RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5674
(145 letters)
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc
finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 141
Score = 203 bits (518), Expect = 6e-69
Identities = 82/139 (58%), Positives = 108/139 (77%)
Query: 3 SKAEKERQKQIQDKCQNLLMQMLKDDDNKYCVDCDAKGPRWASWNIGIFLCIRCAGIHRN 62
S + +++ ++ Q +L ++L+++DNKYC DC+AKGPRWASWNIG+F+CIRCAGIHRN
Sbjct: 2 SSGSSGKAQKLNEQHQLILSKLLREEDNKYCADCEAKGPRWASWNIGVFICIRCAGIHRN 61
Query: 63 LGVHISRVKSVNLDTWTPEQVVSLQQMGNSRARAVYEANIPDNFRRPQTDSTLEAFIRAK 122
LGVHISRVKSVNLD WT EQ+ +Q MGN++AR +YEAN+P+NFRRPQTD +E FIR K
Sbjct: 62 LGVHISRVKSVNLDQWTAEQIQCMQDMGNTKARLLYEANLPENFRRPQTDQAVEFFIRDK 121
Query: 123 YEQKKYIASEWVPPVLPKN 141
YE+KKY + P +
Sbjct: 122 YEKKKYYDKNAIAISGPSS 140
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural
genomics, structural genomics consortium, SGC, protein
transport; 1.90A {Homo sapiens}
Length = 134
Score = 197 bits (503), Expect = 1e-66
Identities = 78/130 (60%), Positives = 100/130 (76%), Gaps = 5/130 (3%)
Query: 1 MSSKAEKERQKQIQDKCQNLLMQMLKDDDNKYCVDCDAKGPRWASWNIGIFLCIRCAGIH 60
M+ K+ K+ D+ Q +L +L ++DNK+C DC +KGPRWASWNIG+F+CIRCAGIH
Sbjct: 3 MTGKSVKD-----VDRYQAVLANLLLEEDNKFCADCQSKGPRWASWNIGVFICIRCAGIH 57
Query: 61 RNLGVHISRVKSVNLDTWTPEQVVSLQQMGNSRARAVYEANIPDNFRRPQTDSTLEAFIR 120
RNLGVHISRVKSVNLD WT EQ+ +Q+MGN +A +YEA +P+ FRRPQ D +E FIR
Sbjct: 58 RNLGVHISRVKSVNLDQWTQEQIQCMQEMGNGKANRLYEAYLPETFRRPQIDPAVEGFIR 117
Query: 121 AKYEQKKYIA 130
KYE+KKY+
Sbjct: 118 DKYEKKKYMD 127
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing
protein 1; arfgap domain, zinc-binding module, GTPase
activ metal-binding, nitration; 2.30A {Homo sapiens}
Length = 368
Score = 188 bits (478), Expect = 5e-60
Identities = 47/139 (33%), Positives = 76/139 (54%), Gaps = 4/139 (2%)
Query: 2 SSKAEKERQKQIQDKCQNLLMQMLKDDDNKYCVDCDAKGPRWASWNIGIFLCIRCAGIHR 61
+ + + + +++ Q+ D N C DC P WAS N+G+ LCI+C+GIHR
Sbjct: 17 TLGSGGMARGREPGGVGHVVAQVQSVDGNAQCCDCREPAPEWASINLGVTLCIQCSGIHR 76
Query: 62 NLGVHISRVKSVNLDTWTPEQVVSLQQMGNSRARAVYEANIPDN-FRRPQTDSTL---EA 117
+LGVH S+V+S+ LD+W PE V + ++GN +YEA + ++P + EA
Sbjct: 77 SLGVHFSKVRSLTLDSWEPELVKLMCELGNVIINQIYEARVEAMAVKKPGPSCSRQEKEA 136
