDIN--AVKD 263
Query: 414 LTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLT-EIPKVLRNLHSLKTLDLGDN 472
LT L +L++ +N++ I L N + L LN N+L E +V+ L +L TL L N
Sbjct: 264 LTKLKMLNVGSNQISDIS--VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQN 321
Query: 473 LITEINNLSLNSLHQLAGLRLTENNIS 499
IT+I L+ SL ++ I
Sbjct: 322 HITDIRPLA--SLSKMDSADFANQVIK 346
Score = 191 bits (487), Expect = 8e-54
Identities = 84/371 (22%), Positives = 150/371 (40%), Gaps = 28/371 (7%)
Query: 295 LKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNK 354
+ IN + P L + I L +T+ T L + L +A K
Sbjct: 2 AATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDV----VTQEELESITKLVVAGEK 55
Query: 355 MNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSL 414
+ + + L L+ L+L NQI I + ++L L L + NK+ I + L +L
Sbjct: 56 VASIQG--IEYLTNLEYLNLNGNQITDI--SPLSNLVKLTNLYIGTNKITDISA--LQNL 109
Query: 415 TALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLI 474
T L L L+ + + I L N T + +L N L N+ L L + ++ +
Sbjct: 110 TNLRELYLNEDNISDIS--PLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKV 167
Query: 475 TEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNS 534
++ ++ +L L L L N I +IS L+ L N+I + N +
Sbjct: 168 KDVTPIA--NLTDLYSLSLNYNQIEDIS--PLASLTSLHYFTAYVNQITDITP--VANMT 221
Query: 535 NLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISEL 594
L ++++ N +TD+ L L L WL I N + + L+ L++ NQIS++
Sbjct: 222 RLNSLKIGNNKITDLSPLA-NLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDI 280
Query: 595 GNYFEIESQLRLTYFDASSNKLTELTGNAIPH--SVENLFLTNNLISKVQPYTFFMKPNL 652
+ + +L ++N+L I ++ LFL+ N I+ ++P +
Sbjct: 281 SV---LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKM 335
Query: 653 TRVDLVGNRLK 663
D +K
Sbjct: 336 DSADFANQVIK 346
Score = 167 bits (426), Expect = 1e-45
Identities = 70/356 (19%), Positives = 145/356 (40%), Gaps = 42/356 (11%)
Query: 111 LIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHN-TDWSTMS-------LDISHNVF 162
L + ++ + ++ + L + L + + L+++ N
Sbjct: 21 LAEGIRAVLQKASVTDVV--TQEELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQI 78
Query: 163 TD-----ELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTA 217
TD L L +L + N I + L +L L L ++ +S+++ +
Sbjct: 79 TDISPLSNLVKLTNLYIGTNKITDISA--LQNLTNLRELYLNEDNISDISPLANLT---- 132
Query: 218 RCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLS 277
+ L+L N S S ++ L L + + + + + L L L+L+
Sbjct: 133 ----KMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVT--PIANLTDLYSLSLN 185
Query: 278 VNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAA 337
N + +I P L N I + P +T+L L + NN++T + +
Sbjct: 186 YNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKIT----DLS 237
Query: 338 TFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLI 397
+ L +L L I N+++ +++ KDL +L++L++ +NQI I + +LS L++L
Sbjct: 238 PLANLSQLTWLEIGTNQISDINA--VKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLF 293
Query: 398 MSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTE 453
++NN+L + + LT L+ L L N + I L + + + + +
Sbjct: 294 LNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIR--PLASLSKMDSADFANQVIKK 347
Score = 151 bits (385), Expect = 2e-40
Identities = 61/312 (19%), Positives = 128/312 (41%), Gaps = 38/312 (12%)
Query: 107 SFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLR----THNTDWSTMS----LDIS 158
+ L +L+ L++ +I ++S L KL L + T + ++ L ++
Sbjct: 61 GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDISALQNLTNLRELYLN 118
Query: 159 HNVFTD-----ELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSN 213
+ +D L + SL+L N + + + L+YL +T++K+ +V +
Sbjct: 119 EDNISDISPLANLTKMYSLNLGANHNLSDLSPL-SNMTGLNYLTVTESKVKDVTPIANL- 176
Query: 214 YDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTV 273
+L L L+ N + + + L+ L N +T + + + L
Sbjct: 177 -------TDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDIT--PVANMTRLNS 225
Query: 274 LNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEW 333
L + N + ++ P L + + N I+ + LT+L +L++ +N+++
Sbjct: 226 LKIGNNKITDLSP--LANLSQLTWLEIGTNQISDINA--VKDLTKLKMLNVGSNQIS--- 278
Query: 334 VNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNL 393
+ + + L +L L + N++ D + L L L L N I I ASLS +
Sbjct: 279 -DISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDI--RPLASLSKM 335
Query: 394 HTLIMSNNKLKR 405
+ +N +K+
Sbjct: 336 DSADFANQVIKK 347
Score = 94.9 bits (237), Expect = 5e-21
Identities = 47/215 (21%), Positives = 82/215 (38%), Gaps = 31/215 (14%)
Query: 105 PGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHN--TDWSTMS-------L 155
+ L L+V K+ +++ L L +L+L +N D S ++
Sbjct: 148 LSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLN-YNQIEDISPLASLTSLHYF 204
Query: 156 DISHNVFTD-----ELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFS 210
N TD + L SL + N I L L L++L + N++S++
Sbjct: 205 TAYVNQITDITPVANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDINAVK 262
Query: 211 FSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNS 270
L++L++ +N + + LS+L L+L N L + GL +
Sbjct: 263 DLT--------KLKMLNVGSNQISDISV--LNNLSQLNSLFLNNNQLGNEDMEVIGGLTN 312
Query: 271 LTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSI 305
LT L LS N++ +I P + N I
Sbjct: 313 LTTLFLSQNHITDIRP--LASLSKMDSADFANQVI 345
Score = 78.4 bits (194), Expect = 2e-15
Identities = 34/202 (16%), Positives = 77/202 (38%), Gaps = 33/202 (16%)
Query: 464 LKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQ 523
TL I +I + L + L + +++++ E+L +T L +A K+
Sbjct: 2 AATLATLPAPINQIFPDA--DLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA 57
Query: 524 KVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYALIPADLQW 583
++ + +NL + L+GN +TDI L L L L I N + +L+
Sbjct: 58 SIQG--IEYLTNLEYLNLNGNQITDISPLS-NLVKLTNLYIGTNKITDISALQNLTNLRE 114
Query: 584 LDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQP 643
L ++ + IS++ + + ++ + +N + N+
Sbjct: 115 LYLNEDNISDISP---LANLTKMYSLNLGANHNLS-----DLSPLSNM------------ 154
Query: 644 YTFFMKPNLTRVDLVGNRLKNI 665
L + + +++K++
Sbjct: 155 ------TGLNYLTVTESKVKDV 170
Score = 66.4 bits (163), Expect = 1e-11
Identities = 27/107 (25%), Positives = 45/107 (42%), Gaps = 6/107 (5%)
Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
T L + N+I + ++ KL++L + S+ + I N L +L L L++N+L
Sbjct: 246 TWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDISV--LNNLSQLNSLFLNNNQLGN 301
Query: 866 IRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRIT 912
L NL L+L N I I SL+ + + I
Sbjct: 302 EDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346
Score = 66.0 bits (162), Expect = 2e-11
Identities = 26/127 (20%), Positives = 47/127 (37%), Gaps = 6/127 (4%)
Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
L + N+I +L L + ++ + I L +L +L + N++++
Sbjct: 224 NSLKIGNNKI--TDLSPLANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISD 279
Query: 866 IRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSSQIQS 925
I L L L+L N++ LT+L L L N IT S++ S
Sbjct: 280 IS--VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASLSKMDS 337
Query: 926 ITLTSNP 932
+
Sbjct: 338 ADFANQV 344
Score = 66.0 bits (162), Expect = 2e-11
Identities = 25/126 (19%), Positives = 49/126 (38%), Gaps = 8/126 (6%)
Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
L + +++ L L LN + +E I L L N++T+
Sbjct: 158 NYLTVTESKV--KDVTPIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITD 213
Query: 866 IRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSSQIQS 925
I + L L + NKI +S +L+ L L++ N+I+ ++++
Sbjct: 214 ITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDINAVKDLTKLKM 269
Query: 926 ITLTSN 931
+ + SN
Sbjct: 270 LNVGSN 275
Score = 59.9 bits (146), Expect = 2e-09
Identities = 26/126 (20%), Positives = 47/126 (37%), Gaps = 8/126 (6%)
Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
L I + + + L + V + T L+ + L + ++
Sbjct: 3 ATLATLPAPINQIFPDA--DLAEGIRAVLQKASVTDV--VTQEELESITKLVVAGEKVAS 58
Query: 866 IRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSSQIQS 925
I+G E L NL L L N+I IS +L L L + N+IT + + ++
Sbjct: 59 IQG--IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDISALQNLTNLRE 114
Query: 926 ITLTSN 931
+ L +
Sbjct: 115 LYLNED 120
Score = 58.3 bits (142), Expect = 6e-09
Identities = 27/127 (21%), Positives = 50/127 (39%), Gaps = 9/127 (7%)
Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
T LY+ N+I + + L+ L+LN ++ I L ++ L L N
Sbjct: 91 TNLYIGTNKITDISA--LQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLS 146
Query: 866 IRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSF-AVWHLSSQIQ 924
+ L L + +K+ ++ +LT L L L++N+I + L + +
Sbjct: 147 DLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISPLASL-TSLH 202
Query: 925 SITLTSN 931
T N
Sbjct: 203 YFTAYVN 209
Score = 36.8 bits (86), Expect = 0.037
Identities = 11/60 (18%), Positives = 23/60 (38%), Gaps = 2/60 (3%)
Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
L+L+ N++ G L LFL+ +H+ I L ++ + + +
Sbjct: 290 NSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIKK 347
Score = 34.8 bits (81), Expect = 0.18
Identities = 18/81 (22%), Positives = 25/81 (30%), Gaps = 19/81 (23%)
Query: 104 SPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHNVFT 163
L L L + ++GN GL L T L +S N T
Sbjct: 279 DISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTT--------------LFLSQNHIT 324
Query: 164 D-----ELQSLESLDLSMNSI 179
D L ++S D + I
Sbjct: 325 DIRPLASLSKMDSADFANQVI 345
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich
RE receptor-like kinases, leucine-rich repeat; HET: NAG
BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A*
3rj0_A*
Length = 768
Score = 207 bits (528), Expect = 1e-55
Identities = 135/622 (21%), Positives = 220/622 (35%), Gaps = 98/622 (15%)
Query: 87 VRLRIECGDMLFFQSSLSP--GSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLR 144
+ + + S++S S L L LS + GS G + +LT
Sbjct: 53 TSIDLSSKPLNVGFSAVSSSLLSLTGLESL-FLS------NSHINGSVSGFKCSASLT-- 103
Query: 145 THNTDWSTMSLDISHNVFTDE---------LQSLESLDLSMNSI-WTLPDAIFCPLQSLS 194
SLD+S N + L+ L++S N++ + + L SL
Sbjct: 104 ---------SLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLE 154
Query: 195 YLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFD-SLPAEGFSRLSRLQELYLQ 253
L+L+ N +S + D L+ L +S N + SR L+ L +
Sbjct: 155 VLDLSANSISGANVVGWVLSDGCG---ELKHLAISGNKISGDVD---VSRCVNLEFLDVS 208
Query: 254 GNILT----FLADHALDGLNSLTVLNLSVNNLV-NIPPELFNQSRDLKEVYLQNNSINVL 308
N + FL D ++L L++S N L + + + LK + + +N
Sbjct: 209 SNNFSTGIPFLGD-----CSALQHLDISGNKLSGDFSRAISTCTE-LKLLNISSNQFVGP 262
Query: 309 APGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMN-KLDSSIFKDLY 367
P L L L L+ N+ T E + L L+++ N +
Sbjct: 263 IPP-LP-LKSLQYLSLAENKFTGE-IPDFLSGACDTLTGLDLSGNHFYGAVPPFFGS-CS 318
Query: 368 RLQVLHLENNQIE-SIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTA-LSVLSLDNN 425
L+ L L +N + +T + L L +S N+ SL +L+A L L L +N
Sbjct: 319 LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSN 378
Query: 426 ELE-YIEENALKNS-TSLQDFHLNGNKLT-EIPKVLRNLHSLKTLDLGDNLIT-EINNLS 481
I N +N +LQ+ +L N T +IP L N L +L L N ++ I + S
Sbjct: 379 NFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPS-S 437
Query: 482 LNSLHQLAGLRLTENNIS-NISKGVFEKLSVLTILNLASNKIQKVEAGT----FDNNSNL 536
L SL +L L+L N + I + + + L L L N + G N +NL
Sbjct: 438 LGSLSKLRDLKLWLNMLEGEIPQELM-YVKTLETLILDFNDLT----GEIPSGLSNCTNL 492
Query: 537 VAIRLDGNYLTDIGGLFP----KLPNLVWLNISENLLEWFDYALIPAD------LQWLDI 586
I L N LT G P +L NL L +S N IPA+ L WLD+
Sbjct: 493 NWISLSNNRLT---GEIPKWIGRLENLAILKLSNNSF----SGNIPAELGDCRSLIWLDL 545
Query: 587 HGNQIS-----ELGNYFEIESQLRLTYFDASSNKLTELTGNAIPHSVENLFLTNNLISKV 641
+ N + + Q + + K N + +
Sbjct: 546 NTNLFNGTIPAAMFK------QSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGI 599
Query: 642 QPYTFFMKPNLTRVDLVGNRLK 663
+ ++
Sbjct: 600 RSEQLNRLSTRNPCNITSRVYG 621
Score = 195 bits (499), Expect = 6e-52
Identities = 137/560 (24%), Positives = 216/560 (38%), Gaps = 96/560 (17%)
Query: 154 SLDISHNVFTDE--------LQSLESLDLSMNSI-WTLPDAIFCP--LQSLSYLNLTQNK 202
L++S N L SLE LDLS NSI L +L ++ NK
Sbjct: 130 FLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNK 189
Query: 203 LSNVATFSFSNYDTARCGINLRVLDLSNNSFD-SLPAEGFSRLSRLQELYLQGNILT--- 258
+S S +NL LD+S+N+F +P S LQ L + GN L+
Sbjct: 190 ISG--DVDVSRC------VNLEFLDVSSNNFSTGIPF--LGDCSALQHLDISGNKLSGDF 239
Query: 259 -------------FLADHALDG------LNSLTVLNLSVNNLV-NIPPELFNQSRDLKEV 298
++ + G L SL L+L+ N IP L L +
Sbjct: 240 SRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGL 299
Query: 299 YLQNNSIN-VLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMN- 356
L N + P + + L L LS+N + E + T + L VL++++N+ +
Sbjct: 300 DLSGNHFYGAVPPFFGS-CSLLESLALSSNNFSGE-LPMDTLLKMRGLKVLDLSFNEFSG 357
Query: 357 KLDSSIFKDLYRLQVLHLENNQIE-SIHRN-TFASLSNLHTLIMSNNKLKRIESNSLDSL 414
+L S+ L L L +N I N + L L + NN +L +
Sbjct: 358 ELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNC 417
Query: 415 TALSVLSLDNNELE-YIEENALKNSTSLQDFHLNGNKLT-EIPKVLRNLHSLKTLDLGDN 472
+ L L L N L I + L + + L+D L N L EIP+ L + +L+TL L N
Sbjct: 418 SELVSLHLSFNYLSGTIPSS-LGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFN 476
Query: 473 LIT-EINNLSLNSLHQLAGLRLTENNIS-NISKGVFEKLSVLTILNLASNKIQKVEAGTF 530
+T EI + L++ L + L+ N ++ I K +L L IL L++N
Sbjct: 477 DLTGEIPS-GLSNCTNLNWISLSNNRLTGEIPKW-IGRLENLAILKLSNNS--------- 525
Query: 531 DNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYALIPADL--QWLDIHG 588
GN ++G +L+WL+++ NL IPA + Q I
Sbjct: 526 ----------FSGNIPAELG----DCRSLIWLDLNTNLFN----GTIPAAMFKQSGKIAA 567
Query: 589 NQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPHSVENL------FLTNNLISKVQ 642
N I+ Y I++ + N L E G + L +T+ +
Sbjct: 568 NFIAGK-RYVYIKNDGMKKECHGAGNLL-EFQGI-RSEQLNRLSTRNPCNITSRVYGGHT 624
Query: 643 PYTFFMKPNLTRVDLVGNRL 662
TF ++ +D+ N L
Sbjct: 625 SPTFDNNGSMMFLDMSYNML 644
Score = 187 bits (476), Expect = 4e-49
Identities = 122/501 (24%), Positives = 201/501 (40%), Gaps = 71/501 (14%)
Query: 154 SLDISHNVFTDE-----LQSLESLDLSMNSI-WTLPDAIFCPLQSLSYLNLTQNKLSNVA 207
L+IS N F L+SL+ L L+ N +PD + +L+ L+L+ N
Sbjct: 251 LLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAV 310
Query: 208 TFSFSNYDTARCGINLRVLDLSNNSF-DSLPAEGFSRLSRLQELYLQGNILT-FLADHAL 265
F + L L LS+N+F LP + ++ L+ L L N + L +
Sbjct: 311 PPFFGS------CSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLT 364
Query: 266 DGLNSLTVLNLSVNNLV-NIPPELFN-QSRDLKEVYLQNNSIN-VLAPGIFNVLTQLIVL 322
+ SL L+LS NN I P L L+E+YLQNN + P + N ++L+ L
Sbjct: 365 NLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSN-CSELVSL 423
Query: 323 DLSNNELT----EEWVNAATFSGLHRLVVLNIAYNKMN-KLDSSIFKDLYRLQVLHLENN 377
LS N L+ + L +L L + N + ++ + + L+ L L+ N
Sbjct: 424 HLSFNYLSGTIPSSLGS------LSKLRDLKLWLNMLEGEIPQELMY-VKTLETLILDFN 476
Query: 378 QIE-SIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELE-YIEENAL 435
+ I ++ +NL+ + +SNN+L + L L++L L NN I L
Sbjct: 477 DLTGEIPS-GLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAE-L 534
Query: 436 KNSTSLQDFHLNGNKLT-EIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLT 494
+ SL LN N IP + + + N I + + +
Sbjct: 535 GDCRSLIWLDLNTNLFNGTIPAAMFKQ----SGKIAANFIAGKRYVYIKNDGMKKECHGA 590
Query: 495 ENNIS---NISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLT---- 547
N + S+ + +LS N+ S + TFDNN +++ + + N L+
Sbjct: 591 GNLLEFQGIRSEQLN-RLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIP 649
Query: 548 -DIGGLFPKLPNLVWLNISENLLEWFDYALIPA------DLQWLDIHGNQISELGNYFEI 600
+IG +P L LN+ N + IP L LD+ N++ G I
Sbjct: 650 KEIG----SMPYLFILNLGHNDIS----GSIPDEVGDLRGLNILDLSSNKLD--G---RI 696
Query: 601 ESQL----RLTYFDASSNKLT 617
+ LT D S+N L+
Sbjct: 697 PQAMSALTMLTEIDLSNNNLS 717
Score = 167 bits (425), Expect = 1e-42
Identities = 111/478 (23%), Positives = 177/478 (37%), Gaps = 63/478 (13%)
Query: 222 NLRVLDLSNNSFDSLPAE---GFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSV 278
+ +DLS+ + + L+ L+ L+L + + + SLT L+LS
Sbjct: 51 KVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHING-SVSGFKCSASLTSLDLSR 109
Query: 279 NNLV-NIPP--ELFNQSRDLKEVYLQNNSIN-VLAPGIFNVLTQLIVLDLSNNELT-EEW 333
N+L + L + S LK + + +N+++ L L VLDLS N ++
Sbjct: 110 NSLSGPVTTLTSLGSCSG-LKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANV 168
Query: 334 VNAATFSGLHRLVVLNIAYNKMNKLDSSI-FKDLYRLQVLHLENNQIE-SIHRNTFASLS 391
V G L L I+ NK+ + L+ L + +N I S
Sbjct: 169 VGWVLSDGCGELKHLAISG---NKISGDVDVSRCVNLEFLDVSSNNFSTGI--PFLGDCS 223
Query: 392 NLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELE-YIEENALKNSTSLQDFHLNGNK 450
L L +S NKL S ++ + T L +L++ +N+ I SLQ L NK
Sbjct: 224 ALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL---PLKSLQYLSLAENK 280
Query: 451 LT-EIPKVLR-NLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNIS-NISKGVFE 507
T EIP L +L LDL N S L L L+ NN S +
Sbjct: 281 FTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLL 340
Query: 508 KLSVLTILNLASNKIQ-KVEAGTFDNNSNLVAIRLDGNYLT-----DIGGLFPKLPNLVW 561
K+ L +L+L+ N+ ++ + +++L+ + L N + ++ L
Sbjct: 341 KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQN--PKNTLQE 398
Query: 562 LNISENLLEWFDYALIPAD------LQWLDIHGNQIS-----ELGNYFEIESQLRLTYFD 610
L + N IP L L + N +S LG+ +L
Sbjct: 399 LYLQNNGFTGK----IPPTLSNCSELVSLHLSFNYLSGTIPSSLGSL------SKLRDLK 448
Query: 611 ASSNKLTELTGNAIPHSV------ENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRL 662
N L G IP + E L L N ++ P NL + L NRL
Sbjct: 449 LWLNM---LEGE-IPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRL 502
Score = 161 bits (409), Expect = 9e-41
Identities = 99/431 (22%), Positives = 157/431 (36%), Gaps = 63/431 (14%)
Query: 269 NSLTVLNLSVNNLVN----IPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDL 324
+ +T ++LS L + L + + L+ ++L N+ IN G L LDL
Sbjct: 50 DKVTSIDLSSKPLNVGFSAVSSSLLSLTG-LESLFLSNSHINGSVSGFKC-SASLTSLDL 107
Query: 325 SNNELTEEWVNAATFSGLHRLVVLNIAYNKMN-KLDSSIFKDLYRLQVLHLENNQIES-- 381
S N L+ + L LN++ N ++ S L L+VL L N I
Sbjct: 108 SRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGAN 167
Query: 382 -IHRNTFASLSNLHTLIMSNNKLK-RIESNSLDSLTALSVLSLDNNELE-YIEENALKNS 438
+ L L +S NK+ + + L L + +N I L +
Sbjct: 168 VVGWVLSDGCGELKHLAISGNKISGDV---DVSRCVNLEFLDVSSNNFSTGI--PFLGDC 222
Query: 439 TSLQDFHLNGNKLT-EIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENN 497
++LQ ++GNKL+ + + + LK L++ N + L L L L EN
Sbjct: 223 SALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFV--GPIPPLPLKSLQYLSLAENK 280
Query: 498 IS-NISKGVFEKLSVLTILNLASNKIQKVEAGT----FDNNSNLVAIRLDGNYLTDIGGL 552
+ I + LT L+L+ N G F + S L ++ L N + G
Sbjct: 281 FTGEIPDFLSGACDTLTGLDLSGNHFY----GAVPPFFGSCSLLESLALSSNNFS---GE 333
Query: 553 FP-----KLPNLVWLNISENLL-----EWFDYALIPADLQWLDIHGNQIS-----ELGNY 597
P K+ L L++S N E + A L LD+ N S L
Sbjct: 334 LPMDTLLKMRGLKVLDLSFNEFSGELPESLTN--LSASLLTLDLSSNNFSGPILPNLCQN 391
Query: 598 FEIESQLRLTYFDASSNKLTELTGNAIPHSVEN------LFLTNNLISKVQPYTFFMKPN 651
+ L +N TG IP ++ N L L+ N +S P +
Sbjct: 392 ----PKNTLQELYLQNNG---FTGK-IPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSK 443
Query: 652 LTRVDLVGNRL 662
L + L N L
Sbjct: 444 LRDLKLWLNML 454
Score = 144 bits (366), Expect = 2e-35
Identities = 101/439 (23%), Positives = 165/439 (37%), Gaps = 76/439 (17%)
Query: 105 PGSFQTLIDLKDLSVEFCKI-GNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHNVFT 163
P F + L+ L++ G L + +R LK LD+S N F+
Sbjct: 311 PPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLK--------------VLDLSFNEFS 356
Query: 164 DEL--------QSLESLDLSMNSIW-TLPDAIF-CPLQSLSYLNLTQNKLSNVATFSFSN 213
EL SL +LDLS N+ + + P +L L L N + + SN
Sbjct: 357 GELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSN 416
Query: 214 YDTARCGINLRVLDLSNNSFD-SLPAEGFSRLSRLQELYLQGNILT-----FLADHALDG 267
L L LS N ++P+ LS+L++L L N+L L
Sbjct: 417 C------SELVSLHLSFNYLSGTIPSS-LGSLSKLRDLKLWLNMLEGEIPQELMY----- 464
Query: 268 LNSLTVLNLSVNNLV-NIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSN 326
+ +L L L N+L IP L N +L + L NN + P L L +L LSN
Sbjct: 465 VKTLETLILDFNDLTGEIPSGLSN-CTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSN 523
Query: 327 NELTEEWVNAATFSGLHRLVVLNIAYNK-----------------MNKLDSSIFKDL--- 366
N + A L+ L++ N N + + +
Sbjct: 524 NSFSGNI--PAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKND 581
Query: 367 YRLQVLHLENN--QIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDN 424
+ H N + + I LS + +++ S + D+ ++ L +
Sbjct: 582 GMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSY 641
Query: 425 NELE-YI-EENALKNSTSLQDFHLNGNKLT-EIPKVLRNLHSLKTLDLGDNLIT-EINNL 480
N L YI +E + + L +L N ++ IP + +L L LDL N + I
Sbjct: 642 NMLSGYIPKE--IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ- 698
Query: 481 SLNSLHQLAGLRLTENNIS 499
++++L L + L+ NN+S
Sbjct: 699 AMSALTMLTEIDLSNNNLS 717
Score = 96.1 bits (240), Expect = 3e-20
Identities = 56/282 (19%), Positives = 107/282 (37%), Gaps = 35/282 (12%)
Query: 154 SLDISHNVFTDE-------LQSLESLDLSMNSIW-TLPDAIFCPLQSLSYLNLTQNKLSN 205
+L + N T E +L + LS N + +P I L++L+ L L+ N S
Sbjct: 470 TLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI-GRLENLAILKLSNNSFSG 528
Query: 206 VATFSFSNYDTARCGINLRVLDLSNNSFD-SLPAEGFSRLSRLQELYLQGNILTFLADHA 264
+ +L LDL+ N F+ ++PA F + ++ ++ G ++ +
Sbjct: 529 NIPAELGDC------RSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKN-- 580
Query: 265 LDGLNSLTVLNLSVNNLV---NIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIV 321
+ + N L +L S + + F+ ++
Sbjct: 581 ---DGMKKECHGAGNLLEFQGIRSEQLNRLS-TRNPCNITSRVYGGHTSPTFDNNGSMMF 636
Query: 322 LDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSI---FKDLYRLQVLHLENNQ 378
LD+S N L+ + L +LN+ + N + SI DL L +L L +N+
Sbjct: 637 LDMSYNMLSGYI--PKEIGSMPYLFILNLGH---NDISGSIPDEVGDLRGLNILDLSSNK 691
Query: 379 IESIHRNTFASLSNLHTLIMSNNKLK-RI-ESNSLDSLTALS 418
++ ++L+ L + +SNN L I E ++
Sbjct: 692 LDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAK 733
Score = 85.0 bits (211), Expect = 8e-17
Identities = 66/277 (23%), Positives = 108/277 (38%), Gaps = 42/277 (15%)
Query: 410 SLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLT-EIPKVLRNLHSLKTLD 468
D +T++ + S N ++L + T L+ L+ + + + + SL +LD
Sbjct: 48 RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG-FKCSASLTSLD 106
Query: 469 LGDNLIT-EI-NNLSLNSLHQLAGLRLTENNIS-NISKGVFEKLSVLTILNLASNKIQK- 524
L N ++ + SL S L L ++ N + KL+ L +L+L++N I
Sbjct: 107 LSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGA 166
Query: 525 --VEAGTFDNNSNLVAIRLDGNYLTDIGGLFP--KLPNLVWLNISENLLEWFDYALIPA- 579
V D L + + GN ++ G + NL +L++S N IP
Sbjct: 167 NVVGWVLSDGCGELKHLAISGNKIS---GDVDVSRCVNLEFLDVSSNNFS----TGIPFL 219
Query: 580 ----DLQWLDIHGNQIS-----ELGNYFEIESQLRLTYFDASSNKLTELTGNAIP----H 626
LQ LDI GN++S + L + SSN+ G IP
Sbjct: 220 GDCSALQHLDISGNKLSGDFSRAIST------CTELKLLNISSNQ---FVGP-IPPLPLK 269
Query: 627 SVENLFLTNNLISKVQPYTFFMK-PNLTRVDLVGNRL 662
S++ L L N + P LT +DL GN
Sbjct: 270 SLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHF 306
Score = 46.4 bits (111), Expect = 6e-05
Identities = 32/131 (24%), Positives = 48/131 (36%), Gaps = 7/131 (5%)
Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVE-TIHNKTFNGLKELIILRLDDNRLT 864
L + N+ VG + K LQ L L + I + L L L N
Sbjct: 250 KLLNISSNQF--VGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFY 307
Query: 865 EIRGYEFERLENLRELYLQYNKII-YISNRTFLSLTHLKVLQLDHNRIT---SFAVWHLS 920
F L L L N + T L + LKVL L N + ++ +LS
Sbjct: 308 GAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLS 367
Query: 921 SQIQSITLTSN 931
+ + ++ L+SN
Sbjct: 368 ASLLTLDLSSN 378
Score = 39.5 bits (93), Expect = 0.008
Identities = 18/93 (19%), Positives = 33/93 (35%), Gaps = 8/93 (8%)
Query: 847 FNGLKELIILRLDDNRLT-EI-RGYEFERLENLRELYLQYNKI-IYISNRTFLSLTHLKV 903
F L L L N L+ + L+ L + N + L L L+V
Sbjct: 96 FKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEV 155
Query: 904 LQLDHNRIT-----SFAVWHLSSQIQSITLTSN 931
L L N I+ + + +++ + ++ N
Sbjct: 156 LDLSANSISGANVVGWVLSDGCGELKHLAISGN 188
Score = 36.4 bits (85), Expect = 0.060
Identities = 24/114 (21%), Positives = 38/114 (33%), Gaps = 11/114 (9%)
Query: 806 TELYLDGNR----IPVVGSHSFIGRKKLQILFLNSSHVE-TIHNKTFNGLKELIILRLDD 860
L L N+ IP S + L L L+ +H + F L L L
Sbjct: 272 QYLSLAENKFTGEIPDFLSGAC---DTLTGLDLSGNHFYGAVPP-FFGSCSLLESLALSS 327
Query: 861 NRLT-EIRGYEFERLENLRELYLQYNKII-YISNRTFLSLTHLKVLQLDHNRIT 912
N + E+ ++ L+ L L +N+ + L L L N +
Sbjct: 328 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFS 381
Score = 35.7 bits (83), Expect = 0.11
Identities = 30/118 (25%), Positives = 45/118 (38%), Gaps = 20/118 (16%)
Query: 806 TELYLDGNRI--PVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNG--------LKELII 855
L L N P++ + + LQ L+L +N F G EL+
Sbjct: 371 LTLDLSSNNFSGPILPNLCQNPKNTLQELYLQ-------NNG-FTGKIPPTLSNCSELVS 422
Query: 856 LRLDDNRLT-EIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRIT 912
L L N L+ I L LR+L L N + + + + L+ L LD N +T
Sbjct: 423 LHLSFNYLSGTI-PSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLT 479
Score = 35.7 bits (83), Expect = 0.12
Identities = 27/153 (17%), Positives = 49/153 (32%), Gaps = 21/153 (13%)
Query: 793 YDNQLPPRIPMDA-------TELYLDGNRI--PVVGSHSFIGR-KKLQILFLNSSHVE-T 841
N L + L L N I V +L+ L ++ + +
Sbjct: 134 SSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGD 193
Query: 842 IHNKTFNGLKELIILRLDDNRLTEIRGY--EFERLENLRELYLQYNKIIYISNRTFLSLT 899
+ + L L + N + L+ L + NK+ +R + T
Sbjct: 194 V---DVSRCVNLEFLDVSSNNFS---TGIPFLGDCSALQHLDISGNKLSGDFSRAISTCT 247
Query: 900 HLKVLQLDHNRIT-SFAVWHLSSQIQSITLTSN 931
LK+L + N+ L S +Q ++L N
Sbjct: 248 ELKLLNISSNQFVGPIPPLPLKS-LQYLSLAEN 279
Score = 31.8 bits (73), Expect = 1.7
Identities = 30/123 (24%), Positives = 38/123 (30%), Gaps = 32/123 (26%)
Query: 806 TELYLDGNR----IPVVGSHSFIGR-KKLQILFLNSSHVETIHNK-------TFNGLKEL 853
+L L N IP + K L+ L L+ N + L
Sbjct: 445 RDLKLWLNMLEGEIP-----QELMYVKTLETLILD-------FNDLTGEIPSGLSNCTNL 492
Query: 854 IILRLDDNRLTEIRG---YEFERLENLRELYLQYNKII-YISNRTFLSLTHLKVLQLDHN 909
+ L +NRLT G RLENL L L N I L L L+ N
Sbjct: 493 NWISLSNNRLT---GEIPKWIGRLENLAILKLSNNSFSGNIPA-ELGDCRSLIWLDLNTN 548
Query: 910 RIT 912
Sbjct: 549 LFN 551
Score = 30.3 bits (69), Expect = 5.5
Identities = 18/106 (16%), Positives = 33/106 (31%), Gaps = 4/106 (3%)
Query: 810 LDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHN--KTFNGLKELIILRLDDNRLTEIR 867
+ N I + + +E + N L +
Sbjct: 565 IAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHT 624
Query: 868 GYEFERLENLRELYLQYNKII-YISNRTFLSLTHLKVLQLDHNRIT 912
F+ ++ L + YN + YI S+ +L +L L HN I+
Sbjct: 625 SPTFDNNGSMMFLDMSYNMLSGYIPK-EIGSMPYLFILNLGHNDIS 669
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding,
structural genomics, center for structural genomics,
JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Length = 636
Score = 203 bits (518), Expect = 3e-55
Identities = 93/594 (15%), Positives = 196/594 (32%), Gaps = 96/594 (16%)
Query: 105 PGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHNVFTD 164
P + L +L+ L++ K ++ + M + F D
Sbjct: 98 PDAIGQLTELEVLALGSHGEKVNERLFG-----PKGISANMSDEQKQKMRMHYQKT-FVD 151
Query: 165 ELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLR 224
+ DL + I + P S L TQ
Sbjct: 152 YDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQ------------------------ 187
Query: 225 VLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNI 284
+ +N+ + RL++L++ Y+ + A + + N
Sbjct: 188 -IGQLSNNITFVSKA-VMRLTKLRQFYMGNSPFV-----AENICEAWENENSEYAQQYKT 240
Query: 285 PPELFNQSRDLKEVYLQNNS-INVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLH 343
++ +DL +V + N + L + L ++ +++++ N + L
Sbjct: 241 EDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA-LPEMQLINVACNRGISGEQLKDDWQALA 299
Query: 344 RLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHR-NTFASLSNLHTLIMSNNK 402
V ++Q++++ N +++ + + L L N+
Sbjct: 300 DAPVGE------------------KIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQ 341
Query: 403 LKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVL--RN 460
L+ + S L+ L+L N++ I N + +++ NKL IP + ++
Sbjct: 342 LEGK-LPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKS 400
Query: 461 LHSLKTLDLGDNLITEINNLSLNS-------LHQLAGLRLTENNISNISKGVFEKLSVLT 513
+ + +D N I ++ + + ++ + L+ N IS K +F S L+
Sbjct: 401 VSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLS 460
Query: 514 ILNLASNKIQKVEAGT-------FDNNSNLVAIRLDGNYLTDI--GGLFPKLPNLVWLNI 564
+NL N + ++ + F N L +I L N LT + LP LV +++
Sbjct: 461 SINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDL 520
Query: 565 SENLLEWFDYALIPAD------LQWLDIHGNQISELGNYF------EIESQLRLTYFDAS 612
S N P L+ I + ++ GN I LT
Sbjct: 521 SYNSFS-----KFPTQPLNSSTLKGFGIRNQRDAQ-GNRTLREWPEGITLCPSLTQLQIG 574
Query: 613 SNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNIN 666
SN + ++ I ++ L + +N + L ++ ++I
Sbjct: 575 SNDIRKVN-EKITPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIR 627
Score = 202 bits (516), Expect = 6e-55
Identities = 86/554 (15%), Positives = 169/554 (30%), Gaps = 86/554 (15%)
Query: 161 VFTDELQSLESLDLSMNSIW-TLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSN---YDT 216
V + + L L +PDAI L L L L + +
Sbjct: 75 VSLNSNGRVTGLSLEGFGASGRVPDAIGQ-LTELEVLALGSHGEKVNERLFGPKGISANM 133
Query: 217 ARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNL 276
+ + D P E FS L + + + + T +
Sbjct: 134 SDEQKQKMRMHYQKTFVDYDPREDFSDLIKD---CINSDPQQKSIKKSSRITLKDTQIGQ 190
Query: 277 SVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNA 336
NN+ + + LT+L + N+ E
Sbjct: 191 LSNNITFVSKAVMR-------------------------LTKLRQFYMGNSPFVAE---- 221
Query: 337 ATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHL-ENNQIESIHRNTFASLSNLHT 395
+ N Y + K + + +L L + + + + +L +
Sbjct: 222 ---NICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLP-TFLKALPEMQL 277
Query: 396 LIMSNNKLKRIESN--------SLDSLTALSVLSLDNNELEYIE-ENALKNSTSLQDFHL 446
+ ++ N+ E + ++ + N L+ E +L+ L
Sbjct: 278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLEC 337
Query: 447 NGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVF 506
N+L + L +L+L N ITEI Q+ L N + I
Sbjct: 338 LYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFD 397
Query: 507 -EKLSVLTILNLASNKIQKVEAGTFD-------NNSNLVAIRLDGNYLTD-IGGLFPKLP 557
+ +SV++ ++ + N+I V+ FD N+ +I L N ++ LF
Sbjct: 398 AKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGS 457
Query: 558 NLVWLNISENLLE---WFDYALIPAD------LQWLDIHGNQISELGNYFEIESQLRLTY 608
L +N+ N+L + L +D+ N++++L + F + L
Sbjct: 458 PLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVG 517
Query: 609 FDASSNKLTELTGNAIPHSV------------ENLFLTNNLISKVQPYTFFMKPNLTRVD 656
D S N ++ P N + P + P+LT++
Sbjct: 518 IDLSYNSFSK-----FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQ 572
Query: 657 LVGNRLKNINQTAL 670
+ N ++ +N+
Sbjct: 573 IGSNDIRKVNEKIT 586
Score = 166 bits (423), Expect = 5e-43
Identities = 71/476 (14%), Positives = 155/476 (32%), Gaps = 47/476 (9%)
Query: 227 DLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNL-VNIP 285
+ + + + P + R+ L L+G + A+ L L VL L + VN
Sbjct: 63 NKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNER 122
Query: 286 PELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELT---EEWVNAATFSGL 342
+ + + DL + + ++ +
Sbjct: 123 LFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRIT 182
Query: 343 HRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNK 402
+ + N + + ++ + L +L+ ++ N+ + + N +
Sbjct: 183 LKDTQIGQLSNNITFVSKAVMR-LTKLRQFYMGNSPFVAENICEAWENENS-----EYAQ 236
Query: 403 LKRIESNSLDSLTALSVLSL-DNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKV---- 457
+ E D+L L+ + + + L + LK +Q ++ N+ ++
Sbjct: 237 QYKTEDLKWDNLKDLTDVEVYNCPNLTKLPT-FLKALPEMQLINVACNRGISGEQLKDDW 295
Query: 458 -----LRNLHSLKTLDLGDNLITEIN-NLSLNSLHQLAGLRLTENNISNISKGVFEKLSV 511
++ + +G N + SL + +L L N + F
Sbjct: 296 QALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPA-FGSEIK 354
Query: 512 LTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDI--GGLFPKLPNLVWLNISENLL 569
L LNLA N+I ++ A + + N L I + + ++ S N +
Sbjct: 355 LASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEI 414
Query: 570 EWFDYAL---IPAD------LQWLDIHGNQISELGNYFEIESQLR-LTYFDASSNKLTEL 619
D + + +++ NQIS+ E+ S L+ + N LTE+
Sbjct: 415 GSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPK--ELFSTGSPLSSINLMGNMLTEI 472
Query: 620 TGNAIP---------HSVENLFLTNNLISKVQPYTFFMK-PNLTRVDLVGNRLKNI 665
N++ + + ++ L N ++K+ P L +DL N
Sbjct: 473 PKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKF 528
Score = 146 bits (370), Expect = 2e-36
Identities = 63/431 (14%), Positives = 139/431 (32%), Gaps = 41/431 (9%)
Query: 275 NLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWV 334
N ++ P N + + + L+ + P LT+L VL L ++
Sbjct: 63 NKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEK-VNE 121
Query: 335 NAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIH-----RNTFAS 389
G+ + + R L + I S + +
Sbjct: 122 RLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRI 181
Query: 390 LSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGN 449
+ +N + + S ++ LT L + N+ + + +
Sbjct: 182 TLKDTQIGQLSNNITFV-SKAVMRLTKLRQFYMGNSPFVAENICEAWENENSE----YAQ 236
Query: 450 KLTEIPKVLRNLHSLKTLDLGD-NLITEINNLSLNSLHQLAGLRLTENNISNISK----- 503
+ NL L +++ + +T++ L +L ++ + + N + +
Sbjct: 237 QYKTEDLKWDNLKDLTDVEVYNCPNLTKLPT-FLKALPEMQLINVACNRGISGEQLKDDW 295
Query: 504 ---GVFEKLSVLTILNLASNKIQKVEA-GTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNL 559
+ I+ + N ++ + L + N L F L
Sbjct: 296 QALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKL 355
Query: 560 VWLNISENLLEWFDYALIPA------DLQWLDIHGNQISELGNYFEIESQLRLTYFDASS 613
LN++ N + + ++ L N++ + N F+ +S ++ D S
Sbjct: 356 ASLNLAYNQIT----EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSY 411
Query: 614 NKLTELTGNAIPH---------SVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKN 664
N++ + G +V ++ L+NN ISK F L+ ++L+GN L
Sbjct: 412 NEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTE 471
Query: 665 INQTALRISPL 675
I + +L+
Sbjct: 472 IPKNSLKDENE 482
Score = 132 bits (335), Expect = 5e-32
Identities = 65/327 (19%), Positives = 114/327 (34%), Gaps = 53/327 (16%)
Query: 104 SPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSL-DISHNVF 162
+F + I L L++ + +I + A +++ L+ HN L I +
Sbjct: 345 KLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFA-HN------KLKYIPNIFD 397
Query: 163 TDELQSLESLDLSMNSIWTLPDAIF-------CPLQSLSYLNLTQNKLSNVATFSFSNYD 215
+ + ++D S N I ++ F ++S +NL+ N++S FS
Sbjct: 398 AKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFST-- 455
Query: 216 TARCGINLRVLDLSNNSFDSLPA-------EGFSRLSRLQELYLQGNILTFL-ADHALDG 267
G L ++L N +P E F L + L+ N LT L D
Sbjct: 456 ----GSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATT 511
Query: 268 LNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNN 327
L L ++LS N+ P + N S LK ++N D N
Sbjct: 512 LPYLVGIDLSYNSFSKFPTQPLNSST-LKGFGIRNQ------------------RDAQGN 552
Query: 328 ELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTF 387
EW + L L I N + K++ I + VL +++N SI +
Sbjct: 553 RTLREW--PEGITLCPSLTQLQIGSNDIRKVNEKITP---NISVLDIKDNPNISIDLSYV 607
Query: 388 ASLSNLHTLIMSNNKLKRIESNSLDSL 414
++ +K + I +
Sbjct: 608 CPYIEAGMYMLFYDKTQDIRGCDALDI 634
Score = 73.2 bits (180), Expect = 3e-13
Identities = 32/217 (14%), Positives = 59/217 (27%), Gaps = 51/217 (23%)
Query: 101 SSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRG----LRKLKTLTLRTHNTDWSTMSLD 156
S F T L +++ + + S + + LT S+D
Sbjct: 446 SKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLT-----------SID 494
Query: 157 ISHNVFTD--------ELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVAT 208
+ N T L L +DLS NS P +L +
Sbjct: 495 LRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPL-NSSTLKGFGIRNQ------- 546
Query: 209 FSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGL 268
D N EG + L +L + N + + +
Sbjct: 547 -----------------RDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKI---T 586
Query: 269 NSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSI 305
+++VL++ N ++I + L +
Sbjct: 587 PNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKT 623
Score = 67.4 bits (165), Expect = 2e-11
Identities = 27/128 (21%), Positives = 49/128 (38%), Gaps = 3/128 (2%)
Query: 806 TELYLDGNRIPVVGSHSFIGR-KKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLT 864
+Y+ N + + + + KKL +L + +E F +L L L N++T
Sbjct: 308 QIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT 366
Query: 865 EIRGYEFERLENLRELYLQYNKIIYISNRTFL-SLTHLKVLQLDHNRITSFAVWHLSSQI 923
EI E + L +NK+ YI N S++ + + +N I S +
Sbjct: 367 EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLD 426
Query: 924 QSITLTSN 931
+ N
Sbjct: 427 PTPFKGIN 434
Score = 62.4 bits (152), Expect = 7e-10
Identities = 23/145 (15%), Positives = 50/145 (34%), Gaps = 20/145 (13%)
Query: 806 TELYLDGNRIPVVGSHSFIGR-KKLQILFLNSSHVETIHNKTFNGLKE-------LIILR 857
L N++ + + + + + + + ++ K F+ L + +
Sbjct: 380 ENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSIN 439
Query: 858 LDDNRLTEIRGYEFERLENLRELYLQYNKIIYIS-------NRTFLSLTHLKVLQLDHNR 910
L +N++++ F L + L N + I N F + L + L N+
Sbjct: 440 LSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNK 499
Query: 911 ITS----FAVWHLSSQIQSITLTSN 931
+T F L + I L+ N
Sbjct: 500 LTKLSDDFRATTLPY-LVGIDLSYN 523
Score = 62.0 bits (151), Expect = 9e-10
Identities = 20/129 (15%), Positives = 48/129 (37%), Gaps = 8/129 (6%)
Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNG-LKELIILRLDDNRLT 864
L L N+I + ++ ++++ L + ++ I N + + + N +
Sbjct: 356 ASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIG 415
Query: 865 EIRGYEFE-------RLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVW 917
+ G F+ + N+ + L N+I F + + L + L N +T
Sbjct: 416 SVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKN 475
Query: 918 HLSSQIQSI 926
L + ++
Sbjct: 476 SLKDENENF 484
Score = 61.6 bits (150), Expect = 1e-09
Identities = 22/131 (16%), Positives = 48/131 (36%), Gaps = 10/131 (7%)
Query: 806 TELYLDGNRIPVVGSHSFIGR--------KKLQILFLNSSHVETIH-NKTFNGLKELIIL 856
+ + NR + +K+QI+++ ++++T + +K+L +L
Sbjct: 276 QLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGML 335
Query: 857 RLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAV 916
N+L F L L L YN+I I ++ L HN++
Sbjct: 336 ECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPN 394
Query: 917 WHLSSQIQSIT 927
+ + ++
Sbjct: 395 IFDAKSVSVMS 405
Score = 53.5 bits (129), Expect = 4e-07
Identities = 29/213 (13%), Positives = 63/213 (29%), Gaps = 16/213 (7%)
Query: 460 NLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLAS 519
+ + ++ +SLNS ++ GL L S +L+ L +L L S
Sbjct: 55 QPGANWNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGS 114
Query: 520 NKIQKVEAGTFDNN--SNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEW-FDYAL 576
+ + E +N+ + + P + ++ ++ +
Sbjct: 115 HGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKS 174
Query: 577 IPAD------LQWLDIHGNQISELGNYFEIESQLR-LTYFDASSNKLTELTGNAIPHSVE 629
I + N I+ + +L L F ++ I + E
Sbjct: 175 IKKSSRITLKDTQIGQLSNNITFVSKAV---MRLTKLRQFYMGNSP---FVAENICEAWE 228
Query: 630 NLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRL 662
N K + + +LT V++
Sbjct: 229 NENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPN 261
Score = 47.0 bits (112), Expect = 4e-05
Identities = 20/146 (13%), Positives = 44/146 (30%), Gaps = 13/146 (8%)
Query: 806 TELYLDGNRIPVVGSHSFIGR-KKLQILFLNSSHVETI-----HNKTFNGLKELIILRLD 859
T + L N++ + L + L+ + ++ T G
Sbjct: 491 TSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQ 550
Query: 860 DNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHL 919
NR +L +L + N I ++ + ++ VL + N S + ++
Sbjct: 551 GNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKI---TPNISVLDIKDNPNISIDLSYV 607
Query: 920 SSQIQSITLT---SNPWSC-DCDFTE 941
I++ CD +
Sbjct: 608 CPYIEAGMYMLFYDKTQDIRGCDALD 633
Score = 39.6 bits (93), Expect = 0.008
Identities = 13/103 (12%), Positives = 30/103 (29%), Gaps = 4/103 (3%)
Query: 804 DATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRL 863
++ + F L +NS + K+ + + N +
Sbjct: 139 QKMRMHYQKTFVDYDPREDFS---DLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNI 195
Query: 864 TEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQL 906
T + RL LR+ Y+ + + + + + Q
Sbjct: 196 TFVSK-AVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQ 237
Score = 39.3 bits (92), Expect = 0.008
Identities = 15/120 (12%), Positives = 43/120 (35%), Gaps = 10/120 (8%)
Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNK--TFNGLKELIILRLDDNRL 863
T++ N I V S + + KL+ ++ ++ N + + +
Sbjct: 186 TQIGQLSNNITFV-SKAVMRLTKLRQFYMG-------NSPFVAENICEAWENENSEYAQQ 237
Query: 864 TEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSSQI 923
+ +++ L++L ++ + + +L ++++ + NR S Q
Sbjct: 238 YKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQA 297
Score = 34.6 bits (80), Expect = 0.21
Identities = 12/95 (12%), Positives = 23/95 (24%), Gaps = 8/95 (8%)
Query: 846 TFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLS----LTHL 901
+ N + L L+ + +L L L L +
Sbjct: 76 SLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSD 135
Query: 902 KVLQLDHNRITSFAVWHLS----SQIQSITLTSNP 932
+ Q V + S + + S+P
Sbjct: 136 EQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDP 170
Score = 33.1 bits (76), Expect = 0.67
Identities = 15/95 (15%), Positives = 24/95 (25%)
Query: 859 DDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWH 918
+ + G + L L+ LT L+VL L +
Sbjct: 65 ELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLF 124
Query: 919 LSSQIQSITLTSNPWSCDCDFTEKFRDYLQRSRSS 953
I + + + F DY R S
Sbjct: 125 GPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFS 159
Score = 31.6 bits (72), Expect = 1.9
Identities = 13/72 (18%), Positives = 23/72 (31%), Gaps = 3/72 (4%)
Query: 827 KKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNK 886
L L + S+ + ++ K + +L + DN I L Y+K
Sbjct: 566 PSLTQLQIGSNDIRKVNEKITPNIS---VLDIKDNPNISIDLSYVCPYIEAGMYMLFYDK 622
Query: 887 IIYISNRTFLSL 898
I L +
Sbjct: 623 TQDIRGCDALDI 634
Score = 31.2 bits (71), Expect = 3.0
Identities = 11/87 (12%), Positives = 22/87 (25%), Gaps = 1/87 (1%)
Query: 828 KLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLT-EIRGYEFERLENLRELYLQYNK 886
++ L L L EL +L L + R + + + +
Sbjct: 82 RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKM 141
Query: 887 IIYISNRTFLSLTHLKVLQLDHNRITS 913
++ L + I S
Sbjct: 142 RMHYQKTFVDYDPREDFSDLIKDCINS 168
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like
receptor, MD-2, LPS, leucine-rich repeat, glycoprotein,
immune response; HET: NAG BMA FUL; 1.90A {Eptatretus
burgeri}
Length = 306
Score = 192 bits (490), Expect = 8e-55
Identities = 66/235 (28%), Positives = 108/235 (45%), Gaps = 8/235 (3%)
Query: 222 NLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTF--LADHALDGLNSLTVLNLSVN 279
+ L+L +N SLP F +L++L +L L N L+F + G SL L+LS N
Sbjct: 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88
Query: 280 NLVNIPPELFNQSRDLKEVYLQNNSINVL-APGIFNVLTQLIVLDLSNNELTEEWVNAAT 338
++ + F L+ + Q++++ + +F L LI LD+S+
Sbjct: 89 GVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV--AFNGI 145
Query: 339 FSGLHRLVVLNIAYNKMNK-LDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLI 397
F+GL L VL +A N + IF +L L L L Q+E + F SLS+L L
Sbjct: 146 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 205
Query: 398 MSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKN-STSLQDFHLNGNKL 451
MS+N +++ L +L VL N + ++ L++ +SL +L N
Sbjct: 206 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260
Score = 187 bits (476), Expect = 6e-53
Identities = 69/261 (26%), Positives = 114/261 (43%), Gaps = 10/261 (3%)
Query: 217 ARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNL 276
+RC + + ++ S+P G S L L+ N L L D L LT L+L
Sbjct: 3 SRCSCSGTEIRCNSKGLTSVPT-GIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSL 59
Query: 277 SVNNL--VNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWV 334
S N L + + LK + L N + + F L QL LD ++ L +
Sbjct: 60 SSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMS- 117
Query: 335 NAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQ-IESIHRNTFASLSNL 393
+ F L L+ L+I++ + IF L L+VL + N E+ + F L NL
Sbjct: 118 EFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 177
Query: 394 HTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTE 453
L +S +L+++ + +SL++L VL++ +N ++ K SLQ + N +
Sbjct: 178 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT 237
Query: 454 IPK-VLRNL-HSLKTLDLGDN 472
K L++ SL L+L N
Sbjct: 238 SKKQELQHFPSSLAFLNLTQN 258
Score = 187 bits (476), Expect = 6e-53
Identities = 61/278 (21%), Positives = 123/278 (44%), Gaps = 30/278 (10%)
Query: 270 SLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNEL 329
S T + + L ++P + + L++N + L G+F+ LTQL L LS+N L
Sbjct: 8 SGTEIRCNSKGLTSVPTGIP---SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGL 64
Query: 330 TEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIH-RNTFA 388
+ + + + G L L++++N + + S+ F L +L+ L +++ ++ + + F
Sbjct: 65 SFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFL 123
Query: 389 SLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSL-DNNELEYIEENALKNSTSLQDFHLN 447
SL NL L +S+ + + + L++L VL + N+ E +
Sbjct: 124 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF------------ 171
Query: 448 GNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFE 507
L +L LDL + +++ + NSL L L ++ NN ++ ++
Sbjct: 172 -----------TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYK 220
Query: 508 KLSVLTILNLASNKIQKVEAGTFDN-NSNLVAIRLDGN 544
L+ L +L+ + N I + + S+L + L N
Sbjct: 221 CLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258
Score = 181 bits (462), Expect = 5e-51
Identities = 69/239 (28%), Positives = 112/239 (46%), Gaps = 10/239 (4%)
Query: 168 SLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLD 227
S L+L N + +LP +F L L+ L+L+ N LS S S++ T +L+ LD
Sbjct: 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTT----SLKYLD 84
Query: 228 LSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADH-ALDGLNSLTVLNLSVNNLVNIPP 286
LS N ++ + F L +L+ L Q + L +++ L +L L++S +
Sbjct: 85 LSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN 143
Query: 287 ELFNQSRDLKEVYLQNNS-INVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRL 345
+FN L+ + + NS P IF L L LDLS +L + ++ F+ L L
Sbjct: 144 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ--LSPTAFNSLSSL 201
Query: 346 VVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASL-SNLHTLIMSNNKL 403
VLN+++N LD+ +K L LQVL N I + + S+L L ++ N
Sbjct: 202 QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260
Score = 158 bits (402), Expect = 5e-43
Identities = 52/233 (22%), Positives = 99/233 (42%), Gaps = 10/233 (4%)
Query: 369 LQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIE--SNSLDSLTALSVLSLDNNE 426
L LE+N+++S+ F L+ L L +S+N L S S T+L L L N
Sbjct: 30 ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89
Query: 427 LEYIEENALKNSTSLQDFHLNGNKLTEIPK--VLRNLHSLKTLDLGDNLITEINNLSLNS 484
+ + + L+ + L ++ + V +L +L LD+ N N
Sbjct: 90 VITMS-SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 148
Query: 485 LHQLAGLRLTENN-ISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDG 543
L L L++ N+ N +F +L LT L+L+ +++++ F++ S+L + +
Sbjct: 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 208
Query: 544 NYLTDI-GGLFPKLPNLVWLNISENLLEWFDYAL---IPADLQWLDIHGNQIS 592
N + + L +L L+ S N + P+ L +L++ N +
Sbjct: 209 NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261
Score = 150 bits (382), Expect = 2e-40
Identities = 65/356 (18%), Positives = 127/356 (35%), Gaps = 80/356 (22%)
Query: 370 QVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEY 429
+ + + S+ S+ L + +NKL+ + D LT L+ LSL +N L +
Sbjct: 10 TEIRCNSKGLTSVPTGIP---SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSF 66
Query: 430 IE--ENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSL-NSLH 486
+ +TSL+ L+ N + + L L+ LD + + +++ S+ SL
Sbjct: 67 KGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 126
Query: 487 QLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYL 546
L L ++ + G+F LS L +L +A N Q+
Sbjct: 127 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE---------------------- 164
Query: 547 TDIGGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRL 606
+ +F +L NL +LD+ Q+ +L
Sbjct: 165 NFLPDIFTELRNL----------------------TFLDLSQCQLEQLSP---------- 192
Query: 607 TYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNIN 666
+ N L+ L L +++N + + + +L +D N +
Sbjct: 193 ----TAFNSLSSLQ---------VLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSK 239
Query: 667 QTALRISPLPSHKNIPDFYIGENPFQCDCNMQWLQSYSVNKERNKPNLVDLDTVTC 722
+ L PS ++ + +N F C C Q + + + LV+++ + C
Sbjct: 240 KQEL--QHFPS--SLAFLNLTQNDFACTCEHQSFLQWI---KDQRQLLVEVERMEC 288
Score = 143 bits (363), Expect = 7e-38
Identities = 57/232 (24%), Positives = 96/232 (41%), Gaps = 19/232 (8%)
Query: 101 SSLSPGSFQTLIDLKDLSVEFCKI--GNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDIS 158
SL G F L L LS+ + + S G LK L L + N +
Sbjct: 41 QSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL-SFN------GVITM 93
Query: 159 HNVFTDELQSLESLDLSMNSIWTLPDA-IFCPLQSLSYLNLTQNKLSNVATFSFSNYDTA 217
+ F L+ LE LD +++ + + +F L++L YL+++ F+
Sbjct: 94 SSNF-LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS-- 150
Query: 218 RCGINLRVLDLSNNSF-DSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNL 276
+L VL ++ NSF ++ + F+ L L L L L L+ A + L+SL VLN+
Sbjct: 151 ----SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 206
Query: 277 SVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIF-NVLTQLIVLDLSNN 327
S NN ++ + L+ + N I + + L L+L+ N
Sbjct: 207 SHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258
Score = 125 bits (315), Expect = 1e-31
Identities = 36/163 (22%), Positives = 67/163 (41%), Gaps = 5/163 (3%)
Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNS-SHVETIHNKTFNGLKELIILRLDDNRLT 864
L + V + F G L++L + S E F L+ L L L +L
Sbjct: 129 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 188
Query: 865 EIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSF---AVWHLSS 921
++ F L +L+ L + +N + + L L+VL N I + + H S
Sbjct: 189 QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPS 248
Query: 922 QIQSITLTSNPWSCDCDFTEKFRDYLQRSRSSVHDISQIRCMT 964
+ + LT N ++C C+ F +++ R + ++ ++ C T
Sbjct: 249 SLAFLNLTQNDFACTCEHQS-FLQWIKDQRQLLVEVERMECAT 290
Score = 102 bits (255), Expect = 1e-23
Identities = 40/157 (25%), Positives = 63/157 (40%), Gaps = 13/157 (8%)
Query: 100 QSSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISH 159
+ F +L +L L + G F GL L+ L + N+
Sbjct: 114 KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM-AGNSFQEN----FLP 168
Query: 160 NVFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARC 219
++FT+ L++L LDLS + L F L SL LN++ N ++ TF + +
Sbjct: 169 DIFTE-LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN---- 223
Query: 220 GINLRVLDLSNNSFDSLPAEGFSRL-SRLQELYLQGN 255
+L+VLD S N + + S L L L N
Sbjct: 224 --SLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258
Score = 95.1 bits (237), Expect = 3e-21
Identities = 39/177 (22%), Positives = 66/177 (37%), Gaps = 33/177 (18%)
Query: 769 CPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKK 828
CP+ C+C I C++ G +P IP AT L L+ N++ + F +
Sbjct: 1 CPSRCSCSG------TEIRCNSKGLT-SVPTGIPSSATRLELESNKLQSLPHGVFDKLTQ 53
Query: 829 LQILFLNSSHVETI-------------------HNK------TFNGLKELIILRLDDNRL 863
L L L+S+ + N F GL++L L + L
Sbjct: 54 LTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNL 113
Query: 864 TEIRGYE-FERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHL 919
++ + F L NL L + + N F L+ L+VL++ N + +
Sbjct: 114 KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 170
Score = 65.0 bits (159), Expect = 3e-11
Identities = 33/108 (30%), Positives = 49/108 (45%), Gaps = 10/108 (9%)
Query: 99 FQSSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSL-DI 157
FQ + P F L +L L + C++ LS +F L L+ L + HN + +
Sbjct: 162 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS-HN------NFFSL 214
Query: 158 SHNVFTDELQSLESLDLSMNSIWTLPDAIFCPLQ-SLSYLNLTQNKLS 204
+ L SL+ LD S+N I T SL++LNLTQN +
Sbjct: 215 DTFPYKC-LNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding;
HET: NAG; 2.00A {Anopheles gambiae}
Length = 317
Score = 192 bits (490), Expect = 1e-54
Identities = 66/321 (20%), Positives = 119/321 (37%), Gaps = 25/321 (7%)
Query: 222 NLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNL 281
++ ++++S A ++EL L GN L+ ++ L L +LNLS N L
Sbjct: 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL 70
Query: 282 VNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSG 341
L+ + L NN + L + L +NN ++ V+ + G
Sbjct: 71 YETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHAANNNISR--VSCSRGQG 121
Query: 342 LHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTF-ASLSNLHTLIMSN 400
+ +A NK+ L R+Q L L+ N+I++++ AS L L +
Sbjct: 122 KKN---IYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178
Query: 401 NKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRN 460
N + ++ L L L +N+L ++ +++ + L NKL I K LR
Sbjct: 179 NFIYDVKGQV--VFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEKALRF 235
Query: 461 LHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASN 520
+L+ DL N L + ++K +KL+
Sbjct: 236 SQNLEHFDLRGNGFHCGT---------LRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVP 286
Query: 521 KIQKVEAGTFDNNSNLVAIRL 541
+ A ++ A RL
Sbjct: 287 TLGHYGAYCCEDLPAPFADRL 307
Score = 190 bits (485), Expect = 6e-54
Identities = 63/329 (19%), Positives = 120/329 (36%), Gaps = 31/329 (9%)
Query: 166 LQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRV 225
+ ++ +S+ ++ ++ L+L+ N LS ++ + + L +
Sbjct: 9 GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFT------KLEL 62
Query: 226 LDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIP 285
L+LS+N LS L+ L L N + L S+ L+ + NN+ +
Sbjct: 63 LNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISRVS 115
Query: 286 PELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRL 345
K +YL NN I +L +++ LDL NE+ A + L
Sbjct: 116 CSRGQG---KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN-FAELAASSDTL 171
Query: 346 VVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKR 405
LN+ YN + + + +L+ L L +N++ + F S + + + + NNKL
Sbjct: 172 EHLNLQYNFIYDVKGQVV--FAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVL 228
Query: 406 IESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPK-VLRNLHSL 464
I +L L L N + +L+DF ++ + K ++ L
Sbjct: 229 I-EKALRFSQNLEHFDLRGNGF---------HCGTLRDFFSKNQRVQTVAKQTVKKLTGQ 278
Query: 465 KTLDLGDNLITEINNLSLNSLHQLAGLRL 493
+ + L RL
Sbjct: 279 NEEECTVPTLGHYGAYCCEDLPAPFADRL 307
Score = 183 bits (467), Expect = 2e-51
Identities = 52/314 (16%), Positives = 108/314 (34%), Gaps = 17/314 (5%)
Query: 241 FSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYL 300
+R + + + L ++ L+LS N L I L+ + L
Sbjct: 6 KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65
Query: 301 QNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDS 360
+N + L+ L LDL+NN + E + L+ A N ++++
Sbjct: 66 SSNVLYETLD--LESLSTLRTLDLNNNYVQE-------LLVGPSIETLHAANNNISRVSC 116
Query: 361 SIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDS-LTALSV 419
S + + ++L NN+I + S + L + N++ + L + L
Sbjct: 117 SRGQ---GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH 173
Query: 420 LSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINN 479
L+L N + ++ + L+ L+ NKL + ++ + + L +N + I
Sbjct: 174 LNLQYNFIYDVKGQVVF--AKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEK 231
Query: 480 LSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAI 539
+L L L N + F + +A ++K+ + +
Sbjct: 232 -ALRFSQNLEHFDLRGNGFHCGTLRDF-FSKNQRVQTVAKQTVKKLTGQNEEECTVPTLG 289
Query: 540 RLDGNYLTDIGGLF 553
D+ F
Sbjct: 290 HYGAYCCEDLPAPF 303
Score = 183 bits (466), Expect = 2e-51
Identities = 57/302 (18%), Positives = 113/302 (37%), Gaps = 17/302 (5%)
Query: 268 LNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNN 327
N + ++ ++L L + ++KE+ L N ++ ++ T+L +L+LS+N
Sbjct: 9 GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68
Query: 328 ELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTF 387
L E L L L++ N + +L ++ LH NN I + +
Sbjct: 69 VLYE----TLDLESLSTLRTLDLNNNYVQELLV-----GPSIETLHAANNNISRVSCSRG 119
Query: 388 ASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENAL-KNSTSLQDFHL 446
N++ ++NNK+ + + + L L NE++ + L +S +L+ +L
Sbjct: 120 QGKKNIY---LANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176
Query: 447 NGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVF 506
N + ++ LKTLDL N + + S + + L N + I K
Sbjct: 177 QYNFIYDVKG-QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVLIEKA-L 233
Query: 507 EKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISE 566
L +L N F + + V + + + G + + L
Sbjct: 234 RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQ-TVAKQTVKKLTGQNEEECTVPTLGHYG 292
Query: 567 NL 568
Sbjct: 293 AY 294
Score = 176 bits (449), Expect = 4e-49
Identities = 64/314 (20%), Positives = 118/314 (37%), Gaps = 16/314 (5%)
Query: 339 FSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIM 398
+R + + + + + +S+ + + ++ L L N + I A + L L +
Sbjct: 6 KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65
Query: 399 SNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVL 458
