Query psy5674
Match_columns 145
No_of_seqs 115 out of 1075
Neff 6.5
Searched_HMMs 29240
Date Fri Aug 16 23:44:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5674.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5674hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2iqj_A Stromal membrane-associ 100.0 9.1E-49 3.1E-53 289.1 7.5 119 14-132 11-129 (134)
2 2crr_A Stromal membrane-associ 100.0 2.4E-49 8.2E-54 294.4 3.0 129 8-136 7-135 (141)
3 2olm_A Nucleoporin-like protei 100.0 1.8E-44 6.2E-49 267.9 11.1 122 11-133 6-130 (140)
4 3lju_X ARF-GAP with dual PH do 100.0 3.1E-40 1.1E-44 278.5 10.2 123 10-133 14-139 (386)
5 3jue_A Arfgap with coiled-coil 100.0 4.4E-40 1.5E-44 275.1 7.9 120 13-132 28-151 (368)
6 2owa_A Arfgap-like finger doma 100.0 1.2E-38 4E-43 236.0 8.3 110 16-127 22-132 (138)
7 2crw_A ARF GAP 3, ADP-ribosyla 100.0 7.6E-38 2.6E-42 234.1 6.0 89 16-104 15-104 (149)
8 3dwd_A ADP-ribosylation factor 100.0 2.5E-36 8.7E-41 224.8 10.1 89 14-102 22-110 (147)
9 2p57_A GTPase-activating prote 100.0 1E-35 3.5E-40 221.2 7.1 87 16-102 23-110 (144)
10 2b0o_E UPLC1; arfgap, structur 100.0 7.8E-35 2.7E-39 235.6 9.3 120 12-131 24-147 (301)
11 3sub_A ADP-ribosylation factor 100.0 3E-35 1E-39 222.0 5.9 90 16-105 7-97 (163)
12 3lvq_E ARF-GAP with SH3 domain 100.0 3.9E-35 1.3E-39 250.6 6.6 123 11-133 4-130 (497)
13 1dcq_A PYK2-associated protein 100.0 2.2E-34 7.4E-39 230.4 8.2 120 15-134 2-125 (278)
14 3o47_A ADP-ribosylation factor 100.0 2.9E-31 9.8E-36 218.1 9.4 94 10-103 17-110 (329)
15 1gnf_A Transcription factor GA 90.4 0.14 4.6E-06 30.5 1.9 38 28-65 2-40 (46)
16 1u5k_A Hypothetical protein; O 89.9 0.44 1.5E-05 36.7 5.0 51 28-94 148-198 (244)
17 2kgo_A Uncharacterized protein 86.6 0.087 3E-06 36.8 -0.9 33 29-61 55-88 (108)
18 3dfx_A Trans-acting T-cell-spe 86.3 0.25 8.7E-06 31.2 1.3 39 27-65 4-43 (63)
19 2vut_I AREA, nitrogen regulato 86.2 0.28 9.4E-06 28.7 1.3 34 31-64 2-36 (43)
20 1tjl_A DNAK suppressor protein 86.1 0.31 1.1E-05 35.7 1.8 42 19-61 101-143 (151)
21 4gat_A Nitrogen regulatory pro 83.9 0.53 1.8E-05 29.9 1.9 37 28-64 7-44 (66)
22 4hc9_A Trans-acting T-cell-spe 81.6 0.5 1.7E-05 33.1 1.2 35 30-64 5-40 (115)
23 1d4u_A Nucleotide excision rep 79.9 0.51 1.8E-05 33.0 0.8 33 28-60 3-36 (111)
24 1zbd_B Rabphilin-3A; G protein 78.5 4.4 0.00015 28.9 5.5 54 6-60 32-90 (134)
25 3g9m_A Glucocorticoid receptor 77.3 0.77 2.6E-05 30.6 1.1 30 29-61 1-30 (90)
26 2kae_A GATA-type transcription 75.0 0.65 2.2E-05 29.9 0.2 37 28-65 6-45 (71)
27 1hcq_A Protein (estrogen recep 71.4 1.5 5.3E-05 28.8 1.4 31 29-62 3-33 (84)
28 2zet_C Melanophilin; complex, 70.2 11 0.00037 27.4 5.9 35 28-62 66-105 (153)
29 2nll_B Protein (thyroid hormon 67.8 1.4 4.9E-05 30.1 0.6 29 31-62 2-30 (103)
30 1r4i_A Androgen receptor; AR, 67.7 1.3 4.4E-05 30.5 0.3 32 28-62 5-36 (105)
31 2han_B Ecdysone receptor; tran 66.9 2.1 7E-05 30.0 1.3 32 28-62 6-37 (119)
32 2ebl_A COUP transcription fact 66.4 1.7 6E-05 28.9 0.8 32 28-62 5-36 (89)
33 1dl6_A Transcription factor II 66.2 3.2 0.00011 25.3 1.9 30 31-61 12-41 (58)
34 2han_A Protein ultraspiracle; 65.8 2 7E-05 28.8 1.1 31 29-62 9-39 (93)
35 2kq9_A DNAK suppressor protein 65.4 1.4 4.7E-05 30.4 0.1 42 16-58 68-110 (112)
36 1cit_A NGFI-B, protein (orphan 62.5 2.9 9.8E-05 27.8 1.3 28 32-62 2-29 (89)
37 1ynw_B Retinoic acid receptor 62.4 2.1 7.1E-05 29.1 0.6 30 30-62 3-32 (99)
38 4hc9_A Trans-acting T-cell-spe 62.2 3.7 0.00013 28.6 1.9 38 28-65 57-95 (115)
39 1dsz_A RAR-alpha, retinoic aci 62.1 2.2 7.5E-05 28.2 0.6 29 31-62 5-33 (86)
40 1a6y_A Orphan nuclear receptor 61.6 2.5 8.5E-05 28.4 0.9 31 29-62 6-36 (94)
41 2a66_A Orphan nuclear receptor 61.5 1.7 6E-05 30.2 0.1 33 27-62 6-38 (113)
42 1ffk_W Ribosomal protein L37AE 61.4 8.7 0.0003 24.7 3.4 40 18-59 14-54 (73)
43 1kb2_A Vitamin D3 receptor; VD 59.7 2.3 8E-05 29.4 0.5 31 29-62 5-35 (110)
44 1dsz_B RXR-alpha, retinoic aci 57.5 1.8 6.3E-05 28.5 -0.4 32 28-62 3-34 (85)
45 1lo1_A Steroid hormone recepto 55.8 2.1 7.1E-05 29.0 -0.3 30 30-62 4-33 (98)
46 4glq_A Methyl-accepting chemot 55.5 11 0.00038 26.8 3.6 29 77-105 132-160 (171)
47 4bbr_M Transcription initiatio 54.2 7.5 0.00026 31.6 2.7 28 32-59 23-51 (345)
48 1pft_A TFIIB, PFTFIIBN; N-term 53.7 9.7 0.00033 21.9 2.5 30 30-60 5-34 (50)
49 4hn5_A Glucocorticoid receptor 53.6 4.1 0.00014 28.5 0.9 32 27-61 26-57 (117)
50 3cbb_A HNF-4-alpha, hepatocyte 52.5 3.4 0.00011 26.7 0.3 28 32-62 2-29 (78)
51 3dzy_D Peroxisome proliferator 51.3 4.8 0.00016 33.5 1.1 32 28-62 48-79 (419)
52 3k7a_M Transcription initiatio 49.2 7.4 0.00025 31.5 1.9 31 31-61 22-53 (345)
53 3k1f_M Transcription initiatio 46.7 15 0.00051 27.8 3.1 29 32-60 23-52 (197)
54 3po3_S Transcription elongatio 46.7 8.4 0.00029 28.6 1.7 31 30-60 137-175 (178)
55 3a1b_A DNA (cytosine-5)-methyl 45.6 16 0.00054 26.9 3.0 51 5-58 12-64 (159)
56 1vq8_Z 50S ribosomal protein L 44.7 6.4 0.00022 25.8 0.7 39 20-60 16-55 (83)
57 1qyp_A RNA polymerase II; tran 44.3 7.9 0.00027 23.1 1.0 32 30-61 15-54 (57)
58 1k81_A EIF-2-beta, probable tr 44.0 9.7 0.00033 20.9 1.3 28 32-59 2-30 (36)
59 3c5k_A HD6, histone deacetylas 43.7 16 0.00056 24.9 2.7 25 30-54 24-48 (109)
60 1pqv_S STP-alpha, transcriptio 42.8 35 0.0012 27.2 5.0 30 30-59 268-305 (309)
61 3j21_d 50S ribosomal protein L 41.5 11 0.00038 25.1 1.5 28 30-58 33-77 (89)
62 3dzy_A Retinoic acid receptor 37.4 5.2 0.00018 33.9 -0.8 30 29-61 136-165 (467)
63 2d74_B Translation initiation 37.0 54 0.0019 23.6 4.7 43 10-58 90-133 (148)
64 2uzg_A Ubiquitin carboxyl-term 36.6 21 0.00072 23.7 2.3 28 28-55 23-53 (97)
65 2g45_A Ubiquitin carboxyl-term 35.2 24 0.00081 24.8 2.5 29 28-56 32-60 (129)
66 3j21_g 50S ribosomal protein L 34.1 9.4 0.00032 22.9 0.2 25 29-59 13-37 (51)
67 2ida_A Hypothetical protein; z 33.9 9.3 0.00032 26.0 0.2 29 28-60 16-44 (102)
68 1ovx_A ATP-dependent CLP prote 33.7 19 0.00066 22.7 1.6 29 31-59 19-49 (67)
69 3cc2_Z 50S ribosomal protein L 33.6 12 0.00041 26.2 0.7 39 20-60 49-88 (116)
70 3qqc_A DNA-directed RNA polyme 33.5 27 0.00091 29.5 2.9 55 32-88 7-87 (436)
71 3cit_A Sensor histidine kinase 32.4 50 0.0017 24.1 3.9 65 34-99 79-147 (160)
72 2ds5_A CLPX, ATP-dependent CLP 31.5 31 0.0011 20.4 2.2 31 29-59 10-42 (51)
73 3j20_Y 30S ribosomal protein S 29.4 30 0.001 20.3 1.9 30 29-60 18-47 (50)
74 2e9h_A EIF-5, eukaryotic trans 29.3 64 0.0022 23.5 4.1 43 10-58 89-134 (157)
75 3iz5_i 60S ribosomal protein L 28.2 24 0.00083 24.7 1.5 14 45-58 75-88 (119)
76 3u5e_g 60S ribosomal protein L 27.8 24 0.00082 24.8 1.5 29 30-58 41-86 (121)
77 2g2k_A EIF-5, eukaryotic trans 26.8 81 0.0028 23.2 4.3 43 10-58 82-127 (170)
78 3mpx_A FYVE, rhogef and PH dom 26.1 18 0.0006 29.5 0.6 33 30-62 375-411 (434)
79 2yqk_A Arginine-glutamic acid 24.6 46 0.0016 20.1 2.2 18 71-88 5-22 (63)
80 3d00_A Tungsten formylmethanof 23.8 11 0.00037 28.3 -1.1 24 30-58 163-186 (191)
81 2crg_A Metastasis associated p 23.6 47 0.0016 20.6 2.2 15 74-88 7-21 (70)
82 2k4x_A 30S ribosomal protein S 21.9 59 0.002 19.3 2.2 30 29-60 17-46 (55)
83 4a18_L RPL34; ribosome, eukary 20.6 41 0.0014 23.6 1.5 15 44-58 74-88 (123)
84 3j21_i 50S ribosomal protein L 20.5 47 0.0016 21.7 1.7 30 28-59 33-62 (83)
85 1nui_A DNA primase/helicase; z 20.5 39 0.0013 25.6 1.5 28 29-57 13-40 (255)
No 1
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=100.00 E-value=9.1e-49 Score=289.10 Aligned_cols=119 Identities=63% Similarity=1.210 Sum_probs=113.1
Q ss_pred HHHHHHHHHHHhcCCCCCCccCCCCCCCCeeecccceeeecccccccccCCCccceeeecccCCCCHHHHHHHHhhccHH
Q psy5674 14 QDKCQNLLMQMLKDDDNKYCVDCDAKGPRWASWNIGIFLCIRCAGIHRNLGVHISRVKSVNLDTWTPEQVVSLQQMGNSR 93 (145)
Q Consensus 14 ~e~~~~~l~~l~~~p~N~~CaDCg~~~p~w~s~~~GvflC~~Cs~iHR~lg~~is~Vksl~ld~w~~~~i~~l~~~GN~~ 93 (145)
+|+++.+|++|+..|+|+.|+|||+++|+|+|+|||||||+.|+|+||.||+|||+||||+||+|++++|+.|+.+||.+
T Consensus 11 ~e~~~~~l~~L~~~p~N~~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR~lG~hiS~VkSl~ld~w~~~~l~~m~~~GN~~ 90 (134)
T 2iqj_A 11 VDRYQAVLANLLLEEDNKFCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTQEQIQCMQEMGNGK 90 (134)
T ss_dssp --CCHHHHHHHTTSGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHcCcCCCcCCcCcCCCCCeEEecCCEEEhHhhhHHHhcCCCCCCceeeccccCCCHHHHHHHHHHchHH
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCCCCCCCCchHHHHHHHHHHhhcccccCC
Q psy5674 94 ARAVYEANIPDNFRRPQTDSTLEAFIRAKYEQKKYIASE 132 (145)
Q Consensus 94 ~n~~~e~~~p~~~~~p~~~~~~~~fI~~KY~~k~f~~~~ 132 (145)
+|++||+++|+.+.+|++++.+++||++||++++|+.+.