Query: 118 FIRAKYEQKKYIASEWVPP 136
+I AKY +KK++
Sbjct: 137 WIHAKYVEKKFLTKLPEIR 155
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium,
SGC, metal binding protein; 2.06A {Homo sapiens}
Length = 301
Score = 179 bits (455), Expect = 3e-57
Identities = 40/132 (30%), Positives = 64/132 (48%), Gaps = 4/132 (3%)
Query: 9 RQKQIQDKCQNLLMQMLKDDDNKYCVDCDAKGPRWASWNIGIFLCIRCAGIHRNLGVHIS 68
+ D + L+ ++ N C DC A P W S N+G+ CI+C+G+HR LGV S
Sbjct: 21 HDGEPHDLTKLLIAEVKSRPGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFS 80
Query: 69 RVKSVNLDTWTPEQVVSLQQMGNSRARAVYEANIPDNFRRPQTD----STLEAFIRAKYE 124
R++S+ LD P +++ MGN+ V EA +P + + T +I AKY
Sbjct: 81 RMQSLTLDLLGPSELLLALNMGNTSFNEVMEAQLPSHGGPKPSAESDMGTRRDYIMAKYV 140
Query: 125 QKKYIASEWVPP 136
+ ++ P
Sbjct: 141 EHRFARRCTPEP 152
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein,
REV-interacting protein, human immunodeficiency virus,
AIDS, structural genomics; 1.48A {Homo sapiens} PDB:
2d9l_A
Length = 140
Score = 173 bits (441), Expect = 3e-57
Identities = 34/132 (25%), Positives = 66/132 (50%), Gaps = 4/132 (3%)
Query: 10 QKQIQDKCQNLLMQMLKDDDNKYCVDCDAKGPRWASWNIGIFLCIRCAGIHRNLGVHISR 69
+++ ++K +L M N+ C DCD +GP + + +G F+C C+G R L R
Sbjct: 5 KRKQEEKHLKMLRDMTGLPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNPP-HR 63
Query: 70 VKSVNLDTWTPEQVVSLQQMGNSRARAVYEANIPDNFRRPQTDST---LEAFIRAKYEQK 126
VKS+++ T+T +++ LQ+ GN + ++ D ++ F++ KYE+K
Sbjct: 64 VKSISMTTFTQQEIEFLQKHGNEVCKQIWLGLFDDRSSAIPDFRDPQKVKEFLQEKYEKK 123
Query: 127 KYIASEWVPPVL 138
++ V+
Sbjct: 124 RWYVPPEQAKVV 135
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats,
metal binding protein; 2.10A {Mus musculus} SCOP:
d.211.1.1 g.45.1.1
Length = 278
Score = 178 bits (452), Expect = 5e-57
Identities = 36/126 (28%), Positives = 62/126 (49%), Gaps = 4/126 (3%)
Query: 15 DKCQNLLMQMLKDDDNKYCVDCDAKGPRWASWNIGIFLCIRCAGIHRNLGVHISRVKSVN 74
+ + ++ ++ + N C DC A P W S N+GI CI C+GIHR LGVH SR++S+
Sbjct: 2 ELTKEIISEVQRMTGNDVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLT 61
Query: 75 LDTWTPEQVVSLQQMGNSRARAVYEANIPDNFRRPQT----DSTLEAFIRAKYEQKKYIA 130
LD +++ + +GN+ + E +P + +I AKY +++Y
Sbjct: 62 LDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYAR 121
Query: 131 SEWVPP 136
