RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5673
(119 letters)
>gnl|CDD|235085 PRK02910, PRK02910, light-independent protochlorophyllide reductase
subunit B; Provisional.
Length = 519
Score = 29.8 bits (68), Expect = 0.32
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 45 IASLIARAEPELI-GNRRERH-AKTLEI 70
+ IA A PEL+ G + ERH AK L I
Sbjct: 354 VEDAIAEAAPELVLGTQMERHSAKRLGI 381
>gnl|CDD|129200 TIGR00092, TIGR00092, GTP-binding protein YchF. This predicted
GTP-binding protein is found in a single copy in every
complete bacterial genome, and is found in Eukaryotes. A
more distantly related protein, separated from this
model, is found in the archaea. It is known to bind GTP
and double-stranded nucleic acid. It is suggested to
belong to a nucleoprotein complex and act as a
translation factor [Unknown function, General].
Length = 368
Score = 28.2 bits (63), Expect = 1.1
Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 10/67 (14%)
Query: 20 VSSLYAGIRRCLADKHIHLELRT-------EFIASLIARAEPELIGNRRERHAKTLE--- 69
+ + RC D IH E I + +A+ L+ R R K+ E
Sbjct: 97 EVDIIQHVVRCFEDDIIHHVGNVDDPRDDFEIIDEELLKADEFLVEKRIGRSKKSAEGGK 156
Query: 70 IAQEEVL 76
+EE+L
Sbjct: 157 DKKEELL 163
>gnl|CDD|233339 TIGR01278, DPOR_BchB, light-independent protochlorophyllide
reductase, B subunit. Alternate name: dark
protochlorophyllide reductase This enzyme describes the
B subunit of the dark form protochlorophyllide
reductase, a nitrogenase-like enzyme. This subunit shows
homology to the nitrogenase molybdenum-iron protein. It
catalyzes a step in bacteriochlorophyll biosynthesis
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Chlorophyll and bacteriochlorphyll].
Length = 511
Score = 27.5 bits (61), Expect = 1.8
Identities = 15/28 (53%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Query: 45 IASLIARAEPELI-GNRRERH-AKTLEI 70
+A IA EPEL+ G + ERH AK L+I
Sbjct: 356 VADAIAALEPELVLGTQMERHSAKRLDI 383
>gnl|CDD|214355 CHL00076, chlB, photochlorophyllide reductase subunit B.
Length = 513
Score = 27.3 bits (61), Expect = 2.0
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 45 IASLIARAEPELI-GNRRERH-AKTLEI 70
+ +IAR EP I G + ERH K L+I
Sbjct: 366 VGDMIARVEPSAIFGTQMERHIGKRLDI 393
>gnl|CDD|112826 pfam04027, DUF371, Domain of unknown function (DUF371). Archaeal
domain of unknown function.
Length = 132
Score = 26.4 bits (59), Expect = 2.3
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 59 NRRERHAKTLEIAQEEVLTCIGICV 83
N H T EI +++ LT G C+
Sbjct: 8 NVTATHRSTFEITKDDYLTPTGDCI 32
>gnl|CDD|215509 PLN02943, PLN02943, aminoacyl-tRNA ligase.
Length = 958
Score = 26.1 bits (57), Expect = 6.1
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 48 LIARAEPELIGNRRERHAKTLEIAQE 73
++AR+ E + RE++ K +EI Q+
Sbjct: 478 IVARSAEEALEKAREKYGKDVEIYQD 503
>gnl|CDD|215477 PLN02882, PLN02882, aminoacyl-tRNA ligase.
Length = 1159
Score = 25.8 bits (57), Expect = 6.6
Identities = 19/62 (30%), Positives = 21/62 (33%), Gaps = 12/62 (19%)
Query: 19 FVSSLYAGIRRCLADKH--IH-LELRTEFIASLIARAEP---------ELIGNRRERHAK 66
F LY +R+ L IH L R E EL N RERH K
Sbjct: 791 FTEVLYQNLRKVLPGSEESIHYCSFPQVDEGELDERIEQSVSRMQTVIELARNIRERHNK 850
Query: 67 TL 68
L
Sbjct: 851 PL 852
>gnl|CDD|223058 PHA03366, PHA03366, FGAM-synthase; Provisional.
Length = 1304
Score = 25.8 bits (57), Expect = 7.4
Identities = 7/30 (23%), Positives = 10/30 (33%)
Query: 90 IQLKLREEQCTYQVLATVAIEALCRNFEVS 119
+ +LR + TV F VS
Sbjct: 928 VLTRLRSRNIICYPIGTVGPSGPSNTFSVS 957
>gnl|CDD|238939 cd01981, Pchlide_reductase_B, Pchlide_reductase_B: B protein of the
NB protein complex of Protochlorophyllide
(Pchlide)_reductase. Pchlide reductase catalyzes the
reductive formation of chlorophyllide (chlide) from
protochlorophyllide (pchlide) during biosynthesis of
chlorophylls and bacteriochlorophylls. This group
contains both the light-independent Pchlide reductase
(DPOR) and light-dependent Pchlide reductase (LPOR).
Angiosperms contain only LPOR, cyanobacteria, algae and
gymnosperms contain both DPOR and LPOR, primitive
anoxygenic photosynthetic bacteria contain only DPOR. NB
is structurally similar to the FeMo protein of
nitrogenase, forming an N2B2 heterotetramer. N and B are
homologous to the FeMo alpha and beta subunits
respectively. Also in common with nitrogenase in vitro
DPOR activity requires ATP hydrolysis and dithoionite or
ferredoxin as electron donor. The NB protein complex may
serve as a catalytic site for Pchlide reduction similar
to MoFe for nitrogen reduction.
Length = 430
Score = 25.4 bits (56), Expect = 9.1
Identities = 15/28 (53%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Query: 45 IASLIARAEPELI-GNRRERH-AKTLEI 70
+ +IAR EPELI G + ERH K L+I
Sbjct: 362 VGDMIARTEPELIFGTQMERHIGKRLDI 389
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.136 0.388
Gapped
Lambda K H
0.267 0.0804 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,006,516
Number of extensions: 530642
Number of successful extensions: 388
Number of sequences better than 10.0: 1
Number of HSP's gapped: 388
Number of HSP's successfully gapped: 22
Length of query: 119
Length of database: 10,937,602
Length adjustment: 82
Effective length of query: 37
Effective length of database: 7,300,574
Effective search space: 270121238
Effective search space used: 270121238
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (24.1 bits)