T Consensus 91 an~~~e~~lp~~~~~P~~~~~~e~fIr~KY~~k~f~~~~ 129 (134)
T 2iqj_A 91 ANRLYEAYLPETFRRPQIDPAVEGFIRDKYEKKKYMDRS 129 (134)
T ss_dssp HHHHHTTTCCSSCCCCCSHHHHHHHHHHHHTSCTTCCTT
T ss_pred HHHHHHhcCCccCCCCCchHHHHHHHHHHHhCCeeeCCc
Confidence 999999999999888988888999999999999999764
No 2
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=100.00 E-value=2.4e-49 Score=294.41 Aligned_cols=129 Identities=62% Similarity=1.175 Sum_probs=121.7
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCccCCCCCCCCeeecccceeeecccccccccCCCccceeeecccCCCCHHHHHHHH
Q psy5674 8 ERQKQIQDKCQNLLMQMLKDDDNKYCVDCDAKGPRWASWNIGIFLCIRCAGIHRNLGVHISRVKSVNLDTWTPEQVVSLQ 87 (145)
Q Consensus 8 ~~~k~~~e~~~~~l~~l~~~p~N~~CaDCg~~~p~w~s~~~GvflC~~Cs~iHR~lg~~is~Vksl~ld~w~~~~i~~l~ 87 (145)
+.++.++|.++.+|++|+..|+|+.|+|||+++|+|||++||||||+.|+|+||.||+|||+||||+||+|++++|++|+
T Consensus 7 ~~~~~~~e~~~~~l~~L~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VkSl~ld~w~~~~l~~m~ 86 (141)
T 2crr_A 7 GKAQKLNEQHQLILSKLLREEDNKYCADCEAKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTAEQIQCMQ 86 (141)
T ss_dssp CCTTTTTTCHHHHHHHHHHSGGGSSCSSSCCSSCCSEETTTTEECCHHHHHHHHHHCTTTCCCBCSSSSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCccCCcCCCCCCCCCCeEEeccCeEEhhhhhHhHhcCCCCCCeeeECCCCCCCHHHHHHHH
Confidence 44556778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccHHHHHHHHhhCCCCCCCCCCchHHHHHHHHHHhhcccccCCCCCC
Q psy5674 88 QMGNSRARAVYEANIPDNFRRPQTDSTLEAFIRAKYEQKKYIASEWVPP 136 (145)
Q Consensus 88 ~~GN~~~n~~~e~~~p~~~~~p~~~~~~~~fI~~KY~~k~f~~~~~~~~ 136 (145)
.+||.++|++||+++|+.+.+|++++.+++||++||++++|+.+..+.-
T Consensus 87 ~~GN~~an~~~e~~lp~~~~~P~~~~~~e~fIr~KY~~k~f~~~~~~~~ 135 (141)
T 2crr_A 87 DMGNTKARLLYEANLPENFRRPQTDQAVEFFIRDKYEKKKYYDKNAIAI 135 (141)
T ss_dssp HTHHHHHHHHGGGSCCTTCCCCCSHHHHHHHHHHHHTSCTTCCCGGGCC
T ss_pred HHccHHHHHHHHhcCCcccCCCCchHHHHHHHHHHHhcCcccCCCcccc
Confidence 9999999999999999998889988889999999999999998876653
No 3
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=100.00 E-value=1.8e-44 Score=267.86 Aligned_cols=122 Identities=28% Similarity=0.577 Sum_probs=110.1
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCccCCCCCCCCeeecccceeeecccccccccCCCccceeeecccCCCCHHHHHHHHhhc
Q psy5674 11 KQIQDKCQNLLMQMLKDDDNKYCVDCDAKGPRWASWNIGIFLCIRCAGIHRNLGVHISRVKSVNLDTWTPEQVVSLQQMG 90 (145)
Q Consensus 11 k~~~e~~~~~l~~l~~~p~N~~CaDCg~~~p~w~s~~~GvflC~~Cs~iHR~lg~~is~Vksl~ld~w~~~~i~~l~~~G 90 (145)
++.+|+++.+|++|+..|+|+.|+|||+++|+|+|+|||||||+.|+|+||.||+| |+||||+||+|++++|++|+.+|
T Consensus 6 ~~~~e~~~~~l~~l~~~p~N~~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR~LG~~-s~VrSl~ld~w~~~~l~~m~~~G 84 (140)
T 2olm_A 6 RKQEEKHLKMLRDMTGLPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNPP-HRVKSISMTTFTQQEIEFLQKHG 84 (140)
T ss_dssp HHHHHHHHHHHHHHHTSGGGGSCTTTCSSCCCEEETTTTEEECHHHHHHHTTSSSC-CCEEETTTCCCCHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHhcCcCCCcCCCCCCCCCCceeeccCEEEchhccchhccCCCc-ceeeecCCCCCCHHHHHHHHHhc
Confidence 44567888999999999999999999999999999999999999999999999996 99999999999999999999999
Q ss_pred cHHHHHHHHhhCCCC-CCCCCCc--hHHHHHHHHHHhhcccccCCC
Q psy5674 91 NSRARAVYEANIPDN-FRRPQTD--STLEAFIRAKYEQKKYIASEW 133 (145)
Q Consensus 91 N~~~n~~~e~~~p~~-~~~p~~~--~~~~~fI~~KY~~k~f~~~~~ 133 (145)
|..+|++||+++++. ..+|++. ..+++||++||++++|+....
T Consensus 85 N~~an~~~e~~~~~~~~~~P~~~d~~~~~~fIr~KYe~k~f~~~~~ 130 (140)
T 2olm_A 85 NEVCKQIWLGLFDDRSSAIPDFRDPQKVKEFLQEKYEKKRWYVPPE 130 (140)
T ss_dssp HHHHHHHHTTTCCTTTSCCCCTTCHHHHHHHHHHHHTSCTTCCCHH
T ss_pred cHHHHHHHHhhCCcccCCCCCCCCHHHHHHHHHHHHcCCeeeCCcc
Confidence 999999999999763 4456532 357899999999999987643
No 4
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*
Probab=100.00 E-value=3.1e-40 Score=278.49 Aligned_cols=123 Identities=38% Similarity=0.768 Sum_probs=114.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCccCCCCCCCCeeecccceeeecccccccccCCCccceeeecccCCCCHHHHHHHHhh
Q psy5674 10 QKQIQDKCQNLLMQMLKDDDNKYCVDCDAKGPRWASWNIGIFLCIRCAGIHRNLGVHISRVKSVNLDTWTPEQVVSLQQM 89 (145)
Q Consensus 10 ~k~~~e~~~~~l~~l~~~p~N~~CaDCg~~~p~w~s~~~GvflC~~Cs~iHR~lg~~is~Vksl~ld~w~~~~i~~l~~~ 89 (145)
.+++++.++.+|++|+..|+|+.|||||+++|+|||+|||||||+.|+|+||+| +|||+||||+||+|++++|++|+.+
T Consensus 14 ~~~q~~~~~~~l~~l~~~~~N~~C~dC~~~~p~w~s~~~g~~~C~~Csg~hr~l-~his~v~s~~ld~w~~~~~~~~~~~ 92 (386)
T 3lju_X 14 LYFQGKERRRAVLELLQRPGNARCADCGAPDPDWASYTLGVFICLSCSGIHRNI-PQVSKVKSVRLDAWEEAQVEFMASH 92 (386)
T ss_dssp HHHHHHHHHHHHHHHTTSGGGSBCTTTCCBSCCEEETTTTEEECHHHHHHHHTC-TTTCCEEETTTSCCCHHHHHHHHHS
T ss_pred hhhhhhHHHHHHHHHhcCcCCCcCccCCCCCCCeEEecccEEEhhhhchHhhCC-CccceeeeecccCCCHHHHHHHHHh
Confidence 455678899999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred ccHHHHHHHHhhCCCCCCCCCCch---HHHHHHHHHHhhcccccCCC
Q psy5674 90 GNSRARAVYEANIPDNFRRPQTDS---TLEAFIRAKYEQKKYIASEW 133 (145)
Q Consensus 90 GN~~~n~~~e~~~p~~~~~p~~~~---~~~~fI~~KY~~k~f~~~~~ 133 (145)
||..+|++||+++|+...+|++++ .+++||++||++++|+..+.
T Consensus 93 gN~~~~~~~e~~~~~~~~~p~~~~~~~~~e~fIr~KY~~~~f~~~~~ 139 (386)
T 3lju_X 93 GNDAARARFESKVPSFYYRPTPSDCQLLREQWIRAKYERQEFIYPEK 139 (386)
T ss_dssp SHHHHHHHHTTTCCTTSCCCCTTSCHHHHHHHHHHHHTSCTTTSGGG
T ss_pred cchHHHHHHhccCCccCCCCCCccchHHHHHEHHhhhCCCEEECCcc
Confidence 999999999999998877776543 36899999999999998664
No 5
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=100.00 E-value=4.4e-40 Score=275.09 Aligned_cols=120 Identities=39% Similarity=0.768 Sum_probs=107.9
Q ss_pred HHHHHHHHHHHHhcCCCCCCccCCCCCCCCeeecccceeeecccccccccCCCccceeeecccCCCCHHHHHHHHhhccH
Q psy5674 13 IQDKCQNLLMQMLKDDDNKYCVDCDAKGPRWASWNIGIFLCIRCAGIHRNLGVHISRVKSVNLDTWTPEQVVSLQQMGNS 92 (145)
Q Consensus 13 ~~e~~~~~l~~l~~~p~N~~CaDCg~~~p~w~s~~~GvflC~~Cs~iHR~lg~~is~Vksl~ld~w~~~~i~~l~~~GN~ 92 (145)
.+|+++++|+.|+..|+|+.|+|||+++|+|+|++||||||+.|+|+||.||+|||+||||+||+|++++|++|+.+||.
T Consensus 28 ~~~~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~g~~~c~~c~~~hr~lg~~~s~v~s~~~d~w~~~~~~~~~~~gn~ 107 (368)
T 3jue_A 28 EPGGVGHVVAQVQSVDGNAQCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDSWEPELVKLMCELGNV 107 (368)
T ss_dssp ----CCCHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHHHHSCHH
T ss_pred hhhHHHHHHHHHHcCCCcCcCCCCCCCCCCeEEecCCeEEcHhHHHHHhccCCCcCeeEEeecccccHHHHHHHHHHccH
Confidence 45557889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCC-CCCCCCc---hHHHHHHHHHHhhcccccCC
Q psy5674 93 RARAVYEANIPDN-FRRPQTD---STLEAFIRAKYEQKKYIASE 132 (145)
Q Consensus 93 ~~n~~~e~~~p~~-~~~p~~~---~~~~~fI~~KY~~k~f~~~~ 132 (145)
.+|++||+++|+. ..+|.++ ..+++||++||++++|+.+.
T Consensus 108 ~~n~~~e~~~~~~~~~kp~~~~~~~~re~fIr~KY~~k~f~~~l 151 (368)
T 3jue_A 108 IINQIYEARVEAMAVKKPGPSCSRQEKEAWIHAKYVEKKFLTKL 151 (368)
T ss_dssp HHHHHHTTTTTTTTCCCCCTTSCHHHHHHHHHHHHTSCTTCCSC
T ss_pred HHHHHHHhhcccccCcCCCCCCCHHHHHHHHHHHHHhhcccccc
Confidence 9999999999873 4556543 35789999999999999874
No 6
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=1.2e-38 Score=235.97 Aligned_cols=110 Identities=32% Similarity=0.622 Sum_probs=97.1
Q ss_pred HHHHHHHHHhcCCCCCCccCCCCCCCCeeecccceeeecccccccccCCCccceeeecccCCCCHHHHHHHHhhccHHHH
Q psy5674 16 KCQNLLMQMLKDDDNKYCVDCDAKGPRWASWNIGIFLCIRCAGIHRNLGVHISRVKSVNLDTWTPEQVVSLQQMGNSRAR 95 (145)
Q Consensus 16 ~~~~~l~~l~~~p~N~~CaDCg~~~p~w~s~~~GvflC~~Cs~iHR~lg~~is~Vksl~ld~w~~~~i~~l~~~GN~~~n 95 (145)
..+.+++.|+..|+|+.|+|||+++|+|+|++||||||+.|+|+||.||+|||+||||+||+|++++|++|+.+||.++|
T Consensus 22 ~~~~l~~~l~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VrSl~lD~w~~~~l~~m~~~GN~~an 101 (138)
T 2owa_A 22 LRDNFFQIVRNRPENRTCFDCESRNPTWLSLSFAVFICLNCSSDHRKMGVHISFVRSSDLDKFTPIQLVRMDIGGNGRAR 101 (138)
T ss_dssp HHHHHHHHHHHSGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHTTCTTTCCEEETTTSCCCHHHHHHHHHCCHHHHH
T ss_pred HHHHHHHHHHcCcCCCcCCCCcCCCCCeEEecCCEEEhHhhhHHHhCCCCCCCeeeecCcCcCCHHHHHHHHhhccHHHH
Confidence 34567778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCCCCCCC-CchHHHHHHHHHHhhcc
Q psy5674 96 AVYEANIPDNFRRPQ-TDSTLEAFIRAKYEQKK 127 (145)
Q Consensus 96 ~~~e~~~p~~~~~p~-~~~~~~~fI~~KY~~k~ 127 (145)
++||++.... ++. ..+..+.|+..+|+++.
T Consensus 102 ~~~e~~~~~~--~~~~~~~kY~s~~a~~Y~~kL 132 (138)
T 2owa_A 102 NYFKQVLGVN--FSPKTKEYASSICGRQYKQIL 132 (138)
T ss_dssp HHHHHHTCTT--CCGGGCHHHHSHHHHHHHHHH
T ss_pred HHHHHHcCCC--CCCCHHHHHhhHHHHHHHHHH
Confidence 9999865332 111 23456889999999874
No 7
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=100.00 E-value=7.6e-38 Score=234.08 Aligned_cols=89 Identities=38% Similarity=0.727 Sum_probs=85.1
Q ss_pred HHHHHHHHHhcCCCCCCccCCCCCCCCeeecccceeeecccccccccCCCccceeeecccCC-CCHHHHHHHHhhccHHH
Q psy5674 16 KCQNLLMQMLKDDDNKYCVDCDAKGPRWASWNIGIFLCIRCAGIHRNLGVHISRVKSVNLDT-WTPEQVVSLQQMGNSRA 94 (145)
Q Consensus 16 ~~~~~l~~l~~~p~N~~CaDCg~~~p~w~s~~~GvflC~~Cs~iHR~lg~~is~Vksl~ld~-w~~~~i~~l~~~GN~~~ 94 (145)
.++.+|+.|+..|+|+.|+|||+++|+|+|+|||||||+.|+|+||.||+|||+||||+||+ |++++|+.|+.+||.++
T Consensus 15 ~~~~~l~~L~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VrSl~LD~~W~~~~l~~m~~~GN~~a 94 (149)
T 2crw_A 15 DILTIFKRLRSVPTNKVCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIRSTELDSNWSWFQLRCMQVGGNASA 94 (149)
T ss_dssp HHHHHHHHHHHSTTTSBCSSSCCBSCCCEETTTTEECCHHHHHHHHHHCTTTCCEECSSSCCCCCHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHhcCcCCCcCCCCcCCCCCcEEeccCEEEchhcchhhccCCCCCCeeeccccCCCCCHHHHHHHHHHhhHHH
Confidence 35678999999999999999999999999999999999999999999999999999999996 99999999999999999
Q ss_pred HHHHHhhCCC
Q psy5674 95 RAVYEANIPD 104 (145)
Q Consensus 95 n~~~e~~~p~ 104 (145)
|+|||++.+.
T Consensus 95 n~~~e~~~~~ 104 (149)
T 2crw_A 95 SSFFHQHGCS 104 (149)
T ss_dssp HHHHHHHCCC
T ss_pred HHHHHhcCCC
Confidence 9999999865
No 8
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}
Probab=100.00 E-value=2.5e-36 Score=224.77 Aligned_cols=89 Identities=34% Similarity=0.755 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHhcCCCCCCccCCCCCCCCeeecccceeeecccccccccCCCccceeeecccCCCCHHHHHHHHhhccHH
Q psy5674 14 QDKCQNLLMQMLKDDDNKYCVDCDAKGPRWASWNIGIFLCIRCAGIHRNLGVHISRVKSVNLDTWTPEQVVSLQQMGNSR 93 (145)
Q Consensus 14 ~e~~~~~l~~l~~~p~N~~CaDCg~~~p~w~s~~~GvflC~~Cs~iHR~lg~~is~Vksl~ld~w~~~~i~~l~~~GN~~ 93 (145)
.+.++++|++|+..|+|+.|+|||+++|+|+|++||||||++|+|+||.||+|||+||||+||+|++++|+.|+.+||.+
T Consensus 22 ~~~~~~~l~~L~~~p~N~~CaDCga~~P~WaS~nlGvfiC~~CSgiHR~LG~hISkVkSl~LD~W~~~el~~m~~~GN~~ 101 (147)
T 3dwd_A 22 SPRTRKVLKEVRVQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKMKAGGNAK 101 (147)
T ss_dssp CHHHHHHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEESCC--CCHHHHHHHHHCCHHH
T ss_pred CHHHHHHHHHHHcCcCCCccCCCCCCCCCeEEecccEeEhHhhChHHhcCCCCCCccccccccCCCHHHHHHHHHHhhHH
Confidence 45677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhC
Q psy5674 94 ARAVYEANI 102 (145)
Q Consensus 94 ~n~~~e~~~ 102 (145)
+|+|||+..