S+N L L+SL+ L L L+NN ++ L S++ H N ++ +
Sbjct: 66 SSNVLYETL--DLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISRVS--C 116
Query: 459 RNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKG-VFEKLSVLTILNL 517
K + L +N IT + +L ++ L L N I ++ + L LNL
Sbjct: 117 SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176
Query: 518 ASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYALI 577
N I V+ + L + L N L +G F + W+++ N L + AL
Sbjct: 177 QYNFIYDVKGQVV--FAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALR 234
Query: 578 P-ADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPH-SVENLFLTN 635
+L+ D+ GN R+ + + +LTG +V L
Sbjct: 235 FSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTV--AKQTVKKLTGQNEEECTVPTLGHYG 292
Query: 636 NLISKVQPYTFFMK 649
+ P F +
Sbjct: 293 AYCCEDLPAPFADR 306
Score = 172 bits (437), Expect = 1e-47
Identities = 60/326 (18%), Positives = 120/326 (36%), Gaps = 21/326 (6%)
Query: 360 SSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSV 419
I ++ R ++ + ++ ++ + S N+ L +S N L +I + L T L +
Sbjct: 3 HEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLEL 62
Query: 420 LSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINN 479
L+L +N L + L++ ++L+ LN N + E+ S++TL +N I+ ++
Sbjct: 63 LNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL----VGPSIETLHAANNNISRVSC 116
Query: 480 LSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNN-SNLVA 538
+ L N I+ + S + L+L N+I V + L
Sbjct: 117 SRGQGKKN---IYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH 173
Query: 539 IRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYALIP-ADLQWLDIHGNQISELGNY 597
+ L N++ D+ G L L++S N L + A + W+ + N++ +
Sbjct: 174 LNLQYNFIYDVKGQVV-FAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEK- 231
Query: 598 FEIESQLRLTYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDL 657
+ L +FD N ++ + F N + V T +
Sbjct: 232 -ALRFSQNLEHFDLRGNGFHCG-------TLRDFFSKNQRVQTVAKQTVKKLTGQNEEEC 283
Query: 658 VGNRLKNINQTALRISPLPSHKNIPD 683
L + P P +
Sbjct: 284 TVPTLGHYGAYCCEDLPAPFADRLIA 309
Score = 153 bits (389), Expect = 3e-41
Identities = 58/328 (17%), Positives = 115/328 (35%), Gaps = 49/328 (14%)
Query: 101 SSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHN 160
Q+ ++K+L + + +SA KL+ L ++S N
Sbjct: 23 KQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELL--------------NLSSN 68
Query: 161 VFTD-----ELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYD 215
V + L +L +LDL+ N + L S+ L+ N +S V+
Sbjct: 69 VLYETLDLESLSTLRTLDLNNNYVQELL-----VGPSIETLHAANNNISRVSCSRGQG-- 121
Query: 216 TARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDG-LNSLTVL 274
+ + L+NN L SR+Q L L+ N + + L ++L L
Sbjct: 122 -------KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL 174
Query: 275 NLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWV 334
NL N + ++ ++ LK + L +N + + P + + + L NN+L
Sbjct: 175 NLQYNFIYDVKGQVVFAK--LKTLDLSSNKLAFMGPEFQS-AAGVTWISLRNNKLVLI-- 229
Query: 335 NAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLH 394
L ++ N + L+ +N +++++ + T L+ +
Sbjct: 230 -EKALRFSQNLEHFDLRGNGFHCGT---------LRDFFSKNQRVQTVAKQTVKKLTGQN 279
Query: 395 TLIMSNNKLKRIESNSLDSLTALSVLSL 422
+ L + + L A L
Sbjct: 280 EEECTVPTLGHYGAYCCEDLPAPFADRL 307
Score = 82.0 bits (203), Expect = 8e-17
Identities = 24/156 (15%), Positives = 48/156 (30%), Gaps = 28/156 (17%)
Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
L+ N I V G + ++L ++ + + + + L L N +
Sbjct: 102 ETLHAANNNISRVSCSRGQG---KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT 158
Query: 866 I-RGYEFERLENLRELYLQYNKIIYISNRTFL-SLTHL--------------------KV 903
+ + L L LQYN I + + L L
Sbjct: 159 VNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTW 218
Query: 904 LQLDHNRITSF--AVWHLSSQIQSITLTSNPWSCDC 937
+ L +N++ A+ + ++ L N + C
Sbjct: 219 ISLRNNKLVLIEKALRFSQN-LEHFDLRGNGFHCGT 253
Score = 76.2 bits (188), Expect = 8e-15
Identities = 19/109 (17%), Positives = 37/109 (33%), Gaps = 7/109 (6%)
Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
+ + + + ++ L L+ + + I +L +L L N L E
Sbjct: 13 KIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE 72
Query: 866 IRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSF 914
+ E L LR L L N + + ++ L +N I+
Sbjct: 73 TL--DLESLSTLRTLDLNNNYVQELLV-----GPSIETLHAANNNISRV 114
Score = 73.1 bits (180), Expect = 7e-14
Identities = 30/145 (20%), Positives = 55/145 (37%), Gaps = 21/145 (14%)
Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
EL L GN + + + KL++L L+S+ + + L L L L++N + E
Sbjct: 37 KELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE 94
Query: 866 ----------------IRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHN 909
I R + + +YL NKI + + + ++ L L N
Sbjct: 95 LLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN 154
Query: 910 RITSF---AVWHLSSQIQSITLTSN 931
I + + S ++ + L N
Sbjct: 155 EIDTVNFAELAASSDTLEHLNLQYN 179
Score = 70.4 bits (173), Expect = 5e-13
Identities = 20/105 (19%), Positives = 40/105 (38%), Gaps = 5/105 (4%)
Query: 827 KKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNK 886
+ +I + S ++ + L L N L++I + L L L N
Sbjct: 10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69
Query: 887 IIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSSQIQSITLTSN 931
+ + SL+ L+ L L++N + V I+++ +N
Sbjct: 70 LYETLD--LESLSTLRTLDLNNNYVQELLV---GPSIETLHAANN 109
Score = 65.4 bits (160), Expect = 2e-11
Identities = 18/85 (21%), Positives = 34/85 (40%)
Query: 847 FNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQL 906
I ++ D+ L + + N++EL L N + IS T L++L L
Sbjct: 6 KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65
Query: 907 DHNRITSFAVWHLSSQIQSITLTSN 931
N + S ++++ L +N
Sbjct: 66 SSNVLYETLDLESLSTLRTLDLNNN 90
Score = 57.7 bits (140), Expect = 9e-09
Identities = 22/108 (20%), Positives = 38/108 (35%), Gaps = 5/108 (4%)
Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
L L N I V KL+ L L+S+ + + F + + L +N+L
Sbjct: 172 EHLNLQYNFIYDVKGQVVF--AKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRNNKLVL 228
Query: 866 IRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITS 913
I +NL L+ N + R F + +V + +
Sbjct: 229 IEK-ALRFSQNLEHFDLRGNGFHCGTLRDFF-SKNQRVQTVAKQTVKK 274
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto;
diacyl lipopeptide, innate immunity, Leu repeat, cell
membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG;
2.90A {Mus musculus}
Length = 562
Score = 199 bits (508), Expect = 2e-54
Identities = 102/524 (19%), Positives = 179/524 (34%), Gaps = 55/524 (10%)
Query: 222 NLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNL 281
+ L LS NS L S LS L+ L L N + L H L L++S N L
Sbjct: 53 RTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRL 112
Query: 282 VNIPPELFNQSRDLKEVYLQNNSINVLAP-GIFNVLTQLIVLDLSNNELTEEWVNAATFS 340
NI L+ + L N +VL F LT+L L LS + + ++ +
Sbjct: 113 QNISCCPMAS---LRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ--LDLLPVA 167
Query: 341 GLH-RLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMS 399
LH ++L++ + ++ + VLHL + S++ L L +S
Sbjct: 168 HLHLSCILLDLVSYHIKGGETESLQIPN-TTVLHLVFHPNSLFSVQVNMSVNALGHLQLS 226
Query: 400 NNKLKRIESNSLDS----------LTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGN 449
N KL L + L +++ ++ ++ ++ ++
Sbjct: 227 NIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNL 286
Query: 450 KLTEIPK------VLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISK 503
+TE L SL + + + + ++ L+ ++ I
Sbjct: 287 TITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHM 346
Query: 504 GVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLN 563
S T LN N L + L N L + + N+
Sbjct: 347 VCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNM---- 402
Query: 564 ISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNA 623
+ L+ LD+ N ++ + + SSN LT
Sbjct: 403 ---------------SSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRC 447
Query: 624 IPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHKNIPD 683
+P V+ L L NN I + P L +++ N+LK++ L S + I
Sbjct: 448 LPPKVKVLDLHNNRIMSI-PKDVTHLQALQELNVASNQLKSVPDGVF--DRLTSLQYI-- 502
Query: 684 FYIGENPFQCDCNM-----QWLQSYSVNKERNKPNLVDLDTVTC 722
++ +NP+ C C +W+ +S RN V D+ C
Sbjct: 503 -WLHDNPWDCTCPGIRYLSEWINKHS-GVVRNSAGSVAPDSAKC 544
Score = 173 bits (440), Expect = 8e-46
Identities = 89/466 (19%), Positives = 170/466 (36%), Gaps = 60/466 (12%)
Query: 151 STMSLDISHNVFT-------DELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKL 203
T +L +S N + L L L LS N I +L +F Q L YL+++ N+L
Sbjct: 53 RTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRL 112
Query: 204 SNVATFSFSNYDTARCGINLRVLDLSNNSFDSLP-AEGFSRLSRLQELYLQGNILTFLAD 262
N++ ++ LR LDLS N FD LP + F L++L L L L
Sbjct: 113 QNISCCPMAS---------LRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDL 163
Query: 263 HALDGLNSLTV-LNLSVNNLVNIPPELFN--QSRDLKEVYLQNNSINVLAPGIFNVLTQL 319
+ L+ + L+L ++ E + L V+ N+ +V N L L
Sbjct: 164 LPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHL 223
Query: 320 IVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKD-------------- 365
+ ++ N+ + + +LN+ + K
Sbjct: 224 QLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNI 283
Query: 366 --------------------LYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKR 405
L L + H++N ++ + ++ ++S +
Sbjct: 284 YNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPF 343
Query: 406 IESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLK 465
I S ++ + L+ N LQ L N L KV ++
Sbjct: 344 IHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMS 403
Query: 466 TLDLGDNLITEINNLSLNSLHQLAGLRLTENNISN--ISKGVFEKLSV-LTILNLASNKI 522
+L+ D + +N+ + + A + N+S+ ++ VF L + +L+L +N+I
Sbjct: 404 SLETLDVSLNSLNSHAYDRTCAWAE-SILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRI 462
Query: 523 QKVEAGTFDNNSNLVAIRLDGNYLTDI-GGLFPKLPNLVWLNISEN 567
+ + L + + N L + G+F +L +L ++ + +N
Sbjct: 463 MSIPKD-VTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507
Score = 166 bits (421), Expect = 2e-43
Identities = 86/477 (18%), Positives = 165/477 (34%), Gaps = 64/477 (13%)
Query: 113 DLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHNVFTDELQSLESL 172
K LS+ I L L +L+ L
Sbjct: 53 RTKALSLSQNSISELRMPDISFLSELRV-------------------------------L 81
Query: 173 DLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNS 232
LS N I +L +F Q L YL+++ N+L N++ + +LR LDLS N
Sbjct: 82 RLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCCPMA---------SLRHLDLSFND 132
Query: 233 FDSLP-AEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTV-LNLSVNNLVNIPPELFN 290
FD LP + F L++L L L L + L+ + L+L ++ E
Sbjct: 133 FDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQ 192
Query: 291 --QSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVL 348
+ L V+ N+ +V N L L + ++ N+ + + +L
Sbjct: 193 IPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLL 252
Query: 349 NIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIH----------RNTFASLSNLHTLIM 398
N+ + K +E I ++ + +L +L +
Sbjct: 253 NVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHV 312
Query: 399 SNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIP-KV 457
N + +++ L ++ +I + +S + N T+ +
Sbjct: 313 KNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQG 372
Query: 458 LRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKL----SVLT 513
L L+TL L N + ++L ++ L + ++++++ +++ +
Sbjct: 373 CSTLKRLQTLILQRNGLKNFFKVAL-MTKNMSSLETLDVSLNSLNSHAYDRTCAWAESIL 431
Query: 514 ILNLASNKIQKVEAGTFDN-NSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLL 569
+LNL+SN + F + + L N + I L L LN++ N L
Sbjct: 432 VLNLSSNMLTG---SVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQL 485
Score = 131 bits (331), Expect = 7e-32
Identities = 56/387 (14%), Positives = 120/387 (31%), Gaps = 41/387 (10%)
Query: 70 NSEIENTNFSIIQAQYTVRLRIECGDMLFFQSSLSPGSFQTLIDLKD--LSVEFCKIGNL 127
++ + + + + ++ + G ++L L + F
Sbjct: 155 AAKFRQLDLLPVAHLHLSCILLDLVS-----YHIKGGETESLQIPNTTVLHLVFHPNSLF 209
Query: 128 SAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHNVFTDELQSLESLDLSMNSIWTLPDAIF 187
S + L L L N + + ++ + L++++ I T
Sbjct: 210 SVQVNMSVNALGHLQLS--NIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSV 267
Query: 188 CPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRL 247
Q + + N L ++ + L L
Sbjct: 268 KLFQFFWPRPVEYLNIYN--------------------LTITERIDREEFTYSETALKSL 307
Query: 248 QELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINV 307
+++ + F + + + LS+++ I + N
Sbjct: 308 MIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTD 367
Query: 308 LAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLY 367
+ L +L L L N L + A + L L+ +N L+S +
Sbjct: 368 SVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLD---VSLNSLNSHAYDRTC 424
Query: 368 R----LQVLHLENNQIESIHRNTFASL-SNLHTLIMSNNKLKRIESNSLDSLTALSVLSL 422
+ VL+L +N + + F L + L + NN++ I + L AL L++
Sbjct: 425 AWAESILVLNLSSNM---LTGSVFRCLPPKVKVLDLHNNRIMSI-PKDVTHLQALQELNV 480
Query: 423 DNNELEYIEENALKNSTSLQDFHLNGN 449
+N+L+ + + TSLQ L+ N
Sbjct: 481 ASNQLKSVPDGVFDRLTSLQYIWLHDN 507
Score = 122 bits (308), Expect = 6e-29
Identities = 95/549 (17%), Positives = 172/549 (31%), Gaps = 86/549 (15%)
Query: 445 HLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKG 504
+ LT +PK L K L L N I+E+ ++ L +L LRL+ N I ++
Sbjct: 37 DYSNRNLTHVPKDL--PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFH 94
Query: 505 VFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDI--GGLFPKLPNLVWL 562
VF L L+++ N++Q + + ++L + L N + F L L +L
Sbjct: 95 VFLFNQDLEYLDVSHNRLQNI---SCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFL 151
Query: 563 NISENLLEWFD---YALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTEL 619
+S D A + LD+ I + + N L +
Sbjct: 152 GLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSV 211
Query: 620 TGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHK 679
N +++ +L L+N ++ + + + + +
Sbjct: 212 QVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQ 271
Query: 680 NIPDFYIGENPFQCDCNMQWLQSYSVNKERNKPNLVDLDTVTCKLLYNRANPAILLKEAH 739
+ + + +R + + + + + + + KEA
Sbjct: 272 FFWPRPVEYLNIY-NLTITERI------DREEFTYSETALKSLMIEHVKNQVFLFSKEAL 324
Query: 740 SNQFLCEYETNCAPLCHCCDFDACDCEMTCPNNCTCYHDVSWEANVIDCSTGGYDNQLPP 799
+ F E N L ++ H V P
Sbjct: 325 YSVFA---EMNIKMLSI--------------SDTPFIHMV------------------CP 349
Query: 800 RIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLD 859
P T L N K+LQ L L + ++ K K + L
Sbjct: 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNF-FKVALMTKNMSSLETL 408
Query: 860 DNRLTEIRGYEFERL----ENLRELYLQYNKIIYISNRTFLSLT-HLKVLQLDHNRITSF 914
D L + + ++R E++ L L N ++ F L +KVL L +NRI S
Sbjct: 409 DVSLNSLNSHAYDRTCAWAESILVLNLSSNM---LTGSVFRCLPPKVKVLDLHNNRIMSI 465
Query: 915 --AVWHLSS-----------------------QIQSITLTSNPWSCDCDFTEKFRDYLQR 949
V HL + +Q I L NPW C C +++ +
Sbjct: 466 PKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINK 525
Query: 950 SRSSVHDIS 958
V + +
Sbjct: 526 HSGVVRNSA 534
Score = 76.1 bits (187), Expect = 3e-14
Identities = 31/149 (20%), Positives = 58/149 (38%), Gaps = 5/149 (3%)
Query: 784 NVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIH 843
+++D S +P +P L L N I + +L++L L+ + + ++
Sbjct: 34 SMVDYSNRNLT-HVPKDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLD 92
Query: 844 NKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYI-SNRTFLSLTHLK 902
F ++L L + NRL I + +LR L L +N + + F +LT L
Sbjct: 93 FHVFLFNQDLEYLDVSHNRLQNI---SCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLT 149
Query: 903 VLQLDHNRITSFAVWHLSSQIQSITLTSN 931
L L + + ++ S L
Sbjct: 150 FLGLSAAKFRQLDLLPVAHLHLSCILLDL 178
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity,
immune response, leucine-rich repeat, glycoprotein,
transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Length = 178
Score = 187 bits (475), Expect = 2e-54
Identities = 59/177 (33%), Positives = 84/177 (47%), Gaps = 16/177 (9%)
Query: 1057 MRVWFHSRFGVRLFY-------KSSEIEMDDRDKLFDAFVSYSSKDEAFVAEELAPILEN 1109
M H GV L + E R+ F AF+SYS D +V EL P LE
Sbjct: 1 MHHHHHHSSGVDLGTENLYFQSMKTTQEQLKRNVRFHAFISYSEHDSLWVKNELIPNLEK 60
Query: 1110 GDPAYKLCLHYREFPVGGYIGDTIVQAVESSRRTIMVLSENFIKSEWCRYEFKSAHHQVL 1169
D + +CL+ F G I + IV +E S ++I VLS NF+++EWC YEF AHH +
Sbjct: 61 EDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEWCHYEFYFAHHNLF 120
Query: 1170 -RGKKRLIVILLGEVPQKDL---DPDIRLYLKSNTYLQWGDK-----LFWEKLKFAL 1217
+I+ILL +P + ++ L+ YL+W LFW L+ A+
Sbjct: 121 HENSDHIILILLEPIPFYCIPTRYHKLKALLEKKAYLEWPKDRRKCGLFWANLRAAI 177
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder,
asparagine ladder, virulence factor, solenoid, cell
WALL; 2.70A {Listeria monocytogenes}
Length = 457
Score = 192 bits (491), Expect = 4e-53
Identities = 88/468 (18%), Positives = 166/468 (35%), Gaps = 48/468 (10%)
Query: 169 LESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDL 228
S + + L +L+ L+ + ++++ L L
Sbjct: 20 FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTGIEKLT--------GLTKLIC 71
Query: 229 SNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPEL 288
++N+ +L S+ + L L N LT L + L LT LN N L +
Sbjct: 72 TSNNITTLD---LSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTNKLTKLD--- 122
Query: 289 FNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVL 348
+Q+ L + N++ + + TQL LD N+ + + +L L
Sbjct: 123 VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL----DVTPQTQLTTL 175
Query: 349 NIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIES 408
+ ++NK+ +LD L L+ + N I + L L S+NKL I+
Sbjct: 176 DCSFNKITELD---VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEID- 228
Query: 409 NSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLD 468
+ LT L+ N L ++ + L L H L EI L + L
Sbjct: 229 --VTPLTQLTYFDCSVNPLTELDVSTLSK---LTTLHCIQTDLLEID--LTHNTQLIYFQ 281
Query: 469 LGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAG 528
+I L + QL L I+ + + L L L + ++ +++
Sbjct: 282 AEGC--RKIKELDVTHNTQLYLLDCQAAGITELD---LSQNPKLVYLYLNNTELTELD-- 334
Query: 529 TFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHG 588
+N+ L ++ ++ D + K+P L +E + + + +
Sbjct: 335 -VSHNTKLKSLSCVNAHIQDFSSV-GKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSP 392
Query: 589 NQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPHSVENLFLTNN 636
+ + + GN IE Y D ++N +T + +V F + N
Sbjct: 393 DLLDQFGNPMNIEPGDGGVY-DQATNTITWENLSTDNPAVTYTFTSEN 439
Score = 148 bits (376), Expect = 3e-38
Identities = 81/423 (19%), Positives = 143/423 (33%), Gaps = 71/423 (16%)
Query: 101 SSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHN 160
+ S + L L L I +++ L L L ++N +LD+S
Sbjct: 31 QATDTISEEQLATLTSLDCHNSSITDMTG--IEKLTGLTKLICTSNNIT----TLDLSQ- 83
Query: 161 VFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCG 220
+L L N + L PL L+YLN NKL+ +
Sbjct: 84 -----NTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTNKLTKLDVSQNPL------- 128
Query: 221 INLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNN 280
L L+ + N+ + S ++L EL N D + LT L+ S N
Sbjct: 129 --LTYLNCARNTLTEID---VSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNK 181
Query: 281 LVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFS 340
+ + +Q++ L + N+I L N QL LD S+N+LTE +
Sbjct: 182 ITELD---VSQNKLLNRLNCDTNNITKLD---LNQNIQLTFLDCSSNKLTE-----IDVT 230
Query: 341 GLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESI------------------ 382
L +L + + N + +LD S L LH + I
Sbjct: 231 PLTQLTYFDCSVNPLTELDVSTLSKL---TTLHCIQTDLLEIDLTHNTQLIYFQAEGCRK 287
Query: 383 -HRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSL 441
+ L+ L + ++ L L L L+N EL ++ + ++T L
Sbjct: 288 IKELDVTHNTQLYLLDCQAAGITELD---LSQNPKLVYLYLNNTELTELD---VSHNTKL 341
Query: 442 QDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEI--NNLSLNSLHQLAGLRLTENNIS 499
+ + + + + +L + + L+ NSL L + +
Sbjct: 342 KSLSCVNAHIQDFS-SVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGN 400
Query: 500 NIS 502
++
Sbjct: 401 PMN 403
Score = 146 bits (371), Expect = 2e-37
Identities = 75/391 (19%), Positives = 139/391 (35%), Gaps = 39/391 (9%)
Query: 279 NNLVNIPPELFNQS---RDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVN 335
N L + FN + + L L LD N+ +T +
Sbjct: 1 NTLKAGQTQSFNDWFPDDNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT----D 56
Query: 336 AATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHT 395
L L L N + LD L L ++N++ ++ L+ L
Sbjct: 57 MTGIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKLTNLD---VTPLTKLTY 110
Query: 396 LIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIP 455
L NKL ++ + L+ L+ N L I+ + ++T L + + NK
Sbjct: 111 LNCDTNKLTKL---DVSQNPLLTYLNCARNTLTEID---VSHNTQLTELDCHLNKKITKL 164
Query: 456 KVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTIL 515
+ L TLD N ITE++ L++L NNI+ + + LT L
Sbjct: 165 D-VTPQTQLTTLDCSFNKITELDVSQNKLLNRL---NCDTNNITKLD---LNQNIQLTFL 217
Query: 516 NLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYA 575
+ +SNK+ +++ + L N LT++ L L L+ + L D
Sbjct: 218 DCSSNKLTEID---VTPLTQLTYFDCSVNPLTELD--VSTLSKLTTLHCIQTDLLEID-L 271
Query: 576 LIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPHSVENLFLTN 635
L + G + + + + +L D + +TEL + P + L+L N
Sbjct: 272 THNTQLIYFQAEGCRKIKELD---VTHNTQLYLLDCQAAGITELDLSQNP-KLVYLYLNN 327
Query: 636 NLISKVQPYTFFMKPNLTRVDLVGNRLKNIN 666
++++ L + V +++ +
Sbjct: 328 TELTELDVSHN---TKLKSLSCVNAHIQDFS 355
Score = 53.5 bits (129), Expect = 3e-07
Identities = 30/136 (22%), Positives = 43/136 (31%), Gaps = 20/136 (14%)
Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
T L D N++ + KL L +++ + + + L L N LTE
Sbjct: 88 TYLACDSNKLT---NLDVTPLTKLTYLNCDTNKLTKL---DVSQNPLLTYLNCARNTLTE 141
Query: 866 IRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSS---- 921
I + L EL NK I + T L L N+IT V
Sbjct: 142 I---DVSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKITELDVSQNKLLNRL 196
Query: 922 -----QIQSITLTSNP 932
I + L N
Sbjct: 197 NCDTNNITKLDLNQNI 212
Score = 53.2 bits (128), Expect = 4e-07
Identities = 23/127 (18%), Positives = 41/127 (32%), Gaps = 12/127 (9%)
Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
T L N + + +L L + + I +L L N++TE
Sbjct: 130 TYLNCARNTLTEIDVSHN---TQLTELDCHLNKK--ITKLDVTPQTQLTTLDCSFNKITE 184
Query: 866 IRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSSQIQS 925
+ + + + L L N I + L L N++T V L+ +
Sbjct: 185 L---DVSQNKLLNRLNCDTNNITKLD---LNQNIQLTFLDCSSNKLTEIDVTPLTQ-LTY 237
Query: 926 ITLTSNP 932
+ NP
Sbjct: 238 FDCSVNP 244
Score = 52.0 bits (125), Expect = 9e-07
Identities = 25/137 (18%), Positives = 47/137 (34%), Gaps = 22/137 (16%)
Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
T L N+I + K L L +++++ + N +L L N+LTE
Sbjct: 173 TTLDCSFNKITEL---DVSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE 226
Query: 866 IRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSS---- 921
I + L L N + + +L+ L L + + H +
Sbjct: 227 I---DVTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYF 280
Query: 922 ------QIQSITLTSNP 932
+I+ + +T N
Sbjct: 281 QAEGCRKIKELDVTHNT 297
Score = 51.2 bits (123), Expect = 2e-06
Identities = 18/126 (14%), Positives = 37/126 (29%), Gaps = 11/126 (8%)
Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
T L+ + Q+++ + I +L +L +TE
Sbjct: 257 TTLHCIQTDL-----LEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITE 311
Query: 866 IRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSSQIQS 925
+ + + L LYL ++ + T LK L + I F+ + +
Sbjct: 312 L---DLSQNPKLVYLYLNNTELTELD---VSHNTKLKSLSCVNAHIQDFSSVGKIPALNN 365
Query: 926 ITLTSN 931
Sbjct: 366 NFEAEG 371
Score = 48.5 bits (116), Expect = 1e-05
Identities = 23/115 (20%), Positives = 43/115 (37%), Gaps = 17/115 (14%)
Query: 827 KKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNK 886
+TI + L L L ++ +T++ G E+L L +L N
Sbjct: 21 ASEVAAAFEMQATDTI---SEEQLATLTSLDCHNSSITDMTG--IEKLTGLTKLICTSNN 75
Query: 887 IIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSS---------QIQSITLTSNP 932
I + T+L L D N++T+ V L+ ++ + ++ NP
Sbjct: 76 ITTLD---LSQNTNLTYLACDSNKLTNLDVTPLTKLTYLNCDTNKLTKLDVSQNP 127
Score = 47.4 bits (113), Expect = 2e-05
Identities = 19/129 (14%), Positives = 37/129 (28%), Gaps = 12/129 (9%)
Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
T N + + + KL L + + I L +
Sbjct: 236 TYFDCSVNPLTELDVSTL---SKLTTLHCIQTDLLEIDLTHNTQLIYF-----QAEGCRK 287
Query: 866 IRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSSQIQS 925
I+ + L L Q I + L L L++ +T V H + ++S
Sbjct: 288 IKELDVTHNTQLYLLDCQAAGITELD---LSQNPKLVYLYLNNTELTELDVSHNTK-LKS 343
Query: 926 ITLTSNPWS 934
++ +
Sbjct: 344 LSCVNAHIQ 352
Score = 45.8 bits (109), Expect = 7e-05
Identities = 16/131 (12%), Positives = 43/131 (32%), Gaps = 8/131 (6%)
Query: 808 LYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIR 867
+Y + +L +L ++ + + + +L+ L L++ LTE+
Sbjct: 278 IYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITEL---DLSQNPKLVYLYLNNTELTEL- 333
Query: 868 GYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSSQIQSIT 927
+ L+ L I S+ + L + + L++ +I
Sbjct: 334 --DVSHNTKLKSLSCVNAHIQDFSS--VGKIPALNNNFEAEGQTITMPKETLTNNSLTIA 389
Query: 928 LTSNPWSCDCD 938
++ + +
Sbjct: 390 VSPDLLDQFGN 400
Score = 37.7 bits (88), Expect = 0.025
Identities = 14/113 (12%), Positives = 34/113 (30%), Gaps = 13/113 (11%)
Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
L I + KL L+LN++ + + + +L L + + +
Sbjct: 300 YLLDCQAAGITEL---DLSQNPKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQD 353
Query: 866 IRGYEFERLENLRELYLQYNKII-----YISNRTFLSLTHLKVLQLDHNRITS 913
++ L + + I ++N + +L N +
Sbjct: 354 FS--SVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNI 404
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2,
lipopeptide, innate immunity, glycoprotein, immune RES
inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Length = 353
Score = 188 bits (480), Expect = 7e-53
Identities = 57/282 (20%), Positives = 120/282 (42%), Gaps = 13/282 (4%)
Query: 225 VLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNI 284
+ S+ S +S+P+ + + L L N +T++++ L +L L L+ N + I
Sbjct: 35 ICKGSSGSLNSIPSGLTEAV---KSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTI 91
Query: 285 PPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHR 344
+ F+ L+ + L N ++ L+ F L+ L L+L N + FS L +
Sbjct: 92 EEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTL-GETSLFSHLTK 150
Query: 345 LVVLNIAYN-KMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKL 403
L +L + K+ F L L+ L ++ + ++S + S+ N+ LI+ +
Sbjct: 151 LQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH 210
Query: 404 KRIESNSLDSLTALSVLSLDNNELEY--------IEENALKNSTSLQDFHLNGNKLTEIP 455
+ +D +++ L L + +L+ E N+L + ++ + L ++
Sbjct: 211 ILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVM 270
Query: 456 KVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENN 497
K+L + L L+ N + + + + L L + L N
Sbjct: 271 KLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNP 312
Score = 173 bits (441), Expect = 1e-47
Identities = 55/292 (18%), Positives = 119/292 (40%), Gaps = 22/292 (7%)
Query: 171 SLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSN 230
S S+ ++P + +++ L+L+ N+++ ++ +NL+ L L++
Sbjct: 35 ICKGSSGSLNSIPSGLT---EAVKSLDLSNNRITYISNSDLQRC------VNLQALVLTS 85
Query: 231 NSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPE-LF 289
N +++ + FS L L+ L L N L+ L+ L+SLT LNL N + LF
Sbjct: 86 NGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLF 145
Query: 290 NQSRDLKEVYLQNN-SINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVL 348
+ L+ + + N + + F LT L L++ ++L + + + L
Sbjct: 146 SHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS--YEPKSLKSIQNVSHL 203
Query: 349 NIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRN--------TFASLSNLHTLIMSN 400
+ + L ++ L L + +++ H + + + +++
Sbjct: 204 ILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITD 263
Query: 401 NKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLT 452
L ++ L+ ++ L L N+L+ + + TSLQ L+ N
Sbjct: 264 ESLFQVMKL-LNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314
Score = 171 bits (435), Expect = 5e-47
Identities = 58/267 (21%), Positives = 110/267 (41%), Gaps = 20/267 (7%)
Query: 151 STMSLDISHNVFT-------DELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKL 203
+ SLD+S+N T +L++L L+ N I T+ + F L SL +L+L+ N L
Sbjct: 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 112
Query: 204 SNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEG-FSRLSRLQELYLQGNI-LTFLA 261
SN+++ F +L L+L N + +L FS L++LQ L + T +
Sbjct: 113 SNLSSSWFKPL------SSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQ 166
Query: 262 DHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIV 321
GL L L + ++L + P+ +++ + L +L +V + +
Sbjct: 167 RKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVEC 226
Query: 322 LDLSNNELTEEWVNAAT---FSGLHRLVVLNIAYNKMNKLDS--SIFKDLYRLQVLHLEN 376
L+L + +L + + + L + L + + L L
Sbjct: 227 LELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSR 286
Query: 377 NQIESIHRNTFASLSNLHTLIMSNNKL 403
NQ++S+ F L++L + + N
Sbjct: 287 NQLKSVPDGIFDRLTSLQKIWLHTNPW 313
Score = 165 bits (420), Expect = 6e-45
Identities = 68/332 (20%), Positives = 125/332 (37%), Gaps = 60/332 (18%)
Query: 268 LNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNN 327
+ + S +L +IP L +K + L NN I ++ L L L++N
Sbjct: 30 CDRNGICKGSSGSLNSIPSGLTE---AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN 86
Query: 328 ELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESI-HRNT 386
+ + +FS L L L+++YN ++ L SS FK L L L+L N +++ +
Sbjct: 87 GINT--IEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSL 144
Query: 387 FASLSNLHTLIMSNN-KLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFH 445
F+ L+ L L + N +I+ LT L L +D ++L+ E +LK+ ++
Sbjct: 145 FSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLI 204
Query: 446 LNGNKLTEIPK-VLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKG 504
L+ + + + + S++ L+L D L + S +S G
Sbjct: 205 LHMKQHILLLEIFVDVTSSVECLELRDT-------------------DLDTFHFSELSTG 245
Query: 505 VFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNI 564
L +++ L + L ++ L+ L
Sbjct: 246 ETNSLIKKFTFRN---------------------VKITDESLFQVMKLLNQISGLLELEF 284
Query: 565 SENLLEWFDYALIPAD-------LQWLDIHGN 589
S N L+ +P LQ + +H N
Sbjct: 285 SRNQLK-----SVPDGIFDRLTSLQKIWLHTN 311
Score = 165 bits (419), Expect = 9e-45
Identities = 64/350 (18%), Positives = 125/350 (35%), Gaps = 74/350 (21%)
Query: 369 LQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELE 428
++ L L NN+I I + NL L++++N + IE +S SL +L L L N L
Sbjct: 54 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113
Query: 429 YIEENALKNSTSLQDFHLNGNKLTEIPK--VLRNLHSLKTLDLGDNLITEINNLSLNSLH 486
+ + K +SL +L GN + + + +L L+ L +G+
Sbjct: 114 NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNM-------------- 159
Query: 487 QLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYL 546
+ + I + F L+ L L + ++ +Q E + + N+ + L
Sbjct: 160 ---------DTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH 210
Query: 547 TDI-GGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLR 605
+ ++ L +L+ D+ SEL
Sbjct: 211 ILLLEIFVDVTSSVECL-----------------ELRDTDLDTFHFSEL----------- 242
Query: 606 LTYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNI 665
+N L + + N+ +T+ + +V L ++ N+LK++
Sbjct: 243 ---STGETNSLIKKF------TFRNVKITDESLFQV-MKLLNQISGLLELEFSRNQLKSV 292
Query: 666 NQTALRISPLPSHKNIPDFYIGENPFQCDCNM-----QWLQSYSVNKERN 710
L S + I ++ NP+ C C +WL S ++ +
Sbjct: 293 PDGIF--DRLTSLQKI---WLHTNPWDCSCPRIDYLSRWLNKNSQKEQGS 337
Score = 130 bits (329), Expect = 7e-33
Identities = 46/236 (19%), Positives = 83/236 (35%), Gaps = 22/236 (9%)
Query: 101 SSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHN 160
+++ SF +L L+ L + + + NLS+ F+ L L L L + T +
Sbjct: 89 NTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL--LGNPYKT----LGET 142
Query: 161 VFTDELQSLESLDLSMN-SIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARC 219
L L+ L + + + F L L L + + L + S +
Sbjct: 143 SLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQ---- 198
Query: 220 GINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTF--------LADHALDGLNSL 271
N+ L L L S ++ L L+ L ++L +
Sbjct: 199 --NVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTF 256
Query: 272 TVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNN 327
+ ++ +L + L S L E+ N + + GIF+ LT L + L N
Sbjct: 257 RNVKITDESLFQVMKLLNQISG-LLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTN 311
Score = 102 bits (256), Expect = 2e-23
Identities = 40/199 (20%), Positives = 67/199 (33%), Gaps = 40/199 (20%)
Query: 762 ACDCEMTCPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSH 821
+ ++C N C S+G ++ +P + L L NRI + +
Sbjct: 23 SNQASLSCDRNGIC-----------KGSSGSLNS-IPSGLTEAVKSLDLSNNRITYISNS 70
Query: 822 SFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELY 881
LQ L L S+ + TI +F+ L L L L N L+ + F+ L +L L
Sbjct: 71 DLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLN 130
Query: 882 LQYNKII--------------------------YISNRTFLSLTHLKVLQLDHNRITSFA 915
L N I + F LT L+ L++D + + S+
Sbjct: 131 LLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYE 190
Query: 916 --VWHLSSQIQSITLTSNP 932
+ + L
Sbjct: 191 PKSLKSIQNVSHLILHMKQ 209
Score = 92.9 bits (231), Expect = 4e-20
Identities = 29/183 (15%), Positives = 56/183 (30%), Gaps = 34/183 (18%)
Query: 101 SSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHN 160
+ + F L L++L ++ + + S + ++ +
Sbjct: 163 TKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSH-------------------- 202
Query: 161 VFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSN--YDTAR 218
L L M L + S+ L L L S ++
Sbjct: 203 -----------LILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLI 251
Query: 219 CGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSV 278
R + +++ S + + +++S L EL N L + D D L SL + L
Sbjct: 252 KKFTFRNVKITDESLFQVM-KLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHT 310
Query: 279 NNL 281
N
Sbjct: 311 NPW 313
Score = 82.1 bits (203), Expect = 1e-16
Identities = 29/188 (15%), Positives = 63/188 (33%), Gaps = 37/188 (19%)
Query: 809 YLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRG 868
+ + + F G L+ L +++S +++ K+ ++ + L L + +
Sbjct: 156 VGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLE 215
Query: 869 YEFERLENLRELYLQYNKIIY-----ISNRTFLSL------------------------- 898
+ ++ L L+ + +S SL
Sbjct: 216 IFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQ 275
Query: 899 -THLKVLQLDHNRITSF---AVWHLSSQIQSITLTSNPWSCDCDFTEKFRDYLQRSRSSV 954
+ L L+ N++ S L+S +Q I L +NPW C C + +L ++
Sbjct: 276 ISGLLELEFSRNQLKSVPDGIFDRLTS-LQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKE 334
Query: 955 HDISQIRC 962
+C
Sbjct: 335 QG--SAKC 340
Score = 41.3 bits (97), Expect = 0.002
Identities = 18/95 (18%), Positives = 41/95 (43%), Gaps = 23/95 (24%)
Query: 577 IPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPHSVENLFLTNN 636
+ ++ LD+ N+I+ + S++ L +++ L LT+N
Sbjct: 50 LTEAVKSLDLSNNRITYI-----------------SNSDLQRCV------NLQALVLTSN 86
Query: 637 LISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALR 671
I+ ++ +F +L +DL N L N++ + +
Sbjct: 87 GINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFK 121
Score = 40.5 bits (95), Expect = 0.003
Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Query: 610 DASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTA 669
SS L + + +V++L L+NN I+ + NL + L N + I + +
Sbjct: 37 KGSSGSLNSIPSG-LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDS 95
Query: 670 LR 671
Sbjct: 96 FS 97
>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human,
TIR domain, TOLL like receptor adaptor domain, innate
immune signaling; NMR {Homo sapiens} PDB: 2z5v_A
Length = 160
Score = 178 bits (454), Expect = 6e-52
Identities = 37/164 (22%), Positives = 72/164 (43%), Gaps = 12/164 (7%)
Query: 1071 YKSSEIEMDDRDKLFDAFVSYSSKDEAFVAEELAPILENGDPAYKLCLHYREFPVGGYIG 1130
+ + + + FDAF+ Y D FV +E+ LE + KLC+ R+ G +
Sbjct: 3 ITTLDDPLGHMPERFDAFICYCPSDIQFV-QEMIRQLEQTNYRLKLCVSDRDVLPGTCVW 61
Query: 1131 DTIVQAVES-SRRTIMVLSENFIKSEWCRYEFKSAHHQVLRGKK-RLIVILLGEVPQKDL 1188
+ +E RR ++V+S+++++S+ C ++ K A + RLI I K +
Sbjct: 62 SIASELIEKRCRRMVVVVSDDYLQSKECDFQTKFALSLSPGAHQKRLIPIKY-----KAM 116
Query: 1189 DPDIRLYLKSNTYLQWGD----KLFWEKLKFALPDVPNNQRNNN 1228
+ L+ T + + FW +L AL + +++
Sbjct: 117 KKEFPSILRFITVCDYTNPCTKSWFWTRLAKALSLPLEHHHHHH 160
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A
{Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Length = 149
Score = 177 bits (451), Expect = 9e-52
Identities = 54/147 (36%), Positives = 84/147 (57%), Gaps = 9/147 (6%)
Query: 1081 RDKLFDAFVSYSSKDEAFVAEELAPILENGDPAYKLCLHYREFPVGGYIGDTIVQAVESS 1140
R+ +DAFVSYS +D +V + LEN +P +KL LH R+F G +I D I+ ++E S
Sbjct: 2 RNIXYDAFVSYSERDAYWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKS 61
Query: 1141 RRTIMVLSENFIKSEWCRYEFKSAHHQVL-RGKKRLIVILLGEVPQKDLDP---DIRLYL 1196
+T+ VLSENF+KSEW +YE +H ++ I+ILL + +K + +R +
Sbjct: 62 HKTVFVLSENFVKSEWXKYELDFSHFRLFDENNDAAILILLEPIEKKAIPQRFXKLRKIM 121
Query: 1197 KSNTYLQW-----GDKLFWEKLKFALP 1218
+ TYL+W + FW L+ A+
Sbjct: 122 NTKTYLEWPMDEAQREGFWVNLRAAIK 148
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition,
OMGP, MAG, NOGO- signal transduction, neuronal
regeneration, ligand binding; HET: NDG MAN NAG BMA;
1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Length = 285
Score = 181 bits (462), Expect = 3e-51
Identities = 58/204 (28%), Positives = 102/204 (50%), Gaps = 2/204 (0%)
Query: 270 SLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNEL 329
+ + L N + ++P F R+L ++L +N + + F L L LDLS+N
Sbjct: 33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92
Query: 330 TEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFAS 389
V+ ATF GL RL L++ + +L +F+ L LQ L+L++N ++++ +TF
Sbjct: 93 LRS-VDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151
Query: 390 LSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGN 449
L NL L + N++ + + L +L L L N + ++ +A ++ L +L N
Sbjct: 152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211
Query: 450 KLTEIPK-VLRNLHSLKTLDLGDN 472
L+ +P L L +L+ L L DN
Sbjct: 212 NLSALPTEALAPLRALQYLRLNDN 235
Score = 174 bits (442), Expect = 1e-48
Identities = 53/202 (26%), Positives = 89/202 (44%), Gaps = 3/202 (1%)
Query: 369 LQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNE-L 427
Q + L N+I + +F + NL L + +N L RI++ + L L L L +N L
Sbjct: 34 SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93
Query: 428 EYIEENALKNSTSLQDFHLNGNKLTEIPK-VLRNLHSLKTLDLGDNLITEINNLSLNSLH 486
++ L HL+ L E+ + R L +L+ L L DN + + + + L
Sbjct: 94 RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLG 153
Query: 487 QLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYL 546
L L L N IS++ + F L L L L N++ V F + L+ + L N L
Sbjct: 154 NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL 213
Query: 547 TDI-GGLFPKLPNLVWLNISEN 567
+ + L L +L +++N
Sbjct: 214 SALPTEALAPLRALQYLRLNDN 235
Score = 167 bits (425), Expect = 2e-46
Identities = 60/211 (28%), Positives = 91/211 (43%), Gaps = 9/211 (4%)
Query: 168 SLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLD 227
+ + + L N I +P A F ++L+ L L N L+ + +F+ L LD
Sbjct: 33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLA------LLEQLD 86
Query: 228 LSNNS-FDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPP 286
LS+N+ S+ F L RL L+L L L GL +L L L N L +P
Sbjct: 87 LSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD 146
Query: 287 ELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLV 346
+ F +L ++L N I+ + F L L L L N + V+ F L RL+
Sbjct: 147 DTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH--VHPHAFRDLGRLM 204
Query: 347 VLNIAYNKMNKLDSSIFKDLYRLQVLHLENN 377
L + N ++ L + L LQ L L +N
Sbjct: 205 TLYLFANNLSALPTEALAPLRALQYLRLNDN 235
Score = 154 bits (391), Expect = 8e-42
Identities = 56/203 (27%), Positives = 80/203 (39%), Gaps = 12/203 (5%)
Query: 101 SSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHN 160
S + SF+ +L L + + + A +F GL L+ L L N + +
Sbjct: 45 SHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS-DNAQLRS----VDPA 99
Query: 161 VFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCG 220
F L L +L L + L +F L +L YL L N L + +F +
Sbjct: 100 TFHG-LGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDL------ 152
Query: 221 INLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNN 280
NL L L N S+P F L L L L N + + HA L L L L NN
Sbjct: 153 GNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN 212
Query: 281 LVNIPPELFNQSRDLKEVYLQNN 303
L +P E R L+ + L +N
Sbjct: 213 LSALPTEALAPLRALQYLRLNDN 235
Score = 151 bits (384), Expect = 8e-41
Identities = 63/217 (29%), Positives = 96/217 (44%), Gaps = 16/217 (7%)
Query: 113 DLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSL-DISHNVFTDELQSLES 171
+ + + +I ++ A SFR R L L L N L I FT L LE
Sbjct: 33 ASQRIFLHGNRISHVPAASFRACRNLTILWLH-SN------VLARIDAAAFTG-LALLEQ 84
Query: 172 LDLSMNS-IWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSN 230
LDLS N+ + ++ A F L L L+L + L + F L+ L L +
Sbjct: 85 LDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLA------ALQYLYLQD 138
Query: 231 NSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFN 290
N+ +LP + F L L L+L GN ++ + + A GL+SL L L N + ++ P F
Sbjct: 139 NALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFR 198
Query: 291 QSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNN 327
L +YL N+++ L L L L L++N
Sbjct: 199 DLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235
Score = 150 bits (381), Expect = 2e-40
Identities = 71/312 (22%), Positives = 116/312 (37%), Gaps = 60/312 (19%)
Query: 447 NGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVF 506
L +P + + + + L N I+ + S + L L L N ++ I F
Sbjct: 19 PQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAF 76
Query: 507 EKLSVLTILNLASN-KIQKVEAGTFDNNSNLVAIRLDGNYLTDI-GGLFPKLPNLVWLNI 564
L++L L+L+ N +++ V+ TF L + LD L ++ GLF L L +L +
Sbjct: 77 TGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYL 136
Query: 565 SENLLEWFDYALIPAD-------LQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLT 617
+N L+ +P D L L +HGN+IS + F L
Sbjct: 137 QDNALQ-----ALPDDTFRDLGNLTHLFLHGNRISSVPERA----------FR----GLH 177
Query: 618 ELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPS 677
L L L N ++ V P+ F L + L N L + AL +PL +
Sbjct: 178 SLD---------RLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEAL--APLRA 226
Query: 678 HKNIPDFYIGENPFQCDCNMQWLQSYSVNKERNKPNLVDLDTVTCKLLYNRANPAIL--- 734
+ + + +NP+ CDC + L + V C + P L
Sbjct: 227 LQYL---RLNDNPWVCDCRARPL----WAWLQKFRGSS--SEVPC------SLPQRLAGR 271
Query: 735 -LKEAHSNQFLC 745
LK +N
Sbjct: 272 DLKRLAANDLQG 283
Score = 124 bits (313), Expect = 2e-31
Identities = 44/159 (27%), Positives = 70/159 (44%), Gaps = 6/159 (3%)
Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
L+LD + +G F G LQ L+L + ++ + + TF L L L L NR++
Sbjct: 108 HTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS 167
Query: 866 IRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFA--VWHLSSQI 923
+ F L +L L L N++ ++ F L L L L N +++ +
Sbjct: 168 VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRAL 227
Query: 924 QSITLTSNPWSCDCDFTEKFRDYLQRSRSSVHDISQIRC 962
Q + L NPW CDC +LQ+ R S S++ C
Sbjct: 228 QYLRLNDNPWVCDCRARP-LWAWLQKFRGSS---SEVPC 262
>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR
domain, TLRS adaptor, immune system; 2.40A {Homo sapiens}
PDB: 3ub3_A 3ub4_A 2y92_A
Length = 146
Score = 172 bits (437), Expect = 7e-50
Identities = 30/140 (21%), Positives = 60/140 (42%), Gaps = 7/140 (5%)
Query: 1080 DRDKLFDAFVSYSSKDEAFVAEELAPILENGDPAYKLCLHYREFPVGGYIGDTIVQAVES 1139
K +D V +S +D ++L LE + + L R+ GG I + QA+ S
Sbjct: 6 RWSKDYDVCVCHSEEDLVAA-QDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSS 64
Query: 1140 SRRTIMVLSENFIKSEWCRYEFKSAHHQVLRGKKRLIVILLGEVPQKDLDPDIRLYLKSN 1199
S +++++ F++ WC+Y+ A + + I +L + + P L+
Sbjct: 65 SHCRVLLITPGFLQDPWCKYQMLQALTEAPGAEGCTIPLLS-GLSRAAYPP----ELRFM 119
Query: 1200 TYLQW-GDKLFWEKLKFALP 1218
Y+ G + ++K A+
Sbjct: 120 YYVDGRGPDGGFRQVKEAVM 139
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid,
MD-2, LPS, glycoprotein response, inflammatory response,
innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens}
PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Length = 276
Score = 165 bits (419), Expect = 1e-45
Identities = 49/208 (23%), Positives = 90/208 (43%), Gaps = 6/208 (2%)
Query: 222 NLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNL 281
+ + LDLS N L + F LQ L L + + D A L+ L+ L L+ N +
Sbjct: 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88
Query: 282 VNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSG 341
++ F+ L+++ ++ L L L L++++N + + FS
Sbjct: 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ-SFKLPEYFSN 147
Query: 342 LHRLVVLNIAYNKMNKLDSSIFKDLYRLQV----LHLENNQIESIHRNTFASLSNLHTLI 397
L L L+++ NK+ + + + L+++ + L L N + I F + L L
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLKELA 206
Query: 398 MSNNKLKRIESNSLDSLTALSVLSLDNN 425
+ N+LK + D LT+L + L N
Sbjct: 207 LDTNQLKSVPDGIFDRLTSLQKIWLHTN 234
Score = 158 bits (403), Expect = 2e-43
Identities = 58/204 (28%), Positives = 101/204 (49%), Gaps = 7/204 (3%)
Query: 347 VLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRI 406
L++++N + L S F LQVL L +I++I + SLS+L TLI++ N ++ +
Sbjct: 32 NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL 91
Query: 407 ESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIP--KVLRNLHSL 464
+ L++L L L +E + + +L++ ++ N + + NL +L
Sbjct: 92 ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL 151
Query: 465 KTLDLGDNLITEINNLSLNSLHQL----AGLRLTENNISNISKGVFEKLSVLTILNLASN 520
+ LDL N I I L LHQ+ L L+ N ++ I G F+++ L L L +N
Sbjct: 152 EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LKELALDTN 210
Query: 521 KIQKVEAGTFDNNSNLVAIRLDGN 544
+++ V G FD ++L I L N
Sbjct: 211 QLKSVPDGIFDRLTSLQKIWLHTN 234
Score = 150 bits (380), Expect = 2e-40
Identities = 52/206 (25%), Positives = 90/206 (43%), Gaps = 8/206 (3%)
Query: 369 LQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELE 428
+ L L N + + +F S L L +S +++ IE + SL+ LS L L N ++
Sbjct: 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89
Query: 429 YIEENALKNSTSLQDFHLNGNKLTEIP-KVLRNLHSLKTLDLGDNLITEINNLSL-NSLH 486
+ A +SLQ L + + +L +LK L++ NLI ++L
Sbjct: 90 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149
Query: 487 QLAGLRLTENNISNISKGVFEKLSVLTI----LNLASNKIQKVEAGTFDNNSNLVAIRLD 542
L L L+ N I +I L + + L+L+ N + ++ G F L + LD
Sbjct: 150 NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALD 208
Query: 543 GNYLTDI-GGLFPKLPNLVWLNISEN 567
N L + G+F +L +L + + N
Sbjct: 209 TNQLKSVPDGIFDRLTSLQKIWLHTN 234
Score = 135 bits (341), Expect = 2e-35
Identities = 58/220 (26%), Positives = 95/220 (43%), Gaps = 19/220 (8%)
Query: 113 DLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHNVFTDELQSLESL 172
K+L + F + +L + SF +L+ L L I + L L +L
Sbjct: 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT------IEDGAY-QSLSHLSTL 81
Query: 173 DLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNS 232
L+ N I +L F L SL L + L+++ F + L+ L++++N
Sbjct: 82 ILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHL------KTLKELNVAHNL 135
Query: 233 FDSLPAEG-FSRLSRLQELYLQGNILTFLADHALDGLNSLTV----LNLSVNNLVNIPPE 287
S FS L+ L+ L L N + + L L+ + + L+LS+N + I P
Sbjct: 136 IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG 195
Query: 288 LFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNN 327
F + R LKE+ L N + + GIF+ LT L + L N
Sbjct: 196 AFKEIR-LKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234
Score = 133 bits (336), Expect = 1e-34
Identities = 53/213 (24%), Positives = 86/213 (40%), Gaps = 20/213 (9%)
Query: 391 SNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNK 450
+ L +S N L+ + S S S L VL L E++ IE+ A ++ + L L GN
Sbjct: 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87
Query: 451 LTEIP-KVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNI-SKGVFEK 508
+ + L SL+ L + + + N + L L L + N I + F
Sbjct: 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147
Query: 509 LSVLTILNLASNKIQKVEAGTFDNNSNLVAIR----LDGNYLTDI-GGLFPKLPNLVWLN 563
L+ L L+L+SNKIQ + + + L N + I G F ++ L L
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLKELA 206
Query: 564 ISENLLEWFDYALIPAD-------LQWLDIHGN 589
+ N L+ +P LQ + +H N
Sbjct: 207 LDTNQLK-----SVPDGIFDRLTSLQKIWLHTN 234
Score = 128 bits (324), Expect = 6e-33
Identities = 64/271 (23%), Positives = 105/271 (38%), Gaps = 44/271 (16%)
Query: 447 NGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVF 506
+IP L S K LDL N + + + S S +L L L+ I I G +
Sbjct: 15 MELNFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAY 72
Query: 507 EKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDI-GGLFPKLPNLVWLNIS 565
+ LS L+ L L N IQ + G F S+L + L + L L LN++
Sbjct: 73 QSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVA 132
Query: 566 ENLLEWFDYALIPAD-------LQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTE 618
NL++ + + L+ LD+ N+I + T L +
Sbjct: 133 HNLIQ----SFKLPEYFSNLTNLEHLDLSSNKIQSIYC----------TDLR----VLHQ 174
Query: 619 LTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSH 678
+ + +L L+ N ++ +QP F + L + L N+LK++ L S
Sbjct: 175 MPLLNL-----SLDLSLNPMNFIQPGA-FKEIRLKELALDTNQLKSVPDGIF--DRLTSL 226
Query: 679 KNIPDFYIGENPFQCDCNM-----QWLQSYS 704
+ I ++ NP+ C C +WL S
Sbjct: 227 QKI---WLHTNPWDCSCPRIDYLSRWLNKNS 254
Score = 105 bits (264), Expect = 4e-25
Identities = 36/142 (25%), Positives = 58/142 (40%), Gaps = 5/142 (3%)
Query: 773 CTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQIL 832
C C + ++P +P L L N + +GS+SF +LQ+L
Sbjct: 3 CVEVVP----NITYQCMELNFY-KIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVL 57
Query: 833 FLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISN 892
L+ ++TI + + L L L L N + + F L +L++L + + N
Sbjct: 58 DLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLEN 117
Query: 893 RTFLSLTHLKVLQLDHNRITSF 914
L LK L + HN I SF
Sbjct: 118 FPIGHLKTLKELNVAHNLIQSF 139
Score = 96.2 bits (240), Expect = 7e-22
Identities = 43/183 (23%), Positives = 62/183 (33%), Gaps = 40/183 (21%)
Query: 793 YDNQLPPRIPMDA-------TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNK 845
++ I A + L L GN I + +F G LQ L +++ ++ N
Sbjct: 60 SRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENF 118
Query: 846 TFNGLKELIILRLDDNRLTEIRGYE-FERLENLRELYLQYNKIIYISNRTFLSLTHLKV- 903
LK L L + N + + E F L NL L L NKI I L + +
Sbjct: 119 PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL 178
Query: 904 ---LQLDHNRITSF--------------------------AVWHLSSQIQSITLTSNPWS 934
L L N + L+S +Q I L +NPW
Sbjct: 179 NLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTS-LQKIWLHTNPWD 237
Query: 935 CDC 937
C C
Sbjct: 238 CSC 240
Score = 70.8 bits (174), Expect = 3e-13
Identities = 42/179 (23%), Positives = 57/179 (31%), Gaps = 57/179 (31%)
Query: 101 SSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHN 160
+SL L LK+L+V I +
Sbjct: 113 ASLENFPIGHLKTLKELNVAHNLIQSF-----------------------------KLPE 143
Query: 161 VFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCG 220
F L +LE LDLS N I ++ L + LNL+
Sbjct: 144 YF-SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS--------------------- 181
Query: 221 INLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVN 279
LDLS N + + F + RL+EL L N L + D D L SL + L N
Sbjct: 182 -----LDLSLNPMNFIQPGAFKEI-RLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234
Score = 61.1 bits (149), Expect = 5e-10
Identities = 31/109 (28%), Positives = 46/109 (42%), Gaps = 18/109 (16%)
Query: 100 QSSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISH 159
QS P F L +L+ L + KI ++ R L ++ L L LD+S
Sbjct: 137 QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS----------LDLSL 186
Query: 160 NVFT-------DELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQN 201
N E++ L+ L L N + ++PD IF L SL + L N
Sbjct: 187 NPMNFIQPGAFKEIR-LKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex,
leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A
{Homo sapiens} PDB: 1xwd_C*
Length = 350
Score = 158 bits (402), Expect = 1e-42
Identities = 50/255 (19%), Positives = 100/255 (39%), Gaps = 12/255 (4%)
Query: 219 CGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSV 278
C + RV + +P++ EL L + A G L + +S
Sbjct: 7 CHCSNRVFLCQESKVTEIPSDLPRNA---IELRFVLTKLRVIQKGAFSGFGDLEKIEISQ 63
Query: 279 NNLV-NIPPELFNQSRDLKEVYLQN-NSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNA 336
N+++ I ++F+ L E+ ++ N++ + P F L L L +SN + +
Sbjct: 64 NDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKH--LPD 121
Query: 337 ATFSGLHRLVVLNIAYN-KMNKLDSSIFKDL-YRLQVLHLENNQIESIHRNTFASLSNLH 394
+ V+L+I N ++ ++ + F L + +L L N I+ IH + F
Sbjct: 122 VHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDE 181
Query: 395 TLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEI 454
+ NN L+ + ++ + +L + + + L+N L+ L ++
Sbjct: 182 LNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLKKL 239
Query: 455 PKVLRNLHSLKTLDL 469
P L L +L L
Sbjct: 240 P-TLEKLVALMEASL 253
Score = 147 bits (372), Expect = 1e-38
Identities = 46/249 (18%), Positives = 89/249 (35%), Gaps = 13/249 (5%)
Query: 322 LDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQI-E 380
+++TE + + L K+ + F L+ + + N + E
Sbjct: 14 FLCQESKVTE--IPSDLPRNAIEL---RFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE 68
Query: 381 SIHRNTFASLSNLHTLIMSN-NKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNST 439
I + F++L LH + + N L I + +L L L + N ++++ + +S
Sbjct: 69 VIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSL 128
Query: 440 SLQDFHLNGN-KLTEIP-KVLRNLHS-LKTLDLGDNLITEINNLSLNSLHQLAGLRLTEN 496
+ N + I L L L N I EI+N + N N
Sbjct: 129 QKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNN 188
Query: 497 NISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKL 556
N+ + VF S IL+++ +I + + +N L L + KL
Sbjct: 189 NLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKL--RARSTYNLKKL-PTLEKL 245
Query: 557 PNLVWLNIS 565
L+ +++
Sbjct: 246 VALMEASLT 254
Score = 142 bits (359), Expect = 6e-37
Identities = 48/261 (18%), Positives = 99/261 (37%), Gaps = 38/261 (14%)
Query: 168 SLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLD 227
+ L + + + F L + ++QN +
Sbjct: 31 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVL----------------------- 67
Query: 228 LSNNSFDSLPAEGFSRLSRLQELYLQ-GNILTFLADHALDGLNSLTVLNLSVNNLVNIPP 286
+ + A+ FS L +L E+ ++ N L ++ A L +L L +S + ++P
Sbjct: 68 ------EVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPD 121
Query: 287 ELFNQSRDLKEVYLQ-NNSINVLAPGIFNVLT-QLIVLDLSNNELTEEWVNAATFSGLHR 344
S + +Q N +I+ + F L+ + ++L L+ N + E ++ + F+G
Sbjct: 122 VHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE--IHNSAFNGTQL 179
Query: 345 LVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLK 404
+ N + +L + +F +L + +I S+ +L L S LK
Sbjct: 180 DELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRAR--STYNLK 237
Query: 405 RIESNSLDSLTALSVLSLDNN 425
++ +L+ L AL SL
Sbjct: 238 KLP--TLEKLVALMEASLTYP 256
Score = 133 bits (336), Expect = 7e-34
Identities = 43/244 (17%), Positives = 90/244 (36%), Gaps = 21/244 (8%)
Query: 113 DLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHNVFTDELQSLESL 172
+ +L K+ + G+F G L+ + + + N I +VF L L +
Sbjct: 31 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEI-SQNDVLEV----IEADVF-SNLPKLHEI 84
Query: 173 DLS-MNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLS-N 230
+ N++ + F L +L YL ++ + ++ + + +LD+ N
Sbjct: 85 RIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIH------SLQKVLLDIQDN 138
Query: 231 NSFDSLPAEGFSRLS-RLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELF 289
+ ++ F LS L+L N + + + A +G + NNL +P ++F
Sbjct: 139 INIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVF 198
Query: 290 NQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLN 349
+ + + + I+ L L +L N + T L L+ +
Sbjct: 199 HGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK------KLPTLEKLVALMEAS 252
Query: 350 IAYN 353
+ Y
Sbjct: 253 LTYP 256
Score = 121 bits (305), Expect = 7e-30
Identities = 59/357 (16%), Positives = 114/357 (31%), Gaps = 57/357 (15%)
Query: 440 SLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNI- 498
S + F +K+TEIP L + L + I + + L + +++N++
Sbjct: 10 SNRVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVL 67
Query: 499 SNISKGVFEKLSVLTILNLA-SNKIQKVEAGTFDNNSNLVAIRLDGNYLTDI-GGLFPKL 556
I VF L L + + +N + + F N NL + + + +
Sbjct: 68 EVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHS 127
Query: 557 PNLVWLNISENL----LEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDAS 612
V L+I +N+ +E + + + L ++ N I E+ N F+ +
Sbjct: 128 LQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSA----------FNGT 177
Query: 613 SNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNI------N 666
L EL NN + ++ F +D+ R+ ++ N
Sbjct: 178 Q--LDEL-----------NLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLEN 224
Query: 667 QTALRISPLPSHKNIPDFYIG--------ENPFQCDCNMQWLQSYS-VNKERNKPNLVDL 717
LR + K +P P C W + S ++ NK L
Sbjct: 225 LKKLRARSTYNLKKLPTLEKLVALMEASLTYPSHCCAFANWRRQISELHPICNKSILRQ- 283
