Query psy5673
Match_columns 119
No_of_seqs 27 out of 29
Neff 3.4
Searched_HMMs 46136
Date Fri Aug 16 23:42:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5673.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5673hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF11120 DUF2636: Protein of u 57.0 18 0.00039 24.5 3.4 21 75-95 16-36 (62)
2 PHA02099 hypothetical protein 55.9 5.6 0.00012 28.2 0.9 15 16-30 50-64 (84)
3 PF15225 IL32: Interleukin 32 44.7 77 0.0017 23.4 5.3 36 82-117 49-88 (104)
4 KOG0662|consensus 36.0 9.2 0.0002 32.1 -0.7 38 3-40 90-127 (292)
5 PF09868 DUF2095: Uncharacteri 30.6 26 0.00056 26.9 1.0 22 12-33 56-77 (128)
6 PF15326 TEX15: Testis express 29.3 70 0.0015 26.7 3.4 39 41-89 76-119 (233)
7 COG5185 HEC1 Protein involved 22.6 1.1E+02 0.0024 28.6 3.7 63 8-79 94-168 (622)
8 COG5319 Uncharacterized protei 22.1 1.4E+02 0.003 23.3 3.7 63 16-95 21-85 (142)
9 COG0328 RnhA Ribonuclease HI [ 21.9 3.5E+02 0.0075 20.9 5.8 82 23-113 51-147 (154)
10 PF09802 Sec66: Preprotein tra 21.8 64 0.0014 25.9 1.8 25 93-117 91-117 (190)
11 KOG3932|consensus 21.7 77 0.0017 27.8 2.4 26 65-90 191-217 (357)
12 PF15442 DUF4629: Domain of un 21.4 42 0.00092 26.2 0.7 12 77-88 130-141 (150)
13 cd06222 RnaseH RNase H (RNase 20.7 1.3E+02 0.0028 18.7 2.8 32 22-53 48-81 (130)
14 PF06135 DUF965: Bacterial pro 20.5 33 0.00071 24.3 -0.1 9 14-22 28-36 (79)
No 1
>PF11120 DUF2636: Protein of unknown function (DUF2636); InterPro: IPR019995 Members of this protein family are found invariably together with genes of bacterial cellulose biosynthesis, and are presumed to be involved in the process []. Members average about 63 amino acids in length and are not uncharacterised. The gene has been designated both YhjT and BcsF (bacterial cellulose synthesis F).
Probab=56.96 E-value=18 Score=24.48 Aligned_cols=21 Identities=24% Similarity=0.347 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy5673 75 VLTCIGICVYERLHKIQLKLR 95 (119)
Q Consensus 75 VLtClG~~l~eRL~~l~~rlr 95 (119)
|+.+||..+...+.++|+.+|
T Consensus 16 I~~pLGyl~~~~~~r~~~~lr 36 (62)
T PF11120_consen 16 IFFPLGYLARRWLPRIRRTLR 36 (62)
T ss_pred HHHhHHHHHHHHhHHHHHHHH
Confidence 567899999999999998887
No 2
>PHA02099 hypothetical protein
Probab=55.90 E-value=5.6 Score=28.25 Aligned_cols=15 Identities=33% Similarity=0.753 Sum_probs=13.0
Q ss_pred cccchhhhhhhhhhc
Q psy5673 16 EKGFVSSLYAGIRRC 30 (119)
Q Consensus 16 ekgY~~~ly~gi~~c 30 (119)
-.||+|+||+.+++-
T Consensus 50 a~gy~p~ly~e~~r~ 64 (84)
T PHA02099 50 AEGYNPDLYAELKRH 64 (84)
T ss_pred cCCCCHHHHHHHHHh
Confidence 469999999999874
No 3
>PF15225 IL32: Interleukin 32
Probab=44.67 E-value=77 Score=23.44 Aligned_cols=36 Identities=17% Similarity=0.131 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHhhhc
Q psy5673 82 CVYERLHKIQLKLREEQC---T-YQVLATVAIEALCRNFE 117 (119)
Q Consensus 82 ~l~eRL~~l~~rlr~ee~---t-~~~l~~~av~al~r~Fe 117 (119)
.+..|||.-|++.-+=.. + -.-.+-.||+|+++-||
T Consensus 49 amlqrLQ~ww~~vlAWVkk~va~~~~ALv~av~A~Wk~fq 88 (104)
T PF15225_consen 49 AMLQRLQTWWQAVLAWVKKMVAAGMQALVSAVQALWKEFQ 88 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 455677777776543211 1 11123458899999887
No 4
>KOG0662|consensus
Probab=35.95 E-value=9.2 Score=32.13 Aligned_cols=38 Identities=24% Similarity=0.461 Sum_probs=33.6