+
Sbjct: 122 KKHADT 127
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein,
cysteine-rich motif, GTPase activation; 2.00A
{Cryptosporidium parvum iowa II}
Length = 138
Score = 172 bits (438), Expect = 8e-57
Identities = 40/126 (31%), Positives = 71/126 (56%), Gaps = 2/126 (1%)
Query: 2 SSKAEKERQKQIQDKCQNLLMQML-KDDDNKYCVDCDAKGPRWASWNIGIFLCIRCAGIH 60
A+ + + + DK ++ Q++ +N+ C DC+++ P W S + +F+C+ C+ H
Sbjct: 7 LINADVDEKGFVSDKLRDNFFQIVRNRPENRTCFDCESRNPTWLSLSFAVFICLNCSSDH 66
Query: 61 RNLGVHISRVKSVNLDTWTPEQVVSLQQMGNSRARAVYEANIPDNFRRPQTDSTLEAFIR 120
R +GVHIS V+S +LD +TP Q+V + GN RAR ++ + NF P+T +
Sbjct: 67 RKMGVHISFVRSSDLDKFTPIQLVRMDIGGNGRARNYFKQVLGVNF-SPKTKEYASSICG 125
Query: 121 AKYEQK 126
+Y+Q
Sbjct: 126 RQYKQI 131
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural
genomics consortium, GTPase activation, SGC, binding,
nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens}
PDB: 3feh_A* 3fm8_C 3mdb_C*
Length = 386
Score = 179 bits (454), Expect = 3e-56
Identities = 49/138 (35%), Positives = 77/138 (55%), Gaps = 4/138 (2%)
Query: 2 SSKAEKERQKQIQDKCQNLLMQMLKDDDNKYCVDCDAKGPRWASWNIGIFLCIRCAGIHR 61
+ +E + + ++++L+ N C DC A P WAS+ +G+F+C+ C+GIHR
Sbjct: 6 HHSSGRENLYFQGKERRRAVLELLQRPGNARCADCGAPDPDWASYTLGVFICLSCSGIHR 65
Query: 62 NLGVHISRVKSVNLDTWTPEQVVSLQQMGNSRARAVYEANIPDNFRRPQTDST---LEAF 118
N+ +S+VKSV LD W QV + GN ARA +E+ +P + RP E +
Sbjct: 66 NIP-QVSKVKSVRLDAWEEAQVEFMASHGNDAARARFESKVPSFYYRPTPSDCQLLREQW 124
Query: 119 IRAKYEQKKYIASEWVPP 136
IRAKYE++++I E P
Sbjct: 125 IRAKYERQEFIYPEKQEP 142
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural
genomics consorti ER-golgi transport, golgi apparatus,
GTPase activation; 2.40A {Homo sapiens}
Length = 147
Score = 170 bits (432), Expect = 9e-56
Identities = 39/138 (28%), Positives = 64/138 (46%), Gaps = 4/138 (2%)
Query: 2 SSKAEKERQKQIQDKCQNLLMQMLKDDDNKYCVDCDAKGPRWASWNIGIFLCIRCAGIHR 61
S R + + +L ++ D+N C +C A P+W S GI++C+ C+G HR
Sbjct: 10 HSSGLVPRGSMASPRTRKVLKEVRVQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHR 69
Query: 62 NLGVHISRVKSVNLDTWTPEQVVSLQQMGNSRARAVYEANI---PDNFRRPQTDSTLEAF 118
LGVH+S V+SV +D W ++ ++ GN++ R E+ P + + +S A
Sbjct: 70 GLGVHLSFVRSVTMDKWKDIELEKMKAGGNAKFREFLESQEDYDPCWSLQEKYNSRAAAL 129
