BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy5674
         (145 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2CRR|A Chain A, Solution Structure Of Arfgap Domain From Human Smap1
          Length = 141

 Score =  177 bits (449), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 75/119 (63%), Positives = 98/119 (82%)

Query: 2   SSKAEKERQKQIQDKCQNLLMQMLKDDDNKYCVDCDAKGPRWASWNIGIFLCIRCAGIHR 61
            S     + +++ ++ Q +L ++L+++DNKYC DC+AKGPRWASWNIG+F+CIRCAGIHR
Sbjct: 1   GSSGSSGKAQKLNEQHQLILSKLLREEDNKYCADCEAKGPRWASWNIGVFICIRCAGIHR 60

Query: 62  NLGVHISRVKSVNLDTWTPEQVVSLQQMGNSRARAVYEANIPDNFRRPQTDSTLEAFIR 120
           NLGVHISRVKSVNLD WT EQ+  +Q MGN++AR +YEAN+P+NFRRPQTD  +E FIR
Sbjct: 61  NLGVHISRVKSVNLDQWTAEQIQCMQDMGNTKARLLYEANLPENFRRPQTDQAVEFFIR 119


>pdb|2IQJ|A Chain A, Crystal Structure Of The Gap Domain Of Smap1l (Loc64744)
           Stromal Membrane-Associated Protein 1-Like
 pdb|2IQJ|B Chain B, Crystal Structure Of The Gap Domain Of Smap1l (Loc64744)
           Stromal Membrane-Associated Protein 1-Like
          Length = 134

 Score =  174 bits (442), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 75/115 (65%), Positives = 94/115 (81%)

Query: 15  DKCQNLLMQMLKDDDNKYCVDCDAKGPRWASWNIGIFLCIRCAGIHRNLGVHISRVKSVN 74
           D+ Q +L  +L ++DNK+C DC +KGPRWASWNIG+F+CIRCAGIHRNLGVHISRVKSVN
Sbjct: 12  DRYQAVLANLLLEEDNKFCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVN 71

Query: 75  LDTWTPEQVVSLQQMGNSRARAVYEANIPDNFRRPQTDSTLEAFIRAKYEQKKYI 129
           LD WT EQ+  +Q+MGN +A  +YEA +P+ FRRPQ D  +E FIR KYE+KKY+
Sbjct: 72  LDQWTQEQIQCMQEMGNGKANRLYEAYLPETFRRPQIDPAVEGFIRDKYEKKKYM 126


>pdb|3FM8|C Chain C, Crystal Structure Of Full Length Centaurin Alpha-1 Bound
           With The Fha Domain Of Kif13b (Capri Target)
 pdb|3FM8|D Chain D, Crystal Structure Of Full Length Centaurin Alpha-1 Bound
           With The Fha Domain Of Kif13b (Capri Target)
 pdb|3MDB|C Chain C, Crystal Structure Of The Ternary Complex Of Full Length
           Centaurin Alpha-1, Kif13b Fha Domain, And Ip4
 pdb|3MDB|D Chain D, Crystal Structure Of The Ternary Complex Of Full Length
           Centaurin Alpha-1, Kif13b Fha Domain, And Ip4
          Length = 392

 Score =  101 bits (251), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 49/115 (42%), Positives = 74/115 (64%), Gaps = 4/115 (3%)

Query: 21  LMQMLKDDDNKYCVDCDAKGPRWASWNIGIFLCIRCAGIHRNLGVHISRVKSVNLDTWTP 80
           ++++L+   N  C DC A  P WAS+ +G+F+C+ C+GIHRN+   +S+VKSV LD W  
Sbjct: 27  VLELLQRPGNARCADCGAPDPDWASYTLGVFICLSCSGIHRNI-PQVSKVKSVRLDAWEE 85

Query: 81  EQVVSLQQMGNSRARAVYEANIPDNFRRPQ-TDSTL--EAFIRAKYEQKKYIASE 132
            QV  +   GN  ARA +E+ +P  + RP  +D  L  E +IRAKYE++++I  E
Sbjct: 86  AQVEFMASHGNDAARARFESKVPSFYYRPTPSDCQLLREQWIRAKYERQEFIYPE 140


