RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy5673
         (119 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 31.2 bits (70), Expect = 0.065
 Identities = 23/136 (16%), Positives = 36/136 (26%), Gaps = 44/136 (32%)

Query: 7   LVEEKDPSKEKGFVSSLYAGI----RRCLADKHIHLELRTEFIASLIARAEPEL------ 56
           +    +PSK   F   L   +       L    IH        A L+   +  L      
Sbjct: 68  VSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHA-----LAAKLLQENDTTLVKTKEL 122

Query: 57  ---------IGNR---RERHAKTLEIAQEEVLTCIGIC-------VY--ERLHKIQLKLR 95
                    +  R   ++ ++       E     + I         Y  E        LR
Sbjct: 123 IKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEE--------LR 174

Query: 96  EEQCTYQVLATVAIEA 111
           +   TY VL    I+ 
Sbjct: 175 DLYQTYHVLVGDLIKF 190



 Score = 30.8 bits (69), Expect = 0.080
 Identities = 26/124 (20%), Positives = 42/124 (33%), Gaps = 26/124 (20%)

Query: 4   YTLLVEEKDPS---------KEKGFVSSLYAGIRRCLADKHIH--LELRTEFIASLIARA 52
           + LLV    P+         +E+ F   L        AD       EL  +F+  + +  
Sbjct: 18  HVLLV----PTASFFIASQLQEQ-FNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLV 72

Query: 53  EPELIGNRRERHAKTLEIAQEEVLTCIGICVYERLHKIQLKLREEQCTYQVLATVAIEAL 112
           EP  +G   +     L   +   L    I      H +  KL +E  T      V  + L
Sbjct: 73  EPSKVGQFDQVLNLCLTEFENCYLEGNDI------HALAAKLLQENDT----TLVKTKEL 122

Query: 113 CRNF 116
            +N+
Sbjct: 123 IKNY 126


>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
           vesicle, membrane, Ca structural protein; 7.94A {Bos
           taurus}
          Length = 190

 Score = 29.7 bits (66), Expect = 0.14
 Identities = 8/25 (32%), Positives = 9/25 (36%)

Query: 50  ARAEPELIGNRRERHAKTLEIAQEE 74
              EPE I   RE   K L+     
Sbjct: 80  LTQEPESIRKWREEQRKRLQELDAA 104


>3cbn_A Conserved protein MTH639; RP-A, PSI-II, NYSGXRC, structural
          genomics, protein initiative; 1.63A
          {Methanothermobacter thermautotrophicusorganism_taxid}
          Length = 151

 Score = 28.4 bits (63), Expect = 0.39
 Identities = 5/25 (20%), Positives = 9/25 (36%)

Query: 59 NRRERHAKTLEIAQEEVLTCIGICV 83
          N    H  T E+  +  +     C+
Sbjct: 17 NVTAGHRTTFEVTVDPEIGETADCI 41


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 26.4 bits (57), Expect = 3.3
 Identities = 10/49 (20%), Positives = 16/49 (32%), Gaps = 6/49 (12%)

Query: 23  LYAGIRRCLADKHIHLELRTEFIASLIARAEPELIGNRRERHAKTLEIA 71
            Y   +  + D     E     I   + + E  LI     ++   L IA
Sbjct: 529 FY---KPYICDNDPKYERLVNAILDFLPKIEENLI---CSKYTDLLRIA 571



 Score = 25.2 bits (54), Expect = 8.3
 Identities = 8/46 (17%), Positives = 18/46 (39%), Gaps = 9/46 (19%)

Query: 53  EPELIGNRRERHAKTLEIAQEEVLTCIGICVYERLHKIQLKLREEQ 98
           +  ++ N  + H  +L   Q +  T         +  I L+L+ + 
Sbjct: 403 DVMVVVN--KLHKYSLVEKQPKESTI-------SIPSIYLELKVKL 439



 Score = 24.8 bits (53), Expect = 9.6
 Identities = 8/31 (25%), Positives = 15/31 (48%)

Query: 88  HKIQLKLREEQCTYQVLATVAIEALCRNFEV 118
           H +  +  E Q  Y+ + +V  +A   NF+ 
Sbjct: 5   HHMDFETGEHQYQYKDILSVFEDAFVDNFDC 35


>3io1_A Aminobenzoyl-glutamate utilization protein; peptidase_M20D
          superfamily, protein structure initiative II, NYSGXRC,
          structural genomics; 2.50A {Klebsiella pneumoniae
          subsp}
          Length = 445

 Score = 25.4 bits (56), Expect = 5.5
 Identities = 7/33 (21%), Positives = 12/33 (36%), Gaps = 1/33 (3%)

Query: 45 IASLIARAEPELIGNRRERHAKTLEIAQEEVLT 77
          +   + +  P +   RR+ H    E    E  T
Sbjct: 5  LDEYLRQLAPSMTQWRRDFHLHA-ESGWLEFRT 36


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.323    0.136    0.388 

Gapped
Lambda     K      H
   0.267   0.0472    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,796,533
Number of extensions: 98344
Number of successful extensions: 130
Number of sequences better than 10.0: 1
Number of HSP's gapped: 128
Number of HSP's successfully gapped: 13
Length of query: 119
Length of database: 6,701,793
Length adjustment: 81
Effective length of query: 38
Effective length of database: 4,440,192
Effective search space: 168727296
Effective search space used: 168727296
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.0 bits)