T Consensus 102 an~~~ea~~ 110 (147)
T 3dwd_A 102 FREFLESQE 110 (147)
T ss_dssp HHHHHHTST
T ss_pred HHHHHHhCC
Confidence 999999864
No 9
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=100.00 E-value=1e-35 Score=221.20 Aligned_cols=87 Identities=43% Similarity=0.793 Sum_probs=83.3
Q ss_pred HHHHHHHHHhcCCCCCCccCCCCCCCCeeecccceeeecccccccccCCCccceeeecccCC-CCHHHHHHHHhhccHHH
Q psy5674 16 KCQNLLMQMLKDDDNKYCVDCDAKGPRWASWNIGIFLCIRCAGIHRNLGVHISRVKSVNLDT-WTPEQVVSLQQMGNSRA 94 (145)
Q Consensus 16 ~~~~~l~~l~~~p~N~~CaDCg~~~p~w~s~~~GvflC~~Cs~iHR~lg~~is~Vksl~ld~-w~~~~i~~l~~~GN~~~ 94 (145)
..+.+|+.|+..|+|+.|+|||+++|+|+|++||||||+.|+|+||.||+|||+|||++||+ |++++|+.|+.+||.++
T Consensus 23 ~~~~~l~~L~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hIS~VrSl~LD~~W~~~~l~~m~~~GN~~a 102 (144)
T 2p57_A 23 EIQTLFKRLRAVPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSFIRSTELDSNWNWFQLRCMQVGGNANA 102 (144)
T ss_dssp HHHHHHHHHHHSGGGGBCTTTCCBSCCEEEGGGTEEECHHHHHHHHHHCTTTCCEEESSSCCCCCHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHHhcCCCCCcCCCCcCCCCCeEEeccCEEEhhhchHHHcCCCCCCCeeeecccCCCCCHHHHHHHHHhCHHHH
Confidence 35678889999999999999999999999999999999999999999999999999999996 99999999999999999
Q ss_pred HHHHHhhC
Q psy5674 95 RAVYEANI 102 (145)
Q Consensus 95 n~~~e~~~ 102 (145)
|++|++..
T Consensus 103 n~~~e~~g 110 (144)
T 2p57_A 103 TAFFRQHG 110 (144)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHcC
Confidence 99999875
No 10
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=100.00 E-value=7.8e-35 Score=235.57 Aligned_cols=120 Identities=33% Similarity=0.675 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHHHhcCCCCCCccCCCCCCCCeeecccceeeecccccccccCCCccceeeecccCCCCHHHHHHHHhhcc
Q psy5674 12 QIQDKCQNLLMQMLKDDDNKYCVDCDAKGPRWASWNIGIFLCIRCAGIHRNLGVHISRVKSVNLDTWTPEQVVSLQQMGN 91 (145)
Q Consensus 12 ~~~e~~~~~l~~l~~~p~N~~CaDCg~~~p~w~s~~~GvflC~~Cs~iHR~lg~~is~Vksl~ld~w~~~~i~~l~~~GN 91 (145)
..++..+.+|+.|+..|+|+.|+|||+++|+|+|+++|+|+|++|+|+||.||+|+|+|||++||.|+++++.+|..+||
T Consensus 24 ~~~~~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~g~~~c~~cs~~hr~lg~~is~v~sl~lD~w~~~~l~~~~~~GN 103 (301)
T 2b0o_E 24 EPHDLTKLLIAEVKSRPGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSELLLALNMGN 103 (301)
T ss_dssp ---CHHHHHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHHHHCCH
T ss_pred CHHHHHHHHHHHHhcCCCCCcCCCCCCCCCCeEEeecCeEEcHHHHHHHHhhCCCcccccccCcCCCCHHHHHHHHHcCC
Confidence 35667788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCC-CCCCCCc---hHHHHHHHHHHhhcccccC
Q psy5674 92 SRARAVYEANIPDN-FRRPQTD---STLEAFIRAKYEQKKYIAS 131 (145)
Q Consensus 92 ~~~n~~~e~~~p~~-~~~p~~~---~~~~~fI~~KY~~k~f~~~ 131 (145)
..+|++||+.+|.. ..+|.+. ..+++||+.||++++|..+
T Consensus 104 ~~~n~i~E~~l~~~~~~kP~~~s~~~~r~~~I~~Ky~~~~f~~~ 147 (301)
T 2b0o_E 104 TSFNEVMEAQLPSHGGPKPSAESDMGTRRDYIMAKYVEHRFARR 147 (301)
T ss_dssp HHHHHHHTTTCCSSSCSCCCTTCCHHHHHHHHHHHHTSCTTSCC
T ss_pred HHHHHHHHHhhhhccCCCCCCcccHHHHHHHHHHHHHhhhhhcc
Confidence 99999999999875 5566543 3478999999999999775
No 11
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7}
Probab=100.00 E-value=3e-35 Score=221.99 Aligned_cols=90 Identities=38% Similarity=0.757 Sum_probs=84.6
Q ss_pred HHHHHHHHHhcC-CCCCCccCCCCCCCCeeecccceeeecccccccccCCCccceeeecccCCCCHHHHHHHHhhccHHH
Q psy5674 16 KCQNLLMQMLKD-DDNKYCVDCDAKGPRWASWNIGIFLCIRCAGIHRNLGVHISRVKSVNLDTWTPEQVVSLQQMGNSRA 94 (145)
Q Consensus 16 ~~~~~l~~l~~~-p~N~~CaDCg~~~p~w~s~~~GvflC~~Cs~iHR~lg~~is~Vksl~ld~w~~~~i~~l~~~GN~~~ 94 (145)
..+++|++|++. |+|+.|+|||+++|+|+|++||||||+.|+|+||.||+|||+||||+||+|++++|+.|+.+||.++
T Consensus 7 ~a~~~l~~L~~~~p~N~~CaDCga~~P~WaS~nlGvflCi~CSGiHR~LG~hISkVKSltLD~Wt~e~l~~m~~~GN~~a 86 (163)
T 3sub_A 7 AAVEFINRLKKEDESNNKCFDCGISNPDWVSVNHGIFLCINCSGVHRSLGVHISIVRSIKMDIFTDEQLKYIDKGGNKKC 86 (163)
T ss_dssp HHHHHHHHHHHHSGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHHTCTTTCCEEETTTCCCCHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHHHhCCCCCCccccCCCCCCCeEEecCCeeEHHhhhHHhcCCCCCCCeeeeccccCcCHHHHHHHHhhCHHHH
Confidence 356788888875 8999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCC
Q psy5674 95 RAVYEANIPDN 105 (145)
Q Consensus 95 n~~~e~~~p~~ 105 (145)
|++|++..++.
T Consensus 87 n~~~e~~g~~~ 97 (163)
T 3sub_A 87 QTYLENYGISD 97 (163)
T ss_dssp HHHHHHTTCTT
T ss_pred HHHHHHcCCcc
Confidence 99999987654
No 12
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=100.00 E-value=3.9e-35 Score=250.63 Aligned_cols=123 Identities=33% Similarity=0.638 Sum_probs=109.5
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCccCCCCCCCCeeecccceeeecccccccccCCCccceeeecccCCCCHHHHHHHHhhc
Q psy5674 11 KQIQDKCQNLLMQMLKDDDNKYCVDCDAKGPRWASWNIGIFLCIRCAGIHRNLGVHISRVKSVNLDTWTPEQVVSLQQMG 90 (145)
Q Consensus 11 k~~~e~~~~~l~~l~~~p~N~~CaDCg~~~p~w~s~~~GvflC~~Cs~iHR~lg~~is~Vksl~ld~w~~~~i~~l~~~G 90 (145)
+.+++.++.+++.|++.|+|+.|+|||+++|+|+|+|+|||+|+.|+|+||.||+|||+|||++||.|+++++.+|+.+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~~~~~c~~c~~~hr~lg~~~s~vrsl~ld~w~~~~~~l~~~~G 83 (497)
T 3lvq_E 4 GEPHDLTKLLIAEVKSRPGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSELLLALNMG 83 (497)
T ss_dssp ----CHHHHHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCGGGGTTTTTCC
T ss_pred chhHHHHHHHHHHHhcCCCCCcccCCCCCCCCEEEechhHHhHHhhHHHHHhhccccceecccccCCCCHHHHHHHHHHh
Confidence 45788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHhhCCCC-CCCCCCc---hHHHHHHHHHHhhcccccCCC
Q psy5674 91 NSRARAVYEANIPDN-FRRPQTD---STLEAFIRAKYEQKKYIASEW 133 (145)
Q Consensus 91 N~~~n~~~e~~~p~~-~~~p~~~---~~~~~fI~~KY~~k~f~~~~~ 133 (145)
|..+|.+||+.+|.. ..+|.+. ..+++||++||++++|..+..
T Consensus 84 N~~an~i~E~~lp~~~~~kP~~~s~~~~re~fIraky~~~~f~~~~~ 130 (497)
T 3lvq_E 84 NTSFNEVMEAQLPSHGGPKPSAESDMGTRRDYIMAKYVEHRFARRCT 130 (497)
T ss_dssp HHHHHHHHTTTCCSSSCSCCCTTCCHHHHHHHHHHHHTTCTTSCCCC
T ss_pred hHHHHHHHHhhcccccCCCCCCcCcHHHHHHHHHHHhhccccccccc
Confidence 999999999999864 3455432 347899999999999987653
No 13
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=100.00 E-value=2.2e-34 Score=230.38 Aligned_cols=120 Identities=31% Similarity=0.666 Sum_probs=108.6
Q ss_pred HHHHHHHHHHhcCCCCCCccCCCCCCCCeeecccceeeecccccccccCCCccceeeecccCCCCHHHHHHHHhhccHHH
Q psy5674 15 DKCQNLLMQMLKDDDNKYCVDCDAKGPRWASWNIGIFLCIRCAGIHRNLGVHISRVKSVNLDTWTPEQVVSLQQMGNSRA 94 (145)
Q Consensus 15 e~~~~~l~~l~~~p~N~~CaDCg~~~p~w~s~~~GvflC~~Cs~iHR~lg~~is~Vksl~ld~w~~~~i~~l~~~GN~~~ 94 (145)
|..+++++.|+..|+|+.|+|||+++|+|+|++||+|+|++|+|+||.||+|||+|||++||.|+++++..|..+||..+
T Consensus 2 ~~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~g~~~c~~c~~~hr~lg~~is~v~s~~~d~~~~~~l~~~~~~GN~~~ 81 (278)
T 1dcq_A 2 ELTKEIISEVQRMTGNDVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDVLGTSELLLAKNIGNAGF 81 (278)
T ss_dssp -CHHHHHHHHHHSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCGGGGHHHHHSCHHHH
T ss_pred chHHHHHHHHHcCCCCCcCCCCCCCCCCeEEecCCeEEcHHHHHHHhhcCCCcceeeeeecCCCCHHHHHHHHHcCcHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCCC-CCCCc---hHHHHHHHHHHhhcccccCCCC
Q psy5674 95 RAVYEANIPDNFR-RPQTD---STLEAFIRAKYEQKKYIASEWV 134 (145)
Q Consensus 95 n~~~e~~~p~~~~-~p~~~---~~~~~fI~~KY~~k~f~~~~~~ 134 (145)
|++||+.+|.... +|++. ..+++||+.||..++|..+...
T Consensus 82 n~i~e~~l~~~~~~kP~~~s~~~~~~~fI~aKYl~~~f~~~~~~ 125 (278)
T 1dcq_A 82 NEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYARKKHA 125 (278)
T ss_dssp HHHHTTTCCSSSCCSCCTTCCHHHHHHHHHHHHTTCTTSCCCSS
T ss_pred HHHHHhhCChhhcCCCCCCCCHHHHHHHHHHHHHHhhccccccc
Confidence 9999999987643 56543 3468999999999999876543
No 14
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.97 E-value=2.9e-31 Score=218.11 Aligned_cols=94 Identities=33% Similarity=0.712 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCccCCCCCCCCeeecccceeeecccccccccCCCccceeeecccCCCCHHHHHHHHhh
Q psy5674 10 QKQIQDKCQNLLMQMLKDDDNKYCVDCDAKGPRWASWNIGIFLCIRCAGIHRNLGVHISRVKSVNLDTWTPEQVVSLQQM 89 (145)
Q Consensus 10 ~k~~~e~~~~~l~~l~~~p~N~~CaDCg~~~p~w~s~~~GvflC~~Cs~iHR~lg~~is~Vksl~ld~w~~~~i~~l~~~ 89 (145)
++-..+.++++|+.|+..|+|+.|+|||+++|+|||++||||+|+.|+|+||.||+|||+|||++||+|++++|+.|+.+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~n~~c~dc~~~~~~~~~~~~~~~~c~~c~~~hr~~~~~~s~v~s~~~~~~~~~~~~~~~~~ 96 (329)
T 3o47_A 17 QGMASPRTRKVLKEVRVQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKMKAG 96 (329)
T ss_dssp ------CHHHHHHHHHHSTTTTBCTTTCCBSCCEEEGGGTEEECHHHHHHHHHHCTTTCCEEESSSCCCCHHHHHHHHHC
T ss_pred cccCCHHHHHHHHHHHcCCCCCcCCCCCCCCCCeEEecCCEEEChhhhhhhcccCCCcCEEeeccccCCCHHHHHHHHHh
Confidence 33355677889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHhhCC
Q psy5674 90 GNSRARAVYEANIP 103 (145)
Q Consensus 90 GN~~~n~~~e~~~p 103 (145)
||.++|++||+...
T Consensus 97 gN~~~n~~~e~~~~ 110 (329)
T 3o47_A 97 GNAKFREFLESQED 110 (329)
T ss_dssp CHHHHHHHHHTCSS
T ss_pred CcHHHHHHHHhcCC
Confidence 99999999998754
No 15
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=90.36 E-value=0.14 Score=30.47 Aligned_cols=38 Identities=32% Similarity=0.732 Sum_probs=31.3
Q ss_pred CCCCCccCCCCC-CCCeeecccceeeecccccccccCCC
Q psy5674 28 DDNKYCVDCDAK-GPRWASWNIGIFLCIRCAGIHRNLGV 65 (145)
Q Consensus 28 p~N~~CaDCg~~-~p~w~s~~~GvflC~~Cs~iHR~lg~ 65 (145)
.....|++|++. -|.|=.-..|..||-.|.-.++..|.
T Consensus 2 ~~~~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~~~~ 40 (46)
T 1gnf_A 2 SEARECVNCGATATPLWRRDRTGHYLCNACGLYHKMNGQ 40 (46)
T ss_dssp CCSCCCTTTCCCCCSSCBCCTTCCCBCSHHHHHHHHTCS
T ss_pred CCCCCCCCcCCCCCCcCccCCCCCccchHHHHHHHHcCC
Confidence 356889999997 67898888999999999887776554
No 16
>1u5k_A Hypothetical protein; OBD-fold, Zn-binding, recombination,replication; 2.00A {Deinococcus radiodurans} SCOP: b.40.4.13 g.45.1.2 PDB: 1w3s_A 2v1c_C
Probab=89.92 E-value=0.44 Score=36.67 Aligned_cols=51 Identities=22% Similarity=0.440 Sum_probs=38.9
Q ss_pred CCCCCccCCCCCCCCeeecccceeeecccccccccCCCccceeeecccCCCCHHHHHHHHhhccHHH
Q psy5674 28 DDNKYCVDCDAKGPRWASWNIGIFLCIRCAGIHRNLGVHISRVKSVNLDTWTPEQVVSLQQMGNSRA 94 (145)
Q Consensus 28 p~N~~CaDCg~~~p~w~s~~~GvflC~~Cs~iHR~lg~~is~Vksl~ld~w~~~~i~~l~~~GN~~~ 94 (145)
|.=..|+.||.++..+.+...|.++|..|...+ ..+++++..|..+-+...
