Query psy5673
Match_columns 119
No_of_seqs 27 out of 29
Neff 3.4
Searched_HMMs 13730
Date Fri Aug 16 23:42:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5673.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/5673hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1z8ua1 a.7.11.1 (A:2-91) Alph 22.2 35 0.0026 22.1 3.1 28 42-74 41-68 (90)
2 d2pofa1 d.13.1.4 (A:31-250) CD 17.7 25 0.0018 25.8 1.7 29 32-60 107-135 (220)
3 d1unld_ a.74.1.1 (D:) CDK5 act 14.0 46 0.0033 23.2 2.2 17 73-89 5-21 (150)
4 d1efub4 d.43.1.1 (B:55-139) El 14.0 26 0.0019 21.6 0.8 12 35-46 18-29 (85)
5 d1h3oa_ a.22.1.3 (A:) TAF(II)- 13.6 86 0.0063 18.1 3.1 22 74-95 27-48 (50)
6 d1allb_ a.1.1.3 (B:) Allophyco 11.9 95 0.0069 20.9 3.4 27 3-29 93-121 (161)
7 d1jkva_ a.25.1.3 (A:) Manganes 11.2 2.8E+02 0.02 20.1 6.4 39 78-116 149-196 (266)
8 d1xb2b2 d.43.1.1 (B:112-222) E 11.0 36 0.0026 21.4 0.8 12 35-46 20-31 (111)
9 d1dl0a_ g.3.6.2 (A:) J-atracot 10.2 22 0.0016 19.5 -0.5 15 20-34 22-36 (37)
10 d1j2na_ a.165.1.1 (A:) Myosin 9.6 81 0.0059 20.4 2.2 24 23-53 72-95 (99)
No 1
>d1z8ua1 a.7.11.1 (A:2-91) Alpha-hemoglobin stabilizing protein AHSP {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.22 E-value=35 Score=22.06 Aligned_cols=28 Identities=21% Similarity=0.376 Sum_probs=24.1
Q ss_pred HHHHHHHHHhhchhhhhhhhhhhhhhHHHHHHH
Q psy5673 42 TEFIASLIARAEPELIGNRRERHAKTLEIAQEE 74 (119)
Q Consensus 42 tdyi~~LI~rA~pEl~g~~rERHAkT~eiAQeE 74 (119)
.|+|.--|+.=.|-+.|.+.|| |.|++|
T Consensus 41 ~DWvn~Yinyy~~~~~GeqqEq-----drA~~e 68 (90)
T d1z8ua1 41 EDWMNFYINYYRQQVTGEPQER-----DKALQE 68 (90)
T ss_dssp HHHHHHHHHHHTTTCCSCHHHH-----HHHHHH
T ss_pred HHHHHHHHHHHHHHccCChHHH-----HHHHHH
Confidence 4788888999999999999888 777766
No 2
>d2pofa1 d.13.1.4 (A:31-250) CDP-diacylglycerol pyrophosphatase CDH {Escherichia coli [TaxId: 562]}
Probab=17.74 E-value=25 Score=25.81 Aligned_cols=29 Identities=10% Similarity=0.103 Sum_probs=19.5
Q ss_pred ccceeeecccHHHHHHHHHhhchhhhhhh
Q psy5673 32 ADKHIHLELRTEFIASLIARAEPELIGNR 60 (119)
Q Consensus 32 ~~~hihv~~~tdyi~~LI~rA~pEl~g~~ 60 (119)
.-=|||++|-..-+..-+.+-.+.+-+.|
T Consensus 107 dQLHIHI~Clrp~v~~~L~~~~~~~~~~W 135 (220)
T d2pofa1 107 NHFHIHISCIRPDVREQLDNNLANISSRW 135 (220)
T ss_dssp CSCCEEEEEBCHHHHHHHHTTGGGCCSSC
T ss_pred cceeeehhhCCHHHHHHHHHhcccccCCc
Confidence 34599999966666666666655555555
No 3
>d1unld_ a.74.1.1 (D:) CDK5 activator 1 (NCK5a, p25) {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.99 E-value=46 Score=23.25 Aligned_cols=17 Identities=29% Similarity=0.632 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy5673 73 EEVLTCIGICVYERLHK 89 (119)
Q Consensus 73 eEVLtClG~~l~eRL~~ 89 (119)
.|.|-|||..+..|=.+
T Consensus 5 sElLkcLG~fl~~rC~~ 21 (150)
T d1unld_ 5 SELLRCLGEFLCRRCYR 21 (150)
T ss_dssp HHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 48999999999998644
No 4
>d1efub4 d.43.1.1 (B:55-139) Elongation factor Ts (EF-Ts), dimerisation domain {Escherichia coli [TaxId: 562]}
Probab=13.96 E-value=26 Score=21.60 Aligned_cols=12 Identities=25% Similarity=0.595 Sum_probs=10.1
Q ss_pred eeeecccHHHHH
Q psy5673 35 HIHLELRTEFIA 46 (119)
Q Consensus 35 hihv~~~tdyi~ 46 (119)
-|.|.|+|||.+
T Consensus 18 ivEvncETDFVA 29 (85)
T d1efub4 18 ILEVNCQTDFVA 29 (85)
T ss_dssp EEEEEESCHHHH
T ss_pred EEEEeccCcchh
Confidence 478999999975
No 5
>d1h3oa_ a.22.1.3 (A:) TAF(II)-135, (TAF(II)-130, hTAF4), histone fold domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.56 E-value=86 Score=18.08 Aligned_cols=22 Identities=18% Similarity=0.391 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy5673 74 EVLTCIGICVYERLHKIQLKLR 95 (119)
Q Consensus 74 EVLtClG~~l~eRL~~l~~rlr 95 (119)
||++.+..-.-|||+++-.|+-
T Consensus 27 dV~~lISHA~QeRLk~lvEKls 48 (50)
T d1h3oa_ 27 DVVSYVSHATQQRLQNLVEKIS 48 (50)
T ss_dssp THHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 7999999999999999988774
No 6
>d1allb_ a.1.1.3 (B:) Allophycocyanin beta subunit {Spirulina platensis [TaxId: 118562]}
Probab=11.87 E-value=95 Score=20.85 Aligned_cols=27 Identities=15% Similarity=0.246 Sum_probs=20.4
Q ss_pred hhhhhhccCCCCcccc--chhhhhhhhhh
Q psy5673 3 AYTLLVEEKDPSKEKG--FVSSLYAGIRR 29 (119)
Q Consensus 3 A~~lL~ge~~~~~ekg--Y~~~ly~gi~~ 29 (119)
.|.++.|+++|..+.| ....+|+-+..
