RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5674
(145 letters)
>gnl|CDD|216485 pfam01412, ArfGap, Putative GTPase activating protein for Arf.
Putative zinc fingers with GTPase activating proteins
(GAPs) towards the small GTPase, Arf. The GAP of ARD1
stimulates GTPase hydrolysis for ARD1 but not ARFs.
Length = 117
Score = 167 bits (424), Expect = 1e-54
Identities = 57/117 (48%), Positives = 78/117 (66%), Gaps = 2/117 (1%)
Query: 18 QNLLMQMLKDDDNKYCVDCDAKGPRWASWNIGIFLCIRCAGIHRNLGVHISRVKSVNLDT 77
+ LL ++ K NK C DC A P WAS N+GIF+CIRC+G+HR+LGVHIS+V+S+ LD
Sbjct: 1 KRLLRELRKLPGNKVCADCGAPNPTWASLNLGIFICIRCSGVHRSLGVHISKVRSLTLDK 60
Query: 78 WTPEQVVSLQQMGNSRARAVYEANIPDNFRRPQTDST--LEAFIRAKYEQKKYIASE 132
WTPEQ+ ++ GN RA +EAN+P P + E+FIRAKY +K + +E
Sbjct: 61 WTPEQLEFMKAGGNKRANEFWEANLPPPKPPPSSSDREKRESFIRAKYVEKLFAEAE 117
>gnl|CDD|214518 smart00105, ArfGap, Putative GTP-ase activating proteins for the
small GTPase, ARF. Putative zinc fingers with GTPase
activating proteins (GAPs) towards the small GTPase,
Arf. The GAP of ARD1 stimulates GTPase hydrolysis for
ARD1 but not ARFs.
Length = 119
Score = 139 bits (353), Expect = 7e-44
Identities = 54/112 (48%), Positives = 78/112 (69%), Gaps = 4/112 (3%)
Query: 22 MQMLKD-DDNKYCVDCDAKGPRWASWNIGIFLCIRCAGIHRNLGVHISRVKSVNLDTWTP 80
+++L+ NK C DC A P WAS N+G+FLCI C+GIHR+LGVHIS+V+S+ LDTWT
Sbjct: 1 LKLLRSIPGNKKCFDCGAPNPTWASVNLGVFLCIECSGIHRSLGVHISKVRSLTLDTWTE 60
Query: 81 EQVVSLQQMGNSRARAVYEANIPDNFRRPQTD---STLEAFIRAKYEQKKYI 129
E++ LQ+ GN A +++E+N+ D +P D E+FI AKYE+K ++
Sbjct: 61 EELRLLQKGGNENANSIWESNLDDFSLKPPDDDDQQKYESFIAAKYEEKLFV 112
>gnl|CDD|227651 COG5347, COG5347, GTPase-activating protein that regulates ARFs
(ADP-ribosylation factors), involved in ARF-mediated
vesicular transport [Intracellular trafficking and
secretion].
Length = 319
Score = 144 bits (365), Expect = 3e-43
Identities = 56/114 (49%), Positives = 71/114 (62%), Gaps = 4/114 (3%)
Query: 20 LLMQMLKDDDNKYCVDCDAKGPRWASWNIGIFLCIRCAGIHRNLGVHISRVKSVNLDTWT 79
LL + D NK C DC A P WAS N+G+FLCI CAG+HR+LGVHIS+VKS+ LD WT
Sbjct: 10 LLKLLKSDSSNKKCADCGAPNPTWASVNLGVFLCIDCAGVHRSLGVHISKVKSLTLDNWT 69
Query: 80 PEQVVSLQQMGNSRARAVYEANIPDNFRRPQ----TDSTLEAFIRAKYEQKKYI 129
E++ ++ GNS A YE N+ D P S + +IR KYE KK+I
Sbjct: 70 EEELRRMEVGGNSNANRFYEKNLLDQLLLPIKAKYDSSVAKKYIRKKYELKKFI 123
>gnl|CDD|178661 PLN03114, PLN03114, ADP-ribosylation factor GTPase-activating
protein AGD10; Provisional.
Length = 395
Score = 93.4 bits (231), Expect = 2e-23
Identities = 39/71 (54%), Positives = 52/71 (73%)
Query: 29 DNKYCVDCDAKGPRWASWNIGIFLCIRCAGIHRNLGVHISRVKSVNLDTWTPEQVVSLQQ 88
DNK C DC+AK P WAS GIFLCI C+ +HR+LGVHIS V+S NLD+W+ EQ+ +
Sbjct: 21 DNKICFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSSEQLKMMIY 80
Query: 89 MGNSRARAVYE 99
GN+RA+ ++
Sbjct: 81 GGNNRAQVFFK 91
>gnl|CDD|178677 PLN03131, PLN03131, hypothetical protein; Provisional.