Q ss_pred hhhhhhccCCCCccccchhhhhhhhhhccccceeeecc
Q psy5673 3 AYTLLVEEKDPSKEKGFVSSLYAGIRRCLADKHIHLEL 40 (119)
Q Consensus 3 A~~lL~ge~~~~~ekgY~~~ly~gi~~c~~~~hihv~~ 40 (119)
-|+-|.|+.||.--+.|.-.|..|+.+|.+-+.+|-.-
T Consensus 90 yfdslng~~d~~~~rsfmlqllrgl~fchshnvlhrdl 127 (292)
T KOG0662|consen 90 YFDSLNGDLDPEIVRSFMLQLLRGLGFCHSHNVLHRDL 127 (292)
T ss_pred HHHhcCCcCCHHHHHHHHHHHHhhhhhhhhhhhhhccC
Confidence 37789999999999999999999999999988888654
No 5
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=30.64 E-value=26 Score=26.88 Aligned_cols=22 Identities=27% Similarity=0.646 Sum_probs=17.9
Q ss_pred CCCccccchhhhhhhhhhcccc
Q psy5673 12 DPSKEKGFVSSLYAGIRRCLAD 33 (119)
Q Consensus 12 ~~~~ekgY~~~ly~gi~~c~~~ 33 (119)
.+..=.||.|.+.+.|++|..+
T Consensus 56 ~~~~~sGy~PtViD~lrRC~T~ 77 (128)
T PF09868_consen 56 EPDDFSGYNPTVIDYLRRCKTD 77 (128)
T ss_pred cCCCccCCCChHHHHHHHhCcH
Confidence 3444589999999999999665
No 6
>PF15326 TEX15: Testis expressed sequence 15
Probab=29.31 E-value=70 Score=26.73 Aligned_cols=39 Identities=26% Similarity=0.423 Sum_probs=29.3
Q ss_pred cHHHHHHHHHhhchhhhhhhhhhhhhhHHHHHHHHHHHHHHH-----HHHHHHH
Q psy5673 41 RTEFIASLIARAEPELIGNRRERHAKTLEIAQEEVLTCIGIC-----VYERLHK 89 (119)
Q Consensus 41 ~tdyi~~LI~rA~pEl~g~~rERHAkT~eiAQeEVLtClG~~-----l~eRL~~ 89 (119)
++..|.+++.||+ +|-++.+.||+.+.|--+. -|||+|.
T Consensus 76 ~I~~lseIL~qAd----------e~asL~~LQelt~~C~~~L~~f~k~Fe~~Qe 119 (233)
T PF15326_consen 76 DICCLSEILDQAD----------EAASLKKLQELTLRCQNHLPIFKKYFERLQE 119 (233)
T ss_pred hHHHHHHHHHHHH----------hhccHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5667888887775 5677899999999997664 4566654
No 7
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=22.64 E-value=1.1e+02 Score=28.60 Aligned_cols=63 Identities=21% Similarity=0.326 Sum_probs=46.3
Q ss_pred hccCCCCccccchhh----hhhhhhhcccc-----ceeeecccHHHHH---HHHHhhchhhhhhhhhhhhhhHHHHHHHH
Q psy5673 8 VEEKDPSKEKGFVSS----LYAGIRRCLAD-----KHIHLELRTEFIA---SLIARAEPELIGNRRERHAKTLEIAQEEV 75 (119)
Q Consensus 8 ~ge~~~~~ekgY~~~----ly~gi~~c~~~-----~hihv~~~tdyi~---~LI~rA~pEl~g~~rERHAkT~eiAQeEV 75 (119)
..|+-|..||||... +|+.|.-.-=| +-+|-|+..+|+. +|-.|-+|.+-= .-| -.+||
T Consensus 94 ~~DpRplrdk~yqq~c~~~I~~yL~engfd~pis~k~l~~PS~k~F~~IFK~LY~~lDp~f~F--~~r-------~E~eV 164 (622)
T COG5185 94 NRDPRPLRDKNYQQACQEEIYDYLKENGFDIPISIKFLKQPSQKGFIIIFKWLYLRLDPGFGF--TKR-------IENEV 164 (622)
T ss_pred cCCCcccccchHHHHHHHHHHHHHHHcCCCcchhHHHhcCCccccHHHHHHHHHhccCCCCCc--chh-------hHHHH
Confidence 457888999999887 66666655333 6778999999985 789999995532 222 34789
Q ss_pred HHHH
Q psy5673 76 LTCI 79 (119)
Q Consensus 76 LtCl 79 (119)
.+||
T Consensus 165 ~~~l 168 (622)
T COG5185 165 YQIL 168 (622)
T ss_pred HHHH
Confidence 9885
No 8
>COG5319 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.10 E-value=1.4e+02 Score=23.29 Aligned_cols=63 Identities=21% Similarity=0.350 Sum_probs=40.1
Q ss_pred cccchhhhhhhhhhccccceeeecccHHHHHHHHHhhchhhhhhh--hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5673 16 EKGFVSSLYAGIRRCLADKHIHLELRTEFIASLIARAEPELIGNR--RERHAKTLEIAQEEVLTCIGICVYERLHKIQLK 93 (119)
Q Consensus 16 ekgY~~~ly~gi~~c~~~~hihv~~~tdyi~~LI~rA~pEl~g~~--rERHAkT~eiAQeEVLtClG~~l~eRL~~l~~r 93 (119)
.--|+...=.||--|+. |..+-+..+++ -|-++++| ..|-+-++..||+|.++ +|..+-+.
