Query psy5673
Match_columns 119
No_of_seqs 27 out of 29
Neff 3.4
Searched_HMMs 29240
Date Fri Aug 16 23:42:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5673.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5673hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2j7u_A RNA dependent RNA polym 37.5 35 0.0012 30.8 4.5 75 3-79 412-500 (635)
2 2hcn_A RNA-directed RNA polyme 36.2 35 0.0012 30.6 4.2 75 3-79 372-460 (595)
3 2kij_A Copper-transporting ATP 24.7 14 0.00048 25.4 -0.2 21 5-27 72-93 (124)
4 2hc8_A PACS, cation-transporti 22.0 16 0.00055 24.8 -0.4 22 5-28 60-82 (113)
5 1h3o_A Transcription initiatio 20.0 93 0.0032 20.6 3.1 22 73-94 26-47 (75)
6 1j2m_A CPI-17, 17-kDa PKC-pote 19.6 66 0.0022 22.6 2.4 31 16-53 65-95 (99)
7 1z8u_A Alpha-hemoglobin stabil 19.0 94 0.0032 22.0 3.1 29 42-75 42-70 (102)
8 3lvg_D LCB, clathrin light cha 16.8 75 0.0026 24.7 2.3 18 51-68 81-98 (190)
9 3twe_A Alpha4H; unknown functi 15.4 83 0.0028 17.3 1.6 13 84-96 14-26 (27)
10 2pof_A CDP-diacylglycerol pyro 14.6 65 0.0022 25.4 1.5 29 32-60 113-141 (227)
No 1
>2j7u_A RNA dependent RNA polymerase; nucleoside binding site, flavivirus, high-throughput assay, protein; HET: PGE; 1.85A {Dengue virus} PDB: 2j7w_A*
Probab=37.53 E-value=35 Score=30.81 Aligned_cols=75 Identities=17% Similarity=0.178 Sum_probs=54.2
Q ss_pred hhhhhhccCCCCcccc-chhh----hhhhhhhc---------cccceeeecccHHHHHHHHHhhchhhhhhhhhhhhhhH
Q psy5673 3 AYTLLVEEKDPSKEKG-FVSS----LYAGIRRC---------LADKHIHLELRTEFIASLIARAEPELIGNRRERHAKTL 68 (119)
Q Consensus 3 A~~lL~ge~~~~~ekg-Y~~~----ly~gi~~c---------~~~~hihv~~~tdyi~~LI~rA~pEl~g~~rERHAkT~ 68 (119)
|...|..-..+.|+.+ +.|+ =++.+.+| ...+.|.|||... ++||+||.--.=++|..|+..-+
T Consensus 412 aL~~Ln~m~K~RKdi~~~~pS~~~~~we~V~FCShhfh~l~~kDGr~~~vpcR~q--dEligRarvs~G~~~~~r~Tacl 489 (635)
T 2j7u_A 412 ALLALNDMGKVRKDIPQWQPSKGWHDWQQVPFCSHHFHELIMKDGRKLVVPCRPQ--DELIGRARISQGAGWSLRETACL 489 (635)
T ss_dssp CCHHHHHTTCCBTTSCTTSCCCCBSCGGGCCBTTBEEEEEECTTSCEEEEEECCH--HHHHHHHTEESSSCCCHHHHHHH
T ss_pred HHHHHHHhcccccccccCCCCcccCcccccceecCCcceEEEeCCCEEEeeccCH--HHhhhhhhcCCCCCcchhhhHHH
Confidence 4455666666777777 6666 46778888 3458899999332 48999999888788899988888
Q ss_pred HHHHHHHHHHH
Q psy5673 69 EIAQEEVLTCI 79 (119)
Q Consensus 69 eiAQeEVLtCl 79 (119)
++|.--...++
T Consensus 490 aKAyAqmwlL~ 500 (635)
T 2j7u_A 490 GKAYAQMWSLM 500 (635)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88876655443
No 2
>2hcn_A RNA-directed RNA polymerase (NS5); WEST-NIle virus RNA polymerase, structural genomics, marseil structural genomics program @ AFMB, MSGP, vizier; 2.35A {Kunjin virus} PDB: 2hcs_A 2hfz_A
Probab=36.23 E-value=35 Score=30.63 Aligned_cols=75 Identities=13% Similarity=0.149 Sum_probs=50.3
Q ss_pred hhhhhhccCCCCcccc-chhh----hhhhhhhc---------cccceeeecccHHHHHHHHHhhchhhhhhhhhhhhhhH
Q psy5673 3 AYTLLVEEKDPSKEKG-FVSS----LYAGIRRC---------LADKHIHLELRTEFIASLIARAEPELIGNRRERHAKTL 68 (119)
Q Consensus 3 A~~lL~ge~~~~~ekg-Y~~~----ly~gi~~c---------~~~~hihv~~~tdyi~~LI~rA~pEl~g~~rERHAkT~ 68 (119)