Query: 718 DTVTCKLLYNRANPAILLKEAHSNQFLCEYETNCAPLCHCCDFDACDCEMTCPNNCT 774
+ L E + + + ++ +FD C C+
Sbjct: 284 ---EVDYMTQARGQRSSLAEDNESSYSRGFDMTYT------EFDYDLCNEVVDVTCS 331
Score = 97.2 bits (242), Expect = 1e-21
Identities = 36/179 (20%), Positives = 62/179 (34%), Gaps = 15/179 (8%)
Query: 101 SSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHN 160
++P +FQ L +L+ L + I +L + L ++ + + I N
Sbjct: 93 LYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHT-----IERN 147
Query: 161 VFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCG 220
F L L+ N I + ++ F Q N L + F
Sbjct: 148 SFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGAS----- 202
Query: 221 INLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVN 279
+LD+S SLP+ G L +L+ L L L+ L +L +L+
Sbjct: 203 -GPVILDISRTRIHSLPSYGLENLKKLRARST--YNLKKL--PTLEKLVALMEASLTYP 256
Score = 96.8 bits (241), Expect = 1e-21
Identities = 36/170 (21%), Positives = 69/170 (40%), Gaps = 14/170 (8%)
Query: 769 CPN-NCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRK 827
C + C C + V C ++P +P +A EL ++ V+ +F G
Sbjct: 2 CHHRICHCSN------RVFLCQESKVT-EIPSDLPRNAIELRFVLTKLRVIQKGAFSGFG 54
Query: 828 KLQILFLNSSH-VETIHNKTFNGLKELIILRLDD-NRLTEIRGYEFERLENLRELYLQYN 885
L+ + ++ + +E I F+ L +L +R++ N L I F+ L NL+ L +
Sbjct: 55 DLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNT 114
Query: 886 KIIYISNRTFLSLTHLKVLQLDHN----RITSFAVWHLSSQIQSITLTSN 931
I ++ + + +L + N I + LS + + L N
Sbjct: 115 GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN 164
Score = 81.4 bits (201), Expect = 2e-16
Identities = 28/134 (20%), Positives = 51/134 (38%), Gaps = 5/134 (3%)
Query: 806 TELYLDGN-RIPVVGSHSFIG-RKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRL 863
L + N I + +SF+G + IL+LN + ++ IHN FNG + + D+N L
Sbjct: 131 VLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNL 190
Query: 864 TEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSSQI 923
E+ F L + +I + + +L L+ + +
Sbjct: 191 EELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLKKLPTLEKLVAL 248
Query: 924 QSITLTSNPWSCDC 937
+L + P C
Sbjct: 249 MEASL-TYPSHCCA 261
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR,
IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo
sapiens}
Length = 159
Score = 149 bits (378), Expect = 8e-42
Identities = 37/159 (23%), Positives = 75/159 (47%), Gaps = 24/159 (15%)
Query: 1083 KLFDAFVSYSSKD-----------EAFVAEELAPILENGDPAYKLCLHYREFPVGGYIGD 1131
K +DA++SY+ D E F E L +LE YKL + R+ G +
Sbjct: 1 KDYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEK-HYGYKLFIPDRDLIPTGTYIE 59
Query: 1132 TIVQAVESSRRTIMVLSENF-IKSEWCRYEFKSAHHQVL-RGKKRLIVILLGEVPQKDLD 1189
+ + V+ S+R I+V++ N+ ++ W +E ++ +L G+ ++I+I E+
Sbjct: 60 DVARCVDQSKRLIIVMTPNYVVRRGWSIFELETRLRNMLVTGEIKVILIECSELRGIMNY 119
Query: 1190 PD---IRLYLKSNTYLQWGD-------KLFWEKLKFALP 1218
+ ++ +K T ++W FW++L++ +P
Sbjct: 120 QEVEALKHTIKLLTVIKWHGPKCNKLNSKFWKRLQYEMP 158
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine
rich repeat domain, type three effector, salmonella
virulence factor; 1.90A {Salmonella typhimurium}
Length = 622
Score = 161 bits (409), Expect = 2e-41
Identities = 70/324 (21%), Positives = 123/324 (37%), Gaps = 53/324 (16%)
Query: 166 LQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNV-ATFSFSNYDTARCGINLR 224
L++ + + TLPD + ++ L + N L+++ A LR
Sbjct: 39 NNGNAVLNVGESGLTTLPDCLP---AHITTLVIPDNNLTSLPALPP-----------ELR 84
Query: 225 VLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNI 284
L++S N SLP L L L L + L L + N L ++
Sbjct: 85 TLEVSGNQLTSLPVL-PPGLLELSIFSNPLTHLPAL-------PSGLCKLWIFGNQLTSL 136
Query: 285 PPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHR 344
P L+E+ + +N + L ++L L NN+LT
Sbjct: 137 PVLPPG----LQELSVSDNQLASLPALP----SELCKLWAYNNQLTS------LPMLPSG 182
Query: 345 LVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLK 404
L L+++ N++ L + + L L NN++ S+ A S L LI+S N+L
Sbjct: 183 LQELSVSDNQLASLPTLPSE----LYKLWAYNNRLTSLP----ALPSGLKELIVSGNRLT 234
Query: 405 RIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSL 464
+ + L L + N L + + L + N+LT +P+ L +L S
Sbjct: 235 SLP----VLPSELKELMVSGNRLTSLPML----PSGLLSLSVYRNQLTRLPESLIHLSSE 286
Query: 465 KTLDLGDNLITEINNLSLNSLHQL 488
T++L N ++E +L +
Sbjct: 287 TTVNLEGNPLSERTLQALREITSA 310
Score = 153 bits (388), Expect = 9e-39
Identities = 78/432 (18%), Positives = 148/432 (34%), Gaps = 53/432 (12%)
Query: 181 TLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEG 240
+ C + LN+ ++ L+ + + ++ L + +N+ SLPA
Sbjct: 30 VVQKMRACLNNGNAVLNVGESGLTTLPDCLPA---------HITTLVIPDNNLTSLPAL- 79
Query: 241 FSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYL 300
L+ L + GN LT L GL L++ + + +L +P L ++++
Sbjct: 80 ---PPELRTLEVSGNQLTSLPVL-PPGLLELSIFSNPLTHLPALPSG-------LCKLWI 128
Query: 301 QNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDS 360
N + L L L +S+N+L + L L N++ L
Sbjct: 129 FGNQLTSLPVLP----PGLQELSVSDNQLAS------LPALPSELCKLWAYNNQLTSLPM 178
Query: 361 SIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVL 420
LQ L + +NQ+ S+ S L+ L NN+L + + + L L
Sbjct: 179 LPSG----LQELSVSDNQLASL----PTLPSELYKLWAYNNRLTSLPA----LPSGLKEL 226
Query: 421 SLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNL 480
+ N L + + L++ ++GN+LT +P + L +L + N +T +
Sbjct: 227 IVSGNRLTSLPVLP----SELKELMVSGNRLTSLPMLPSG---LLSLSVYRNQLTRLPE- 278
Query: 481 SLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIR 540
SL L + L N +S + +++ + + A L
Sbjct: 279 SLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAA 338
Query: 541 LDGNYLTDIGGLFP--KLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYF 598
D G P + + ++ + D + QIS
Sbjct: 339 ADWLVPAREGEPAPADRWHMFGQEDNADAFSLFLDRLSETENFIKDAGFKAQISSWLAQL 398
Query: 599 EIESQLRLTYFD 610
+ LR F
Sbjct: 399 AEDEALRANTFA 410
Score = 141 bits (358), Expect = 5e-35
Identities = 68/340 (20%), Positives = 114/340 (33%), Gaps = 50/340 (14%)
Query: 154 SLDISHNVFT---DELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFS 210
+L I N T L +L++S N + +LP L LS + L + +
Sbjct: 65 TLVIPDNNLTSLPALPPELRTLEVSGNQLTSLPVLP-PGLLELSIFSNPLTHLPALPS-- 121
Query: 211 FSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNS 270
L L + N SLP LQEL + N L L +
Sbjct: 122 -----------GLCKLWIFGNQLTSLPVL----PPGLQELSVSDNQLASLP----ALPSE 162
Query: 271 LTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELT 330
L L N L ++P L+E+ + +N + L L +L + L
Sbjct: 163 LCKLWAYNNQLTSLPMLPSG----LQELSVSDNQLASLPTLPSE-LYKLWAYNNRLTSLP 217
Query: 331 EEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASL 390
L L ++ N++ L + L+ L + N++ S+
Sbjct: 218 AL---------PSGLKELIVSGNRLTSLPVLPSE----LKELMVSGNRLTSLP----MLP 260
Query: 391 SNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNK 450
S L +L + N+L R+ SL L++ + ++L+ N L AL+ TS + +
Sbjct: 261 SGLLSLSVYRNQLTRL-PESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIR 319
Query: 451 LTEIPKVLRNLHSLKTLDLGDNLI--TEINNLSLNSLHQL 488
L D L+ E + H
Sbjct: 320 FDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWHMF 359
Score = 141 bits (358), Expect = 6e-35
Identities = 69/407 (16%), Positives = 131/407 (32%), Gaps = 78/407 (19%)
Query: 222 NLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNL 281
VL++ + +LP + + L + N LT L L L +S N L
Sbjct: 41 GNAVLNVGESGLTTLPDCLPAHI---TTLVIPDNNLTSLPAL----PPELRTLEVSGNQL 93
Query: 282 VNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSG 341
++P L +L + L
Sbjct: 94 TSLPVLPPG-------------------------LLELSIFSNPLTHLPAL--------- 119
Query: 342 LHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNN 401
L L I N++ L LQ L + +NQ+ S+ A S L L NN
Sbjct: 120 PSGLCKLWIFGNQLTSLPVLPPG----LQELSVSDNQLASLP----ALPSELCKLWAYNN 171
Query: 402 KLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNL 461
+L + + L LS+ +N+L + + L N+LT +P
Sbjct: 172 QLTSLP----MLPSGLQELSVSDNQLASLPTL----PSELYKLWAYNNRLTSLPA---LP 220
Query: 462 HSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNK 521
LK L + N +T + +L L ++ N ++++ S L L++ N+
Sbjct: 221 SGLKELIVSGNRLTSLPV----LPSELKELMVSGNRLTSLP----MLPSGLLSLSVYRNQ 272
Query: 522 IQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYALIPADL 581
+ ++ + S+ + L+GN L++ + + A P +
Sbjct: 273 LTRLPES-LIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRET 331
Query: 582 QWLDIHGN---------QISELGNYFEIESQLRLTYFDASSNKLTEL 619
+ L + + + + + F ++L+E
Sbjct: 332 RALHLAAADWLVPAREGEPAPADRWHMFGQEDNADAFSLFLDRLSET 378
Score = 135 bits (340), Expect = 9e-33
Identities = 72/408 (17%), Positives = 131/408 (32%), Gaps = 93/408 (22%)
Query: 268 LNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNN 327
N VLN+ + L +P L + + + +N++ L +L L++S N
Sbjct: 39 NNGNAVLNVGESGLTTLPDCLPAH---ITTLVIPDNNLTSLPALP----PELRTLEVSGN 91
Query: 328 ELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTF 387
+LT GL L + + + L S L L + NQ+ S+
Sbjct: 92 QLTSL---PVLPPGLLELSIFSNPLTHLPALPSG-------LCKLWIFGNQLTSLP---- 137
Query: 388 ASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLN 447
L L +S+N+L + + L L NN+L + + LQ+ ++
Sbjct: 138 VLPPGLQELSVSDNQLASLP----ALPSELCKLWAYNNQLTSLPMLP----SGLQELSVS 189
Query: 448 GNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFE 507
N+L +P L L +N +T + L L L ++ N ++++
Sbjct: 190 DNQLASLPT---LPSELYKLWAYNNRLTSLPAL----PSGLKELIVSGNRLTSLP----V 238
Query: 508 KLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISEN 567
S L L ++ N++ LP L
Sbjct: 239 LPSELKELMVSGNRLTS-------------------------------LPML-------- 259
Query: 568 LLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPHS 627
P+ L L ++ NQ++ L + T + N L+E T A+
Sbjct: 260 ----------PSGLLSLSVYRNQLTRLPE--SLIHLSSETTVNLEGNPLSERTLQALREI 307
Query: 628 VENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPL 675
+ +I P TR + + +P
Sbjct: 308 TSAPGYSGPIIR--FDMAGASAPRETRALHLAAADWLVPAREGEPAPA 353
Score = 121 bits (304), Expect = 3e-28
Identities = 67/370 (18%), Positives = 113/370 (30%), Gaps = 78/370 (21%)
Query: 114 LKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHNVFTDELQSLESLD 173
L+ L V ++ +L GL +L L L
Sbjct: 83 LRTLEVSGNQLTSLPV-LPPGLLELSIF--------------SNPLTHLPALPSGLCKLW 127
Query: 174 LSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSF 233
+ N + +LP L+ L +S+N
Sbjct: 128 IFGNQLTSLPVLPP----------------------------------GLQELSVSDNQL 153
Query: 234 DSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSR 293
SLPA S L +L+ N LT L + L L++S N L ++P
Sbjct: 154 ASLPAL----PSELCKLWAYNNQLTSL----PMLPSGLQELSVSDNQLASLPTLPSE--- 202
Query: 294 DLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYN 353
L +++ NN + L + L L +S N LT L L ++ N
Sbjct: 203 -LYKLWAYNNRLTSLPALP----SGLKELIVSGNRLTS------LPVLPSELKELMVSGN 251
Query: 354 KMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDS 413
++ L L L + NQ+ + + LS+ T+ + N L +L
Sbjct: 252 RLTSLPMLPSG----LLSLSVYRNQLTRL-PESLIHLSSETTVNLEGNPLSERTLQALRE 306
Query: 414 LTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEI--PKVLRNLHSLKTLDLGD 471
+T+ S + +A + + +L + P H D D
Sbjct: 307 ITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWHMFGQEDNAD 366
Query: 472 NLITEINNLS 481
++ LS
Sbjct: 367 AFSLFLDRLS 376
Score = 119 bits (300), Expect = 8e-28
Identities = 62/346 (17%), Positives = 113/346 (32%), Gaps = 49/346 (14%)
Query: 376 NNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENAL 435
+ + + + L + + L + +T L + +N L +
Sbjct: 25 RGRAAVVQKMRACLNNGNAVLNVGESGLTTLPDCLPAHIT---TLVIPDNNLTSLPALP- 80
Query: 436 KNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDN----LITEINNLSL--------- 482
L+ ++GN+LT +P + L L L + + L +
Sbjct: 81 ---PELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLP 137
Query: 483 NSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLD 542
L L +++N ++++ S L L +N++ + S L + +
Sbjct: 138 VLPPGLQELSVSDNQLASLPAL----PSELCKLWAYNNQLTSLP----MLPSGLQELSVS 189
Query: 543 GNYLTDIGGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIES 602
N L L L L N L AL L+ L + GN+++ L
Sbjct: 190 DNQLAS---LPTLPSELYKLWAYNNRLTSLP-ALPSG-LKELIVSGNRLTSLPV--LPSE 242
Query: 603 QLRLTYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRL 662
L S N+LT L +P + +L + N ++++ P + + T V+L GN L
Sbjct: 243 ---LKELMVSGNRLTSL--PMLPSGLLSLSVYRNQLTRL-PESLIHLSSETTVNLEGNPL 296
Query: 663 KNINQTALR--------ISPLPSHKNIPDFYIGENPFQCDCNMQWL 700
ALR P+ E WL
Sbjct: 297 SERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWL 342
Score = 74.2 bits (182), Expect = 1e-13
Identities = 40/220 (18%), Positives = 67/220 (30%), Gaps = 28/220 (12%)
Query: 154 SLDISHNVFT---DELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFS 210
L +N T L+ L +S N + +LP L L ++ N+L+++
Sbjct: 205 KLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVLP----SELKELMVSGNRLTSLP--- 257
Query: 211 FSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNS 270
L L + N LP LS + L+GN L+ AL + S
Sbjct: 258 ------MLPS-GLLSLSVYRNQLTRLPES-LIHLSSETTVNLEGNPLSERTLQALREITS 309
Query: 271 LTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELT 330
+ + ++R L + + L P + E
Sbjct: 310 APGYSGPIIRFDMAGASAPRETRA-----LHLAAADWLVPAREGEPAPADRWHMFGQED- 363
Query: 331 EEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQ 370
NA FS + + K + I L +L
Sbjct: 364 ----NADAFSLFLDRLSETENFIKDAGFKAQISSWLAQLA 399
Score = 56.1 bits (135), Expect = 5e-08
Identities = 24/136 (17%), Positives = 52/136 (38%), Gaps = 18/136 (13%)
Query: 796 QLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELII 855
LP +P T L + N + + + +L+ L ++ + + ++ GL EL I
Sbjct: 54 TLPDCLPAHITTLVIPDNNLTSLPAL--PP--ELRTLEVSGNQLTSL-PVLPPGLLELSI 108
Query: 856 LRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFA 915
L + L +L++ N++ + L+ L + N++ S
Sbjct: 109 FSNPLTHLPAL-------PSGLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQLASLP 157
Query: 916 VWHLSSQIQSITLTSN 931
L S++ + +N
Sbjct: 158 A--LPSELCKLWAYNN 171
Score = 52.2 bits (125), Expect = 1e-06
Identities = 28/139 (20%), Positives = 57/139 (41%), Gaps = 19/139 (13%)
Query: 794 DNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKEL 853
LP +P +L++ GN++ + LQ L ++ + + ++ EL
Sbjct: 113 LTHLP-ALPSGLCKLWIFGNQLTSLPVLP----PGLQELSVSDNQLASLPA----LPSEL 163
Query: 854 IILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITS 913
L +N+LT + L+EL + N++ + + L L +NR+TS
Sbjct: 164 CKLWAYNNQLTSLP----MLPSGLQELSVSDNQLASLPT----LPSELYKLWAYNNRLTS 215
Query: 914 FAVWHLSSQIQSITLTSNP 932
L S ++ + ++ N
Sbjct: 216 LPA--LPSGLKELIVSGNR 232
Score = 46.8 bits (111), Expect = 4e-05
Identities = 26/136 (19%), Positives = 50/136 (36%), Gaps = 29/136 (21%)
Query: 795 NQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELI 854
LP P + L + GN++ + G +L I +H+ + L
Sbjct: 74 TSLPALPP-ELRTLEVSGNQLTSL-PVLPPGLLELSIFSNPLTHLPAL-------PSGLC 124
Query: 855 ILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYI-------------SNR-TFL--SL 898
L + N+LT + L+EL + N++ + +N+ T L
Sbjct: 125 KLWIFGNQLTSLP----VLPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLP 180
Query: 899 THLKVLQLDHNRITSF 914
+ L+ L + N++ S
Sbjct: 181 SGLQELSVSDNQLASL 196
Score = 44.1 bits (104), Expect = 3e-04
Identities = 29/145 (20%), Positives = 59/145 (40%), Gaps = 16/145 (11%)
Query: 793 YDNQLP--PRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGL 850
Y+N+L P +P EL + GNR+ + +L+ L ++ + + ++
Sbjct: 209 YNNRLTSLPALPSGLKELIVSGNRLTSLPVL--PS--ELKELMVSGNRLTSLPM----LP 260
Query: 851 KELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNR 910
L+ L + N+LT + L + + L+ N +S RT +L +
Sbjct: 261 SGLLSLSVYRNQLTRLP-ESLIHLSSETTVNLEGNP---LSERTLQALREITSAPGYSGP 316
Query: 911 ITSFAVWHLS--SQIQSITLTSNPW 933
I F + S + +++ L + W
Sbjct: 317 IIRFDMAGASAPRETRALHLAAADW 341
Score = 41.8 bits (98), Expect = 0.002
Identities = 10/62 (16%), Positives = 25/62 (40%), Gaps = 7/62 (11%)
Query: 853 LIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRIT 912
+L + ++ LT + ++ L + N + + L+ L++ N++T
Sbjct: 42 NAVLNVGESGLTTLPD---CLPAHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLT 94
Query: 913 SF 914
S
Sbjct: 95 SL 96
Score = 30.2 bits (68), Expect = 5.5
Identities = 6/42 (14%), Positives = 14/42 (33%), Gaps = 3/42 (7%)
Query: 873 RLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSF 914
L + + + + + H+ L + N +TS
Sbjct: 38 LNNGNAVLNVGESGLTTLPDC---LPAHITTLVIPDNNLTSL 76
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors,
glycocalicin, leucine rich repeats, BLOO clotting; HET:
NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB:
1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A*
1p8v_A* 1u0n_D 3p72_A
Length = 290
Score = 152 bits (387), Expect = 3e-41
Identities = 55/207 (26%), Positives = 84/207 (40%), Gaps = 8/207 (3%)
Query: 266 DGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLS 325
+ S +N NL +PP+L +D ++L N + + T+L L+L
Sbjct: 7 SKVASHLEVNCDKRNLTALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLD 63
Query: 326 NNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRN 385
ELT+ V L L L++++N++ L + + L L VL + N++ S+
Sbjct: 64 RAELTKLQV----DGTLPVLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLG 118
Query: 386 TFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFH 445
L L L + N+LK + L L LSL NN L + L +L
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLL 178
Query: 446 LNGNKLTEIPKVLRNLHSLKTLDLGDN 472
L N L IPK H L L N
Sbjct: 179 LQENSLYTIPKGFFGSHLLPFAFLHGN 205
Score = 141 bits (356), Expect = 4e-37
Identities = 50/210 (23%), Positives = 76/210 (36%), Gaps = 9/210 (4%)
Query: 216 TARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLN 275
+ ++ + +LP + L+L N+L + L LT LN
Sbjct: 5 EVSKVASHLEVNCDKRNLTALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLN 61
Query: 276 LSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVN 335
L L + L + L +N + L P + L L VLD+S N LT +
Sbjct: 62 LDRAELTKLQV--DGTLPVLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTS--LP 116
Query: 336 AATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHT 395
GL L L + N++ L + +L+ L L NN + + L NL T
Sbjct: 117 LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDT 176
Query: 396 LIMSNNKLKRIESNSLDSLTALSVLSLDNN 425
L++ N L I S L L N
Sbjct: 177 LLLQENSLYTIPKGFFGSH-LLPFAFLHGN 205
Score = 134 bits (338), Expect = 9e-35
Identities = 55/236 (23%), Positives = 89/236 (37%), Gaps = 39/236 (16%)
Query: 166 LQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRV 225
+ S ++ ++ LP + + + L+L++N L + + Y L
Sbjct: 9 VASHLEVNCDKRNLTALPPDLP---KDTTILHLSENLLYTFSLATLMPYT------RLTQ 59
Query: 226 LDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIP 285
L+L L L L L L N L L L +LTVL++S N L ++P
Sbjct: 60 LNLDRAELTKLQV--DGTLPVLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRLTSLP 116
Query: 286 PELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRL 345
+L+E+YL+ N + L PG+ +L L L+NN LTE
Sbjct: 117 LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE-------------- 162
Query: 346 VVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNN 401
L + + L L L L+ N + +I + F S L + N
Sbjct: 163 ------------LPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHL-LPFAFLHGN 205
Score = 131 bits (331), Expect = 9e-34
Identities = 48/200 (24%), Positives = 85/200 (42%), Gaps = 7/200 (3%)
Query: 369 LQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELE 428
++ + + ++ + + LH +S N L +L T L+ L+LD EL
Sbjct: 12 HLEVNCDKRNLTALPPDLPKDTTILH---LSENLLYTFSLATLMPYTRLTQLNLDRAELT 68
Query: 429 YIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQL 488
++ L L+ N+L +P + + L +L LD+ N +T + +L L +L
Sbjct: 69 KLQ--VDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL 126
Query: 489 AGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTD 548
L L N + + G+ L L+LA+N + ++ AG + NL + L N L
Sbjct: 127 QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT 186
Query: 549 I-GGLFPKLPNLVWLNISEN 567
I G F L + + N
Sbjct: 187 IPKGFFG-SHLLPFAFLHGN 205
Score = 114 bits (286), Expect = 8e-28
Identities = 48/191 (25%), Positives = 78/191 (40%), Gaps = 17/191 (8%)
Query: 113 DLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHNVFTDELQSLESL 172
D L + + S + +L L L ++ L L +L
Sbjct: 32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE---------LTKLQVDGTLPVLGTL 82
Query: 173 DLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNS 232
DLS N + +LP + L +L+ L+++ N+L+++ + L+ L L N
Sbjct: 83 DLSHNQLQSLP-LLGQTLPALTVLDVSFNRLTSLPLGALRGL------GELQELYLKGNE 135
Query: 233 FDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQS 292
+LP + +L++L L N LT L L+GL +L L L N+L IP F S
Sbjct: 136 LKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFG-S 194
Query: 293 RDLKEVYLQNN 303
L +L N
Sbjct: 195 HLLPFAFLHGN 205
Score = 109 bits (274), Expect = 3e-26
Identities = 55/282 (19%), Positives = 95/282 (33%), Gaps = 58/282 (20%)
Query: 459 RNLHSLKTLDLGDNLITEI-NNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNL 517
+ S ++ +T + +L + L L+EN + S + LT LNL
Sbjct: 7 SKVASHLEVNCDKRNLTALPPDLPKD----TTILHLSENLLYTFSLATLMPYTRLTQLNL 62
Query: 518 ASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYALI 577
++ K++ L + L N L + L LP L L++S N L +
Sbjct: 63 DRAELTKLQV--DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLT-----SL 115
Query: 578 PAD-------LQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPHSVEN 630
P LQ L + GN++ L +L
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPP----------GLLT----PTPKLE---------K 152
Query: 631 LFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHKNIPDFYIGENP 690
L L NN ++++ NL + L N L I + +P ++ NP
Sbjct: 153 LSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF------GSHLLPFAFLHGNP 206
Query: 691 FQCDCNM----QWLQSYS------VNKERNKPNLVDLDTVTC 722
+ C+C + +WLQ + K ++ +V C
Sbjct: 207 WLCNCEILYFRRWLQDNAENVYVWKQGVDVKAMTSNVASVQC 248
Score = 103 bits (258), Expect = 3e-24
Identities = 30/138 (21%), Positives = 50/138 (36%), Gaps = 10/138 (7%)
Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
L L N++ + L +L ++ + + ++ GL EL L L N L
Sbjct: 80 GTLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT 138
Query: 866 IRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITS-----FAVWHLS 920
+ L +L L N + + L +L L L N + + F S
Sbjct: 139 LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFG----S 194
Query: 921 SQIQSITLTSNPWSCDCD 938
+ L NPW C+C+
Sbjct: 195 HLLPFAFLHGNPWLCNCE 212
Score = 70.9 bits (174), Expect = 3e-13
Identities = 38/151 (25%), Positives = 53/151 (35%), Gaps = 38/151 (25%)
Query: 105 PGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHNVFTD 164
P QTL L L V F ++ +L G+ RGL +L+
Sbjct: 93 PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQE------------------------ 128
Query: 165 ELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLR 224
L L N + TLP + P L L+L N L+ + + NL
Sbjct: 129 -------LYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGL------ENLD 175
Query: 225 VLDLSNNSFDSLPAEGFSRLSRLQELYLQGN 255
L L NS ++P F L +L GN
Sbjct: 176 TLLLQENSLYTIPKGFFGSHL-LPFAFLHGN 205
Score = 61.7 bits (150), Expect = 4e-10
Identities = 25/101 (24%), Positives = 49/101 (48%), Gaps = 8/101 (7%)
Query: 101 SSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHN 160
+SL G+ + L +L++L ++ ++ L G KL+ L+L +N +
Sbjct: 113 TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA-NNNLTE-----LPAG 166
Query: 161 VFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQN 201
+ + L++L++L L NS++T+P F L + L N
Sbjct: 167 LL-NGLENLDTLLLQENSLYTIPKGFF-GSHLLPFAFLHGN 205
Score = 45.9 bits (109), Expect = 4e-05
Identities = 14/56 (25%), Positives = 23/56 (41%)
Query: 876 NLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSSQIQSITLTSN 931
+ L+L N + S T + T L L LD +T V + ++ L+ N
Sbjct: 32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHN 87
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR,
immune system; 2.50A {Eptatretus burgeri}
Length = 270
Score = 151 bits (384), Expect = 4e-41
Identities = 66/204 (32%), Positives = 97/204 (47%), Gaps = 26/204 (12%)
Query: 222 NLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNL 281
+ + LDL +N SLP++ F RL++L+ LYL N L L L +L L ++ N L
Sbjct: 38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKL 97
Query: 282 VNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSG 341
+P +F+Q +L E+ L N + L P +F+ LT+L L L NEL
Sbjct: 98 QALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS---------- 147
Query: 342 LHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNN 401
L +F L L+ L L NNQ++ + F L+ L TL + NN
Sbjct: 148 ----------------LPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNN 191
Query: 402 KLKRIESNSLDSLTALSVLSLDNN 425
+LKR+ + DSL L +L L N
Sbjct: 192 QLKRVPEGAFDSLEKLKMLQLQEN 215
Score = 148 bits (377), Expect = 4e-40
Identities = 65/205 (31%), Positives = 104/205 (50%), Gaps = 6/205 (2%)
Query: 269 NSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNE 328
N+ ++ S L IP + D K++ LQ+N ++ L F+ LT+L +L L++N+
Sbjct: 16 NNKNSVDCSSKKLTAIPSNIPA---DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK 72
Query: 329 LTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFA 388
L + A F L L L + NK+ L +F L L L L+ NQ++S+ F
Sbjct: 73 LQT--LPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFD 130
Query: 389 SLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNG 448
SL+ L L + N+L+ + D LT+L L L NN+L+ + E A T L+ L+
Sbjct: 131 SLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDN 190
Query: 449 NKLTEIPK-VLRNLHSLKTLDLGDN 472
N+L +P+ +L LK L L +N
Sbjct: 191 NQLKRVPEGAFDSLEKLKMLQLQEN 215
Score = 131 bits (332), Expect = 4e-34
Identities = 62/186 (33%), Positives = 86/186 (46%), Gaps = 8/186 (4%)
Query: 168 SLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLD 227
+ LDL N + +LP F L L L L NKL + F NL L
Sbjct: 38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELK------NLETLW 91
Query: 228 LSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPE 287
+++N +LP F +L L EL L N L L D L LT L+L N L ++P
Sbjct: 92 VTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKG 151
Query: 288 LFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVV 347
+F++ LKE+ L NN + + G F+ LT+L L L NN+L V F L +L +
Sbjct: 152 VFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKR--VPEGAFDSLEKLKM 209
Query: 348 LNIAYN 353
L + N
Sbjct: 210 LQLQEN 215
Score = 122 bits (309), Expect = 4e-31
Identities = 57/171 (33%), Positives = 77/171 (45%), Gaps = 7/171 (4%)
Query: 157 ISHNVFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDT 216
+ F L L L L+ N + TLP IF L++L L +T NKL + F
Sbjct: 52 LPSKAF-HRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQL-- 108
Query: 217 ARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNL 276
+NL L L N SLP F L++L L L N L L D L SL L L
Sbjct: 109 ----VNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRL 164
Query: 277 SVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNN 327
N L +P F++ +LK + L NN + + G F+ L +L +L L N
Sbjct: 165 YNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
Score = 119 bits (301), Expect = 6e-30
Identities = 59/192 (30%), Positives = 91/192 (47%), Gaps = 15/192 (7%)
Query: 113 DLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSL-DISHNVFTDELQSLES 171
D K L ++ K+ +L + +F L KL+ L L + L + +F EL++LE+
Sbjct: 38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYL-------NDNKLQTLPAGIF-KELKNLET 89
Query: 172 LDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNN 231
L ++ N + LP +F L +L+ L L +N+L ++ F + L L L N
Sbjct: 90 LWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSL------TKLTYLSLGYN 143
Query: 232 SFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQ 291
SLP F +L+ L+EL L N L + + A D L L L L N L +P F+
Sbjct: 144 ELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDS 203
Query: 292 SRDLKEVYLQNN 303
LK + LQ N
Sbjct: 204 LEKLKMLQLQEN 215
Score = 116 bits (293), Expect = 5e-29
Identities = 57/196 (29%), Positives = 91/196 (46%), Gaps = 19/196 (9%)
Query: 408 SNSLDSL-----TALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIP-KVLRNL 461
S L ++ L L +N+L + A T L+ +LN NKL +P + + L
Sbjct: 25 SKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKEL 84
Query: 462 HSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNK 521
+L+TL + DN + + + L LA LRL N + ++ VF+ L+ LT L+L N+
Sbjct: 85 KNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE 144
Query: 522 IQKVEAGTFDNNSNLVAIRLDGNYLTDI-GGLFPKLPNLVWLNISENLLEWFDYALIPAD 580
+Q + G FD ++L +RL N L + G F KL L L + N L+ +P
Sbjct: 145 LQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-----RVPEG 199
Query: 581 -------LQWLDIHGN 589
L+ L + N
Sbjct: 200 AFDSLEKLKMLQLQEN 215
Score = 109 bits (274), Expect = 2e-26
Identities = 71/292 (24%), Positives = 112/292 (38%), Gaps = 66/292 (22%)
Query: 438 STSLQDFHLNGNKLTEIPKVLRNL-HSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTEN 496
+ + + KLT IP N+ K LDL N ++ + + + + L +L L L +N
Sbjct: 15 NNNKNSVDCSSKKLTAIP---SNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN 71
Query: 497 NISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDI-GGLFPK 555
+ + G+F++L L L + NK+Q + G FD NL +RLD N L + +F
Sbjct: 72 KLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDS 131
Query: 556 LPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNK 615
L L +L + N++ L FD K
Sbjct: 132 LTKL----------------------TYLSLGYNELQSLPK----------GVFD----K 155
Query: 616 LTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPL 675
LT L L L NN + +V F L + L N+LK + + A L
Sbjct: 156 LTSLK---------ELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAF--DSL 204
Query: 676 PSHKNIPDFYIGENPFQCDCNM-----QWLQSYSVNKERNKPNLVDLDTVTC 722
K + + ENP+ C CN +WL+ + ++ DT C
Sbjct: 205 EKLKML---QLQENPWDCTCNGIIYMAKWLKKKA-DEGLGGV-----DTAGC 247
Score = 95.8 bits (239), Expect = 8e-22
Identities = 56/223 (25%), Positives = 86/223 (38%), Gaps = 63/223 (28%)
Query: 769 CPNNCTCYHDVSWEANVIDCSTGGYDNQL---PPRIPMDATELYLDGNRIPVVGSHSFIG 825
C+C + N +DCS +L P IP D +L L N++ + S +F
Sbjct: 8 DGGVCSC----NNNKNSVDCS----SKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHR 59
Query: 826 RKKLQILFLNSSHVETI-----------------HNK-------TFNGLKELIILRLDDN 861
KL++L+LN + ++T+ NK F+ L L LRLD N
Sbjct: 60 LTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRN 119
Query: 862 RLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSF------- 914
+L + F+ L L L L YN++ + F LT LK L+L +N++
Sbjct: 120 QLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDK 179
Query: 915 --------------------AVWHLSSQIQSITLTSNPWSCDC 937
A L ++ + L NPW C C
Sbjct: 180 LTELKTLKLDNNQLKRVPEGAFDSLEK-LKMLQLQENPWDCTC 221
Score = 91.6 bits (228), Expect = 3e-20
Identities = 48/155 (30%), Positives = 64/155 (41%), Gaps = 13/155 (8%)
Query: 101 SSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHN 160
+L G F+ L +L+ L V K+ L G F L L L L + +
Sbjct: 74 QTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRL--DRNQLKS----LPPR 127
Query: 161 VFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCG 220
VF D L L L L N + +LP +F L SL L L N+L V +F
Sbjct: 128 VF-DSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLT----- 181
Query: 221 INLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGN 255
L+ L L NN +P F L +L+ L LQ N
Sbjct: 182 -ELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 139 bits (352), Expect = 6e-36
Identities = 55/237 (23%), Positives = 88/237 (37%), Gaps = 46/237 (19%)
Query: 768 TCPNNCTCYHDVSWEANVIDCSTGGYDNQL---PPRIPMDATELYLDGNRIPVVGSH-SF 823
+CP NC C +N++ CS QL P +P L L N + + + +
Sbjct: 11 SCPANCLCA------SNILSCS----KQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTP 60
Query: 824 IGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQ 883
L L L+ +H+ I ++ F + L L L N L + + F L+ L L L
Sbjct: 61 TRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLY 120
Query: 884 YNKIIYISNRTFLSLTHLKVLQLDHNRITSF----------------------------- 914
N I+ + F + L+ L L N+I+ F
Sbjct: 121 NNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPL 180
Query: 915 -AVWHLSS-QIQSITLTSNPWSCDCDFTEKFRDYLQRSRSSVHDI-SQIRCMTGSEV 968
+ L + + L +NP CDC + F + R SSV D + CM ++
Sbjct: 181 TDLQKLPAWVKNGLYLHNNPLECDCKLYQLFSHWQYRQLSSVMDFQEDLYCMHSKKL 237
Score = 129 bits (325), Expect = 2e-32
Identities = 49/247 (19%), Positives = 97/247 (39%), Gaps = 14/247 (5%)
Query: 296 KEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKM 355
+ + + + + +LDLS+N L+ + L L L +++N +
Sbjct: 21 NILSCSKQQLPNVPQSLPSYTA---LLDLSHNNLSRLRAEWT-PTRLTNLHSLLLSHNHL 76
Query: 356 NKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLT 415
N + S F + L+ L L +N + ++ F+ L L L++ NN + ++ N+ + +
Sbjct: 77 NFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMA 136
Query: 416 ALSVLSLDNNELEYIEENALKNS---TSLQDFHLNGNKLTEIPK-VLRNLHSLK--TLDL 469
L L L N++ +K+ L L+ NKL ++P L+ L + L L
Sbjct: 137 QLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYL 196
Query: 470 GDNLIT----EINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKV 525
+N + S QL+ + + ++ + + L N + K
Sbjct: 197 HNNPLECDCKLYQLFSHWQYRQLSSVMDFQEDLYCMHSKKLHNIFSLDFFNCSEYKESAW 256
Query: 526 EAGTFDN 532
EA D
Sbjct: 257 EAHLGDT 263
Score = 114 bits (287), Expect = 2e-27
Identities = 47/187 (25%), Positives = 83/187 (44%), Gaps = 15/187 (8%)
Query: 168 SLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNV-ATFSFSNYDTARCGINLRVL 226
+ L S + +P ++ + L+L+ N LS + A ++ + NL L
Sbjct: 19 ASNILSCSKQQLPNVPQSLP---SYTALLDLSHNNLSRLRAEWTPTRL------TNLHSL 69
Query: 227 DLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPP 286
LS+N + + +E F + L+ L L N L L + L +L VL L N++V +
Sbjct: 70 LLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDR 129
Query: 287 ELFNQSRDLKEVYLQNNSINVLAPGIF---NVLTQLIVLDLSNNELTEEWVNAATFSGLH 343
F L+++YL N I+ + N L +L++LDLS+N+L + + L
Sbjct: 130 NAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK--LPLTDLQKLP 187
Query: 344 RLVVLNI 350
V +
Sbjct: 188 AWVKNGL 194
Score = 112 bits (282), Expect = 1e-26
Identities = 58/332 (17%), Positives = 105/332 (31%), Gaps = 84/332 (25%)
Query: 445 HLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEIN-NLSLNSLHQLAGLRLTENNISNISK 503
+ +L +P+ L + LDL N ++ + + L L L L+ N+++ IS
Sbjct: 24 SCSKQQLPNVPQSLPS--YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISS 81
Query: 504 GVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLN 563
F + L L+L+SN + ++ F + L
Sbjct: 82 EAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQAL--------------------------- 114
Query: 564 ISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNA 623
+ L ++ N I + F+ + +L
Sbjct: 115 ------------------EVLLLYNNHIVVVDRNA----------FE----DMAQLQ--- 139
Query: 624 IPHSVENLFLTNNLISKVQPYTFFMK---PNLTRVDLVGNRLKNINQTALRISPLPSHKN 680
L+L+ N IS+ P L +DL N+LK + T L+ P
Sbjct: 140 ------KLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNG 193
Query: 681 IPDFYIGENPFQCDCNMQWLQSYSVNKERNKPNLVDLDTVTCKLLYNRANPAILLKEAHS 740
+ Y+ NP +CDC + L S+ ++ + + + C + L
Sbjct: 194 L---YLHNNPLECDCKLYQLFSHWQYRQLSSVMDFQ-EDLYC------MHSKKLHNIFSL 243
Query: 741 NQFLCEYETNCAPLCHCCDFDACDCEMTCPNN 772
+ F C A H D C+
Sbjct: 244 DFFNCSEYKESAWEAHLGDTLTIRCDTKQQGM 275
Score = 106 bits (267), Expect = 7e-25
Identities = 49/169 (28%), Positives = 75/169 (44%), Gaps = 19/169 (11%)
Query: 151 STMSLDISHNVFT--------DELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNK 202
T LD+SHN + L +L SL LS N + + F P+ +L YL+L+ N
Sbjct: 40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH 99
Query: 203 LSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLAD 262
L + F FS+ L VL L NN + F +++LQ+LYL N ++
Sbjct: 100 LHTLDEFLFSDL------QALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPV 153
Query: 263 HA---LDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKE--VYLQNNSIN 306
+ L L +L+LS N L +P + + +YL NN +
Sbjct: 154 ELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202
Score = 106 bits (266), Expect = 1e-24
Identities = 38/165 (23%), Positives = 69/165 (41%), Gaps = 12/165 (7%)
Query: 438 STSLQDFHLNGNKLTEIPK--VLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTE 495
+ L+ N L+ + L +L +L L N + I++ + + L L L+
Sbjct: 38 PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97
Query: 496 NNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDI-GGLF- 553
N++ + + +F L L +L L +N I V+ F++ + L + L N ++ L
Sbjct: 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIK 157
Query: 554 --PKLPNLVWLNISENLL-----EWFDYALIPADLQWLDIHGNQI 591
KLP L+ L++S N L L L +H N +
Sbjct: 158 DGNKLPKLMLLDLSSNKLKKLPLTDLQ-KLPAWVKNGLYLHNNPL 201
Score = 96.5 bits (240), Expect = 2e-21
Identities = 47/172 (27%), Positives = 67/172 (38%), Gaps = 17/172 (9%)
Query: 113 DLKDLSVEFCKIGNLSAG-SFRGLRKLKTLTLRTHNTDWSTMSLDISHNVFTDELQSLES 171
L + + L A + L L +L L HN IS F + +L
Sbjct: 40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLS-HNHLNF-----ISSEAF-VPVPNLRY 92
Query: 172 LDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNN 231
LDLS N + TL + +F LQ+L L L N + V +F + L+ L LS N
Sbjct: 93 LDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDM------AQLQKLYLSQN 146
Query: 232 SFDSLPAEGF---SRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNN 280
P E ++L +L L L N L L L L + L ++N
Sbjct: 147 QISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHN 198
Score = 95.7 bits (238), Expect = 5e-21
Identities = 41/159 (25%), Positives = 66/159 (41%), Gaps = 15/159 (9%)
Query: 101 SSLSPG-SFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSL-DIS 158
S L + L +L L + + +S+ +F + L+ L L + N L +
Sbjct: 52 SRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDL-SSN------HLHTLD 104
Query: 159 HNVFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTAR 218
+F +LQ+LE L L N I + F + L L L+QN++S + +
Sbjct: 105 EFLF-SDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLP 163
Query: 219 CGINLRVLDLSNNSFDSLPAEGFSRLSRLQE--LYLQGN 255
L +LDLS+N LP +L + LYL N
Sbjct: 164 ---KLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling
protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15
b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Length = 605
Score = 144 bits (364), Expect = 7e-36
Identities = 65/280 (23%), Positives = 115/280 (41%), Gaps = 20/280 (7%)
Query: 295 LKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNK 354
+ E + I + P + + I +L +T+ T + L+ + + +
Sbjct: 1 MGETITVSTPIKQIFP--DDAFAETIKDNLKKKSVTDA----VTQNELNSIDQIIANNSD 54
Query: 355 MNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSL 414
+ + + L + L L N++ I +L NL L + NK+K + SL L
Sbjct: 55 IKSVQG--IQYLPNVTKLFLNGNKLTDI--KPLTNLKNLGWLFLDENKIKDLS--SLKDL 108
Query: 415 TALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLI 474
L LSL++N + I L + L+ +L NK+T+I VL L L TL L DN I
Sbjct: 109 KKLKSLSLEHNGISDIN--GLVHLPQLESLYLGNNKITDIT-VLSRLTKLDTLSLEDNQI 165
Query: 475 TEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNS 534
++I L+ L +L L L++N+IS++ L L +L L S + N
Sbjct: 166 SDIVPLA--GLTKLQNLYLSKNHISDLR--ALAGLKNLDVLELFSQECLNKPINHQSNLV 221
Query: 535 NLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDY 574
++ L + + N+ +L E+ +
Sbjct: 222 VPNTVKNTDGSLVTPEIISDD-GDYEKPNVKWHLPEFTNE 260
Score = 101 bits (253), Expect = 4e-22
Identities = 57/352 (16%), Positives = 113/352 (32%), Gaps = 48/352 (13%)
Query: 111 LIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHNVFTD-----E 165
+ +++ + + +L ++ + +++
Sbjct: 20 FAETIKDNLKKKSVTDAV-----TQNELNSID-----------QIIANNSDIKSVQGIQY 63
Query: 166 LQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRV 225
L ++ L L+ N + + L++L +L L +NK+ +++ S + L+
Sbjct: 64 LPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLS--SLKDLK------KLKS 113
Query: 226 LDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIP 285
L L +N + G L +L+ LYL N +T + L L L L+L N + +I
Sbjct: 114 LSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV 169
Query: 286 PELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRL 345
P L+ +YL N I+ L L L VL+L + E + +N L
Sbjct: 170 P--LAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKPINH-----QSNL 220
Query: 346 VVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKR 405
VV N N D S+ E ++ +S + ++ K K
Sbjct: 221 VVPNTVKN----TDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKA 276
Query: 406 IESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKV 457
+ + + I+ +
Sbjct: 277 RFHGRVTQPLKEVYTVSYDVDGTVIKTKVEAGTRITAPKPPTKQGYVFKGWY 328
Score = 70.9 bits (173), Expect = 1e-12
Identities = 37/126 (29%), Positives = 64/126 (50%), Gaps = 8/126 (6%)
Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
T+L+L+GN++ + K L LFL+ + ++ + + LK+L L L+ N +++
Sbjct: 68 TKLFLNGNKLTDI--KPLTNLKNLGWLFLDENKIKDLSS--LKDLKKLKSLSLEHNGISD 123
Query: 866 IRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSSQIQS 925
I G L L LYL NKI I+ LT L L L+ N+I+ +++Q+
Sbjct: 124 ING--LVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDIVPLAGLTKLQN 179
Query: 926 ITLTSN 931
+ L+ N
Sbjct: 180 LYLSKN 185
Score = 63.6 bits (154), Expect = 3e-10
Identities = 27/108 (25%), Positives = 50/108 (46%), Gaps = 8/108 (7%)
Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
+ L + + + + + + N+S ++++ L + L L+ N+LT+
Sbjct: 24 IKDNLKKKSVTDAVTQNEL--NSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTD 79
Query: 866 IRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITS 913
I+ L+NL L+L NKI +S+ L LK L L+HN I+
Sbjct: 80 IKP--LTNLKNLGWLFLDENKIKDLSS--LKDLKKLKSLSLEHNGISD 123
Score = 55.5 bits (133), Expect = 8e-08
Identities = 23/126 (18%), Positives = 44/126 (34%), Gaps = 6/126 (4%)
Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
LYL N+I + KL L L + + I GL +L L L N +++
Sbjct: 134 ESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD 189
Query: 866 IRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSSQIQS 925
+R L+NL L L + + +L ++ + + + +
Sbjct: 190 LRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEK 247
Query: 926 ITLTSN 931
+ +
Sbjct: 248 PNVKWH 253
Score = 41.6 bits (97), Expect = 0.001
Identities = 10/82 (12%), Positives = 24/82 (29%), Gaps = 7/82 (8%)
Query: 850 LKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHN 909
+ E I + +I + + L+ + T L + + +++
Sbjct: 1 MGETI---TVSTPIKQIFP--DDAFAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNS 53
Query: 910 RITSFAVWHLSSQIQSITLTSN 931
I S + + L N
Sbjct: 54 DIKSVQGIQYLPNVTKLFLNGN 75
Score = 30.8 bits (69), Expect = 3.0
Identities = 5/79 (6%), Positives = 23/79 (29%), Gaps = 9/79 (11%)
Query: 611 ASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTAL 670
S + ++ + L ++ ++ ++ + +K+
Sbjct: 6 TVSTPIKQIFPDDAFAETIKDNLKKKSVTDAVTQNEL--NSIDQIIANNSDIKS------ 57
Query: 671 RISPLPSHKNIPDFYIGEN 689
+ + N+ ++ N
Sbjct: 58 -VQGIQYLPNVTKLFLNGN 75
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor
complex, developmental protein, domain, roundabout,
chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Length = 220
Score = 134 bits (339), Expect = 1e-35
Identities = 64/228 (28%), Positives = 103/228 (45%), Gaps = 16/228 (7%)
Query: 768 TCPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRK 827
CP CTC + N++DC G +P +P TE+ L+ N I V+ +F K
Sbjct: 4 HCPAACTCSN------NIVDCRGKGLTE-IPTNLPETITEIRLEQNTIKVIPPGAFSPYK 56
Query: 828 KLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKI 887
KL+ + L+++ + + F GL+ L L L N++TE+ FE L +L+ L L NKI
Sbjct: 57 KLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKI 116
Query: 888 IYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSS--QIQSITLTSNPWSCDCDFTEKFRD 945
+ F L +L +L L N++ + A S IQ++ L NP+ CDC D
Sbjct: 117 NCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHLKW-LAD 175
Query: 946 YLQRSRSSVHDISQIRCMTGSEVGFTIMRTVIPS---CNVVSTNVSSH 990
YL + S RC + + + + C+ + + H
Sbjct: 176 YLHTNPIET---SGARCTSPRRLANKRIGQIKSKKFRCSAAAHHHHHH 220
Score = 110 bits (278), Expect = 1e-27
Identities = 31/127 (24%), Positives = 63/127 (49%), Gaps = 1/127 (0%)
Query: 347 VLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRI 406
+ + N + + F +L+ + L NNQI + + F L +L++L++ NK+ +
Sbjct: 36 EIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITEL 95
Query: 407 ESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPK-VLRNLHSLK 465
+ + L +L +L L+ N++ + +A ++ +L L NKL I K L +++
Sbjct: 96 PKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQ 155
Query: 466 TLDLGDN 472
T+ L N
Sbjct: 156 TMHLAQN 162
Score = 108 bits (272), Expect = 1e-26
Identities = 43/167 (25%), Positives = 76/167 (45%), Gaps = 33/167 (19%)
Query: 283 NIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGL 342
N+P + E+ L+ N+I V+ PG F+ +L +DLSNN+++E
Sbjct: 29 NLPE-------TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISE----------- 70
Query: 343 HRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNK 402
L F+ L L L L N+I + ++ F L +L L+++ NK
Sbjct: 71 ---------------LAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANK 115
Query: 403 LKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGN 449
+ + ++ L L++LSL +N+L+ I + ++Q HL N
Sbjct: 116 INCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162
Score = 108 bits (272), Expect = 1e-26
Identities = 33/128 (25%), Positives = 62/128 (48%), Gaps = 1/128 (0%)
Query: 370 QVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEY 429
+ LE N I+ I F+ L + +SNN++ + ++ L +L+ L L N++
Sbjct: 35 TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITE 94
Query: 430 IEENALKNSTSLQDFHLNGNKLTEIPK-VLRNLHSLKTLDLGDNLITEINNLSLNSLHQL 488
+ ++ + SLQ LN NK+ + ++LH+L L L DN + I + + L +
Sbjct: 95 LPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAI 154
Query: 489 AGLRLTEN 496
+ L +N
Sbjct: 155 QTMHLAQN 162
Score = 105 bits (263), Expect = 2e-25
Identities = 40/132 (30%), Positives = 61/132 (46%), Gaps = 2/132 (1%)
Query: 222 NLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNL 281
+ + L N+ +P FS +L+ + L N ++ LA A GL SL L L N +
Sbjct: 33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92
Query: 282 VNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSG 341
+P LF L+ + L N IN L F L L +L L +N+L + TFS
Sbjct: 93 TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQT--IAKGTFSP 150
Query: 342 LHRLVVLNIAYN 353
L + +++A N
Sbjct: 151 LRAIQTMHLAQN 162
Score = 103 bits (259), Expect = 6e-25
Identities = 38/155 (24%), Positives = 62/155 (40%), Gaps = 25/155 (16%)
Query: 391 SNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNK 450
+ + + N +K I + L + L NN++ + +A + SL L GNK
Sbjct: 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91
Query: 451 LTEIPK-VLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKL 509
+TE+PK + L SL+ L L N I+ + F+ L
Sbjct: 92 ITELPKSLFEGLFSLQLLLLNA------------------------NKINCLRVDAFQDL 127
Query: 510 SVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGN 544
L +L+L NK+Q + GTF + + L N
Sbjct: 128 HNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162
Score = 98.6 bits (246), Expect = 3e-23
Identities = 37/131 (28%), Positives = 61/131 (46%), Gaps = 2/131 (1%)
Query: 439 TSLQDFHLNGNKLTEIP-KVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENN 497
++ + L N + IP L+ +DL +N I+E+ + L L L L N
Sbjct: 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91
Query: 498 ISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDI-GGLFPKL 556
I+ + K +FE L L +L L +NKI + F + NL + L N L I G F L
Sbjct: 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPL 151
Query: 557 PNLVWLNISEN 567
+ +++++N
Sbjct: 152 RAIQTMHLAQN 162
Score = 87.8 bits (218), Expect = 2e-19
Identities = 39/144 (27%), Positives = 68/144 (47%), Gaps = 15/144 (10%)
Query: 113 DLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLD-ISHNVFTDELQSLES 171
+ ++ +E I + G+F +KL+ + L +N + ++ + F L+SL S
Sbjct: 33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLS-NN------QISELAPDAF-QGLRSLNS 84
Query: 172 LDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNN 231
L L N I LP ++F L SL L L NK++ + +F + NL +L L +N
Sbjct: 85 LVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDL------HNLNLLSLYDN 138
Query: 232 SFDSLPAEGFSRLSRLQELYLQGN 255
++ FS L +Q ++L N
Sbjct: 139 KLQTIAKGTFSPLRAIQTMHLAQN 162
Score = 83.2 bits (206), Expect = 5e-18
Identities = 53/256 (20%), Positives = 90/256 (35%), Gaps = 81/256 (31%)
Query: 491 LRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIG 550
+RL +N I I G F L ++L++N+I ++ F
Sbjct: 37 IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQ------------------- 77
Query: 551 GLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFD 610
L +L L ++GN+I+EL + F+
Sbjct: 78 ----GLRSL----------------------NSLVLYGNKITELPK----------SLFE 101
Query: 611 ASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTAL 670
L L L L N I+ ++ F NL + L N+L+ I +
Sbjct: 102 ----GLFSLQ---------LLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTF 148
Query: 671 RISPLPSHKNIPDFYIGENPFQCDCNMQWLQSYSVNKERNKPNLVDLDTVTCKLLYNRAN 730
SPL + + + ++ +NPF CDC+++WL + N ++ C AN
Sbjct: 149 --SPLRAIQTM---HLAQNPFICDCHLKWL------ADYLHTNPIETSGARCTSPRRLAN 197
Query: 731 PAILLKEAHSNQFLCE 746
I + S +F C
Sbjct: 198 KRIG--QIKSKKFRCS 211
Score = 65.1 bits (159), Expect = 1e-11
Identities = 31/101 (30%), Positives = 46/101 (45%), Gaps = 7/101 (6%)
Query: 101 SSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHN 160
S L+P +FQ L L L + KI L F GL L+ L L N + +
Sbjct: 69 SELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLN-ANKINC-----LRVD 122
Query: 161 VFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQN 201
F +L +L L L N + T+ F PL+++ ++L QN
Sbjct: 123 AF-QDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162
Score = 38.5 bits (90), Expect = 0.008
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 610 DASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNI 665
D LTE+ N +P ++ + L N I + P F L R+DL N++ +
Sbjct: 17 DCRGKGLTEIPTN-LPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISEL 71
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex,
GPCR, graves' disea autoimmunity, receptor-autoantibody
complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB:
3g04_C*
Length = 239
Score = 133 bits (337), Expect = 3e-35
Identities = 41/231 (17%), Positives = 86/231 (37%), Gaps = 13/231 (5%)
Query: 294 DLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYN 353
++ + I + P + L L L + + FS L + + ++ +
Sbjct: 12 QEEDFRVTCKDIQRI-PSL---PPSTQTLKLIETHLRT--IPSHAFSNLPNISRIYVSID 65
Query: 354 -KMNKLDSSIFKDLYRLQVLHLENNQ-IESIHRNTFASLSNLHTLIMSNNKLKRI-ESNS 410
+ +L+S F +L ++ + + N + + I + L L L + N LK +
Sbjct: 66 VTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTK 125
Query: 411 LDSLTALSVLSL-DNNELEYIEENALKN-STSLQDFHLNGNKLTEIPKVLRNLHSLKTLD 468
+ S +L + DN + I NA + L N T + N L +
Sbjct: 126 VYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVY 185
Query: 469 LGDN-LITEINNLSLNSLHQ-LAGLRLTENNISNISKGVFEKLSVLTILNL 517
L N +T I+ + ++ + L +++ +++ + E L L N
Sbjct: 186 LNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNT 236
Score = 133 bits (336), Expect = 4e-35
Identities = 39/227 (17%), Positives = 76/227 (33%), Gaps = 12/227 (5%)
Query: 222 NLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNN- 280
++ +P S Q L L L + HA L +++ + +S++
Sbjct: 12 QEEDFRVTCKDIQRIP----SLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVT 67
Query: 281 LVNIPPELFNQSRDLKEVYLQNN-SINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATF 339
L + F + + ++N ++ + P L L L + N L T
Sbjct: 68 LQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM--FPDLTK 125
Query: 340 -SGLHRLVVLNIAYN-KMNKLDSSIFKDLYR-LQVLHLENNQIESIHRNTFASLSNLHTL 396
+L I N M + + F+ L L L NN S+ F
Sbjct: 126 VYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVY 185
Query: 397 IMSNNKLKRIESNSLDSL-TALSVLSLDNNELEYIEENALKNSTSLQ 442
+ N L I+ ++ + + S+L + + + L++ L
Sbjct: 186 LNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELI 232
Score = 122 bits (308), Expect = 3e-31
Identities = 39/235 (16%), Positives = 82/235 (34%), Gaps = 38/235 (16%)
Query: 168 SLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQN-KLSNVATFSFSNYDTARCGINLRVL 226
S ++L L + T+P F L ++S + ++ + L + + SF N + +
Sbjct: 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLS------KVTHI 85
Query: 227 DLSNN-SFDSLPAEGFSRLSRLQELYLQGNILTFLAD-HALDGLNSLTVLNLSVNN-LVN 283
++ N + + + L L+ L + L D + + +L ++ N + +
Sbjct: 86 EIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTS 145
Query: 284 IPPELF-NQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLS-NNELTEEWVNAATFSG 341
IP F + + L NN + FN T+L + L+ N LT ++ F G
Sbjct: 146 IPVNAFQGLCNETLTLKLYNNGFTSVQGYAFN-GTKLDAVYLNKNKYLTV--IDKDAFGG 202
Query: 342 LHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTL 396
++ +L + + ++ L L
Sbjct: 203 VYSG-----------------------PSLLDVSQTSVTALPSKGLEHLKELIAR 234
Score = 107 bits (268), Expect = 6e-26
Identities = 39/243 (16%), Positives = 82/243 (33%), Gaps = 45/243 (18%)
Query: 113 DLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHNVFTDELQSLESL 172
+ L + + + + +F L + + +S +
Sbjct: 32 STQTLKLIETHLRTIPSHAFSNLPNISR--------------IYVSID------------ 65
Query: 173 DLSMNSIWTLPDAIFCPLQSLSYLNLTQNK-LSNVATFSFSNYDTARCGINLRVLDLSNN 231
++ L F L ++++ + + L+ + + L+ L + N
Sbjct: 66 ----VTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKEL------PLLKFLGIFNT 115
Query: 232 SFDSLPAEGF-SRLSRLQELYLQGN-ILTFLADHALDGLNSLTV-LNLSVNNLVNIPPEL 288
P L + N +T + +A GL + T+ L L N ++
Sbjct: 116 GLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYA 175
Query: 289 FNQSRDLKEVYL-QNNSINVLAPGIF-NVLTQLIVLDLSNNELTEEWVNAATFSGLHRLV 346
FN ++ L VYL +N + V+ F V + +LD+S +T + + L L+
Sbjct: 176 FNGTK-LDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA--LPSKGLEHLKELI 232
Query: 347 VLN 349
N
Sbjct: 233 ARN 235
Score = 99.7 bits (249), Expect = 2e-23
Identities = 29/221 (13%), Positives = 80/221 (36%), Gaps = 19/221 (8%)
Query: 439 TSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENN- 497
+DF + + IP + + +TL L + + I + + ++L ++ + ++ +
Sbjct: 11 HQEEDFRVTCKDIQRIPSLPPS---TQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVT 67
Query: 498 ISNISKGVFEKLSVLTILNLASNK-IQKVEAGTFDNNSNLVAIRLDGNYLTDI--GGLFP 554
+ + F LS +T + + + + + ++ L + + L
Sbjct: 68 LQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVY 127
Query: 555 KLPNLVWLNISENL----LEWFDYALIPADLQWLDIHGNQISELGNY-FEIESQLRLTYF 609
L I++N + + + + L ++ N + + Y F + +L
Sbjct: 128 STDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAF---NGTKLDAV 184
Query: 610 DASSNK-LTELTGNA---IPHSVENLFLTNNLISKVQPYTF 646
+ NK LT + +A + L ++ ++ +
Sbjct: 185 YLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGL 225
Score = 93.5 bits (233), Expect = 3e-21
Identities = 27/172 (15%), Positives = 64/172 (37%), Gaps = 18/172 (10%)
Query: 769 CPNNCTCYHDVSWEANVIDCSTGGYDNQLP--PRIPMDATELYLDGNRIPVVGSHSFIGR 826
C C+ + + + P +P L L + + SH+F
Sbjct: 4 SSPPCECHQEED-----FRVT----CKDIQRIPSLPPSTQTLKLIETHLRTIPSHAFSNL 54
Query: 827 KKLQILFLNSS-HVETIHNKTFNGLKELIILRLDDNR-LTEIRGYEFERLENLRELYLQY 884
+ ++++ ++ + + +F L ++ + + + R LT I + L L+ L +
Sbjct: 55 PNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFN 114
Query: 885 NKIIYISNRTFL-SLTHLKVLQLDHN----RITSFAVWHLSSQIQSITLTSN 931
+ + T + S +L++ N I A L ++ ++ L +N
Sbjct: 115 TGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN 166
Score = 72.3 bits (178), Expect = 5e-14
Identities = 29/152 (19%), Positives = 53/152 (34%), Gaps = 13/152 (8%)
Query: 101 SSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSF-RGLRKLKTLTLRTHNTDWSTMSLDISH 159
+ + P + + L LK L + + + L + + S I
Sbjct: 94 TYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTS-----IPV 148
Query: 160 NVFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNK-LSNVATFSFSNYDTAR 218
N F +L L N ++ F + L + L +NK L+ + +F +
Sbjct: 149 NAFQGLCNETLTLKLYNNGFTSVQGYAFNGTK-LDAVYLNKNKYLTVIDKDAFGGVYS-- 205
Query: 219 CGINLRVLDLSNNSFDSLPAEGFSRLSRLQEL 250
+LD+S S +LP++G L L
Sbjct: 206 ---GPSLLDVSQTSVTALPSKGLEHLKELIAR 234
Score = 66.2 bits (162), Expect = 5e-12
Identities = 23/132 (17%), Positives = 51/132 (38%), Gaps = 7/132 (5%)
Query: 806 TELYLDGNRIPVVGSHSFIG--RKKLQILFLNSSHVETIHNKTFNGL-KELIILRLDDNR 862
L + + + + + + ++ ++ +I F GL E + L+L +N
Sbjct: 108 KFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG 167
Query: 863 LTEIRGYEFERLENLRELYLQYNKII-YISNRTFLSL-THLKVLQLDHNRITSFAVWHLS 920
T ++GY F L +YL NK + I F + + +L + +T+ L
Sbjct: 168 FTSVQGYAFNGT-KLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLE 226
Query: 921 SQIQSITLTSNP 932
++ + +
Sbjct: 227 H-LKELIARNTW 237
Score = 55.8 bits (135), Expect = 2e-08
Identities = 21/99 (21%), Positives = 35/99 (35%), Gaps = 7/99 (7%)
Query: 101 SSLSPGSFQTLI-DLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISH 159
+S+ +FQ L + L + ++ +F G KL + L + I
Sbjct: 144 TSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGT-KLDAVYLNKNKYLTV-----IDK 197
Query: 160 NVFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNL 198
+ F LD+S S+ LP L+ L N
Sbjct: 198 DAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNT 236
Score = 44.6 bits (106), Expect = 8e-05
Identities = 23/201 (11%), Positives = 54/201 (26%), Gaps = 73/201 (36%)
Query: 462 HSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASN- 520
H + + I I +L + L+L E ++ I F L ++ + ++ +
Sbjct: 11 HQEEDFRVTCKDIQRIPSLPPS----TQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDV 66