>pdb|3FEH|A Chain A, Crystal Structure Of Full Length Centaurin Alpha-1
 pdb|3LJU|X Chain X, Crystal Structure Of Full Length Centaurin Alpha-1 Bound
           With The Head Group Of Pip3
          Length = 386

 Score =  101 bits (251), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 49/115 (42%), Positives = 74/115 (64%), Gaps = 4/115 (3%)

Query: 21  LMQMLKDDDNKYCVDCDAKGPRWASWNIGIFLCIRCAGIHRNLGVHISRVKSVNLDTWTP 80
           ++++L+   N  C DC A  P WAS+ +G+F+C+ C+GIHRN+   +S+VKSV LD W  
Sbjct: 25  VLELLQRPGNARCADCGAPDPDWASYTLGVFICLSCSGIHRNI-PQVSKVKSVRLDAWEE 83

Query: 81  EQVVSLQQMGNSRARAVYEANIPDNFRRPQ-TDSTL--EAFIRAKYEQKKYIASE 132
            QV  +   GN  ARA +E+ +P  + RP  +D  L  E +IRAKYE++++I  E
Sbjct: 84  AQVEFMASHGNDAARARFESKVPSFYYRPTPSDCQLLREQWIRAKYERQEFIYPE 138


>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
 pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
          Length = 368

 Score = 97.8 bits (242), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 47/115 (40%), Positives = 72/115 (62%), Gaps = 4/115 (3%)

Query: 19  NLLMQMLKDDDNKYCVDCDAKGPRWASWNIGIFLCIRCAGIHRNLGVHISRVKSVNLDTW 78
           +++ Q+   D N  C DC    P WAS N+G+ LCI+C+GIHR+LGVH S+V+S+ LD+W
Sbjct: 34  HVVAQVQSVDGNAQCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDSW 93

Query: 79  TPEQVVSLQQMGNSRARAVYEANIPD-NFRRPQTDSTL---EAFIRAKYEQKKYI 129
            PE V  + ++GN     +YEA +     ++P    +    EA+I AKY +KK++
Sbjct: 94  EPELVKLMCELGNVIINQIYEARVEAMAVKKPGPSCSRQEKEAWIHAKYVEKKFL 148


>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
           Repeat Domain Of Acap1
 pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
           Repeat Domain Of Acap1
          Length = 368

 Score = 97.8 bits (242), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 47/115 (40%), Positives = 72/115 (62%), Gaps = 4/115 (3%)

Query: 19  NLLMQMLKDDDNKYCVDCDAKGPRWASWNIGIFLCIRCAGIHRNLGVHISRVKSVNLDTW 78
           +++ Q+   D N  C DC    P WAS N+G+ LCI+C+GIHR+LGVH S+V+S+ LD+W
Sbjct: 34  HVVAQVQSVDGNAQCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDSW 93

Query: 79  TPEQVVSLQQMGNSRARAVYEANIPD-NFRRPQTDSTL---EAFIRAKYEQKKYI 129
            PE V  + ++GN     +YEA +     ++P    +    EA+I AKY +KK++
Sbjct: 94  EPELVKLMCELGNVIINQIYEARVEAMAVKKPGPSCSRQEKEAWIHAKYVEKKFL 148


>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
           With Integrin Beta1 Peptide
 pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
           With Integrin Beta1 Peptide
          Length = 390

 Score = 97.4 bits (241), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 47/115 (40%), Positives = 72/115 (62%), Gaps = 4/115 (3%)

Query: 19  NLLMQMLKDDDNKYCVDCDAKGPRWASWNIGIFLCIRCAGIHRNLGVHISRVKSVNLDTW 78
           +++ Q+   D N  C DC    P WAS N+G+ LCI+C+GIHR+LGVH S+V+S+ LD+W
Sbjct: 34  HVVAQVQSVDGNAQCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDSW 93

Query: 79  TPEQVVSLQQMGNSRARAVYEANIPD-NFRRPQTDSTL---EAFIRAKYEQKKYI 129
            PE V  + ++GN     +YEA +     ++P    +    EA+I AKY +KK++
Sbjct: 94  EPELVKLMCELGNVIINQIYEARVEAMAVKKPGPSCSRQEKEAWIHAKYVEKKFL 148