T Consensus 93 tYaivaGd~~~l~~~~l~glrE~y~~L~v 121 (161)
T d1allb_ 93 TYAMLAGDPSILDERVLNGLKETYNSLGV 121 (161)
T ss_dssp HHHHHHTCSHHHHHHTTTTHHHHHHHHTC
T ss_pred HHHHHcCCCccccHHHHHHHHHHHHHhCC
Confidence 5889999999988876 44567776653
No 7
>d1jkva_ a.25.1.3 (A:) Manganese catalase (T-catalase) {Lactobacillus plantarum [TaxId: 1590]}
Probab=11.17 E-value=2.8e+02 Score=20.14 Aligned_cols=39 Identities=18% Similarity=0.069 Sum_probs=33.5
Q ss_pred HHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy5673 78 CIGICVYERL---------HKIQLKLREEQCTYQVLATVAIEALCRNF 116 (119)
Q Consensus 78 ClG~~l~eRL---------~~l~~rlr~ee~t~~~l~~~av~al~r~F 116 (119)
|=++..|+|| +++-.+|+..|.+++-.+.-|++.|.-+|
T Consensus 149 ~~Ar~~Y~rl~~~tdDp~vk~~L~fL~~rE~~H~~~f~~aLe~l~~~~ 196 (266)
T d1jkva_ 149 SEARLQVSRLYSMTEDEGVRDMLKFLLARETQHQLQFMKAQEELEEKY 196 (266)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 4577788886 67888999999999999999999998775
No 8
>d1xb2b2 d.43.1.1 (B:112-222) Elongation factor Ts (EF-Ts), dimerisation domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}
Probab=10.96 E-value=36 Score=21.42 Aligned_cols=12 Identities=17% Similarity=0.545 Sum_probs=10.1
Q ss_pred eeeecccHHHHH
Q psy5673 35 HIHLELRTEFIA 46 (119)
Q Consensus 35 hihv~~~tdyi~ 46 (119)
-|-|.|+|||.+
T Consensus 20 ivElNcETDFVA 31 (111)
T d1xb2b2 20 LVEVNCETDFVS 31 (111)
T ss_dssp EEEEEESCHHHH
T ss_pred EEEEecccchhh
Confidence 478999999975
No 9
>d1dl0a_ g.3.6.2 (A:) J-atracotoxin-hv1c {Australian funnel-web spider (Hadronyche versuta) [TaxId: 6904]}
Probab=10.21 E-value=22 Score=19.53 Aligned_cols=15 Identities=20% Similarity=0.417 Sum_probs=10.3
Q ss_pred hhhhhhhhhhccccc
Q psy5673 20 VSSLYAGIRRCLADK 34 (119)
Q Consensus 20 ~~~ly~gi~~c~~~~ 34 (119)
+..--+|++||+.|.
T Consensus 22 ckaesngvsycrkde 36 (37)
T d1dl0a_ 22 CKAESNGVSYCRKDE 36 (37)
T ss_dssp EEECTTSCEEEEECC
T ss_pred eecccCCcceeccCC
Confidence 334458899998763
No 10
>d1j2na_ a.165.1.1 (A:) Myosin phosphatase inhibitor 17kDa protein, CPI-17 {Pig (Sus scrofa) [TaxId: 9823]}
Probab=9.60 E-value=81 Score=20.38 Aligned_cols=24 Identities=13% Similarity=0.445 Sum_probs=0.0
Q ss_pred hhhhhhhccccceeeecccHHHHHHHHHhhc
Q psy5673 23 LYAGIRRCLADKHIHLELRTEFIASLIARAE 53 (119)
Q Consensus 23 ly~gi~~c~~~~hihv~~~tdyi~~LI~rA~ 53 (119)
|.+.|..|..-.. +||..|++|..
T Consensus 72 lq~lL~~c~kPtE-------~FI~eLL~klr 95 (99)
T d1j2na_ 72 IQGLLKSCTNPTE-------NFVQELLVKLR 95 (99)
T ss_dssp HHHHHTSSSSCSH-------HHHHHHHHHTS
T ss_pred HHHHHHhcCCChH-------HHHHHHHHHHH
Done!