Query: 521 KIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYALIPAD 580
+Q++E+ +F N L + + I
Sbjct: 67 TLQQLESHSFYN-----------------------LSKVTHIEIRNT------------- 90
Query: 581 LQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPHSVENLFLTNNLISK 640
++ + + L EL ++ L + N +
Sbjct: 91 --------RNLTYI-----------------DPDALKELP------LLKFLGIFNTGLKM 119
Query: 641 VQPYTFFMK-PNLTRVDLVGN 660
T +++ N
Sbjct: 120 FPDLTKVYSTDIFFILEITDN 140
Score = 41.1 bits (97), Expect = 0.001
Identities = 11/81 (13%), Positives = 31/81 (38%), Gaps = 9/81 (11%)
Query: 856 LRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHN----RI 911
R+ + I + + L L + I + F +L ++ + + + ++
Sbjct: 16 FRVTCKDIQRIPS----LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQL 71
Query: 912 TSFAVWHLSSQIQSITLTSNP 932
S + ++LS + I + +
Sbjct: 72 ESHSFYNLSK-VTHIEIRNTR 91
Score = 40.8 bits (96), Expect = 0.002
Identities = 14/93 (15%), Positives = 32/93 (34%), Gaps = 5/93 (5%)
Query: 577 IPADLQWLDIHGNQISEL-GNYFEIESQLRLTYFDASSNKLTELTGNAIPH--SVENLFL 633
+P Q L + + + + F + Y L +L ++ + V ++ +
Sbjct: 29 LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVS-IDVTLQQLESHSFYNLSKVTHIEI 87
Query: 634 TNN-LISKVQPYTFFMKPNLTRVDLVGNRLKNI 665
N ++ + P P L + + LK
Sbjct: 88 RNTRNLTYIDPDALKELPLLKFLGIFNTGLKMF 120
Score = 36.1 bits (84), Expect = 0.046
Identities = 10/65 (15%), Positives = 26/65 (40%), Gaps = 3/65 (4%)
Query: 606 LTYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGN-RLKN 664
F + + + +P S + L L + + + F PN++R+ + + L+
Sbjct: 13 EEDFRVTCKDIQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQ 70
Query: 665 INQTA 669
+ +
Sbjct: 71 LESHS 75
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis,
glycoprotein, secreted, chemotaxis, LRR structural
protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Length = 220
Score = 132 bits (335), Expect = 4e-35
Identities = 52/205 (25%), Positives = 95/205 (46%), Gaps = 16/205 (7%)
Query: 768 TCPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSH-SFIGR 826
CP C C +DCS + +P IP EL L+ N V+ + F
Sbjct: 4 ACPEKCRCE------GTTVDCSNQKLNK-IPEHIPQYTAELRLNNNEFTVLEATGIFKKL 56
Query: 827 KKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNK 886
+L+ + +++ + I F G + + L NRL ++ F+ LE+L+ L L+ N+
Sbjct: 57 PQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNR 116
Query: 887 IIYISNRTFLSLTHLKVLQLDHNRITSF---AVWHLSSQIQSITLTSNPWSCDCDFTEKF 943
I + N +F+ L+ +++L L N+IT+ A L S + ++ L +NP++C+C
Sbjct: 117 ITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHS-LSTLNLLANPFNCNCYLAW-L 174
Query: 944 RDYLQRSRSSVHDISQIRCMTGSEV 968
++L++ R RC +
Sbjct: 175 GEWLRKKRIVT---GNPRCQKPYFL 196
Score = 108 bits (272), Expect = 1e-26
Identities = 33/129 (25%), Positives = 66/129 (51%), Gaps = 1/129 (0%)
Query: 321 VLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIE 380
L L+NNE T F L +L +N + NK+ ++ F+ + + L +N++E
Sbjct: 36 ELRLNNNEFTVLEATGI-FKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE 94
Query: 381 SIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTS 440
++ F L +L TL++ +N++ + ++S L+++ +LSL +N++ + A S
Sbjct: 95 NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHS 154
Query: 441 LQDFHLNGN 449
L +L N
Sbjct: 155 LSTLNLLAN 163
Score = 108 bits (271), Expect = 1e-26
Identities = 33/128 (25%), Positives = 67/128 (52%), Gaps = 2/128 (1%)
Query: 347 VLNIAYNKMNKLDSS-IFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKR 405
L + N+ L+++ IFK L +L+ ++ NN+I I F S ++ +++++N+L+
Sbjct: 36 ELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLEN 95
Query: 406 IESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPK-VLRNLHSL 464
++ L +L L L +N + + ++ +S++ L N++T + LHSL
Sbjct: 96 VQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSL 155
Query: 465 KTLDLGDN 472
TL+L N
Sbjct: 156 STLNLLAN 163
Score = 101 bits (253), Expect = 4e-24
Identities = 39/133 (29%), Positives = 67/133 (50%), Gaps = 3/133 (2%)
Query: 222 NLRVLDLSNNSFDSLPAEG-FSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNN 280
L L+NN F L A G F +L +L+++ N +T + + A +G + + + L+ N
Sbjct: 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92
Query: 281 LVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFS 340
L N+ ++F LK + L++N I + F L+ + +L L +N++T V F
Sbjct: 93 LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITT--VAPGAFD 150
Query: 341 GLHRLVVLNIAYN 353
LH L LN+ N
Sbjct: 151 TLHSLSTLNLLAN 163
Score = 99.7 bits (249), Expect = 1e-23
Identities = 41/177 (23%), Positives = 62/177 (35%), Gaps = 50/177 (28%)
Query: 370 QVLHLENNQIESIHRN-TFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELE 428
L L NN+ + F L L + SNNK+ IE + + + ++ +
Sbjct: 35 AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEI-------- 86
Query: 429 YIEENALKNSTSLQDFHLNGNKLTEIP-KVLRNLHSLKTLDLGDNLITEINNLSLNSLHQ 487
L N+L + K+ + L SLKTL L N IT +
Sbjct: 87 ----------------LLTSNRLENVQHKMFKGLESLKTLMLRSNRITCV---------- 120
Query: 488 LAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGN 544
F LS + +L+L N+I V G FD +L + L N
Sbjct: 121 --------------GNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163
Score = 99.7 bits (249), Expect = 1e-23
Identities = 33/138 (23%), Positives = 63/138 (45%), Gaps = 7/138 (5%)
Query: 167 QSLESLDLSMNSIWTL-PDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRV 225
Q L L+ N L IF L L +N + NK++++ +F +
Sbjct: 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGA------SGVNE 85
Query: 226 LDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIP 285
+ L++N +++ + F L L+ L L+ N +T + + + GL+S+ +L+L N + +
Sbjct: 86 ILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVA 145
Query: 286 PELFNQSRDLKEVYLQNN 303
P F+ L + L N
Sbjct: 146 PGAFDTLHSLSTLNLLAN 163
Score = 98.2 bits (245), Expect = 4e-23
Identities = 37/133 (27%), Positives = 56/133 (42%), Gaps = 7/133 (5%)
Query: 196 LNLTQNKLSNV-ATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQG 254
L L N+ + + AT F LR ++ SNN + F S + E+ L
Sbjct: 37 LRLNNNEFTVLEATGIFKKLP------QLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90
Query: 255 NILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFN 314
N L + GL SL L L N + + + F ++ + L +N I +APG F+
Sbjct: 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFD 150
Query: 315 VLTQLIVLDLSNN 327
L L L+L N
Sbjct: 151 TLHSLSTLNLLAN 163
Score = 95.1 bits (237), Expect = 5e-22
Identities = 35/132 (26%), Positives = 61/132 (46%), Gaps = 3/132 (2%)
Query: 439 TSLQDFHLNGNKLTEIPK--VLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTEN 496
+ LN N+ T + + + L L+ ++ +N IT+I + + + LT N
Sbjct: 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91
Query: 497 NISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDI-GGLFPK 555
+ N+ +F+ L L L L SN+I V +F S++ + L N +T + G F
Sbjct: 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDT 151
Query: 556 LPNLVWLNISEN 567
L +L LN+ N
Sbjct: 152 LHSLSTLNLLAN 163
Score = 83.2 bits (206), Expect = 6e-18
Identities = 47/212 (22%), Positives = 75/212 (35%), Gaps = 76/212 (35%)
Query: 491 LRLTENNISNI-SKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDI 549
LRL N + + + G+F+KL L +N ++NKI +E G F+ S + I L N L ++
Sbjct: 37 LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENV 96
Query: 550 -GGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTY 608
+F L + L+ L + N+I+ +GN
Sbjct: 97 QHKMFKGLES----------------------LKTLMLRSNRITCVGNDS---------- 124
Query: 609 FDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQT 668
F L+ + L L +N I+ V P F
Sbjct: 125 FI----GLSSVR---------LLSLYDNQITTVAPGAF---------------------- 149
Query: 669 ALRISPLPSHKNIPDFYIGENPFQCDCNMQWL 700
L S + + NPF C+C + WL
Sbjct: 150 ----DTLHSLSTL---NLLANPFNCNCYLAWL 174
Score = 69.7 bits (171), Expect = 3e-13
Identities = 37/136 (27%), Positives = 64/136 (47%), Gaps = 16/136 (11%)
Query: 101 SSLSP-GSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSL-DIS 158
+ L G F+ L L+ ++ KI ++ G+F G + + L T N L ++
Sbjct: 45 TVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILL-TSN------RLENVQ 97
Query: 159 HNVFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTAR 218
H +F L+SL++L L N I + + F L S+ L+L N+++ VA +F
Sbjct: 98 HKMF-KGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLH--- 153
Query: 219 CGINLRVLDLSNNSFD 234
+L L+L N F+
Sbjct: 154 ---SLSTLNLLANPFN 166
Score = 36.2 bits (84), Expect = 0.039
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 610 DASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMK-PNLTRVDLVGNRLKNI 665
D S+ KL ++ + IP L L NN + ++ F K P L +++ N++ +I
Sbjct: 17 DCSNQKLNKIPEH-IPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDI 72
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.6A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A*
2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Length = 291
Score = 135 bits (341), Expect = 4e-35
Identities = 65/275 (23%), Positives = 111/275 (40%), Gaps = 20/275 (7%)
Query: 296 KEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKM 355
E I + + + I +L +T+ T + L+ + + + +
Sbjct: 5 SETITVPTPIKQIFS--DDAFAETIKDNLKKKSVTDA----VTQNELNSIDQIIANNSDI 58
Query: 356 NKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLT 415
+ + L + L L N++ I A+L NL L + NK+K + S L L
Sbjct: 59 KSVQG--IQYLPNVTKLFLNGNKLTDI--KPLANLKNLGWLFLDENKVKDLSS--LKDLK 112
Query: 416 ALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLIT 475
L LSL++N + I L + L+ +L NK+T+I VL L L TL L DN I+
Sbjct: 113 KLKSLSLEHNGISDIN--GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQIS 169
Query: 476 EINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSN 535
+I L+ L +L L L++N+IS++ L L +L L S + N
Sbjct: 170 DIVPLA--GLTKLQNLYLSKNHISDLR--ALAGLKNLDVLELFSQECLNKPINHQSNLVV 225
Query: 536 LVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLE 570
++ L + + N+ +L E
Sbjct: 226 PNTVKNTDGSLVTPEIIS-DDGDYEKPNVKWHLPE 259
Score = 127 bits (321), Expect = 2e-32
Identities = 61/281 (21%), Positives = 111/281 (39%), Gaps = 19/281 (6%)
Query: 265 LDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDL 324
D NL ++ + N+ + ++ N+ I + L + L L
Sbjct: 20 DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFL 75
Query: 325 SNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHR 384
+ N+LT + + L L L + NK+ L S KDL +L+ L LE+N I I
Sbjct: 76 NGNKLT----DIKPLANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHNGISDI-- 127
Query: 385 NTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDF 444
N L L +L + NNK+ I L LT L LSL++N++ I L T LQ+
Sbjct: 128 NGLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDIV--PLAGLTKLQNL 183
Query: 445 HLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKG 504
+L+ N ++++ + L L +L L+L ++L ++ T+ ++
Sbjct: 184 YLSKNHISDL-RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEI- 241
Query: 505 VFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNY 545
N+ + + +F + + +
Sbjct: 242 -ISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARF 281
Score = 110 bits (278), Expect = 8e-27
Identities = 58/286 (20%), Positives = 109/286 (38%), Gaps = 28/286 (9%)
Query: 164 DELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINL 223
D +L S+ L S+ + + + +V + N+
Sbjct: 21 DAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQGIQYLP--------NV 70
Query: 224 RVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVN 283
L L+ N + + + L L L+L N + L+ +L L L L+L N + +
Sbjct: 71 TKLFLNGNKLTDI--KPLANLKNLGWLFLDENKVKDLS--SLKDLKKLKSLSLEHNGISD 126
Query: 284 IPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLH 343
I L+ +YL NN I + + LT+L L L +N+++ + +GL
Sbjct: 127 ING--LVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQIS----DIVPLAGLT 178
Query: 344 RLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKL 403
+L L ++ N ++ L + L L VL L + + + N ++L +T+ ++ L
Sbjct: 179 KLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 236
Query: 404 KRIESNS----LDSLTALSVLSLDNNELEYIEENALKNSTSLQDFH 445
E S + L NE+ +I + + FH
Sbjct: 237 VTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFH 282
Score = 102 bits (255), Expect = 8e-24
Identities = 43/252 (17%), Positives = 90/252 (35%), Gaps = 37/252 (14%)
Query: 420 LSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINN 479
++ I + +L +T+ L+S+ + ++ I +
Sbjct: 7 TITVPTPIKQIF--SDDAFAETIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSVQG 63
Query: 480 LSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAI 539
+ L + L L N +++I L L L L NK++ + + + L ++
Sbjct: 64 IQ--YLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKDLSS--LKDLKKLKSL 117
Query: 540 RLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFE 599
L+ N ++DI GL LP L L + N+I+++
Sbjct: 118 SLEHNGISDINGL-VHLPQLESLYLG----------------------NNKITDITV--- 151
Query: 600 IESQLRLTYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVG 659
+ +L N+++++ A ++NL+L+ N IS ++ NL ++L
Sbjct: 152 LSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFS 209
Query: 660 NRLKNINQTALR 671
N
Sbjct: 210 QECLNKPINHQS 221
Score = 66.6 bits (163), Expect = 9e-12
Identities = 38/126 (30%), Positives = 64/126 (50%), Gaps = 8/126 (6%)
Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
T+L+L+GN++ + K L LFL+ + V+ + + LK+L L L+ N +++
Sbjct: 71 TKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHNGISD 126
Query: 866 IRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSSQIQS 925
I G L L LYL NKI I+ LT L L L+ N+I+ +++Q+
Sbjct: 127 ING--LVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDIVPLAGLTKLQN 182
Query: 926 ITLTSN 931
+ L+ N
Sbjct: 183 LYLSKN 188
Score = 58.5 bits (142), Expect = 3e-09
Identities = 26/109 (23%), Positives = 48/109 (44%), Gaps = 8/109 (7%)
Query: 805 ATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLT 864
+ L + + + + N+S ++++ L + L L+ N+LT
Sbjct: 26 TIKDNLKKKSVTDA--VTQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLT 81
Query: 865 EIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITS 913
+I+ L+NL L+L NK+ +S+ L LK L L+HN I+
Sbjct: 82 DIKP--LANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHNGISD 126
Score = 53.5 bits (129), Expect = 2e-07
Identities = 23/108 (21%), Positives = 40/108 (37%), Gaps = 6/108 (5%)
Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
LYL N+I + KL L L + + I GL +L L L N +++
Sbjct: 137 ESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD 192
Query: 866 IRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITS 913
+R L+NL L L + + +L ++ + +
Sbjct: 193 LRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT 238
Score = 45.8 bits (109), Expect = 4e-05
Identities = 20/111 (18%), Positives = 45/111 (40%), Gaps = 12/111 (10%)
Query: 579 ADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPHSVENLFLTNNLI 638
A+ ++ +++ E+ S + A+++ + + G +V LFL N +
Sbjct: 24 AETIKDNLKKKSVTDAVTQNELNS---IDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKL 80
Query: 639 SKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHKNIPDFYIGEN 689
+ ++P NL + L N++K+ +S L K + + N
Sbjct: 81 TDIKPLANL--KNLGWLFLDENKVKD-------LSSLKDLKKLKSLSLEHN 122
Score = 41.6 bits (98), Expect = 0.001
Identities = 18/87 (20%), Positives = 31/87 (35%), Gaps = 4/87 (4%)
Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
L L+ N+I + G KLQ L+L+ +H+ + + GLK L +L L
Sbjct: 159 DTLSLEDNQISDI--VPLAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLN 214
Query: 866 IRGYEFERLENLRELYLQYNKIIYISN 892
L + ++
Sbjct: 215 KPINHQSNLVVPNTVKNTDGSLVTPEI 241
Score = 35.0 bits (81), Expect = 0.11
Identities = 8/74 (10%), Positives = 21/74 (28%), Gaps = 4/74 (5%)
Query: 858 LDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVW 917
+ +I + + L+ + T L + + +++ I S
Sbjct: 9 TVPTPIKQIFS--DDAFAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSVQGI 64
Query: 918 HLSSQIQSITLTSN 931
+ + L N
Sbjct: 65 QYLPNVTKLFLNGN 78
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, LRR, N- and
C-terminal helices; 2.00A {Xanthomonas campestris PV}
Length = 328
Score = 135 bits (342), Expect = 7e-35
Identities = 56/332 (16%), Positives = 114/332 (34%), Gaps = 30/332 (9%)
Query: 166 LQSLESLDLS-MNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLR 224
E+L ++ D + Q + N+ + + SN N +
Sbjct: 11 SSGRENLYFQGSTALRPYHDVL-SQWQRHYNADR--NRWHSAWRQANSN--------NPQ 59
Query: 225 VLDLSNNSFDSLPAE-GFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVN 283
+ + + + + L L+ L D L+ L + + L+
Sbjct: 60 IETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPD-QAFRLSHLQHMTIDAAGLME 118
Query: 284 IPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLS-NNELTE------EWVNA 336
+P + + L+ + L N + L I + L +L L + ELTE +
Sbjct: 119 LPDTMQQFAG-LETLTLARNPLRALPASIAS-LNRLRELSIRACPELTELPEPLASTDAS 176
Query: 337 ATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTL 396
GL L L + + + L +SI L L+ L + N+ + ++ L L L
Sbjct: 177 GEHQGLVNLQSLRLEWTGIRSLPASIAN-LQNLKSLKIRNSPLSALG-PAIHHLPKLEEL 234
Query: 397 IMS-NNKLKRIESNSLDSLTALSVLSL-DNNELEYIEENALKNSTSLQDFHLNGN-KLTE 453
+ L+ L L L D + L + + + T L+ L G L+
Sbjct: 235 DLRGCTALRNY-PPIFGGRAPLKRLILKDCSNLLTLPLD-IHRLTQLEKLDLRGCVNLSR 292
Query: 454 IPKVLRNLHSLKTLDLGDNLITEINNLSLNSL 485
+P ++ L + + + +L +++ +
Sbjct: 293 LPSLIAQLPANCIILVPPHLQAQLDQHRPVAR 324
Score = 121 bits (306), Expect = 4e-30
Identities = 52/316 (16%), Positives = 108/316 (34%), Gaps = 25/316 (7%)
Query: 268 LNSLTVLNLS-VNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSN 326
+ L L L + Y + + + +
Sbjct: 11 SSGRENLYFQGSTALRPYHDVL----SQWQRHYNADRNRWHS-AWRQANSNNPQIETRTG 65
Query: 327 NELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNT 386
L + + V L + + + F+ L LQ + ++ + + +T
Sbjct: 66 RALKAT-ADLLEDATQPGRVALELRSVPLPQFPDQAFR-LSHLQHMTIDAAGLMELP-DT 122
Query: 387 FASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSL-DNNELEYIEEN--------ALKN 437
+ L TL ++ N L+ + S+ SL L LS+ EL + E +
Sbjct: 123 MQQFAGLETLTLARNPLRAL-PASIASLNRLRELSIRACPELTELPEPLASTDASGEHQG 181
Query: 438 STSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENN 497
+LQ L + +P + NL +LK+L + ++ ++ + +++ L +L L L
Sbjct: 182 LVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGP-AIHHLPKLEELDLRGCT 240
Query: 498 -ISNISKGVFEKLSVLTILNLAS-NKIQKVEAGTFDNNSNLVAIRLDGNY-LTDIGGLFP 554
+ N F + L L L + + + + L + L G L+ + L
Sbjct: 241 ALRNYPPI-FGGRAPLKRLILKDCSNLLTLPL-DIHRLTQLEKLDLRGCVNLSRLPSLIA 298
Query: 555 KLPNLVWLNISENLLE 570
+LP + + +L
Sbjct: 299 QLPANCIILVPPHLQA 314
Score = 120 bits (303), Expect = 9e-30
Identities = 53/266 (19%), Positives = 102/266 (38%), Gaps = 32/266 (12%)
Query: 166 LQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRV 225
+L+L + PD F L L ++ + L + + + L
Sbjct: 80 QPGRVALELRSVPLPQFPDQAFR-LSHLQHMTIDAAGLMELPD-TMQQF------AGLET 131
Query: 226 LDLSNNSFDSLPAEGFSRLSRLQELYLQGN---------ILTFLADHALDGLNSLTVLNL 276
L L+ N +LPA + L+RL+EL ++ + + A GL +L L L
Sbjct: 132 LTLARNPLRALPAS-IASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRL 190
Query: 277 SVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLS-NNELTE--EW 333
+ ++P + N LK + ++N+ ++ L P I + L +L LDL L
Sbjct: 191 EWTGIRSLPASIANLQN-LKSLKIRNSPLSALGPAIHH-LPKLEELDLRGCTALRNYPP- 247
Query: 334 VNAATFSGLHRLVVLNIA-YNKMNKLDSSIFKDLYRLQVLHLENN-QIESIHRNTFASLS 391
F G L L + + + L I + L +L+ L L + + + A L
Sbjct: 248 ----IFGGRAPLKRLILKDCSNLLTLPLDIHR-LTQLEKLDLRGCVNLSRLP-SLIAQLP 301
Query: 392 NLHTLIMSNNKLKRIESNSLDSLTAL 417
+++ + +++ + + A
Sbjct: 302 ANCIILVPPHLQAQLDQHRPVARPAE 327
Score = 80.0 bits (198), Expect = 4e-16
Identities = 33/265 (12%), Positives = 73/265 (27%), Gaps = 52/265 (19%)
Query: 369 LQVLHLEN-NQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNEL 427
+ L+ + + H LS ++ + + + + L
Sbjct: 14 RENLYFQGSTALRPYHD----VLSQWQRHYNADRNRWH-SAWRQANSNNPQIETRTGRAL 68
Query: 428 EYIEENALK-NSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLH 486
+ + L L + P L L+ + + + E+ + ++
Sbjct: 69 KATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPD-TMQQFA 127
Query: 487 QLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYL 546
L L L N + + L+ L L++ + L
Sbjct: 128 GLETLTLARNPLRALPAS-IASLNRLRELSIRAC-----------------------PEL 163
Query: 547 TDIGGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRL 606
T +LP ++ L+ +LQ L + I L I + L
Sbjct: 164 T-------ELPE----PLASTDASGEHQGLV--NLQSLRLEWTGIRSLPA--SIANLQNL 208
Query: 607 TYFDASSNKLTELTGNAIPHSVENL 631
++ L+ L ++ +L
Sbjct: 209 KSLKIRNSPLSAL-----GPAIHHL 228
Score = 48.8 bits (117), Expect = 7e-06
Identities = 21/119 (17%), Positives = 49/119 (41%), Gaps = 14/119 (11%)
Query: 806 TELYLDGNRIPVVGSHSFIGR-KKLQILFLNSSHVETIHNKTFNGLKELIILRLDD-NRL 863
+ +D + + + + L+ L L + + + + L L L + L
Sbjct: 107 QHMTIDAAGLMEL--PDTMQQFAGLETLTLARNPLRALPA-SIASLNRLRELSIRACPEL 163
Query: 864 TEI--------RGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSF 914
TE+ E + L NL+ L L++ I + + +L +LK L++ ++ +++
Sbjct: 164 TELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPA-SIANLQNLKSLKIRNSPLSAL 221
Score = 44.9 bits (107), Expect = 9e-05
Identities = 21/120 (17%), Positives = 42/120 (35%), Gaps = 15/120 (12%)
Query: 806 TELYLDGNRIPVVGSHSFIGR-KKLQILFLN---------SSHVETIHNKTFNGLKELII 855
L L N + + + I +L+ L + T + GL L
Sbjct: 130 ETLTLARNPLRAL--PASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQS 187
Query: 856 LRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDH-NRITSF 914
LRL+ + + L+NL+ L ++ + + + L L+ L L + ++
Sbjct: 188 LRLEWTGIRSL-PASIANLQNLKSLKIRNSPLSALGP-AIHHLPKLEELDLRGCTALRNY 245
Score = 44.6 bits (106), Expect = 1e-04
Identities = 13/88 (14%), Positives = 31/88 (35%), Gaps = 3/88 (3%)
Query: 828 KLQILFLNSSHVETIHNKTFNG-LKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNK 886
QI ++ + + + L L L + + RL +L+ + +
Sbjct: 57 NPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPD-QAFRLSHLQHMTIDAAG 115
Query: 887 IIYISNRTFLSLTHLKVLQLDHNRITSF 914
++ + + T L+ L L N + +
Sbjct: 116 LMELPD-TMQQFAGLETLTLARNPLRAL 142
Score = 36.5 bits (85), Expect = 0.043
Identities = 13/91 (14%), Positives = 26/91 (28%), Gaps = 12/91 (13%)
Query: 581 LQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPHSVEN------LFLT 634
Q G + + E +Q + S L + P + +
Sbjct: 58 PQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQF-----PDQAFRLSHLQHMTID 112
Query: 635 NNLISKVQPYTFFMKPNLTRVDLVGNRLKNI 665
+ ++ P T L + L N L+ +
Sbjct: 113 AAGLMEL-PDTMQQFAGLETLTLARNPLRAL 142
Score = 35.3 bits (82), Expect = 0.11
Identities = 18/109 (16%), Positives = 36/109 (33%), Gaps = 5/109 (4%)
Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFL-NSSHVETIHNKTFNGLKELIILRLDD-NRL 863
L + + + + + KL+ L L + + F G L L L D + L
Sbjct: 209 KSLKIRNSPLSAL-GPAIHHLPKLEELDLRGCTALRNYPP-IFGGRAPLKRLILKDCSNL 266
Query: 864 TEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRIT 912
+ + RL L +L L+ + L ++ + +
Sbjct: 267 LTLPL-DIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.8A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1
Length = 308
Score = 132 bits (335), Expect = 4e-34
Identities = 65/307 (21%), Positives = 126/307 (41%), Gaps = 21/307 (6%)
Query: 239 EGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEV 298
L+ ++ + +T L+ +T L+ + I +L +
Sbjct: 13 FPDPALANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTIEG--VQYLNNLIGL 68
Query: 299 YLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKL 358
L++N I LAP LT++ L+LS N L N + +GL + L++ ++ +
Sbjct: 69 ELKDNQITDLAP--LKNLTKITELELSGNPLK----NVSAIAGLQSIKTLDLTSTQITDV 122
Query: 359 DSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALS 418
L LQVL+L+ NQI +I + A L+NL L + N ++ + L +L+ L+
Sbjct: 123 TP--LAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDLTP--LANLSKLT 176
Query: 419 VLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEIN 478
L D+N++ I L + +L + HL N+++++ L N +L + L + IT
Sbjct: 177 TLKADDNKISDIS--PLASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTNQTITNQP 233
Query: 479 NLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVA 538
N+L + + + I+ NL N + ++ N ++
Sbjct: 234 VFYNNNLVVP--NVVKGPSGAPIAPATISDNGTYASPNLTWNLTSFINNVSYTFNQSVTF 291
Query: 539 IRLDGNY 545
+
Sbjct: 292 KNTTVPF 298
Score = 122 bits (307), Expect = 2e-30
Identities = 58/294 (19%), Positives = 116/294 (39%), Gaps = 28/294 (9%)
Query: 164 DELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINL 223
L + + +++ L ++ L+ ++ + + NL
Sbjct: 16 PALANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTIEGVQYL--------NNL 65
Query: 224 RVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVN 283
L+L +N L L+++ EL L GN L + A+ GL S+ L+L+ + +
Sbjct: 66 IGLELKDNQITDL--APLKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITD 121
Query: 284 IPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLH 343
+ P +L+ +YL N I ++P LT L L + N +++ + + L
Sbjct: 122 VTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVS----DLTPLANLS 173
Query: 344 RLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKL 403
+L L NK++ + L L +HL+NNQI + + A+ SNL + ++N +
Sbjct: 174 KLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDV--SPLANTSNLFIVTLTNQTI 229
Query: 404 KRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKV 457
++L + I + ++ + +L N + I V
Sbjct: 230 TNQPVFYNNNLVVP--NVVKGPSGAPIAPATISDNGTYASPNLTWNLTSFINNV 281
Score = 110 bits (276), Expect = 2e-26
Identities = 62/270 (22%), Positives = 106/270 (39%), Gaps = 39/270 (14%)
Query: 397 IMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPK 456
I + I +L ++ + + + + G +T I
Sbjct: 3 ITQPTAINVIFP--DPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIEG 58
Query: 457 VLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILN 516
++ L++L L+L DN IT++ L +L ++ L L+ N + N+S L + L+
Sbjct: 59 -VQYLNNLIGLELKDNQITDLAPLK--NLTKITELELSGNPLKNVS--AIAGLQSIKTLD 113
Query: 517 LASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYAL 576
L S +I V SNL + LD N +T+I L L NL +L+I
Sbjct: 114 LTSTQITDVTP--LAGLSNLQVLYLDLNQITNISPL-AGLTNLQYLSIG----------- 159
Query: 577 IPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPHSVENLFLTNN 636
Q+S+L + + +LT A NK+++++ A ++ + L NN
Sbjct: 160 -----------NAQVSDLTP---LANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNN 205
Query: 637 LISKVQPYTFFMKPNLTRVDLVGNRLKNIN 666
IS V P NL V L + N
Sbjct: 206 QISDVSPLANT--SNLFIVTLTNQTITNQP 233
Score = 99.8 bits (249), Expect = 8e-23
Identities = 50/305 (16%), Positives = 113/305 (37%), Gaps = 40/305 (13%)
Query: 111 LIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHNVFTDELQSLE 170
L + ++ + + + L + TL+ ++ L +L
Sbjct: 18 LANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTG---------VTTIEGVQYLNNLI 66
Query: 171 SLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSN 230
L+L N I L L ++ L L+ N L NV + + +++ LDL++
Sbjct: 67 GLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGL------QSIKTLDLTS 116
Query: 231 NSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFN 290
+ + LS LQ LYL N +T ++ L GL +L L++ + ++ P
Sbjct: 117 TQITDV--TPLAGLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIGNAQVSDLTP--LA 170
Query: 291 QSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNI 350
L + +N I+ ++P L LI + L NN+++ + + + L ++ +
Sbjct: 171 NLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQIS----DVSPLANTSNLFIVTL 224
Query: 351 AYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNS 410
+ +L V+ + + + ++ L ++
Sbjct: 225 TNQTITNQPVFYNNNLVVPNVVKGPSGAPIAP-------ATISDNGTYASPNLTWNLTSF 277
Query: 411 LDSLT 415
+++++
Sbjct: 278 INNVS 282
Score = 63.2 bits (154), Expect = 1e-10
Identities = 32/127 (25%), Positives = 56/127 (44%), Gaps = 8/127 (6%)
Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
L L +I V + G LQ+L+L+ + + I GL L L + + ++++
Sbjct: 110 KTLDLTSTQITDVTPLA--GLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD 165
Query: 866 IRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSSQIQS 925
+ L L L NKI IS SL +L + L +N+I+ + +S +
Sbjct: 166 LTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSPLANTSNLFI 221
Query: 926 ITLTSNP 932
+TLT+
Sbjct: 222 VTLTNQT 228
Score = 62.4 bits (152), Expect = 2e-10
Identities = 31/126 (24%), Positives = 61/126 (48%), Gaps = 8/126 (6%)
Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
LYLD N+I + G LQ L + ++ V + L +L L+ DDN++++
Sbjct: 132 QVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISD 187
Query: 866 IRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSSQIQS 925
I L NL E++L+ N+I +S + ++L ++ L + IT+ V++ ++ +
Sbjct: 188 ISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPVFYNNNLVVP 243
Query: 926 ITLTSN 931
+
Sbjct: 244 NVVKGP 249
Score = 60.9 bits (148), Expect = 7e-10
Identities = 28/126 (22%), Positives = 55/126 (43%), Gaps = 8/126 (6%)
Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
L L N+I + K+ L L+ + ++ + GL+ + L L ++T+
Sbjct: 66 IGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQITD 121
Query: 866 IRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSSQIQS 925
+ L NL+ LYL N+I IS LT+L+ L + + +++ S++ +
Sbjct: 122 VTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTPLANLSKLTT 177
Query: 926 ITLTSN 931
+ N
Sbjct: 178 LKADDN 183
Score = 58.5 bits (142), Expect = 4e-09
Identities = 36/159 (22%), Positives = 65/159 (40%), Gaps = 13/159 (8%)
Query: 531 DNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQ 590
+N + I + +TD L + L+ + + +L L++ NQ
Sbjct: 16 PALANAIKIAAGKSNVTDTVTQ-ADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQ 74
Query: 591 ISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKP 650
I++L +++ ++T + S N L ++ A S++ L LT+ I+ V P
Sbjct: 75 ITDLAP---LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTP--LAGLS 129
Query: 651 NLTRVDLVGNRLKNINQTALRISPLPSHKNIPDFYIGEN 689
NL + L N++ N ISPL N+ IG
Sbjct: 130 NLQVLYLDLNQITN-------ISPLAGLTNLQYLSIGNA 161
Score = 53.9 bits (130), Expect = 1e-07
Identities = 24/105 (22%), Positives = 42/105 (40%), Gaps = 6/105 (5%)
Query: 827 KKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNK 886
+ S+V T L + L +T I G + L NL L L+ N+
Sbjct: 19 ANAIKIAAGKSNVTDT--VTQADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKDNQ 74
Query: 887 IIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSSQIQSITLTSN 931
I ++ +LT + L+L N + + + I+++ LTS
Sbjct: 75 ITDLAP--LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTST 117
Score = 51.6 bits (124), Expect = 7e-07
Identities = 38/193 (19%), Positives = 75/193 (38%), Gaps = 29/193 (15%)
Query: 107 SFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHN--TDWSTMS-------LDI 157
+ L +K L + +I +++ GL L+ L L N T+ S ++ L I
Sbjct: 102 AIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLD-LNQITNISPLAGLTNLQYLSI 158
Query: 158 SHNVFTD-----ELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFS 212
+ +D L L +L N I + L +L ++L N++S+V+ + +
Sbjct: 159 GNAQVSDLTPLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSPLANT 216
Query: 213 NYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLT 272
+ NL ++ L+N + + P + L ++G +A + +
Sbjct: 217 S--------NLFIVTLTNQTITNQPVFYNNNLVVP--NVVKGPSGAPIAPATISDNGTYA 266
Query: 273 VLNLSVNNLVNIP 285
NL+ N I
Sbjct: 267 SPNLTWNLTSFIN 279
Score = 46.2 bits (110), Expect = 4e-05
Identities = 16/108 (14%), Positives = 35/108 (32%), Gaps = 6/108 (5%)
Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
L + ++ + KL L + + + I L LI + L +N++++
Sbjct: 154 QYLSIGNAQVSDL--TPLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISD 209
Query: 866 IRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITS 913
+ NL + L I +L V++ +
Sbjct: 210 VSP--LANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIA 255
Score = 45.8 bits (109), Expect = 4e-05
Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 4/65 (6%)
Query: 849 GLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDH 908
L I + + +T+ L+ + L + I L +L L+L
Sbjct: 17 ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKD 72
Query: 909 NRITS 913
N+IT
Sbjct: 73 NQITD 77
Score = 32.0 bits (73), Expect = 1.2
Identities = 8/60 (13%), Positives = 18/60 (30%), Gaps = 2/60 (3%)
Query: 872 ERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSSQIQSITLTSN 931
L N ++ + + T L + L +T+ + + + L N
Sbjct: 16 PALANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDN 73
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein
binding, plasma; 1.70A {Listeria monocytogenes} PDB:
3rfj_A
Length = 272
Score = 125 bits (315), Expect = 8e-32
Identities = 51/209 (24%), Positives = 87/209 (41%), Gaps = 8/209 (3%)
Query: 217 ARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNL 276
+L S + L+ + ++ + + + + L ++ L L
Sbjct: 15 DDAFAETIKANLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQ--GIQYLPNVRYLAL 70
Query: 277 SVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNA 336
N L +I + +L + L N + L G+F+ LT L L L N+L +
Sbjct: 71 GGNKLHDIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQS--LPD 126
Query: 337 ATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTL 396
F L L LN+A+N++ L +F L L L L NQ++S+ F L+ L L
Sbjct: 127 GVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDL 186
Query: 397 IMSNNKLKRIESNSLDSLTALSVLSLDNN 425
+ N+LK + D LT+L + L +N
Sbjct: 187 RLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215
Score = 116 bits (293), Expect = 6e-29
Identities = 53/204 (25%), Positives = 90/204 (44%), Gaps = 9/204 (4%)
Query: 270 SLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNEL 329
NL ++ + N+ + ++ N+ I + L + L L N+L
Sbjct: 20 ETIKANLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQG--IQYLPNVRYLALGGNKL 75
Query: 330 TEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFAS 389
+ L L L + N++ L + +F L L+ L L NQ++S+ F
Sbjct: 76 HDISA----LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDK 131
Query: 390 LSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGN 449
L+NL L +++N+L+ + D LT L+ L L N+L+ + E T L+D L N
Sbjct: 132 LTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQN 191
Query: 450 KLTEIPK-VLRNLHSLKTLDLGDN 472
+L +P V L SL+ + L DN
Sbjct: 192 QLKSVPDGVFDRLTSLQYIWLHDN 215
Score = 103 bits (259), Expect = 2e-24
Identities = 57/184 (30%), Positives = 90/184 (48%), Gaps = 15/184 (8%)
Query: 151 STMSLDISHNVFT-----DELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSN 205
T+ ++ T +EL S++ + + + I ++ L ++ YL L NKL +
Sbjct: 20 ETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVRYLALGGNKLHD 77
Query: 206 VATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHAL 265
++ NL L L+ N SLP F +L+ L+EL L N L L D
Sbjct: 78 ISAL-----KEL---TNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVF 129
Query: 266 DGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLS 325
D L +LT LNL+ N L ++P +F++ +L E+ L N + L G+F+ LTQL L L
Sbjct: 130 DKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLY 189
Query: 326 NNEL 329
N+L
Sbjct: 190 QNQL 193
Score = 96.6 bits (241), Expect = 5e-22
Identities = 60/198 (30%), Positives = 103/198 (52%), Gaps = 10/198 (5%)
Query: 370 QVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEY 429
+L+ + T L+++ +I +N+ +K ++ + L + L+L N+L
Sbjct: 22 IKANLKKKSVTDA--VTQNELNSIDQIIANNSDIKSVQG--IQYLPNVRYLALGGNKLHD 77
Query: 430 IEENALKNSTSLQDFHLNGNKLTEIP-KVLRNLHSLKTLDLGDNLITEINNLSLNSLHQL 488
I ALK T+L L GN+L +P V L +LK L L +N + + + + L L
Sbjct: 78 IS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNL 135
Query: 489 AGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTD 548
L L N + ++ KGVF+KL+ LT L+L+ N++Q + G FD + L +RL N L
Sbjct: 136 TYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKS 195
Query: 549 I-GGLFPKLPNL--VWLN 563
+ G+F +L +L +WL+
Sbjct: 196 VPDGVFDRLTSLQYIWLH 213
Score = 93.9 bits (234), Expect = 3e-21
Identities = 50/176 (28%), Positives = 89/176 (50%), Gaps = 6/176 (3%)
Query: 395 TLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEI 454
+ + + + L ++ + +N++++ ++ ++ +++ L GNKL +I
Sbjct: 23 KANLKKKSVTDAVTQ--NELNSIDQIIANNSDIKSVQ--GIQYLPNVRYLALGGNKLHDI 78
Query: 455 PKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTI 514
L+ L +L L L N + + N + L L L L EN + ++ GVF+KL+ LT
Sbjct: 79 S-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTY 137
Query: 515 LNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDI-GGLFPKLPNLVWLNISENLL 569
LNLA N++Q + G FD +NL + L N L + G+F KL L L + +N L
Sbjct: 138 LNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL 193
Score = 92.4 bits (230), Expect = 1e-20
Identities = 49/190 (25%), Positives = 80/190 (42%), Gaps = 21/190 (11%)
Query: 128 SAGSFRGLRKLKTLTLRTH--------NTDWSTMSLDISHN------VFTDELQSLESLD 173
A + L + + + L + N EL +L L
Sbjct: 33 DAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISAL-KELTNLTYLI 91
Query: 174 LSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSF 233
L+ N + +LP+ +F L +L L L +N+L ++ F NL L+L++N
Sbjct: 92 LTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKL------TNLTYLNLAHNQL 145
Query: 234 DSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSR 293
SLP F +L+ L EL L N L L + D L L L L N L ++P +F++
Sbjct: 146 QSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLT 205
Query: 294 DLKEVYLQNN 303
L+ ++L +N
Sbjct: 206 SLQYIWLHDN 215
Score = 87.8 bits (218), Expect = 4e-19
Identities = 66/293 (22%), Positives = 110/293 (37%), Gaps = 66/293 (22%)
Query: 438 STSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENN 497
+L +T+ L+S+ + ++ I + + L + L L N
Sbjct: 18 FAETIKANLKKKSVTDAV-TQNELNSIDQIIANNSDIKSVQ--GIQYLPNVRYLALGGNK 74
Query: 498 ISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLP 557
+ +I ++L+ LT L L N++Q + G FD +NL + L N L LP
Sbjct: 75 LHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ-------SLP 125
Query: 558 NLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGN-YFEIESQLRLTYFDASSNKL 616
+ V FD +L +L++ NQ+ L F + LT D S N+L
Sbjct: 126 DGV-----------FDK---LTNLTYLNLAHNQLQSLPKGVF--DKLTNLTELDLSYNQL 169
Query: 617 TELTGNAIPHSVENLF--LTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISP 674
++P V F LT L + L N+LK++
Sbjct: 170 Q-----SLPEGV---FDKLT----------------QLKDLRLYQNQLKSVPDGVF--DR 203
Query: 675 LPSHKNIPDFYIGENPFQCDCN-----MQWLQSYSVNKERNKPNLVDLDTVTC 722
L S + I ++ +NP+ C C +W+ +S RN V D+ C
Sbjct: 204 LTSLQYI---WLHDNPWDCTCPGIRYLSEWINKHS-GVVRNSAGSVAPDSAKC 252
Score = 76.6 bits (189), Expect = 3e-15
Identities = 40/164 (24%), Positives = 66/164 (40%), Gaps = 30/164 (18%)
Query: 801 IPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDD 860
+ L L GN++ + + L L L + ++++ N F+ L L L L +
Sbjct: 61 YLPNVRYLALGGNKLHDISA--LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE 118
Query: 861 NRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSF------ 914
N+L + F++L NL L L +N++ + F LT+L L L +N++ S
Sbjct: 119 NQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFD 178
Query: 915 ---------------------AVWHLSSQIQSITLTSNPWSCDC 937
L+S +Q I L NPW C C
Sbjct: 179 KLTQLKDLRLYQNQLKSVPDGVFDRLTS-LQYIWLHDNPWDCTC 221
Score = 62.3 bits (152), Expect = 1e-10
Identities = 32/148 (21%), Positives = 55/148 (37%), Gaps = 23/148 (15%)
Query: 786 IDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETI--- 842
I ST P + + L + + + + N+S ++++
Sbjct: 3 ITVSTPIKQI-FPDDAFAETIKANLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQGI 59
Query: 843 ------------HNK-----TFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYN 885
NK L L L L N+L + F++L NL+EL L N
Sbjct: 60 QYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN 119
Query: 886 KIIYISNRTFLSLTHLKVLQLDHNRITS 913
++ + + F LT+L L L HN++ S
Sbjct: 120 QLQSLPDGVFDKLTNLTYLNLAHNQLQS 147
Score = 43.9 bits (104), Expect = 2e-04
Identities = 33/100 (33%), Positives = 47/100 (47%), Gaps = 7/100 (7%)
Query: 102 SLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHNV 161
SL G F L +L L++ ++ +L G F L L L L N S + V
Sbjct: 123 SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSY-NQLQS-----LPEGV 176
Query: 162 FTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQN 201
F D+L L+ L L N + ++PD +F L SL Y+ L N
Sbjct: 177 F-DKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215
Score = 37.3 bits (87), Expect = 0.024
Identities = 16/89 (17%), Positives = 37/89 (41%), Gaps = 5/89 (5%)
Query: 577 IPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPHSVENLFLTNN 636
A+ ++ +++ E+ S + A+++ + + G +V L L N
Sbjct: 17 AFAETIKANLKKKSVTDAVTQNELNS---IDQIIANNSDIKSVQGIQYLPNVRYLALGGN 73
Query: 637 LISKVQPYTFFMKPNLTRVDLVGNRLKNI 665
+ + NLT + L GN+L+++
Sbjct: 74 KLHDIS--ALKELTNLTYLILTGNQLQSL 100
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor
complex, structural genomics, protein structure
initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens}
SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Length = 461
Score = 126 bits (319), Expect = 9e-31
Identities = 92/477 (19%), Positives = 150/477 (31%), Gaps = 89/477 (18%)
Query: 154 SLDISHNVFTDE--------LQSLESLDLSMNSI----WTLPDAIFCPLQSLSYLNLTQN 201
SLDI +D LQ + + L + + +L+ LNL N
Sbjct: 7 SLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSN 66
Query: 202 KLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLP----AEGFSRLSRLQELYLQGNIL 257
+L +V ++ L L N + L LQEL+L N+L
Sbjct: 67 ELGDVGVHCVLQG-LQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLL 125
Query: 258 T-----FLADHALDGLNSLTVLNLSVNNLVNIPP----ELFNQSRDLKEVYLQNNSIN-- 306
L + LD L L L +L + D KE+ + NN IN
Sbjct: 126 GDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEA 185
Query: 307 ---VLAPGIFNVLTQLIVLDLSNNELTEEWVN--AATFSGLHRLVVLNIAYNK-----MN 356
VL G+ + QL L L + +T + + L L + NK M
Sbjct: 186 GVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMA 245
Query: 357 KLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTA 416
+L + RL+ L + I T +L L + +
Sbjct: 246 ELCPGLLHPSSRLRTLWIWECGI------TAKGCGDL--------------CRVLRAKES 285
Query: 417 LSVLSLDNNELE-----YIEENALKNSTSLQDFHLNGNKLTE-----IPKVLRNLHSLKT 466
L LSL NEL + E L+ L+ + T VL L
Sbjct: 286 LKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLE 345
Query: 467 LDLGDNLITE--INNLS---LNSLHQLAGLRLTENNISN-----ISKGVFEKLSVLTILN 516
L + +N + + + L L L L + ++S+ ++ L L+
Sbjct: 346 LQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAA-TLLANHSLRELD 404
Query: 517 LASNKIQKVEAGTF-----DNNSNLVAIRLDGNYLTDIG-----GLFPKLPNLVWLN 563
L++N + L + L Y ++ L P+L ++
Sbjct: 405 LSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVIS 461
Score = 116 bits (294), Expect = 1e-27
Identities = 84/435 (19%), Positives = 150/435 (34%), Gaps = 85/435 (19%)
Query: 222 NLRVLDLSNNSFDSLPAEGFSRL----SRLQELYLQGNILTF-----LADHALDGLNSLT 272
+++ LD+ ++ L + Q + L LT ++ AL +L
Sbjct: 4 DIQSLDIQCEELS---DARWAELLPLLQQCQVVRLDDCGLTEARCKDISS-ALRVNPALA 59
Query: 273 VLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEE 332
LNL N L + ++ + G+ ++ L L N LT
Sbjct: 60 ELNLRSNEL-------------------GDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGA 100
Query: 333 WVN--AATFSGLHRLVVLNIAYNK-----MNKLDSSIFKDLYRLQVLHLENNQIESIHRN 385
++T L L L+++ N + L + RL+ L LE + +
Sbjct: 101 GCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE 160
Query: 386 TFASL----SNLHTLIMSNNKLKRIESNSL-----DSLTALSVLSLDNNEL-----EYIE 431
AS+ + L +SNN + L DS L L L++ + +
Sbjct: 161 PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLC 220
Query: 432 ENALKNSTSLQDFHLNGNKLTE------IPKVLRNLHSLKTLDLGDNLITE--INNLS-- 481
+ + SL++ L NKL + P +L L+TL + + IT +L
Sbjct: 221 G-IVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRV 279
Query: 482 LNSLHQLAGLRLTENNISN-----ISKGVFEKLSVLTILNLASNKIQKVEAGTF----DN 532
L + L L L N + + + + + E L L + S F
Sbjct: 280 LRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQ 339
Query: 533 NSNLVAIRLDGNYLTDIG------GLFPKLPNLVWLNISENLLEWFDY-ALIPA-----D 580
N L+ +++ N L D G GL L L +++ + +L
Sbjct: 340 NRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHS 399
Query: 581 LQWLDIHGNQISELG 595
L+ LD+ N + + G
Sbjct: 400 LRELDLSNNCLGDAG 414
Score = 97.7 bits (244), Expect = 3e-21
Identities = 76/415 (18%), Positives = 137/415 (33%), Gaps = 72/415 (17%)
Query: 292 SRDLKEVYLQNNSINVLA-PGIFNVLTQLIVLDLSNNELTEEWVN--AATFSGLHRLVVL 348
S D++ + +Q ++ + +L Q V+ L + LTE ++ L L
Sbjct: 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 61
Query: 349 NIAYNK-----MNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASL----SNLHTLIMS 399
N+ N+ ++ + + ++Q L L+N + +S L L +S
Sbjct: 62 NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 121
Query: 400 NNKL-----KRIESNSLDSLTALSVLSLDNNEL-----EYIEENALKNSTSLQDFHLNGN 449
+N L + + LD L L L+ L E + L+ ++ ++ N
Sbjct: 122 DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLAS-VLRAKPDFKELTVSNN 180
Query: 450 KLTE-----IPKVLRNLH-SLKTLDLGDNLITE--INNLS--LNSLHQLAGLRLTENNIS 499
+ E + + L++ L+ L L +T +L + S L L L N +
Sbjct: 181 DINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG 240
Query: 500 N-----ISKGVFEKLSVLTILNLASNKIQKVEAGTF----DNNSNLVAIRLDGNYLTDIG 550
+ + G+ S L L + I G +L + L GN L D G
Sbjct: 241 DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEG 300
Query: 551 ------GLFPKLPNLVWLNISENLL-EWFDYALIPA-----DLQWLDIHGNQIS-----E 593
L L L + L L I N++ E
Sbjct: 301 ARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRE 360
Query: 594 LGNYFEIESQLRLTYFDASSNKLTE---------LTGNAIPHSVENLFLTNNLIS 639
L + L + +++ L N HS+ L L+NN +
Sbjct: 361 LCQGLG-QPGSVLRVLWLADCDVSDSSCSSLAATLLAN---HSLRELDLSNNCLG 411
Score = 93.5 bits (233), Expect = 6e-20
Identities = 69/406 (16%), Positives = 128/406 (31%), Gaps = 84/406 (20%)
Query: 114 LKDLSVEFCKIGNLSAGSF-RGLRKLKTLTLRTHNTDWSTMSLDISHNVFTDE------- 165
++ LS++ C + G LR L TL L +S N+ D
Sbjct: 87 IQKLSLQNCCLTGAGCGVLSSTLRTLPTLQ-----------ELHLSDNLLGDAGLQLLCE 135
Query: 166 -----LQSLESLDLSMNSIWTLPDAIFCPL----QSLSYLNLTQNKLSNVATFSFSNYDT 216
LE L L S+ + L ++ N ++
Sbjct: 136 GLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQ-GL 194
Query: 217 ARCGINLRVLDLSNNSFDSLP----AEGFSRLSRLQELYLQGNILT-----FLADHALDG 267
L L L + S + + L+EL L N L L L
Sbjct: 195 KDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHP 254
Query: 268 LNSLTVLNLSVNNL----VNIPPELFNQSRDLKEVYLQNNSI-----NVLAPGIFNVLTQ 318
+ L L + + + LKE+ L N + +L + Q
Sbjct: 255 SSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQ 314
Query: 319 LIVLDLSNNELTEEWVN--AATFSGLHRLVVLNIAYNKM-----NKLDSSIFKDLYRLQV 371
L L + + T + ++ + L+ L I+ N++ +L + + L+V
Sbjct: 315 LESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRV 374
Query: 372 LHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELE--- 428
L L + + + +S S+L + +L + +L L L NN L
Sbjct: 375 LWLADCDV------SDSSCSSL--------------AATLLANHSLRELDLSNNCLGDAG 414
Query: 429 --YIEENALKNSTSLQDFHLNGNKLTE-----IPKVLRNLHSLKTL 467
+ E+ + L+ L +E + + ++ SL+ +
Sbjct: 415 ILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 460
Score = 61.1 bits (149), Expect = 1e-09
Identities = 52/290 (17%), Positives = 93/290 (32%), Gaps = 51/290 (17%)
Query: 438 STSLQDFHLNGNKLTE--IPKVLRNLHSLKTLDLGDNLITE--INNLS--LNSLHQLAGL 491
S +Q + +L++ ++L L + + L D +TE ++S L LA L
Sbjct: 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 61
Query: 492 RLTENNISN-----ISKGVFEKLSVLTILNLASNKIQ----KVEAGTFDNNSNLVAIRLD 542
L N + + + +G+ + L+L + + V + T L + L
Sbjct: 62 NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 121
Query: 543 GNYLTDIG------GLFPKLPNLVWLNISENLL-----EWFDYALIP-ADLQWLDIHGNQ 590
N L D G GL L L + L E L D + L + N
Sbjct: 122 DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 181
Query: 591 ISE-----LGNYFEIESQLRLTYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYT 645
I+E L + +S +L S +T + + +
Sbjct: 182 INEAGVRVLCQGLK-DSPCQLEALKLESCGVTSDNCRDL-----CGIVASK--------- 226
Query: 646 FFMKPNLTRVDLVGNRLKNINQTALRISPLPSHKNIPDFYIGENPFQCDC 695
+L + L N+L ++ L L + +I E
Sbjct: 227 ----ASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKG 272
Score = 38.0 bits (89), Expect = 0.018
Identities = 23/145 (15%), Positives = 44/145 (30%), Gaps = 21/145 (14%)
Query: 806 TELYLDGNRIPVVG----SHSFIGRKKLQILFLNSSH-----VETIHNKTFNGLKELIIL 856
L L+ + + L+ L L S+ + + + L L
Sbjct: 202 EALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTL 261
Query: 857 RLDDNRLTEIRGYEF-----ERLENLRELYLQYNKI-----IYISNRTFLSLTHLKVLQL 906
+ + +T +G E+L+EL L N++ + L+ L +
Sbjct: 262 WIWECGITA-KGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWV 320
Query: 907 DHNRITSFAVWHLSSQIQS-ITLTS 930
T+ H SS + L
Sbjct: 321 KSCSFTAACCSHFSSVLAQNRFLLE 345
Score = 37.2 bits (87), Expect = 0.033
Identities = 15/90 (16%), Positives = 29/90 (32%), Gaps = 16/90 (17%)
Query: 853 LIILRLDDNRLTEIRGYEF-----ERLENLRELYLQYNKI-----IYISNRTFLSLTHLK 902
L L + T + L EL + N++ + + L+
Sbjct: 315 LESLWVKSCSFTA-ACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLR 373
Query: 903 VLQLDHNRITSFAVWHLSSQIQSITLTSNP 932
VL L ++ + L++ TL +N
Sbjct: 374 VLWLADCDVSDSSCSSLAA-----TLLANH 398
Score = 36.5 bits (85), Expect = 0.054
Identities = 26/135 (19%), Positives = 47/135 (34%), Gaps = 20/135 (14%)
Query: 806 TELYLDGNRIPVVG----SHSFIGRKKLQILFLNSSHVETIHNKTF-NGLKE----LIIL 856
+ LD + S + L L L S+ + + GL+ + L
Sbjct: 31 QVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKL 90
Query: 857 RLDDNRLTEIRGYE-----FERLENLRELYLQYNKI-----IYISNRTFLSLTHLKVLQL 906
L + LT G L L+EL+L N + + L+ LQL
Sbjct: 91 SLQNCCLTG-AGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQL 149
Query: 907 DHNRITSFAVWHLSS 921
++ +++ + L+S
Sbjct: 150 EYCSLSAASCEPLAS 164
Score = 35.7 bits (83), Expect = 0.099
Identities = 21/145 (14%), Positives = 48/145 (33%), Gaps = 21/145 (14%)
Query: 806 TELYLDGNRIPVVG----SHSFIGRKKLQILFLNSSH-----VETIHNKTFNGLKELIIL 856
+L L+ + + + + L ++++ V + + +L L
Sbjct: 145 EKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEAL 204
Query: 857 RLDDNRLTEIRGYE-----FERLENLRELYLQYNKI-----IYISNRTFLSLTHLKVLQL 906
+L+ +T +LREL L NK+ + + L+ L +
Sbjct: 205 KLESCGVTS-DNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWI 263
Query: 907 DHNRITSFAVWHLSSQIQS-ITLTS 930
IT+ L +++ +L
Sbjct: 264 WECGITAKGCGDLCRVLRAKESLKE 288
Score = 35.3 bits (82), Expect = 0.13
Identities = 22/146 (15%), Positives = 43/146 (29%), Gaps = 25/146 (17%)
Query: 806 TELYLDGNRIPVVGSHSFI----GRKKLQILFLNSSHVETIHNKTF-NGLKE----LIIL 856
L++ F + L L ++++ +E + GL + L +L
Sbjct: 316 ESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVL 375
Query: 857 RLDDNRLTEIRGYEF-----ERLENLRELYLQYNKI-----IYISNRTFLSLTHLKVLQL 906
L D +++ +LREL L N + + + L+ L L
Sbjct: 376 WLADCDVSD-SSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVL 434
Query: 907 DHNRITSFAVWHLSSQIQSITLTSNP 932
+ L + P
Sbjct: 435 YDIYWSEEMEDRLQA-----LEKDKP 455
Score = 32.2 bits (74), Expect = 1.3
Identities = 10/52 (19%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 875 ENLRELYLQYNKIIYISNRTFLS-LTHLKVLQLDHNRITSFAVWHLSSQIQS 925
+++ L +Q ++ L L +V++LD +T +SS ++
Sbjct: 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRV 54
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold,
ligase; 2.80A {Shigella flexneri 2A}
Length = 571
Score = 124 bits (313), Expect = 1e-29
Identities = 55/321 (17%), Positives = 96/321 (29%), Gaps = 34/321 (10%)
Query: 171 SLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSN 230
S + N+I F L + + L L+
Sbjct: 14 SQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLIN-----QFSELQLNR 68
Query: 231 NSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFN 290
+ SLP ++ L + N L L + SL L+ N L +P +
Sbjct: 69 LNLSSLPDNLP---PQITVLEITQNALISL----PELPASLEYLDACDNRLSTLPELPAS 121
Query: 291 QSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNI 350
LK + + NN + +L L ++ NN+LT L VL++
Sbjct: 122 ----LKHLDVDNNQLTMLPELP----ALLEYINADNNQLTM------LPELPTSLEVLSV 167
Query: 351 AYNKMNKLDSSIFKDLYRLQVLHLENNQIESI---HRNTFASLSNLHTLIMSNNKLKRIE 407
N++ L L+ L + N +ES+ S N++ I
Sbjct: 168 RNNQLTFLPELPE----SLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHI- 222
Query: 408 SNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTL 467
++ SL + L++N L +L T+ D+H + LH
Sbjct: 223 PENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLAD 282
Query: 468 DLGDNLITEINNLSLNSLHQL 488
+ + H
Sbjct: 283 AVTAWFPENKQSDVSQIWHAF 303
Score = 124 bits (313), Expect = 1e-29
Identities = 52/275 (18%), Positives = 103/275 (37%), Gaps = 35/275 (12%)
Query: 226 LDLSNNSFDSLPAEGFSRLSRLQELYLQG----NILTFLADHALDGLNSLTVLNLSVNNL 281
+ N+ A+ FS + ++ L G ++ L + + N + L L+ NL
Sbjct: 15 QNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLI---NQFSELQLNRLNL 71
Query: 282 VNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSG 341
++P L Q + + + N++ L L LD +N L+
Sbjct: 72 SSLPDNLPPQ---ITVLEITQNALISLPELP----ASLEYLDACDNRLST------LPEL 118
Query: 342 LHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNN 401
L L++ N++ L L+ ++ +NNQ+ + ++L L + NN
Sbjct: 119 PASLKHLDVDNNQLTMLPELPAL----LEYINADNNQLTML----PELPTSLEVLSVRNN 170
Query: 402 KLKRIESNSLDSLTALSVLSLDNNELEYIEE---NALKNSTSLQDFHLNGNKLTEIPKVL 458
+L + + +L L + N LE + + + F N++T IP+ +
Sbjct: 171 QLTFLP----ELPESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENI 226
Query: 459 RNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRL 493
+L T+ L DN ++ SL+
Sbjct: 227 LSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHG 261
Score = 121 bits (304), Expect = 2e-28
Identities = 71/408 (17%), Positives = 127/408 (31%), Gaps = 49/408 (12%)
Query: 151 STMSLDISHNV-------FTDELQSLESLDLSMNSIWTLPDAIF-CPLQSLSYLNLTQNK 202
++S + +N + E L + + C + S L L +
Sbjct: 11 FSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLN 70
Query: 203 LSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLAD 262
LS++ + VL+++ N+ SLP + L+ L N L+ L +
Sbjct: 71 LSSLPDNLPPQ---------ITVLEITQNALISLPEL----PASLEYLDACDNRLSTLPE 117
Query: 263 HALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVL 322
SL L++ N L +P L+ + NN + +L + T L VL
Sbjct: 118 L----PASLKHLDVDNNQLTMLPELPAL----LEYINADNNQLTMLPE----LPTSLEVL 165
Query: 323 DLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKD---LYRLQVLHLENNQI 379
+ NN+LT L L+++ N + L + ++ N+I
Sbjct: 166 SVRNNQLTF------LPELPESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRI 219
Query: 380 ESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNST 439
I SL T+I+ +N L SL TA +
Sbjct: 220 THI-PENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHR 278
Query: 440 SLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNIS 499
L D + V + H+ + + + ++ LS ++
Sbjct: 279 PLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLDRLSD--TVSARNTSGFREQVA 336
Query: 500 NISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLT 547
EKLS L S + + ++ L L L
Sbjct: 337 A----WLEKLSASAELRQQSFAVAADATESCEDRVALTWNNLRKTLLV 380
Score = 107 bits (269), Expect = 4e-24
Identities = 55/362 (15%), Positives = 115/362 (31%), Gaps = 77/362 (21%)
Query: 274 LNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNV-LTQLIVLDLSNNELTEE 332
N N + + F+ ++ L + N + + Q L L+ L+
Sbjct: 15 QNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLSS- 73
Query: 333 WVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSN 392
L ++ ++ VL + N + S+ ++
Sbjct: 74 -------------------------LPDNLPP---QITVLEITQNALISLP----ELPAS 101
Query: 393 LHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLT 452
L L +N+L + + +L L +DNN+L + E L+ + + N+LT
Sbjct: 102 LEYLDACDNRLSTL----PELPASLKHLDVDNNQLTMLPEL----PALLEYINADNNQLT 153
Query: 453 EIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVL 512
+P++ +L + L + +N +T + E L
Sbjct: 154 MLPELPTSL---EVLSVRNNQLTFL----------------------------PELPESL 182
Query: 513 TILNLASNKIQKVEAGTFDNNS---NLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLL 569
L++++N ++ + A N+ + R N +T I L + + +N L
Sbjct: 183 EALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPL 242
Query: 570 EWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPHSVE 629
+ D HG +I ++ L DA + E + +
Sbjct: 243 SSRIRESLSQQTAQPDYHGPRIY-FSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWH 301
Query: 630 NL 631
Sbjct: 302 AF 303
Score = 106 bits (266), Expect = 1e-23
Identities = 45/307 (14%), Positives = 97/307 (31%), Gaps = 35/307 (11%)
Query: 374 LENNQIESIHRNTFASLSNLHTLIMS----NNKLKRIESNSLDSLTALSVLSLDNNELEY 429
N I + + F++ + N + ++ ++ + L L+ L
Sbjct: 17 SFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFS---ELQLNRLNLSS 73
Query: 430 IEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLA 489
+ +N + + N L +P++ +L + LD DN ++ + L
Sbjct: 74 LPDNLPPQ---ITVLEITQNALISLPELPASL---EYLDACDNRLSTL----PELPASLK 123
Query: 490 GLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDI 549
L + N ++ + E ++L +N +N++ + ++L + + N LT
Sbjct: 124 HLDVDNNQLTMLP----ELPALLEYINADNNQLTMLPELP----TSLEVLSVRNNQLTF- 174
Query: 550 GGLFPKLPNLVWLNISENLLEWFDYAL-----IPADLQWLDIHGNQISELGNYFEIESQL 604
L +L L++S NLLE + N+I+ + I S
Sbjct: 175 --LPELPESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPE--NILSLD 230
Query: 605 RLTYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKN 664
N L+ ++ I + D V
Sbjct: 231 PTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPE 290
Query: 665 INQTALR 671
Q+ +
Sbjct: 291 NKQSDVS 297
Score = 73.5 bits (180), Expect = 2e-13
Identities = 43/295 (14%), Positives = 88/295 (29%), Gaps = 31/295 (10%)
Query: 154 SLDISHNVFT---DELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFS 210
++ +N T + SLE L + N + LP+ +SL L+++ N L +
Sbjct: 144 YINADNNQLTMLPELPTSLEVLSVRNNQLTFLPEL----PESLEALDVSTNLLE---SLP 196
Query: 211 FSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNS 270