>pdb|2OWA|A Chain A, Crystal Structure Of Putative Gtpase Activating Protein
           For Adp Ribosylation Factor From Cryptosporidium Parvum
           (Cgd5_1040)
 pdb|2OWA|B Chain B, Crystal Structure Of Putative Gtpase Activating Protein
           For Adp Ribosylation Factor From Cryptosporidium Parvum
           (Cgd5_1040)
          Length = 138

 Score = 85.5 bits (210), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 40/122 (32%), Positives = 73/122 (59%), Gaps = 2/122 (1%)

Query: 5   AEKERQKQIQDKCQNLLMQMLKDD-DNKYCVDCDAKGPRWASWNIGIFLCIRCAGIHRNL 63
           A+ + +  + DK ++   Q++++  +N+ C DC+++ P W S +  +F+C+ C+  HR +
Sbjct: 10  ADVDEKGFVSDKLRDNFFQIVRNRPENRTCFDCESRNPTWLSLSFAVFICLNCSSDHRKM 69

Query: 64  GVHISRVKSVNLDTWTPEQVVSLQQMGNSRARAVYEANIPDNFRRPQTDSTLEAFIRAKY 123
           GVHIS V+S +LD +TP Q+V +   GN RAR  ++  +  NF  P+T     +    +Y
Sbjct: 70  GVHISFVRSSDLDKFTPIQLVRMDIGGNGRARNYFKQVLGVNF-SPKTKEYASSICGRQY 128

Query: 124 EQ 125
           +Q
Sbjct: 129 KQ 130


>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
 pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
 pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
 pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
          Length = 301

 Score = 84.0 bits (206), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 65/119 (54%), Gaps = 4/119 (3%)

Query: 14  QDKCQNLLMQMLKDDDNKYCVDCDAKGPRWASWNIGIFLCIRCAGIHRNLGVHISRVKSV 73
            D  + L+ ++     N  C DC A  P W S N+G+  CI+C+G+HR LGV  SR++S+
Sbjct: 26  HDLTKLLIAEVKSRPGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSL 85

Query: 74  NLDTWTPEQVVSLQQMGNSRARAVYEANIPDNFR-RPQTDSTLEA---FIRAKYEQKKY 128
            LD   P +++    MGN+    V EA +P +   +P  +S +     +I AKY + ++
Sbjct: 86  TLDLLGPSELLLALNMGNTSFNEVMEAQLPSHGGPKPSAESDMGTRRDYIMAKYVEHRF 144


>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
           Trans State
 pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
           Trans State Soaked With Calcium
          Length = 497

 Score = 83.2 bits (204), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 41/119 (34%), Positives = 65/119 (54%), Gaps = 4/119 (3%)

Query: 14  QDKCQNLLMQMLKDDDNKYCVDCDAKGPRWASWNIGIFLCIRCAGIHRNLGVHISRVKSV 73
            D  + L+ ++     N  C DC A  P W S N+G+  CI+C+G+HR LGV  SR++S+
Sbjct: 7   HDLTKLLIAEVKSRPGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSL 66

Query: 74  NLDTWTPEQVVSLQQMGNSRARAVYEANIPDNFR-RPQTDS---TLEAFIRAKYEQKKY 128
            LD   P +++    MGN+    V EA +P +   +P  +S   T   +I AKY + ++
Sbjct: 67  TLDLLGPSELLLALNMGNTSFNEVMEAQLPSHGGPKPSAESDMGTRRDYIMAKYVEHRF 125


>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
           Repeats Of Papbeta
          Length = 278

 Score = 81.6 bits (200), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 39/103 (37%), Positives = 60/103 (58%), Gaps = 4/103 (3%)

Query: 30  NKYCVDCDAKGPRWASWNIGIFLCIRCAGIHRNLGVHISRVKSVNLDTWTPEQVVSLQQM 89
           N  C DC A  P W S N+GI  CI C+GIHR LGVH SR++S+ LD     +++  + +
Sbjct: 17  NDVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDVLGTSELLLAKNI 76

Query: 90  GNSRARAVYEANIP-DNFRRPQTDSTLEA---FIRAKYEQKKY 128
           GN+    + E  +P ++  +P   S + A   +I AKY +++Y
Sbjct: 77  GNAGFNEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRY 119