T Consensus 148 p~l~~C~~cg~~~~~~fs~~~Gg~~c~~~~~~~----------------~l~~~~l~~l~~l~~~~~ 198 (244)
T 1u5k_A 148 PQTARCARCGAPDPEHPDPLGGQLLCSKCAALP----------------PYPPAVLDFLRHAVRRTV 198 (244)
T ss_dssp CCCSBCTTTCCBSCCEECTTTSSEECTTTCSSC----------------CCCHHHHHHHHHTTTSCH
T ss_pred CCcCccccCCCCCCCcEecccCEEECcccCCCC----------------CCCHHHHHHHHHHHhCCH
Confidence 667899999999777889999999999986422 357788888876544433
No 17
>2kgo_A Uncharacterized protein YBII; Zn finger, partially disordered, structural proteomics, META binding, zinc-finger, structural genomics; NMR {Escherichia coli}
Probab=86.60 E-value=0.087 Score=36.82 Aligned_cols=33 Identities=27% Similarity=0.476 Sum_probs=23.3
Q ss_pred CCCCccCCCCCCC-Ceeecccceeeecccccccc
Q psy5674 29 DNKYCVDCDAKGP-RWASWNIGIFLCIRCAGIHR 61 (145)
Q Consensus 29 ~N~~CaDCg~~~p-~w~s~~~GvflC~~Cs~iHR 61 (145)
.-.+|.+||.+=| .=.-.--++..|+.|...+-
T Consensus 55 syG~C~~CGe~Ip~~RL~A~P~a~~Cv~Cq~~~E 88 (108)
T 2kgo_A 55 SLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 88 (108)
T ss_dssp CCSBCTTTCCBCCHHHHHHSTTCCSCHHHHHHHH
T ss_pred cCceecccCCcccHHHHhcCCCccccHHHHHHHH
Confidence 4689999999843 22233457889999998654
No 18
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=86.33 E-value=0.25 Score=31.20 Aligned_cols=39 Identities=15% Similarity=0.369 Sum_probs=32.1
Q ss_pred CCCCCCccCCCCC-CCCeeecccceeeecccccccccCCC
Q psy5674 27 DDDNKYCVDCDAK-GPRWASWNIGIFLCIRCAGIHRNLGV 65 (145)
Q Consensus 27 ~p~N~~CaDCg~~-~p~w~s~~~GvflC~~Cs~iHR~lg~ 65 (145)
......|++|++. -|.|=.-..|-.||-.|.-..+..|.
T Consensus 4 ~~~~~~C~~C~tt~Tp~WR~gp~G~~LCNACGl~~~~~~~ 43 (63)
T 3dfx_A 4 RRAGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNI 43 (63)
T ss_dssp CCTTCCCTTTCCSCCSSCCCCTTSCCCCHHHHHHHHHHSS
T ss_pred CCCCCcCCCcCCCCCCccCCCCCCCchhhHHHHHHHHcCC
Confidence 4567899999987 67898888999999999887766553
No 19
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=86.20 E-value=0.28 Score=28.67 Aligned_cols=34 Identities=26% Similarity=0.546 Sum_probs=28.4
Q ss_pred CCccCCCCC-CCCeeecccceeeecccccccccCC
Q psy5674 31 KYCVDCDAK-GPRWASWNIGIFLCIRCAGIHRNLG 64 (145)
Q Consensus 31 ~~CaDCg~~-~p~w~s~~~GvflC~~Cs~iHR~lg 64 (145)
..|++|++. -|.|=.-..|-.||-.|.-..+..|
T Consensus 2 ~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~~~ 36 (43)
T 2vut_I 2 TTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHG 36 (43)
T ss_dssp CCCSSSCCCCCSCCEECTTSCEECHHHHHHHHHHS
T ss_pred CcCCccCCCCCCccccCCCCCcccHHHHHHHHHhC
Confidence 479999987 5789988899999999987766554
No 20
>1tjl_A DNAK suppressor protein; DKSA, transcription factor, RNA polymerase, stringent response, PPGPP, riken structural genomics/proteomics initiative; 2.00A {Escherichia coli} SCOP: a.2.14.1 g.39.1.13 PDB: 3h3p_S
Probab=86.05 E-value=0.31 Score=35.68 Aligned_cols=42 Identities=24% Similarity=0.392 Sum_probs=27.2
Q ss_pred HHHHHHhcCCCCCCccCCCCCCCC-eeecccceeeecccccccc
Q psy5674 19 NLLMQMLKDDDNKYCVDCDAKGPR-WASWNIGIFLCIRCAGIHR 61 (145)
Q Consensus 19 ~~l~~l~~~p~N~~CaDCg~~~p~-w~s~~~GvflC~~Cs~iHR 61 (145)
..+.++- .+.-..|.+||.+=|. =.-.--++.+|+.|...|-
T Consensus 101 ~Al~ri~-~g~yg~C~~Cg~~Ip~~Rl~a~P~a~~Ci~Cq~~~E 143 (151)
T 1tjl_A 101 KTLKKVE-DEDFGYCESCGVEIGIRRLEARPTADLCIDCKTLAE 143 (151)
T ss_dssp HHHHHHH-TTCCSBCSSSSCBCCHHHHHHCTTCCSCHHHHHHHH
T ss_pred HHHHHHh-CCCCceeCCCCCcchHHHHhcCCCcchhHHHHHHHH
Confidence 3444433 3567899999998431 2223457889999988663
No 21
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=83.88 E-value=0.53 Score=29.92 Aligned_cols=37 Identities=24% Similarity=0.514 Sum_probs=31.2
Q ss_pred CCCCCccCCCCC-CCCeeecccceeeecccccccccCC
Q psy5674 28 DDNKYCVDCDAK-GPRWASWNIGIFLCIRCAGIHRNLG 64 (145)
Q Consensus 28 p~N~~CaDCg~~-~p~w~s~~~GvflC~~Cs~iHR~lg 64 (145)
.....|++|++. -|.|-.-..|-.||-.|.-..+..|
T Consensus 7 ~~~~~C~~C~t~~Tp~WR~gp~G~~LCNaCGl~~~~~~ 44 (66)
T 4gat_A 7 NGPTTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHG 44 (66)
T ss_dssp SSSCCCTTTCCCCCSSCEEETTTEEECHHHHHHHHHHC
T ss_pred CCCCCCCCCCCCCCCcCCcCCCCCCccHHHHHHHHHcC
Confidence 567899999986 6889988899999999987766654
No 22
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=81.60 E-value=0.5 Score=33.10 Aligned_cols=35 Identities=34% Similarity=0.786 Sum_probs=28.4
Q ss_pred CCCccCCCCC-CCCeeecccceeeecccccccccCC
Q psy5674 30 NKYCVDCDAK-GPRWASWNIGIFLCIRCAGIHRNLG 64 (145)
Q Consensus 30 N~~CaDCg~~-~p~w~s~~~GvflC~~Cs~iHR~lg 64 (145)
.+.|++||+. -|.|=.-..|-+||..|.-.++..|
T Consensus 5 ~~~C~~Cg~~~Tp~WRr~~~g~~lCnaCgl~~Kl~G 40 (115)
T 4hc9_A 5 GRECVNCGATSTPLWRRDGTGHYLCNACGLYHKMNG 40 (115)
T ss_dssp -CCCTTTCCSCCSSCEECTTSCEECHHHHHHHHHHS
T ss_pred CCCCCCCCCccCCcceECCCCCCcCcchhhhhhhcc
Confidence 5789999986 6889988899999999987665444
No 23
>1d4u_A Nucleotide excision repair protein XPA (XPA-MBD); DNA repair, loop-rich domain, relaxation, DNA binding protein; NMR {Homo sapiens} SCOP: a.6.1.2 g.39.1.5 PDB: 1xpa_A
Probab=79.92 E-value=0.51 Score=32.97 Aligned_cols=33 Identities=15% Similarity=0.280 Sum_probs=25.1
Q ss_pred CCCCCccCCCCCCC-Ceeecccceeeeccccccc
Q psy5674 28 DDNKYCVDCDAKGP-RWASWNIGIFLCIRCAGIH 60 (145)
Q Consensus 28 p~N~~CaDCg~~~p-~w~s~~~GvflC~~Cs~iH 60 (145)
.+...|.+||.... .|..-+|++-||..|....
T Consensus 3 ~~~~~C~eC~~~~~d~~l~~~F~~~VC~~Cr~~~ 36 (111)
T 1d4u_A 3 FDYVICEECGKEFMDSYLMDHFDLPTCDDCRDAD 36 (111)
T ss_dssp CCCEECTTTCCEESCSSSTTTTSCCCCTTTCSSS
T ss_pred CCCCccccCCChhhHHHHHHhCCeeechhhcccc
Confidence 34567999998733 3446689999999998753
No 24
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=78.50 E-value=4.4 Score=28.87 Aligned_cols=54 Identities=17% Similarity=0.331 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCccCCCCCC-----CCeeecccceeeeccccccc
Q psy5674 6 EKERQKQIQDKCQNLLMQMLKDDDNKYCVDCDAKG-----PRWASWNIGIFLCIRCAGIH 60 (145)
Q Consensus 6 ~~~~~k~~~e~~~~~l~~l~~~p~N~~CaDCg~~~-----p~w~s~~~GvflC~~Cs~iH 60 (145)
|++|-+.|.+..+.+ +.-....+...|+-|+.+- +.-.+.+-...+|..|++.+
T Consensus 32 E~~ri~kL~~~l~~~-k~~~~~~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~ 90 (134)
T 1zbd_B 32 EQERIGRLVDRLETM-RKNVAGDGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVET 90 (134)
T ss_dssp HHHHHHHHHHHHHHH-HHTCCSCSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEEC
T ss_pred HHHHHHHHHHHHHHH-HHHhccCCCccccccCCCcccccCCCCCCCCCCcccccccCCcc
Confidence 344444444444432 2222346788999999873 33445667777888888776
No 25
>3g9m_A Glucocorticoid receptor; glucocorticoid, DNA-binding, allostery, lever ARM, transcription, hormone; HET: DNA; 1.61A {Rattus norvegicus} SCOP: g.39.1.2 PDB: 3g6p_A* 3g6q_B* 3g6r_B* 3g6u_A* 3g8u_A* 3g8x_A* 3g97_B* 3g99_A* 3g9i_A* 3g9j_A* 3fyl_A* 3g9o_B* 3g9p_B* 3g6t_A* 1r4o_A 1r4r_A 1glu_A* 1gdc_A 2gda_A 1rgd_A ...
Probab=77.33 E-value=0.77 Score=30.60 Aligned_cols=30 Identities=17% Similarity=0.601 Sum_probs=24.6
Q ss_pred CCCCccCCCCCCCCeeecccceeeecccccccc
Q psy5674 29 DNKYCVDCDAKGPRWASWNIGIFLCIRCAGIHR 61 (145)
Q Consensus 29 ~N~~CaDCg~~~p~w~s~~~GvflC~~Cs~iHR 61 (145)
|+..|.=||.+.. ...|||+.|..|++..|
T Consensus 1 g~~~C~VCg~~a~---g~hyGv~sC~~Ck~FFR 30 (90)
T 3g9m_A 1 GSHMCLVCSDEAS---GCHYGVLTCGSCKVFFK 30 (90)
T ss_dssp -CCBCTTTCSBCC---EEETTEEECHHHHHHHH
T ss_pred CCCcCccCCCcCc---ccccCCccchhHhHHhh
Confidence 5788999998754 46899999999999765
No 26
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=75.04 E-value=0.65 Score=29.94 Aligned_cols=37 Identities=22% Similarity=0.502 Sum_probs=28.4
Q ss_pred CCCCCccCCCCC-CCCeee--cccceeeecccccccccCCC
Q psy5674 28 DDNKYCVDCDAK-GPRWAS--WNIGIFLCIRCAGIHRNLGV 65 (145)
Q Consensus 28 p~N~~CaDCg~~-~p~w~s--~~~GvflC~~Cs~iHR~lg~ 65 (145)
.....|++|++. -|.|=. -.-| .||-.|.-..+..+.
T Consensus 6 ~~~~~C~nC~tt~Tp~WRrg~~~~g-~LCNACGl~~~~~~~ 45 (71)
T 2kae_A 6 KKSFQCSNCSVTETIRWRNIRSKEG-IQCNACFIYQRKYNK 45 (71)
T ss_dssp --CCCCSSSCCSCCSSCCCCSSSSC-CCSSHHHHHHHHHHS
T ss_pred CCCCcCCccCCCCCCccccCCCCCC-ccchHHHHHHHHhCC
Confidence 356889999986 678887 5677 899999887776553
No 27
>1hcq_A Protein (estrogen receptor); protein-DNA complex, complexed with drug, transcription/DNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: g.39.1.2 PDB: 1hcp_A 4aa6_A
Probab=71.41 E-value=1.5 Score=28.83 Aligned_cols=31 Identities=19% Similarity=0.797 Sum_probs=25.7
Q ss_pred CCCCccCCCCCCCCeeecccceeeeccccccccc
Q psy5674 29 DNKYCVDCDAKGPRWASWNIGIFLCIRCAGIHRN 62 (145)
Q Consensus 29 ~N~~CaDCg~~~p~w~s~~~GvflC~~Cs~iHR~ 62 (145)
....|.=||.+.. ...||++.|..|++..|-
T Consensus 3 ~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 33 (84)
T 1hcq_A 3 ETRYCAVCNDYAS---GYHYGVWSCEGCKAFFKR 33 (84)
T ss_dssp CCCBCTTTCSBCC---EEETTEEECHHHHHHHHH
T ss_pred CCCcCcEECCCCC---CeeeCccchHHhhhhhhh
Confidence 4578999998654 569999999999998874
No 28
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=70.20 E-value=11 Score=27.39 Aligned_cols=35 Identities=20% Similarity=0.529 Sum_probs=27.9
Q ss_pred CCCCCccCCCCC-----CCCeeecccceeeeccccccccc
Q psy5674 28 DDNKYCVDCDAK-----GPRWASWNIGIFLCIRCAGIHRN 62 (145)
Q Consensus 28 p~N~~CaDCg~~-----~p~w~s~~~GvflC~~Cs~iHR~ 62 (145)
.+...|+-|+++ ++.-.+.+-...+|..|...++.