Query: 119 IRAKYEQKKYIASEWVPP 136
R K EW
Sbjct: 130 FRDKVVA-LAEGREWSLE 146
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein
trafficking, hydrolase AC; 2.40A {Plasmodium falciparum
3D7}
Length = 163
Score = 162 bits (410), Expect = 3e-52
Identities = 38/133 (28%), Positives = 60/133 (45%), Gaps = 3/133 (2%)
Query: 12 QIQDKCQNLLMQMLK-DDDNKYCVDCDAKGPRWASWNIGIFLCIRCAGIHRNLGVHISRV 70
+ + ++ K D+ N C DC P W S N GIFLCI C+G+HR+LGVHIS V
Sbjct: 3 HMNAAAVEFINRLKKEDESNNKCFDCGISNPDWVSVNHGIFLCINCSGVHRSLGVHISIV 62
Query: 71 KSVNLDTWTPEQVVSLQQMGNSRARAVYEANIPDNFRRPQT-DSTLEAFIRAKYEQKKYI 129
+S+ +D +T EQ+ + + GN + + E +F + + R
Sbjct: 63 RSIKMDIFTDEQLKYIDKGGNKKCQTYLENYGISDFIPERKYRTKAADHYRKILR-SIVH 121
Query: 130 ASEWVPPVLPKNS 142
+ P+
Sbjct: 122 NVDPPAPLPLDEG 134
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3;
arfgap domain, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 149
Score = 160 bits (407), Expect = 6e-52
Identities = 44/143 (30%), Positives = 67/143 (46%), Gaps = 5/143 (3%)
Query: 2 SSKAEKERQKQIQDKCQNLLMQMLKDDDNKYCVDCDAKGPRWASWNIGIFLCIRCAGIHR 61
S + KQ + ++ NK C DC AK P WAS G+FLCI C+G HR
Sbjct: 4 GSSGMGDPSKQ---DILTIFKRLRSVPTNKVCFDCGAKNPSWASITYGVFLCIDCSGSHR 60
Query: 62 NLGVHISRVKSVNLDT-WTPEQVVSLQQMGNSRARAVYEAN-IPDNFRRPQTDSTLEAFI 119
+LGVH+S ++S LD+ W+ Q+ +Q GN+ A + + + N + +S
Sbjct: 61 SLGVHLSFIRSTELDSNWSWFQLRCMQVGGNASASSFFHQHGCSTNDTNAKYNSRAAQLY 120
Query: 120 RAKYEQKKYIASEWVPPVLPKNS 142
R K + A+ L +S
Sbjct: 121 REKIKSLASQATRKHGTDLWLDS 143
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural
genomics, structural genomics consortium, SGC, metal
binding protein; 1.80A {Homo sapiens}
Length = 144
Score = 155 bits (392), Expect = 1e-49
Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 2/127 (1%)
Query: 2 SSKAEKERQKQIQDKCQNLLMQMLKDDDNKYCVDCDAKGPRWASWNIGIFLCIRCAGIHR 61
S + + + + Q L ++ NK C DC AK P WAS G+FLCI C+G+HR
Sbjct: 9 SGLVPRGSAEPNKTEIQTLFKRLRAVPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHR 68
Query: 62 NLGVHISRVKSVNLDT-WTPEQVVSLQQMGNSRARAVYEAN-IPDNFRRPQTDSTLEAFI 119
+LGVH+S ++S LD+ W Q+ +Q GN+ A A + + N + +S
Sbjct: 69 SLGVHLSFIRSTELDSNWNWFQLRCMQVGGNANATAFFRQHGCTANDANTKYNSRAAQMY 128
Query: 120 RAKYEQK 126
R K Q