>pdb|3SUB|A Chain A, Crystal Structure Of The Catalytic Domain Of Plasmodium
          Falciparum Arf Gtpase Activating Protein
 pdb|3SUB|B Chain B, Crystal Structure Of The Catalytic Domain Of Plasmodium
          Falciparum Arf Gtpase Activating Protein
          Length = 163

 Score = 80.5 bits (197), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 34/74 (45%), Positives = 48/74 (64%)

Query: 26 KDDDNKYCVDCDAKGPRWASWNIGIFLCIRCAGIHRNLGVHISRVKSVNLDTWTPEQVVS 85
          +D+ N  C DC    P W S N GIFLCI C+G+HR+LGVHIS V+S+ +D +T EQ+  
Sbjct: 18 EDESNNKCFDCGISNPDWVSVNHGIFLCINCSGVHRSLGVHISIVRSIKMDIFTDEQLKY 77

Query: 86 LQQMGNSRARAVYE 99
          + + GN + +   E
Sbjct: 78 IDKGGNKKCQTYLE 91


>pdb|2P57|A Chain A, Gap Domain Of Znf289, An Id1-Regulated Zinc Finger Protein
          Length = 144

 Score = 79.7 bits (195), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 37/82 (45%), Positives = 51/82 (62%), Gaps = 1/82 (1%)

Query: 18  QNLLMQMLKDDDNKYCVDCDAKGPRWASWNIGIFLCIRCAGIHRNLGVHISRVKSVNLDT 77
           Q L  ++     NK C DC AK P WAS   G+FLCI C+G+HR+LGVH+S ++S  LD+
Sbjct: 25  QTLFKRLRAVPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSFIRSTELDS 84

Query: 78  -WTPEQVVSLQQMGNSRARAVY 98
            W   Q+  +Q  GN+ A A +
Sbjct: 85  NWNWFQLRCMQVGGNANATAFF 106


>pdb|2CRW|A Chain A, Solution Structure Of The Arfgap Domain Of
          Adp-Ribosylation Factor Gtpaseactivating Protein 3
          (Arfgap 3)
          Length = 149

 Score = 76.3 bits (186), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 34/71 (47%), Positives = 47/71 (66%), Gaps = 1/71 (1%)

Query: 30 NKYCVDCDAKGPRWASWNIGIFLCIRCAGIHRNLGVHISRVKSVNLDT-WTPEQVVSLQQ 88
          NK C DC AK P WAS   G+FLCI C+G HR+LGVH+S ++S  LD+ W+  Q+  +Q 
Sbjct: 29 NKVCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIRSTELDSNWSWFQLRCMQV 88

Query: 89 MGNSRARAVYE 99
           GN+ A + + 
Sbjct: 89 GGNASASSFFH 99


>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
 pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
          Length = 329

 Score = 73.2 bits (178), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 53/91 (58%)

Query: 10  QKQIQDKCQNLLMQMLKDDDNKYCVDCDAKGPRWASWNIGIFLCIRCAGIHRNLGVHISR 69
           Q     + + +L ++   D+N  C +C A  P+W S   GI++C+ C+G HR LGVH+S 
Sbjct: 17  QGMASPRTRKVLKEVRVQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSF 76

Query: 70  VKSVNLDTWTPEQVVSLQQMGNSRARAVYEA 100
           V+SV +D W   ++  ++  GN++ R   E+
Sbjct: 77  VRSVTMDKWKDIELEKMKAGGNAKFREFLES 107


>pdb|3DWD|A Chain A, Crystal Structure Of The Arfgap Domain Of Human Arfgap1
 pdb|3DWD|B Chain B, Crystal Structure Of The Arfgap Domain Of Human Arfgap1
          Length = 147

 Score = 72.8 bits (177), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 53/92 (57%)

Query: 9   RQKQIQDKCQNLLMQMLKDDDNKYCVDCDAKGPRWASWNIGIFLCIRCAGIHRNLGVHIS 68
           R      + + +L ++   D+N  C +C A  P+W S   GI++C+ C+G HR LGVH+S
Sbjct: 17  RGSMASPRTRKVLKEVRVQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLS 76

Query: 69  RVKSVNLDTWTPEQVVSLQQMGNSRARAVYEA 100
            V+SV +D W   ++  ++  GN++ R   E+
Sbjct: 77  FVRSVTMDKWKDIELEKMKAGGNAKFREFLES 108