T Consensus 66 ~~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~~~~~ 105 (153)
T 2zet_C 66 LNETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSHAHPE 105 (153)
T ss_dssp GGGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEECCSS
T ss_pred CCCccchhhcCccccccCCCCcCCCCCchhhcccccccCC
Confidence 368899999997 56666778888899999976653
No 29
>2nll_B Protein (thyroid hormone receptor); complex (transcription regulation/DNA), DNA-binding, nuclear protein, zinc- finger, multigene family; HET: DNA 5IU; 1.90A {Homo sapiens} SCOP: g.39.1.2 PDB: 3m9e_A*
Probab=67.75 E-value=1.4 Score=30.09 Aligned_cols=29 Identities=28% Similarity=0.716 Sum_probs=23.8
Q ss_pred CCccCCCCCCCCeeecccceeeeccccccccc
Q psy5674 31 KYCVDCDAKGPRWASWNIGIFLCIRCAGIHRN 62 (145)
Q Consensus 31 ~~CaDCg~~~p~w~s~~~GvflC~~Cs~iHR~ 62 (145)
..|.=||.+.. ...|||+.|..|++..|-
T Consensus 2 ~~C~VCgd~a~---g~hyGv~sC~aCk~FFRR 30 (103)
T 2nll_B 2 ELCVVCGDKAT---GYHYRCITCEGCKGFFRR 30 (103)
T ss_dssp CBCTTTCSBCC---SEETTEECCHHHHHHHHH
T ss_pred CCCeEeCCcCc---CeecCcccHHHhhhhhee
Confidence 46888997654 468999999999998764
No 30
>1r4i_A Androgen receptor; AR, steroid receptor, protein-DNA complex, transcription/DNA complex; 3.10A {Rattus norvegicus} SCOP: g.39.1.2
Probab=67.65 E-value=1.3 Score=30.50 Aligned_cols=32 Identities=19% Similarity=0.478 Sum_probs=25.6
Q ss_pred CCCCCccCCCCCCCCeeecccceeeeccccccccc
Q psy5674 28 DDNKYCVDCDAKGPRWASWNIGIFLCIRCAGIHRN 62 (145)
Q Consensus 28 p~N~~CaDCg~~~p~w~s~~~GvflC~~Cs~iHR~ 62 (145)
+.+..|.=||.+.. ...||++.|..|++..|-
T Consensus 5 ~~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 36 (105)
T 1r4i_A 5 PPQKTCLICGDEAS---GAHYGALTCGSCKVFFKR 36 (105)
T ss_dssp -CCCBCSSSCSBEE---EEETTEEEEHHHHHHHHH
T ss_pred CCCCCCcEeCCCCC---ceEeCCcchhhhhhhhce
Confidence 45778999997543 568999999999998764
No 31
>2han_B Ecdysone receptor; transcription regulation, transcription factor, DNA-binding, nuclear protein, nuclear receptor, zinc finger; 1.95A {Drosophila melanogaster} SCOP: g.39.1.2 PDB: 1r0o_B 1r0n_B
Probab=66.94 E-value=2.1 Score=30.04 Aligned_cols=32 Identities=19% Similarity=0.647 Sum_probs=26.3
Q ss_pred CCCCCccCCCCCCCCeeecccceeeeccccccccc
Q psy5674 28 DDNKYCVDCDAKGPRWASWNIGIFLCIRCAGIHRN 62 (145)
Q Consensus 28 p~N~~CaDCg~~~p~w~s~~~GvflC~~Cs~iHR~ 62 (145)
..+..|.=||.+.. ...|||+.|..|++..|-
T Consensus 6 ~~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 37 (119)
T 2han_B 6 VQEELCLVCGDRAS---GYHYNALTCEGCKGFFRR 37 (119)
T ss_dssp CCSCBCTTTCSBCC---EEETTEEECHHHHHHHHH
T ss_pred CCCCcCeEeCCcCC---cceECchhHHhhHHhhhh
Confidence 34678999998654 569999999999998774
No 32
>2ebl_A COUP transcription factor 1; DNA-binding, metal-binding, nuclear protein, receptor, transcription regulation, zinc, EAR3, erbal3 tfcoup1; NMR {Homo sapiens}
Probab=66.37 E-value=1.7 Score=28.89 Aligned_cols=32 Identities=25% Similarity=0.572 Sum_probs=26.4
Q ss_pred CCCCCccCCCCCCCCeeecccceeeeccccccccc
Q psy5674 28 DDNKYCVDCDAKGPRWASWNIGIFLCIRCAGIHRN 62 (145)
Q Consensus 28 p~N~~CaDCg~~~p~w~s~~~GvflC~~Cs~iHR~ 62 (145)
+.+..|.=||.+.. ...||++.|..|++..|-
T Consensus 5 ~~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 36 (89)
T 2ebl_A 5 SSGIECVVCGDKSS---GKHYGQFTCEGCKSFFKR 36 (89)
T ss_dssp CSSCBCTTTCSBCC---SEETTEECCHHHHHHHHH
T ss_pred CCCCCCcEeCCCCc---ceEeCchhhHHhhhhhhe
Confidence 45678999998755 458999999999998864
No 33
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=66.22 E-value=3.2 Score=25.31 Aligned_cols=30 Identities=13% Similarity=0.280 Sum_probs=22.2
Q ss_pred CCccCCCCCCCCeeecccceeeecccccccc
Q psy5674 31 KYCVDCDAKGPRWASWNIGIFLCIRCAGIHR 61 (145)
Q Consensus 31 ~~CaDCg~~~p~w~s~~~GvflC~~Cs~iHR 61 (145)
..|.+||..... ....-|..+|..|.-+-.
T Consensus 12 ~~Cp~C~~~~lv-~D~~~ge~vC~~CGlVl~ 41 (58)
T 1dl6_A 12 VTCPNHPDAILV-EDYRAGDMICPECGLVVG 41 (58)
T ss_dssp CSBTTBSSSCCE-ECSSSCCEECTTTCCEEC
T ss_pred ccCcCCCCCcee-EeCCCCeEEeCCCCCEEe
Confidence 479999986632 245679999999976643
No 34
>2han_A Protein ultraspiracle; transcription regulation, transcription factor, DNA-binding, nuclear protein, nuclear receptor, zinc finger; 1.95A {Drosophila melanogaster} SCOP: g.39.1.2
Probab=65.76 E-value=2 Score=28.76 Aligned_cols=31 Identities=19% Similarity=0.678 Sum_probs=25.3
Q ss_pred CCCCccCCCCCCCCeeecccceeeeccccccccc
Q psy5674 29 DNKYCVDCDAKGPRWASWNIGIFLCIRCAGIHRN 62 (145)
Q Consensus 29 ~N~~CaDCg~~~p~w~s~~~GvflC~~Cs~iHR~ 62 (145)
....|.=||.+.. ...||++.|..|++..|-
T Consensus 9 ~~~~C~VCgd~a~---g~hyGv~sC~aCk~FFRR 39 (93)
T 2han_A 9 SKHLCSICGDRAS---GKHYGVYSCEGCKGFFKR 39 (93)
T ss_dssp -CCBCTTTCSBCC---EEETTEEECHHHHHHHHH
T ss_pred CCCCCcEeCCCCc---CeecCcchhHHHHHHHHh
Confidence 4678999998654 569999999999998764
No 35
>2kq9_A DNAK suppressor protein; zinc binding protein, structural genomics, PSI-2, protein ST initiative; NMR {Agrobacterium tumefaciens str}
Probab=65.42 E-value=1.4 Score=30.44 Aligned_cols=42 Identities=17% Similarity=0.248 Sum_probs=26.3
Q ss_pred HHHHHHHHHhcCCCCCCccCCCCCCCC-eeecccceeeeccccc
Q psy5674 16 KCQNLLMQMLKDDDNKYCVDCDAKGPR-WASWNIGIFLCIRCAG 58 (145)
Q Consensus 16 ~~~~~l~~l~~~p~N~~CaDCg~~~p~-w~s~~~GvflC~~Cs~ 58 (145)
..+..+.++- .+.-.+|.+||.+=|. =.-.--++..|+.|..
T Consensus 68 ~i~~Al~ri~-~g~yg~C~~Cg~~I~~~Rl~a~P~a~~Ci~Cq~ 110 (112)
T 2kq9_A 68 AIDAALARIA-SGTFGTCVKCGKRISEDRLKAVPYTPFCQECAA 110 (112)
T ss_dssp HHHHHHHHHH-HTCCSEETTTTEECCHHHHHHCSCCSSCHHHHH
T ss_pred HHHHHHHhhh-CCCcCeeCCCCCcccHHHHhcCCCcchhHHHHh
Confidence 3444555554 4677899999987331 1122346778888864
No 36
>1cit_A NGFI-B, protein (orphan nuclear receptor NGFI-B); early immediate response gene product, transcription factor, monomeric protein-DNA complex; HET: DNA; 2.70A {Rattus norvegicus} SCOP: g.39.1.2
Probab=62.47 E-value=2.9 Score=27.80 Aligned_cols=28 Identities=21% Similarity=0.624 Sum_probs=22.9
Q ss_pred CccCCCCCCCCeeecccceeeeccccccccc
Q psy5674 32 YCVDCDAKGPRWASWNIGIFLCIRCAGIHRN 62 (145)
Q Consensus 32 ~CaDCg~~~p~w~s~~~GvflC~~Cs~iHR~ 62 (145)
.|.=||.+.. ...||++.|..|++..|-
T Consensus 2 ~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 29 (89)
T 1cit_A 2 RCAVCGDNAS---CQHYGVRTCEGCKGFFKR 29 (89)
T ss_dssp CCSSSCCCCC---EEETTEEECHHHHHHHHH
T ss_pred CCeEeCCCCc---ceEeCccchhhhhhhcee
Confidence 5888887654 568999999999998764
No 37
>1ynw_B Retinoic acid receptor RXR-alpha, retinoid X receptor; VDR, nuclear receptor, protein-DNA complex, transcripti complex; 3.00A {Homo sapiens} SCOP: g.39.1.2
Probab=62.45 E-value=2.1 Score=29.08 Aligned_cols=30 Identities=20% Similarity=0.698 Sum_probs=23.5
Q ss_pred CCCccCCCCCCCCeeecccceeeeccccccccc
Q psy5674 30 NKYCVDCDAKGPRWASWNIGIFLCIRCAGIHRN 62 (145)
Q Consensus 30 N~~CaDCg~~~p~w~s~~~GvflC~~Cs~iHR~ 62 (145)
...|.=||.+.. ...||++.|..|++..|-
T Consensus 3 ~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 32 (99)
T 1ynw_B 3 KHICAICGDRSS---GKHYGVYSCEGCKGFFKR 32 (99)
T ss_dssp --CBTTTBSCCC---BCCTTSCBCSHHHHHHHH
T ss_pred CCCCceeCCCCc---ceeeCccchHHHHHHHHh
Confidence 356999998654 568999999999998764
No 38
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=62.18 E-value=3.7 Score=28.55 Aligned_cols=38 Identities=16% Similarity=0.381 Sum_probs=31.6
Q ss_pred CCCCCccCCCCC-CCCeeecccceeeecccccccccCCC
Q psy5674 28 DDNKYCVDCDAK-GPRWASWNIGIFLCIRCAGIHRNLGV 65 (145)
Q Consensus 28 p~N~~CaDCg~~-~p~w~s~~~GvflC~~Cs~iHR~lg~ 65 (145)
.....|++|+.. -|.|=.-..|-.||-.|.-..+..+.
T Consensus 57 ~~~~~C~~C~t~~tp~WRr~~~g~~lCNaCgl~~~~~~~ 95 (115)
T 4hc9_A 57 RAGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNI 95 (115)
T ss_dssp CTTCCCTTTCCSCCSSCEECTTSCEECHHHHHHHHHHSS
T ss_pred cccccCCCcCCCCcceeEECCCCCCcchHHHHHHHHhCC
Confidence 457899999986 68999989999999999887766553
No 39
>1dsz_A RAR-alpha, retinoic acid receptor alpha; RAR, nuclear receptor, protein-DNA, transcription/DNA complex; HET: DNA; 1.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1hra_A
Probab=62.10 E-value=2.2 Score=28.17 Aligned_cols=29 Identities=31% Similarity=0.770 Sum_probs=23.5
Q ss_pred CCccCCCCCCCCeeecccceeeeccccccccc
Q psy5674 31 KYCVDCDAKGPRWASWNIGIFLCIRCAGIHRN 62 (145)
Q Consensus 31 ~~CaDCg~~~p~w~s~~~GvflC~~Cs~iHR~ 62 (145)
..|.=||.+.. ...||++.|..|++..|-
T Consensus 5 ~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 33 (86)
T 1dsz_A 5 KPCFVCQDKSS---GYHYGVSACEGCKGFFRR 33 (86)
T ss_dssp -CCTTTCSCCC---SEETTEECCHHHHHHHHH
T ss_pred CCCcEECCCcc---ceeeCchhHHHHHHHHHH
Confidence 46899998664 458999999999998874
No 40
>1a6y_A Orphan nuclear receptor NR1D1; orphan receptor, DNA-binding, reverb, REV- ERB, transcription regulation, transcription/DNA complex; HET: DNA 5IU; 2.30A {Homo sapiens} SCOP: g.39.1.2 PDB: 1ga5_A* 1hlz_A
Probab=61.56 E-value=2.5 Score=28.39 Aligned_cols=31 Identities=23% Similarity=0.608 Sum_probs=24.4
Q ss_pred CCCCccCCCCCCCCeeecccceeeeccccccccc
Q psy5674 29 DNKYCVDCDAKGPRWASWNIGIFLCIRCAGIHRN 62 (145)
Q Consensus 29 ~N~~CaDCg~~~p~w~s~~~GvflC~~Cs~iHR~ 62 (145)
....|.=||.+.. ...||++.|..|++..|-
T Consensus 6 ~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 36 (94)
T 1a6y_A 6 MVLLCKVCGDVAS---GFHYGVLACEGCKGFFRR 36 (94)
T ss_dssp --CBCTTTSSBCC---EEETTEEECHHHHHHHHH
T ss_pred CCCcCcEeCCCCc---ceEeCccchhhhhhehhe
Confidence 3467999998654 568999999999998774
No 41
>2a66_A Orphan nuclear receptor NR5A2; protein-DNA complex, zinc finger, DNA- binding domain, transcription factor, FTZ-F1, C-terminal extension; 2.20A {Homo sapiens} PDB: 2ff0_A
Probab=61.47 E-value=1.7 Score=30.21 Aligned_cols=33 Identities=24% Similarity=0.699 Sum_probs=24.4
Q ss_pred CCCCCCccCCCCCCCCeeecccceeeeccccccccc
Q psy5674 27 DDDNKYCVDCDAKGPRWASWNIGIFLCIRCAGIHRN 62 (145)
Q Consensus 27 ~p~N~~CaDCg~~~p~w~s~~~GvflC~~Cs~iHR~ 62 (145)
.+.+..|.=||.+.. ...|||+.|..|++..|-
T Consensus 6 ~~~~~~C~VCgd~a~---G~HyGv~sC~aCk~FFRR 38 (113)
T 2a66_A 6 EDLEELCPVCGDKVS---GYHYGLLTCESCKGFFKR 38 (113)
T ss_dssp ----CBCTTTCCBEE---EEETTEEEEHHHHHHHHH
T ss_pred CCCCCCCcEeCCCCc---ceeeCcccHHHHHHHHhh
Confidence 345678999997643 568999999999998764
No 42
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=61.36 E-value=8.7 Score=24.70 Aligned_cols=40 Identities=20% Similarity=0.370 Sum_probs=30.1
Q ss_pred HHHHHHH-hcCCCCCCccCCCCCCCCeeecccceeeecccccc
Q psy5674 18 QNLLMQM-LKDDDNKYCVDCDAKGPRWASWNIGIFLCIRCAGI 59 (145)
Q Consensus 18 ~~~l~~l-~~~p~N~~CaDCg~~~p~w~s~~~GvflC~~Cs~i 59 (145)
+..+.++ +.+.....|.-||........ .||..|..|.-.