N +P E L + L+ N L+ +L +
Sbjct: 197 AVPVRNHHSEETEIFFRCRENRITHIP-ENILSLDPTCTIILEDNPLSSRIRESLSQQTA 255
Query: 271 LTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELT 330
+ + R L + + ++Q+
Sbjct: 256 QPDYHGPRIYFSMSDGQQNTLHRPLADAVTAW-----FPENKQSDVSQIW-------HAF 303
Query: 331 EEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLY--------RLQVLHLENNQIESI 382
E +A TFS + ++ + + L R Q + + ES
Sbjct: 304 EHEEHANTFSAFLDRLSDTVSARNTSGFREQVAAWLEKLSASAELRQQSFAVAADATESC 363
Query: 383 HRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKN 437
+ +NL ++ + + + N +L +L LE I + ++
Sbjct: 364 EDRVALTWNNLRKTLLVHQASEGLFDNDTGALLSLGREMFRLEILEDIARDKVRT 418
Score = 49.2 bits (117), Expect = 7e-06
Identities = 24/119 (20%), Positives = 45/119 (37%), Gaps = 16/119 (13%)
Query: 796 QLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELII 855
LP +P T L + N + + L+ L + + T+ L
Sbjct: 73 SLPDNLPPQITVLEITQNALISL--PELPA--SLEYLDACDNRLSTLPEL----PASLKH 124
Query: 856 LRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSF 914
L +D+N+LT + E L + N++ + T L+VL + +N++T
Sbjct: 125 LDVDNNQLTMLP----ELPALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTFL 175
Score = 41.5 bits (97), Expect = 0.002
Identities = 20/120 (16%), Positives = 46/120 (38%), Gaps = 11/120 (9%)
Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETI---HNKTFNGLKELIILRLDDNR 862
L + N++ + + L+ L ++++ +E++ + + + I R +NR
Sbjct: 163 EVLSVRNNQLTFLPELP----ESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENR 218
Query: 863 LTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSSQ 922
+T I L+ + L+ N +S+R SL+ H F++
Sbjct: 219 ITHIP-ENILSLDPTCTIILEDNP---LSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQN 274
Score = 30.3 bits (68), Expect = 4.9
Identities = 12/74 (16%), Positives = 27/74 (36%), Gaps = 6/74 (8%)
Query: 861 NRLTEIRG---YEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVW 917
N ++ +++ E N+ + + + LQL+ ++S
Sbjct: 20 NTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLI--NQFSELQLNRLNLSSLPD- 76
Query: 918 HLSSQIQSITLTSN 931
+L QI + +T N
Sbjct: 77 NLPPQITVLEITQN 90
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell
invasion; 2.05A {Listeria monocytogenes}
Length = 263
Score = 116 bits (292), Expect = 6e-29
Identities = 39/194 (20%), Positives = 87/194 (44%), Gaps = 15/194 (7%)
Query: 374 LENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEEN 433
I + L+N + + + S L+ + + DN+ ++ +
Sbjct: 4 QRPTPINQV--FPDPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQSLA-- 57
Query: 434 ALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRL 493
++ T+L++ HL+ N+++++ L++L L+ L + N + +N + L + L L
Sbjct: 58 GMQFFTNLKELHLSHNQISDL-SPLKDLTKLEELSVNRNRLKNLNGIPSACLSR---LFL 113
Query: 494 TENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLF 553
N + + L L IL++ +NK++ + S L + L GN +T+ GGL
Sbjct: 114 DNNELRDTD--SLIHLKNLEILSIRNNKLKSIVM--LGFLSKLEVLDLHGNEITNTGGLT 169
Query: 554 PKLPNLVWLNISEN 567
+L + W++++
Sbjct: 170 -RLKKVNWIDLTGQ 182
Score = 107 bits (270), Expect = 5e-26
Identities = 52/240 (21%), Positives = 88/240 (36%), Gaps = 20/240 (8%)
Query: 265 LDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDL 324
GL + NL ++ ++ + ++ N++I LA T L L L
Sbjct: 15 DPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQSLAG--MQFFTNLKELHL 70
Query: 325 SNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHR 384
S+N+++ + + L +L L++ N++ L+ L L L+NN++
Sbjct: 71 SHNQIS----DLSPLKDLTKLEELSVNRNRLKNLNGI---PSACLSRLFLDNNELRDT-- 121
Query: 385 NTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDF 444
++ L NL L + NNKLK I L L+ L VL L NE+ L +
Sbjct: 122 DSLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEITNTGG--LTRLKKVNWI 177
Query: 445 HLNGNKLTEIP-KVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISK 503
L G K P K L+ T+ D +S + +
Sbjct: 178 DLTGQKCVNEPVKYQPELYITNTVKDPDGRWISPYYISNG--GSYVDGCVLWELPVYTDE 235
Score = 94.3 bits (235), Expect = 2e-21
Identities = 44/243 (18%), Positives = 91/243 (37%), Gaps = 25/243 (10%)
Query: 190 LQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQE 249
L + NL + ++++ S ++ + N++ SL G + L+E
Sbjct: 18 LANAVKQNLGKQSVTDLV--SQKELS------GVQNFNGDNSNIQSL--AGMQFFTNLKE 67
Query: 250 LYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLA 309
L+L N ++ L+ L L L L+++ N L N+ S L ++L NN +
Sbjct: 68 LHLSHNQISDLS--PLKDLTKLEELSVNRNRLKNLNGI---PSACLSRLFLDNNELRDTD 122
Query: 310 PGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRL 369
L L +L + NN+L + L +L VL++ N++ L ++
Sbjct: 123 S--LIHLKNLEILSIRNNKLK----SIVMLGFLSKLEVLDLHGNEITNTGG--LTRLKKV 174
Query: 370 QVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEY 429
+ L + + L +T+ + + I + + + + Y
Sbjct: 175 NWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRW--ISPYYISNGGSYVDGCVLWELPVY 232
Query: 430 IEE 432
+E
Sbjct: 233 TDE 235
Score = 90.1 bits (224), Expect = 6e-20
Identities = 40/250 (16%), Positives = 84/250 (33%), Gaps = 42/250 (16%)
Query: 446 LNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGV 505
+ ++ L + +LG +T++ + L + +NI +++
Sbjct: 4 QRPTPINQVFP-DPGLANAVKQNLGKQSVTDLVSQK--ELSGVQNFNGDNSNIQSLA--G 58
Query: 506 FEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNIS 565
+ + L L+L+ N+I + + + L + ++ N L ++ G+ L L +
Sbjct: 59 MQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGI--PSACLSRLFLD 114
Query: 566 ENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIP 625
N++ + + + L +NKL +
Sbjct: 115 ----------------------NNELRDTDS---LIHLKNLEILSIRNNKLKSIVMLGFL 149
Query: 626 HSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNI---NQTALRISPL---PSHK 679
+E L L N I+ T + +DL G + N Q L I+ P +
Sbjct: 150 SKLEVLDLHGNEITNTGGLTRL--KKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGR 207
Query: 680 NIPDFYIGEN 689
I +YI
Sbjct: 208 WISPYYISNG 217
Score = 80.8 bits (200), Expect = 9e-17
Identities = 40/241 (16%), Positives = 83/241 (34%), Gaps = 30/241 (12%)
Query: 153 MSLDISHNVFTD-----ELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVA 207
+ ++ TD EL +++ + ++I +L +L L+L+ N++S+++
Sbjct: 22 VKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAG--MQFFTNLKELHLSHNQISDLS 79
Query: 208 TFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDG 267
L L ++ N +L G L L+L N L +L
Sbjct: 80 PLKDL--------TKLEELSVNRNRLKNL--NGIPSAC-LSRLFLDNNELRDT--DSLIH 126
Query: 268 LNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNN 327
L +L +L++ N L +I L+ + L N I L ++ +DL+
Sbjct: 127 LKNLEILSIRNNKLKSIVM--LGFLSKLEVLDLHGNEITNTGG--LTRLKKVNWIDLTGQ 182
Query: 328 ELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIF-KDLYRLQVLHLENNQIESIHRNT 386
+ E V L + N + + S + + + +
Sbjct: 183 KCVNEPVKY-----QPELYITNTVKDPDGRWISPYYISNGGSYVDGCVLWELPVYTDEVS 237
Query: 387 F 387
+
Sbjct: 238 Y 238
Score = 71.2 bits (175), Expect = 2e-13
Identities = 52/251 (20%), Positives = 90/251 (35%), Gaps = 47/251 (18%)
Query: 107 SFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHNVFTD-- 164
S + L +++ + + I +L+ G++ L L +SHN +D
Sbjct: 36 SQKELSGVQNFNGDNSNIQSLA-----GMQFFTNLK-----------ELHLSHNQISDLS 79
Query: 165 ---ELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGI 221
+L LE L ++ N + L P LS L L N+L + +
Sbjct: 80 PLKDLTKLEELSVNRNRLKNLN---GIPSACLSRLFLDNNELRDTDSLIHLK-------- 128
Query: 222 NLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNL 281
NL +L + NN S+ LS+L+ L L GN +T L L + ++L+
Sbjct: 129 NLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEITNTGG--LTRLKKVNWIDLTGQKC 184
Query: 282 VNIPPELF------NQSRDLKEVYLQNNSI---NVLAPG--IFNVLTQLIVLDLSNNELT 330
VN P + N +D ++ I G ++ + + +E
Sbjct: 185 VNEPVKYQPELYITNTVKDPDGRWISPYYISNGGSYVDGCVLWELPVYTDEVSYKFSEYI 244
Query: 331 EEWVNAATFSG 341
A F G
Sbjct: 245 NVGETEAIFDG 255
Score = 64.7 bits (158), Expect = 2e-11
Identities = 34/174 (19%), Positives = 60/174 (34%), Gaps = 16/174 (9%)
Query: 517 LASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYAL 576
I +V +N V L +TD+ +L + N + ++
Sbjct: 4 QRPTPINQVFP--DPGLANAVKQNLGKQSVTDLVSQ-KELSGVQNFNGDNSNIQSLAGMQ 60
Query: 577 IPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPHSVENLFLTNN 636
+L+ L + NQIS+L ++ +L + N+L L G + LFL NN
Sbjct: 61 FFTNLKELHLSHNQISDLSP---LKDLTKLEELSVNRNRLKNLNGIPSA-CLSRLFLDNN 116
Query: 637 LISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHKNIPDFYIGENP 690
+ NL + + N+LK+ I L + + N
Sbjct: 117 ELRDTDS--LIHLKNLEILSIRNNKLKS-------IVMLGFLSKLEVLDLHGNE 161
Score = 58.5 bits (142), Expect = 3e-09
Identities = 33/127 (25%), Positives = 54/127 (42%), Gaps = 9/127 (7%)
Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
EL+L N+I + KL+ L +N + ++ ++ L L LD+N L +
Sbjct: 66 KELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGIPSACLSRLF---LDNNELRD 120
Query: 866 IRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSSQIQS 925
L+NL L ++ NK+ I L+ L+VL L N IT+ ++
Sbjct: 121 TDS--LIHLKNLEILSIRNNKLKSIVM--LGFLSKLEVLDLHGNEITNTGGLTRLKKVNW 176
Query: 926 ITLTSNP 932
I LT
Sbjct: 177 IDLTGQK 183
Score = 58.1 bits (141), Expect = 4e-09
Identities = 19/126 (15%), Positives = 51/126 (40%), Gaps = 9/126 (7%)
Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
+ L + + S + +Q ++S+++++ L L L N++++
Sbjct: 22 VKQNLGKQSVTDLVSQKEL--SGVQNFNGDNSNIQSLAG--MQFFTNLKELHLSHNQISD 77
Query: 866 IRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSSQIQS 925
+ + L L EL + N++ ++ + L L LD+N + ++
Sbjct: 78 LSP--LKDLTKLEELSVNRNRLKNLNG---IPSACLSRLFLDNNELRDTDSLIHLKNLEI 132
Query: 926 ITLTSN 931
+++ +N
Sbjct: 133 LSIRNN 138
Score = 48.5 bits (116), Expect = 5e-06
Identities = 14/65 (21%), Positives = 27/65 (41%), Gaps = 4/65 (6%)
Query: 849 GLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDH 908
GL + L +T++ + L ++ + I ++ T+LK L L H
Sbjct: 17 GLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQSLAG--MQFFTNLKELHLSH 72
Query: 909 NRITS 913
N+I+
Sbjct: 73 NQISD 77
Score = 48.1 bits (115), Expect = 8e-06
Identities = 26/108 (24%), Positives = 45/108 (41%), Gaps = 7/108 (6%)
Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
+ L+LD N + S I K L+IL + ++ +++I L +L +L L N +T
Sbjct: 109 SRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSIVM--LGFLSKLEVLDLHGNEITN 164
Query: 866 IRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHL-KVLQLDHNRIT 912
G RL+ + + L K + + L V D I+
Sbjct: 165 TGG--LTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWIS 210
Score = 36.5 bits (85), Expect = 0.037
Identities = 10/74 (13%), Positives = 27/74 (36%), Gaps = 4/74 (5%)
Query: 858 LDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVW 917
+ ++ L N + L + + + L+ ++ D++ I S A
Sbjct: 4 QRPTPINQVFP--DPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQSLAGM 59
Query: 918 HLSSQIQSITLTSN 931
+ ++ + L+ N
Sbjct: 60 QFFTNLKELHLSHN 73
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity,
antibody, T cell, leucine-rich repeat, immune system;
1.70A {Petromyzon marinus} PDB: 3m18_A
Length = 251
Score = 110 bits (276), Expect = 6e-27
Identities = 49/178 (27%), Positives = 74/178 (41%), Gaps = 26/178 (14%)
Query: 224 RVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVN 283
LDL + +L F L++L L L N L L+ D L L L L+ N L +
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS 97
Query: 284 IPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLH 343
+P +F+ L ++YL N + L G+F+ LT+L L L+ N+L
Sbjct: 98 LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQS------------ 145
Query: 344 RLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNN 401
+ + F L LQ L L NQ++S+ F L L T+ + N
Sbjct: 146 --------------IPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189
Score = 108 bits (272), Expect = 2e-26
Identities = 53/176 (30%), Positives = 79/176 (44%), Gaps = 25/176 (14%)
Query: 370 QVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEY 429
+ L L++ + ++ TF L+ L L + N+L+ + + D LT L L L NN+L
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS 97
Query: 430 IEENALKNSTSLQDFHLNGNKLTEIP-KVLRNLHSLKTLDLGDNLITEINNLSLNSLHQL 488
+ + T L +L GN+L +P V L LK L L N QL
Sbjct: 98 LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN--------------QL 143
Query: 489 AGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGN 544
+I G F+KL+ L L+L++N++Q V G FD L I L GN
Sbjct: 144 ----------QSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189
Score = 108 bits (272), Expect = 2e-26
Identities = 55/152 (36%), Positives = 79/152 (51%), Gaps = 3/152 (1%)
Query: 322 LDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIES 381
LDL + L ++ ATF GL +L LN+ YN++ L + +F DL L L L NNQ+ S
Sbjct: 40 LDLQSTGLAT--LSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS 97
Query: 382 IHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSL 441
+ F L+ L L + N+LK + S D LT L L L+ N+L+ I A T+L
Sbjct: 98 LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNL 157
Query: 442 QDFHLNGNKLTEIPK-VLRNLHSLKTLDLGDN 472
Q L+ N+L +P L L+T+ L N
Sbjct: 158 QTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189
Score = 105 bits (263), Expect = 4e-25
Identities = 53/199 (26%), Positives = 83/199 (41%), Gaps = 35/199 (17%)
Query: 768 TCP--NNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIG 825
TC CTC + +DC D+ +P IP D +L L + + +F G
Sbjct: 3 TCETVTGCTC----NEGKKEVDCQGKSLDS-VPSGIPADTEKLDLQSTGLATLSDATFRG 57
Query: 826 RKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYN 885
KL L L+ + ++T+ F+ L EL L L +N+L + F+ L L +LYL N
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN 117
Query: 886 KIIYISNRTFLSLTHLKVLQLDHNRITSF---------------------------AVWH 918
++ + + F LT LK L+L+ N++ S A
Sbjct: 118 QLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDR 177
Query: 919 LSSQIQSITLTSNPWSCDC 937
L +Q+ITL N + C
Sbjct: 178 LGK-LQTITLFGNQFDCSR 195
Score = 94.8 bits (236), Expect = 1e-21
Identities = 50/161 (31%), Positives = 66/161 (40%), Gaps = 30/161 (18%)
Query: 170 ESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLS 229
E LDL + TL DA F L L++LNL N+L
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ------------------------- 72
Query: 230 NNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELF 289
+L A F L+ L L L N L L D L L L L N L ++P +F
Sbjct: 73 -----TLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVF 127
Query: 290 NQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELT 330
++ LKE+ L N + + G F+ LT L L LS N+L
Sbjct: 128 DRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ 168
Score = 90.1 bits (224), Expect = 4e-20
Identities = 57/191 (29%), Positives = 83/191 (43%), Gaps = 37/191 (19%)
Query: 113 DLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHNVFTDELQSLESL 172
D + L ++ + LS +FRGL KL L L T +S VF D+L L +L
Sbjct: 36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNL--DYNQLQT----LSAGVF-DDLTELGTL 88
Query: 173 DLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNS 232
L+ N + +LP +F L L L L N+L
Sbjct: 89 GLANNQLASLPLGVFDHLTQLDKLYLGGNQLK---------------------------- 120
Query: 233 FDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQS 292
SLP+ F RL++L+EL L N L + A D L +L L+LS N L ++P F++
Sbjct: 121 --SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRL 178
Query: 293 RDLKEVYLQNN 303
L+ + L N
Sbjct: 179 GKLQTITLFGN 189
Score = 87.4 bits (217), Expect = 4e-19
Identities = 59/239 (24%), Positives = 87/239 (36%), Gaps = 56/239 (23%)
Query: 491 LRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIG 550
L L ++ +S F L+ LT LNL N++Q + AG FD+ + L + L N L
Sbjct: 40 LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA--- 96
Query: 551 GLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFD 610
LP V FD+ L L + GNQ+ L + FD
Sbjct: 97 ----SLPLGV-----------FDH---LTQLDKLYLGGNQLKSLPS----------GVFD 128
Query: 611 ASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTAL 670
+LT+L L L N + + F NL + L N+L+++ A
Sbjct: 129 ----RLTKLK---------ELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAF 175
Query: 671 RISPLPSHKNIPDFYIGENPFQCDCN-----MQWLQSYS--VNKERNKPNLVDLDTVTC 722
L + I + N F C QW++ S V + D VTC
Sbjct: 176 --DRLGKLQTI---TLFGNQFDCSRCEILYLSQWIRENSNKVKDGTGQNLHESPDGVTC 229
Score = 83.2 bits (206), Expect = 1e-17
Identities = 41/135 (30%), Positives = 68/135 (50%), Gaps = 13/135 (9%)
Query: 465 KTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQK 524
+ LDL + +++ + L +L L L N + +S GVF+ L+ L L LA+N++
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS 97
Query: 525 VEAGTFDNNSNLVAIRLDGNYLTDI-GGLFPKLPNLVWLNISENLLEWFDYALIPA---- 579
+ G FD+ + L + L GN L + G+F +L L L ++ N L+ IPA
Sbjct: 98 LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-----SIPAGAFD 152
Query: 580 ---DLQWLDIHGNQI 591
+LQ L + NQ+
Sbjct: 153 KLTNLQTLSLSTNQL 167
Score = 59.7 bits (145), Expect = 8e-10
Identities = 42/155 (27%), Positives = 60/155 (38%), Gaps = 37/155 (23%)
Query: 101 SSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHN 160
+LS G F L +L L + ++ +L G F
Sbjct: 72 QTLSAGVFDDLTELGTLGLANNQLASLPLGVF---------------------------- 103
Query: 161 VFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCG 220
D L L+ L L N + +LP +F L L L L N+L ++ +F
Sbjct: 104 ---DHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKL------ 154
Query: 221 INLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGN 255
NL+ L LS N S+P F RL +LQ + L GN
Sbjct: 155 TNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189
Score = 34.7 bits (80), Expect = 0.13
Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Query: 610 DASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNI 665
D L + IP E L L + ++ + TF LT ++L N+L+ +
Sbjct: 20 DCQGKSLDSVPSG-IPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTL 74
>3jqh_A C-type lectin domain family 4 member M; DC-signr, four-helix
bundle, oligomerization domain, alternative splicing,
calcium, cell membrane; 2.20A {Homo sapiens}
Length = 167
Score = 105 bits (264), Expect = 3e-26
Identities = 26/167 (15%), Positives = 42/167 (25%), Gaps = 12/167 (7%)
Query: 165 ELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLR 224
EL L + L A+ L S L +L+ + +
Sbjct: 2 ELPEKSKLQEIYQELTRLKAAVGE-LPEKSKLQEIYQELTRLKA-AVGEL------PEKS 53
Query: 225 VLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNI 284
L L A L +L LT L A+ L + L L +
Sbjct: 54 KLQEIYQELTRLKAA-VGELPEKSKLQEIYQELTRL-KAAVGELPEKSKLQEIYQELTEL 111
Query: 285 PPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTE 331
+ ++ + L + L ELT+
Sbjct: 112 KAAVGELPE-KSKLQEIYQELTQLKAAVGE-LPDQSKQQQIYQELTD 156
Score = 101 bits (255), Expect = 6e-25
Identities = 27/195 (13%), Positives = 51/195 (26%), Gaps = 32/195 (16%)
Query: 268 LNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNN 327
L + L L + + L + L
Sbjct: 3 LPEKSKLQEIYQELTRLKAAVGE-------------------------LPEKSKLQEIYQ 37
Query: 328 ELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTF 387
ELT A L L Y ++ +L +++ + L L ++ +
Sbjct: 38 ELTRLK---AAVGELPEKSKLQEIYQELTRLKAAVGE-LPEKSKLQEIYQELTRLK-AAV 92
Query: 388 ASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLN 447
L L +L + ++ L S L EL ++ A+
Sbjct: 93 GELPEKSKLQEIYQELTEL-KAAVGELPEKSKLQEIYQELTQLKA-AVGELPDQSKQQQI 150
Query: 448 GNKLTEIPKVLRNLH 462
+LT++ L
Sbjct: 151 YQELTDLKTAFERLG 165
Score = 92.9 bits (232), Expect = 6e-22
Identities = 22/161 (13%), Positives = 51/161 (31%), Gaps = 5/161 (3%)
Query: 365 DLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDN 424
+L L ++ + L L +L R+ ++ L S L
Sbjct: 2 ELPEKSKLQEIYQELTRLK-AAVGELPEKSKLQEIYQELTRL-KAAVGELPEKSKLQEIY 59
Query: 425 NELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNS 484
EL ++ A+ +LT + + L L +TE+ ++
Sbjct: 60 QELTRLKA-AVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTELKA-AVGE 117
Query: 485 LHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKV 525
L + + L+ ++ + V +L + ++ +
Sbjct: 118 LPEKSKLQEIYQELTQLKAAV-GELPDQSKQQQIYQELTDL 157
Score = 89.8 bits (224), Expect = 9e-21
Identities = 24/160 (15%), Positives = 54/160 (33%), Gaps = 5/160 (3%)
Query: 390 LSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGN 449
L L +L R+ ++ L S L EL ++ A+
Sbjct: 3 LPEKSKLQEIYQELTRL-KAAVGELPEKSKLQEIYQELTRLKA-AVGELPEKSKLQEIYQ 60
Query: 450 KLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKL 509
+LT + + L L +T + ++ L + + L+ ++ + V +L
Sbjct: 61 ELTRLKAAVGELPEKSKLQEIYQELTRLKA-AVGELPEKSKLQEIYQELTELKAAV-GEL 118
Query: 510 SVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDI 549
+ L ++ +++A + + LTD+
Sbjct: 119 PEKSKLQEIYQELTQLKA-AVGELPDQSKQQQIYQELTDL 157
Score = 84.4 bits (210), Expect = 6e-19
Identities = 27/184 (14%), Positives = 45/184 (24%), Gaps = 31/184 (16%)
Query: 111 LIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHNVFTD------ 164
L + L + ++ L A + L + L + T
Sbjct: 3 LPEKSKLQEIYQELTRLKA-AVGELPEKSKL--------------QEIYQELTRLKAAVG 47
Query: 165 ELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLR 224
EL L + L A+ L S L +L+ + +
Sbjct: 48 ELPEKSKLQEIYQELTRLKAAV-GELPEKSKLQEIYQELTRLKA-AVGEL------PEKS 99
Query: 225 VLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNI 284
L L A L +L LT L A+ L + L ++
Sbjct: 100 KLQEIYQELTELKAA-VGELPEKSKLQEIYQELTQLKA-AVGELPDQSKQQQIYQELTDL 157
Query: 285 PPEL 288
Sbjct: 158 KTAF 161
Score = 72.9 bits (180), Expect = 6e-15
Identities = 23/183 (12%), Positives = 56/183 (30%), Gaps = 23/183 (12%)
Query: 460 NLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLAS 519
L L +T + ++ L + + L+ ++ + V +L + L
Sbjct: 2 ELPEKSKLQEIYQELTRLKA-AVGELPEKSKLQEIYQELTRLKAAV-GELPEKSKLQEIY 59
Query: 520 NKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYALIPA 579
++ +++A ++ LT + +LP L L + A
Sbjct: 60 QELTRLKAA-VGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTE-----LKA 113
Query: 580 D------LQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPHSVENLFL 633
L ++++L + + +LT+L + E L
Sbjct: 114 AVGELPEKSKLQEIYQELTQLKA--AVGELPDQSKQQQIYQELTDL-----KTAFER--L 164
Query: 634 TNN 636
++
Sbjct: 165 GHH 167
Score = 57.5 bits (140), Expect = 1e-09
Identities = 15/109 (13%), Positives = 33/109 (30%), Gaps = 6/109 (5%)
Query: 806 TELYLDGNRIPVVGSHSFIGR-KKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLT 864
++L + + + +G + L + + L E L+ LT
Sbjct: 7 SKLQEIYQELTRL--KAAVGELPEKSKLQEIYQELTRL-KAAVGELPEKSKLQEIYQELT 63
Query: 865 EIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITS 913
++ L +L Y ++ + L LQ + +T
Sbjct: 64 RLKA-AVGELPEKSKLQEIYQELTRLKA-AVGELPEKSKLQEIYQELTE 110
Score = 57.1 bits (139), Expect = 2e-09
Identities = 15/109 (13%), Positives = 32/109 (29%), Gaps = 6/109 (5%)
Query: 806 TELYLDGNRIPVVGSHSFIGR-KKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLT 864
++L + + + +G + L + + L E L+ LT
Sbjct: 53 SKLQEIYQELTRL--KAAVGELPEKSKLQEIYQELTRLK-AAVGELPEKSKLQEIYQELT 109
Query: 865 EIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITS 913
E+ L +L Y ++ + L Q + +T
Sbjct: 110 EL-KAAVGELPEKSKLQEIYQELTQLKA-AVGELPDQSKQQQIYQELTD 156
Score = 52.8 bits (128), Expect = 5e-08
Identities = 15/112 (13%), Positives = 32/112 (28%), Gaps = 12/112 (10%)
Query: 806 TELYLDGNR---IPVVGSHSFIGR-KKLQILFLNSSHVETIHNKTFNGLKELIILRLDDN 861
++L + + +G + L + + L E L+
Sbjct: 30 SKLQEIYQELTRLK-----AAVGELPEKSKLQEIYQELTRLK-AAVGELPEKSKLQEIYQ 83
Query: 862 RLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITS 913
LT ++ L +L Y ++ + L LQ + +T
Sbjct: 84 ELTRLKA-AVGELPEKSKLQEIYQELTELKA-AVGELPEKSKLQEIYQELTQ 133
Score = 48.6 bits (117), Expect = 1e-06
Identities = 12/64 (18%), Positives = 21/64 (32%), Gaps = 2/64 (3%)
Query: 850 LKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHN 909
L E L+ LT ++ L +L Y ++ + L LQ +
Sbjct: 3 LPEKSKLQEIYQELTRLKA-AVGELPEKSKLQEIYQELTRLKA-AVGELPEKSKLQEIYQ 60
Query: 910 RITS 913
+T
Sbjct: 61 ELTR 64
Score = 43.6 bits (104), Expect = 7e-05
Identities = 10/86 (11%), Positives = 28/86 (32%), Gaps = 5/86 (5%)
Query: 806 TELYLDGNRIPVVGSHSFIGR-KKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLT 864
++L + + + +G + L + + L E L+ LT
Sbjct: 76 SKLQEIYQELTRL--KAAVGELPEKSKLQEIYQELTELK-AAVGELPEKSKLQEIYQELT 132
Query: 865 EIRGYEFERLENLRELYLQYNKIIYI 890
+++ L + + Y ++ +
Sbjct: 133 QLK-AAVGELPDQSKQQQIYQELTDL 157
Score = 42.8 bits (102), Expect = 1e-04
Identities = 14/117 (11%), Positives = 28/117 (23%), Gaps = 36/117 (30%)
Query: 555 KLPNLVWLNISENLLEWFDYALIPAD------LQWLDIHGNQISELGNYFEIESQLRLTY 608
+LP L L + A L +++ L + +
Sbjct: 2 ELPEKSKLQEIYQELT-----RLKAAVGELPEKSKLQEIYQELTRLKA--AVGELPEKSK 54
Query: 609 FDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNI 665
+LT L +V L P +++ + L +
Sbjct: 55 LQEIYQELTRL-----KAAVGEL------------------PEKSKLQEIYQELTRL 88
Score = 36.3 bits (85), Expect = 0.024
Identities = 7/41 (17%), Positives = 13/41 (31%), Gaps = 1/41 (2%)
Query: 873 RLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITS 913
L +L Y ++ + L LQ + +T
Sbjct: 2 ELPEKSKLQEIYQELTRLKA-AVGELPEKSKLQEIYQELTR 41
Score = 32.8 bits (76), Expect = 0.36
Identities = 12/99 (12%), Positives = 24/99 (24%), Gaps = 20/99 (20%)
Query: 105 PGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTM----------- 153
+ L + L + ++ L A + L + L + + +
Sbjct: 66 KAAVGELPEKSKLQEIYQELTRLKA-AVGELPEKSKLQE--IYQELTELKAAVGELPEKS 122
Query: 154 SLDISHNVFTD------ELQSLESLDLSMNSIWTLPDAI 186
L + T EL + L A
Sbjct: 123 KLQEIYQELTQLKAAVGELPDQSKQQQIYQELTDLKTAF 161
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR,
immune system; 1.50A {Eptatretus burgeri}
Length = 208
Score = 102 bits (256), Expect = 1e-24
Identities = 52/172 (30%), Positives = 83/172 (48%), Gaps = 11/172 (6%)
Query: 769 CPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKK 828
CP+ C+C ++C + G + +P IP T L L+ N + + + F
Sbjct: 1 CPSRCSC------SGTTVECYSQGRTS-VPTGIPAQTTYLDLETNSLKSLPNGVFDELTS 53
Query: 829 LQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKII 888
L L+L + ++++ N FN L L L L N+L + F++L L+EL L N++
Sbjct: 54 LTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQ 113
Query: 889 YISNRTFLSLTHLKVLQLDHNRITSF---AVWHLSSQIQSITLTSNPWSCDC 937
+ + F LT LK L+L N++ S L+S +Q I L NPW C C
Sbjct: 114 SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTS-LQYIWLHDNPWDCTC 164
Score = 93.6 bits (233), Expect = 1e-21
Identities = 48/185 (25%), Positives = 79/185 (42%), Gaps = 29/185 (15%)
Query: 217 ARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNL 276
+RC + ++ + S+P ++ L L+ N L L + D L SLT L L
Sbjct: 3 SRCSCSGTTVECYSQGRTSVPTGIPAQT---TYLDLETNSLKSLPNGVFDELTSLTQLYL 59
Query: 277 SVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNA 336
N L ++P +FN+ L + L N + L G+F+ LTQL L L+ N+L
Sbjct: 60 GGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQS----- 114
Query: 337 ATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTL 396
L +F L +L+ L L NQ++S+ F L++L +
Sbjct: 115 ---------------------LPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYI 153
Query: 397 IMSNN 401
+ +N
Sbjct: 154 WLHDN 158
Score = 89.0 bits (221), Expect = 4e-20
Identities = 44/154 (28%), Positives = 65/154 (42%), Gaps = 5/154 (3%)
Query: 296 KEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKM 355
V + + GI Q LDL N L F L L L + NK+
Sbjct: 10 TTVECYSQGRTSVPTGIP---AQTTYLDLETNSLKSLPNGV--FDELTSLTQLYLGGNKL 64
Query: 356 NKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLT 415
L + +F L L L+L NQ++S+ F L+ L L ++ N+L+ + D LT
Sbjct: 65 QSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLT 124
Query: 416 ALSVLSLDNNELEYIEENALKNSTSLQDFHLNGN 449
L L L N+L+ + + TSLQ L+ N
Sbjct: 125 QLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158
Score = 88.2 bits (219), Expect = 9e-20
Identities = 39/127 (30%), Positives = 68/127 (53%), Gaps = 1/127 (0%)
Query: 347 VLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRI 406
L++ N + L + +F +L L L+L N+++S+ F L++L L +S N+L+ +
Sbjct: 32 YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSL 91
Query: 407 ESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPK-VLRNLHSLK 465
+ D LT L L+L+ N+L+ + + T L+D L N+L +P V L SL+
Sbjct: 92 PNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQ 151
Query: 466 TLDLGDN 472
+ L DN
Sbjct: 152 YIWLHDN 158
Score = 82.0 bits (203), Expect = 1e-17
Identities = 44/127 (34%), Positives = 63/127 (49%), Gaps = 1/127 (0%)
Query: 419 VLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPK-VLRNLHSLKTLDLGDNLITEI 477
L L+ N L+ + TSL +L GNKL +P V L SL L+L N + +
Sbjct: 32 YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSL 91
Query: 478 NNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLV 537
N + L QL L L N + ++ GVF+KL+ L L L N+++ V G FD ++L
Sbjct: 92 PNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQ 151
Query: 538 AIRLDGN 544
I L N
Sbjct: 152 YIWLHDN 158
Score = 71.2 bits (175), Expect = 6e-14
Identities = 43/129 (33%), Positives = 64/129 (49%), Gaps = 4/129 (3%)
Query: 439 TSLQDFHLNGNKLTEIP-KVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENN 497
L N L +P V L SL L LG N + + N N L L L L+ N
Sbjct: 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87
Query: 498 ISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDI-GGLFPKL 556
+ ++ GVF+KL+ L L L +N++Q + G FD + L +RL N L + G+F +L
Sbjct: 88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRL 147
Query: 557 PNL--VWLN 563
+L +WL+
Sbjct: 148 TSLQYIWLH 156
Score = 71.2 bits (175), Expect = 6e-14
Identities = 37/106 (34%), Positives = 56/106 (52%), Gaps = 1/106 (0%)
Query: 465 KTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQK 524
LDL N + + N + L L L L N + ++ GVF KL+ LT LNL++N++Q
Sbjct: 31 TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS 90
Query: 525 VEAGTFDNNSNLVAIRLDGNYLTDI-GGLFPKLPNLVWLNISENLL 569
+ G FD + L + L+ N L + G+F KL L L + +N L
Sbjct: 91 LPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQL 136
Score = 65.5 bits (160), Expect = 5e-12
Identities = 41/143 (28%), Positives = 62/143 (43%), Gaps = 13/143 (9%)
Query: 113 DLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHNVFTDELQSLESL 172
L +E + +L G F L L L L + + + VF ++L SL L
Sbjct: 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYL--GGNKLQS----LPNGVF-NKLTSLTYL 81
Query: 173 DLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNS 232
+LS N + +LP+ +F L L L L N+L ++ F L+ L L N
Sbjct: 82 NLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKL------TQLKDLRLYQNQ 135
Query: 233 FDSLPAEGFSRLSRLQELYLQGN 255
S+P F RL+ LQ ++L N
Sbjct: 136 LKSVPDGVFDRLTSLQYIWLHDN 158
Score = 46.6 bits (111), Expect = 1e-05
Identities = 35/100 (35%), Positives = 49/100 (49%), Gaps = 7/100 (7%)
Query: 102 SLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHNV 161
SL G F L L L++ ++ +L G F L +LK L L T N S + V
Sbjct: 66 SLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNT-NQLQS-----LPDGV 119
Query: 162 FTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQN 201
F D+L L+ L L N + ++PD +F L SL Y+ L N
Sbjct: 120 F-DKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158
Score = 46.6 bits (111), Expect = 1e-05
Identities = 36/172 (20%), Positives = 58/172 (33%), Gaps = 28/172 (16%)
Query: 577 IPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPHSVE--NLFLT 634
IPA +LD+ N + L N + LT NKL L L L+
Sbjct: 26 IPAQTTYLDLETNSLKSLPNG-VFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLS 84
Query: 635 NNLISKVQPYTFFMKPNLTRVDLVGNRLK-----------NINQTALRISPLPSH----- 678
N + + F L + L N+L+ + L + L S
Sbjct: 85 TNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVF 144
Query: 679 ---KNIPDFYIGENPFQCDCN-----MQWLQSYSVNKERNKPNLVDLDTVTC 722
++ ++ +NP+ C C +W+ +S RN V D+ C
Sbjct: 145 DRLTSLQYIWLHDNPWDCTCPGIRYLSEWINKHS-GVVRNSAGSVAPDSAKC 195
Score = 31.2 bits (71), Expect = 1.4
Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Query: 610 DASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLK 663
+ S T + IP L L N + + F +LT++ L GN+L+
Sbjct: 13 ECYSQGRTSVPTG-IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ 65
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance,
leucine-rich repeat glycoprotein, EGF-like domain,
signal protein; 2.8A {Drosophila melanogaster} SCOP:
c.10.2.7
Length = 192
Score = 101 bits (254), Expect = 1e-24
Identities = 62/206 (30%), Positives = 87/206 (42%), Gaps = 44/206 (21%)
Query: 769 CPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKK 828
CP C C E +DC+ G ++P IP+ TEL L+ N + + S
Sbjct: 2 CPAMCHC------EGTTVDCTGRGLK-EIPRDIPLHTTELLLNDNELGRISSDG------ 48
Query: 829 LQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKII 888
F L L+ L L N+LT I FE +++EL L NKI
Sbjct: 49 -----------------LFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91
Query: 889 YISNRTFLSLTHLKVLQLDHNRITS-----FAVWHLSSQIQSITLTSNPWSCDCDFTEKF 943
ISN+ FL L LK L L N+I+ F HL+S + S+ L SNP++C+C
Sbjct: 92 EISNKMFLGLHQLKTLNLYDNQISCVMPGSFE--HLNS-LTSLNLASNPFNCNCHL---- 144
Query: 944 RDYLQR-SRSSVHDISQIRCMTGSEV 968
+ R + RC S+V
Sbjct: 145 -AWFAEWLRKKSLNGGAARCGAPSKV 169
Score = 82.0 bits (203), Expect = 9e-18
Identities = 33/105 (31%), Positives = 55/105 (52%), Gaps = 1/105 (0%)
Query: 224 RVLDLSNNSFDSLPAEG-FSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLV 282
L L++N + ++G F RL L +L L+ N LT + +A +G + + L L N +
Sbjct: 32 TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91
Query: 283 NIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNN 327
I ++F LK + L +N I+ + PG F L L L+L++N
Sbjct: 92 EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 81.6 bits (202), Expect = 1e-17
Identities = 28/104 (26%), Positives = 50/104 (48%), Gaps = 1/104 (0%)
Query: 347 VLNIAYNKMNKLDSS-IFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKR 405
L + N++ ++ S +F L L L L+ NQ+ I N F S++ L + NK+K
Sbjct: 33 ELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKE 92
Query: 406 IESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGN 449
I + L L L+L +N++ + + ++ SL +L N
Sbjct: 93 ISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 81.2 bits (201), Expect = 2e-17
Identities = 33/108 (30%), Positives = 50/108 (46%), Gaps = 2/108 (1%)
Query: 439 TSLQDFHLNGNKLTEIPK--VLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTEN 496
+ LN N+L I + L L L+L N +T I + + L+L EN
Sbjct: 29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88
Query: 497 NISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGN 544
I IS +F L L LNL N+I V G+F++ ++L ++ L N
Sbjct: 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 80.0 bits (198), Expect = 3e-17
Identities = 33/144 (22%), Positives = 60/144 (41%), Gaps = 34/144 (23%)
Query: 283 NIPPELFNQSRDLKEVYLQNNSINVLAP-GIFNVLTQLIVLDLSNNELTEEWVNAATFSG 341
+IP E+ L +N + ++ G+F L L+ L+L N+LT
Sbjct: 26 DIPL-------HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT----------- 67
Query: 342 LHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNN 401
++ + F+ +Q L L N+I+ I F L L TL + +N
Sbjct: 68 ---------------GIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDN 112
Query: 402 KLKRIESNSLDSLTALSVLSLDNN 425
++ + S + L +L+ L+L +N
Sbjct: 113 QISCVMPGSFEHLNSLTSLNLASN 136
Score = 79.3 bits (196), Expect = 7e-17
Identities = 26/105 (24%), Positives = 50/105 (47%), Gaps = 2/105 (1%)
Query: 370 QVLHLENNQIESIHRN-TFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELE 428
L L +N++ I + F L +L L + N+L IE N+ + + + L L N+++
Sbjct: 32 TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91
Query: 429 YIEENALKNSTSLQDFHLNGNKLTEIPK-VLRNLHSLKTLDLGDN 472
I L+ +L N+++ + +L+SL +L+L N
Sbjct: 92 EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 72.3 bits (178), Expect = 2e-14
Identities = 28/110 (25%), Positives = 44/110 (40%), Gaps = 7/110 (6%)
Query: 195 YLNLTQNKLSNV-ATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQ 253
L L N+L + + F +L L+L N + F S +QEL L
Sbjct: 33 ELLLNDNELGRISSDGLFGRL------PHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86
Query: 254 GNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNN 303
N + +++ GL+ L LNL N + + P F L + L +N
Sbjct: 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 67.7 bits (166), Expect = 7e-13
Identities = 30/105 (28%), Positives = 46/105 (43%), Gaps = 2/105 (1%)
Query: 465 KTLDLGDNLITEI-NNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQ 523
L L DN + I ++ L L L L N ++ I FE S + L L NKI+
Sbjct: 32 TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91
Query: 524 KVEAGTFDNNSNLVAIRLDGNYLTDI-GGLFPKLPNLVWLNISEN 567
++ F L + L N ++ + G F L +L LN++ N
Sbjct: 92 EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 63.5 bits (155), Expect = 2e-11
Identities = 28/137 (20%), Positives = 46/137 (33%), Gaps = 38/137 (27%)
Query: 151 STMSLDISHNVFT--------DELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNK 202
T L ++ N L L L+L N + + F + L L +NK
Sbjct: 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK 89
Query: 203 LSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLAD 262
+ + + F L +L+ L L N ++ +
Sbjct: 90 IK------------------------------EISNKMFLGLHQLKTLNLYDNQISCVMP 119
Query: 263 HALDGLNSLTVLNLSVN 279
+ + LNSLT LNL+ N
Sbjct: 120 GSFEHLNSLTSLNLASN 136
Score = 58.5 bits (142), Expect = 9e-10
Identities = 32/179 (17%), Positives = 65/179 (36%), Gaps = 17/179 (9%)
Query: 577 IPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPH--SVENLFLT 634
IP L ++ N++ + + L + N+LT + NA ++ L L
Sbjct: 27 IPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86
Query: 635 NNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHKNIPDFYIGENPFQCD 694
N I ++ F L ++L N++ + + L S ++ + NPF C+
Sbjct: 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSF--EHLNSLTSL---NLASNPFNCN 141
Query: 695 CNMQWLQSYSVNKERNKPNLVDLDTVTCKLLYNRANPAILLKEAHSNQFLCEY--ETNC 751
C++ W + K ++ C + +K+ ++F C C
Sbjct: 142 CHLAWFAEWLRKKS------LNGGAARCG--APSKVRDVQIKDLPHSEFKCSSENSEGC 192
Score = 56.2 bits (136), Expect = 5e-09
Identities = 34/142 (23%), Positives = 55/142 (38%), Gaps = 17/142 (11%)
Query: 101 SSLSP-GSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISH 159
+S G F L L L ++ ++ + +F G ++ L L + +IS+
Sbjct: 42 GRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK------EISN 95
Query: 160 NVFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNK---------LSNVATFS 210
+F L L++L+L N I + F L SL+ LNL N +
Sbjct: 96 KMF-LGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKK 154
Query: 211 FSNYDTARCGINLRVLDLSNNS 232
N ARCG +V D+
Sbjct: 155 SLNGGAARCGAPSKVRDVQIKD 176
>2wfh_A SLIT homolog 2 protein C-product; developmental protein,
neurogenesis, splicing, glycoprotein, leucine-rich
repeat, disulfide bond, differentiation; 1.80A {Homo
sapiens}
Length = 193
Score = 101 bits (253), Expect = 2e-24
Identities = 53/174 (30%), Positives = 75/174 (43%), Gaps = 36/174 (20%)
Query: 768 TCPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRK 827
CP CTC V+ CS G LP IP D TELYLDGN+
Sbjct: 3 RCPTECTC------LDTVVRCSNKGLK-VLPKGIPRDVTELYLDGNQF------------ 43
Query: 828 KLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKI 887
T+ K + K L ++ L +NR++ + F + L L L YN++
Sbjct: 44 -------------TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90
Query: 888 IYISNRTFLSLTHLKVLQLDHNRITSF---AVWHLSSQIQSITLTSNPWSCDCD 938
I RTF L L++L L N I+ A LS+ + + + +NP CDC+
Sbjct: 91 RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSA-LSHLAIGANPLYCDCN 143
Score = 85.8 bits (213), Expect = 4e-19
Identities = 34/106 (32%), Positives = 57/106 (53%)
Query: 439 TSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNI 498
+ + +L+GN+ T +PK L N L +DL +N I+ ++N S +++ QL L L+ N +
Sbjct: 31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90
Query: 499 SNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGN 544
I F+ L L +L+L N I V G F++ S L + + N
Sbjct: 91 RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136
Score = 80.4 bits (199), Expect = 3e-17
Identities = 28/103 (27%), Positives = 54/103 (52%), Gaps = 1/103 (0%)
Query: 347 VLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRI 406
L + N+ L + L ++ L NN+I ++ +F++++ L TLI+S N+L+ I
Sbjct: 35 ELYLDGNQF-TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCI 93
Query: 407 ESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGN 449
+ D L +L +LSL N++ + E A + ++L + N
Sbjct: 94 PPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136
Score = 79.3 bits (196), Expect = 8e-17
Identities = 27/104 (25%), Positives = 50/104 (48%), Gaps = 2/104 (1%)
Query: 370 QVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEY 429
L+L+ NQ + ++ +L + +SNN++ + + S ++T L L L N L
Sbjct: 34 TELYLDGNQFTLVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC 92
Query: 430 IEENALKNSTSLQDFHLNGNKLTEIPK-VLRNLHSLKTLDLGDN 472
I SL+ L+GN ++ +P+ +L +L L +G N
Sbjct: 93 IPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136
Score = 76.2 bits (188), Expect = 8e-16
Identities = 33/104 (31%), Positives = 49/104 (47%), Gaps = 1/104 (0%)
Query: 224 RVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVN 283
L L N F +P E S L + L N ++ L++ + + L L LS N L
Sbjct: 34 TELYLDGNQFTLVPKE-LSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC 92
Query: 284 IPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNN 327
IPP F+ + L+ + L N I+V+ G FN L+ L L + N
Sbjct: 93 IPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136
Score = 75.0 bits (185), Expect = 2e-15
Identities = 26/105 (24%), Positives = 50/105 (47%), Gaps = 3/105 (2%)
Query: 321 VLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIE 380
L L N+ T S L +++++ N+++ L + F ++ +L L L N++
Sbjct: 35 ELYLDGNQFTLV---PKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR 91
Query: 381 SIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNN 425
I TF L +L L + N + + + + L+ALS L++ N
Sbjct: 92 CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136
Score = 75.0 bits (185), Expect = 2e-15
Identities = 34/108 (31%), Positives = 52/108 (48%), Gaps = 7/108 (6%)
Query: 196 LNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGN 255
L L N+ + V SNY +L ++DLSNN +L + FS +++L L L N
Sbjct: 36 LYLDGNQFTLVPK-ELSNY------KHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88
Query: 256 ILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNN 303
L + DGL SL +L+L N++ +P FN L + + N
Sbjct: 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136
Score = 75.0 bits (185), Expect = 2e-15
Identities = 34/130 (26%), Positives = 48/130 (36%), Gaps = 27/130 (20%)
Query: 272 TVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTE 331
T L L N +P E + + L + L NN I+ L+ F+ +TQL+ L LS N L
Sbjct: 34 TELYLDGNQFTLVPKE-LSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC 92
Query: 332 EWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLS 391
+ F L L++L L N I + F LS
Sbjct: 93 --------------------------IPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLS 126
Query: 392 NLHTLIMSNN 401
L L + N
Sbjct: 127 ALSHLAIGAN 136
Score = 73.1 bits (180), Expect = 1e-14
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 248 QELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINV 307
ELYL GN T L L LT+++LS N + + + F+ L + L N +
Sbjct: 34 TELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC 92
Query: 308 LAPGIFNVLTQLIVLDLSNNEL 329
+ P F+ L L +L L N++
Sbjct: 93 IPPRTFDGLKSLRLLSLHGNDI 114
Score = 64.2 bits (157), Expect = 1e-11
Identities = 43/171 (25%), Positives = 74/171 (43%), Gaps = 17/171 (9%)
Query: 577 IPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPHSVE--NLFLT 634
IP D+ L + GNQ + + + LT D S+N+++ L+ + + + L L+
Sbjct: 29 IPRDVTELYLDGNQFTLVPKELS--NYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILS 86
Query: 635 NNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHKNIPDFYIGENPFQCD 694
N + + P TF +L + L GN + + + A + L + ++ IG NP CD
Sbjct: 87 YNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAF--NDLSALSHL---AIGANPLYCD 141
Query: 695 CNMQWLQSYSVNKERNKPNLVDLDTVTCKLLYNRANPAILLKEAHSNQFLC 745
CNMQWL + + + C A+ +L S +F C
Sbjct: 142 CNMQWLSDWVKS------EYKEPGIARCAGPGEMADKLLL--TTPSKKFTC 184
Score = 63.9 bits (156), Expect = 2e-11
Identities = 31/111 (27%), Positives = 45/111 (40%), Gaps = 12/111 (10%)
Query: 151 STMSLDISHNVFT------DELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLS 204
L + N FT + L +DLS N I TL + F + L L L+ N+L
Sbjct: 32 DVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR 91
Query: 205 NVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGN 255
+ +F +LR+L L N +P F+ LS L L + N
Sbjct: 92 CIPPRTFDGL------KSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136
Score = 63.1 bits (154), Expect = 3e-11
Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Query: 491 LRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDI- 549
L L N + + LT+++L++N+I + +F N + L+ + L N L I
Sbjct: 36 LYLDGNQFTLVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIP 94
Query: 550 GGLFPKLPNLVWLNISENLL 569
F L +L L++ N +
Sbjct: 95 PRTFDGLKSLRLLSLHGNDI 114
Score = 56.2 bits (136), Expect = 7e-09
Identities = 31/102 (30%), Positives = 45/102 (44%), Gaps = 7/102 (6%)
Query: 100 QSSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISH 159
Q +L P L + + +I LS SF + +L TL L ++N I
Sbjct: 42 QFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLIL-SYNRLRC-----IPP 95
Query: 160 NVFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQN 201
F D L+SL L L N I +P+ F L +LS+L + N
Sbjct: 96 RTF-DGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat
protein, structural genomi center for structural
genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Length = 197
Score = 100 bits (251), Expect = 4e-24
Identities = 28/186 (15%), Positives = 66/186 (35%), Gaps = 11/186 (5%)
Query: 316 LTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLE 375
+ L + T + ++ L + +A + L + + ++ L +
Sbjct: 22 FKAYLNGLLGQSSTAN-----ITEAQMNSLTYITLANINVTDLTG--IEYAHNIKDLTIN 74
Query: 376 NNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENAL 435
N + N + LSNL L + + + +L LT+L++L + ++ + +
Sbjct: 75 NIHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKI 132
Query: 436 KNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTE 495
+ L+ N L+ L LK+L++ + + + + +L L
Sbjct: 133 NTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRGIE--DFPKLNQLYAFS 190
Query: 496 NNISNI 501
I
Sbjct: 191 QTIGGK 196
Score = 96.6 bits (241), Expect = 9e-23
Identities = 29/177 (16%), Positives = 60/177 (33%), Gaps = 10/177 (5%)
Query: 352 YNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSL 411
+ + + L + L N + + N+ L ++N +
Sbjct: 29 LLGQSSTANITEAQMNSLTYITLANINVTDL--TGIEYAHNIKDLTINNIHATNYNP--I 84
Query: 412 DSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEI-PKVLRNLHSLKTLDLG 470
L+ L L + ++ + L TSL ++ + + + L + ++DL
Sbjct: 85 SGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLS 144
Query: 471 DN-LITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVE 526
N IT+I L +L +L L + + + + E L L S I +
Sbjct: 145 YNGAITDIMPLK--TLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTIGGKK 197
Score = 92.7 bits (231), Expect = 2e-21
Identities = 25/178 (14%), Positives = 64/178 (35%), Gaps = 7/178 (3%)
Query: 391 SNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNK 450
S + + + + +L+ ++L N + + ++ + +++D +N
Sbjct: 20 STFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDLT--GIEYAHNIKDLTINNIH 77
Query: 451 LTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLS 510
T + L +L+ L + +T +L+ L L L ++ + + L
Sbjct: 78 ATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLP 136
Query: 511 VLTILNLASN-KIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISEN 567
+ ++L+ N I + L ++ + + + D G+ P L L
Sbjct: 137 KVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVHDYRGI-EDFPKLNQLYAFSQ 191
Score = 90.8 bits (226), Expect = 8e-21
Identities = 40/186 (21%), Positives = 71/186 (38%), Gaps = 12/186 (6%)
Query: 412 DSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGD 471
+ A L + I E + + T + L +T++ + H++K L + +
Sbjct: 20 STFKAYLNGLLGQSSTANITEAQMNSLTYI---TLANINVTDL-TGIEYAHNIKDLTINN 75
Query: 472 NLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFD 531
T N +S L L LR+ ++++ L+ LT+L+++ + +
Sbjct: 76 IHATNYNPIS--GLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKIN 133
Query: 532 NNSNLVAIRLDGN-YLTDIGGLFPKLPNLVWLNISENLLEWFDYALIPA--DLQWLDIHG 588
+ +I L N +TDI L LP L LNI + + DY I L L
Sbjct: 134 TLPKVNSIDLSYNGAITDIMPL-KTLPELKSLNIQFDGVH--DYRGIEDFPKLNQLYAFS 190
Query: 589 NQISEL 594
I
Sbjct: 191 QTIGGK 196
Score = 83.5 bits (207), Expect = 3e-18
Identities = 25/168 (14%), Positives = 54/168 (32%), Gaps = 13/168 (7%)
Query: 165 ELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLR 224
++ SL + L+ ++ L ++ L + +N S NL
Sbjct: 42 QMNSLTYITLANINVTDLTG--IEYAHNIKDLTINNIHATNYNPISGL--------SNLE 91
Query: 225 VLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNI 284
L + S S L+ L L + + ++ L + ++LS N +
Sbjct: 92 RLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD 151
Query: 285 PPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEE 332
L LK + +Q + ++ +L L + + +
Sbjct: 152 IMPLKTLPE-LKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGGK 196
Score = 70.4 bits (173), Expect = 8e-14
Identities = 28/243 (11%), Positives = 73/243 (30%), Gaps = 58/243 (23%)
Query: 424 NNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLN 483
+ + I ++ K + L + I + ++SL + L + +T++ +
Sbjct: 11 SQDNVNIPDSTFKAYLNG---LLGQSSTANITEA--QMNSLTYITLANINVTDLTGIE-- 63
Query: 484 SLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDG 543
H + L + + +N + LS L L + + + ++L + +
Sbjct: 64 YAHNIKDLTINNIHATNYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISH 121
Query: 544 NYLTDIG-GLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIES 602
+ D LP + +++S N I+++
Sbjct: 122 SAHDDSILTKINTLPKVNSIDLSYN---------------------GAITDIMP------ 154
Query: 603 QLRLTYFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRL 662
L L +++L + + + + F P L ++ +
Sbjct: 155 -------------LKTLP------ELKSLNIQFDGVHDYRGIEDF--PKLNQLYAFSQTI 193
Query: 663 KNI 665
Sbjct: 194 GGK 196
Score = 60.7 bits (148), Expect = 2e-10
Identities = 19/109 (17%), Positives = 37/109 (33%), Gaps = 5/109 (4%)
Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDN-RLT 864
L + G + + G L +L ++ S + N L ++ + L N +T
Sbjct: 91 ERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT 150
Query: 865 EIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITS 913
+I + L L+ L +Q++ + L L I
Sbjct: 151 DIMP--LKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGG 195
Score = 60.0 bits (146), Expect = 3e-10
Identities = 20/129 (15%), Positives = 44/129 (34%), Gaps = 7/129 (5%)
Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
+L ++ G L+ L + V + +GL L +L + + +
Sbjct: 69 KDLTINNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDD 126
Query: 866 IRGYEFERLENLRELYLQYNKIIYISNRTFLS-LTHLKVLQLDHNRITSF-AVWHLSSQI 923
+ L + + L YN I++ L L LK L + + + + + ++
Sbjct: 127 SILTKINTLPKVNSIDLSYNG--AITDIMPLKTLPELKSLNIQFDGVHDYRGIEDF-PKL 183
Query: 924 QSITLTSNP 932
+ S
Sbjct: 184 NQLYAFSQT 192
Score = 53.0 bits (128), Expect = 9e-08
Identities = 20/110 (18%), Positives = 40/110 (36%), Gaps = 7/110 (6%)
Query: 806 TELYLDGNRIPVVGSHSFIGR-KKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLT 864
T + L + + + I ++ L +N+ H +GL L LR+ +T
Sbjct: 47 TYITLANINVTDL---TGIEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVT 101
Query: 865 EIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHN-RITS 913
+ L +L L + ++ +L + + L +N IT
Sbjct: 102 SDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD 151
Score = 48.0 bits (115), Expect = 4e-06
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 101 SSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHN 160
++ +P L +L+ L + + + + GL L L + D S
Sbjct: 79 TNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSA-------HDDSIL 129
Query: 161 VFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCG 220
+ L + S+DLS N T + L L LN+ + + +
Sbjct: 130 TKINTLPKVNSIDLSYNGAITDIMPL-KTLPELKSLNIQFDGVHDYRGIEDFP------- 181
Query: 221 INLRVLDLSNNSFDSL 236
L L + +
Sbjct: 182 -KLNQLYAFSQTIGGK 196
Score = 42.6 bits (101), Expect = 2e-04
Identities = 11/110 (10%), Positives = 38/110 (34%), Gaps = 8/110 (7%)
Query: 581 LQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPHSVENLFLTNNLISK 640
L ++ + +++L IE + ++ T + ++E L + ++
Sbjct: 46 LTYITLANINVTDLTG---IEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTS 102
Query: 641 VQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHKNIPDFYIGENP 690
+ +LT +D+ + + ++ + + + + N
Sbjct: 103 DKIPNLSGLTSLTLLDISHSAHDDSI-----LTKINTLPKVNSIDLSYNG 147
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET:
NAG; 2.50A {Mus musculus}
Length = 312
Score = 102 bits (256), Expect = 1e-23
Identities = 51/317 (16%), Positives = 98/317 (30%), Gaps = 40/317 (12%)
Query: 91 IECGDMLFFQSSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDW 150
C + S + L+ D + + ++ + L LK LT+R
Sbjct: 28 FNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDII----KSLS-LKRLTVRAARIPS 82
Query: 151 STMSLDISHNVFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFS 210
+ + + LQ L +L + P + L+ LNL + +
Sbjct: 83 RILFGALRVLGIS-GLQELTLENLEVTGT-APPPLLEATGPDLNILNLRNVSWATRDAWL 140
Query: 211 FSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILT----FLADHALD 266
L+VL ++ + E L L L N ++
Sbjct: 141 AELQQWL--KPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPL 198
Query: 267 GLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSN 326
+L VL L + + + + + QL LDLS+
Sbjct: 199 KFPTLQVLALRNAGM---------------------ETPSGVCSALAAARVQLQGLDLSH 237
Query: 327 NELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNT 386
N L + A + +L LN+++ + ++ + +L VL L N+++
Sbjct: 238 NSLRDA-AGAPSCDWPSQLNSLNLSFTGLKQVPKGLPA---KLSVLDLSYNRLDRNPS-- 291
Query: 387 FASLSNLHTLIMSNNKL 403
L + L + N
Sbjct: 292 PDELPQVGNLSLKGNPF 308
Score = 99.6 bits (248), Expect = 9e-23
Identities = 62/310 (20%), Positives = 105/310 (33%), Gaps = 38/310 (12%)
Query: 177 NSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSL 236
N + ++ +SL YL + +++ F+ D + ++L+ L + S
Sbjct: 29 NCLGAADVELYGGGRSLEYLLKRVDTEADLGQFT----DIIKS-LSLKRLTVRAARIPSR 83
Query: 237 PAEGFSRL---SRLQELYLQ-----GNILTFLADHALDGLNSLTVLNLSVNNLVNIPPEL 288
G R+ S LQEL L+ G L + LN L + N+S EL
Sbjct: 84 ILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAEL 143
Query: 289 FNQS-RDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVV 347
LK + + + V L LDLS+N E
Sbjct: 144 QQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGER-------------- 189
Query: 348 LNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRI- 406
++ L F L L + + + A+ L L +S+N L+
Sbjct: 190 -----GLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAA 244
Query: 407 ESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKT 466
+ S D + L+ L+L L+ + + L L+ N+L P L +
Sbjct: 245 GAPSCDWPSQLNSLNLSFTGLKQVPKGLPAK---LSVLDLSYNRLDRNPSPDE-LPQVGN 300
Query: 467 LDLGDNLITE 476
L L N +
Sbjct: 301 LSLKGNPFLD 310
Score = 76.9 bits (189), Expect = 4e-15
Identities = 42/290 (14%), Positives = 86/290 (29%), Gaps = 35/290 (12%)
Query: 389 SLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNEL---EYIEENALKNSTSLQDFH 445
S + L + + + + +L L++ + + + LQ+
Sbjct: 42 GRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELT 101
Query: 446 LNGNKLT---EIPKVLRNLHSLKTLDLGDNLIT----EINNLSLNSLHQLAGLRLTENNI 498
L ++T P + L L+L + + L L L + + +
Sbjct: 102 LENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHS 161
Query: 499 SNISKGVFEKLSVLTILNLASNKIQK----VEAGTFDNNSNLVAIRLDGNYLTDIGGLFP 554
N S L+ L+L+ N + A L + L + G+
Sbjct: 162 LNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCS 221
Query: 555 KLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSN 614
L LQ LD+ N + + + +L + S
Sbjct: 222 ALAAA------------------RVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT 263
Query: 615 KLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKN 664
L ++ +P + L L+ N + + P + + L GN +
Sbjct: 264 GLKQVPKG-LPAKLSVLDLSYNRLDRNPSPDEL--PQVGNLSLKGNPFLD 310
Score = 61.8 bits (150), Expect = 3e-10
Identities = 54/277 (19%), Positives = 92/277 (33%), Gaps = 33/277 (11%)
Query: 412 DSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGD 471
D +A + L + EL Y +L+ D + + T+I K L LK L +
Sbjct: 23 DWSSAFNCLGAADVEL-YGGGRSLEYLLKRVDTEADLGQFTDIIKSLS----LKRLTVRA 77
Query: 472 NLITEINNLSLNSLHQLAGLRLTENNISNIS-------KGVFEKLSVLTILNLASNKIQK 524
I + +L L L E + N+ + L ILNL +
Sbjct: 78 ARIPS--RILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWAT 135
Query: 525 VEAGTFD----NNSNLVAIRLDGNYLTDI-GGLFPKLPNLVWLNISENLL---EWFDYAL 576
+A + L + + + + P L L++S+N AL
Sbjct: 136 RDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL 195
Query: 577 IPAD---LQWLDIHGNQISELGNYFE--IESQLRLTYFDASSNKLTEL---TGNAIPHSV 628
P LQ L + + ++++L D S N L + P +
Sbjct: 196 CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQL 255
Query: 629 ENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNI 665
+L L+ + +V L+ +DL NRL
Sbjct: 256 NSLNLSFTGLKQVPKGLP---AKLSVLDLSYNRLDRN 289
Score = 48.4 bits (115), Expect = 8e-06
Identities = 18/145 (12%), Positives = 39/145 (26%), Gaps = 9/145 (6%)
Query: 795 NQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFL-------NSSHVETIHNKTF 847
+L + L + L L L + + F
Sbjct: 141 AELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKF 200
