RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5674
         (145 letters)



>d1dcqa2 g.45.1.1 (A:247-368) Pyk2-associated protein beta ARF-GAP
           domain {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 122

 Score =  135 bits (340), Expect = 1e-42
 Identities = 38/119 (31%), Positives = 66/119 (55%), Gaps = 4/119 (3%)

Query: 18  QNLLMQMLKDDDNKYCVDCDAKGPRWASWNIGIFLCIRCAGIHRNLGVHISRVKSVNLDT 77
           + ++ ++ +   N  C DC A  P W S N+GI  CI C+GIHR LGVH SR++S+ LD 
Sbjct: 3   KEIISEVQRMTGNDVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDV 62

Query: 78  WTPEQVVSLQQMGNSRARAVYEANIP-DNFRRPQTDST---LEAFIRAKYEQKKYIASE 132
               +++  + +GN+    + E  +P ++  +P   S     + +I AKY +++Y   +
Sbjct: 63  LGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYARKK 121


>d1u5ka2 g.45.1.2 (A:81-237) Recombinational repair protein RecO,
          C-terminal domain {Deinococcus radiodurans [TaxId:
          1299]}
          Length = 157

 Score = 27.8 bits (61), Expect = 0.36
 Identities = 9/26 (34%), Positives = 10/26 (38%)

Query: 32 YCVDCDAKGPRWASWNIGIFLCIRCA 57
           C  C A  P       G  LC +CA
Sbjct: 72 RCARCGAPDPEHPDPLGGQLLCSKCA 97


>d2ucza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's
          yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]}
          Length = 164

 Score = 26.3 bits (57), Expect = 1.1
 Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 2  SSKAEKERQKQIQDKCQNLLMQM---LKDDDNKYCVDCDAKGPRWASWNIGIFLC 53
          S  A+K   K++Q   ++    +    K ++N +  DC  +GP    +  G+F  
Sbjct: 1  SKTAQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNA 55


>d2a4da1 d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme, UBC
           {Human (Homo sapiens), E2 variant 1 [TaxId: 9606]}
          Length = 139

 Score = 24.5 bits (53), Expect = 3.9
 Identities = 17/110 (15%), Positives = 34/110 (30%), Gaps = 28/110 (25%)

Query: 7   KERQKQIQDKCQNLLMQMLKDDDNKYCVDCDA--KGPRWASWNIGIFLC----------- 53
           +E ++  +      +   L+DD++           GP    +   I+             
Sbjct: 12  EELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEA 71

Query: 54  ---------IRCAGIHRNLGVHISRVKSVNLDTWTPEQ-----VVSLQQM 89
                    I   G++ + GV   R  SV L  W         +  L+++
Sbjct: 72  PPFVRFVTKINMNGVNSSNGVVDPRAISV-LAKWQNSYSIKVVLQELRRL 120


>d1v9ja_ d.52.6.1 (A:) BolA-like protein {Mouse (Mus musculus)
           [TaxId: 10090]}
          Length = 113

 Score = 24.1 bits (52), Expect = 4.9
 Identities = 7/28 (25%), Positives = 12/28 (42%)

Query: 55  RCAGIHRNLGVHISRVKSVNLDTWTPEQ 82
           R   ++  L   +  + +    T TPEQ
Sbjct: 79  RHRLVNECLAEELPHIHAFEQKTLTPEQ 106


>d2c9wb1 d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 103

 Score = 23.7 bits (51), Expect = 6.0
 Identities = 12/54 (22%), Positives = 18/54 (33%), Gaps = 3/54 (5%)

Query: 87  QQMGNSRARAVYEANIPDNFRRPQTDSTLEAFIRAKYEQKK-YIASEWVPPVLP 139
           Q + + +              RPQ  +T+    RA    +   I     PP LP
Sbjct: 48  QLLDDGKTLGEC--GFTSQTARPQAPATVGLAFRADDTFEALCIEPFSSPPELP 99


>d1bnba_ g.9.1.1 (A:) Beta-defensin, BD {Cow (Bos taurus), BD12
          [TaxId: 9913]}
          Length = 38

 Score = 22.1 bits (47), Expect = 8.6
 Identities = 8/24 (33%), Positives = 11/24 (45%)

Query: 41 PRWASWNIGIFLCIRCAGIHRNLG 64
          P     N G+ + IRC    R +G
Sbjct: 2  PLSCGRNGGVCIPIRCPVPMRQIG 25


>d2doea1 a.159.2.1 (A:784-853) Transcription elongation regulator
          1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 70

 Score = 22.7 bits (49), Expect = 9.7
 Identities = 6/22 (27%), Positives = 12/22 (54%)

Query: 6  EKERQKQIQDKCQNLLMQMLKD 27
          EKE  K   +K ++   ++L +
Sbjct: 1  EKEDSKTRGEKIKSDFFELLSN 22


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.133    0.415 

Gapped
Lambda     K      H
   0.267   0.0489    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 539,178
Number of extensions: 22889
Number of successful extensions: 73
Number of sequences better than 10.0: 1
Number of HSP's gapped: 72
Number of HSP's successfully gapped: 19
Length of query: 145
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 68
Effective length of database: 1,350,386
Effective search space: 91826248
Effective search space used: 91826248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.2 bits)