|...|..-..+.|+.+ +.|+ =++.+.+| ...+.|.|||... ++||+||.--.=++|..|...-+
T Consensus 372 aL~~Ln~m~K~RKdi~~~~pS~~~~~we~V~FCShhfh~l~~kDGr~~vvPcR~q--dEligRarvs~G~~~~~r~Tacl 449 (595)
T 2hcn_A 372 SLHFLNAMSKVRKDIQEWKPSTGWYDWQQVPFCSNHFTELIMKDGRTLVTPCRGQ--DELVGRARISPGAGWNVRDTACL 449 (595)
T ss_dssp CCHHHHHTTCCBTTSCTTSCCCCBSCTTTCCBTTBEEEEEECTTSCEEEEEECCH--HHHHHHHTBCC----CCHHHHHH
T ss_pred HHHHHHHhcccccccccCCCCcccCcccccceecCCcceEEEeCCCEEEeeccCH--HHhhhhhhcCCCCCcchhhhHHH
Confidence 3445555666677776 6665 46777788 3458899999332 48999999888888899988888
Q ss_pred HHHHHHHHHHH
Q psy5673 69 EIAQEEVLTCI 79 (119)
Q Consensus 69 eiAQeEVLtCl 79 (119)
++|.--...++
T Consensus 450 aKAyAqMwlL~ 460 (595)
T 2hcn_A 450 AKSYAQMWLLL 460 (595)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88776555443
No 3
>2kij_A Copper-transporting ATPase 1; actuator, menkes disease, alternative splicing, ATP-binding, cell membrane, cytoplasm, disease mutation; NMR {Homo sapiens}
Probab=24.71 E-value=14 Score=25.43 Aligned_cols=21 Identities=38% Similarity=0.616 Sum_probs=14.6
Q ss_pred hhhhccCCC-Cccccchhhhhhhh
Q psy5673 5 TLLVEEKDP-SKEKGFVSSLYAGI 27 (119)
Q Consensus 5 ~lL~ge~~~-~~ekgY~~~ly~gi 27 (119)
+.||||+.| .|..| ..+|.|=
T Consensus 72 S~LTGEs~pv~k~~g--~~v~aGt 93 (124)
T 2kij_A 72 SLITGEAMPVAKKPG--STVIAGS 93 (124)
T ss_dssp TTTTCCSSCEECCTT--EEECTTC
T ss_pred ccccCCCccEEeCCC--CEEEcCC
Confidence 679999998 34444 4577764
No 4
>2hc8_A PACS, cation-transporting ATPase, P-type; copper, COPA, COPB, actuator, transport protein; 1.65A {Archaeoglobus fulgidus} PDB: 2voy_F
Probab=21.96 E-value=16 Score=24.81 Aligned_cols=22 Identities=23% Similarity=0.468 Sum_probs=14.4
Q ss_pred hhhhccCCCC-ccccchhhhhhhhh
Q psy5673 5 TLLVEEKDPS-KEKGFVSSLYAGIR 28 (119)
Q Consensus 5 ~lL~ge~~~~-~ekgY~~~ly~gi~ 28 (119)
+.||||+.|- |..| ..+|.|=.
T Consensus 60 S~LTGEs~pv~k~~g--~~v~aGt~ 82 (113)
T 2hc8_A 60 SMISGEPVPVLKSKG--DEVFGATI 82 (113)
T ss_dssp HHHHCCSSCEEECTT--CEECTTCE
T ss_pred cccCCCCccEEECCC--CEEEeCCE
Confidence 5799999983 3333 45666643
No 5
>1h3o_A Transcription initiation factor TFIID 135 kDa subunit; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=19.99 E-value=93 Score=20.61 Aligned_cols=22 Identities=18% Similarity=0.386 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy5673 73 EEVLTCIGICVYERLHKIQLKL 94 (119)
Q Consensus 73 eEVLtClG~~l~eRL~~l~~rl 94 (119)
.+|+-|+-++.=|||+.+--|+
T Consensus 26 ~dv~~~iS~a~qeRLr~llekl 47 (75)
T 1h3o_A 26 PDVVSYVSHATQQRLQNLVEKI 47 (75)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhHHHHHHHHHHHHHHH
Confidence 5899999999999999998765
No 6
>1j2m_A CPI-17, 17-kDa PKC-potentiated inhibitory protein of PP1; helix bundle, protein binding; NMR {Sus scrofa} SCOP: a.165.1.1 PDB: 2rlt_A* 1j2n_A 1k5o_A
Probab=19.63 E-value=66 Score=22.61 Aligned_cols=31 Identities=13% Similarity=0.329 Sum_probs=22.8
Q ss_pred cccchhhhhhhhhhccccceeeecccHHHHHHHHHhhc
Q psy5673 16 EKGFVSSLYAGIRRCLADKHIHLELRTEFIASLIARAE 53 (119)
Q Consensus 16 ekgY~~~ly~gi~~c~~~~hihv~~~tdyi~~LI~rA~ 53 (119)
|..=..-|.+-|+-|+. |++ +||.+|++|..