Query: 848 NGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNR-TFLSLTHLKVLQL 906
L+ L + + + L+ L L +N + + + + L L L
Sbjct: 201 PTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNL 260
Query: 907 DHNRITSFAVWHLSSQIQSITLTSN 931
+ L +++ + L+ N
Sbjct: 261 SFTGLKQV-PKGLPAKLSVLDLSYN 284
Score = 46.0 bits (109), Expect = 4e-05
Identities = 26/124 (20%), Positives = 38/124 (30%), Gaps = 13/124 (10%)
Query: 795 NQLPPRIPMDATELYLDGNR---IPVVGSHSFIGRKKLQILFLNSSH---VETIHNKTFN 848
+ L P L L V S R +LQ L L SH + + +
Sbjct: 193 SALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDL--SHNSLRDAAGAPSCD 250
Query: 849 GLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDH 908
+L L L L ++ L L L YN++ + L + L L
Sbjct: 251 WPSQLNSLNLSFTGLKQVPKGLPA---KLSVLDLSYNRLDRNPS--PDELPQVGNLSLKG 305
Query: 909 NRIT 912
N
Sbjct: 306 NPFL 309
Score = 46.0 bits (109), Expect = 5e-05
Identities = 28/135 (20%), Positives = 50/135 (37%), Gaps = 11/135 (8%)
Query: 806 TELYLDGNRI----PVVGSHSFIGRKKLQILFLNSSHVETI---HNKTFNGLKELIILRL 858
+ L L N ++ + + LQ+L L ++ +ET + +L L L
Sbjct: 176 STLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDL 235
Query: 859 DDNRLTEIRGYE-FERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVW 917
N L + G + L L L + + + L VL L +NR+
Sbjct: 236 SHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP---AKLSVLDLSYNRLDRNPSP 292
Query: 918 HLSSQIQSITLTSNP 932
Q+ +++L NP
Sbjct: 293 DELPQVGNLSLKGNP 307
Score = 34.9 bits (80), Expect = 0.15
Identities = 23/120 (19%), Positives = 35/120 (29%), Gaps = 9/120 (7%)
Query: 803 MDATELYLDGNRIP---VVGSHSFIGRKKLQILFLNSSHV--ETIHNKTFNGLKELIILR 857
+ L + RIP + G+ +G LQ L L + V +L IL
Sbjct: 68 LSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILN 127
Query: 858 LDDNRLTEIRGYEFE----RLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITS 913
L + + E L+ L + + S L L L N
Sbjct: 128 LRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELG 187
Score = 32.6 bits (74), Expect = 0.71
Identities = 21/135 (15%), Positives = 44/135 (32%), Gaps = 11/135 (8%)
Query: 550 GGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISE--LGNYFEIESQLRLT 607
GG L ++ +L ++ D + L+ L + +I L + L
Sbjct: 40 GGGRSLEYLLKRVDTEADLGQFTD-IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQ 98
Query: 608 YFDASSNKLTELT----GNAIPHSVENLFLTNNLISKVQPYT----FFMKPNLTRVDLVG 659
+ ++T A + L L N + + ++KP L + +
Sbjct: 99 ELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQ 158
Query: 660 NRLKNINQTALRISP 674
N + +R+ P
Sbjct: 159 AHSLNFSCEQVRVFP 173
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte
receptors, VLR, leucine-rich repeat, LRR adaptive
immunity, immune system; HET: DR2; 1.67A {Petromyzon
marinus}
Length = 229
Score = 97.1 bits (242), Expect = 1e-22
Identities = 56/173 (32%), Positives = 87/173 (50%), Gaps = 12/173 (6%)
Query: 768 TCPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRK 827
CP+ C+C +DC + + + +P IP +A LYL N+I + F
Sbjct: 12 ACPSQCSC------SGTTVDCRSKRHAS-VPAGIPTNAQILYLHDNQITKLEPGVFDSLI 64
Query: 828 KLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKI 887
L+ L+L S+ + + F+ L +L +L L N+LT + F+RL +L+EL++ NK+
Sbjct: 65 NLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKL 124
Query: 888 IYISNRTFLSLTHLKVLQLDHNRITSF---AVWHLSSQIQSITLTSNPWSCDC 937
+ R LTHL L LD N++ S A LSS + L NPW C+C
Sbjct: 125 TELP-RGIERLTHLTHLALDQNQLKSIPHGAFDRLSS-LTHAYLFGNPWDCEC 175
Score = 92.5 bits (230), Expect = 4e-21
Identities = 41/157 (26%), Positives = 59/157 (37%), Gaps = 33/157 (21%)
Query: 248 QELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINV 307
Q LYL N +T L D L +L L L N L +P +F+ L + L N + V
Sbjct: 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV 102
Query: 308 LAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSI---FK 364
L +F+ L L L + N+LT + +
Sbjct: 103 LPSAVFDRLVHLKELFMCCNKLT------------------------------ELPRGIE 132
Query: 365 DLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNN 401
L L L L+ NQ++SI F LS+L + N
Sbjct: 133 RLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169
Score = 86.7 bits (215), Expect = 5e-19
Identities = 45/154 (29%), Positives = 70/154 (45%), Gaps = 6/154 (3%)
Query: 296 KEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKM 355
V ++ + GI T +L L +N++T+ F L L L + N++
Sbjct: 22 TTVDCRSKRHASVPAGI---PTNAQILYLHDNQITKLEPGV--FDSLINLKELYLGSNQL 76
Query: 356 NKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLT 415
L +F L +L VL L NQ+ + F L +L L M NKL + ++ LT
Sbjct: 77 GALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELP-RGIERLT 135
Query: 416 ALSVLSLDNNELEYIEENALKNSTSLQDFHLNGN 449
L+ L+LD N+L+ I A +SL +L GN
Sbjct: 136 HLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169
Score = 82.1 bits (203), Expect = 2e-17
Identities = 37/127 (29%), Positives = 60/127 (47%), Gaps = 2/127 (1%)
Query: 347 VLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRI 406
+L + N++ KL+ +F L L+ L+L +NQ+ ++ F SL+ L L + N+L +
Sbjct: 44 ILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVL 103
Query: 407 ESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPK-VLRNLHSLK 465
S D L L L + N+L + ++ T L L+ N+L IP L SL
Sbjct: 104 PSAVFDRLVHLKELFMCCNKLTELPR-GIERLTHLTHLALDQNQLKSIPHGAFDRLSSLT 162
Query: 466 TLDLGDN 472
L N
Sbjct: 163 HAYLFGN 169
Score = 81.7 bits (202), Expect = 2e-17
Identities = 41/127 (32%), Positives = 62/127 (48%)
Query: 370 QVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEY 429
Q+L+L +NQI + F SL NL L + +N+L + DSLT L+VL L N+L
Sbjct: 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV 102
Query: 430 IEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLA 489
+ L++ + NKLTE+P+ + L L L L N + I + + + L L
Sbjct: 103 LPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLT 162
Query: 490 GLRLTEN 496
L N
Sbjct: 163 HAYLFGN 169
Score = 68.6 bits (168), Expect = 7e-13
Identities = 32/105 (30%), Positives = 56/105 (53%)
Query: 465 KTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQK 524
+ L L DN IT++ +SL L L L N + + GVF+ L+ LT+L+L +N++
Sbjct: 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV 102
Query: 525 VEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLL 569
+ + FD +L + + N LT++ +L +L L + +N L
Sbjct: 103 LPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQL 147
Score = 64.3 bits (157), Expect = 2e-11
Identities = 46/147 (31%), Positives = 59/147 (40%), Gaps = 22/147 (14%)
Query: 113 DLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHNVFTDELQSLESL 172
+ + L + +I L G F L LK L L + + VF D L L L
Sbjct: 41 NAQILYLHDNQITKLEPGVFDSLINLKELYL--GSNQLGA----LPVGVF-DSLTQLTVL 93
Query: 173 DLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGI----NLRVLDL 228
DL N + LP A+F L L L + NKL+ + GI +L L L
Sbjct: 94 DLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPR-----------GIERLTHLTHLAL 142
Query: 229 SNNSFDSLPAEGFSRLSRLQELYLQGN 255
N S+P F RLS L YL GN
Sbjct: 143 DQNQLKSIPHGAFDRLSSLTHAYLFGN 169
Score = 48.9 bits (117), Expect = 3e-06
Identities = 39/173 (22%), Positives = 65/173 (37%), Gaps = 29/173 (16%)
Query: 577 IPADLQWLDIHGNQISEL-GNYFEIESQLRLTYFDASSNKLTELTGNAIPHSVE--NLFL 633
IP + Q L +H NQI++L F +S + L SN+L L + L L
Sbjct: 38 IPTNAQILYLHDNQITKLEPGVF--DSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDL 95
Query: 634 TNNLISKVQPYTFFMKPNLTRVDLVGNRLKNI-----NQTALRISPLPSH--KNIPD--- 683
N ++ + F +L + + N+L + T L L + K+IP
Sbjct: 96 GTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAF 155
Query: 684 --------FYIGENPFQCDCN-----MQWL-QSYSVNKERNKPNLVDLDTVTC 722
Y+ NP+ C+C W+ S+ + + D D+ C
Sbjct: 156 DRLSSLTHAYLFGNPWDCECRDIMYLRNWVADHTSIAMRWDGKAVNDPDSAKC 208
Score = 42.4 bits (100), Expect = 4e-04
Identities = 25/101 (24%), Positives = 40/101 (39%), Gaps = 8/101 (7%)
Query: 101 SSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHN 160
+L G F +L L L + ++ L + F L LK L + N +
Sbjct: 77 GALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCC-NKLTE-----LPRG 130
Query: 161 VFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQN 201
+ + L L L L N + ++P F L SL++ L N
Sbjct: 131 I--ERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169
Score = 32.7 bits (75), Expect = 0.61
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 610 DASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLK 663
D S + + IP + + L+L +N I+K++P F NL + L N+L
Sbjct: 25 DCRSKRHASVPAG-IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG 77
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A
resolution, N-formylmethionine, alpha subunit; HET: FME;
2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1
c.10.2.2 PDB: 1ltx_A*
Length = 567
Score = 98.7 bits (245), Expect = 3e-21
Identities = 56/346 (16%), Positives = 112/346 (32%), Gaps = 24/346 (6%)
Query: 155 LDISHNVFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNY 214
L + + + ++ ++ P + + +L + T N
Sbjct: 236 LGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNR 295
Query: 215 DTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVL 274
+ +L L++ ++ +E L + L
Sbjct: 296 PSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRD-SATDEQLFRC 354
Query: 275 NLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWV 334
LSV + EL + L P L +I+L + + L E
Sbjct: 355 ELSVEKSTVLQSEL-----------ESCKELQELEPENKWCLLTIILLMRALDPLLYEKE 403
Query: 335 NAATFSGLHRLVVLNIAYNKMNKLDSSIFKDL-----YRLQVLHLENNQIESIHRNTFAS 389
FS L + + AY + + + ++VLHL + + +
Sbjct: 404 TLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLC--HLEQ 461
Query: 390 LSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGN 449
L + L +S+N+L+ + L +L L VL +N LE ++ + N LQ+ L N
Sbjct: 462 LLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALENVDG--VANLPRLQELLLCNN 518
Query: 450 KLTEIPKV--LRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRL 493
+L + + L + L L+L N + + + L +
Sbjct: 519 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSS 564
Score = 87.5 bits (216), Expect = 9e-18
Identities = 47/259 (18%), Positives = 83/259 (32%), Gaps = 12/259 (4%)
Query: 269 NSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNE 328
L +L+ + ++ S KE L + QL +LS +
Sbjct: 302 CDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECW-CRDSATDEQLFRCELSVEK 360
Query: 329 LTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFA 388
T S L L + +I + L L E ++
Sbjct: 361 STV------LQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 414
Query: 389 SLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNG 448
L +K S + VL L + +L + L+ + L+
Sbjct: 415 DPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH--LEQLLLVTHLDLSH 472
Query: 449 NKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISK-GVFE 507
N+L +P L L L+ L DN + ++ ++ +L +L L L N + +
Sbjct: 473 NRLRALPPALAALRCLEVLQASDNALENVDGVA--NLPRLQELLLCNNRLQQSAAIQPLV 530
Query: 508 KLSVLTILNLASNKIQKVE 526
L +LNL N + + E
Sbjct: 531 SCPRLVLLNLQGNSLCQEE 549
Score = 77.5 bits (190), Expect = 1e-14
Identities = 43/259 (16%), Positives = 93/259 (35%), Gaps = 13/259 (5%)
Query: 343 HRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNK 402
L ++ I+ + L ++ E R+ A+ L +S K
Sbjct: 302 CDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRD-SATDEQLFRCELSVEK 360
Query: 403 LKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLH 462
++ + L+S L L +N ++ L + + K + +
Sbjct: 361 STVLQ-SELESCKELQELEPENKWCLLTIILLMRALDPLL-YEKETLQYFSTLKAVDPMR 418
Query: 463 SLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKI 522
+ DL + N++ + L L +++ + E+L ++T L+L+ N++
Sbjct: 419 AAYLDDL-RSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRL 475
Query: 523 QKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYALIP---- 578
+ + L ++ N L ++ G+ LP L L + N L+ A+ P
Sbjct: 476 RALPPA-LAALRCLEVLQASDNALENVDGV-ANLPRLQELLLCNNRLQQSA-AIQPLVSC 532
Query: 579 ADLQWLDIHGNQISELGNY 597
L L++ GN + +
Sbjct: 533 PRLVLLNLQGNSLCQEEGI 551
Score = 76.3 bits (187), Expect = 3e-14
Identities = 49/344 (14%), Positives = 106/344 (30%), Gaps = 8/344 (2%)
Query: 278 VNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAA 337
V N P +QS +L + +V + L + +
Sbjct: 215 VQNAFFTDPN--DQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMG 272
Query: 338 TFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLI 397
T + L++ + + + L L L + + R + + +
Sbjct: 273 TLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECV 332
Query: 398 MSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKV 457
+ ++ + L L + ++ L++ LQ L + +
Sbjct: 333 LLKDR-PECWCRDSATDEQLFRCELSVEKSTVLQSE-LESCKELQ--ELEPENKWCLLTI 388
Query: 458 LRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNL 517
+ + +L L + + L + A L + + + + + + +L+L
Sbjct: 389 ILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHL 448
Query: 518 ASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYALI 577
A + + + + + L N L + L L L S+N LE D
Sbjct: 449 AHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVAN 506
Query: 578 PADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTG 621
LQ L + N++ + + S RL + N L + G
Sbjct: 507 LPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550
Score = 73.3 bits (179), Expect = 3e-13
Identities = 44/268 (16%), Positives = 83/268 (30%), Gaps = 6/268 (2%)
Query: 401 NKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRN 460
S L L SL++ ++ S S ++ L ++ +
Sbjct: 288 RTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSAT 347
Query: 461 LHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASN 520
L +L T + + L S +L L + L L
Sbjct: 348 DEQLFRCELSVEKSTVLQSE-LESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQ 406
Query: 521 KIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYALIPAD 580
++ D L +L + L + ++ L+++ L +
Sbjct: 407 YFSTLK--AVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLL 464
Query: 581 LQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPHSVENLFLTNNLISK 640
+ LD+ N++ L + + L AS N L + G A ++ L L NN + +
Sbjct: 465 VTHLDLSHNRLRALPP--ALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQ 522
Query: 641 VQPYTFFMK-PNLTRVDLVGNRLKNINQ 667
+ P L ++L GN L
Sbjct: 523 SAAIQPLVSCPRLVLLNLQGNSLCQEEG 550
Score = 51.7 bits (123), Expect = 1e-06
Identities = 17/88 (19%), Positives = 34/88 (38%), Gaps = 3/88 (3%)
Query: 827 KKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNK 886
+ L S ++ ++ +L L LT + E+L + L L +N+
Sbjct: 417 MRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNR 474
Query: 887 IIYISNRTFLSLTHLKVLQLDHNRITSF 914
+ + +L L+VLQ N + +
Sbjct: 475 LRALPP-ALAALRCLEVLQASDNALENV 501
Score = 35.9 bits (82), Expect = 0.087
Identities = 33/251 (13%), Positives = 62/251 (24%), Gaps = 5/251 (1%)
Query: 419 VLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEIN 478
+L + + L + L + L + N
Sbjct: 235 LLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRN 294
Query: 479 NLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVA 538
S L L L + + + ++ L + + L
Sbjct: 295 RPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVL-LKDRPECWCRDSATDEQLFR 353
Query: 539 IRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNYF 598
L T + L L EN L+ L L +
Sbjct: 354 CELSVEKSTVLQSELESCKELQELEP-ENKWCLLTIILLMRALDPLLYEKETLQYFSTLK 412
Query: 599 EIESQLRLTYFDASSNKLTELTGNAIPH-SVENLFLTNNLISKVQPYTFFMKPNLTRVDL 657
++ D S L E + + + V L L + ++ + +T +DL
Sbjct: 413 AVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQL--LLVTHLDL 470
Query: 658 VGNRLKNINQT 668
NRL+ +
Sbjct: 471 SHNRLRALPPA 481
Score = 33.6 bits (76), Expect = 0.49
Identities = 17/103 (16%), Positives = 25/103 (24%), Gaps = 30/103 (29%)
Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
L N + E + L L L L +NRL +
Sbjct: 489 EVLQASDNAL------------------------ENVDG--VANLPRLQELLLCNNRLQQ 522
Query: 866 IRGYE-FERLENLRELYLQYNKIIYISN---RTFLSLTHLKVL 904
+ L L LQ N + R L + +
Sbjct: 523 SAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder,
flagella, contractIle protein; NMR {Chlamydomonas
reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Length = 198
Score = 87.4 bits (217), Expect = 1e-19
Identities = 35/133 (26%), Positives = 64/133 (48%), Gaps = 6/133 (4%)
Query: 372 LHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIE 431
LH IE + ++L L +S N +++I SL + L +LSL N ++ I
Sbjct: 30 LHGMIPPIEKMDAT-LSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKI- 85
Query: 432 ENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLS-LNSLHQLAG 490
EN + +L++ ++ N++ + + L +L+ L + +N IT + L +L +L
Sbjct: 86 ENLDAVADTLEELWISYNQIASL-SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLED 144
Query: 491 LRLTENNISNISK 503
L L N + N K
Sbjct: 145 LLLAGNPLYNDYK 157
Score = 85.1 bits (211), Expect = 8e-19
Identities = 37/161 (22%), Positives = 64/161 (39%), Gaps = 8/161 (4%)
Query: 401 NKLKRIESNSLDSLTALSVLSLDN--NELEYIEENALKNSTSLQDFHLNGNKLTEIPKVL 458
+ ++ E T + L +E ++ L + + L+ N + +I L
Sbjct: 9 DAIRIFEERKSVVATEAEKVELHGMIPPIEKMDAT-LSTLKACKHLALSTNNIEKI-SSL 66
Query: 459 RNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLA 518
+ +L+ L LG NLI +I NL L L ++ N I+++S EKL L +L ++
Sbjct: 67 SGMENLRILSLGRNLIKKIENLD-AVADTLEELWISYNQIASLSG--IEKLVNLRVLYMS 123
Query: 519 SNKIQKVEA-GTFDNNSNLVAIRLDGNYLTDIGGLFPKLPN 558
+NKI L + L GN L +
Sbjct: 124 NNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSE 164
Score = 69.3 bits (170), Expect = 2e-13
Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 8/148 (5%)
Query: 226 LDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIP 285
L + + S L + L L N + ++ L G+ +L +L+L N + I
Sbjct: 30 LHGMIPPIEKMD-ATLSTLKACKHLALSTNNIEKISS--LSGMENLRILSLGRNLIKKIE 86
Query: 286 PELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRL 345
L + L+E+++ N I L+ L L VL +SNN++T W + L +L
Sbjct: 87 N-LDAVADTLEELWISYNQIASLSG--IEKLVNLRVLYMSNNKIT-NWGEIDKLAALDKL 142
Query: 346 VVLNIAYNKM-NKLDSSIFKDLYRLQVL 372
L +A N + N + YR++V+
Sbjct: 143 EDLLLAGNPLYNDYKENNATSEYRIEVV 170
Score = 65.1 bits (159), Expect = 7e-12
Identities = 30/135 (22%), Positives = 58/135 (42%), Gaps = 17/135 (12%)
Query: 274 LNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEW 333
L+ + + + L + K + L N+I ++ + + L +L L N + +
Sbjct: 30 LHGMIPPIEKMDATLSTL-KACKHLALSTNNIEKISS--LSGMENLRILSLGRNLIKK-- 84
Query: 334 VNAATFSGLH----RLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHR-NTFA 388
L L L I+YN++ L + L L+VL++ NN+I + + A
Sbjct: 85 -----IENLDAVADTLEELWISYNQIASLSG--IEKLVNLRVLYMSNNKITNWGEIDKLA 137
Query: 389 SLSNLHTLIMSNNKL 403
+L L L+++ N L
Sbjct: 138 ALDKLEDLLLAGNPL 152
Score = 64.3 bits (157), Expect = 1e-11
Identities = 35/144 (24%), Positives = 71/144 (49%), Gaps = 9/144 (6%)
Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
EL+ I + + K + L L+++++E I + +G++ L IL L N + +
Sbjct: 28 VELHGMIPPIEKM-DATLSTLKACKHLALSTNNIEKISS--LSGMENLRILSLGRNLIKK 84
Query: 866 IRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFA-VWHLSS--Q 922
I + + L EL++ YN+I +S L +L+VL + +N+IT++ + L++ +
Sbjct: 85 IENLD-AVADTLEELWISYNQIASLSG--IEKLVNLRVLYMSNNKITNWGEIDKLAALDK 141
Query: 923 IQSITLTSNPWSCDCDFTEKFRDY 946
++ + L NP D +Y
Sbjct: 142 LEDLLLAGNPLYNDYKENNATSEY 165
Score = 61.6 bits (150), Expect = 1e-10
Identities = 29/131 (22%), Positives = 56/131 (42%), Gaps = 8/131 (6%)
Query: 222 NLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGL-NSLTVLNLSVNN 280
+ L LS N+ + + S + L+ L L N++ + + LD + ++L L +S N
Sbjct: 49 ACKHLALSTNNIEKI--SSLSGMENLRILSLGRNLIKKIEN--LDAVADTLEELWISYNQ 104
Query: 281 LVNIPPELFNQSRDLKEVYLQNNSINVLAP-GIFNVLTQLIVLDLSNNELTEEWVNAATF 339
+ ++ + +L+ +Y+ NN I L +L L L+ N L ++
Sbjct: 105 IASLSG--IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNAT 162
Query: 340 SGLHRLVVLNI 350
S VV +
Sbjct: 163 SEYRIEVVKRL 173
Score = 57.0 bits (138), Expect = 3e-09
Identities = 27/148 (18%), Positives = 51/148 (34%), Gaps = 5/148 (3%)
Query: 516 NLASNKIQKVEAGTFDNNSNLVAIRLDGNY--LTDIGGLFPKLPNLVWLNISENLLEWFD 573
+ I+ E + + L G + + L L +S N +E
Sbjct: 5 TTIKDAIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS 64
Query: 574 YALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPHSVENLFL 633
+L+ L + N I ++ N + L S N++ L+G ++ L++
Sbjct: 65 SLSGMENLRILSLGRNLIKKIENLDAVADT--LEELWISYNQIASLSGIEKLVNLRVLYM 122
Query: 634 TNNLISKVQPYTFFMK-PNLTRVDLVGN 660
+NN I+ L + L GN
Sbjct: 123 SNNKITNWGEIDKLAALDKLEDLLLAGN 150
Score = 50.8 bits (122), Expect = 5e-07
Identities = 26/110 (23%), Positives = 50/110 (45%), Gaps = 15/110 (13%)
Query: 155 LDISHNVFT-----DELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATF 209
L +S N +++L L L N I + + + +L L ++ N++++++
Sbjct: 53 LALSTNNIEKISSLSGMENLRILSLGRNLIKKI-ENLDAVADTLEELWISYNQIASLSGI 111
Query: 210 SFSNYDTARCGINLRVLDLSNNSFDSLPA-EGFSRLSRLQELYLQGNILT 258
+NLRVL +SNN + + + L +L++L L GN L
Sbjct: 112 E--------KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY 153
Score = 37.0 bits (86), Expect = 0.020
Identities = 29/126 (23%), Positives = 47/126 (37%), Gaps = 19/126 (15%)
Query: 106 GSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHN-----TDWSTMS-----L 155
+ TL K L++ I +S S G+ L+ L+L N + ++ L
Sbjct: 42 ATLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLG-RNLIKKIENLDAVADTLEEL 98
Query: 156 DISHNVFTD-----ELQSLESLDLSMNSIWTLPD-AIFCPLQSLSYLNLTQNKLSNVATF 209
IS+N +L +L L +S N I + L L L L N L N
Sbjct: 99 WISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE 158
Query: 210 SFSNYD 215
+ + +
Sbjct: 159 NNATSE 164
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148,
structural genomics, PSI-2, protein structure
initiative; 2.10A {Legionella pneumophila subsp}
Length = 362
Score = 90.2 bits (224), Expect = 3e-19
Identities = 63/370 (17%), Positives = 112/370 (30%), Gaps = 76/370 (20%)
Query: 167 QSLESLDLSMNSIW-----TLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGI 221
+ SLDLS+N+++ L A S++ LNL+ N L + A
Sbjct: 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQI-LAAIPA 80
Query: 222 NLRVLDLSNNSFDSLPAEGFSRL-----SRLQELYLQGNILT-----FLADHALDGLN-S 270
N+ L+LS N ++ + + L L N + A L S
Sbjct: 81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQ-AFSNLPAS 139
Query: 271 LTVLNLSVNNL-----VNIPPELFNQSRDLKEVYLQNNSIN-----VLAPGIFNVLTQLI 320
+T LNL N+L + L ++ + L+ N++ LA + ++ +
Sbjct: 140 ITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVT 199
Query: 321 VLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIE 380
LDLS N L + L + L+L N +
Sbjct: 200 SLDLSANLLGLKSYAE---------------------LAYIFSSIPNHVVSLNLCLNCLH 238
Query: 381 SIHRNTFASL----SNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALK 436
L +L T+ + + +K + +L A
Sbjct: 239 GPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALG-----------------AAFP 281
Query: 437 NSTSLQDFHLNGNKLT-----EIPKVLRNLH-SLKTLDLGDNLITEINNLSLNSLHQLAG 490
N + NG ++ I ++R L L + + N
Sbjct: 282 NIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIP 341
Query: 491 LRLTENNISN 500
L E+ +
Sbjct: 342 DELRESIQTC 351
Score = 73.6 bits (181), Expect = 9e-14
Identities = 45/295 (15%), Positives = 97/295 (32%), Gaps = 66/295 (22%)
Query: 317 TQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLEN 376
+ LDLS N L L+ + + L+L
Sbjct: 22 HGVTSLDLSLNNLYSI--------STVELI-------------QAFANTPASVTSLNLSG 60
Query: 377 NQIESIHRNTFASL-----SNLHTLIMSNNKLKRIESNSL-----DSLTALSVLSLDNNE 426
N + + + + +N+ +L +S N L S+ L ++VL L N+
Sbjct: 61 NSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND 120
Query: 427 L-----EYIEENALKNSTSLQDFHLNGNKLTE-----IPKVLRNLH-SLKTLDLGDNLIT 475
++ S+ +L GN L + ++L + ++ +L+L N +
Sbjct: 121 FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA 180
Query: 476 EI-----------NNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQK 524
S+ SL L+ L + + ++ + + LNL N +
Sbjct: 181 SKNCAELAKFLASIPASVTSLD-LSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHG 239
Query: 525 VE----AGTFDNNSNLVAIRLDGNYLTDIGG--------LFPKLPNLVWLNISEN 567
D+ +L + LD + + ++ FP + ++ ++ +
Sbjct: 240 PSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGK 294
Score = 70.5 bits (173), Expect = 7e-13
Identities = 47/323 (14%), Positives = 95/323 (29%), Gaps = 83/323 (25%)
Query: 114 LKDLSVEFCKIGNLSAGSF-RGLRKLKTLTLRTHNTDWSTMSLDISHNVFTDE------- 165
+ L++ + S+ + L + T+ LD+ N F+ +
Sbjct: 82 VTSLNLSGNFLSYKSSDELVKTLAAIPF-TITV---------LDLGWNDFSSKSSSEFKQ 131
Query: 166 -----LQSLESLDLSMNSI-----WTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYD 215
S+ SL+L N + L + +++ LNL N L++ + +
Sbjct: 132 AFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFL 191
Query: 216 TARCGINLRVLDLSNNSFDSLPAEGFSRL-----SRLQELYLQGNILT-----FLADHAL 265
+ ++ LDLS N + + + + L L N L L
Sbjct: 192 ASIPA-SVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKL-LK 249
Query: 266 DGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLS 325
D L L + L + + N+ E Q + L + +I++D +
Sbjct: 250 DSLKHLQTVYLDYDIVKNMSKE---QCKALGAAFPNIQK--------------IILVDKN 292
Query: 326 NNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRN 385
E+ + + I + + V L N + ++
Sbjct: 293 GKEIHPSHSIP---------------------ISNLIRELSGKADVPSLLNQCLIFAQKH 331
Query: 386 TFASL-----SNLHTLIMSNNKL 403
L I + L
Sbjct: 332 QTNIEDLNIPDELRESIQTCKPL 354
Score = 63.2 bits (154), Expect = 2e-10
Identities = 50/299 (16%), Positives = 103/299 (34%), Gaps = 58/299 (19%)
Query: 434 ALKNSTSLQDFHLNGNKLTE-----IPKVLRNLH-SLKTLDLGDNLITEI---------- 477
+ L+ N L + + N S+ +L+L N +
Sbjct: 17 FTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILA 76
Query: 478 -NNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTF-----D 531
++ SL+ L+G L+ + + K + +T+L+L N + F +
Sbjct: 77 AIPANVTSLN-LSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSN 135
Query: 532 NNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQI 591
+++ ++ L GN L + + L A IPA++ L++ GN +
Sbjct: 136 LPASITSLNLRGNDLGIKSSDE----------LIQIL------AAIPANVNSLNLRGNNL 179
Query: 592 SELGNYFEIESQLR-----LTYFDASSNKLTELTGNAI-------PHSVENLFLTNNLIS 639
+ E+ L +T D S+N L + + P+ V +L L N +
Sbjct: 180 ASKN-CAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLH 238
Query: 640 K--VQPYTFFMKPN--LTRVDLVGNRLKNINQTALR--ISPLPSHKNIPDFYIGENPFQ 692
++ L V L + +KN+++ + + P+ + I
Sbjct: 239 GPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297
Score = 54.7 bits (132), Expect = 1e-07
Identities = 32/250 (12%), Positives = 71/250 (28%), Gaps = 57/250 (22%)
Query: 114 LKDLSVEFCKIGNLSAGSF-RGLRKLKTLTLRTHNTDWSTMSLDISHNVFTDE------- 165
+ L++ +G S+ + L + + + L++ N +
Sbjct: 140 ITSLNLRGNDLGIKSSDELIQILAAIPA-NVNS---------LNLRGNNLASKNCAELAK 189
Query: 166 -----LQSLESLDLSMNSIWT-----LPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYD 215
S+ SLDLS N + L + LNL N L + +
Sbjct: 190 FLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLK 249
Query: 216 TARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLN 275
+ +L+ + L + ++ E L A + + +++
Sbjct: 250 DSLK--HLQTVYLDYDIVKNMSKEQCKALG-----------------AAFPNIQKIILVD 290
Query: 276 LSVNNL-----VNIPPELFNQSRDLKEVYLQNNSI-----NVLAPGIFNVLTQLIVLDLS 325
+ + + I + S L N + + N+ +L +
Sbjct: 291 KNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQT 350
Query: 326 NNELTEEWVN 335
L E +
Sbjct: 351 CKPLLEHHHH 360
Score = 35.5 bits (82), Expect = 0.097
Identities = 22/161 (13%), Positives = 48/161 (29%), Gaps = 31/161 (19%)
Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
T L L N + + I +HV + L L N L
Sbjct: 199 TSLDLSANLLGLKSYAEL-----AYIFSSIPNHVVS--------------LNLCLNCLHG 239
Query: 866 IRGYEF----ERLENLRELYLQYNKIIYISNRTFLSL-------THLKVLQLDHNRITSF 914
+ L++L+ +YL Y+ + +S +L + ++ + I
Sbjct: 240 PSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299
Query: 915 AVWHLSSQIQSITLT-SNPWSCDCDFTEKFRDYLQRSRSSV 954
+S+ I+ ++ P + + ++
Sbjct: 300 HSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNI 340
Score = 30.8 bits (70), Expect = 3.2
Identities = 14/87 (16%), Positives = 26/87 (29%), Gaps = 10/87 (11%)
Query: 853 LIILRLDDNRLTEIRGYEFERL-----ENLRELYLQYNKI-----IYISNRTFLSLTHLK 902
+ L L N L E ++ N+ L L N + + +
Sbjct: 53 VTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTIT 112
Query: 903 VLQLDHNRITSFAVWHLSSQIQSITLT 929
VL L N +S + ++ +
Sbjct: 113 VLDLGWNDFSSKSSSEFKQAFSNLPAS 139
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR,
immune system; 2.30A {Eptatretus burgeri}
Length = 177
Score = 85.0 bits (211), Expect = 4e-19
Identities = 50/172 (29%), Positives = 77/172 (44%), Gaps = 35/172 (20%)
Query: 769 CPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKK 828
CP+ C+C I C++ G + +P IP AT L L+ N++
Sbjct: 1 CPSRCSC------SGTEIRCNSKGLTS-VPTGIPSSATRLELESNKL------------- 40
Query: 829 LQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKII 888
+++ + F+ L +L L L N++ + F++L L LYL NK+
Sbjct: 41 -----------QSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQ 89
Query: 889 YISNRTFLSLTHLKVLQLDHNRITSF---AVWHLSSQIQSITLTSNPWSCDC 937
+ N F LT LK L LD N++ S L+S +Q I L +NPW C C
Sbjct: 90 SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTS-LQKIWLHTNPWDCSC 140
Score = 79.2 bits (196), Expect = 5e-17
Identities = 35/103 (33%), Positives = 52/103 (50%)
Query: 347 VLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRI 406
L + NK+ L +F L +L L L NQI+S+ F L+ L L + NKL+ +
Sbjct: 32 RLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSL 91
Query: 407 ESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGN 449
+ D LT L L+LD N+L+ + + TSLQ L+ N
Sbjct: 92 PNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134
Score = 76.1 bits (188), Expect = 6e-16
Identities = 34/132 (25%), Positives = 56/132 (42%), Gaps = 26/132 (19%)
Query: 294 DLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYN 353
+ L++N + L G+F+ LTQL L LS N++
Sbjct: 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ----------------------- 65
Query: 354 KMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDS 413
L +F L +L +L+L N+++S+ F L+ L L + N+LK + D
Sbjct: 66 ---SLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDR 122
Query: 414 LTALSVLSLDNN 425
LT+L + L N
Sbjct: 123 LTSLQKIWLHTN 134
Score = 74.2 bits (183), Expect = 3e-15
Identities = 34/130 (26%), Positives = 58/130 (44%), Gaps = 26/130 (20%)
Query: 272 TVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTE 331
T L L N L ++P +F++ L ++ L N I L G+F+ LT+L +L L N+L
Sbjct: 31 TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS 90
Query: 332 EWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLS 391
L + +F L +L+ L L+ NQ++S+ F L+
Sbjct: 91 --------------------------LPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLT 124
Query: 392 NLHTLIMSNN 401
+L + + N
Sbjct: 125 SLQKIWLHTN 134
Score = 74.2 bits (183), Expect = 3e-15
Identities = 30/104 (28%), Positives = 54/104 (51%), Gaps = 1/104 (0%)
Query: 370 QVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEY 429
L LE+N+++S+ F L+ L L +S N+++ + D LT L++L L N+L+
Sbjct: 31 TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS 90
Query: 430 IEENALKNSTSLQDFHLNGNKLTEIPK-VLRNLHSLKTLDLGDN 472
+ T L++ L+ N+L +P + L SL+ + L N
Sbjct: 91 LPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134
Score = 73.5 bits (181), Expect = 5e-15
Identities = 39/110 (35%), Positives = 58/110 (52%), Gaps = 2/110 (1%)
Query: 220 GI--NLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLS 277
GI + L+L +N SLP F +L++L +L L N + L D D L LT+L L
Sbjct: 25 GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84
Query: 278 VNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNN 327
N L ++P +F++ LKE+ L N + + GIF+ LT L + L N
Sbjct: 85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134
Score = 71.9 bits (177), Expect = 2e-14
Identities = 36/107 (33%), Positives = 53/107 (49%), Gaps = 1/107 (0%)
Query: 439 TSLQDFHLNGNKLTEIP-KVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENN 497
+S L NKL +P V L L L L N I + + + L +L L L EN
Sbjct: 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87
Query: 498 ISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGN 544
+ ++ GVF+KL+ L L L +N+++ V G FD ++L I L N
Sbjct: 88 LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134
Score = 70.0 bits (172), Expect = 7e-14
Identities = 36/113 (31%), Positives = 55/113 (48%), Gaps = 3/113 (2%)
Query: 217 ARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNL 276
+RC + + ++ S+P G S L L+ N L L D L LT L+L
Sbjct: 3 SRCSCSGTEIRCNSKGLTSVPT-GIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSL 59
Query: 277 SVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNEL 329
S N + ++P +F++ L +YL N + L G+F+ LTQL L L N+L
Sbjct: 60 SQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQL 112
Score = 63.4 bits (155), Expect = 1e-11
Identities = 37/102 (36%), Positives = 58/102 (56%), Gaps = 3/102 (2%)
Query: 465 KTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQK 524
L+L N + + + + L QL L L++N I ++ GVF+KL+ LTIL L NK+Q
Sbjct: 31 TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS 90
Query: 525 VEAGTFDNNSNLVAIRLDGNYLTDI-GGLFPKLPNL--VWLN 563
+ G FD + L + LD N L + G+F +L +L +WL+
Sbjct: 91 LPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 132
Score = 59.6 bits (145), Expect = 3e-10
Identities = 36/112 (32%), Positives = 51/112 (45%), Gaps = 13/112 (11%)
Query: 151 STMSLDISHNVFT-------DELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKL 203
S L++ N D+L L L LS N I +LPD +F L L+ L L +NKL
Sbjct: 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKL 88
Query: 204 SNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGN 255
++ F L+ L L N S+P F RL+ LQ+++L N
Sbjct: 89 QSLPNGVFDKL------TQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134
Score = 49.6 bits (119), Expect = 9e-07
Identities = 36/101 (35%), Positives = 47/101 (46%), Gaps = 7/101 (6%)
Query: 101 SSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHN 160
SL G F L L LS+ +I +L G F L KL L L N S + +
Sbjct: 41 QSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE-NKLQS-----LPNG 94
Query: 161 VFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQN 201
VF D+L L+ L L N + ++PD IF L SL + L N
Sbjct: 95 VF-DKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134
Score = 40.7 bits (96), Expect = 8e-04
Identities = 29/159 (18%), Positives = 53/159 (33%), Gaps = 34/159 (21%)
Query: 577 IPADLQWLDIHGNQISEL-GNYFEIESQLRLTYFDASSNKLTELTGNAIPHSV------- 628
IP+ L++ N++ L F + +LT S N++ L P V
Sbjct: 26 IPSSATRLELESNKLQSLPHGVF--DKLTQLTKLSLSQNQIQSL-----PDGVFDKLTKL 78
Query: 629 ENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHKNIPDFYIGE 688
L+L N + + F L + L N+LK++ ++ ++
Sbjct: 79 TILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGI-----FDRLTSLQKIWLHT 133
Query: 689 NPFQCDCN-----MQWLQSYSVNKERNKPNLVDLDTVTC 722
NP+ C C +WL + + C
Sbjct: 134 NPWDCSCPRIDYLSRWL--------NKNSQ-KEQGSAKC 163
Score = 36.1 bits (84), Expect = 0.028
Identities = 37/154 (24%), Positives = 53/154 (34%), Gaps = 56/154 (36%)
Query: 513 TILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWF 572
T L L SNK+Q + G FD KL L L++S+N ++
Sbjct: 31 TRLELESNKLQSLPHGVFD-----------------------KLTQLTKLSLSQNQIQ-- 65
Query: 573 DYALIP------ADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPH 626
+L L L +H N++ L N FD KLT+L
Sbjct: 66 --SLPDGVFDKLTKLTILYLHENKLQSLPN----------GVFD----KLTQLK------ 103
Query: 627 SVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGN 660
L L N + V F +L ++ L N
Sbjct: 104 ---ELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134
Score = 30.7 bits (70), Expect = 1.6
Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 610 DASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLK 663
+S LT + IP S L L +N + + F LT++ L N+++
Sbjct: 13 RCNSKGLTSVPTG-IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ 65
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral
twinning, leucine-rich repeat protein, LRR, merohedral
twinning; 2.2A {Schizosaccharomyces pombe} SCOP:
c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Length = 386
Score = 89.4 bits (222), Expect = 8e-19
Identities = 53/323 (16%), Positives = 103/323 (31%), Gaps = 60/323 (18%)
Query: 293 RDLKEVYLQNNSINVL-APGIFNVL---TQLIVLDLSNNELTEEWVN--AATFSGLHRLV 346
++ L+ ++I +F VL + + LS N + E + + L
Sbjct: 4 FSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLE 63
Query: 347 VLNIAYNKMNKLDSSI----------FKDLYRLQVLHLENNQIESIHRNTFASL----SN 392
+ + ++ I +L + L +N + +
Sbjct: 64 IAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTP 123
Query: 393 LHTLIMSNNKL-------------KRIESNSLDSLTALSVLSLDNNELE-----YIEENA 434
L L + NN L + + + L + N LE +
Sbjct: 124 LEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK-T 182
Query: 435 LKNSTSLQDFHLNGNKLTE------IPKVLRNLHSLKTLDLGDNLITE--INNLS--LNS 484
++ L + N + + + L LK LDL DN T + L+ L S
Sbjct: 183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKS 242
Query: 485 LHQLAGLRLTENNISNI-SKGVFEKLSV-----LTILNLASNKIQKVEAGTF-----DNN 533
L L L + +S + V + S L L L N+I+ T +
Sbjct: 243 WPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKM 302
Query: 534 SNLVAIRLDGNYLTDIGGLFPKL 556
+L+ + L+GN ++ + ++
Sbjct: 303 PDLLFLELNGNRFSEEDDVVDEI 325
Score = 84.0 bits (208), Expect = 5e-17
Identities = 68/426 (15%), Positives = 116/426 (27%), Gaps = 125/426 (29%)
Query: 154 SLDISHNVFTDE-----------LQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNK 202
+ + T E S++ + LS N+I +A + LS + K
Sbjct: 8 GKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIG--TEAA----RWLSEN-IASKK 60
Query: 203 LSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLAD 262
+L + + S+ + E L L +
Sbjct: 61 -------------------DLEIAEFSDIFTGRVKDEIPEALRLLLQ------------- 88
Query: 263 HALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVL 322
AL L + LS N + L + + T L L
Sbjct: 89 -ALLKCPKLHTVRLSDNA-------------------FGPTAQEPLIDFL-SKHTPLEHL 127
Query: 323 DLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESI 382
L NN L + IA + K+ L+ + N++E+
Sbjct: 128 YLHNNGLGPQAGAK-------------IARALQELAVNKKAKNAPPLRSIICGRNRLEN- 173
Query: 383 HRNTFASLSNLHTLIMSNNKLK--RIESNSLDSLTALSVLSLDNNELEYIEENALKNSTS 440
S+ S+ L ++ N + +L L
Sbjct: 174 -----GSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLL-----------EGLAYCQE 217
Query: 441 LQDFHLNGNKLTE-----IPKVLRNLHSLKTLDLGDNLITEI------NNLSLNSLHQLA 489
L+ L N T + L++ +L+ L L D L++ + S L
Sbjct: 218 LKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQ 277
Query: 490 GLRLTENNISN-----ISKGVFEKLSVLTILNLASNKIQKVEAG------TFDNNSNLVA 538
LRL N I + + EK+ L L L N+ + + F
Sbjct: 278 TLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGEL 337
Query: 539 IRLDGN 544
LD
Sbjct: 338 DELDDM 343
Score = 78.6 bits (194), Expect = 3e-15
Identities = 48/338 (14%), Positives = 93/338 (27%), Gaps = 96/338 (28%)
Query: 369 LQVLHLENNQI---------ESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSV 419
++ + L N I E+I +L S+ R++ ++L L
Sbjct: 34 VKEIVLSGNTIGTEAARWLSENIASKK-----DLEIAEFSDIFTGRVKDEIPEALRLLL- 87
Query: 420 LSLDNNELEYIEENALKNSTSLQDFHLNGNKLTE-----IPKVLRNLHSLKTLDLGDNLI 474
AL L L+ N + L L+ L L +N +
Sbjct: 88 -------------QALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGL 134
Query: 475 TE-------------INNLSLNSLHQLAGLRLTENNISN-----ISKGVFEKLSVLTILN 516
N + L + N + N +K F+ +L +
Sbjct: 135 GPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT-FQSHRLLHTVK 193
Query: 517 LASNKI-----QKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEW 571
+ N I + + L + L N T +G ++ L W
Sbjct: 194 MVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSS----------ALAIALKSW 243
Query: 572 FDYALIPADLQWLDIHGNQIS-----ELGNYFEIESQLRLTYFDASSNKLTELTGNAIPH 626
+L+ L ++ +S + + F + L N++ +
Sbjct: 244 -------PNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKT 296
Query: 627 SVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKN 664
+ + P+L ++L GNR
Sbjct: 297 V-----IDEKM------------PDLLFLELNGNRFSE 317
Score = 72.1 bits (177), Expect = 3e-13
Identities = 52/273 (19%), Positives = 83/273 (30%), Gaps = 70/273 (25%)
Query: 114 LKDLSVEFCKIGNLSAGSFRG-------LRKLKTLTLRTHNTDWSTMSLDISHNVFTDE- 165
L+ G + L K L ++ +S N F
Sbjct: 62 LEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLH-----------TVRLSDNAFGPTA 110
Query: 166 ----------LQSLESLDLSMNSI-------------WTLPDAIFCPLQSLSYLNLTQNK 202
LE L L N + + L + +N+
Sbjct: 111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170
Query: 203 LSNVATFSFSNYDTARCGINLRVLDLSNNSF-----DSLPAEGFSRLSRLQELYLQGNIL 257
L N + ++ T + L + + N + L EG + L+ L LQ N
Sbjct: 171 LENGSMKEWA--KTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTF 228
Query: 258 T-----FLADHALDGLNSLTVLNLSVNN--------LVNIPPELFNQSRDLKEVYLQNNS 304
T LA AL +L L L+ +V+ +L N L+ + LQ N
Sbjct: 229 THLGSSALAI-ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIG--LQTLRLQYNE 285
Query: 305 IN-----VLAPGIFNVLTQLIVLDLSNNELTEE 332
I L I + L+ L+L+ N +EE
Sbjct: 286 IELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE 318
Score = 67.8 bits (166), Expect = 8e-12
Identities = 53/321 (16%), Positives = 103/321 (32%), Gaps = 58/321 (18%)
Query: 113 DLKDLSVEFCKIGNLSAGSF-RGLRKLKTLTLRTHNTDWSTMSLDISHNVFTDELQ---- 167
+K++ + IG +A + K L ++S + + + L+
Sbjct: 33 SVKEIVLSGNTIGTEAARWLSENIASKKDLE----IAEFSDIFTGRVKDEIPEALRLLLQ 88
Query: 168 ------SLESLDLSMNSI-----WTLPDAIFCPLQSLSYLNLTQNKLSNV-------ATF 209
L ++ LS N+ L D + L +L L N L A
Sbjct: 89 ALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKH-TPLEHLYLHNNGLGPQAGAKIARALQ 147
Query: 210 SFSNYDTARCGINLRVLDLSNNSFDSLP----AEGFSRLSRLQELYLQGN------ILTF 259
+ A+ LR + N ++ A+ F L + + N I
Sbjct: 148 ELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHL 207
Query: 260 LADHALDGLNSLTVLNLSVNNL----VNIPPELFNQSRDLKEVYLQNNSI-NVLAPGIFN 314
L + L L VL+L N + +L+E+ L + + A + +
Sbjct: 208 LLE-GLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVD 266
Query: 315 VL-----TQLIVLDLSNNELTEEWVNA---ATFSGLHRLVVLNIAYNKMNKLDSSI---- 362
L L L NE+ + V + L+ L + N+ ++ D +
Sbjct: 267 AFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIR 326
Query: 363 --FKDLYRLQVLHLENNQIES 381
F R ++ L++ + +
Sbjct: 327 EVFSTRGRGELDELDDMEELT 347
Score = 34.7 bits (80), Expect = 0.17
Identities = 22/125 (17%), Positives = 35/125 (28%), Gaps = 20/125 (16%)
Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
LYL N + + L + + + + L + NRL
Sbjct: 125 EHLYLHNNGLGPQAGAKI-----ARALQELAVNKKAKNAPP------LRSIICGRNRLEN 173
Query: 866 IRGYE----FERLENLRELYLQYNKI-----IYISNRTFLSLTHLKVLQLDHNRITSFAV 916
E F+ L + + N I ++ LKVL L N T
Sbjct: 174 GSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGS 233
Query: 917 WHLSS 921
L+
Sbjct: 234 SALAI 238
Score = 33.1 bits (76), Expect = 0.53
Identities = 34/170 (20%), Positives = 61/170 (35%), Gaps = 26/170 (15%)
Query: 806 TELYLDGNRIPVVG----SHSFIGRKKLQILFLNSSHV--ETIHNKTFNGLKE---LIIL 856
+ NR+ + +F + L + + + + E I + GL L +L
Sbjct: 162 RSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVL 221
Query: 857 RLDDNRLTEIRGYEF----ERLENLRELYLQYNKI-----IYISNR-TFLSLTHLKVLQL 906
L DN T + + NLREL L + + + + L L+ L+L
Sbjct: 222 DLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRL 281
Query: 907 DHNRITSFAVWHLS-------SQIQSITLTSNPWSCDCDFTEKFRDYLQR 949
+N I AV L + + L N +S + D ++ R+
Sbjct: 282 QYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFST 331
Score = 30.1 bits (68), Expect = 4.9
Identities = 20/136 (14%), Positives = 41/136 (30%), Gaps = 26/136 (19%)
Query: 806 TELYLDGNRIPVVGSHSFIGR-----KKLQILFLNSSHVETIHNKTFNGLKELIILRLDD 860
E+ L GN I + + K L+I + + ++ L+ L
Sbjct: 35 KEIVLSGNTIGTEAARW-LSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLL------- 86
Query: 861 NRLTEIRGYEFERLENLRELYLQYNKI-----IYISNRTFLSLTHLKVLQLDHNRITSFA 915
+ L + L N + + T L+ L L +N + A
Sbjct: 87 -------LQALLKCPKLHTVRLSDNAFGPTAQEPLID-FLSKHTPLEHLYLHNNGLGPQA 138
Query: 916 VWHLSSQIQSITLTSN 931
++ +Q + +
Sbjct: 139 GAKIARALQELAVNKK 154
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG;
1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Length = 313
Score = 86.0 bits (214), Expect = 4e-18
Identities = 65/308 (21%), Positives = 103/308 (33%), Gaps = 57/308 (18%)
Query: 130 GSFRGLRKLKTLTLRTHNTDWSTMSLDISHNVFTDELQSLESLDLS-MNSIW-TLPDAIF 187
+ ++ L L N I ++ L L L + +N++ +P AI
Sbjct: 44 DTDTQTYRVNNLDLSGLNL---PKPYPIPSSLA--NLPYLNFLYIGGINNLVGPIPPAIA 98
Query: 188 CPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFD-SLPAEGFSRLSR 246
L L YL +T +S S L LD S N+ +LP S L
Sbjct: 99 K-LTQLHYLYITHTNVSGAIPDFLSQI------KTLVTLDFSYNALSGTLPPS-ISSLPN 150
Query: 247 LQELYLQGNILTFLADHALDGLNSL-TVLNLSVNNLV-NIPPELFNQSRDLKEVYLQNNS 304
L + GN ++ + + L T + +S N L IPP N + L V L N
Sbjct: 151 LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN--LAFVDLSRNM 208
Query: 305 INVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSI-- 362
+ A +F + L+ N L + +
Sbjct: 209 LEGDASVLFGSDKNTQKIHLAKNSL----------AF-------------------DLGK 239
Query: 363 FKDLYRLQVLHLENNQIE-SIHRNTFASLSNLHTLIMSNNKLK-RI-ESNSLDSLTALSV 419
L L L NN+I ++ + L LH+L +S N L I + +L +
Sbjct: 240 VGLSKNLNGLDLRNNRIYGTLPQ-GLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAY 298
Query: 420 LSLDNNEL 427
+ N L
Sbjct: 299 AN--NKCL 304
Score = 79.1 bits (196), Expect = 8e-16
Identities = 51/301 (16%), Positives = 99/301 (32%), Gaps = 70/301 (23%)
Query: 399 SNNKLKRIESNSLDSLTALSVLSLDNNELEYIEE--NALKNSTSLQDFHL-NGNKLT-EI 454
N + ++ ++ L L L ++L N L ++ N L I
Sbjct: 34 CNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPI 93
Query: 455 PKVLRNLHSLKTLDLGDNLIT-----EINNLSLNSLHQLAGLRLTENNIS-NISKGVFEK 508
P + L L L + ++ ++ + L L + N +S + +
Sbjct: 94 PPAIAKLTQLHYLYITHTNVSGAIPDFLSQIK-----TLVTLDFSYNALSGTLPPSIS-S 147
Query: 509 LSVLTILNLASNKIQKVEAGT----FDNNSNLV-AIRLDGNYLT-----DIGGLFPKLPN 558
L L + N+I G + + S L ++ + N LT L N
Sbjct: 148 LPNLVGITFDGNRIS----GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-----N 198
Query: 559 LVWLNISENLLEWFDYALIPAD------LQWLDIHGNQ----ISELGNYFEIESQLR-LT 607
L ++++S N+LE Q + + N + ++G + L
Sbjct: 199 LAFVDLSRNMLE----GDASVLFGSDKNTQKIHLAKNSLAFDLGKVGL-------SKNLN 247
Query: 608 YFDASSNKLTELTGNAIPHSVENL-FLT------NNLISKVQPYTFFMKPNLTRVDLVGN 660
D +N+ + G +P + L FL NNL ++ P ++ N
Sbjct: 248 GLDLRNNR---IYG-TLPQGLTQLKFLHSLNVSFNNLCGEI-PQGGNLQ-RFDVSAYANN 301
Query: 661 R 661
+
Sbjct: 302 K 302
Score = 41.4 bits (98), Expect = 0.001
Identities = 28/145 (19%), Positives = 48/145 (33%), Gaps = 32/145 (22%)
Query: 806 TELYLDGNRIPVVGS-HSFIGR-KKLQILFLNSSHVETIHNKTFNG--------LKELII 855
L L G +P S + L L++ G L +L
Sbjct: 53 NNLDLSGLNLPKPYPIPSSLANLPYLNFLYIG-------GINNLVGPIPPAIAKLTQLHY 105
Query: 856 LRLDDNRLT-EIRGYEFERLENLRELYLQYNKII-----YISNRTFLSLTHLKVLQLDHN 909
L + ++ I +++ L L YN + IS+ L +L + D N
Sbjct: 106 LYITHTNVSGAIPD-FLSQIKTLVTLDFSYNALSGTLPPSISS-----LPNLVGITFDGN 159
Query: 910 RITSF---AVWHLSSQIQSITLTSN 931
RI+ + S S+T++ N
Sbjct: 160 RISGAIPDSYGSFSKLFTSMTISRN 184
Score = 36.0 bits (84), Expect = 0.064
Identities = 26/145 (17%), Positives = 41/145 (28%), Gaps = 45/145 (31%)
Query: 793 YDNQLPPRIPMD-------ATELYLDGNR----IPVVGSHSFIGRKKLQILFLNSSHVET 841
N++ IP T + + NR IP L + L+
Sbjct: 157 DGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIP-----PTFANLNLAFVDLS------ 205
Query: 842 IHNK-------TFNGLKELIILRLDDNRLTEIRGY--EFERLENLRELYLQYNKI----- 887
N F K + L N L + +NL L L+ N+I
Sbjct: 206 -RNMLEGDASVLFGSDKNTQKIHLAKNSLA---FDLGKVGLSKNLNGLDLRNNRIYGTLP 261
Query: 888 IYISNRTFLSLTHLKVLQLDHNRIT 912
++ L L L + N +
Sbjct: 262 QGLTQ-----LKFLHSLNVSFNNLC 281
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 82.9 bits (204), Expect = 6e-17
Identities = 26/152 (17%), Positives = 53/152 (34%), Gaps = 3/152 (1%)
Query: 845 KTFNGLKELIILRLDDNR-LTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKV 903
G + L L +++ + L + + L LR L + + + +++ F L
Sbjct: 25 HHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR 84
Query: 904 LQLDHNRITSFAVWHLSS-QIQSITLTSNPWSCDCDFTEKFRDYLQRSRSSVHDISQIRC 962
L L N + S + + +Q + L+ NP C C + + + V +
Sbjct: 85 LNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRW-LQRWEEEGLGGVPEQKLQCH 143
Query: 963 MTGSEVGFTIMRTVIPSCNVVSTNVSSHSNNN 994
G +P+ V N S ++
Sbjct: 144 GQGPLAHMPNASCGVPTLKVQVPNASVDVGDD 175
Score = 77.1 bits (189), Expect = 6e-15
Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 2/86 (2%)
Query: 222 NLRVLDLS-NNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNN 280
NL L + L L L+ L + + L F+A A L+ LNLS N
Sbjct: 32 NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91
Query: 281 LVNIPPELFNQSRDLKEVYLQNNSIN 306
L ++ + Q L+E+ L N ++
Sbjct: 92 LESLSWKTV-QGLSLQELVLSGNPLH 116
Score = 76.3 bits (187), Expect = 9e-15
Identities = 20/91 (21%), Positives = 35/91 (38%), Gaps = 2/91 (2%)
Query: 338 TFSGLHRLVVLNIAYNKM-NKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTL 396
G L L I + L+ + L L+ L + + + + + F L L
Sbjct: 26 HLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRL 85
Query: 397 IMSNNKLKRIESNSLDSLTALSVLSLDNNEL 427
+S N L+ + ++ L+ L L L N L
Sbjct: 86 NLSFNALESLSWKTVQGLS-LQELVLSGNPL 115
Score = 75.9 bits (186), Expect = 1e-14
Identities = 20/102 (19%), Positives = 39/102 (38%), Gaps = 2/102 (1%)
Query: 447 NGNKLTEIPKVLRNLHSLKTLDL-GDNLITEINNLSLNSLHQLAGLRLTENNISNISKGV 505
+ + L +L L + + + L L +L L + ++ + ++
Sbjct: 16 TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDA 75
Query: 506 FEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLT 547
F L+ LNL+ N ++ + T S L + L GN L
Sbjct: 76 FHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH 116
Score = 74.8 bits (183), Expect = 3e-14
Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 1/88 (1%)
Query: 386 TFASLSNLHTLIMSNNK-LKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDF 444
NL L + N + L+ +E L L L L++ + L ++ +A + L
Sbjct: 26 HLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRL 85
Query: 445 HLNGNKLTEIPKVLRNLHSLKTLDLGDN 472
+L+ N L + SL+ L L N
Sbjct: 86 NLSFNALESLSWKTVQGLSLQELVLSGN 113
Score = 73.2 bits (179), Expect = 9e-14
Identities = 26/120 (21%), Positives = 50/120 (41%), Gaps = 10/120 (8%)
Query: 769 CPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIP--MDATELYLDGNR-IPVVGSHSFIG 825
CP+ C + ++ + C+ G + +P + TELY++ + + + G
Sbjct: 1 CPDACCPH-----GSSGLRCTRDGALD-SLHHLPGAENLTELYIENQQHLQHLELRDLRG 54
Query: 826 RKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYN 885
+L+ L + S + + F+ L L L N L + + L +L+EL L N
Sbjct: 55 LGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGL-SLQELVLSGN 113
Score = 72.1 bits (176), Expect = 2e-13
Identities = 28/114 (24%), Positives = 45/114 (39%), Gaps = 4/114 (3%)
Query: 218 RCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGN-ILTFLADHALDGLNSLTVLNL 276
+ + + + DSL L ELY++ L L L GL L L +
Sbjct: 6 CPHGSSGLRCTRDGALDSLH--HLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTI 63
Query: 277 SVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELT 330
+ L + P+ F+ + L + L N++ L+ L+ L L LS N L
Sbjct: 64 VKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH 116
Score = 70.2 bits (171), Expect = 1e-12
Identities = 25/104 (24%), Positives = 42/104 (40%), Gaps = 4/104 (3%)
Query: 300 LQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLD 359
++ +++ L L L + N + + + GL L L I + + +
Sbjct: 16 TRDGALDSLHH--LPGAENLTELYIENQQHLQH-LELRDLRGLGELRNLTIVKSGLRFVA 72
Query: 360 SSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKL 403
F RL L+L N +ES+ T LS L L++S N L
Sbjct: 73 PDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPL 115
Score = 64.4 bits (156), Expect = 7e-11
Identities = 23/102 (22%), Positives = 43/102 (42%), Gaps = 9/102 (8%)
Query: 605 RLTYFDASSNK-LTELTGNAIPH--SVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNR 661
LT + + L L + + NL + + + V P F P L+R++L N
Sbjct: 32 NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91
Query: 662 LKNINQTALRISPLPSHKNIPDFYIGENPFQCDCNMQWLQSY 703
L++++ ++ L + NP C C ++WLQ +
Sbjct: 92 LESLSWKTVQGLSLQE------LVLSGNPLHCSCALRWLQRW 127
Score = 55.5 bits (133), Expect = 4e-08
Identities = 21/87 (24%), Positives = 33/87 (37%), Gaps = 3/87 (3%)
Query: 506 FEKLSVLTILNLASNK-IQKVEAGTFDNNSNLVAIRLDGNYLTDIG-GLFPKLPNLVWLN 563
LT L + + + +Q +E L + + + L + F P L LN
Sbjct: 27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN 86
Query: 564 ISENLLEWF-DYALIPADLQWLDIHGN 589
+S N LE + LQ L + GN
Sbjct: 87 LSFNALESLSWKTVQGLSLQELVLSGN 113
Score = 55.1 bits (132), Expect = 6e-08
Identities = 26/114 (22%), Positives = 45/114 (39%), Gaps = 12/114 (10%)
Query: 91 IECGDMLFFQSSLSPGSFQTLIDLKDLSVEFCK-IGNLSAGSFRGLRKLKTLTLRTHNTD 149
+ C S +L +L +E + + +L RGL +L+ LT+ +
Sbjct: 13 LRCTRDGALDS---LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTI--VKSG 67
Query: 150 WSTMSLDISHNVFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKL 203
++ + F L L+LS N++ +L L SL L L+ N L
Sbjct: 68 LRF----VAPDAFHF-TPRLSRLNLSFNALESLSWKTVQGL-SLQELVLSGNPL 115
Score = 54.0 bits (129), Expect = 2e-07
Identities = 19/104 (18%), Positives = 35/104 (33%), Gaps = 13/104 (12%)
Query: 131 SFRGLRKLKTLTLRTHNTDWSTMSLDISHNVFTDELQSLESLDLSMNSIWTLPDAIFCPL 190
G L L + + + L L +L + + + + F
Sbjct: 26 HLPGAENLTELYIE-NQQHLQH----LELRDLRG-LGELRNLTIVKSGLRFVAPDAFHFT 79
Query: 191 QSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFD 234
LS LNL+ N L +++ + ++L+ L LS N
Sbjct: 80 PRLSRLNLSFNALESLSWKTVQG-------LSLQELVLSGNPLH 116
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP,
ribonucleoprotein, RNA binding protein/RNA complex;
2.38A {Homo sapiens} SCOP: c.10.2.4
Length = 176
Score = 78.5 bits (194), Expect = 8e-17
Identities = 34/162 (20%), Positives = 72/162 (44%), Gaps = 12/162 (7%)
Query: 321 VLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIE 380
++ L+ + + AA ++ R L++ K+ +++ + L + + +N+I
Sbjct: 1 MVKLTAELIEQ----AAQYTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIR 55
Query: 381 SIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEE-NALKNST 439
+ + F L L TL+++NN++ RI +L L+ L L NN L + + + L +
Sbjct: 56 KL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLK 113
Query: 440 SLQDFHLNGNKLTEIP----KVLRNLHSLKTLDLGDNLITEI 477
SL + N +T V+ + ++ LD + E
Sbjct: 114 SLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKER 155
Score = 73.5 bits (181), Expect = 4e-15
Identities = 32/124 (25%), Positives = 52/124 (41%), Gaps = 6/124 (4%)
Query: 446 LNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGV 505
L + + + N + LDL I I NL +L Q + ++N I +
Sbjct: 4 LTAELIEQAAQ-YTNAVRDRELDLRGYKIPVIENLG-ATLDQFDAIDFSDNEIRKLDG-- 59
Query: 506 FEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFP--KLPNLVWLN 563
F L L L + +N+I ++ G +L + L N L ++G L P L +L +L
Sbjct: 60 FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLC 119
Query: 564 ISEN 567
I N
Sbjct: 120 ILRN 123
Score = 71.2 bits (175), Expect = 3e-14
Identities = 25/129 (19%), Positives = 46/129 (35%), Gaps = 5/129 (3%)
Query: 399 SNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVL 458
+ +++ + L L ++ IE N + N++ ++
Sbjct: 5 TAELIEQAAQ--YTNAVRDRELDLRGYKIPVIE-NLGATLDQFDAIDFSDNEIRKLDG-F 60
Query: 459 RNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISK-GVFEKLSVLTILNL 517
L LKTL + +N I I +L L L LT N++ + L LT L +
Sbjct: 61 PLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCI 120
Query: 518 ASNKIQKVE 526
N + +
Sbjct: 121 LRNPVTNKK 129
Score = 65.1 bits (159), Expect = 4e-12
Identities = 34/171 (19%), Positives = 58/171 (33%), Gaps = 31/171 (18%)
Query: 491 LRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIG 550
++LT I ++ + L+L KI +E AI N + +
Sbjct: 2 VKLTAELIEQAAQ--YTNAVRDRELDLRGYKIPVIE-NLGATLDQFDAIDFSDNEIRKLD 58
Query: 551 GLFPKLPNLVWLNISENLLEWFDYALIPA--DLQWLDIHGNQISELGNYFEIESQLRLTY 608
G P L L L ++ N + L A DL L + N + ELG+
Sbjct: 59 GF-PLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGD------------ 105
Query: 609 FDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMK---PNLTRVD 656
L L S+ L + N ++ + Y ++ P + +D
Sbjct: 106 -------LDPLASL---KSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD 146
Score = 63.9 bits (156), Expect = 1e-11
Identities = 33/164 (20%), Positives = 59/164 (35%), Gaps = 15/164 (9%)
Query: 172 LDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNN 231
+ L+ I + L+L K+ + N +D S+N
Sbjct: 2 VKLTAELIEQAAQ--YTNAVRDRELDLRGYKIPVI-----ENLGATL--DQFDAIDFSDN 52
Query: 232 SFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPP-ELFN 290
L +GF L RL+ L + N + + + L LT L L+ N+LV + +
Sbjct: 53 EIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLA 110
Query: 291 QSRDLKEVYLQNNSINVLA---PGIFNVLTQLIVLDLSNNELTE 331
+ L + + N + + + Q+ VLD +L E
Sbjct: 111 SLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE 154
Score = 62.0 bits (151), Expect = 4e-11
Identities = 26/109 (23%), Positives = 50/109 (45%), Gaps = 4/109 (3%)
Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
EL L G +IPV+ + + + + + + + F L+ L L +++NR+
Sbjct: 22 RELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKLDG--FPLLRRLKTLLVNNNRICR 78
Query: 866 IRGYEFERLENLRELYLQYNKIIYISNRTFLS-LTHLKVLQLDHNRITS 913
I + L +L EL L N ++ + + L+ L L L + N +T+
Sbjct: 79 IGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN 127
Score = 61.6 bits (150), Expect = 6e-11
Identities = 34/158 (21%), Positives = 60/158 (37%), Gaps = 11/158 (6%)
Query: 467 LDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVE 526
+ L LI + + + L L I I + L ++ + N+I+K++
Sbjct: 2 VKLTAELIEQAAQ--YTNAVRDRELDLRGYKIPVIE-NLGATLDQFDAIDFSDNEIRKLD 58
Query: 527 AGTFDNNSNLVAIRLDGNYLTDI-GGLFPKLPNLVWLNISENL---LEWFDYALIPADLQ 582