Sbjct: 129 REKIRQL 135
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 139 bits (352), Expect = 3e-40
Identities = 40/122 (32%), Positives = 64/122 (52%), Gaps = 4/122 (3%)
Query: 13 IQDKCQNLLMQMLKDDDNKYCVDCDAKGPRWASWNIGIFLCIRCAGIHRNLGVHISRVKS 72
D + L+ ++ N C DC A P W S N+G+ CI+C+G+HR LGV SR++S
Sbjct: 6 PHDLTKLLIAEVKSRPGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQS 65
Query: 73 VNLDTWTPEQVVSLQQMGNSRARAVYEANIPDNFRR-PQTDSTL---EAFIRAKYEQKKY 128
+ LD P +++ MGN+ V EA +P + P +S + +I AKY + ++
Sbjct: 66 LTLDLLGPSELLLALNMGNTSFNEVMEAQLPSHGGPKPSAESDMGTRRDYIMAKYVEHRF 125
Query: 129 IA 130
Sbjct: 126 AR 127
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation
factor 1; structural genomics consortium, GTPase
activation; HET: GDP; 2.80A {Homo sapiens}
Length = 329
Score = 108 bits (270), Expect = 2e-29
Identities = 33/121 (27%), Positives = 60/121 (49%), Gaps = 2/121 (1%)
Query: 18 QNLLMQMLKDDDNKYCVDCDAKGPRWASWNIGIFLCIRCAGIHRNLGVHISRVKSVNLDT 77
+ +L ++ D+N C +C A P+W S GI++C+ C+G HR LGVH+S V+SV +D
Sbjct: 25 RKVLKEVRVQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDK 84
Query: 78 WTPEQVVSLQQMGNSRARAVYEA--NIPDNFRRPQTDSTLEAFIRAKYEQKKYIASEWVP 135
W ++ ++ GN++ R E+ + + + ++ A + EW
Sbjct: 85 WKDIELEKMKAGGNAKFREFLESQEDYDPCWSLQEKYNSRAAALFRDKVVALAEGREWSL 144
Query: 136 P 136
Sbjct: 145 E 145
>1u5k_A Hypothetical protein; OBD-fold, Zn-binding,
recombination,replication; 2.00A {Deinococcus
radiodurans} SCOP: b.40.4.13 g.45.1.2 PDB: 1w3s_A 2v1c_C
Length = 244
Score = 37.9 bits (88), Expect = 4e-04
Identities = 20/88 (22%), Positives = 27/88 (30%), Gaps = 17/88 (19%)
Query: 33 CVDCDAKGPRWASWNIGIFLCIRCAGIHRNLGVHISRVKSVNLDTWTPEQVVSLQQMGNS 92
C C A P G LC +CA L + P + L+
Sbjct: 153 CARCGAPDPEHPDPLGGQLLCSKCAA----------------LPPYPPAVLDFLRHAVRR 196
Query: 93 RARAVYEANIPDNFRRPQTDSTLEAFIR 120
RA +E +P R LE F+
Sbjct: 197 TVRASFEQPVPSADRP-ALWRALEKFVT 223
>2rk3_A Protein DJ-1; parkinson'S disease, THIJ, PFPI, chaperone,
cytoplasm, disease mutation, nucleus, oncogene,
oxidation, parkinson disease; 1.05A {Homo sapiens} PDB:
1pdv_A 1pdw_A 3cy6_A 1pe0_A 3cza_A 3cyf_A 2rk4_A 3cz9_A*
3ezg_A 3f71_A 3sf8_A 1p5f_A 1ps4_A 1q2u_A 1soa_A 1ucf_A
2or3_A 3bwe_A 3b38_A 3b36_A ...