Length = 705
Score = 77.1 bits (189), Expect = 2e-17
Identities = 46/135 (34%), Positives = 72/135 (53%), Gaps = 21/135 (15%)
Query: 1 MSSKAEKERQKQIQDKCQNLLMQMLKDDDNKYCVDCDAKGPRWASWNIGIFLCIRCAGIH 60
M S+ E+ER ++I + ++K N+ C++C++ GP++ N F+C+ C+GIH
Sbjct: 1 MGSRKEEERNEKI-------IRGLMKLPPNRRCINCNSLGPQFVCTNFWTFICMTCSGIH 53
Query: 61 RNLGVHISRVKSVNLDTWTPEQVVSLQQMGNSRARAVY-------EANIPDNFRRPQTDS 113
R RVKSV++ +T + V +LQ GN RAR +Y +PDN + D
Sbjct: 54 REF---THRVKSVSMSKFTSQDVEALQNGGNQRAREIYLKDWDQQRQRLPDN---SKVDK 107
Query: 114 TLEAFIRAKYEQKKY 128
E FI+ Y KKY
Sbjct: 108 IRE-FIKDIYVDKKY 121
>gnl|CDD|178666 PLN03119, PLN03119, putative ADP-ribosylation factor
GTPase-activating protein AGD14; Provisional.
Length = 648
Score = 76.8 bits (188), Expect = 3e-17
Identities = 46/131 (35%), Positives = 71/131 (54%), Gaps = 13/131 (9%)
Query: 1 MSSKAEKERQKQIQDKCQNLLMQMLKDDDNKYCVDCDAKGPRWASWNIGIFLCIRCAGIH 60
M SK E+ER ++I + ++K N+ C++C++ GP++ F+C+ C+GIH
Sbjct: 1 MGSKREEERNEKI-------IRGLMKLPPNRRCINCNSLGPQYVCTTFWTFVCMACSGIH 53
Query: 61 RNLGVHISRVKSVNLDTWTPEQVVSLQQMGNSRARAVYEANIPDNFRRPQTDSTLE---A 117
R RVKSV++ +T ++V LQ GN RAR +Y N +R +S E
Sbjct: 54 REF---THRVKSVSMSKFTSKEVEVLQNGGNQRAREIYLKNWDHQRQRLPENSNAERVRE 110
Query: 118 FIRAKYEQKKY 128
FI+ Y QKKY
Sbjct: 111 FIKNVYVQKKY 121
>gnl|CDD|119177 pfam10657, RC-P840_PscD, Photosystem P840 reaction centre protein
PscD. The photosynthetic reaction centres (RCs) of
aerotolerant organisms contain a heterodimeric core,
built up of two strongly homologous polypeptides each of
which contributes five transmembrane peptide helices to
hold a pseudo-symmetric double set of redox components.
Two molecules of PscD are housed within a subunit. PscD
may be involved in stabilising the PscB component since
it is found to co-precipitate with FMO
(Fenna-Mathews-Olson BChl a-protein) and PscB. It may
also be involved in the interaction with ferredoxin.
Length = 144
Score = 30.6 bits (69), Expect = 0.15
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 21 LMQMLKDDDNKYCVDCDAKGPRWASWNIGIFLCIRCAGIHRNLGVHISRV 70
L Q + D++N+Y +D D +G +W +I +F + R L V I R
Sbjct: 90 LKQKVLDNENRYVIDFDKRGVKWTMRDIPVFY----DSLKRQLCVEIDRR 135
>gnl|CDD|214407 MTH00032, ND5, NADH dehydrogenase subunit 5; Provisional.
Length = 669
Score = 30.3 bits (68), Expect = 0.40
Identities = 15/45 (33%), Positives = 18/45 (40%), Gaps = 11/45 (24%)
Query: 38 AKGPRWASWN-IGIFLCIRCAGIHRNLGVHISRVKSVNLDTWTPE 81
A A + IGI L I C G LG+H TW P+
Sbjct: 216 AYESPLAPFAIIGILLLIGCIGKSAQLGLH----------TWLPD 250
>gnl|CDD|205808 pfam13631, Cytochrom_B_N_2, Cytochrome b(N-terminal)/b6/petB.
Length = 168
Score = 29.1 bits (66), Expect = 0.55
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 39 KGPRWASWNIGIFL 52
+ PR +W IG+ L
Sbjct: 21 RKPRELNWLIGVIL 34
>gnl|CDD|224763 COG1850, RbcL, Ribulose 1,5-bisphosphate carboxylase, large subunit
[Carbohydrate transport and metabolism].
Length = 429
Score = 28.5 bits (64), Expect = 1.4
Identities = 8/49 (16%), Positives = 14/49 (28%), Gaps = 6/49 (12%)
Query: 75 LDTWTPEQVVSLQQMGNSRARAVYEANIPDNFRRPQTDSTLEAFIRAKY 123
TWT + +A+ +P D A ++ Y
Sbjct: 49 TGTWTTVPTDKPELADRLKAKVYDVEEVPG------EDGQKRAIVKIAY 91
>gnl|CDD|184445 PRK13995, PRK13995, potassium-transporting ATPase subunit C;
Provisional.