T Consensus 65 deeR~~~LqelL~~C~~------ptE-~FI~eLL~rlk 95 (99)
T 1j2m_A 65 EEERSRKIQGLLKSCTN------PTE-NFVQELLVKLR 95 (99)
T ss_dssp TTHHHHHHHHHHHTTSC------CCH-HHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCC------CHH-HHHHHHHHHHH
Confidence 33334558888888976 444 99999999875
No 7
>1z8u_A Alpha-hemoglobin stabilizing protein; alpha haemoglobin, AHSP, oxidation, interaction, electron transport; HET: HEM; 2.40A {Homo sapiens} SCOP: a.7.11.1 PDB: 1y01_A* 1w0b_A 3ovu_A* 1w09_A 1w0a_A 3ia3_A* 1xzy_A
Probab=18.95 E-value=94 Score=21.97 Aligned_cols=29 Identities=21% Similarity=0.384 Sum_probs=24.2
Q ss_pred HHHHHHHHHhhchhhhhhhhhhhhhhHHHHHHHH
Q psy5673 42 TEFIASLIARAEPELIGNRRERHAKTLEIAQEEV 75 (119)
Q Consensus 42 tdyi~~LI~rA~pEl~g~~rERHAkT~eiAQeEV 75 (119)
.|++.--|+.=.+-++|...|+ |.|++|+
T Consensus 42 ~DWvnfYinyy~~~~~GeqqEq-----drAlqel 70 (102)
T 1z8u_A 42 EDWMNFYINYYRQQVTGEPQER-----DKALQEL 70 (102)
T ss_dssp HHHHHHHHHHHTTTCCSCHHHH-----HHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccHHHH-----HHHHHHH
Confidence 4788888999999999998888 7777663
No 8
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus}
Probab=16.75 E-value=75 Score=24.71 Aligned_cols=18 Identities=44% Similarity=0.571 Sum_probs=14.7
Q ss_pred hhchhhhhhhhhhhhhhH
Q psy5673 51 RAEPELIGNRRERHAKTL 68 (119)
Q Consensus 51 rA~pEl~g~~rERHAkT~ 68 (119)
+.+||.+..|||+.++-+
T Consensus 81 eEEPEsIRKWREEQkkRL 98 (190)
T 3lvg_D 81 TQEPESIRKWREEQRKRL 98 (190)
T ss_dssp TTSTTHHHHHHHHHTTTS
T ss_pred ccCchHHHHHHHHHHHHH
Confidence 678999999999877654
No 9
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=15.36 E-value=83 Score=17.33 Aligned_cols=13 Identities=54% Similarity=0.736 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHH
Q psy5673 84 YERLHKIQLKLRE 96 (119)
Q Consensus 84 ~eRL~~l~~rlr~ 96 (119)
-|||.++-.|+|+
T Consensus 14 qerlrklrkklrs 26 (27)
T 3twe_A 14 QERLRKLRKKLRS 26 (27)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcC
Confidence 4566666666653
No 10
>2pof_A CDP-diacylglycerol pyrophosphatase; NYSGXRC, PFAM02611, PSI-2, phospholipid biosynthesis structural genomics, protein structure initiative; 1.40A {Escherichia coli} SCOP: d.13.1.4
Probab=14.64 E-value=65 Score=25.40 Aligned_cols=29 Identities=10% Similarity=0.103 Sum_probs=20.1
Q ss_pred ccceeeecccHHHHHHHHHhhchhhhhhh
Q psy5673 32 ADKHIHLELRTEFIASLIARAEPELIGNR 60 (119)
Q Consensus 32 ~~~hihv~~~tdyi~~LI~rA~pEl~g~~ 60 (119)
.-=|||++|-..-+..-+....|.+-..|
T Consensus 113 nQLHIHIsClrp~V~~~L~~~~~~i~~~W 141 (227)
T 2pof_A 113 NHFHIHISCIRPDVREQLDNNLANISSRW 141 (227)
T ss_dssp CSCCEEEEEBCHHHHHHHHTTGGGCCSSC
T ss_pred cceeeehhhCCHHHHHHHHHhccccCCCc
Confidence 33599999977667666666666655555
Done!