T Consensus 21 saDfd~Q~~rgLv~CPv-------Cgs~~VsK~lm--APavStaR~~~ar~~~~~~~a~ke~~a--------~~~~~~r~ 83 (142)
T COG5319 21 SADFDRQRERGLVTCPV-------CGSTEVSKLLM--APAVSTARKQEARQALAMDEAQKEALA--------KMREAVRH 83 (142)
T ss_pred chhHHHHHHcCceeCCC-------CCcHHHHHHhc--ccccchhhHHHHhhhhccHHHHHHHHH--------HHHHHHHH
Confidence 33466667777777864 33334444443 25677764 34678889999999998 55555555
Q ss_pred HH
Q psy5673 94 LR 95 (119)
Q Consensus 94 lr 95 (119)
+|
T Consensus 84 vr 85 (142)
T COG5319 84 VR 85 (142)
T ss_pred HH
Confidence 55
No 9
>COG0328 RnhA Ribonuclease HI [DNA replication, recombination, and repair]
Probab=21.93 E-value=3.5e+02 Score=20.89 Aligned_cols=82 Identities=17% Similarity=0.139 Sum_probs=54.2
Q ss_pred hhhhhhhcc--ccceeeecccHHHHHHHHHhhchhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Q psy5673 23 LYAGIRRCL--ADKHIHLELRTEFIASLIARAEPELIGNRRERHAKTLEIAQEEVLTCIGICVYERLHKIQLKL------ 94 (119)
Q Consensus 23 ly~gi~~c~--~~~hihv~~~tdyi~~LI~rA~pEl~g~~rERHAkT~eiAQeEVLtClG~~l~eRL~~l~~rl------ 94 (119)
+-++|+.+. ...-|-|-+|+.|+.+-|.+=-. +|+.+==+|.+ +.=| --.-+|+++..+-.+.
T Consensus 51 ~i~AL~~l~~~~~~~v~l~tDS~yv~~~i~~w~~----~w~~~~w~~~~--~~pv---kn~dl~~~~~~~~~~~~~v~~~ 121 (154)
T COG0328 51 LIEALEALKELGACEVTLYTDSKYVVEGITRWIV----KWKKNGWKTAD--KKPV---KNKDLWEELDELLKRHELVFWE 121 (154)
T ss_pred HHHHHHHHHhcCCceEEEEecHHHHHHHHHHHHh----hccccCccccc--cCcc---ccHHHHHHHHHHHhhCCeEEEE
Confidence 667899998 77889999999999999983311 22222222211 0000 0123567776666665
Q ss_pred -------HHHHHHHHHHHHHHHHHHH
Q psy5673 95 -------REEQCTYQVLATVAIEALC 113 (119)
Q Consensus 95 -------r~ee~t~~~l~~~av~al~ 113 (119)
+.+.+.++.|+..|+++-.
T Consensus 122 WVkgH~g~~~NeraD~LA~~~~~~~~ 147 (154)
T COG0328 122 WVKGHAGHPENERADQLAREAARAAK 147 (154)
T ss_pred EeeCCCCChHHHHHHHHHHHHHHhhh
Confidence 7899999999999988754
No 10
>PF09802 Sec66: Preprotein translocase subunit Sec66; InterPro: IPR018624 Members of this family of proteins are a component of the heterotetrameric Sec62/63 complex composed of SEC62, SEC63, SEC66 and SEC72. The Sec62/63 complex associates with the Sec61 complex to form the Sec complex. Sec 66 is involved in SRP-independent post-translational translocation across the endoplasmic reticulum and functions together with the Sec61 complex and KAR2 in a channel-forming translocon complex. Furthermore, Sec66 is also required for growth at elevated temperatures [, , , ].