T Consensus 14 RK~vkkie~~q~~ky~C~fCgk~~vkR~a--~GIW~C~~C~~~ 54 (73)
T 1ffk_W 14 RVRVRDVEIKHKKKYKCPVCGFPKLKRAS--TSIWVCGHCGYK 54 (73)
T ss_pred HHHHHHHHHhcccCccCCCCCCceeEEEE--eEEEECCCCCcE
Confidence 3445555 567889999999987766554 699999999654
No 43
>1kb2_A Vitamin D3 receptor; VDR, nuclear receptor, protein-DNA complex, transcription/DNA complex; 2.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1kb4_A 1kb6_A 1ynw_A
Probab=59.67 E-value=2.3 Score=29.37 Aligned_cols=31 Identities=19% Similarity=0.598 Sum_probs=24.4
Q ss_pred CCCCccCCCCCCCCeeecccceeeeccccccccc
Q psy5674 29 DNKYCVDCDAKGPRWASWNIGIFLCIRCAGIHRN 62 (145)
Q Consensus 29 ~N~~CaDCg~~~p~w~s~~~GvflC~~Cs~iHR~ 62 (145)
....|.=||.+.. ...||++.|..|++..|-
T Consensus 5 ~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 35 (110)
T 1kb2_A 5 VPRICGVCGDRAT---GFHFNAMTCEGCKGFFRR 35 (110)
T ss_dssp --CBCTTTCSBCC---SEETTEECCHHHHHHHHH
T ss_pred cCCCCcEeCCCCC---ceEeCchhHhhhhhhhee
Confidence 3467999998654 468999999999998874
No 44
>1dsz_B RXR-alpha, retinoic acid receptor RXR-alpha; RAR, nuclear receptor, protein-DNA, transcription/DNA complex; HET: DNA; 1.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1by4_A* 1rxr_A 1r0n_A 1r0o_A 2nll_A*
Probab=57.50 E-value=1.8 Score=28.52 Aligned_cols=32 Identities=19% Similarity=0.608 Sum_probs=25.6
Q ss_pred CCCCCccCCCCCCCCeeecccceeeeccccccccc
Q psy5674 28 DDNKYCVDCDAKGPRWASWNIGIFLCIRCAGIHRN 62 (145)
Q Consensus 28 p~N~~CaDCg~~~p~w~s~~~GvflC~~Cs~iHR~ 62 (145)
..+..|.=||.+.. ...||++.|..|++..|-
T Consensus 3 ~~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 34 (85)
T 1dsz_B 3 FTKHICAICGDRSS---GKHYGVYSCEGCKGFFKR 34 (85)
T ss_dssp SCCEECTTTCCEES---SEETTEECCHHHHHHHHH
T ss_pred CCCCCCCEeCCCCC---ceeeCccchHHHHHHHHH
Confidence 34567999998654 458999999999998874
No 45
>1lo1_A Steroid hormone receptor ERR2; estrogen related receptor 2, DNA binding domain, HERR2, hormone nuclear receptor; NMR {Homo sapiens} SCOP: g.39.1.2
Probab=55.83 E-value=2.1 Score=29.02 Aligned_cols=30 Identities=17% Similarity=0.645 Sum_probs=24.6
Q ss_pred CCCccCCCCCCCCeeecccceeeeccccccccc
Q psy5674 30 NKYCVDCDAKGPRWASWNIGIFLCIRCAGIHRN 62 (145)
Q Consensus 30 N~~CaDCg~~~p~w~s~~~GvflC~~Cs~iHR~ 62 (145)
...|.=||.+.. ...||++.|..|++..|-
T Consensus 4 ~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 33 (98)
T 1lo1_A 4 KRLCLVCGDIAS---GYHYGVASCEACKAFFKR 33 (98)
T ss_dssp CCEETTTTEECS---EESSSSEECHHHHHHHHH
T ss_pred CCCCcEeCCCCc---CeeeCccchhhhhhhhee
Confidence 467889997654 568999999999998874
No 46
>4glq_A Methyl-accepting chemotaxis protein; chromophore, phytochrome, cyanobacteriochrome, phycoviolobil bilin, BILI-protein; HET: PVN; 1.77A {Thermosynechococcus elongatus} PDB: 4fof_A*
Probab=55.51 E-value=11 Score=26.84 Aligned_cols=29 Identities=3% Similarity=0.258 Sum_probs=23.4
Q ss_pred CCCHHHHHHHHhhccHHHHHHHHhhCCCC
Q psy5674 77 TWTPEQVVSLQQMGNSRARAVYEANIPDN 105 (145)
Q Consensus 77 ~w~~~~i~~l~~~GN~~~n~~~e~~~p~~ 105 (145)
.|+++|+++|..+++..+-++-.+++-..
T Consensus 132 ~w~~~ei~ll~~lA~ql~iAi~qa~l~~~ 160 (171)
T 4glq_A 132 QWQEIEIDQFSELASTGSLVLERLHFLEQ 160 (171)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 59999999999999999999988887544
No 47
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=54.16 E-value=7.5 Score=31.61 Aligned_cols=28 Identities=21% Similarity=0.621 Sum_probs=21.5
Q ss_pred CccCCCCCCCC-eeecccceeeecccccc
Q psy5674 32 YCVDCDAKGPR-WASWNIGIFLCIRCAGI 59 (145)
Q Consensus 32 ~CaDCg~~~p~-w~s~~~GvflC~~Cs~i 59 (145)
.|.+||...+. -....-|-.+|..|.-+
T Consensus 23 ~Cp~C~~~~~~lv~D~~~G~~vC~~CGlV 51 (345)
T 4bbr_M 23 TCPECKVYPPKIVERFSEGDVVCALCGLV 51 (345)
T ss_dssp CCSSCCCSSCCEEEEGGGTEEEETTTCBE
T ss_pred cCCCCCCCCCceeEECCCCcEEeCCCCCC
Confidence 79999984443 23567899999999765
No 48
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=53.69 E-value=9.7 Score=21.95 Aligned_cols=30 Identities=20% Similarity=0.542 Sum_probs=21.3
Q ss_pred CCCccCCCCCCCCeeecccceeeeccccccc
Q psy5674 30 NKYCVDCDAKGPRWASWNIGIFLCIRCAGIH 60 (145)
Q Consensus 30 N~~CaDCg~~~p~w~s~~~GvflC~~Cs~iH 60 (145)
...|.+||.....+ ...-|.++|..|..+-
T Consensus 5 ~~~CP~C~~~~l~~-d~~~gelvC~~CG~v~ 34 (50)
T 1pft_A 5 QKVCPACESAELIY-DPERGEIVCAKCGYVI 34 (50)
T ss_dssp CCSCTTTSCCCEEE-ETTTTEEEESSSCCBC
T ss_pred cEeCcCCCCcceEE-cCCCCeEECcccCCcc
Confidence 45799999854333 3456899999996653
No 49
>4hn5_A Glucocorticoid receptor; glucocorticoid receptor, steroid receptors, NGRE, repre transcription; HET: DNA; 1.90A {Homo sapiens} PDB: 4hn6_A*
Probab=53.60 E-value=4.1 Score=28.47 Aligned_cols=32 Identities=19% Similarity=0.586 Sum_probs=24.0
Q ss_pred CCCCCCccCCCCCCCCeeecccceeeecccccccc
Q psy5674 27 DDDNKYCVDCDAKGPRWASWNIGIFLCIRCAGIHR 61 (145)
Q Consensus 27 ~p~N~~CaDCg~~~p~w~s~~~GvflC~~Cs~iHR 61 (145)
.+....|.=||.+.. ...|||+.|..|++.-|
T Consensus 26 ~~~~~~C~VCgd~a~---G~HyGv~sC~aCk~FFR 57 (117)
T 4hn5_A 26 NAPPKLCLVCSDEAS---GCHYGVLTCGSCKVFFK 57 (117)
T ss_dssp ----CBCTTTCSBCC---EEETTEEECHHHHHHHH
T ss_pred CCCCCcCCcCCCcCc---ccccCCcccchhhhhhh
Confidence 355778999998765 46899999999999765
No 50
>3cbb_A HNF-4-alpha, hepatocyte nuclear factor 4-alpha, DNA binding domain, nuclear; zinc finger; 2.00A {Homo sapiens}
Probab=52.54 E-value=3.4 Score=26.74 Aligned_cols=28 Identities=25% Similarity=0.608 Sum_probs=22.6
Q ss_pred CccCCCCCCCCeeecccceeeeccccccccc
Q psy5674 32 YCVDCDAKGPRWASWNIGIFLCIRCAGIHRN 62 (145)
Q Consensus 32 ~CaDCg~~~p~w~s~~~GvflC~~Cs~iHR~ 62 (145)
.|.=||.+.. ...||++.|..|++..|-
T Consensus 2 ~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 29 (78)
T 3cbb_A 2 LCAICGDRAT---GKHYGASSCDGCKGFFRR 29 (78)
T ss_dssp BCTTTSSBCC---SEETTEECCHHHHHHHHH
T ss_pred CCeEeCCCCC---ceEeCCcchhhhceeeeE
Confidence 4778887654 458999999999998774
No 51
>3dzy_D Peroxisome proliferator-activated receptor gamma; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_D* 3e00_D* 2env_A
Probab=51.26 E-value=4.8 Score=33.51 Aligned_cols=32 Identities=25% Similarity=0.551 Sum_probs=25.0
Q ss_pred CCCCCccCCCCCCCCeeecccceeeeccccccccc
Q psy5674 28 DDNKYCVDCDAKGPRWASWNIGIFLCIRCAGIHRN 62 (145)
Q Consensus 28 p~N~~CaDCg~~~p~w~s~~~GvflC~~Cs~iHR~ 62 (145)
..+..|.=||.+... ..|||..|..|++..|.
T Consensus 48 ~~~~~C~vC~~~~~g---~hygv~~C~~C~~FFrR 79 (419)
T 3dzy_D 48 LMAIECRVCGDKASG---FHYGVHACEGCKGFFRR 79 (419)
T ss_dssp --CCCCSSSCSCCCS---BCSSSBCCHHHHHHHHH
T ss_pred CCCCcCeECCCcCCC---CccCcccchhhhHHHcc
Confidence 346789999987664 58999999999997653
No 52
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=49.24 E-value=7.4 Score=31.46 Aligned_cols=31 Identities=19% Similarity=0.524 Sum_probs=23.2
Q ss_pred CCccCCCCCCCCe-eecccceeeecccccccc
Q psy5674 31 KYCVDCDAKGPRW-ASWNIGIFLCIRCAGIHR 61 (145)
Q Consensus 31 ~~CaDCg~~~p~w-~s~~~GvflC~~Cs~iHR 61 (145)
..|.+||...|.- ....-|..+|..|.-+-.
T Consensus 22 ~~Cp~Cg~~~~~iv~D~~~G~~vC~~CG~Vl~ 53 (345)
T 3k7a_M 22 LTCPECKVYPPKIVERFSEGDVVCALCGLVLS 53 (345)
T ss_dssp CCCSTTCCSCCCCCCCSSSCSCCCSSSCCCCC
T ss_pred CcCcCCCCCCCceEEECCCCCEecCCCCeEcc
Confidence 4799999975422 245679999999988763
No 53
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=46.71 E-value=15 Score=27.83 Aligned_cols=29 Identities=21% Similarity=0.588 Sum_probs=22.5
Q ss_pred CccCCCCCCCCee-ecccceeeeccccccc
Q psy5674 32 YCVDCDAKGPRWA-SWNIGIFLCIRCAGIH 60 (145)
Q Consensus 32 ~CaDCg~~~p~w~-s~~~GvflC~~Cs~iH 60 (145)
.|.+||...+.-+ +..-|-.+|.+|.-+-
T Consensus 23 ~CPECGs~~t~IV~D~erGE~VCsdCGLVL 52 (197)
T 3k1f_M 23 TCPECKVYPPKIVERFSEGDVVCALCGLVL 52 (197)
T ss_dssp CCTTTCCSSCCEEEEGGGTEEEETTTCBBC
T ss_pred ECcCCCCcCCeEEEeCCCCEEEEcCCCCCc
Confidence 7999998544333 4679999999998864
No 54
>3po3_S Transcription elongation factor S-II; RNA polymerase II, mRNA, transcription, arrest, BACKTRACKING cleavage, transferase-DNA-RNA complex; HET: DNA BRU EPE PGE; 3.30A {Saccharomyces cerevisiae} PDB: 1y1v_S 1y1y_S 3gtm_S* 1enw_A
Probab=46.71 E-value=8.4 Score=28.59 Aligned_cols=31 Identities=16% Similarity=0.335 Sum_probs=20.4
Q ss_pred CCCccCCCCCCCCeeec-------c-cceeeeccccccc
Q psy5674 30 NKYCVDCDAKGPRWASW-------N-IGIFLCIRCAGIH 60 (145)
Q Consensus 30 N~~CaDCg~~~p~w~s~-------~-~GvflC~~Cs~iH 60 (145)
...|..||.....|.-+ . --.++|..|....
T Consensus 137 ~~~Cp~C~~~~a~~~q~Q~rsaDE~mt~f~~C~~C~~~w 175 (178)
T 3po3_S 137 RFTCGKCKEKKVSYYQLQTRSAAAPLTTFCTCEACGNRW 175 (178)
T ss_dssp SSCCSSSCCSCEECCCCCCSCTTSCCCCCEEETTTCCEE
T ss_pred CcCCCCCCCCceEEEEeecccCCCCCcEEEEcCCCCCee
Confidence 45899999987655421 1 2355899886544
No 55
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=45.62 E-value=16 Score=26.91 Aligned_cols=51 Identities=16% Similarity=0.356 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcC--CCCCCccCCCCCCCCeeecccceeeeccccc
Q psy5674 5 AEKERQKQIQDKCQNLLMQMLKD--DDNKYCVDCDAKGPRWASWNIGIFLCIRCAG 58 (145)
Q Consensus 5 ~~~~~~k~~~e~~~~~l~~l~~~--p~N~~CaDCg~~~p~w~s~~~GvflC~~Cs~ 58 (145)
++|-..+++.++ +..++... .-+..|--||..++...=--|.+.||..|..
T Consensus 12 ~~K~~~~~~r~~---~~~~v~~~~~~~e~~Ct~CG~~~~~~~HPlf~v~lC~~Ck~ 64 (159)
T 3a1b_A 12 GGKAPRKQLRER---LVYEVRQKCRNIEDICISCGSLNVTLEHPLFVGGMCQNCKN 64 (159)
T ss_dssp -----CHHHHHH---HHHHHHTTSSCGGGSBTTTCCSCCCEECSSBSSEECHHHHH
T ss_pred CCCcchHHHHHh---hhHHHHhccCCccCcccCCCCcCccccCCCccchhhHHHHH
Confidence 445555665443 34444443 4578899999988765444588999999974
No 56
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=44.67 E-value=6.4 Score=25.84 Aligned_cols=39 Identities=15% Similarity=0.411 Sum_probs=26.9
Q ss_pred HHHHH-hcCCCCCCccCCCCCCCCeeecccceeeeccccccc
Q psy5674 20 LLMQM-LKDDDNKYCVDCDAKGPRWASWNIGIFLCIRCAGIH 60 (145)
Q Consensus 20 ~l~~l-~~~p~N~~CaDCg~~~p~w~s~~~GvflC~~Cs~iH 60 (145)
.+.++ +.+...-.|..||....- ....|++.|..|...-
T Consensus 16 ~vk~ie~~q~~~y~Cp~CG~~~v~--r~atGiW~C~~Cg~~~ 55 (83)
T 1vq8_Z 16 RVAEIESEMNEDHACPNCGEDRVD--RQGTGIWQCSYCDYKF 55 (83)
T ss_dssp HHHHHHHHHHSCEECSSSCCEEEE--EEETTEEEETTTCCEE
T ss_pred HHHHHHHhccccCcCCCCCCccee--ccCCCeEECCCCCCEe
Confidence 34444 344678899999985332 4457999999997654
No 57
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=44.30 E-value=7.9 Score=23.08 Aligned_cols=32 Identities=19% Similarity=0.554 Sum_probs=23.0
Q ss_pred CCCccCCCCCCCCeeeccc--------ceeeecccccccc
Q psy5674 30 NKYCVDCDAKGPRWASWNI--------GIFLCIRCAGIHR 61 (145)
Q Consensus 30 N~~CaDCg~~~p~w~s~~~--------GvflC~~Cs~iHR 61 (145)
+..|..||.....|..+.+ -.++|..|....+
T Consensus 15 ~~~Cp~Cg~~~~~~~q~Q~rsadep~T~fy~C~~Cg~~w~ 54 (57)
T 1qyp_A 15 KITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTWR 54 (57)
T ss_dssp ECCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCCEEE
T ss_pred EeECCCCCCCEEEEEEeecccCCCCCcEEEEcCCCCCEec
Confidence 5679999998776665543 2469999976554
No 58
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=44.04 E-value=9.7 Score=20.94 Aligned_cols=28 Identities=18% Similarity=0.483 Sum_probs=19.2
Q ss_pred CccCCCCCCCCeeeccccee-eecccccc
Q psy5674 32 YCVDCDAKGPRWASWNIGIF-LCIRCAGI 59 (145)
Q Consensus 32 ~CaDCg~~~p~w~s~~~Gvf-lC~~Cs~i 59 (145)
.|..|+++++.-.--+-.+| -|..|...