Length = 203
Score = 27.9 bits (62), Expect = 1.9
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 68 SRVKSVNLDTWTPEQVVSLQQMGNSRARAVYEANIPDNFRRPQTDSTLEAFIRAKYEQKK 127
RV +VN +T+T E + G S Y P+ R Q D ++ F++ KK
Sbjct: 67 GRVSAVNYNTYTKEDKGNGNYGGVSSGSQNYAPTNPELHDRVQKD--IDKFLKTNPTVKK 124
>gnl|CDD|166019 PLN02378, PLN02378, glutathione S-transferase DHAR1.
Length = 213
Score = 26.2 bits (57), Expect = 6.2
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Query: 69 RVKSVNLDTWTPEQVVSLQQMGNSRARAVYEANIPDNFRRPQTDSTLEAFIRAKYEQKKY 128
RV +V+L + P+ +G+ ++ +V E+ P +T +L++F + K E+K Y
Sbjct: 146 RVSAVDL-SLAPKLYHLQVALGHFKSWSVPES-FPHVHNYMKTLFSLDSFEKTKTEEK-Y 202
Query: 129 IASEWVPPVLP 139
+ S W P V P
Sbjct: 203 VISGWAPKVNP 213
>gnl|CDD|224466 COG1549, COG1549, Queuine tRNA-ribosyltransferases, contain PUA
domain [Translation, ribosomal structure and
biogenesis].
Length = 519
Score = 26.6 bits (59), Expect = 6.3
Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 7/49 (14%)
Query: 92 SRARAVYEANIPDNFRRPQ-TDSTLEAFIR---AKYEQKKYIASEWVPP 136
R YE IP FRR + +T E+ R ++ ++ + + PP
Sbjct: 192 DREYGYYEEKIPP-FRRSKIIFNTEESLYRPEVIRW--RERVLERYEPP 237
>gnl|CDD|180397 PRK06096, PRK06096, molybdenum transport protein ModD; Provisional.
Length = 284
Score = 25.8 bits (57), Expect = 8.1
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 75 LDTWTPEQVVSLQQMGNSRA 94
LD ++P+Q + Q+ S A
Sbjct: 215 LDKFSPQQATEIAQIAPSLA 234
>gnl|CDD|235634 PRK05877, PRK05877, aminodeoxychorismate synthase component I;
Provisional.
Length = 405
Score = 26.2 bits (58), Expect = 8.1
Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 4/45 (8%)
Query: 93 RARAVYEANIPDNFRRPQTDSTLEAFI----RAKYEQKKYIASEW 133
A VY+A + F T S L+ F R + Y+A +W
Sbjct: 156 AAGEVYQACVCTQFTGTVTGSPLDFFADGVARTAPARAAYLAGDW 200
>gnl|CDD|224657 COG1743, COG1743, Adenine-specific DNA methylase containing a
Zn-ribbon [DNA replication, recombination, and repair].
Length = 875
Score = 26.3 bits (58), Expect = 8.8
Identities = 19/87 (21%), Positives = 30/87 (34%), Gaps = 16/87 (18%)
Query: 53 CIRCAGIHRNLGVHISRVKSVNLDTWTPEQVVSLQQMGNSRARAVYEANIP--DNFRRPQ 110
C+RC G IS + + +R R + + + D P
Sbjct: 249 CLRC-------GRVISYADVKRGL-----RRYHEGEEEFARPRLLAKVKVGRGDLIFEPA 296
Query: 111 TDSTLEAFIRAKYEQKKYIAS--EWVP 135
TD LE F A+ E ++ + VP
Sbjct: 297 TDEDLERFELAREELREEWEEADDDVP 323
>gnl|CDD|220920 pfam10977, DUF2797, Protein of unknown function (DUF2797). This
family of proteins has no known function.
Length = 233
Score = 25.7 bits (57), Expect = 9.4
Identities = 7/30 (23%), Positives = 10/30 (33%)
Query: 32 YCVDCDAKGPRWASWNIGIFLCIRCAGIHR 61
YC C +K + + C G R
Sbjct: 29 YCYPCFSKLAQCDLCIMKPETCHYHLGTCR 58
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.133 0.415
Gapped
Lambda K H
0.267 0.0714 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,118,254
Number of extensions: 597935
Number of successful extensions: 548
Number of sequences better than 10.0: 1
Number of HSP's gapped: 543
Number of HSP's successfully gapped: 22
Length of query: 145
Length of database: 10,937,602
Length adjustment: 88
Effective length of query: 57
Effective length of database: 7,034,450
Effective search space: 400963650
Effective search space used: 400963650
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.6 bits)