Probab=21.75 E-value=64 Score=25.86 Aligned_cols=25 Identities=28% Similarity=0.406 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHH--HHHHhhhc
Q psy5673 93 KLREEQCTYQVLATVAI--EALCRNFE 117 (119)
Q Consensus 93 rlr~ee~t~~~l~~~av--~al~r~Fe 117 (119)
+||++++.++.|+-=|. |-++++|+
T Consensus 91 klre~k~~l~~L~q~GsIGDd~wqrf~ 117 (190)
T PF09802_consen 91 KLREDKPALNKLYQNGSIGDDLWQRFQ 117 (190)
T ss_pred HHHhhhHHHHHHHHCCCccHHHHHHHH
Confidence 66666666666665444 55666654
No 11
>KOG3932|consensus
Probab=21.66 E-value=77 Score=27.83 Aligned_cols=26 Identities=35% Similarity=0.613 Sum_probs=20.8
Q ss_pred hhhHHHHH-HHHHHHHHHHHHHHHHHH
Q psy5673 65 AKTLEIAQ-EEVLTCIGICVYERLHKI 90 (119)
Q Consensus 65 AkT~eiAQ-eEVLtClG~~l~eRL~~l 90 (119)
.||+.+|- -|+|-|||+.|.-|-+|+
T Consensus 191 kktIiQASTsELLrcLG~Fl~~rC~Rl 217 (357)
T KOG3932|consen 191 KKTIIQASTSELLRCLGIFLCRRCYRL 217 (357)
T ss_pred ceeEEeccHHHHHHHHHHHHHhhhhhh
Confidence 36666664 499999999999998865
No 12
>PF15442 DUF4629: Domain of unknown function (DUF4629)
Probab=21.40 E-value=42 Score=26.25 Aligned_cols=12 Identities=25% Similarity=0.877 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHH
Q psy5673 77 TCIGICVYERLH 88 (119)
Q Consensus 77 tClG~~l~eRL~ 88 (119)
|||||++.|=+|
T Consensus 130 s~LgMHMLeSVQ 141 (150)
T PF15442_consen 130 SCLGMHMLESVQ 141 (150)
T ss_pred cccchHHHHhHH
Confidence 799999988766
No 13
>cd06222 RnaseH RNase H (RNase HI) is an endonuclease that cleaves the RNA strand of an RNA/DNA hybrid in a not sequence-specific manner. One of the important functions of RNase H is to remove Okazaki fragments during DNA replication. RNase H knockout mice lack mitochondrial DNA replication and die as embryos. The retroviral reverse transcriptase contains an RNase H domain that plays an important role in converting a single stranded retroviral genomic RNA into a dsDNA for integration into host chromosomes. RNase H inhibitors have been explored as an anti-HIV drug target because RNase H inactivation inhibits reverse transcription.
Probab=20.72 E-value=1.3e+02 Score=18.69 Aligned_cols=32 Identities=9% Similarity=0.252 Sum_probs=26.8
Q ss_pred hhhhhhhhc--cccceeeecccHHHHHHHHHhhc
Q psy5673 22 SLYAGIRRC--LADKHIHLELRTEFIASLIARAE 53 (119)
Q Consensus 22 ~ly~gi~~c--~~~~hihv~~~tdyi~~LI~rA~ 53 (119)
.|+.||+.+ ...+.|.|.+|..++..++..-.
T Consensus 48 al~~al~~~~~~~~~~i~i~~Ds~~~~~~~~~~~ 81 (130)
T cd06222 48 ALIEALELALELGGKKVNIYTDSQYVINALTGWY 81 (130)
T ss_pred HHHHHHHHHHhCCCceEEEEECHHHHHHHhhccc
Confidence 378899998 66799999999999999888754
No 14
>PF06135 DUF965: Bacterial protein of unknown function (DUF965); InterPro: IPR009309 This family consists of several hypothetical bacterial proteins. The function of the family is unknown.
Probab=20.52 E-value=33 Score=24.33 Aligned_cols=9 Identities=33% Similarity=0.519 Sum_probs=7.9
Q ss_pred Cccccchhh
Q psy5673 14 SKEKGFVSS 22 (119)
Q Consensus 14 ~~ekgY~~~ 22 (119)
.+||||.|.
T Consensus 28 L~EKGYnPi 36 (79)
T PF06135_consen 28 LEEKGYNPI 36 (79)
T ss_pred HHHcCCChH
Confidence 689999997
Done!