Length = 197
Score = 26.7 bits (60), Expect = 2.5
Identities = 4/28 (14%), Positives = 11/28 (39%), Gaps = 3/28 (10%)
Query: 103 PDNFRRPQTDSTLEAFIRAKYEQKKYIA 130
N + ++ ++ + +K IA
Sbjct: 79 AQNLSE---SAAVKEILKEQENRKGLIA 103
>4e08_A DJ-1 beta; flavodoxin-like fold, stress response, motor protein;
2.00A {Drosophila melanogaster}
Length = 190
Score = 25.9 bits (58), Expect = 4.2
Identities = 4/28 (14%), Positives = 9/28 (32%), Gaps = 3/28 (10%)
Query: 103 PDNFRRPQTDSTLEAFIRAKYEQKKYIA 130
+ S + +R++ IA
Sbjct: 80 SNAMGE---SSLVGDLLRSQESGGGLIA 104
>3ot1_A 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis
enzyme; csgid, structural genomics; HET: MSE CSX; 1.16A
{Vibrio cholerae o1 biovar el tor}
Length = 208
Score = 25.7 bits (57), Expect = 5.0
Identities = 8/29 (27%), Positives = 12/29 (41%), Gaps = 3/29 (10%)
Query: 103 PDNFRRPQTDSTLEAFIRAKYEQKKYIAS 131
F + L A I A +Q K +A+
Sbjct: 84 AQAFAD---STALLALIDAFSQQGKLVAA 109
>3l18_A Intracellular protease I; gatase1_PFPI_LIKE, hydrolase; 1.78A
{Thermococcus onnurineus} PDB: 1g2i_A
Length = 168
Score = 25.5 bits (57), Expect = 5.7
Identities = 7/29 (24%), Positives = 11/29 (37%), Gaps = 3/29 (10%)
Query: 103 PDNFRRPQTDSTLEAFIRAKYEQKKYIAS 131
P+ R + R +E K +AS
Sbjct: 75 PEIVRL---NEKAVMITRRMFEDDKPVAS 100
>3fse_A Two-domain protein containing DJ-1/THIJ/PFPI-like ferritin-like
domains; structural genomics; HET: MSE CSX; 1.90A
{Anabaena variabilis atcc 29413}
Length = 365
Score = 25.5 bits (56), Expect = 6.8
Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 3/29 (10%)
Query: 103 PDNFRRPQTDSTLEAFIRAKYEQKKYIAS 131
PD RR + F++ EQ K +A+
Sbjct: 85 PDKMRR---NPNTVRFVQEAMEQGKLVAA 110
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus,
hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Length = 677
Score = 25.7 bits (55), Expect = 7.3
Identities = 9/41 (21%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 100 ANIPDNFRRPQTDSTLEAFIRAKYEQKKYIASEWVPPVLPK 140
P N ++P S+L F R Y + + + W+ +
Sbjct: 530 CTAPINKKQPFVCSSLLQFARQ-YSRNEPLTFAWLRRYIKW 569
>2vrn_A Protease I, DR1199; cysteine sulfenic acid, DJ-1/THIJ/PFPI
superfamily, protease hydrolase, stress response; 2.15A
{Deinococcus radiodurans}
Length = 190
Score = 25.2 bits (56), Expect = 7.8
Identities = 9/29 (31%), Positives = 13/29 (44%), Gaps = 3/29 (10%)
Query: 103 PDNFRRPQTDSTLEAFIRAKYEQKKYIAS 131
PD R + F+R Y+ K IA+
Sbjct: 88 PDKLRL---EEGAMKFVRDMYDAGKPIAA 113
>2ab0_A YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase fold, unknown
function; 1.10A {Escherichia coli} SCOP: c.23.16.2
Length = 205
Score = 25.3 bits (56), Expect = 8.1
Identities = 4/28 (14%), Positives = 11/28 (39%), Gaps = 3/28 (10%)
Query: 103 PDNFRRPQTDSTLEAFIRAKYEQKKYIA 130
+ FR + L ++ + + +A
Sbjct: 79 AECFR---DSTLLVETVKQFHRSGRIVA 103
>3nph_B Phycobilisome 32.1 kDa linker polypeptide, phycoc associated, ROD
2; PFAM00427 domain, linker protein, phycobiliprotein,
photosyn; 1.85A {Synechocystis SP} PDB: 2l3w_A
Length = 148
Score = 25.2 bits (55), Expect = 8.3
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 102 IPDNFRRPQTDSTLEAFIRAKYEQ 125
IP R T+ ++A I A Y Q
Sbjct: 2 IPLELRSRSTEEEVDAVILAVYRQ 25
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.133 0.415
Gapped
Lambda K H
0.267 0.0827 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,162,264
Number of extensions: 112757
Number of successful extensions: 369
Number of sequences better than 10.0: 1
Number of HSP's gapped: 356
Number of HSP's successfully gapped: 29
Length of query: 145
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 60
Effective length of database: 4,328,508
Effective search space: 259710480
Effective search space used: 259710480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (23.6 bits)