T Consensus 2 lC~~C~~peT~l~~~~~~~~l~C~aCG~~ 30 (36)
T 1k81_A 2 ICRECGKPDTKIIKEGRVHLLKCMACGAI 30 (36)
T ss_dssp CCSSSCSCEEEEEEETTEEEEEEETTTEE
T ss_pred CCcCCCCCCcEEEEeCCcEEEEhhcCCCc
Confidence 58899999987665443333 58888544
No 59
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=43.69 E-value=16 Score=24.90 Aligned_cols=25 Identities=20% Similarity=0.473 Sum_probs=20.8
Q ss_pred CCCccCCCCCCCCeeecccceeeec
Q psy5674 30 NKYCVDCDAKGPRWASWNIGIFLCI 54 (145)
Q Consensus 30 N~~CaDCg~~~p~w~s~~~GvflC~ 54 (145)
...|.+|++....|+++.-|-+-|.
T Consensus 24 ~~~C~~C~~~~~~W~CL~CG~vgCg 48 (109)
T 3c5k_A 24 TQPCGDCGTIQENWVCLSCYQVYCG 48 (109)
T ss_dssp TCCCTTTCCCSSEEEETTTCCEEEC
T ss_pred CCcCccccCCCCeeeeeecCccccC
Confidence 5679999999888998877777775
No 60
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A
Probab=42.83 E-value=35 Score=27.25 Aligned_cols=30 Identities=17% Similarity=0.410 Sum_probs=20.4
Q ss_pred CCCccCCCCCCCCeeecc-------c-ceeeecccccc
Q psy5674 30 NKYCVDCDAKGPRWASWN-------I-GIFLCIRCAGI 59 (145)
Q Consensus 30 N~~CaDCg~~~p~w~s~~-------~-GvflC~~Cs~i 59 (145)
...|..||.....|.-+. . -.+.|..|...
T Consensus 268 ~~~C~~C~~~~~~~~q~Q~rsaDe~~t~f~~C~~Cg~~ 305 (309)
T 1pqv_S 268 RFTCGKCKEKKVSYYQLQTRSADEPLTTFCTCEACGNR 305 (309)
T ss_pred cccCCCCCCCeeEEEEeecccCCCCCcEEEEeCCCCCc
Confidence 458999999987775331 1 23589888543
No 61
>3j21_d 50S ribosomal protein L34E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=41.55 E-value=11 Score=25.15 Aligned_cols=28 Identities=25% Similarity=0.470 Sum_probs=18.6
Q ss_pred CCCccCCCCCC-------CC----------eeecccceeeeccccc
Q psy5674 30 NKYCVDCDAKG-------PR----------WASWNIGIFLCIRCAG 58 (145)
Q Consensus 30 N~~CaDCg~~~-------p~----------w~s~~~GvflC~~Cs~ 58 (145)
--.|+|||.+- |. -++=.|| .+|..|..
T Consensus 33 ~pkC~~cg~~L~Gi~~~Rp~~~~rlsK~~KtvsRaYG-~lC~~Cvr 77 (89)
T 3j21_d 33 IAHCAMCGRPLNGIPRGRPVEMRKLPKTKKRPERPMP-HLCPRCMR 77 (89)
T ss_dssp CCBCSSSCCBCTTCCCCCTTGGGGSCHHHHCCSSSCT-TSCHHHHH
T ss_pred CCCCCCCCCccCCccCccHHHHHhcccCCCCcCCCcc-cchHHHHH
Confidence 34699999861 11 2344699 99998853
No 62
>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A*
Probab=37.36 E-value=5.2 Score=33.87 Aligned_cols=30 Identities=20% Similarity=0.679 Sum_probs=24.0
Q ss_pred CCCCccCCCCCCCCeeecccceeeecccccccc
Q psy5674 29 DNKYCVDCDAKGPRWASWNIGIFLCIRCAGIHR 61 (145)
Q Consensus 29 ~N~~CaDCg~~~p~w~s~~~GvflC~~Cs~iHR 61 (145)
.+..|.=||.+... ..|||..|..|++..|
T Consensus 136 ~~~~C~VCg~~a~g---~hygv~sC~~Ck~FFr 165 (467)
T 3dzy_A 136 TKHICAICGDRSSG---KHYGVYSCEGCKGFFK 165 (467)
T ss_dssp -CEECTTTSSEECS---EETTEECCHHHHHHHH
T ss_pred CCCcceeCCCCCCC---CcCCCcchhhhhHhcc
Confidence 35679999987653 4899999999998765
No 63
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=36.97 E-value=54 Score=23.62 Aligned_cols=43 Identities=14% Similarity=0.371 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCccCCCCCCCCeeecc-cceeeeccccc
Q psy5674 10 QKQIQDKCQNLLMQMLKDDDNKYCVDCDAKGPRWASWN-IGIFLCIRCAG 58 (145)
Q Consensus 10 ~k~~~e~~~~~l~~l~~~p~N~~CaDCg~~~p~w~s~~-~GvflC~~Cs~ 58 (145)
.+++++..+..|..- -.|..|++|++.-.--+ .-.+.|..|..
T Consensus 90 ~~~i~~~L~~yI~~y------VlC~~C~sPdT~L~k~~r~~~l~C~ACGa 133 (148)
T 2d74_B 90 PYLIANKLKKYIKEY------VICPVCGSPDTKIIKRDRFHFLKCEACGA 133 (148)
T ss_dssp HHHHHHHHHHHHHHH------SSCSSSCCTTCCCCBSSSSBCCCCSSSCC
T ss_pred HHHHHHHHHHHHHHE------EECCCCCCcCcEEEEeCCEEEEEecCCCC
Confidence 345666666666554 46999999998877543 33346777744
No 64
>2uzg_A Ubiquitin carboxyl-terminal hydrolase 33; UBL conjugation pathway, DE-ubiquitination, alternative splicing, metal-binding, thiol protease; NMR {Homo sapiens} SCOP: g.44.1.5
Probab=36.62 E-value=21 Score=23.68 Aligned_cols=28 Identities=29% Similarity=0.672 Sum_probs=20.4
Q ss_pred CCCCCccCCCCCCCC-eeecc--cceeeecc
Q psy5674 28 DDNKYCVDCDAKGPR-WASWN--IGIFLCIR 55 (145)
Q Consensus 28 p~N~~CaDCg~~~p~-w~s~~--~GvflC~~ 55 (145)
+....|.+|++.... |+.+. -|-+-|..
T Consensus 23 ~~~~~C~~C~~~~~~lw~CL~~~Cg~vgCgr 53 (97)
T 2uzg_A 23 KSLGTCQDCKVQGPNLWACLENRCSYVGCGE 53 (97)
T ss_dssp HTTTCCSSSCCCCSSCEEECCTTCCCEECCT
T ss_pred CCCCcCcCcCCCCCCceeeecccCCCcccCC
Confidence 345789999966555 98777 77777754
No 65
>2g45_A Ubiquitin carboxyl-terminal hydrolase 5; zinc finger, hydrolase; 1.99A {Homo sapiens} SCOP: g.44.1.5 PDB: 2g43_A 2l80_A
Probab=35.24 E-value=24 Score=24.84 Aligned_cols=29 Identities=28% Similarity=0.523 Sum_probs=22.7
Q ss_pred CCCCCccCCCCCCCCeeecccceeeeccc
Q psy5674 28 DDNKYCVDCDAKGPRWASWNIGIFLCIRC 56 (145)
Q Consensus 28 p~N~~CaDCg~~~p~w~s~~~GvflC~~C 56 (145)
|....|.+|+....-|+++.-|-+-|..=
T Consensus 32 ~~~~~C~~C~~~~~LwlCL~CG~vgCgr~ 60 (129)
T 2g45_A 32 PCGWKCSKCDMRENLWLNLTDGSILCGRR 60 (129)
T ss_dssp CCBCCCSSSSCCSSEEEETTTCCEEECCB
T ss_pred CCCCcCccccCcCceEEeccCCccccCcc
Confidence 45668999999987788888887777543
No 66
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=34.12 E-value=9.4 Score=22.86 Aligned_cols=25 Identities=24% Similarity=0.494 Sum_probs=20.3
Q ss_pred CCCCccCCCCCCCCeeecccceeeecccccc
Q psy5674 29 DNKYCVDCDAKGPRWASWNIGIFLCIRCAGI 59 (145)
Q Consensus 29 ~N~~CaDCg~~~p~w~s~~~GvflC~~Cs~i 59 (145)
...+|..|++. +..|+.-|..|...
T Consensus 13 ~k~iCpkC~a~------~~~gaw~CrKCG~~ 37 (51)
T 3j21_g 13 KKYVCLRCGAT------NPWGAKKCRKCGYK 37 (51)
T ss_dssp SEEECTTTCCE------ECTTCSSCSSSSSC
T ss_pred CCccCCCCCCc------CCCCceecCCCCCc
Confidence 56789999998 45789999999654
No 67
>2ida_A Hypothetical protein; zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: g.44.1.5
Probab=33.90 E-value=9.3 Score=26.03 Aligned_cols=29 Identities=21% Similarity=0.627 Sum_probs=21.1
Q ss_pred CCCCCccCCCCCCCCeeecccceeeeccccccc
Q psy5674 28 DDNKYCVDCDAKGPRWASWNIGIFLCIRCAGIH 60 (145)
Q Consensus 28 p~N~~CaDCg~~~p~w~s~~~GvflC~~Cs~iH 60 (145)
|....|.+|++.+..|+. .++|+.|..|.
T Consensus 16 p~~~~C~~C~~~~~~Wv~----LwlCL~CG~VG 44 (102)
T 2ida_A 16 PSALGCEECLKIGSPWVH----LRICRTCGHVG 44 (102)
T ss_dssp CSSSSCHHHHTTTCCCSC----BEEESSSCCCC
T ss_pred CCCCcCccccccCCcchh----eeeeeEcCCCc
Confidence 567889999999866753 46777776554
No 68
>1ovx_A ATP-dependent CLP protease ATP-binding subunit CL; treble CLEF zinc finger, homodimer, metal binding protein; NMR {Escherichia coli} SCOP: g.39.1.11
Probab=33.75 E-value=19 Score=22.70 Aligned_cols=29 Identities=21% Similarity=0.544 Sum_probs=20.2
Q ss_pred CCccCCCCCCC--Ceeecccceeeecccccc
Q psy5674 31 KYCVDCDAKGP--RWASWNIGIFLCIRCAGI 59 (145)
Q Consensus 31 ~~CaDCg~~~p--~w~s~~~GvflC~~Cs~i 59 (145)
..|.=||.... .-....-|+++|..|..+
T Consensus 19 ~~CSFCGK~e~eV~~LIaGpgvyICdeCI~~ 49 (67)
T 1ovx_A 19 LYCSFCGKSQHEVRKLIAGPSVYICDECVDL 49 (67)
T ss_dssp CCCTTTCCCTTTSSSEEECSSCEEEHHHHHH
T ss_pred cEecCCCCCHHHHcccCCCCCCChhHHHHHH
Confidence 57999998742 222333589999999764
No 69
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=33.60 E-value=12 Score=26.20 Aligned_cols=39 Identities=15% Similarity=0.400 Sum_probs=26.9
Q ss_pred HHHHH-hcCCCCCCccCCCCCCCCeeecccceeeeccccccc
Q psy5674 20 LLMQM-LKDDDNKYCVDCDAKGPRWASWNIGIFLCIRCAGIH 60 (145)
Q Consensus 20 ~l~~l-~~~p~N~~CaDCg~~~p~w~s~~~GvflC~~Cs~iH 60 (145)
.+.++ +.+...-.|.-||.....- ...||..|..|.-.-
T Consensus 49 ~vkkiE~~q~akytCPfCGk~~vKR--~avGIW~C~~Cgk~f 88 (116)
T 3cc2_Z 49 RVAEIESEMNEDHACPNCGEDRVDR--QGTGIWQCSYCDYKF 88 (116)
T ss_dssp HHHHHHHHHHSCEECSSSCCEEEEE--EETTEEEETTTCCEE
T ss_pred HHHHHHHHhccCCcCCCCCCceeEe--cCceeEECCCCCCEE
Confidence 34444 3456788999999754433 346999999996653
No 70
>3qqc_A DNA-directed RNA polymerase subunit B, DNA-direct polymerase subunit A', DNA-directed...; transcription, fusion protein, chimera protein, multiprotein; 3.30A {Pyrococcus furiosus}
Probab=33.46 E-value=27 Score=29.50 Aligned_cols=55 Identities=15% Similarity=0.326 Sum_probs=35.5
Q ss_pred CccCCCCCCCCeeecccceeeeccccc---------------ccc-----------cCCCccceeeecccCCCCHHHHHH
Q psy5674 32 YCVDCDAKGPRWASWNIGIFLCIRCAG---------------IHR-----------NLGVHISRVKSVNLDTWTPEQVVS 85 (145)
Q Consensus 32 ~CaDCg~~~p~w~s~~~GvflC~~Cs~---------------iHR-----------~lg~~is~Vksl~ld~w~~~~i~~ 85 (145)
+|..||.-. ++......+.|..|.. +.+ .+.....+|++|...-++++||..
T Consensus 7 VC~~CG~~~--~~~~~~~~~~C~~C~~~~~i~~v~iPYa~KlL~qEL~smnI~~rl~~~d~~~~i~~i~F~~~s~eeI~~ 84 (436)
T 3qqc_A 7 VCENCGHIA--LEDKRRRRVYCPVCGEEERISKVEMSYAFKLLLDELKAMVIRPKLNLSEGGKVIGSIEFGILSPQEIRK 84 (436)
T ss_dssp EETTTCCBC--EEETTTTEEECTTTCCSSSEEEEEECHHHHHHHHHHHHTTBCCEEEEEC--CEEEEEECCBCCHHHHHH
T ss_pred EeCCCCcee--eeccccCccCCCCCCCCCeEEEEEcChHHHHHHHHHHhCCeeceeecccccceeeeeeeccCCHHHHHH
Confidence 688888633 2233445567877765 111 112345889999999999999998
Q ss_pred HHh
Q psy5674 86 LQQ 88 (145)
Q Consensus 86 l~~ 88 (145)
|..