>pdb|2OLM|A Chain A, Arfgap Domain Of Hiv-1 Rev Binding Protein
          Length = 140

 Score = 72.8 bits (177), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 45/142 (31%), Positives = 77/142 (54%), Gaps = 21/142 (14%)

Query: 2   SSKAEKERQKQIQDKCQNLLMQMLKDDDNKYCVDCDAKGPRWASWNIGIFLCIRCAGIHR 61
           SS   K+ +K ++     +L  M     N+ C DCD +GP + +  +G F+C  C+G  R
Sbjct: 2   SSAKRKQEEKHLK-----MLRDMTGLPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLR 56

Query: 62  NLGVHISRVKSVNLDTWTPEQVVSLQQMGNSRARAVY-------EANIPDNFRRPQTDST 114
            L     RVKS+++ T+T +++  LQ+ GN   + ++        + IPD FR PQ    
Sbjct: 57  GLNP-PHRVKSISMTTFTQQEIEFLQKHGNEVCKQIWLGLFDDRSSAIPD-FRDPQ---K 111

Query: 115 LEAFIRAKYEQKKYIASEWVPP 136
           ++ F++ KYE+K++    +VPP
Sbjct: 112 VKEFLQEKYEKKRW----YVPP 129


>pdb|2D9L|A Chain A, Solution Structure Of The Arfgap Domain Of Human Rip
          Length = 134

 Score = 71.2 bits (173), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 42/126 (33%), Positives = 72/126 (57%), Gaps = 20/126 (15%)

Query: 22  MQMLKD----DDNKYCVDCDAKGPRWASWNIGIFLCIRCAGIHRNLGVHISRVKSVNLDT 77
           ++ML+D      N+ C DCD +GP + +  +G F+C  C+G  R L     RVKS+++ T
Sbjct: 8   LKMLRDMTGLPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNP-PHRVKSISMTT 66

Query: 78  WTPEQVVSLQQMGNSRARAVY-------EANIPDNFRRPQTDSTLEAFIRAKYEQKKYIA 130
           +T +++  LQ+ GN   + ++        + IPD FR PQ    ++ F++ KYE+K++  
Sbjct: 67  FTQQEIEFLQKHGNEVCKQIWLGLFDDRSSAIPD-FRDPQ---KVKEFLQEKYEKKRW-- 120

Query: 131 SEWVPP 136
             +VPP
Sbjct: 121 --YVPP 124


>pdb|3LV4|A Chain A, Crystal Structure Of The Glycoside Hydrolase, Family 43
           Yxia Protein From Bacillus Licheniformis. Northeast
           Structural Genomics Consortium Target Bir14.
 pdb|3LV4|B Chain B, Crystal Structure Of The Glycoside Hydrolase, Family 43
           Yxia Protein From Bacillus Licheniformis. Northeast
           Structural Genomics Consortium Target Bir14
          Length = 456

 Score = 29.6 bits (65), Expect = 0.56,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 3/60 (5%)

Query: 54  IRCAGIHRNLGVHISRVKSVNLDTWTPEQVVSLQQMGNSRARAVYEANIPDNFRRPQTDS 113
           I+  G +   G H++  KS +L  WT  Q+ S    GN     VYE  + + F   ++D+
Sbjct: 19  IKANGTYYVFGSHLASAKSTDLXNWT--QISSSVHDGNPLIPNVYE-ELKETFEWAESDT 75


>pdb|3Q5I|A Chain A, Crystal Structure Of Pbanka_031420
          Length = 504

 Score = 27.3 bits (59), Expect = 3.4,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 17/33 (51%)

Query: 11  KQIQDKCQNLLMQMLKDDDNKYCVDCDAKGPRW 43
           K I D+ + L+  ML  D NK C   +A   RW
Sbjct: 272 KNISDEAKELIKLMLTYDYNKRCTAEEALNSRW 304


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.133    0.415 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,223,254
Number of Sequences: 62578
Number of extensions: 152154
Number of successful extensions: 397
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 369
Number of HSP's gapped (non-prelim): 21
length of query: 145
length of database: 14,973,337
effective HSP length: 89
effective length of query: 56
effective length of database: 9,403,895
effective search space: 526618120
effective search space used: 526618120
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)