F L + ++ N + I GL LP+L L ++ N L D L
Sbjct: 59 --GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLT 116
Query: 583 WLDIHGNQISELGNY--FEIESQLRLTYFDASSNKLTE 618
+L I N ++ +Y + I ++ D KL E
Sbjct: 117 YLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE 154
Score = 60.4 bits (147), Expect = 1e-10
Identities = 24/109 (22%), Positives = 43/109 (39%), Gaps = 6/109 (5%)
Query: 827 KKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNK 886
+ + L L + I N L + + DN + ++ G F L L+ L + N+
Sbjct: 19 VRDRELDLRGYKIPVIENLG-ATLDQFDAIDFSDNEIRKLDG--FPLLRRLKTLLVNNNR 75
Query: 887 IIYISNRTFLSLTHLKVLQLDHNRITSFA-VWHLSS--QIQSITLTSNP 932
I I +L L L L +N + + L+S + + + NP
Sbjct: 76 ICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNP 124
Score = 52.7 bits (127), Expect = 6e-08
Identities = 30/135 (22%), Positives = 54/135 (40%), Gaps = 6/135 (4%)
Query: 562 LNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTG 621
+ ++ L+E + LD+ G +I + N Q F S N++ +L G
Sbjct: 2 VKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDF--SDNEIRKLDG 59
Query: 622 NAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHKNI 681
+ ++ L + NN I ++ P+LT + L N L + + PL S K++
Sbjct: 60 FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGD----LDPLASLKSL 115
Query: 682 PDFYIGENPFQCDCN 696
I NP +
Sbjct: 116 TYLCILRNPVTNKKH 130
Score = 47.0 bits (112), Expect = 7e-06
Identities = 19/83 (22%), Positives = 33/83 (39%), Gaps = 10/83 (12%)
Query: 154 SLDISHNVFT-----DELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVAT 208
++D S N L+ L++L ++ N I + + + L L+ L LT N L +
Sbjct: 46 AIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGD 105
Query: 209 FSFSNYDTARCGINLRVLDLSNN 231
D +L L + N
Sbjct: 106 L-----DPLASLKSLTYLCILRN 123
Score = 45.4 bits (108), Expect = 2e-05
Identities = 15/77 (19%), Positives = 31/77 (40%), Gaps = 3/77 (3%)
Query: 855 ILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSF 914
+++L + + Y REL L+ KI I N +L + N I
Sbjct: 1 MVKLTAELIEQAAQYT--NAVRDRELDLRGYKIPVIENLG-ATLDQFDAIDFSDNEIRKL 57
Query: 915 AVWHLSSQIQSITLTSN 931
+ L +++++ + +N
Sbjct: 58 DGFPLLRRLKTLLVNNN 74
Score = 34.2 bits (79), Expect = 0.14
Identities = 17/84 (20%), Positives = 34/84 (40%), Gaps = 2/84 (2%)
Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHN-KTFNGLKELIILRLDDNRLT 864
L ++ NRI +G L L L ++ + + + LK L L + N +T
Sbjct: 67 KTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT 126
Query: 865 EIRGYEFERLENLREL-YLQYNKI 887
+ Y + + ++ L + K+
Sbjct: 127 NKKHYRLYVIYKVPQVRVLDFQKV 150
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2
protein, silver-stainable protein SSP29, acidic prote in
leucines, structural genomics; NMR {Homo sapiens} PDB:
2rr6_A 2jqd_A
Length = 168
Score = 75.5 bits (186), Expect = 9e-16
Identities = 33/124 (26%), Positives = 52/124 (41%), Gaps = 5/124 (4%)
Query: 371 VLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYI 430
VL + I A NL L + N L + + L L L L L N +
Sbjct: 30 VLDNCKSNDGKI-EGLTAEFVNLEFLSLINVGLISVSN--LPKLPKLKKLELSENRIFGG 86
Query: 431 EENALKNSTSLQDFHLNGNKLTEIP--KVLRNLHSLKTLDLGDNLITEINNLSLNSLHQL 488
+ + +L +L+GNKL +I + L+ L LK+LDL + +T +N+ + L
Sbjct: 87 LDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLL 146
Query: 489 AGLR 492
L
Sbjct: 147 PQLT 150
Score = 62.8 bits (153), Expect = 2e-11
Identities = 28/128 (21%), Positives = 51/128 (39%), Gaps = 7/128 (5%)
Query: 283 NIPPELFNQS-RDLKEVYLQNNSINVLA-PGIFNVLTQLIVLDLSNNELTEEWVNAATFS 340
I EL N++ ++E+ L N N G+ L L L N L +
Sbjct: 13 RIHLELRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS----VSNLP 68
Query: 341 GLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHR-NTFASLSNLHTLIMS 399
L +L L ++ N++ + + L L L+L N+++ I L L +L +
Sbjct: 69 KLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLF 128
Query: 400 NNKLKRIE 407
N ++ +
Sbjct: 129 NCEVTNLN 136
Score = 62.1 bits (151), Expect = 3e-11
Identities = 30/127 (23%), Positives = 51/127 (40%), Gaps = 3/127 (2%)
Query: 402 KLKRIESNSLDSLTALSVLSLDNNELEYIE-ENALKNSTSLQDFHLNGNKLTEIPKVLRN 460
K + + A+ L LDN + + E +L+ L L + L
Sbjct: 11 KRRIHLELRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPK 69
Query: 461 LHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISK-GVFEKLSVLTILNLAS 519
L LK L+L +N I ++ L L L L+ N + +IS +KL L L+L +
Sbjct: 70 LPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFN 129
Query: 520 NKIQKVE 526
++ +
Sbjct: 130 CEVTNLN 136
Score = 60.1 bits (146), Expect = 2e-10
Identities = 36/114 (31%), Positives = 51/114 (44%), Gaps = 6/114 (5%)
Query: 222 NLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNL 281
NL L L N S+ +L +L++L L N + D + L +LT LNLS N L
Sbjct: 50 NLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKL 107
Query: 282 VNIPP-ELFNQSRDLKEVYLQNNSINVLA---PGIFNVLTQLIVLDLSNNELTE 331
+I E + LK + L N + L +F +L QL LD + E E
Sbjct: 108 KDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161
Score = 58.6 bits (142), Expect = 5e-10
Identities = 30/113 (26%), Positives = 45/113 (39%), Gaps = 7/113 (6%)
Query: 459 RNLHSLKTLDLGD--NLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILN 516
R +++ L L + + +I L L L L + ++S KL L L
Sbjct: 21 RTPAAVRELVLDNCKSNDGKIEGL-TAEFVNLEFLSLINVGLISVS--NLPKLPKLKKLE 77
Query: 517 LASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFP--KLPNLVWLNISEN 567
L+ N+I + NL + L GN L DI L P KL L L++
Sbjct: 78 LSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130
Score = 55.5 bits (134), Expect = 7e-09
Identities = 27/133 (20%), Positives = 49/133 (36%), Gaps = 10/133 (7%)
Query: 243 RLSRLQELYLQGNILTFLA-DHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQ 301
+ ++EL L + +L L+L L+++ + LK++ L
Sbjct: 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELS 79
Query: 302 NNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSS 361
N I + L L L+LS N+L ++ L L L++ ++ L+
Sbjct: 80 ENRIFGGLDMLAEKLPNLTHLNLSGNKL-KDISTLEPLKKLECLKSLDLFNCEVTNLND- 137
Query: 362 IFKDLYRLQVLHL 374
YR V L
Sbjct: 138 -----YRESVFKL 145
Score = 54.0 bits (130), Expect = 2e-08
Identities = 20/109 (18%), Positives = 41/109 (37%), Gaps = 6/109 (5%)
Query: 828 KLQILFLNSSHVETIHNKTFNG-LKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNK 886
++ L L++ + L L L + L + +L L++L L N+
Sbjct: 25 AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSN--LPKLPKLKKLELSENR 82
Query: 887 IIYISNRTFLSLTHLKVLQLDHNRITSFA-VWHLSS--QIQSITLTSNP 932
I + L +L L L N++ + + L ++S+ L +
Sbjct: 83 IFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCE 131
Score = 46.3 bits (110), Expect = 1e-05
Identities = 21/113 (18%), Positives = 44/113 (38%), Gaps = 4/113 (3%)
Query: 578 PADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPHSVENLFLTNNL 637
PA ++ L + + ++ + L + + L ++ ++ L L+ N
Sbjct: 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENR 82
Query: 638 ISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHKNIPDFYIGENP 690
I PNLT ++L GN+LK+I+ + PL + + +
Sbjct: 83 IFGGLDMLAEKLPNLTHLNLSGNKLKDIST----LEPLKKLECLKSLDLFNCE 131
Score = 45.1 bits (107), Expect = 3e-05
Identities = 26/115 (22%), Positives = 48/115 (41%), Gaps = 21/115 (18%)
Query: 133 RGLRKLKTLTLRTHNTDWSTM-----------SLDISHNVFTD-----ELQSLESLDLSM 176
R ++ L L ++ + L + + +L L+ L+LS
Sbjct: 21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSE 80
Query: 177 NSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNN 231
N I+ D + L +L++LNL+ NKL +++T + + L+ LDL N
Sbjct: 81 NRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTL-----EPLKKLECLKSLDLFNC 130
Score = 43.6 bits (103), Expect = 8e-05
Identities = 18/104 (17%), Positives = 38/104 (36%), Gaps = 12/104 (11%)
Query: 566 ENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIP 625
E L F +L++L + + + N + +L + S N++
Sbjct: 42 EGLTAEFV------NLEFLSLINVGLISVSN---LPKLPKLKKLELSENRIFGGLDMLAE 92
Query: 626 H--SVENLFLTNNLISKVQPYTFFMK-PNLTRVDLVGNRLKNIN 666
++ +L L+ N + + K L +DL + N+N
Sbjct: 93 KLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLN 136
Score = 40.5 bits (95), Expect = 8e-04
Identities = 25/111 (22%), Positives = 42/111 (37%), Gaps = 8/111 (7%)
Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTE 865
L L + V + KL+ L L+ + + + L L L L N+L +
Sbjct: 52 EFLSLINVGLISVSN--LPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKD 109
Query: 866 IRGYE-FERLENLRELYLQYNKIIYISN---RTFLSLTHLKVLQLDHNRIT 912
I E ++LE L+ L L ++ +++ F L L LD
Sbjct: 110 ISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTY--LDGYDRE 158
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear
protein; 2.40A {Homo sapiens} PDB: 2je1_A
Length = 149
Score = 73.2 bits (180), Expect = 4e-15
Identities = 32/134 (23%), Positives = 56/134 (41%), Gaps = 5/134 (3%)
Query: 362 IFKDLYRLQVLHLENNQIESIH-RNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVL 420
+ ++ L L+N++ L L N L I + L L L L
Sbjct: 12 RNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIAN--LPKLNKLKKL 69
Query: 421 SLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIP--KVLRNLHSLKTLDLGDNLITEIN 478
L +N + E + +L +L+GNK+ ++ + L+ L +LK+LDL + +T +N
Sbjct: 70 ELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLN 129
Query: 479 NLSLNSLHQLAGLR 492
+ N L L
Sbjct: 130 DYRENVFKLLPQLT 143
Score = 62.8 bits (153), Expect = 2e-11
Identities = 35/152 (23%), Positives = 56/152 (36%), Gaps = 31/152 (20%)
Query: 284 IPPELFNQS-RDLKEVYLQNNSINVLA-PGIFNVLTQLIVLDLSNNELTEEWVNAATFSG 341
I EL N++ D+KE+ L N+ N G+ + +L L N LT
Sbjct: 7 IHLELRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT----------- 55
Query: 342 LHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNN 401
+ L +L+ L L +N++ NL L +S N
Sbjct: 56 -----------------SIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGN 98
Query: 402 KLKRIES-NSLDSLTALSVLSLDNNELEYIEE 432
K+K + + L L L L L N E+ + +
Sbjct: 99 KIKDLSTIEPLKKLENLKSLDLFNCEVTNLND 130
Score = 60.8 bits (148), Expect = 7e-11
Identities = 28/116 (24%), Positives = 48/116 (41%), Gaps = 3/116 (2%)
Query: 413 SLTALSVLSLDNNELEYIE-ENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGD 471
+ + + L LDN+ + E L+ LT I L L+ LK L+L D
Sbjct: 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSD 73
Query: 472 NLITEINNLSLNSLHQLAGLRLTENNISNISK-GVFEKLSVLTILNLASNKIQKVE 526
N ++ + L L L+ N I ++S +KL L L+L + ++ +
Sbjct: 74 NRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLN 129
Score = 60.5 bits (147), Expect = 8e-11
Identities = 32/113 (28%), Positives = 46/113 (40%), Gaps = 4/113 (3%)
Query: 222 NLRVLDLSNNSFDSLPAEG-FSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNN 280
+++ L L N+ + EG L+ L LT +A+ L LN L L LS N
Sbjct: 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIAN--LPKLNKLKKLELSDNR 75
Query: 281 LVNIPPELFNQSRDLKEVYLQNNSINVLA-PGIFNVLTQLIVLDLSNNELTEE 332
+ L + +L + L N I L+ L L LDL N E+T
Sbjct: 76 VSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNL 128
Score = 60.1 bits (146), Expect = 1e-10
Identities = 27/112 (24%), Positives = 47/112 (41%), Gaps = 5/112 (4%)
Query: 459 RNLHSLKTLDLGDNLITEINNLSL-NSLHQLAGLRLTENNISNISKGVFEKLSVLTILNL 517
R +K L L ++ E L + +L L +++I+ KL+ L L L
Sbjct: 14 RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIA--NLPKLNKLKKLEL 71
Query: 518 ASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFP--KLPNLVWLNISEN 567
+ N++ + NL + L GN + D+ + P KL NL L++
Sbjct: 72 SDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123
Score = 57.0 bits (138), Expect = 1e-09
Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 6/106 (5%)
Query: 222 NLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNL 281
L L N S+ +L++L++L L N ++ + + +LT LNLS N +
Sbjct: 43 ELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKI 100
Query: 282 VNIP-PELFNQSRDLKEVYLQNNSINVLA---PGIFNVLTQLIVLD 323
++ E + +LK + L N + L +F +L QL LD
Sbjct: 101 KDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLD 146
Score = 56.2 bits (136), Expect = 3e-09
Identities = 26/133 (19%), Positives = 49/133 (36%), Gaps = 10/133 (7%)
Query: 243 RLSRLQELYLQGNILTFLA-DHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQ 301
S ++EL L + + D L L+ L +I + LK++ L
Sbjct: 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELS 72
Query: 302 NNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSS 361
+N ++ + L L+LS N++ ++ L L L++ ++ L+
Sbjct: 73 DNRVSGGLEVLAEKCPNLTHLNLSGNKI-KDLSTIEPLKKLENLKSLDLFNCEVTNLND- 130
Query: 362 IFKDLYRLQVLHL 374
YR V L
Sbjct: 131 -----YRENVFKL 138
Score = 53.9 bits (130), Expect = 2e-08
Identities = 22/110 (20%), Positives = 43/110 (39%), Gaps = 6/110 (5%)
Query: 827 KKLQILFLNSSHVETIHNKT-FNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYN 885
++ L L++S + + +EL L + LT I +L L++L L N
Sbjct: 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIAN--LPKLNKLKKLELSDN 74
Query: 886 KIIYISNRTFLSLTHLKVLQLDHNRITSFA-VWHLSS--QIQSITLTSNP 932
++ +L L L N+I + + L ++S+ L +
Sbjct: 75 RVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCE 124
Score = 46.6 bits (111), Expect = 5e-06
Identities = 23/119 (19%), Positives = 51/119 (42%), Gaps = 4/119 (3%)
Query: 578 PADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPHSVENLFLTNNL 637
P+D++ L + ++ +E + L + + LT + + ++ L L++N
Sbjct: 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNR 75
Query: 638 ISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHKNIPDFYIGENPFQCDCN 696
+S PNLT ++L GN++K+++ I PL +N+ + +
Sbjct: 76 VSGGLEVLAEKCPNLTHLNLSGNKIKDLST----IEPLKKLENLKSLDLFNCEVTNLND 130
Score = 44.3 bits (105), Expect = 3e-05
Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 10/83 (12%)
Query: 154 SLDISHNVFTD-----ELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVAT 208
L + T +L L+ L+LS N + + + +L++LNL+ NK+ +
Sbjct: 46 FLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKD--- 102
Query: 209 FSFSNYDTARCGINLRVLDLSNN 231
S + + NL+ LDL N
Sbjct: 103 --LSTIEPLKKLENLKSLDLFNC 123
Score = 39.3 bits (92), Expect = 0.002
Identities = 21/102 (20%), Positives = 39/102 (38%), Gaps = 6/102 (5%)
Query: 807 ELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEI 866
L + + + KL+ L L+ + V L L L N++ ++
Sbjct: 46 FLSTINVGLTSIAN--LPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDL 103
Query: 867 RGYE-FERLENLRELYLQYNKIIYISN---RTFLSLTHLKVL 904
E ++LENL+ L L ++ +++ F L L L
Sbjct: 104 STIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYL 145
Score = 35.4 bits (82), Expect = 0.034
Identities = 17/79 (21%), Positives = 30/79 (37%), Gaps = 4/79 (5%)
Query: 806 TELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHN-KTFNGLKELIILRLDDNRLT 864
+L L NR+ L L L+ + ++ + + L+ L L L + +T
Sbjct: 67 KKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT 126
Query: 865 EIRGYE---FERLENLREL 880
+ Y F+ L L L
Sbjct: 127 NLNDYRENVFKLLPQLTYL 145
Score = 30.8 bits (70), Expect = 1.2
Identities = 8/55 (14%), Positives = 17/55 (30%), Gaps = 3/55 (5%)
Query: 860 DNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFL-SLTHLKVLQLDHNRITS 913
R+ +++EL L ++ L+ L + +TS
Sbjct: 4 GRRIHLELRNR--TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS 56
Score = 29.3 bits (66), Expect = 4.6
Identities = 24/94 (25%), Positives = 36/94 (38%), Gaps = 13/94 (13%)
Query: 108 FQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHN--TDWSTMSLDISHNVFTDE 165
L LK L + ++ L L L + N D ST+ +
Sbjct: 60 LPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL-SGNKIKDLSTIE-------PLKK 111
Query: 166 LQSLESLDLSMNSIWTLPD---AIFCPLQSLSYL 196
L++L+SLDL + L D +F L L+YL
Sbjct: 112 LENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYL 145
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 77.2 bits (189), Expect = 3e-14
Identities = 95/695 (13%), Positives = 211/695 (30%), Gaps = 179/695 (25%)
Query: 273 VLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEE 332
V N ++ ++P + + ++ + + ++++ L L E+ ++
Sbjct: 30 VDNFDCKDVQDMPKSILS-KEEIDHIIMSKDAVS-------GTLRLFWTLLSKQEEMVQK 81
Query: 333 WVNAATFSGLHRLVVLNIAYN-KMNKL-----DSSIFKDLYRLQVLHLEN-NQIESIHRN 385
+V VL I Y M+ + S+ +Y Q L N NQ+ + +
Sbjct: 82 FVEE----------VLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY-- 129
Query: 386 TFASLSNLHTLIMSNNKLKRIESNSLDSL--------TALSVLSLDNNELEYIEENALKN 437
++S L + L + + T +++ + +++ + +
Sbjct: 130 ---NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI-- 184
Query: 438 STSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENN 497
F LN VL L L+ +I+ + + ++L ++
Sbjct: 185 ------FWLNLKNCNSPETVLEML---------QKLLYQIDPNWTSRSDHSSNIKLRIHS 229
Query: 498 ISNISKGVFEKLS---VLTIL-NLASNKIQKVEAGTFDNNSN-LVAIRLDGNYLTDIGGL 552
I + + + L +L N+ + K A F+ + L+ R +
Sbjct: 230 IQAELRRLLKSKPYENCLLVLLNVQNAKA--WNA--FNLSCKILLTTR-FKQVTDFLSAA 284
Query: 553 FPKLPNLVWLNI------SENLL-EWFDYALIPADL--QWLDIHGNQISELGNYFEIESQ 603
+L ++ ++LL ++ D P DL + L + ++S + +
Sbjct: 285 TTTHISLDHHSMTLTPDEVKSLLLKYLD--CRPQDLPREVLTTNPRRLSIIAESIR-DGL 341
Query: 604 LRLTYF-DASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTR---VDLVG 659
+ + +KLT I S+ L +P R L
Sbjct: 342 ATWDNWKHVNCDKLTT----IIESSLNVL-----------------EPAEYRKMFDRLS- 379
Query: 660 NRLKNINQTALRISPLPSHKNIPD-----FYIGENPFQCDCNMQWLQSYSVNKERNKPNL 714
+ P +IP + + L YS+ +++ K +
Sbjct: 380 ------------V--FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKEST 425
Query: 715 VDLDTVTCKLLYNRANPAILLKEAHSNQFLCEYETNCAPLCHCCDFDACDCEMTCPNNCT 774
+ + ++ +L N H + Y P D D +
Sbjct: 426 ISIPSIYLELKVKLEN----EYALH-RSIVDHYN---IPKTFDSD----DLIPPYLDQYF 473
Query: 775 C----YHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQ 830
+H + + ++LD F+ +K
Sbjct: 474 YSHIGHH-------LKNIEHPERMTLFR--------MVFLD---------FRFLEQK--- 506
Query: 831 ILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLEN-LRELYLQYNKIIY 889
+ H T N + + L L L+ + + ++ERL N + + + + +
Sbjct: 507 ---IR--HDSTAWNASGSILNTLQQLKFYKPYICDNDP-KYERLVNAILDFLPKIEENLI 560
Query: 890 ISNRTFLSLTHLKVLQLDHNRITSFAVWHLSSQIQ 924
S + L + L + I A Q+Q
Sbjct: 561 CSK--YTDLLRI-ALMAEDEAIFEEA----HKQVQ 588
Score = 73.0 bits (178), Expect = 5e-13
Identities = 103/571 (18%), Positives = 172/571 (30%), Gaps = 179/571 (31%)
Query: 8 VFITVLISALGLVSASISKALR--YQAPDECKWFAVTSEGAEIEVPSAAEPDQEVALVCK 65
+F T+L +V + + LR Y K+ + E PS + + +
Sbjct: 67 LFWTLLSKQEEMVQKFVEEVLRINY------KFLM-SPIKTEQRQPS---MMTRMYIEQR 116
Query: 66 LRTINSEIENTNFSIIQAQYTVRLRIECGDMLFFQSSLSPGSFQTLIDLKDLSVEFCKIG 125
R N N F+ +Y V R++ L + +L L K++ ++ G
Sbjct: 117 DRLYND---NQVFA----KYNVS-RLQPYLKL--RQAL-----LELRPAKNVLID----G 157
Query: 126 NLSAGSFRGLRK--LKTLTLRTHNTD--------WSTMSLDISHNVFTDELQSLES-LDL 174
L +G K + ++ W + S + LQ L +D
Sbjct: 158 VLGSG------KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDP 211
Query: 175 SMNSIWTLPDAIFCPLQSLSY--LNLTQNK--------LSNV------ATFSFSNYDTAR 218
+ S I + S+ L ++K L NV F+
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNL------S 265
Query: 219 CGINLRVLDLSNNS--FDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNL 276
C ++L + D L A + +S L + +T D L L L+
Sbjct: 266 C----KILLTTRFKQVTDFLSAATTTHIS------LDHHSMTLTPDEVKSLL--LKYLDC 313
Query: 277 SVNNL----VNIPP-------ELFNQSRDLKEVYLQNN----------SINVLAP----- 310
+L + P E + + N S+NVL P
Sbjct: 314 RPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRK 373
Query: 311 -----GIFN--------VL-----------TQLIVLDLSNNELTEEWVNAATFS------ 340
+F +L ++V L L E+ +T S
Sbjct: 374 MFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYL 433
Query: 341 ----------GLHRLVVLNIAYNKMNKLDSS----IFKDLYRLQVL--HL---ENNQIES 381
LHR +V YN DS + D Y + HL E+ + +
Sbjct: 434 ELKVKLENEYALHRSIV--DHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMT 491
Query: 382 IHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNS--- 438
+ R F L K++ + S + L+ L YI +N K
Sbjct: 492 LFRMVFLDFRFL------EQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLV 545
Query: 439 TSLQDFHLNGNKLTEIPKVLRNLHSLKTLDL 469
++ DF +PK+ NL K DL
Sbjct: 546 NAILDF---------LPKIEENLICSKYTDL 567
Score = 46.0 bits (108), Expect = 9e-05
Identities = 100/659 (15%), Positives = 204/659 (30%), Gaps = 171/659 (25%)
Query: 608 YFDASSNKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTR--VDLVGNRLKNI 665
+ D + + + + + F+ N VQ K L++ +D + +
Sbjct: 6 HMDFETGEHQYQYKDILSVFEDA-FVDNFDCKDVQD---MPKSILSKEEIDHIIMSKDAV 61
Query: 666 NQTALRISPLPSH-KNIPDFYIGENPFQCDCNMQWLQSYSVNKERNKPNLVDLDTVTCK- 723
+ T L S + + ++ E N ++L S + E+ +P+++ + +
Sbjct: 62 SGTLRLFWTLLSKQEEMVQKFVEE---VLRINYKFLMS-PIKTEQRQPSMMTRMYIEQRD 117
Query: 724 LLYN-----------RANPAILLKEAHSNQFLCEYETNCAPLCH--------CCDFDAC- 763
LYN R P + L++A L E L D C
Sbjct: 118 RLYNDNQVFAKYNVSRLQPYLKLRQA-----LLELRPAKNVLIDGVLGSGKTWVALDVCL 172
Query: 764 DCEMTCPNNCTCYHDVSWEANVIDCSTGGYD----NQLPPRIPMDATELYLDGNRIPVVG 819
++ C + + W N+ +C++ +L +I + T + I +
Sbjct: 173 SYKVQCKMDF----KIFW-LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL-R 226
Query: 820 SHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDD-NRLTEIRGYEFERLENLR 878
HS + +L+ L + + L++L + +
Sbjct: 227 IHSI--QAELRRLLKSKPYENC-----------LLVL--LNVQNAKAWNAFNLS------ 265
Query: 879 ELYLQYNKII----YISNRTFLSLTHLKVLQLDHNRITS--------FAVWHLSSQIQSI 926
KI+ + FLS + LDH+ +T + L + Q +
Sbjct: 266 ------CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY-LDCRPQDL 318
Query: 927 ---TLTSNPWSCDCDFTEKFRDYLQRS----RSSVHDISQIRCMTGSEVGFTIMRTVIPS 979
LT+NP E RD L + ++ I + + + R +
Sbjct: 319 PREVLTTNPRRLSI-IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDR 377
Query: 980 CNVVSTNVSSHSNNNNNTTTTTTTTTIF---IPEHSPMNGSFILSEL--------QPQQD 1028
+V + T ++ + + M ++++L QP++
Sbjct: 378 LSVFPPSAH----------IPTILLSLIWFDVIKSDVMV---VVNKLHKYSLVEKQPKES 424
Query: 1029 YVFLLIILVSASFVLVLLLIL---IIIYRQEMRVW-------------FHSRFGVRLFYK 1072
+ + I + L L I+ + + + F+S G +
Sbjct: 425 TISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG----HH 480
Query: 1073 SSEIEMDDRDKLF-DAFVSYSSKDEAFVAEEL-APILENGDPAYKLCL-----HYREFPV 1125
IE +R LF F+ + F+ +++ L Y+
Sbjct: 481 LKNIEHPERMTLFRMVFLDFR-----FLEQKIRHDSTAWNASGSILNTLQQLKFYKP--- 532
Query: 1126 GGYIGD---TIVQAVESSRRTIMVLSENFIKSEWCR-----------YEFKSAHHQVLR 1170
YI D + V + + + EN I S++ F+ AH QV R
Sbjct: 533 --YICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589
Score = 36.8 bits (84), Expect = 0.060
Identities = 69/558 (12%), Positives = 156/558 (27%), Gaps = 145/558 (25%)
Query: 776 YHDVSWEANVIDCSTGGYDNQLP---PRIPMDATELYLDGNRI-----PVVGSHSF---- 823
+H + +E Y + L + D + ++
Sbjct: 4 HHHMDFETGEHQYQ---YKDILSVFEDAFVDN-----FDCKDVQDMPKSILSKEEIDHII 55
Query: 824 -IGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFERLENLRELYL 882
L L T+ +K +++ + L N Y+F + ++
Sbjct: 56 MSKDAVSGTLRL----FWTLLSKQEEMVQKFVEEVLRIN-------YKF-LMSPIKTEQR 103
Query: 883 Q--YNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSSQIQSITLTSNPW------- 933
Q +YI R L + + + +R+ L + L
Sbjct: 104 QPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQ--PYLKLRQALLE--LRPAKNVLIDGVL 159
Query: 934 ----SC-------DCDFTEKFRDYLQRSRSSVHDISQIRCMTGSEVGFTIMRTVIPSCNV 982
+ K + ++ C + V +++ +
Sbjct: 160 GSGKTWVALDVCLSYKVQCKMDF-------KIFWLNLKNCNSPETV-LEMLQKL---LYQ 208
Query: 983 VSTNVSSHSNNNNNTTTTTTTTTIFIPEHSPMNGSFILSELQPQQDYVFLLIIL--VSAS 1040
+ N +S S++++N I + HS L L + Y L++L V +
Sbjct: 209 IDPNWTSRSDHSSN---------IKLRIHSIQAE---LRRLLKSKPYENCLLVLLNVQNA 256
Query: 1041 FVLVLLLI---LIIIYRQEM---RVWFHSRFGVRLFYKSSEIEMDDRDKLFDAFVSYSSK 1094
+ +++ R + + + + L + S + D+ L ++ +
Sbjct: 257 KAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ 316
Query: 1095 DEAFVAEELAPILENGDPAYKLCL---HYREFPV-----GGYIGDTIVQAVESSRRTIMV 1146
D P L + R+ D + +ESS + V
Sbjct: 317 DLPREVLTTNPRR--------LSIIAESIRDGLATWDNWKHVNCDKLTTIIESS---LNV 365
Query: 1147 LSENFIKSEWCRYE----F-KSAH--HQVLRGKKRLIVILLGEVPQKDLDPDIRLYLKSN 1199
L + ++ F SAH +L ++ +V + D+ + K +
Sbjct: 366 LEPAEYRK---MFDRLSVFPPSAHIPTILL-------SLIWFDVIKSDVMVVVNKLHKYS 415
Query: 1200 TYLQWGDKLFWEKLKFALPDV------PNNQRNNNNRNQVRHLNHSAHHHNHN------- 1246
+ ++ ++P + +R+ V H N + +
Sbjct: 416 LVEKQ-----PKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD 470
Query: 1247 ---HRHHQHHHNNTSQEK 1261
+ H HH N +
Sbjct: 471 QYFYSHIGHHLKNIEHPE 488
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY,
crystallography, immune system; 1.55A {Petromyzon
marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Length = 170
Score = 64.9 bits (159), Expect = 3e-12
Identities = 30/80 (37%), Positives = 43/80 (53%)
Query: 370 QVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEY 429
QVL+L +NQI + F L+ L L + NN+L + + D LT L+ LSL++N+L+
Sbjct: 33 QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS 92
Query: 430 IEENALKNSTSLQDFHLNGN 449
I A N SL L N
Sbjct: 93 IPRGAFDNLKSLTHIWLLNN 112
Score = 64.6 bits (158), Expect = 6e-12
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 4/86 (4%)
Query: 855 ILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSF 914
+L L DN++T++ F+RL L L L N++ + F LT L L L+ N++ S
Sbjct: 34 VLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSI 93
Query: 915 ---AVWHLSSQIQSITLTSNPWSCDC 937
A +L S + I L +NPW C C
Sbjct: 94 PRGAFDNLKS-LTHIWLLNNPWDCAC 118
Score = 63.8 bits (156), Expect = 1e-11
Identities = 32/86 (37%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Query: 220 GI--NLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLS 277
GI +VL L +N L F RL++L L L N LT L D L LT L+L+
Sbjct: 27 GIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86
Query: 278 VNNLVNIPPELFNQSRDLKEVYLQNN 303
N L +IP F+ + L ++L NN
Sbjct: 87 DNQLKSIPRGAFDNLKSLTHIWLLNN 112
Score = 62.6 bits (153), Expect = 2e-11
Identities = 27/79 (34%), Positives = 46/79 (58%)
Query: 347 VLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRI 406
VL + N++ KL+ +F L +L L L+NNQ+ + F L+ L L +++N+LK I
Sbjct: 34 VLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSI 93
Query: 407 ESNSLDSLTALSVLSLDNN 425
+ D+L +L+ + L NN
Sbjct: 94 PRGAFDNLKSLTHIWLLNN 112
Score = 61.1 bits (149), Expect = 8e-11
Identities = 35/107 (32%), Positives = 54/107 (50%), Gaps = 2/107 (1%)
Query: 438 STSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENN 497
S S +G L +P + + + L L DN IT++ + L QL L L N
Sbjct: 8 SCSGTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ 65
Query: 498 ISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGN 544
++ + GVF+KL+ LT L+L N+++ + G FDN +L I L N
Sbjct: 66 LTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 112
Score = 60.7 bits (148), Expect = 1e-10
Identities = 35/108 (32%), Positives = 51/108 (47%), Gaps = 26/108 (24%)
Query: 294 DLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYN 353
+ +YL +N I L PG+F+ LTQL LDL NN+LT
Sbjct: 31 TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT----------------------- 67
Query: 354 KMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNN 401
L + +F L +L L L +NQ++SI R F +L +L + + NN
Sbjct: 68 ---VLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 112
Score = 55.3 bits (134), Expect = 8e-09
Identities = 30/113 (26%), Positives = 48/113 (42%), Gaps = 27/113 (23%)
Query: 217 ARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNL 276
++C + +D S S S+P I T + VL L
Sbjct: 5 SQCSCSGTTVDCSGKSLASVPT----------------GIPT-----------TTQVLYL 37
Query: 277 SVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNEL 329
N + + P +F++ L + L NN + VL G+F+ LTQL L L++N+L
Sbjct: 38 YDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL 90
Score = 54.2 bits (131), Expect = 2e-08
Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 391 SNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNK 450
+ L + +N++ ++E D LT L+ L LDNN+L + T L LN N+
Sbjct: 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89
Query: 451 LTEIPK-VLRNLHSLKTLDLGDN 472
L IP+ NL SL + L +N
Sbjct: 90 LKSIPRGAFDNLKSLTHIWLLNN 112
Score = 53.8 bits (130), Expect = 2e-08
Identities = 28/75 (37%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 491 LRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDI- 549
L L +N I+ + GVF++L+ LT L+L +N++ + AG FD + L + L+ N L I
Sbjct: 35 LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIP 94
Query: 550 GGLFPKLPNL--VWL 562
G F L +L +WL
Sbjct: 95 RGAFDNLKSLTHIWL 109
Score = 49.2 bits (118), Expect = 1e-06
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 513 TILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDI-GGLFPKLPNLVWLNISENLL 569
+L L N+I K+E G FD + L + LD N LT + G+F KL L L++++N L
Sbjct: 33 QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL 90
Score = 42.2 bits (100), Expect = 3e-04
Identities = 28/113 (24%), Positives = 38/113 (33%), Gaps = 39/113 (34%)
Query: 151 STMSLDISHN--------VFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNK 202
+T L + N VF D L L LDL N + LP +F L L+ L+L N+
Sbjct: 31 TTQVLYLYDNQITKLEPGVF-DRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89
Query: 203 LSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGN 255
L S+P F L L ++L N
Sbjct: 90 LK------------------------------SIPRGAFDNLKSLTHIWLLNN 112
Score = 41.4 bits (98), Expect = 4e-04
Identities = 40/154 (25%), Positives = 64/154 (41%), Gaps = 41/154 (26%)
Query: 577 IPADLQWLDIHGNQISELGN-YFEIESQLRLTYFDASSNKLTELTGNAIPHSVENLF--L 633
IP Q L ++ NQI++L F + +LT D +N+LT +P V F L
Sbjct: 28 IPTTTQVLYLYDNQITKLEPGVF--DRLTQLTRLDLDNNQLT-----VLPAGV---FDKL 77
Query: 634 TNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHKNIPDFYIGENPFQC 693
T LT++ L N+LK+I + A L S +I ++ NP+ C
Sbjct: 78 T----------------QLTQLSLNDNQLKSIPRGAF--DNLKSLTHI---WLLNNPWDC 116
Query: 694 DCN-----MQWLQSYSVNKERNKPNLVDLDTVTC 722
C+ +W+ + N +D D+ C
Sbjct: 117 ACSDILYLSRWISQHP-GLVFGYLN-LDPDSARC 148
Score = 37.6 bits (88), Expect = 0.008
Identities = 34/139 (24%), Positives = 53/139 (38%), Gaps = 26/139 (18%)
Query: 113 DLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHNVFTDELQSLESL 172
+ L + +I L G F L +L L L N + VF D+L L L
Sbjct: 31 TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDN-NQLTV-----LPAGVF-DKLTQLTQL 83
Query: 173 DLSMNSIWTLPDAIFCPLQSLSYLNLTQN------------------KLSNVATFSFSNY 214
L+ N + ++P F L+SL+++ L N V + +
Sbjct: 84 SLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSDILYLSRWISQHPGLVFGYLNLDP 143
Query: 215 DTARC-GINLRVLDLSNNS 232
D+ARC G N V ++ S
Sbjct: 144 DSARCSGTNTPVRAVTEAS 162
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich
repeat, LRR, system; 2.10A {Petromyzon marinus}
Length = 174
Score = 65.0 bits (159), Expect = 4e-12
Identities = 31/80 (38%), Positives = 40/80 (50%)
Query: 370 QVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEY 429
Q L L NNQI + F L NL L ++NKL I + D LT L+ L L++N L+
Sbjct: 36 QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKS 95
Query: 430 IEENALKNSTSLQDFHLNGN 449
I A N SL +L N
Sbjct: 96 IPRGAFDNLKSLTHIYLYNN 115
Score = 65.0 bits (159), Expect = 4e-12
Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 4/86 (4%)
Query: 855 ILRLDDNRLTEIRGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSF 914
L L++N++T++ F+ L NL++LY NK+ I F LT L L L+ N + S
Sbjct: 37 RLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSI 96
Query: 915 ---AVWHLSSQIQSITLTSNPWSCDC 937
A +L S + I L +NPW C+C
Sbjct: 97 PRGAFDNLKS-LTHIYLYNNPWDCEC 121
Score = 63.8 bits (156), Expect = 1e-11
Identities = 32/86 (37%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 220 GI--NLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLS 277
GI + + L L+NN L F L LQ+LY N LT + D L LT L+L+
Sbjct: 30 GIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN 89
Query: 278 VNNLVNIPPELFNQSRDLKEVYLQNN 303
N+L +IP F+ + L +YL NN
Sbjct: 90 DNHLKSIPRGAFDNLKSLTHIYLYNN 115
Score = 61.5 bits (150), Expect = 6e-11
Identities = 25/79 (31%), Positives = 44/79 (55%)
Query: 347 VLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRI 406
L + N++ KL+ +F L LQ L+ +N++ +I F L+ L L +++N LK I
Sbjct: 37 RLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSI 96
Query: 407 ESNSLDSLTALSVLSLDNN 425
+ D+L +L+ + L NN
Sbjct: 97 PRGAFDNLKSLTHIYLYNN 115
Score = 60.7 bits (148), Expect = 1e-10
Identities = 31/107 (28%), Positives = 49/107 (45%), Gaps = 2/107 (1%)
Query: 438 STSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENN 497
S + +L +P + + L L +N IT++ + L L L N
Sbjct: 11 SCDQTLVNCQNIRLASVPAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNK 68
Query: 498 ISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGN 544
++ I GVF+KL+ LT L+L N ++ + G FDN +L I L N
Sbjct: 69 LTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115
Score = 60.0 bits (146), Expect = 2e-10
Identities = 29/108 (26%), Positives = 48/108 (44%), Gaps = 26/108 (24%)
Query: 294 DLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYN 353
D + ++L NN I L PG+F+ L L L ++N+LT
Sbjct: 34 DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT----------------------- 70
Query: 354 KMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNN 401
+ + +F L +L L L +N ++SI R F +L +L + + NN
Sbjct: 71 ---AIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115
Score = 56.1 bits (136), Expect = 5e-09
Identities = 26/113 (23%), Positives = 49/113 (43%), Gaps = 27/113 (23%)
Query: 217 ARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNL 276
++C + +++ N S+PA I T L L
Sbjct: 8 SQCSCDQTLVNCQNIRLASVPA----------------GIPT-----------DKQRLWL 40
Query: 277 SVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNEL 329
+ N + + P +F+ +L+++Y +N + + G+F+ LTQL LDL++N L
Sbjct: 41 NNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHL 93
Score = 53.0 bits (128), Expect = 6e-08
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 491 LRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDI- 549
L L N I+ + GVF+ L L L SNK+ + G FD + L + L+ N+L I
Sbjct: 38 LWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIP 97
Query: 550 GGLFPKLPNL--VWL 562
G F L +L ++L
Sbjct: 98 RGAFDNLKSLTHIYL 112
Score = 51.9 bits (125), Expect = 1e-07
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 391 SNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNK 450
++ L ++NN++ ++E D L L L ++N+L I T L LN N
Sbjct: 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92
Query: 451 LTEIPK-VLRNLHSLKTLDLGDN 472
L IP+ NL SL + L +N
Sbjct: 93 LKSIPRGAFDNLKSLTHIYLYNN 115
Score = 48.8 bits (117), Expect = 2e-06
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 513 TILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDI-GGLFPKLPNLVWLNISENLL 569
L L +N+I K+E G FD+ NL + + N LT I G+F KL L L++++N L
Sbjct: 36 QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHL 93
Score = 42.6 bits (101), Expect = 2e-04
Identities = 38/152 (25%), Positives = 60/152 (39%), Gaps = 34/152 (22%)
Query: 577 IPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPHSVENLFLTNN 636
IP D Q L ++ NQI++L FD L L L+ +N
Sbjct: 31 IPTDKQRLWLNNNQITKLEP----------GVFD----HLVNLQ---------QLYFNSN 67
Query: 637 LISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHKNIPDFYIGENPFQCDCN 696
++ + F LT++DL N LK+I + A L S +I Y+ NP+ C+C
Sbjct: 68 KLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAF--DNLKSLTHI---YLYNNPWDCECR 122
Query: 697 -----MQWL-QSYSVNKERNKPNLVDLDTVTC 722
W+ S+ + + D D+ C
Sbjct: 123 DIMYLRNWVADHTSIVMRWDGKAVNDPDSAKC 154
Score = 41.9 bits (99), Expect = 3e-04
Identities = 25/113 (22%), Positives = 38/113 (33%), Gaps = 39/113 (34%)
Query: 151 STMSLDISHN--------VFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNK 202
L +++N VF D L +L+ L + N + +P +F L L+ L+L N
Sbjct: 34 DKQRLWLNNNQITKLEPGVF-DHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92
Query: 203 LSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGN 255
L S+P F L L +YL N
Sbjct: 93 LK------------------------------SIPRGAFDNLKSLTHIYLYNN 115
Score = 32.6 bits (75), Expect = 0.39
Identities = 24/76 (31%), Positives = 32/76 (42%), Gaps = 7/76 (9%)
Query: 102 SLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHNV 161
L PG F L++L+ L K+ + G F L +L L L N S I
Sbjct: 47 KLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND-NHLKS-----IPRGA 100
Query: 162 FTDELQSLESLDLSMN 177
F D L+SL + L N
Sbjct: 101 F-DNLKSLTHIYLYNN 115
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat,
signaling protein; HET: IHP; 1.80A {Arabidopsis
thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B*
3c6o_B* 3c6p_B*
Length = 594
Score = 67.6 bits (165), Expect = 1e-11
Identities = 66/430 (15%), Positives = 143/430 (33%), Gaps = 61/430 (14%)
Query: 114 LKDLSVEFCKIGNLSAGSF-RGLRKLKTLTLRTHNTDWSTMSLDISHNVFTDELQSLESL 172
L+++ ++ + + + + K L L + +ST L ++L+ L
Sbjct: 107 LEEIRLKRMVVTDDCLELIAKSFKNFKVLVL-SSCEGFSTDGL----AAIAATCRNLKEL 161
Query: 173 DLSMNSIWTLPD----AIFCPLQSLSYLNL--TQNKLSNVATFSFSNYDTARCGINLRVL 226
DL + + + SL LN+ +++S A RC NL+ L
Sbjct: 162 DLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLV----TRCP-NLKSL 216
Query: 227 DLSNNSFDSLPAEGFSRLSRLQELYLQG--NILTFLADHALD----GLNSLTVLNLSVNN 280
L+ A R +L+EL G + L G L L+ +
Sbjct: 217 KLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDA 276
Query: 281 LVNIPPELFNQSRDLKEVYLQNNSINVLA-PGIFNVLTQLIVLDLSNNELTEEWVNAATF 339
+ P +++ L + L ++ + +L L + + + + +
Sbjct: 277 VPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLA- 334
Query: 340 SGLHRLVVLNIAYNKMNKLDS----------SIFKDLYRLQVLHLENNQI-----ESIHR 384
S L L + ++ ++ S+ +L+ + Q+ +I R
Sbjct: 335 STCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIAR 394
Query: 385 NTFASLSNLHTLIMSNNKLKRIESNSLD--------SLTALSVLSLD----NNELEYIEE 432
N +++ I+ + LD L LSL + EYI
Sbjct: 395 N-RPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYI-- 451
Query: 433 NALKNSTSLQDFHLNGNKLTE--IPKVLRNLHSLKTLDLGD-NLITEINNLSLNSLHQLA 489
+ ++ + ++ + VL SL+ L++ D + + + L +
Sbjct: 452 --GTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMR 509
Query: 490 GLRLTENNIS 499
L ++ ++S
Sbjct: 510 SLWMSSCSVS 519
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 67.8 bits (165), Expect = 2e-11
Identities = 110/638 (17%), Positives = 182/638 (28%), Gaps = 221/638 (34%)
Query: 6 GSVFITVLISALGLVSASISKALRYQA--PDECKWFAVTSE-GAEIE--------VPSAA 54
GS+ +L+ AS + ++ P+ + FA E E V S
Sbjct: 14 GSLEHVLLVPTASFFIASQLQE-QFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLV 72
Query: 55 EPDQ-----EV-------------------ALVCKLRTINSEIENTNFSIIQAQYTVRLR 90
EP + +V AL KL N +I+ T R+
Sbjct: 73 EPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIM 132
Query: 91 IECGDMLFFQSSLSPGSFQTLIDLKDLSVEFCKI----GNLSAGSFRGLRKLKTLTLRTH 146
+ S+L F+ + + + + I GN F LR L T
Sbjct: 133 AKRPFDKKSNSAL----FRAV---GEGNAQLVAIFGGQGNTDDY-FEELRDLYQ-TYHVL 183
Query: 147 NTDWSTMSLDISHNVFTDELQSLESLDLSMNSI---------W-----TLPDAIF---CP 189
D + S L L L + W PD + P
Sbjct: 184 VGDL----IKFSAET----LSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIP 235
Query: 190 LQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQE 249
+ S + + Q ++Y ++L + P E S L
Sbjct: 236 I-SCPLIGVIQ----------LAHYVVT-----AKLLGFT-------PGELRSYLKGA-- 270
Query: 250 LYLQGNILT------------FL--ADHALD-----GLNSLTVLNLSVNNLVNIPPELFN 290
++T F A+ G+ + ++PP +
Sbjct: 271 TGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNT-----SLPPSILE 325
Query: 291 QSRDLKEVYLQNNSINVLAPGIFNV--LTQLIV---LDLSNNEL-TEEWVNAATFSGLHR 344
S + N+ V +P + ++ LTQ V ++ +N+ L + V + +G
Sbjct: 326 DSLE--------NNEGVPSP-MLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKN 376
Query: 345 LVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIES---IHRNTFA----SLSN--L-- 393
LVV S + LY L L L + S R F+ SN L
Sbjct: 377 LVV------------SGPPQSLYGL-NLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPV 423
Query: 394 ----HTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGN 449
H+ ++ A +++ D L + N
Sbjct: 424 ASPFHSHLLVP---------------ASDLINKD-----------LVK----NNVSFNAK 453
Query: 450 KLTEIP-------KVLRNLHSLKTLDLGDNLITE-IN---NLSLNSLHQLA-GLRLTENN 497
+ IP LR L + + D +I + + H L G
Sbjct: 454 DIQ-IPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFG------- 505
Query: 498 ISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSN 535
G L VLT N ++ + AGT D N +
Sbjct: 506 -----PGGASGLGVLTHRNKDGTGVRVIVAGTLDINPD 538
Score = 61.6 bits (149), Expect = 2e-09
Identities = 118/701 (16%), Positives = 205/701 (29%), Gaps = 271/701 (38%)
Query: 220 GINLRVLDLSNNSFD---SLPAEGFSRLSRLQELY----------------------LQG 254
+ R L LS+ S + +P F S+LQE + L G
Sbjct: 3 AYSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVG 62
Query: 255 NILTFLADHALDGLNSLT--VLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLA--- 309
L +++ VLNL + F YL+ N I+ LA
Sbjct: 63 KFLGYVSSLVEPSKVGQFDQVLNLCLTE--------FENC------YLEGNDIHALAAKL 108
Query: 310 ----PGIFNVLTQLI-----VLDLSNNELTEE----WVNAATFSGLHRLVVL------NI 350
+LI ++ ++ A G +LV +
Sbjct: 109 LQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVG-EGNAQLVAIFGGQGNTD 167
Query: 351 AYNKMNKLDSSIFKDL------YRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLK 404
Y F++L Y + V L I+ L LI + +
Sbjct: 168 DY----------FEELRDLYQTYHVLVGDL----IKFSA-------ETLSELIRTTLDAE 206
Query: 405 RIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSL 464
++ + L+ L L EN ++T +D+ L IP + S
Sbjct: 207 KVFTQGLNILEWL--------------ENP--SNTPDKDY------LLSIP-I-----SC 238
Query: 465 KTLDLGDNLITEINNLSLNSLHQLA-------GLRLTENNISNISKGVFEKLS-VLTILN 516
LI + QLA L T + + KG ++T +
Sbjct: 239 P-------LIG---------VIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVA 282
Query: 517 LASNKIQKVEAGT---FDNNSNLVAIRLDGNYLTDIG----GLFPKL---PNLVW----- 561
+A + F + AI + L IG +P P+++
Sbjct: 283 IAE-------TDSWESFFVSVRK-AITV----LFFIGVRCYEAYPNTSLPPSILEDSLEN 330
Query: 562 --------LNISENLLEWFDYALIPADLQWLDIHGNQISELGNYFEIESQLRLTYFDASS 613
L+IS L +Q + +++ ++ Q+ ++ + +
Sbjct: 331 NEGVPSPMLSIS---------NLTQEQVQ------DYVNKTNSHLPAGKQVEISLVNGAK 375
Query: 614 NKLTELTGNAIPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRIS 673
N + ++G P S+ L N + K + P+ ++Q+ RI
Sbjct: 376 NLV--VSGP--PQSLYGL---NLTLRKAK------APS------------GLDQS--RI- 407
Query: 674 PLPSHKNIPDFY-----IGENPFQCDCNMQWLQSYSVNKERNKPNLVDLDTVTCKLLYNR 728
P K F + PF L S +L++ D V + +N
Sbjct: 408 PFSERK--LKFSNRFLPVAS-PFHSH----LLVPAS--------DLINKDLVKNNVSFNA 452
Query: 729 ANPAILLKEAHSNQFLCEYETNCAPLCHCCDFDACDCEMTCPNNCTCYHDVSWEAN---- 784
+ I + + L + + DC + P V WE
Sbjct: 453 KDIQIPVYDTFDGSDLRVLSGSISE-------RIVDCIIRLP--------VKWETTTQFK 497
Query: 785 ---VIDCSTGGYDN--QLPPRIPMDATELYLDGNRIPVVGS 820
++D GG L R D T G R+ V G+
Sbjct: 498 ATHILDFGPGGASGLGVLTHRN-KDGT-----GVRVIVAGT 532
Score = 47.7 bits (113), Expect = 2e-05
Identities = 100/538 (18%), Positives = 143/538 (26%), Gaps = 242/538 (44%)
Query: 515 LNLASNKIQKVEAGTFDNNSNLVAIRLDGNYL--TDIGGLFPKLPNLVWLNISE--NLLE 570
L S+ ++ + G FD NL + YL DI L KL + + L++
Sbjct: 65 LGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIK 124
Query: 571 WFDYALIPADLQWLDIH-------------------GNQISELGN---YFEIESQLRLTY 608
+ A I A + G Q GN YFE E LR Y
Sbjct: 125 NYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQ----GNTDDYFE-E--LRDLY 177
Query: 609 ----------FDASSNKLTELTGNAIPHSVENLF---------LTN-------------- 635
S+ L+EL E +F L N
Sbjct: 178 QTYHVLVGDLIKFSAETLSELI--RTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIP 235
Query: 636 ---NLISKVQ--PYTFFMK-----PNLTRVDLVG--NRLKNINQTALRISPLPS----HK 679
LI +Q Y K P R L G + + TA+ I+ S
Sbjct: 236 ISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGL-VTAVAIAETDSWESFFV 294
Query: 680 NIPD-----FYIGENPFQC--------------------------------DCNMQWLQS 702
++ F+IG +C + + +Q
Sbjct: 295 SVRKAITVLFFIG---VRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQD 351
Query: 703 Y--SVNKE-----------RNKP-NLV------DLDTVTCKLLYNRANPA-----ILL-- 735
Y N N NLV L + L +A I
Sbjct: 352 YVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSE 411
Query: 736 -KEAHSNQFLCEYETNCAPLCHCCDFDACDCEMTCPNNCTCYH----------------- 777
K SN+FL P + P +H
Sbjct: 412 RKLKFSNRFL--------P-------------VASP-----FHSHLLVPASDLINKDLVK 445
Query: 778 -DVSWEAN-----VIDCSTG----GYDNQLPPRI-------PMD--------ATELYLD- 811
+VS+ A V D G + RI P+ AT + LD
Sbjct: 446 NNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHI-LDF 504
Query: 812 GNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEIRGY 869
G P G S +G L T NK G++ ++ LD N + G+
Sbjct: 505 G---P--GGASGLG--VL-----------THRNKDGTGVRVIVAGTLDINPDDDY-GF 543
Score = 47.0 bits (111), Expect = 5e-05
Identities = 115/709 (16%), Positives = 198/709 (27%), Gaps = 287/709 (40%)
Query: 587 HGN-QISEL---GNYFEIESQLRLTYFDASSNKLTE-LTGNAIPHSVENL---FLTNNLI 638
HG+ + L ++F I SQL+ F+ + TE + P + L FL +
Sbjct: 13 HGSLEHVLLVPTASFF-IASQLQEQ-FNKILPEPTEGFAADDEPTTPAELVGKFL-GYVS 69
Query: 639 SKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHKNIPDF---YIGENPFQCDC 695
S V+P ++ L L +I + EN
Sbjct: 70 SLVEP-----SKVGQFDQVLNLCLTEFENCYLE------GNDIHALAAKLLQENDTTLVK 118
Query: 696 NMQWLQSY-SVNKERNKPNLVDLDTVTCKLLYNRANPAILLKEAHSNQFLCEYETNCAPL 754
+ +++Y + +P +++ + + L + A L
Sbjct: 119 TKELIKNYITARIMAKRP-------------FDKKSNSALFRAVGEGN---------AQL 156
Query: 755 CHCCDFDACDCEMTCPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELYLDGNR 814
F GG Q T+ Y +
Sbjct: 157 VAI--F------------------------------GG---Q-------GNTDDYFE--- 171
Query: 815 IPVVGSHSFIGRKKLQILFLNS-SHVETIHNKTFNGLKELIILRLDDNRLTEIRGYEFER 873
+L+ L+ V + + L ELI LD ++ +G
Sbjct: 172 -------------ELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFT-QGLNILE 217
Query: 874 -LENLR----ELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITS----FAVWHLSSQIQ 924
LEN + YL I S + V+QL H +T+ F L S ++
Sbjct: 218 WLENPSNTPDKDYLLSIPI---------SCPLIGVIQLAHYVVTAKLLGFTPGELRSYLK 268
Query: 925 SITL------------TSNPWSCDCDFTEKFRDYLQRSRSSVHDISQIRCMTGSEVGFTI 972
T ++ W F R + V F I
Sbjct: 269 GATGHSQGLVTAVAIAETDSWE---SFFVSVRKAI-------------------TVLFFI 306
Query: 973 -MRT--VIPSCNVVSTNVSSHSNNNNNTTTTTTTTTIFIPEHSPMNGSFILS-------E 1022
+R P+ ++ + + NN P SPM LS +
Sbjct: 307 GVRCYEAYPNTSLPPSILEDSLENNEGV-----------P--SPM-----LSISNLTQEQ 348
Query: 1023 LQ----------PQQDYVFLLIILVSA--SFV-------LVLLLILI------------- 1050
+Q P V I LV+ + V L L + +
Sbjct: 349 VQDYVNKTNSHLPAGKQVE--ISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSR 406
Query: 1051 IIYRQEMRVWFHSRFGVRL-----F---YKSSEIEMDDRDKLFDAFVSYSSKDEAFVAEE 1102
I + + ++ F +RF L F ++ ++D + +F A++
Sbjct: 407 IPFSER-KLKFSNRF---LPVASPFHSHLLVPASDLINKD--------LVKNNVSFNAKD 454
Query: 1103 LA-PIL--ENGDPAYKLCLHYREFPVGGYIGDTIVQAVESSRRTIMVLSENFIKSEWCRY 1159
+ P+ +G R + G I + IV I+ L W
Sbjct: 455 IQIPVYDTFDGS-------DLRV--LSGSISERIVDC-------IIRLPVK-----WETT 493
Query: 1160 EFKSAHHQVL---RGK--------KRLI------VILLGEVPQKDLDPD 1191
A H +L G R VI+ G + D++PD
Sbjct: 494 TQFKATH-ILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTL---DINPD 538
Score = 40.8 bits (95), Expect = 0.003
Identities = 45/299 (15%), Positives = 84/299 (28%), Gaps = 117/299 (39%)
Query: 115 KDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHNVFTDELQSLESLDL 174
+L++ F G +G R +R ++S M + + + + ++
Sbjct: 1670 VNLTIHF--------GGEKGKR------IRE---NYSAMIFETIVDGKLKTEKIFKEINE 1712
Query: 175 SMNS-IWTLPDAIFCPLQSLSYLNLTQN-----KLSNVATFSFSNYDTARCGINLRVLDL 228
S + + L+ TQ L A F L
Sbjct: 1713 HSTSYTFRSEKGL---------LSATQFTQPALTLMEKAAF--------------EDL-K 1748
Query: 229 SNNSFD--------SL--------PAEGFS-----RLSRLQELYLQGNILTFLA------ 261
S SL A+ S + ++ +G +
Sbjct: 1749 SKGLIPADATFAGHSLGEYAALASLADVMSIESLVEV-----VFYRGMTMQVAVPRDELG 1803
Query: 262 --DHALDGLN-SLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQ 318
++ + +N + S L + + ++ L E+ +N +NV Q
Sbjct: 1804 RSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEI------VN------YNVENQ 1851
Query: 319 LIVLDLSNNELTEEWVNAATFSGLHRLV-VLNIAYNKMNKLDSSIFKDLYRLQV-LHLE 375
V A L + VLN + K+ K+ D+ LQ L LE
Sbjct: 1852 QYVA-------------AGDLRALDTVTNVLN--FIKLQKI------DIIELQKSLSLE 1889
Score = 37.0 bits (85), Expect = 0.058
Identities = 29/177 (16%), Positives = 51/177 (28%), Gaps = 58/177 (32%)
Query: 16 ALGLVSASISKALRYQAP-DECKWFAVTSEGAEIEVPSAAEPDQE-VALVCKLRTINSEI 73
AL L+ + + L+ + FA S G E AL +++
Sbjct: 1735 ALTLMEKAAFEDLKSKGLIPADATFAGHSLG-------------EYAALASL-----ADV 1776
Query: 74 ENTNFSIIQAQYTVRLR----------IECGDMLFFQSSLSPGSFQTLIDLKDLSV---- 119
SI V R E G + +++PG + L
Sbjct: 1777 ----MSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVER 1832
Query: 120 ------EFCKIGNL--------SAGSFRGLRKLKTL--TLRTHNTDWS----TMSLD 156
+I N +AG R L + + ++ D ++SL+
Sbjct: 1833 VGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLE 1889
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral
signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A
{Homo sapiens}
Length = 372
Score = 63.6 bits (155), Expect = 1e-10
Identities = 62/383 (16%), Positives = 113/383 (29%), Gaps = 73/383 (19%)
Query: 174 LSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSF 233
L + + CP+++L L Q + + ++ +
Sbjct: 6 LLSAHNRAVLAQLGCPIKNLDALENAQAIKKKLGKLGRQVLPPSEL-LDHLFFHYEFQN- 63
Query: 234 DSLPAEGFSRLSRLQELYLQGNILT-----FLADHALDGLNSLTVLNLSVNNLVNIPPE- 287
AE LS L++L L G +T +A G ++L +NL+ + P
Sbjct: 64 QRFSAEV---LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQ---LDPAG 117
Query: 288 ---LFNQSRDLKEVYLQNNSI-----NVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATF 339
L +++ LQ NS+ L + + Q+ L LSNN LT
Sbjct: 118 LRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAA------- 170
Query: 340 SGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASL----SNLHT 395
G+ L + L L + + A+ L
Sbjct: 171 -GVAVL--------------MEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQE 215
Query: 396 LIMSNNKLKRIE----SNSLDSLTALSVLSLDNNELEYIEENAL-------KNSTSLQDF 444
L ++ N + + +L +L L NEL L + +
Sbjct: 216 LNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVS 275
Query: 445 HLNGNKLTE-----IPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNIS 499
G ++E + +V RNL+S + +L + +L + L R +
Sbjct: 276 LTEGTAVSEYWSVILSEVQRNLNSWDRARVQRHLELLLRDLEDSRGATLNPWRKAQLLRV 335
Query: 500 NISKGVFEKLSVLTILNLASNKI 522
+ L
Sbjct: 336 E---------GEVRALLEQLGSS 349
Score = 63.6 bits (155), Expect = 1e-10
Identities = 56/331 (16%), Positives = 98/331 (29%), Gaps = 64/331 (19%)
Query: 190 LQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSR-LSRLQ 248
L SL LNL +++ V + L ++L++ D R +
Sbjct: 71 LSSLRQLNLAGVRMTPVKCTVVA-AVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRAR 129
Query: 249 ELYLQGNILT-----FLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNN 303
+L LQ N L L D L +T L LS N L
Sbjct: 130 KLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPL-------------------TAA 170
Query: 304 SINVLAPGIFNVLTQLIVLDLSNNELTEEWVN--AATFSGLHRLVVLNIAYNKMN----K 357
+ VL G+ T + L L + L +E + AA +L LN+AYN
Sbjct: 171 GVAVLMEGL-AGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL 229
Query: 358 LDSSIFKDLYRLQVLHLENNQIE-------SIHRNTFASLSNLHTLIMSNNKLKRIESNS 410
+ ++ L++LHL N++ + + + + S
Sbjct: 230 ALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAV------S 283
Query: 411 LDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLT-----EIPKVLRNLHSLK 465
LS + + N + ++ L L ++ ++LR ++
Sbjct: 284 EYWSVILSEVQRNLNSWD---RARVQRHLELLLRDLEDSRGATLNPWRKAQLLRVEGEVR 340
Query: 466 TLDLGDNLITEI----------NNLSLNSLH 486
L + H
Sbjct: 341 ALLEQLGSSGSPSGSWSHPQFEKGAGHHHHH 371
Score = 63.2 bits (154), Expect = 2e-10
Identities = 38/240 (15%), Positives = 76/240 (31%), Gaps = 35/240 (14%)
Query: 372 LHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIE 431
L N + + +L L KL ++ L L L + E +
Sbjct: 7 LSAHNRAVLAQLGCPIKNLDALENAQAIKKKLGKLGRQVLPPSELLDHLFF-HYEFQNQR 65
Query: 432 ENALKNSTSLQDFHLNGNKLTE-----IPKVLR-NLHSLKTLDLGDNLITEINNLSL-NS 484
+ + +SL+ +L G ++T + VL H+L ++L + +L
Sbjct: 66 F-SAEVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPV 124
Query: 485 LHQLAGLRLTENNISN-----ISKGVFEKLSVLTILNLASNKIQKVEAGTF----DNNSN 535
+ L L N++ + + +T L L++N + N++
Sbjct: 125 FLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTS 184
Query: 536 LVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELG 595
+ + L L D G ++ L LQ L++ N +
Sbjct: 185 VTHLSLLHTGLGDEGLEL----------LAAQLDR-------NRQLQELNVAYNGAGDTA 227
Score = 43.6 bits (103), Expect = 3e-04
Identities = 34/242 (14%), Positives = 72/242 (29%), Gaps = 34/242 (14%)
Query: 111 LIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHNVFTDE----- 165
+ + L ++ +G + R L + T L +S+N T
Sbjct: 125 FLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITT---------LRLSNNPLTAAGVAVL 175
Query: 166 ------LQSLESLDLSMNSI-----WTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNY 214
S+ L L + L + + L LN+ N + A + +
Sbjct: 176 MEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRN-RQLQELNVAYNGAGDTAALALARA 234
Query: 215 DTARCGINLRVLDLSNNSFDS----LPAEGFSRLSRLQELYLQGNILTFLADHALDGLNS 270
+L +L L N S + + + + T ++++ L+
Sbjct: 235 AREHP--SLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSE 292
Query: 271 LTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELT 330
+ NL+ + + L RDL++ + A + V ++ L
Sbjct: 293 V-QRNLNSWDRARVQRHLELLLRDLEDSRGATLNPWRKAQLL-RVEGEVRALLEQLGSSG 350
Query: 331 EE 332
Sbjct: 351 SP 352
Score = 33.2 bits (76), Expect = 0.58
Identities = 15/78 (19%), Positives = 26/78 (33%), Gaps = 8/78 (10%)
Query: 851 KELIILRLDDNRLTEIRGYE--FERLENLRELYLQYNKI-----IYISNRTFLSLTHLKV 903
L + L +L G R+L LQ N + + + +
Sbjct: 101 HALDEVNLASCQLDP-AGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITT 159
Query: 904 LQLDHNRITSFAVWHLSS 921
L+L +N +T+ V L
Sbjct: 160 LRLSNNPLTAAGVAVLME 177
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin
ligase, SCF, protein binding; HET: OGK; 2.80A
{Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Length = 592
Score = 62.3 bits (151), Expect = 6e-10
Identities = 64/426 (15%), Positives = 133/426 (31%), Gaps = 57/426 (13%)
Query: 114 LKDLSVEFC-KIGNLSAGSF-RGLRKLKTLTL-RTHNTDWSTMSLDISHNVFTDELQSLE 170
L+ L ++ C S RK+KTL + + ++ L + SLE
Sbjct: 140 LETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWL----HELAQHNTSLE 195
Query: 171 SLDLSMNSIWTLPD----AIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVL 226
L+ M + I +SL + + ++ + F + NL
Sbjct: 196 VLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGF-------FKAAANLEEF 248
Query: 227 DLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGL----NSLTVLNLSVNNLV 282
+ + D E + L ++L G L+++ + + L + L+L L
Sbjct: 249 CGGSLNEDIGMPEKYMNLVFPRKLCRLG--LSYMGPNEMPILFPFAAQIRKLDLLYALLE 306
Query: 283 -NIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSG 341
L + +L+ + +N + + QL L + + +
Sbjct: 307 TEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVS 366
Query: 342 LHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNN 401
L+ ++ + L+ + + + I T SL ++
Sbjct: 367 QRGLI--------------ALAQGCQELEYMAVYVSDI------TNESLE---SIGTYLK 403
Query: 402 KLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLT--EIPKVLR 459
L LD ++ L LD N + + K F+L LT + + +
Sbjct: 404 NLCDFRLVLLDREERITDLPLD-NGVRSLLIG-CKKLRRF-AFYLRQGGLTDLGLSYIGQ 460
Query: 460 NLHSLKTLDLGDNLITE--INNLSLNSLHQLAGLRLTENNISNIS-KGVFEKLSVLTILN 516
+++ + LG ++ + L L + S + KL L L
Sbjct: 461 YSPNVRWMLLGYVGESDEGLMEF-SRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLW 519
Query: 517 LASNKI 522
+ +
Sbjct: 520 VQGYRA 525
Score = 60.7 bits (147), Expect = 2e-09
Identities = 50/373 (13%), Positives = 118/373 (31%), Gaps = 37/373 (9%)
Query: 220 GINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVN 279
+ ++ + R L+ L L+G A L N + V
Sbjct: 49 SETREHVTMALCYTATPDRL-SRRFPNLRSLKLKGK--PRAAMFNLIPENWGGYVTPWVT 105
Query: 280 NLVNIPPELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSN-NELTEEWVNAAT 338
+ N +L +S + + + + ++ LA L L L + T + + +
Sbjct: 106 EISNNLRQL--KSVHFRRMIVSDLDLDRLAKARA---DDLETLKLDKCSGFTTDGLLSIV 160
Query: 339 FSGLHRLVVLNIAYNKMNKLD----SSIFKDLYRLQVLHLENNQIESIHRNTFASL---- 390
+ ++ L + + ++ D + + L+VL+ + I ++
Sbjct: 161 -THCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNC 219
Query: 391 SNLHTLIMSNNKLKRIES--NSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNG 448
+L ++ + + ++ + + +L SL+ + + L L L+
Sbjct: 220 RSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSY 279
Query: 449 NKLTEIPKVLRNLHSLKTLDLGD-NLITEINNLSLNSLHQLAGLRLTENNISNIS-KGVF 506
E+P + ++ LDL L TE + + L L N I + + +
Sbjct: 280 MGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLA 338
Query: 507 EKLSVLTILNLASNKIQKVEAGTFD------------NNSNLVAIRLDGNYLTDIG--GL 552
+ L L + ++ L + + + +T+ +
Sbjct: 339 QYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESI 398
Query: 553 FPKLPNLVWLNIS 565
L NL +
Sbjct: 399 GTYLKNLCDFRLV 411
Score = 49.2 bits (117), Expect = 7e-06
Identities = 35/315 (11%), Positives = 85/315 (26%), Gaps = 42/315 (13%)
Query: 109 QTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWSTMSLDISHNVFTDELQS 168
L + S+ + RKL L L + L
Sbjct: 243 ANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLS-YMGPNEMPIL-------FPFAAQ 294
Query: 169 LESLDLSMNSIWTLP-DAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLD 227
+ LDL + T + +L L N + + A+ L+ L
Sbjct: 295 IRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVL-----AQYCKQLKRLR 348
Query: 228 LSNNSFDSLPAEGFSRLS------------RLQELYLQGNILTFLADHAL-DGLNSLTVL 274
+ + + + +S L+ + + + +T + ++ L +L
Sbjct: 349 IERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDF 408
Query: 275 NL-SVNNLVNIPPELFNQS--------RDLKEVYLQNNSINVLAPGIFNV---LTQLIVL 322
L ++ I + + L+ + G+ + + +
Sbjct: 409 RLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWM 468