T Consensus 85 ~Sv 87 (436)
T 3qqc_A 85 MSA 87 (436)
T ss_dssp TEE
T ss_pred hCC
Confidence 864
No 71
>3cit_A Sensor histidine kinase; MEGA: 3.30.450.40, structural genomics, sensor histidine KIN pseudomonas syringae, PSI-2; HET: MSE; 1.90A {Pseudomonas syringae PV}
Probab=32.36 E-value=50 Score=24.07 Aligned_cols=65 Identities=22% Similarity=0.273 Sum_probs=43.1
Q ss_pred cCCCCCCCCeeecccceeeeccccccc----ccCCCccceeeecccCCCCHHHHHHHHhhccHHHHHHHH
Q psy5674 34 VDCDAKGPRWASWNIGIFLCIRCAGIH----RNLGVHISRVKSVNLDTWTPEQVVSLQQMGNSRARAVYE 99 (145)
Q Consensus 34 aDCg~~~p~w~s~~~GvflC~~Cs~iH----R~lg~~is~Vksl~ld~w~~~~i~~l~~~GN~~~n~~~e 99 (145)
+|.+..+|+|.-.+-...-|+-|.-+| +.+|+ +--+.+++...|++++++.+..+....+-.+=.
T Consensus 79 ~~~~~~gpr~~~~tg~~t~svl~vPL~~~~g~~~Gv-lql~N~~~~~~f~~eD~e~l~lLA~~~a~aien 147 (160)
T 3cit_A 79 ADPLAIGPQWLERPGTHLPCVLLLPLRGADEGSFGT-LVLANSVAISAPDGEDIESLQLLATLLAAHLEN 147 (160)
T ss_dssp CCTTCCSCEEEECTTSSSCEEEEEEEECSSSSEEEE-EEEEESSCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccCcccceeEEEeeecCCCcEEEE-EEEeccCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 566666688987665556666676665 22443 123466677789999999999887666654433
No 72
>2ds5_A CLPX, ATP-dependent CLP protease ATP-binding subunit CLPX; treble cleft zinc finger, metal binding protein, protein binding; HET: PG4; 1.50A {Escherichia coli} SCOP: g.39.1.11 PDB: 2ds6_A 2ds8_A 2ds7_A
Probab=31.46 E-value=31 Score=20.45 Aligned_cols=31 Identities=19% Similarity=0.483 Sum_probs=21.0
Q ss_pred CCCCccCCCCCCC--Ceeecccceeeecccccc
Q psy5674 29 DNKYCVDCDAKGP--RWASWNIGIFLCIRCAGI 59 (145)
Q Consensus 29 ~N~~CaDCg~~~p--~w~s~~~GvflC~~Cs~i 59 (145)
....|.=||.... .-....-|+++|..|..+
T Consensus 10 ~~~~CSFCGk~~~ev~~LIaGpgv~IC~eCi~~ 42 (51)
T 2ds5_A 10 KLLYCSFCGKSQHEVRKLIAGPSVYICDECVDL 42 (51)
T ss_dssp CCCBCTTTCCBTTTSSCEEECSSCEEEHHHHHH
T ss_pred CCcEecCCCCCHHHhcccCCCCCCEehHHHHHH
Confidence 3468999998642 223333589999999653
No 73
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=29.40 E-value=30 Score=20.29 Aligned_cols=30 Identities=23% Similarity=0.403 Sum_probs=21.1
Q ss_pred CCCCccCCCCCCCCeeecccceeeeccccccc
Q psy5674 29 DNKYCVDCDAKGPRWASWNIGIFLCIRCAGIH 60 (145)
Q Consensus 29 ~N~~CaDCg~~~p~w~s~~~GvflC~~Cs~iH 60 (145)
-.+.|..||+.-. .+ ....-+.|..|.-.|
T Consensus 18 ~~k~CP~CG~~~f-m~-~~~~R~~C~kCG~t~ 47 (50)
T 3j20_Y 18 KNKFCPRCGPGVF-MA-DHGDRWACGKCGYTE 47 (50)
T ss_dssp SSEECSSSCSSCE-EE-ECSSEEECSSSCCEE
T ss_pred ecccCCCCCCceE-Ee-cCCCeEECCCCCCEE
Confidence 4678999998532 22 346788999997654
No 74
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.34 E-value=64 Score=23.49 Aligned_cols=43 Identities=14% Similarity=0.288 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCccCCCCCCCCeee--cc-cceeeeccccc
Q psy5674 10 QKQIQDKCQNLLMQMLKDDDNKYCVDCDAKGPRWAS--WN-IGIFLCIRCAG 58 (145)
Q Consensus 10 ~k~~~e~~~~~l~~l~~~p~N~~CaDCg~~~p~w~s--~~-~GvflC~~Cs~ 58 (145)
.+++|+..+..|..- -.|..|+++++.-.- -+ .-.+.|..|..
T Consensus 89 ~~~i~~~L~~yI~~Y------VlC~~C~sPdT~L~~~~~~r~~~l~C~ACGa 134 (157)
T 2e9h_A 89 ANKLQDMLDGFIKKF------VLCPECENPETDLHVNPKKQTIGNSCKACGY 134 (157)
T ss_dssp HHHHHHHHHHHHHHT------TSCTTTCCSCCEEEEETTTTEEEEECSSSCC
T ss_pred HHHHHHHHHHHHHHe------EECCCCCCCccEEEEecCCCEEEEEccCCCC
Confidence 345666666666553 359999999998774 22 34446888843
No 75
>3iz5_i 60S ribosomal protein L34 (L34E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_i
Probab=28.18 E-value=24 Score=24.70 Aligned_cols=14 Identities=14% Similarity=-0.040 Sum_probs=10.0
Q ss_pred ecccceeeeccccc
Q psy5674 45 SWNIGIFLCIRCAG 58 (145)
Q Consensus 45 s~~~GvflC~~Cs~ 58 (145)
+=.||-.+|..|..
T Consensus 75 sRaYGG~lC~~CVr 88 (119)
T 3iz5_i 75 NRPYGGVLSGPAVR 88 (119)
T ss_dssp BCCSCCCCHHHHHH
T ss_pred ccCCCccchHHHHH
Confidence 44588888888854
No 76
>3u5e_g 60S ribosomal protein L34-A, 60S ribosomal protein L33-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_g 4b6a_g 3izc_i 3izs_i
Probab=27.84 E-value=24 Score=24.81 Aligned_cols=29 Identities=24% Similarity=0.369 Sum_probs=19.4
Q ss_pred CCCccCCCCCCCC-----------------eeecccceeeeccccc
Q psy5674 30 NKYCVDCDAKGPR-----------------WASWNIGIFLCIRCAG 58 (145)
Q Consensus 30 N~~CaDCg~~~p~-----------------w~s~~~GvflC~~Cs~ 58 (145)
--.|+|||.+-.. -++=.||-.+|..|..
T Consensus 41 ~pkCg~Cg~~L~GI~~~RP~e~~rlsK~~KtvsRaYGG~lC~~CVr 86 (121)
T 3u5e_g 41 RPKCGDCGSALQGISTLRPRQYATVSKTHKTVSRAYGGSRCANCVK 86 (121)
T ss_dssp CCBCTTTCCBCTTCCCCCGGGGGSSCGGGSCCSSTTTTTSCSHHHH
T ss_pred CCCCCCCCCccCCccCCcHHHHHhcccCCCCcccCCcccchHHHHH
Confidence 3459999986211 2344588888888854
No 77
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=26.76 E-value=81 Score=23.24 Aligned_cols=43 Identities=14% Similarity=0.315 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCccCCCCCCCCeee--cc-cceeeeccccc
Q psy5674 10 QKQIQDKCQNLLMQMLKDDDNKYCVDCDAKGPRWAS--WN-IGIFLCIRCAG 58 (145)
Q Consensus 10 ~k~~~e~~~~~l~~l~~~p~N~~CaDCg~~~p~w~s--~~-~GvflC~~Cs~ 58 (145)
.+++++..+..|..-. .|..|+.|++.-.- -+ .-.+.|..|..
T Consensus 82 ~~~i~~~L~~yI~~YV------lC~~C~sPdT~L~k~~~~r~~~l~C~ACGa 127 (170)
T 2g2k_A 82 ANKLQDMLDGFIKKFV------LCPECENPETDLHVNPKKQTIGNSCKACGY 127 (170)
T ss_dssp HHHHHHHHHHHHHHHH------SCTTTSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred HHHHHHHHHHHHHHeE------ECCCCCCCccEEEEecCCCEEEEEccccCC
Confidence 3456666666666544 49999999998776 22 33456888843
No 78
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=26.12 E-value=18 Score=29.46 Aligned_cols=33 Identities=18% Similarity=0.442 Sum_probs=0.0
Q ss_pred CCCccCCCCCCC----Ceeecccceeeeccccccccc
Q psy5674 30 NKYCVDCDAKGP----RWASWNIGIFLCIRCAGIHRN 62 (145)
Q Consensus 30 N~~CaDCg~~~p----~w~s~~~GvflC~~Cs~iHR~ 62 (145)
...|..|+.+-. ..-+-.-|-.+|..|+.-+..
T Consensus 375 ~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~ 411 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYP 411 (434)
T ss_dssp -------------------------------------
T ss_pred CCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeee
Confidence 456888887632 233556688888999875443
No 79
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.63 E-value=46 Score=20.08 Aligned_cols=18 Identities=22% Similarity=0.326 Sum_probs=13.7
Q ss_pred eecccCCCCHHHHHHHHh
Q psy5674 71 KSVNLDTWTPEQVVSLQQ 88 (145)
Q Consensus 71 ksl~ld~w~~~~i~~l~~ 88 (145)
.++..+.|+++|..+|..
T Consensus 5 p~~~~~~WT~eE~~~Fe~ 22 (63)
T 2yqk_A 5 SSGIEKCWTEDEVKRFVK 22 (63)
T ss_dssp CCCCCCSCCHHHHHHHHH
T ss_pred CCcCCCCcCHHHHHHHHH
Confidence 344558999999988864
No 80
>3d00_A Tungsten formylmethanofuran dehydrogenase subunit; FWDE/GAPDH domain-like fold, structural genomics, joint CENT structural genomics; HET: MSE; 1.90A {Syntrophus aciditrophicus}
Probab=23.75 E-value=11 Score=28.29 Aligned_cols=24 Identities=29% Similarity=0.624 Sum_probs=18.4
Q ss_pred CCCccCCCCCCCCeeecccceeeeccccc
Q psy5674 30 NKYCVDCDAKGPRWASWNIGIFLCIRCAG 58 (145)
Q Consensus 30 N~~CaDCg~~~p~w~s~~~GvflC~~Cs~ 58 (145)
...|.-||..-+.- |-.+|..|++
T Consensus 163 ~~~C~~CGE~~~~~-----g~~~C~~C~~ 186 (191)
T 3d00_A 163 IVLCPQCREAYPAQ-----DGELCLSCQG 186 (191)
T ss_dssp EEECTTTCCEEEGG-----GCSSCHHHHT
T ss_pred CEECCcCCCChhhC-----CCcCCccccC
Confidence 44699999865543 8899999975
No 81
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=23.60 E-value=47 Score=20.56 Aligned_cols=15 Identities=7% Similarity=0.603 Sum_probs=12.5
Q ss_pred ccCCCCHHHHHHHHh
Q psy5674 74 NLDTWTPEQVVSLQQ 88 (145)
Q Consensus 74 ~ld~w~~~~i~~l~~ 88 (145)
.++.||++|..+|..
T Consensus 7 ~~~~WT~eE~~~Fe~ 21 (70)
T 2crg_A 7 GMEEWSASEACLFEE 21 (70)
T ss_dssp SSCCCCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHH
Confidence 468999999988775
No 82
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=21.92 E-value=59 Score=19.34 Aligned_cols=30 Identities=17% Similarity=0.438 Sum_probs=21.5
Q ss_pred CCCCccCCCCCCCCeeecccceeeeccccccc
Q psy5674 29 DNKYCVDCDAKGPRWASWNIGIFLCIRCAGIH 60 (145)
Q Consensus 29 ~N~~CaDCg~~~p~w~s~~~GvflC~~Cs~iH 60 (145)
-++.|..||+.-- + ...+..+.|..|.-..
T Consensus 17 ~~~fCPkCG~~~~-m-a~~~dr~~C~kCgyt~ 46 (55)
T 2k4x_A 17 KHRFCPRCGPGVF-L-AEHADRYSCGRCGYTE 46 (55)
T ss_dssp SSCCCTTTTTTCC-C-EECSSEEECTTTCCCE
T ss_pred ccccCcCCCCcee-E-eccCCEEECCCCCCEE
Confidence 3788999998432 2 2457899999996654
No 83
>4a18_L RPL34; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_L 4a1b_L 4a1d_L 4adx_4
Probab=20.61 E-value=41 Score=23.65 Aligned_cols=15 Identities=33% Similarity=0.439 Sum_probs=11.1
Q ss_pred eecccceeeeccccc
Q psy5674 44 ASWNIGIFLCIRCAG 58 (145)
Q Consensus 44 ~s~~~GvflC~~Cs~ 58 (145)
++=.||-.+|..|..
T Consensus 74 vsRaYGG~lC~~CVr 88 (123)
T 4a18_L 74 VSRVYGGELCHTCVR 88 (123)
T ss_dssp CSSTTSSSCCHHHHH
T ss_pred cccCCCccchHHHHH
Confidence 345699999998854
No 84
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=20.49 E-value=47 Score=21.72 Aligned_cols=30 Identities=23% Similarity=0.625 Sum_probs=23.3
Q ss_pred CCCCCccCCCCCCCCeeecccceeeecccccc
Q psy5674 28 DDNKYCVDCDAKGPRWASWNIGIFLCIRCAGI 59 (145)
Q Consensus 28 p~N~~CaDCg~~~p~w~s~~~GvflC~~Cs~i 59 (145)
.....|.-||.....- ...||.-|..|.-.
T Consensus 33 ~~ky~CpfCGk~~vkR--~a~GIW~C~kCg~~ 62 (83)
T 3j21_i 33 RQKHTCPVCGRKAVKR--ISTGIWQCQKCGAT 62 (83)
T ss_dssp HSCBCCSSSCSSCEEE--EETTEEEETTTCCE
T ss_pred hcccCCCCCCCceeEe--cCcCeEEcCCCCCE
Confidence 4567899999986654 45799999999654
No 85
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=20.48 E-value=39 Score=25.56 Aligned_cols=28 Identities=18% Similarity=0.357 Sum_probs=21.2
Q ss_pred CCCCccCCCCCCCCeeecccceeeecccc
Q psy5674 29 DNKYCVDCDAKGPRWASWNIGIFLCIRCA 57 (145)
Q Consensus 29 ~N~~CaDCg~~~p~w~s~~~GvflC~~Cs 57 (145)
.+..|..||..+--|+. +-|.+.|..|.
T Consensus 13 ~~~~CP~Cg~~d~~~~~-~dg~~~C~~Cg 40 (255)
T 1nui_A 13 YHIPCDNCGSSDGNSLF-SDGHTFCYVCE 40 (255)
T ss_dssp EEECCSSSCCSSCEEEE-TTSCEEETTTC
T ss_pred cCCcCCCCCCCCCceEe-CCCCeecccCC
Confidence 37789999997654544 45789999995
Done!