Query: 323 DLSNNELTEEWVNAATFSGLHRLVVLNIAYNKM-NKLDSSIFKDLYRLQVLHLENNQIES 381
L ++E + G L L + + ++ L L+ L ++ +
Sbjct: 469 LLGYVGESDEGL-MEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASM 527
Query: 382 IHRNTFASLSNLHTL 396
++ +
Sbjct: 528 TGQDLMQMARPYWNI 542
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed
beta-alpha superhelix, leucine-rich repeat structural
genomics; HET: MSE PG4; 1.99A {Bacteroides
thetaiotaomicron}
Length = 329
Score = 52.5 bits (126), Expect = 4e-07
Identities = 50/312 (16%), Positives = 94/312 (30%), Gaps = 17/312 (5%)
Query: 240 GFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPELFNQSRDLKEVY 299
+ + L L G + H D SL VL++S + + +Y
Sbjct: 20 TEEEANSITHLTLTGKLNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIY 79
Query: 300 LQN----NSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKM 355
+ N + + + G+ L + LS + + A F G L + I
Sbjct: 80 MANFVPAYAFSNVVNGVTKGKQTLEKVILSEK-IKN--IEDAAFKGCDNLKICQIRKKTA 136
Query: 356 NKLDSSIFKDLYRLQVLHLENNQI----ESIHRNTFASLSNLHTLIMSNNKLKRIESNSL 411
L D + L ++ F L T I + ++E +
Sbjct: 137 PNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGA-MGKLEDEIM 195
Query: 412 D---SLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPK-VLRNLHSLKTL 467
++ L+++ + +L ++ T IP L +
Sbjct: 196 KAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKI 255
Query: 468 DLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEA 527
L N + I ++ +LAG +++ I G F L + +KI +
Sbjct: 256 KLPHN-LKTIGQRVFSNCGRLAGTLELPASVTAIEFGAFMGCDNLRYVLATGDKITTLGD 314
Query: 528 GTFDNNSNLVAI 539
F N I
Sbjct: 315 ELFGNGVPSKLI 326
Score = 51.3 bits (123), Expect = 1e-06
Identities = 44/292 (15%), Positives = 87/292 (29%), Gaps = 14/292 (4%)
Query: 156 DISHNVFTDELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYD 215
D H DE SL+ LD+S I Y+ + + + + N
Sbjct: 40 DFRH--LRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFS-NVVNGV 96
Query: 216 TARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLN 275
T L + LS ++ F L+ ++ L AL + +
Sbjct: 97 TKGK-QTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIP 154
Query: 276 LSVNNLVNIPPEL----FNQSRDLKEVYLQNNSINVLAPGIFNVLTQL--IVLDLSNNEL 329
L ++ F + L+ ++ L I Q I +L
Sbjct: 155 LGSSDAYRFKNRWEHFAFIEGEPLETTIQ-VGAMGKLEDEIMKAGLQPRDINFLTIEGKL 213
Query: 330 TEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFAS 389
+ LV L+I+ + F L + L +N +++I + F++
Sbjct: 214 DN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSN 271
Query: 390 LSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSL 441
L + + IE + L + +++ + + N
Sbjct: 272 CGRLAGTLELPASVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPS 323
Score = 50.5 bits (121), Expect = 2e-06
Identities = 44/309 (14%), Positives = 104/309 (33%), Gaps = 20/309 (6%)
Query: 254 GNILTFLADHALDGLNSLTVL-NLSVNNLVNIPPELFNQSRDLKEVYLQNNSINVLAPGI 312
G +++ + + + + LT+ L+ + ++ E + LK + + N I + +
Sbjct: 13 GTLISMMTEEEANSITHLTLTGKLNAEDFRHLRDEFPS----LKVLDISNAEIKMYSGKA 68
Query: 313 FNVLTQLIVLDLSNNELTEEWVN--AATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQ 370
+ ++N + N G L + + K+ ++ + FK L+
Sbjct: 69 GTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVIL-SEKIKNIEDAAFKGCDNLK 127
Query: 371 VLHLENNQIESIHRNTFASLSNL----HTLIMSNNKLKRIESNSLDSLTALSVLSLDNNE 426
+ + ++ A + R E + L
Sbjct: 128 ICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGA- 186
Query: 427 LEYIEENALKNSTSLQDFHLNGNKLTEIPK-----VLRNLHSLKTLDLGDNLITEINNLS 481
+ +E+ +K +D + ++ + + +L +LD+ T I + +
Sbjct: 187 MGKLEDEIMKAGLQPRDINFL-TIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFT 245
Query: 482 LNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRL 541
L ++L +N+ I + VF L + +E G F NL +
Sbjct: 246 FAQKKYLLKIKLP-HNLKTIGQRVFSNCGRLAGTLELPASVTAIEFGAFMGCDNLRYVLA 304
Query: 542 DGNYLTDIG 550
G+ +T +G
Sbjct: 305 TGDKITTLG 313
Score = 43.2 bits (102), Expect = 4e-04
Identities = 43/305 (14%), Positives = 89/305 (29%), Gaps = 59/305 (19%)
Query: 389 SLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEY----IEENALKNSTSLQDF 444
+L L +SN ++K + + + N Y + K +L+
Sbjct: 47 EFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKV 106
Query: 445 HLNGNKLTEI-PKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNI----S 499
L K+ I + +LK + + +L + L ++ +
Sbjct: 107 IL-SEKIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKN 165
Query: 500 NISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNL 559
F + L + K+E I N+LT G L L
Sbjct: 166 RWEHFAFIEGEPLETTIQ-VGAMGKLEDEIMKAGLQPRDI----NFLTIEGKLDNADFKL 220
Query: 560 VWLNISENLLEWFDYALIPADLQWLDIHGNQISELGNY-FEIESQLRLTYFDASSNKLTE 618
+ + +L LDI + + ++ F L +
Sbjct: 221 IRDYMP--------------NLVSLDISKTNATTIPDFTFA------------QKKYLLK 254
Query: 619 LTGNAIPHSV----ENLF-----LTNNL-----ISKVQPYTFFMKPNLTRVDLVGNRLKN 664
+ +PH++ + +F L L ++ ++ F NL V G+++
Sbjct: 255 IK---LPHNLKTIGQRVFSNCGRLAGTLELPASVTAIEFGAFMGCDNLRYVLATGDKITT 311
Query: 665 INQTA 669
+
Sbjct: 312 LGDEL 316
Score = 34.8 bits (80), Expect = 0.18
Identities = 38/234 (16%), Positives = 74/234 (31%), Gaps = 12/234 (5%)
Query: 168 SLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNKLSNVATFSFSNYDTARCGINLRVLD 227
+LE + LS I + DA F +L + + N+ + ++ TA I L D
Sbjct: 102 TLEKVILS-EKIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIF-IPLGSSD 159
Query: 228 LSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNLVNIPPE 287
+ F L+ G + L D + +N + +
Sbjct: 160 AYRFK-NRWEHFAFIEGEPLETTIQVGAM-GKLEDEIMKAGLQPRDINF-LTIEGKLDNA 216
Query: 288 LFNQSRD----LKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSGLH 343
F RD L + + + + F L+ + L +N L + FS
Sbjct: 217 DFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKT--IGQRVFSNCG 273
Query: 344 RLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLI 397
RL + ++ F L+ + ++I ++ F + +
Sbjct: 274 RLAGTLELPASVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327
Score = 30.9 bits (70), Expect = 2.5
Identities = 33/195 (16%), Positives = 64/195 (32%), Gaps = 32/195 (16%)
Query: 130 GSFRGLRKLKTLTLRTHNTDWSTMSLDISHNVFTDELQSLESLDLSMNSIWTLPDAIFCP 189
+ + + ++D H F E + LE+ ++ L D I
Sbjct: 140 LPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFI-EGEPLETTIQV-GAMGKLEDEIMKA 197
Query: 190 LQSLSYLNL--TQNKLSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRL 247
+N + KL N +Y NL LD+S + ++P F++ L
Sbjct: 198 GLQPRDINFLTIEGKLDNADFKLIRDYMP-----NLVSLDISKTNATTIPDFTFAQKKYL 252
Query: 248 QELY------------------LQGNI-----LTFLADHALDGLNSLTVLNLSVNNLVNI 284
++ L G + +T + A G ++L + + + + +
Sbjct: 253 LKIKLPHNLKTIGQRVFSNCGRLAGTLELPASVTAIEFGAFMGCDNLRYVLATGDKITTL 312
Query: 285 PPELFNQSRDLKEVY 299
ELF K +Y
Sbjct: 313 GDELFGNGVPSKLIY 327
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor,
GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB:
3rez_A*
Length = 130
Score = 47.1 bits (112), Expect = 2e-06
Identities = 22/137 (16%), Positives = 35/137 (25%), Gaps = 43/137 (31%)
Query: 624 IPHSVENLFLTNNLISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHKNIPD 683
P L LT N ++ + P P L L
Sbjct: 29 FPVDTTELVLTGNNLTALPPGLLDALPALRTAHL-------------------------- 62
Query: 684 FYIGENPFQCDCNMQWLQSYSVNKERNKPNLVDLDTVTCKLLYNRANPAIL----LKEAH 739
G NP++CDC + L+++ +P + C P L L
Sbjct: 63 ---GANPWRCDCRLVPLRAWL----AGRPERAPYRDLRC------VAPPALRGRLLPYLA 109
Query: 740 SNQFLCEYETNCAPLCH 756
++ H
Sbjct: 110 EDELRAACAPGPLSSHH 126
Score = 44.4 bits (105), Expect = 2e-05
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 222 NLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGN 255
+ L L+ N+ +LP L L+ +L N
Sbjct: 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65
Score = 43.3 bits (102), Expect = 6e-05
Identities = 17/90 (18%), Positives = 25/90 (27%), Gaps = 24/90 (26%)
Query: 875 ENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSSQIQSITLTSNPWS 934
+ EL L N + + +L L+ L NPW
Sbjct: 31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGA----------------------NPWR 68
Query: 935 CDCDFTEKFRDYLQRSRSSVHDISQIRCMT 964
CDC R +L +RC+
Sbjct: 69 CDCRLV-PLRAWLAGRPERA-PYRDLRCVA 96
Score = 42.9 bits (101), Expect = 7e-05
Identities = 9/33 (27%), Positives = 11/33 (33%)
Query: 512 LTILNLASNKIQKVEAGTFDNNSNLVAIRLDGN 544
T L L N + + G D L L N
Sbjct: 33 TTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65
Score = 42.5 bits (100), Expect = 9e-05
Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 7/69 (10%)
Query: 769 CPNNCTCYHDVSWEANVIDCSTGGYDNQ-LPPRIPMDATELYLDGNRIPVVGSHSFIGRK 827
CP C+C ++DC G LP P+D TEL L GN + +
Sbjct: 2 CPAPCSCA------GTLVDCGRRGLTWASLPTAFPVDTTELVLTGNNLTALPPGLLDALP 55
Query: 828 KLQILFLNS 836
L+ L +
Sbjct: 56 ALRTAHLGA 64
Score = 39.4 bits (92), Expect = 0.001
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 294 DLKEVYLQNNSINVLAPGIFNVLTQLIVLDLSNN 327
D E+ L N++ L PG+ + L L L N
Sbjct: 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65
Score = 39.0 bits (91), Expect = 0.002
Identities = 18/47 (38%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Query: 233 FDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVN 279
+ SLP F EL L GN LT L LD L +L +L N
Sbjct: 22 WASLPT-AFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65
Score = 38.2 bits (89), Expect = 0.003
Identities = 7/33 (21%), Positives = 12/33 (36%)
Query: 369 LQVLHLENNQIESIHRNTFASLSNLHTLIMSNN 401
L L N + ++ +L L T + N
Sbjct: 33 TTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65
Score = 37.9 bits (88), Expect = 0.004
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 270 SLTVLNLSVNNLVNIPPELFNQSRDLKEVYLQNN 303
T L L+ NNL +PP L + L+ +L N
Sbjct: 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65
Score = 36.3 bits (84), Expect = 0.014
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 439 TSLQDFHLNGNKLTEIPK-VLRNLHSLKTLDLGDN 472
+ L GN LT +P +L L +L+T LG N
Sbjct: 31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65
Score = 35.2 bits (81), Expect = 0.036
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 168 SLESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQN 201
L L+ N++ LP + L +L +L N
Sbjct: 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65
Score = 34.0 bits (78), Expect = 0.078
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 491 LRLTENNISNISKGVFEKLSVLTILNLASN 520
L LT NN++ + G+ + L L +L +N
Sbjct: 36 LVLTGNNLTALPPGLLDALPALRTAHLGAN 65
Score = 32.1 bits (73), Expect = 0.41
Identities = 8/34 (23%), Positives = 12/34 (35%)
Query: 345 LVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQ 378
L + N + L + L L+ HL N
Sbjct: 33 TTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66
Score = 31.7 bits (72), Expect = 0.49
Identities = 9/35 (25%), Positives = 13/35 (37%)
Query: 415 TALSVLSLDNNELEYIEENALKNSTSLQDFHLNGN 449
+ L L N L + L +L+ HL N
Sbjct: 31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65
Score = 29.0 bits (65), Expect = 4.4
Identities = 9/34 (26%), Positives = 13/34 (38%)
Query: 463 SLKTLDLGDNLITEINNLSLNSLHQLAGLRLTEN 496
L L N +T + L++L L L N
Sbjct: 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport
element (CTE), RNA recogni motif (RRM); HET: GTP CCC;
2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A
1fo1_A
Length = 267
Score = 49.2 bits (117), Expect = 3e-06
Identities = 32/152 (21%), Positives = 48/152 (31%), Gaps = 29/152 (19%)
Query: 321 VLDLSNNELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIE 380
LDL + V L+R + M I +++ L L+L NN++
Sbjct: 131 ALDLKGLRSDPDLVAQNIDVVLNRR-------SCMAATLRIIEENIPELLSLNLSNNRLY 183
Query: 381 SIH--RNTFASLSNLHTLIMSNNKLKRIESNSLDSLTA--LSVLSLDNNELEYIEENALK 436
+ + NL L +S N+LK LD + L L LD N L +
Sbjct: 184 RLDDMSSIVQKAPNLKILNLSGNELKSER--ELDKIKGLKLEELWLDGNSLCDTFRDQST 241
Query: 437 NSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLD 468
I + L LD
Sbjct: 242 Y----------------ISAIRERFPKLLRLD 257
Score = 43.4 bits (102), Expect = 2e-04
Identities = 28/113 (24%), Positives = 50/113 (44%), Gaps = 12/113 (10%)
Query: 151 STMSLDISHNVFTDELQSLESLDLSMNSI---WTLPDAIFCPLQSLSYLNLTQNKLSNVA 207
S +LD+ + +D +++D+ +N I + L LNL+ N+L +
Sbjct: 128 SQQALDLK-GLRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLD 186
Query: 208 TFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLS--RLQELYLQGNILT 258
S + NL++L+LS N S ++ +L+EL+L GN L
Sbjct: 187 DMS----SIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLC 233
Score = 43.1 bits (101), Expect = 3e-04
Identities = 24/128 (18%), Positives = 45/128 (35%), Gaps = 15/128 (11%)
Query: 218 RCGINLRVLDLSNNSFDSLPAEG--FSRLSRLQELYLQGNILTFLADHALDGLNSLTVLN 275
R + + LDL D L+R + + + + L LN
Sbjct: 124 RYDGSQQALDLKGLRSDPDLVAQNIDVVLNRR-------SCMAATLRIIEENIPELLSLN 176
Query: 276 LSVNNLVNIPP--ELFNQSRDLKEVYLQNNSINVLAPGIFNVLTQ--LIVLDLSNNELTE 331
LS N L + + ++ +LK + L N + + + L L L N L +
Sbjct: 177 LSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCD 234
Query: 332 EWVNAATF 339
+ + +T+
Sbjct: 235 TFRDQSTY 242
Score = 41.9 bits (98), Expect = 8e-04
Identities = 25/135 (18%), Positives = 51/135 (37%), Gaps = 15/135 (11%)
Query: 392 NLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKL 451
+ L + + + + L+ S L IEEN + L +L+ N+L
Sbjct: 128 SQQALDLKGLRSDPDLV-AQNIDVVLNRRSCMAATLRIIEENIPE----LLSLNLSNNRL 182
Query: 452 T---EIPKVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKG---- 504
++ +++ +LK L+L N + L +L L L N++ + +
Sbjct: 183 YRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTY 242
Query: 505 ---VFEKLSVLTILN 516
+ E+ L L+
Sbjct: 243 ISAIRERFPKLLRLD 257
Score = 36.9 bits (85), Expect = 0.031
Identities = 13/82 (15%), Positives = 32/82 (39%), Gaps = 4/82 (4%)
Query: 872 ERLENLRELYLQYNKIIYISNRTFLS--LTHLKVLQLDHNRITSFA-VWHLSS-QIQSIT 927
E + L L L N++ + + + + +LK+L L N + S + + +++ +
Sbjct: 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELW 226
Query: 928 LTSNPWSCDCDFTEKFRDYLQR 949
L N + ++
Sbjct: 227 LDGNSLCDTFRDQSTYISAIRE 248
Score = 35.0 bits (80), Expect = 0.13
Identities = 23/123 (18%), Positives = 45/123 (36%), Gaps = 21/123 (17%)
Query: 476 EINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTILNLASNKIQKVEAGTFDNNSN 535
L L L + +++ + L+ + + I+ +N
Sbjct: 128 SQQALDLKGLRS---------DPDLVAQNIDVVLNRRSCMAATLRIIE-------ENIPE 171
Query: 536 LVAIRLDGNYLTDIGGLFP---KLPNLVWLNISENLLEWFD--YALIPADLQWLDIHGNQ 590
L+++ L N L + + K PNL LN+S N L+ + L+ L + GN
Sbjct: 172 LLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNS 231
Query: 591 ISE 593
+ +
Sbjct: 232 LCD 234
Score = 33.8 bits (77), Expect = 0.26
Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Query: 850 LKELIILRLDDNRLTEIRGYE--FERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLD 907
+ EL+ L L +NRL + ++ NL+ L L N++ + L+ L LD
Sbjct: 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLD 228
Query: 908 HNRITS 913
N +
Sbjct: 229 GNSLCD 234
Score = 28.8 bits (64), Expect = 9.8
Identities = 26/149 (17%), Positives = 54/149 (36%), Gaps = 15/149 (10%)
Query: 522 IQKVEAGTFDNNSNLVAIRLDGNYLTDIGGLFPKLPNLVWLNISENLLEWFDYALIPADL 581
++ V D + ++I ++ + P L+
Sbjct: 77 LKAVNYKILDRENRRISIIINSS-------APPHTILNELKPEQVEQLKLIMSKRYDGSQ 129
Query: 582 QWLDIHGNQISELGNYFEIESQL-RLTYFDASSNKLTELTGNAIPHSVENLFLTNNLISK 640
Q LD+ G + I+ L R + A+ + E + +L L+NN + +
Sbjct: 130 QALDLKGLRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPE-----LLSLNLSNNRLYR 184
Query: 641 VQPYTFFMK--PNLTRVDLVGNRLKNINQ 667
+ + ++ PNL ++L GN LK+ +
Sbjct: 185 LDDMSSIVQKAPNLKILNLSGNELKSERE 213
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein,
BIG3 domain, LRR domain, STRU genomics; 2.05A
{Bacteroides ovatus} PDB: 4fd0_A
Length = 401
Score = 50.1 bits (120), Expect = 3e-06
Identities = 39/239 (16%), Positives = 94/239 (39%), Gaps = 19/239 (7%)
Query: 338 TFSGLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLI 397
T + + ++ + + + + + L + L N+ ++SI ++ F + S + ++
Sbjct: 84 TITIEGKQKSFSVHISPVRVENGVLTEILKGYNEIILPNS-VKSIPKDAFRN-SQIAKVV 141
Query: 398 MSNNKLKRIESNSLD--SLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIP 455
++ LK I + ++ + + LE ++E+ +L+ L+ K+T++P
Sbjct: 142 LNEG-LKSIGDMAFFNSTVQEIVF----PSTLEQLKEDIFYYCYNLKKADLSKTKITKLP 196
Query: 456 KVLRNLHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTENNISNISKGVFEKLSVLTIL 515
++ + L + EI + + QL + + N+S I + F + +T +
Sbjct: 197 ASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEI-PENVSTIGQEAFRESG-ITTV 253
Query: 516 NLASNKIQKVEAGTFDNNSNLVAIRLDGN-----YLTDIG-GLFPKLPNLVWLNISENL 568
L N + + + F L + G+ I P L I E++
Sbjct: 254 KL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPESI 311
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain,
leucine rich repeats, BFR43, structural genomics, PSI-2;
1.95A {Bacteroides fragilis}
Length = 362
Score = 49.6 bits (117), Expect = 4e-06
Identities = 35/202 (17%), Positives = 70/202 (34%), Gaps = 28/202 (13%)
Query: 92 ECGDMLFFQSSLSPGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLRTHNTDWS 151
E Q LSP + L +L ++ ++ LK+L + + S
Sbjct: 153 EQEISWIEQVDLSP-VLDAMPLLNNLKIKGTNNLSIGKKP---RPNLKSLEIISGGLPDS 208
Query: 152 TMSLDISHNVFTDELQSLESLDLSMNSIWTLPDA---IFCPL------QSLSYLNLTQNK 202
+ ++ +L +LE L L + D +F PL +L +L + +
Sbjct: 209 VVE-----DILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAE 263
Query: 203 LSNVATFSFSNYDTARCGINLRVLDLSNNSFDSLPA----EGFSRLSRLQELYLQGNILT 258
NV F + L +D+S A + ++ L+ + ++ N L+
Sbjct: 264 EQNVVVEMFLE---SDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320
Query: 259 FLADHALDGLNSLTVLNLSVNN 280
D L + + V++
Sbjct: 321 ---DEMKKELQKSLPMKIDVSD 339
Score = 45.7 bits (107), Expect = 6e-05
Identities = 21/134 (15%), Positives = 50/134 (37%), Gaps = 20/134 (14%)
Query: 222 NLRVLDLSNNSF--DSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLN---------S 270
NL+ L++ + + S L L++L L + + D ++ +
Sbjct: 194 NLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPN 253
Query: 271 LTVLNLSVNNLVNIPPELFNQSR---DLKEVYLQNNSI-----NVLAPGIFNVLTQLIVL 322
L L + N+ E+F +S L+ + + + +L + + + L +
Sbjct: 254 LKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHV-DKIKHLKFI 312
Query: 323 DLSNNELTEEWVNA 336
++ N L++E
Sbjct: 313 NMKYNYLSDEMKKE 326
Score = 41.5 bits (96), Expect = 0.001
Identities = 29/190 (15%), Positives = 59/190 (31%), Gaps = 20/190 (10%)
Query: 307 VLAPGIFNVLTQLIVLDLSNNELTEEWVNAATFSG-LHRLVVLNIAYNKMNKLDSSIFKD 365
V F L D+ E W+ S L + +LN K S K
Sbjct: 132 VENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKP 191
Query: 366 LYRLQVLHLENNQI--ESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTA------- 416
L+ L + + + + + L NL L++ ++
Sbjct: 192 RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRF 251
Query: 417 --LSVLSLDNNELEYIEENALKNS---TSLQDFHLNGNKLT-----EIPKVLRNLHSLKT 466
L L + + E + + S L+ ++ LT + + + LK
Sbjct: 252 PNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKF 311
Query: 467 LDLGDNLITE 476
+++ N +++
Sbjct: 312 INMKYNYLSD 321
Score = 39.6 bits (91), Expect = 0.006
Identities = 32/176 (18%), Positives = 60/176 (34%), Gaps = 33/176 (18%)
Query: 434 ALKNSTSLQDFHL-NGNKLTEIPKVLRNLHSLK--TLDLGDNLITEINNLSLNSLHQLAG 490
L L + + N L+ K NL SL+ + L D+++ +I L +L +L
Sbjct: 167 VLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVL 226
Query: 491 LRLTENNISNISKGVF------EKLSVLTILNLASNKIQKVEA---GTFDNNSNLVAIRL 541
E+ + VF ++ L L + + Q V D L + +
Sbjct: 227 YVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDI 286
Query: 542 DGNYLTDIGG--LFPKLPNLVWLNISENLLEWFDYALIPADLQWLDIHGNQISELG 595
LTD G L + + L+++++ N +S+
Sbjct: 287 SAGVLTDEGARLLLDHVDKI-------------------KHLKFINMKYNYLSDEM 323
Score = 37.2 bits (85), Expect = 0.030
Identities = 16/99 (16%), Positives = 32/99 (32%), Gaps = 7/99 (7%)
Query: 848 NGLKELIILRLDDNRLTEIRGY---EFERLENLRELYLQYNKIIYISNRTFL----SLTH 900
+ L L + D + E + L L + + + R L + H
Sbjct: 249 DRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKH 308
Query: 901 LKVLQLDHNRITSFAVWHLSSQIQSITLTSNPWSCDCDF 939
LK + + +N ++ L + S+ D D+
Sbjct: 309 LKFINMKYNYLSDEMKKELQKSLPMKIDVSDSQEYDDDY 347
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR,
cell cycle, protein turnover COM ligase-ligase inhibitor
complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1
c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Length = 336
Score = 48.7 bits (116), Expect = 7e-06
Identities = 46/297 (15%), Positives = 101/297 (34%), Gaps = 40/297 (13%)
Query: 150 WSTMSLDISHNVFTDELQSLESLDLSMN---SIWTLPDAIFCPLQSLSYLNLTQNKLSNV 206
W T+ L + + L ++ S P A + +++L+ + +
Sbjct: 49 WQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVS 108
Query: 207 ATFSFSNYDTARCGINLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHAL- 265
+ +C L+ L L ++ S L L L G + ++ AL
Sbjct: 109 TLHGILS----QC-SKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSG--CSGFSEFALQ 161
Query: 266 ---DGLNSLTVLNLSVNNLVN---IPPELFNQSRDLKEVYLQNNSINVLAPGIFNV---L 316
+ L LNLS + + + S + ++ L N+ + +
Sbjct: 162 TLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRC 221
Query: 317 TQLIVLDLSN-NELTEEWVNAATFSGLHRLVVLNIAYNKMNKLDSSI--FKDLYRLQVLH 373
L+ LDLS+ L + F L+ L L+++ + + ++ ++ L+ L
Sbjct: 222 PNLVHLDLSDSVMLKNDCFQE--FFQLNYLQHLSLSRCY-DIIPETLLELGEIPTLKTLQ 278
Query: 374 LENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYI 430
+ + TL + L ++ N T ++ ++ N + + I
Sbjct: 279 V-------------FGIVPDGTLQLLKEALPHLQIN-CSHFTTIARPTIGNKKNQEI 321
Score = 37.2 bits (86), Expect = 0.028
Identities = 47/279 (16%), Positives = 84/279 (30%), Gaps = 51/279 (18%)
Query: 131 SFRGLRKLKTLTLRTHNTDWSTMSLDISHNVFTDE--------LQSLESLDLSMNSIWTL 182
+FR R L H + + +D+S++V L++L L +
Sbjct: 74 AFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDP 133
Query: 183 PDAIFCPLQSLSYLNLTQ-NKLSNVATFSFSNYDTARCGINLRVLDLSNN---SFDSLPA 238
+L LNL+ + S A + + C L L+LS + +
Sbjct: 134 IVNTLAKNSNLVRLNLSGCSGFSEFALQTLLS----SCS-RLDELNLSWCFDFTEKHVQV 188
Query: 239 EGFSRLSRLQELYLQGNILTFLADHAL----DGLNSLTVLNLSVNNLVNIPPELFNQSRD 294
+ +L L G L L +L L+LS + ++
Sbjct: 189 AVAHVSETITQLNLSG-YRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLK----------- 236
Query: 295 LKEVYLQNNSINVLAPGIFNVLTQLIVLDLSN-NELTEEWVNAATFSGLHRLVVLNIAYN 353
N+ L L L LS ++ E + + L L +
Sbjct: 237 -------NDCFQEFFQ-----LNYLQHLSLSRCYDIIPETLLE--LGEIPTLKTLQVFG- 281
Query: 354 KMNKLDSSIFKDLYRLQVLHLENNQIESIHRNTFASLSN 392
D ++ L L + + +I R T + N
Sbjct: 282 --IVPDGTLQLLKEALPHLQINCSHFTTIARPTIGNKKN 318
Score = 35.2 bits (81), Expect = 0.11
Identities = 32/174 (18%), Positives = 63/174 (36%), Gaps = 12/174 (6%)
Query: 404 KRIESNSLDSLTALSVLSLDNNELEYIEENALKNS-TSLQDFHLNGNKLTE--IPKVLRN 460
K + + L + V++ + A S +Q L+ + + + +L
Sbjct: 57 KNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQ 116
Query: 461 LHSLKTLDLGDNLITEINNLSLNSLHQLAGLRLTE-NNISNIS-KGVFEKLSVLTILNLA 518
L+ L L +++ +L L L L+ + S + + + S L LNL+
Sbjct: 117 CSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLS 176
Query: 519 S-NKI--QKVEAGTFDNNSNLVAIRLDG--NYLTDIG--GLFPKLPNLVWLNIS 565
+ V+ + + + L G L L + PNLV L++S
Sbjct: 177 WCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLS 230
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A
{Paracoccus denitrificans PD1222}
Length = 154
Score = 45.8 bits (109), Expect = 1e-05
Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 4/99 (4%)
Query: 1081 RDKLFDAFVSYSSKDEAFVAEELAPILEN-GDPAYKLCLHYREFPVGGYIGDTIVQAVES 1139
D F+S++ +D+A E LA L G + G + +I + + S
Sbjct: 17 SAPPHDIFISHAWEDKADFVEALAHTLRAAGAEVWY---DDFSLRPGDSLRRSIDKGLGS 73
Query: 1140 SRRTIMVLSENFIKSEWCRYEFKSAHHQVLRGKKRLIVI 1178
SR I+VLS +F K EW + E G+ R++ I
Sbjct: 74 SRFGIVVLSTHFFKKEWPQKELDGLFQLESSGRSRILPI 112
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0,
hydrogen ION transport, inner membrane, ION transport,
membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A
3dze_A 3e2j_A
Length = 176
Score = 42.1 bits (99), Expect = 3e-04
Identities = 26/135 (19%), Positives = 48/135 (35%), Gaps = 18/135 (13%)
Query: 360 SSIFKDLYRLQVLHLENNQIESIHRNTFASLSNLHTLIMSNNKLKRIESNSLDSLTALSV 419
+ D Y++Q + ++ I SI + L + + + IE L+ L+ L
Sbjct: 54 PTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKC--HYIEDGCLERLSQLEN 111
Query: 420 LSLDNNELEYIEENALKNSTSLQDFHLNGNKLTEIPKVLRNLHSLKTLDLGD-NLITEIN 478
L E+E + + ++ D + L + +LK L L D + E
Sbjct: 112 LQKSMLEME------IISCGNVTDKGI---------IALHHFRNLKYLFLSDLPGVKEKE 156
Query: 479 NLSLNSLHQLAGLRL 493
+ L L L
Sbjct: 157 KIVQAFKTSLPSLEL 171
Score = 32.9 bits (75), Expect = 0.37
Identities = 13/94 (13%), Positives = 33/94 (35%), Gaps = 8/94 (8%)
Query: 847 FNGLKELIILRLDDNRLTEIRGYEFERLENLRELYLQYNKII------YISNRTFLSLTH 900
++ + D+ + I E L+ + ++ L I +S L +
Sbjct: 57 PLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSM 116
Query: 901 LKVLQLDHNRITSFAVWHLS--SQIQSITLTSNP 932
L++ + +T + L ++ + L+ P
Sbjct: 117 LEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLP 150
Score = 32.1 bits (73), Expect = 0.56
Identities = 10/60 (16%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 222 NLRVLDLSNNSFDSLPAEGFSRLSRLQELYLQGNILTFLADHALDGLNSLTVLNLSVNNL 281
++ +D +++ S+ + L ++++ L ++ D L+ L+ L L S+ +
Sbjct: 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKC--HYIEDGCLERLSQLENLQKSMLEM 119
Score = 31.7 bits (72), Expect = 0.95
Identities = 14/100 (14%), Positives = 34/100 (34%), Gaps = 11/100 (11%)
Query: 105 PGSFQTLIDLKDLSVEFCKIGNLSAGSFRGLRKLKTLTLR--THNTDWSTMSLDISHNVF 162
P ++ + I ++ GL+ ++ + L + D L +
Sbjct: 54 PTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERL----SQL 109
Query: 163 TDELQSLESLDLSMNSIWTLPDAIF---CPLQSLSYLNLT 199
+ +S+ +++ T D ++L YL L+
Sbjct: 110 ENLQKSMLEMEIISCGNVT--DKGIIALHHFRNLKYLFLS 147
Score = 31.0 bits (70), Expect = 1.6
Identities = 14/116 (12%), Positives = 41/116 (35%), Gaps = 9/116 (7%)
Query: 169 LESLDLSMNSIWTLPDAIFCPLQSLSYLNLTQNK-LSNVATFSFSNYDTARCGINLRVLD 227
++++D + + I ++ LQ + + L + + + S ++ ++
Sbjct: 63 IQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQL--ENLQKSMLEME 120
Query: 228 LSNNSFDSLPAEGF---SRLSRLQELYLQG-NILTFLADHALDGLNSLTVLNLSVN 279
+ + ++ +G L+ L+L + SL L L ++
Sbjct: 121 IISCG--NVTDKGIIALHHFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLELKLD 174
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein
structure initiative, southeast collaboratory for
structural genomics secsg; 1.80A {Caenorhabditis
elegans} SCOP: c.10.1.1
Length = 197
Score = 41.8 bits (98), Expect = 5e-04
Identities = 23/163 (14%), Positives = 55/163 (33%), Gaps = 22/163 (13%)
Query: 403 LKRIESNSLDSLTALSVLSLDNNELEYIEE--NALKNSTSLQDFHLNGNKLTE-----IP 455
+ R+ + L +++ ++ E I A NS ++ F L +++ +
Sbjct: 33 INRLREDD-TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLI 91
Query: 456 KVLRNLHSLKTLDLGDNLITEINNLSL-NSLHQ---LAGLRLTENNISNISKGVFEKL-- 509
+++ SL+ L++ N +T L S + + S + V +
Sbjct: 92 ELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMM 151
Query: 510 -----SVLTILNLASNKI---QKVEAGTFDNNSNLVAIRLDGN 544
L + ++ + +V N + RL +
Sbjct: 152 AIEENESLLRVGISFASMEARHRVSEALERNYERVRLRRLGKD 194
Score = 31.0 bits (70), Expect = 1.7
Identities = 22/134 (16%), Positives = 45/134 (33%), Gaps = 32/134 (23%)
Query: 222 NLRVLDLSNNSFDSLPAEGFSRLSR-------LQELYLQGNILTFLADHAL-DGL---NS 270
+ + +++ N+ + E L +++ L ++ L + + S
Sbjct: 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPS 99
Query: 271 LTVLNLSVNNLVNIPPE---------LFNQSRDLKEVYLQNNSINVL----APGIFNVL- 316
L VLN+ N + PE L QS + E N +VL + +
Sbjct: 100 LRVLNVESN---FLTPELLARLLRSTLVTQS--IVEFKADNQRQSVLGNQVEMDMMMAIE 154
Query: 317 --TQLIVLDLSNNE 328
L+ + +S
Sbjct: 155 ENESLLRVGISFAS 168
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein
binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Length = 185
Score = 41.5 bits (98), Expect = 5e-04
Identities = 31/144 (21%), Positives = 60/144 (41%), Gaps = 32/144 (22%)
Query: 403 LKRIESNSLDSLTALSVLSLDNN----ELEYIEENALKNSTSLQDFHLNGNKLTE----- 453
LKRI++N L ++ L+ N L+ E ALK +T ++ F + G + +
Sbjct: 28 LKRIQNND-PDLEEVN-LNNIMNIPVPTLKACAE-ALKTNTYVKKFSIVGTRSNDPVAFA 84
Query: 454 IPKVLRNLHSLKTLDLGDNLITEI----------NNLSLNSLHQLAGLRLTENNISN--- 500
+ ++L+ ++LK+L++ N I+ +N SL L + + N
Sbjct: 85 LAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELR----IDNQSQPLGNNVE 140
Query: 501 --ISKGVFEKLSVLTILNLASNKI 522
I+ + EK + L +
Sbjct: 141 MEIAN-MLEKNTTLLKFGYHFTQQ 163
Score = 33.4 bits (77), Expect = 0.26
Identities = 34/180 (18%), Positives = 63/180 (35%), Gaps = 61/180 (33%)
Query: 287 ELFNQSRDLKEVYLQNNSINVLAPG---IFNVL---TQLIVLDLSNNELTEEWVNAATFS 340
+ N DL+EV L NN +N+ P L T + + + A
Sbjct: 30 RIQNNDPDLEEVNL-NNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFA---- 84
Query: 341 GLHRLVVLNIAYNKMNKLDSSIFKDLYRLQVLHLENNQI---------ESIHRNTFASLS 391
+A +M K++++ L+ L++E+N I E++ NT
Sbjct: 85 ---------LA--EMLKVNNT-------LKSLNVESNFISGSGILALVEALQSNT----- 121
Query: 392 NLHTLIMSNNKLKRIESNSLDSLTALSVLSLDNNELEYIEENALKNSTSLQDFHLNGNKL 451
+L L + N S L + + + N L+ +T+L F + +
Sbjct: 122 SLIELRIDNQ------SQPLGNNVEMEIA------------NMLEKNTTLLKFGYHFTQQ 163
Score = 32.3 bits (74), Expect = 0.58
Identities = 25/137 (18%), Positives = 44/137 (32%), Gaps = 35/137 (25%)
Query: 223 LRVLDLSNNSFDSLPAEGFSRLSR-------LQELYLQGNILT-----FLADHALDGLNS 270
L ++L+N ++P + +++ + G LA+ L N+
Sbjct: 38 LEEVNLNN--IMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAE-MLKVNNT 94
Query: 271 LTVLNLSVNNLVNIPPE---------LFNQSRDLKEVYLQNNSINVLAPG---IFNVL-- 316
L LN+ N I N S L E+ + N S + I N+L
Sbjct: 95 LKSLNVESN---FISGSGILALVEALQSNTS--LIELRIDNQSQPLGNNVEMEIANMLEK 149
Query: 317 -TQLIVLDLSNNELTEE 332
T L+ +
Sbjct: 150 NTTLLKFGYHFTQQGPR 166
>1n8y_C Protooncoprotein; tyrosin kinase receptor, cell surface receptor,
transferase; HET: NAG; 2.40A {Rattus norvegicus} SCOP:
c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1 PDB: 1n8z_C* 3be1_A*
1s78_A* 3mzw_A* 3n85_A* 2a91_A* 3h3b_A
Length = 608
Score = 41.1 bits (95), Expect = 0.003
Identities = 33/211 (15%), Positives = 52/211 (24%), Gaps = 22/211 (10%)
Query: 589 NQISELGNYFE----IESQLRLTYFDASSN-----KLTELTGN-AIPHSVENLFLTNNL- 637
+ L + ++ ++ L LTY A+++ + E+ G I H+ L
Sbjct: 19 THLDMLRHLYQGCQVVQGNLELTYVPANASLSFLQDIQEVQGYMLIAHNQVKRVPLQRLR 78
Query: 638 -----ISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHKNIPD---FYIGEN 689
Y + N D V LR L S I G
Sbjct: 79 IVRGTQLFEDKYALAVLDNRDPQDNVAASTPGRTPEGLRELQLRSLTEILKGGVLIRGNP 138
Query: 690 PFQCDCNMQWLQSYSVNKERNKPNLVDLDTVTCKLLYNRANPAILLKEAHSNQFLCEYET 749
+ W + N + ++ + C A T
Sbjct: 139 QLCYQDMVLWKDVFRKNNQLAPVDIDTNRSRACPP-CAPACKDNHCWGESPEDCQILTGT 197
Query: 750 NCAPLCHCCDFDAC--DCEMTCPNNCTCYHD 778
C C C C C CT
Sbjct: 198 ICTSGCARCKGRLPTDCCHEQCAAGCTGPKH 228
Score = 30.4 bits (67), Expect = 4.8
Identities = 15/131 (11%), Positives = 33/131 (25%), Gaps = 6/131 (4%)
Query: 672 ISPLPSHKNIPDFYIGENPFQCDCNMQWLQSYSVNKERNKPN-LVDLDTVTCKLLYNRAN 730
+S + + I + + + + S + R + L + +
Sbjct: 401 LSVFQNLRIIRGRILHDGAYSLTLQGLGIHSLGLRSLRELGSGLALIHRNAHLCFVHTVP 460
Query: 731 PAILLKEAHSNQFLCE--YETNCAPLCHCCDFDACDCEMTCPNNC---TCYHDVSWEANV 785
L + H E +C C+ P C H + + V
Sbjct: 461 WDQLFRNPHQALLHSGNRPEEDCGLEGLVCNSLCAHGHCWGPGPTQCVNCSHFLRGQECV 520
Query: 786 IDCSTGGYDNQ 796
+C +
Sbjct: 521 EECRVWKGLPR 531
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein;
2.00A {Arabidopsis thaliana}
Length = 176
Score = 38.7 bits (91), Expect = 0.005
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 1121 REFPVGGYIGDTIVQAVESSRRTIMVLSENFIKSEWC 1157
+E G + +E SR ++V+SEN+ S WC
Sbjct: 44 KELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWC 80
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}
Length = 204
Score = 38.4 bits (90), Expect = 0.007
Identities = 10/37 (27%), Positives = 21/37 (56%)
Query: 1121 REFPVGGYIGDTIVQAVESSRRTIMVLSENFIKSEWC 1157
E G IG +++A++ S+ + ++S + S+WC
Sbjct: 71 DELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKWC 107
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 37.6 bits (86), Expect = 0.008
Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 10/33 (30%)
Query: 401 NKLKRIESNSL-----DSLTALSVLSLDNNELE 428
LK++++ SL DS AL++ +E
Sbjct: 20 QALKKLQA-SLKLYADDSAPALAI----KATME 47
Score = 36.5 bits (83), Expect = 0.017
Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 13/41 (31%)
Query: 589 NQISELGNYFEIESQLRLTYFDASSNKLTELTGNAIPHSVE 629
+ +L ++ L+L Y D S+ L AI ++E
Sbjct: 20 QALKKL------QASLKL-YADDSAPAL------AIKATME 47
Score = 36.1 bits (82), Expect = 0.022
Identities = 11/55 (20%), Positives = 17/55 (30%), Gaps = 31/55 (56%)
Query: 23 SISK---ALRYQAPDECKWFAVTSEGAEIEVPSAAEPDQEVALVCKLRTINSEIE 74
++ K +L+ A D SA P AL I + +E
Sbjct: 21 ALKKLQASLKLYADD-----------------SA--P----AL-----AIKATME 47
Score = 33.4 bits (75), Expect = 0.21
Identities = 9/35 (25%), Positives = 18/35 (51%), Gaps = 7/35 (20%)
Query: 165 ELQSLESLDLSMNSIWTLPDAIFCPLQSLSYLNLT 199
E Q+L+ L S+ ++ D+ P +L+ + T
Sbjct: 18 EKQALKKLQASLK-LYA-DDS--AP--ALA-IKAT 45
>1cr8_A Protein (LOW density lipoprotein receptor related protein); ligand
binding, calcium binding, LDLR, LRP, lipid binding
protein; NMR {Homo sapiens} SCOP: g.12.1.1
Length = 42
Score = 32.2 bits (74), Expect = 0.048
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 6/38 (15%)
Query: 739 HSNQFLCEYETNCAPLCHCCDFDACDC-----EMTCPN 771
H+++F C + C PL CD D DC E +C
Sbjct: 5 HTDEFQCRLDGLCIPLRWRCDGDT-DCMDSSDEKSCEG 41
>2rjq_A Adamts-5; metalloprotease domain, aggrecanase, cleavage on PAIR of
BAS residues, extracellular matrix, glycoprotein,
hydrolase, ME binding; HET: NAG BAT; 2.60A {Homo
sapiens}
Length = 378
Score = 36.2 bits (83), Expect = 0.061
Identities = 14/99 (14%), Positives = 23/99 (23%), Gaps = 13/99 (13%)
Query: 692 QCDCNMQWLQSYSVNKERNKPNLVDLDTVTCKLLYNRANPAILLKEAHSNQFLCEYETNC 751
QC+ + YSV C L+ + E T C
Sbjct: 235 QCNL--TFGPEYSVCP----------GMDVCARLWCAVVRQGQMVCLTKKLPAVE-GTPC 281
Query: 752 APLCHCCDFDACDCEMTCPNNCTCYHDVSWEANVIDCST 790
C D + + + + + CS
Sbjct: 282 GKGRICLQGKCVDKTKKKYYSTSSHGNWGSWGSWGQCSR 320
>2kny_A LRP-1, linker, APO-E; lipoprotein receptor, ligand binding module,
COMP repeat, calcium, cell membrane, coated PIT,
cytoplasm, DEVE protein; NMR {Homo sapiens}
Length = 80
Score = 32.9 bits (75), Expect = 0.071
Identities = 9/57 (15%), Positives = 13/57 (22%), Gaps = 16/57 (28%)
Query: 740 SNQFLCEYETNCAPLCHCCDFDACDC---------------EMTCPNNCTCYHDVSW 781
+ F C C P CD D DC + ++
Sbjct: 11 PSSFSCPGTHVCVPERWLCDGDK-DCADGADESIAAGCLYNSTGSGSGSGSTEELRV 66
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET:
NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Length = 423
Score = 35.5 bits (81), Expect = 0.10
Identities = 12/83 (14%), Positives = 21/83 (25%), Gaps = 4/83 (4%)
Query: 712 PNLVDLDTVTCKLLYNRANPAILLK---EAHSNQFLCEYETNCAPLCHCCDFDACDCEMT 768
+ D ++ K + + A++ K HS + L H DA
Sbjct: 111 VDKGDNVNISFKKVLIKEEDAVIYKNGSFIHSVPRHEVPDILEVHLPHAQPQDAGVYS-A 169
Query: 769 CPNNCTCYHDVSWEANVIDCSTG 791
+ V C
Sbjct: 170 RYIGGNLFTSAFTRLIVRRCEAQ 192
Score = 30.4 bits (68), Expect = 4.0
Identities = 10/65 (15%), Positives = 20/65 (30%), Gaps = 17/65 (26%)
Query: 745 CEYETNCAPLCHCCDFDACD---------------CEMTCPNNCTCYHDVSWEANVIDCS 789
Y +C C C + + CD CE + + I+ +
Sbjct: 283 GFYGPDCKLRCSCNNGEMCDRFQGCLCSPGWQGLQCEREGI--PRMTPKIVDLPDHIEVN 340
Query: 790 TGGYD 794
+G ++
Sbjct: 341 SGKFN 345
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone
receptor/immune system complex; 3.80A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1
PDB: 3loh_E
Length = 897
Score = 35.3 bits (80), Expect = 0.18
Identities = 46/298 (15%), Positives = 86/298 (28%), Gaps = 32/298 (10%)
Query: 745 CEYETNCAPLCHCCDFDACDCEMTCPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMD 804
C C C CP C ID T + + I
Sbjct: 288 CPSGYTMNSSNLLCT----PCLGPCPKVCHLLEG----EKTIDSVTSAQELRGCTVINGS 339
Query: 805 ATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLT 864
GN + + +++ +L + + +F LRL
Sbjct: 340 LIINIRGGNNLAAELEANLGLIEEIS-GYLKIRRSYALVSLSF-----FRKLRLIRGETL 393
Query: 865 EIRGYEFERLEN--LRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRITSFAVWHLSSQ 922
EI Y F L+N LR+L+ + I+ + K+ + +++ + +
Sbjct: 394 EIGNYSFYALDNQNLRQLWDWSKHNLTITQGKLFFHYNPKLCLSEIHKMEEVSGTKGRQE 453
Query: 923 IQSITLTSNPWSCDCDFTEKFRDYLQRSRSSV---------HDISQIRCMTGSEVGFTIM 973
I L +N C+ Y++ S + D + +GF +
Sbjct: 454 RNDIALKTNGDQASCENELLKFSYIRTSFDKILLRWEPYWPPDFRDL-------LGFMLF 506
Query: 974 RTVIPSCNVVSTNVSSHSNNNNNTTTTTTTTTIFIPEHSPMNGSFILSELQPQQDYVF 1031
P NV + +N+ T S + +++ L+P Y
Sbjct: 507 YKEAPYQNVTEFDGQDACGSNSWTVVDIDPPLRSNDPKSQNHPGWLMRGLKPWTQYAI 564
Score = 31.8 bits (71), Expect = 1.8
Identities = 16/100 (16%), Positives = 29/100 (29%), Gaps = 8/100 (8%)
Query: 696 NMQWLQSYSVNKERNKPNLVDLDTVTCKLLYNRANPAILLKEAHSNQFLCEYETNCAPLC 755
N+ + SV E+N L L T+ + + ++ N+ C +C
Sbjct: 108 NLMNITRGSVRIEKN-NELCYLATIDWSRILDSVEDNHIVLNKDDNE-------ECGDIC 159
Query: 756 HCCDFDACDCEMTCPNNCTCYHDVSWEANVIDCSTGGYDN 795
+C T N + C T +
Sbjct: 160 PGTAKGKTNCPATVINGQFVERCWTHSHCQKVCPTICKSH 199
>2knx_A Prolow-density lipoprotein receptor-related prote; LDLR, ligand
binding module, ligand binding repeat, compleme repeat,
protein binding; NMR {Homo sapiens}
Length = 50
Score = 30.8 bits (70), Expect = 0.21
Identities = 12/44 (27%), Positives = 13/44 (29%), Gaps = 9/44 (20%)
Query: 739 HSNQFLCEYETNCAPLCHCCDFDACDC-----EMTCPN---NCT 774
+ F C C P CD D DC E N T
Sbjct: 8 GPSSFSCPGTHVCVPERWLCDGDK-DCADGADESIAAGCLYNST 50
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex,
beta propeller, cholesterol clearance, PCSK
autocatalytic cleavage; 7.01A {Homo sapiens}
Length = 791
Score = 34.0 bits (77), Expect = 0.34
Identities = 18/102 (17%), Positives = 23/102 (22%), Gaps = 2/102 (1%)
Query: 687 GENPFQCDCNMQWLQSYSVNKERNKPNLVDLDTVTCKLLYNRANPAILLKEAHSNQFLCE 746
G N F+C N R+ + D C N N
Sbjct: 275 GPNKFKCHSGECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNG--GCSHVCNDLKIG 332
Query: 747 YETNCAPLCHCCDFDACDCEMTCPNNCTCYHDVSWEANVIDC 788
YE C C+ C + TC C
Sbjct: 333 YECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKC 374
Score = 31.7 bits (71), Expect = 2.0
Identities = 15/112 (13%), Positives = 27/112 (24%), Gaps = 1/112 (0%)
Query: 737 EAHSNQFLCEYETNCAPLCHCCDFDACDCEMTCPNNCTCYHDVSWEANVIDCSTGGYDNQ 796
E E N H C+ E CP+ ++ +C +Q
Sbjct: 305 EPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGF-QLVAQRRCEDIDECQDPDTCSQ 363
Query: 797 LPPRIPMDATELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFN 848
L + +G ++ + F N V +
Sbjct: 364 LCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSE 415
>3oka_C N-terminal His-affinity TAG; GT-B fold, alpha-mannosyltransferase,
GDP-MAN binding, trans; HET: GDD; 2.20A {Escherichia
coli}
Length = 26
Score = 29.3 bits (65), Expect = 0.38
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 1240 AHHHNHNHRHHQHHH 1254
HHH+H+H HH H
Sbjct: 2 GHHHHHHHHHHSSGH 16
Score = 27.8 bits (61), Expect = 1.4
Identities = 7/12 (58%), Positives = 10/12 (83%)
Query: 1245 HNHRHHQHHHNN 1256
H+H HH HHH++
Sbjct: 3 HHHHHHHHHHSS 14
Score = 26.6 bits (58), Expect = 3.8
Identities = 7/12 (58%), Positives = 10/12 (83%)
Query: 1247 HRHHQHHHNNTS 1258
H HH HHH+++S
Sbjct: 3 HHHHHHHHHHSS 14
>2i1p_A Low-density lipoprotein receptor-related protein 2; cysteine-rich
repeat, ligand binding domain, calcium CAGE, ligand
binding protein; NMR {Rattus norvegicus}
Length = 48
Score = 30.0 bits (68), Expect = 0.40
Identities = 12/39 (30%), Positives = 15/39 (38%), Gaps = 6/39 (15%)
Query: 740 SNQFLCEYETNCAPLCHCCDFDACDC-----EMTCPNNC 773
S QF C ++C + CD DC E CP
Sbjct: 9 SAQFKCADGSSCINSRYRCDGVY-DCRDNSDEAGCPTRP 46
>2arp_F Follistatin; cystine knot, disulfide rich, EGF domain, kazal
domain, PROT complex, hormone-growth factor complex;
HET: 1PG; 2.00A {Rattus norvegicus}
Length = 152
Score = 31.8 bits (71), Expect = 0.69
Identities = 21/111 (18%), Positives = 31/111 (27%), Gaps = 14/111 (12%)
Query: 692 QCDCNMQWLQSYSVNKERNKPNLVDLDTVT----CKLLYNRANPAILLKEAHSNQFLCEY 747
+C C + K + LD T C LL R L+ + +
Sbjct: 26 RCVCAPD------CSNITWKGPVCGLDGKTYRNECALLKARCKEQPELEVQYQGKCKKTC 79
Query: 748 ETNCAPLCHCCDFDACDCEMTCPNNCTCYHDVSWEANVIDCSTGG--YDNQ 796
P C D + N C S E ++ C G Y +
Sbjct: 80 RDVFCPGSSTCVVDQTNNAYCVTCNRICPEPSSSEQSL--CGNDGVTYSSA 128
>1kzq_A Major surface antigen P30; SAG1, parasite invasion, MAD, immune
system; 1.70A {Toxoplasma gondii} SCOP: b.6.2.1 b.6.2.1
PDB: 1ynt_F
Length = 289
Score = 32.4 bits (73), Expect = 0.86
Identities = 15/92 (16%), Positives = 21/92 (22%), Gaps = 12/92 (13%)
Query: 719 TVTCKLLYNRANPAILLKEAHSNQFLCEYETNCAPLCHCCDFDACDCEMTCPNNCTC--- 775
VTC IL + C P + C ++CT
Sbjct: 10 VVTCPD-KKSTAAVILTPTENHFTLKCPKTALTEPPTLAYSPNRQICPAGTTSSCTSKAV 68
Query: 776 --------YHDVSWEANVIDCSTGGYDNQLPP 799
D W + T G +P
Sbjct: 69 TLSSLIPEAEDSWWTGDSASLDTAGIKLTVPI 100
>2fj8_A BBBI, bowman-BIRK type trypsin inhibitor; all-beta, hydrolase
inhibitor; 1.19A {Hordeum vulgare} SCOP: g.3.13.1 PDB:
1tx6_I 1c2a_A
Length = 125
Score = 30.9 bits (69), Expect = 0.90
Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 7/44 (15%)
Query: 737 EAHSNQFLCE--YETNCAPLCH---CCDFDACDCEMTCPNNCTC 775
++ +C+ Y + P+C CCD C + P C C
Sbjct: 43 MGDPSRRICQDQYVGDPGPICRPWECCDK--AICTRSNPPTCRC 84
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion,
pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo
sapiens} PDB: 3k71_B* 3k72_B*
Length = 687
Score = 32.8 bits (74), Expect = 0.95
Identities = 9/48 (18%), Positives = 15/48 (31%), Gaps = 3/48 (6%)
Query: 744 LCEYETNCAPLCHCCDFDACDCEMTCPNNCTCYHDVSWEANVIDCSTG 791
L + + C+ C C + C+ E + C TG
Sbjct: 409 LGFTDIVTVQVLPQCE---CRCRDQSRDRSLCHGKGFLECGICRCDTG 453
Score = 30.1 bits (67), Expect = 5.4
Identities = 11/62 (17%), Positives = 16/62 (25%), Gaps = 15/62 (24%)
Query: 745 CEYETNCAPLC-------HCCDFDA----CDCEMTCPNNCTCYHDVSW----EANVIDCS 789
C+ C C C F+ +C CP + V E + C
Sbjct: 590 CQECPGCPSPCGKYISCAECLKFEKGPFGKNCSAACPGLQLSNNPVKGRTCKERDSEGCW 649
Query: 790 TG 791
Sbjct: 650 VA 651
Score = 29.7 bits (66), Expect = 7.5
Identities = 11/63 (17%), Positives = 15/63 (23%), Gaps = 11/63 (17%)
Query: 740 SNQFLCEYETNCAPL---CHC--------CDFDACDCEMTCPNNCTCYHDVSWEANVIDC 788
N +C C C C + P C NV +C
Sbjct: 522 YNGQVCGGPGRGLCFCGKCRCHPGFEGSACQCERTTEGCLNPRRVECSGRGRCRCNVCEC 581
Query: 789 STG 791
+G
Sbjct: 582 HSG 584
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell
adhesion, DI mutation, glycoprotein, HOST-virus
interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo
sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Length = 690
Score = 32.8 bits (74), Expect = 0.99
Identities = 6/50 (12%), Positives = 13/50 (26%), Gaps = 4/50 (8%)
Query: 745 CEYETNCAPLCHCCDFDACDCEMTCPNNCTCYHDVSWEAN----VIDCST 790
C E DA +C ++C +++ +
Sbjct: 635 CRDEIESVKELKDTGKDAVNCTYKNEDDCVVRFQYYEDSSGKSILYVVEE 684
Score = 30.1 bits (67), Expect = 5.4
Identities = 11/49 (22%), Positives = 15/49 (30%), Gaps = 5/49 (10%)
Query: 745 CEYETNCAPLCHCCDFDACDCEMTCPNNCTCYHDVSWEANVIDCSTGGY 793
C + P H C+ E C C W + +CS Y
Sbjct: 435 CACQAQAEPNSHRCNNGNGTFE---CGVCRCGPG--WLGSQCECSEEDY 478
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial
hypercholesterolemia, cholestero metabolism, lipid
transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens}
SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1
g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A
1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Length = 699
Score = 32.5 bits (73), Expect = 1.1
Identities = 19/130 (14%), Positives = 32/130 (24%), Gaps = 21/130 (16%)
Query: 687 GENPFQCDCNMQWLQSYSVNKERNKPNLVDLDTVTCKLLYNRANPAILLKEAHSNQFLCE 746
G N F+C N R+ + D C E
Sbjct: 257 GPNKFKCHSGECITLDKVCNMARDCRDWSDEPIKEC--------------------GTNE 296
Query: 747 YETNCAPLCHCCDFDACDCEMTCPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDAT 806
N H C+ E CP+ ++ +C +QL +
Sbjct: 297 CLDNNGGCSHVCNDLKIGYECLCPDGF-QLVAQRRCEDIDECQDPDTCSQLCVNLEGGYK 355
Query: 807 ELYLDGNRIP 816
+G ++
Sbjct: 356 CQCEEGFQLD 365
Score = 31.3 bits (70), Expect = 2.5
Identities = 21/97 (21%), Positives = 33/97 (34%), Gaps = 11/97 (11%)
Query: 687 GENPFQCDCNMQWLQSYSVNKERNKPNLVDLDTVTCKLLYNRANPAILLKEAHSNQFLCE 746
G FQC+ + Q ++ + + + + D C+ LY + + +F C
Sbjct: 128 GPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDS---SPCSAFEFHCL 184
Query: 747 YETNCAPLCHCCDFDACDC-----EMTCPNNCTCYHD 778
C CD DC E C TC D
Sbjct: 185 -SGECIHSSWRCDGG-PDCKDKSDEENCA-VATCRPD 218
Score = 29.4 bits (65), Expect = 9.4
Identities = 7/44 (15%), Positives = 11/44 (25%), Gaps = 5/44 (11%)
Query: 748 ETNCAPLCHCCDFDACDCEMTCPNNCTCYHDVSWEANVIDCSTG 791
E C + C + C ++ C DC
Sbjct: 246 EVGCVNVTLCEGPNKFKC-----HSGECITLDKVCNMARDCRDW 284
>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1;
transhydrogenase domain I, oxidoreductase; 1.81A
{Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB:
1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A*
2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*
Length = 384
Score = 31.9 bits (73), Expect = 1.4
Identities = 11/45 (24%), Positives = 20/45 (44%), Gaps = 10/45 (22%)
Query: 765 CEMTCPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELY 809
C ++ P H V ++ G+ N +P R+ DA+ L+
Sbjct: 301 CPLSEPGKIVVKHGVK----IV-----GHTN-VPSRVAADASPLF 335
>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG,
short-chain alcohol reductase, fatty acid biosynthesis,
apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2
Length = 285
Score = 31.8 bits (73), Expect = 1.4
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 1240 AHHHNHNHRHHQHHHNNTSQEKIPGMGISS 1269
HHH+H+H HH H K+ M + S
Sbjct: 2 GHHHHHHHHHHSSGHIEGRHMKLEFMNLLS 31
>3odm_A Pepcase, PEPC, phosphoenolpyruvate carboxylase; beta-barrel, lyase;
2.95A {Clostridium perfringens}
Length = 560
Score = 32.0 bits (72), Expect = 1.5
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 1240 AHHHNHNHRHHQHHH--NNTSQEKIP 1263
HHH+H+H HH H ++ KIP
Sbjct: 2 GHHHHHHHHHHSSGHIDDDDKHMKIP 27
>1pq4_A Periplasmic binding protein component of AN ABC T uptake transporter;
ZNUA, loop, metal-binding, metal binding protein; 1.90A
{Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A
Length = 291
Score = 31.6 bits (72), Expect = 1.5
Identities = 5/20 (25%), Positives = 8/20 (40%)
Query: 1235 HLNHSAHHHNHNHRHHQHHH 1254
H +HS H+H +
Sbjct: 104 HDDHSHDGHDHGSESEKEKA 123
Score = 31.2 bits (71), Expect = 2.0
Identities = 3/21 (14%), Positives = 5/21 (23%)
Query: 1235 HLNHSAHHHNHNHRHHQHHHN 1255
+H H H +
Sbjct: 106 DHSHDGHDHGSESEKEKAKGA 126
Score = 30.8 bits (70), Expect = 2.3
Identities = 1/20 (5%), Positives = 3/20 (15%)
Query: 1235 HLNHSAHHHNHNHRHHQHHH 1254
+ H +
Sbjct: 108 SHDGHDHGSESEKEKAKGAL 127
Score = 30.5 bits (69), Expect = 3.6
Identities = 2/20 (10%), Positives = 4/20 (20%)
Query: 1235 HLNHSAHHHNHNHRHHQHHH 1254
H H + +
Sbjct: 109 HDGHDHGSESEKEKAKGALM 128
Score = 29.3 bits (66), Expect = 8.9
Identities = 3/20 (15%), Positives = 5/20 (25%)
Query: 1235 HLNHSAHHHNHNHRHHQHHH 1254
+ H H+H
Sbjct: 102 EGHDDHSHDGHDHGSESEKE 121
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo
sapiens}
Length = 426
Score = 31.7 bits (71), Expect = 1.6
Identities = 26/147 (17%), Positives = 35/147 (23%), Gaps = 20/147 (13%)
Query: 671 RISPLPSHKNIPDFYIGENPFQCDCNMQWLQSYSVNKERNKPNLVDLDTVT---CKLLYN 727
S + F Y L D TVT +LL
Sbjct: 212 TGYTTNSKIIHFEIKDRFAFFAGPRLRNMASLYGQLD--TTKKLRDFFTVTDLRIRLLRP 269
Query: 728 RANPAILLKEAHSNQFLCEYETNCAPLCHC------CDFD----ACDCEM-TCPNNC-TC 775
+ + + F + C C C +D C+CE T +C C
Sbjct: 270 AVGEIFVDELHLARYFYAISDIKVRGRCKCNLHATVCVYDNSKLTCECEHNTTGPDCGKC 329
Query: 776 ---YHDVSWEANVIDCSTGGYDNQLPP 799
Y W G N P
Sbjct: 330 KKNYQGRPWSPGSYLPIPKGAANACIP 356
Score = 31.4 bits (70), Expect = 1.9
Identities = 15/63 (23%), Positives = 21/63 (33%), Gaps = 7/63 (11%)
Query: 721 TCKLLYNRA--NPAILLKEAHSNQFLCEYETNCAPLCHCCDFDACDCEM--TCPNN--CT 774
CK Y +P L C + + + CD + C+ TC NN C
Sbjct: 328 KCKKNYQGRPWSPGSYLPIPKGAANACIP-SISSIGTNVCDNELLHCQNGGTCHNNVRCL 386
Query: 775 CYH 777
C
Sbjct: 387 CPA 389
>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone,
rotamase; NMR {Escherichia coli}
Length = 171
Score = 30.7 bits (70), Expect = 1.7
Identities = 10/14 (71%), Positives = 12/14 (85%)
Query: 1241 HHHNHNHRHHQHHH 1254
HHH+H+H HH HHH
Sbjct: 158 HHHDHDHDHHHHHH 171
>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.60A {Sinorhizobium meliloti}
Length = 405
Score = 31.5 bits (72), Expect = 1.9
Identities = 10/45 (22%), Positives = 15/45 (33%), Gaps = 10/45 (22%)
Query: 765 CEMTCPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELY 809
E T V ++ G+ N + RI A+ LY
Sbjct: 319 IEGAEAGKVTEVGGVR----IV-----GHLN-VAGRIAASASLLY 353
>2hr7_A Insulin receptor; hormone receptor, leucine rich repeat,
transferase; HET: NAG BMA MAN FUC P33; 2.32A {Homo
sapiens}
Length = 486
Score = 31.4 bits (70), Expect = 2.1
Identities = 7/47 (14%), Positives = 11/47 (23%)
Query: 750 NCAPLCHCCDFDACDCEMTCPNNCTCYHDVSWEANVIDCSTGGYDNQ 796
C +C +C T N + C T +
Sbjct: 154 ECGDICPGTAKGKTNCPATVINGQFVERCWTHSHCQKVCPTICKSHG 200
>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle
structural genomics center for infectious disease, S
tuberculosis; 1.82A {Mycobacterium smegmatis str}
Length = 381
Score = 31.5 bits (72), Expect = 2.1
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 10/45 (22%)
Query: 765 CEMTCPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDATELY 809
CE+T P +H V+ + N LP +P A+ELY
Sbjct: 309 CELTEPGRTIVHHGVT----IT-----SPLN-LPATMPEHASELY 343
>2ahx_A P180ERBB4, receptor tyrosine-protein kinase ERBB-4; X-RAY
crystallography, neuregulins, heparin-binding, cell CY
signaling protein; HET: NAG NDG; 2.40A {Homo sapiens}
PDB: 3u2p_A*
Length = 617
Score = 31.6 bits (70), Expect = 2.2
Identities = 19/106 (17%), Positives = 27/106 (25%), Gaps = 11/106 (10%)
Query: 692 QCDCNMQWLQSYSVNKERNKPNLVDLDTVTCKLLYNRANPAILLKEAHSNQFLCEYETNC 751
C + W + + + +C L N +C C
Sbjct: 482 LCSSDGCWGPGPDQCLSCRRFSRGRICIESCNLYDG-------EFREFENDSICV---EC 531
Query: 752 APLCHCCDFDACDCEMTCPNNCT-CYHDVSWEANVIDCSTGGYDNQ 796
P C + C P+NCT C H V C G
Sbjct: 532 DPQCEKMEDGLLTCHGPGPDNCTKCSHFKDGPNCVEKCPDGLQGAN 577
>1fft_C Ubiquinol oxidase; electron transport, cytochrome oxidase, membrane
protein, oxidoreductase; HET: HEM HEO; 3.50A {Escherichia
coli} SCOP: f.25.1.1
Length = 204
Score = 30.7 bits (70), Expect = 2.4
Identities = 8/30 (26%), Positives = 10/30 (33%), Gaps = 1/30 (3%)
Query: 1236 LNHSAHHHNHNHRHHQHHHNNTSQEKIPGM 1265
+ H H H HH+ KI G
Sbjct: 1 MATDTLTHATAHAHEHGHHDAGGT-KIFGF 29
>1ezg_A Thermal hysteresis protein isoform YL-1; insect antifreeze protein,
iodination, right-handed beta-helix, tmafp; 1.40A
{Tenebrio molitor} SCOP: b.80.2.1 PDB: 1l1i_A
Length = 84
Score = 28.6 bits (63), Expect = 3.5
Identities = 8/32 (25%), Positives = 12/32 (37%)
Query: 745 CEYETNCAPLCHCCDFDACDCEMTCPNNCTCY 776
C +C C C+ TC N+ C+
Sbjct: 27 CTNSQHCVKANTCTGSTDCNTAQTCTNSKDCF 58
>3i08_A Neurogenic locus notch homolog protein 1; SEA domain, LIN-12 notch
repeat, LNR, heterodimerization domain, HD, activator,
ANK repeat, calcium; 3.20A {Homo sapiens}
Length = 220
Score = 29.8 bits (66), Expect = 4.3
Identities = 15/64 (23%), Positives = 22/64 (34%), Gaps = 14/64 (21%)
Query: 751 CAPLC--HCCDFDACDCEMT-------CPNNCTCYHDVS-----WEANVIDCSTGGYDNQ 796
C+ C H C +D DC + C + C+ S + N C G+D Q
Sbjct: 19 CSLQCNNHACGWDGGDCSLNFNDPWKNCTQSLQCWKYFSDGHCDSQCNSAGCLFDGFDCQ 78
Query: 797 LPPR 800
Sbjct: 79 RAEG 82
>1nzi_A Complement C1S component; calcium, innate immunity, modular
structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens}
SCOP: b.23.1.1 g.3.11.1
Length = 159
Score = 29.0 bits (65), Expect = 5.5
Identities = 11/58 (18%), Positives = 18/58 (31%), Gaps = 8/58 (13%)
Query: 739 HSNQ---FLCEYETNCAPLCHCCDFDACDCEMTCPN-----NCTCYHDVSWEANVIDC 788
SN+ + C DF C C N C+C + ++ +C
Sbjct: 99 FSNEERFTGFAAYYVATDINECTDFVDVPCSHFCNNFIGGYFCSCPPEYFLHDDMKNC 156
>3k7n_A K-like; SVMP, hydrolase; HET: NAG FUC FUL; 2.30A {Naja atra}
Length = 397
Score = 30.0 bits (67), Expect = 5.6
Identities = 8/54 (14%), Positives = 13/54 (24%), Gaps = 3/54 (5%)
Query: 725 LYNRANPAILLKEAHSNQFLCEYETNCAPLCHCCDFDACDCEMTC---PNNCTC 775
+ N+ ++ + E C AC TC C
Sbjct: 200 ILNKPLSTDIVSPPICGNYFVEVGEECDCGSPQACQSACCNAATCQFKGAETEC 253
>3t5o_A Complement component C6; macpf, MAC, membrane attack complex,
innate IMMU system, blood, membrane, cytolysin, immune
SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens}
PDB: 4a5w_B* 4e0s_B*
Length = 913
Score = 30.2 bits (67), Expect = 5.7
Identities = 19/103 (18%), Positives = 32/103 (31%), Gaps = 15/103 (14%)
Query: 698 QWLQSYSVNKERNKPNLVDLDTVTCKLLYNRANPAILLKEAHSNQFLCEYETNCAPLCHC 757
+WL+S N P ++D + L R P + K + + L EY P C C
Sbjct: 450 EWLESVKEN-----PAVIDFELAPIVDLV-RNIPCAVTKRNNLRKALQEYAAKFDP-CQC 502
Query: 758 CDFDAC--------DCEMTCPNNCTCYHDVSWEANVIDCSTGG 792
+C C + + + + G
Sbjct: 503 APCPNNGRPTLSGTECLCVCQSGTYGENCEKQSPDYKSNAVDG 545
>3ebl_A Gibberellin receptor GID1; alpha/beta hydrolase, lipase, gibberellin
signaling pathway, hydrolase, nucleus, hydrolase
receptor; HET: GA4; 1.90A {Oryza sativa subsp} PDB:
3ed1_A*
Length = 365
Score = 29.7 bits (67), Expect = 5.9
Identities = 8/17 (47%), Positives = 13/17 (76%)
Query: 1234 RHLNHSAHHHNHNHRHH 1250
+L + +HHH+H+H HH
Sbjct: 349 ANLYYGSHHHHHHHHHH 365
>3i2t_A Epidermal growth factor receptor, isoform A; EGFR, ectodomain,
unliganded, autoinhibited, ATP nucleotide-binding,
tyrosine-protein kinase; HET: NDG NAG BMA; 2.70A
{Drosophila melanogaster} PDB: 3ltf_A* 3ltg_A
Length = 551
Score = 30.0 bits (66), Expect = 6.1
Identities = 28/236 (11%), Positives = 55/236 (23%), Gaps = 37/236 (15%)
Query: 589 NQISELGNYFE----IESQLRLTYFDASSN------KLTELTG-NAIPHSVENLFLTNNL 637
+ L + + ++ L LT+ + + E+TG I H + L
Sbjct: 24 HHYRNLRDRYTNCTYVDGNLELTWLPNENLDLSFLDNIREVTGYILISHVDVKKVVFPKL 83
Query: 638 ISKVQPYTFFMKPNLTRVDLVGNRLKNINQTALRISPLPSHKNIPD--FYIGENPFQC-- 693
F + + L + + + +P +++ + N C
Sbjct: 84 QIIRGRTLFSLSVEEEKYALF------VTYSKMYTLEIPDLRDVLNGQVGFHNNYNLCHM 137
Query: 694 ----------DCNMQWLQSYSVNKERNKPNLVDLDTVTCKLLYNRANPAILLKEAHS--N 741
+ + ER P + T C +
Sbjct: 138 RTIQWSEIVSNGTDAYYNYDFTAPERECPKCHESCTHGCWGEGPKNCQKFSKLTCSPQCA 197
Query: 742 QFLCEYETNCAPLCHCCDFDACDCEMTCPNNCT-CYHDVSWEANVIDCSTGGYDNQ 796
C C A C +C C + +C N
Sbjct: 198 GGRCYGPKPRECCHLFC---AGGCTGPTQKDCIACKNFFDEGVCKEECPPMRKYNP 250
>3eto_A Neurogenic locus notch homolog protein 1; alpha-beta sandwich, HD
domain, LNR repeat, calcium-binding, domain,
autoinhibition, activator, T-all; 2.00A {Homo sapiens}
PDB: 3l95_X* 3i08_B 1pb5_A
Length = 242
Score = 29.4 bits (65), Expect = 6.4
Identities = 15/60 (25%), Positives = 22/60 (36%), Gaps = 14/60 (23%)
Query: 751 CAPLC--HCCDFDACDCEMT-------CPNNCTCYHDVS-----WEANVIDCSTGGYDNQ 796
C+ C H C +D DC + C + C+ S + N C G+D Q
Sbjct: 19 CSLQCNNHACGWDGGDCSLNFNDPWKNCTQSLQCWKYFSDGHCDSQCNSAGCLFDGFDCQ 78
>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG;
2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A
Length = 625
Score = 29.8 bits (67), Expect = 6.9
Identities = 13/78 (16%), Positives = 21/78 (26%), Gaps = 5/78 (6%)
Query: 742 QFLCEYETNCAPLCHCCDFDACDCEMTCPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRI 801
Q LC C + +C+ + + GY +L
Sbjct: 318 QKLCTNAVRCQFFTYTPAQASCNEGKGKCYLKLSSNGSPTKILHGRGGISGYTLRLCKMD 377
Query: 802 PMDATELYLDGNRIPVVG 819
T++ RI VG
Sbjct: 378 NECTTKI---KPRI--VG 390
>1yy9_A Epidermal growth factor receptor; cell surface receptor, tyrosine
kinase, glycoprotein, antigen:antibody complex, FAB
fragment, antitumor, drug; HET: NDG NAG BMA MAN; 2.60A
{Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1
PDB: 3qwq_A* 1nql_A* 3b2v_A* 1ivo_A* 3njp_A*
Length = 624
Score = 29.6 bits (65), Expect = 9.0
Identities = 27/209 (12%), Positives = 53/209 (25%), Gaps = 7/209 (3%)
Query: 747 YETNCAPLCHCCDFDACDCEMTCPNNCTCYHDVSWEANVIDCSTGGYDNQLPPRIPMDAT 806
Y + + Y + V C Y+ + +
Sbjct: 246 YNPTTYQMDVNPEGKYSFGATCVKKCPRNYVVTDHGSCVRACGADSYEME---EDGVRKC 302
Query: 807 ELYLDGNRIPVVGSHSFIGRKKLQILFLNSSHVETIHNKTFNGLKELIILRLDDNRLTEI 866
+ R G + L I N H + + + + + R D T
Sbjct: 303 KKCEGPCRKVCNGIGIGEFKDSLSINATNIKHFKNCTSISGDLHILPVAFRGDSFTHTPP 362
Query: 867 RGYEFERLENLRELYLQYNKIIYISNRTFLSLTHLKVLQLDHNRI---TSFAVWHLSSQI 923
+ + + + I L + L++ R F++ +S I
Sbjct: 363 LDPQELDILKTVKEITGFLLIQAWPE-NRTDLHAFENLEIIRGRTKQHGQFSLAVVSLNI 421
Query: 924 QSITLTSNPWSCDCDFTEKFRDYLQRSRS 952
S+ L S D D L + +
Sbjct: 422 TSLGLRSLKEISDGDVIISGNKNLCYANT 450
>2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell
adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A
Length = 217
Score = 28.8 bits (64), Expect = 9.8
Identities = 9/52 (17%), Positives = 13/52 (25%), Gaps = 7/52 (13%)
Query: 745 CEYETNCAPLCHCCDFDACDCEMTCPNNCTCYHDVSWEANVIDCSTGGYDNQ 796
C C +C C C + +C T G +Q
Sbjct: 86 CRCRDQSRDRSLCHGKGFLEC-----GICRCDTG--YIGKNCECQTQGRSSQ 130
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.135 0.398
Gapped
Lambda K H
0.267 0.0811 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 18,775,317
Number of extensions: 1142762
Number of successful extensions: 16522
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5099
Number of HSP's successfully gapped: 1038
Length of query: 1269
Length of database: 6,701,793
Length adjustment: 105
Effective length of query: 1164
Effective length of database: 3,770,088
Effective search space: 4388382432
Effective search space used: 4388382432
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (27.9 bits)