BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5676
(96 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q02369|NDUB9_BOVIN NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9
OS=Bos taurus GN=NDUFB9 PE=1 SV=2
Length = 179
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 52/77 (67%)
Query: 19 THRRQVQSLYKRAVRNLEAYHSDIVDLRIEAVLLRARFDKHKDEKDLVKIRALLAEGEKE 78
TH+++V LYKRA+R+LE++ R A LLRARFD+HK+EKD+VK LL E E+E
Sbjct: 11 THQQKVLRLYKRALRHLESWCIHRDKYRYFACLLRARFDEHKNEKDMVKATQLLREAEEE 70
Query: 79 LFETTHPSPIKFPTSPG 95
+ HP P FP SPG
Sbjct: 71 FWHGQHPQPYIFPESPG 87
>sp|Q0MQE8|NDUB9_PONAB NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9
OS=Pongo abelii GN=NDUFB9 PE=2 SV=3
Length = 179
Score = 79.0 bits (193), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 52/77 (67%)
Query: 19 THRRQVQSLYKRAVRNLEAYHSDIVDLRIEAVLLRARFDKHKDEKDLVKIRALLAEGEKE 78
THR++V LYKRA+R+LE++ R A L+RARF++HK+EKD+V+ LL E E+E
Sbjct: 11 THRQKVLRLYKRALRHLESWCVQRDKYRYFACLMRARFEEHKNEKDMVRATQLLKEAEEE 70
Query: 79 LFETTHPSPIKFPTSPG 95
+ HP P FP SPG
Sbjct: 71 FWYRQHPQPYIFPDSPG 87
>sp|Q9CQJ8|NDUB9_MOUSE NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9
OS=Mus musculus GN=Ndufb9 PE=1 SV=3
Length = 179
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 53/77 (68%)
Query: 19 THRRQVQSLYKRAVRNLEAYHSDIVDLRIEAVLLRARFDKHKDEKDLVKIRALLAEGEKE 78
TH+++V LYKRA+R+LE++ R A L+RARF++HK+EKD+++ LL E E+E
Sbjct: 11 THQQKVLRLYKRALRHLESWCIHRDKYRYFACLMRARFEEHKNEKDMMRATQLLREAEEE 70
Query: 79 LFETTHPSPIKFPTSPG 95
++ HP P FP SPG
Sbjct: 71 FWQNQHPQPYIFPDSPG 87
>sp|Q9Y6M9|NDUB9_HUMAN NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9
OS=Homo sapiens GN=NDUFB9 PE=1 SV=3
Length = 179
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 51/77 (66%)
Query: 19 THRRQVQSLYKRAVRNLEAYHSDIVDLRIEAVLLRARFDKHKDEKDLVKIRALLAEGEKE 78
TH+++V LYKRA+R+LE++ R A L+RARF++HK+EKD+ K LL E E+E
Sbjct: 11 THQQKVLRLYKRALRHLESWCVQRDKYRYFACLMRARFEEHKNEKDMAKATQLLKEAEEE 70
Query: 79 LFETTHPSPIKFPTSPG 95
+ HP P FP SPG
Sbjct: 71 FWYRQHPQPYIFPDSPG 87
>sp|Q0MQE9|NDUB9_GORGO NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9
OS=Gorilla gorilla gorilla GN=NDUFB9 PE=2 SV=3
Length = 179
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 51/77 (66%)
Query: 19 THRRQVQSLYKRAVRNLEAYHSDIVDLRIEAVLLRARFDKHKDEKDLVKIRALLAEGEKE 78
TH+++V LYKRA+R+LE++ R A L+RARF++HK+EKD+ K LL E E+E
Sbjct: 11 THQQKVLRLYKRALRHLESWCVQRDKYRYFACLMRARFEEHKNEKDMAKATQLLKEAEEE 70
Query: 79 LFETTHPSPIKFPTSPG 95
+ HP P FP SPG
Sbjct: 71 FWYRQHPQPYIFPDSPG 87
>sp|Q0MQF0|NDUB9_PANTR NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9
OS=Pan troglodytes GN=NDUFB9 PE=2 SV=3
Length = 179
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 51/77 (66%)
Query: 19 THRRQVQSLYKRAVRNLEAYHSDIVDLRIEAVLLRARFDKHKDEKDLVKIRALLAEGEKE 78
TH+++V LYKRA+R+LE++ R A L+RARF++HK+EKD+ K LL E E+E
Sbjct: 11 THQQKVLRLYKRALRHLESWCVQRDKYRYFACLMRARFEEHKNEKDMAKATQLLKEAEEE 70
Query: 79 LFETTHPSPIKFPTSPG 95
+ HP P FP SPG
Sbjct: 71 FWYRQHPQPYIFPDSPG 87
>sp|Q945M1|NDUB9_ARATH NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9
OS=Arabidopsis thaliana GN=CIB22 PE=2 SV=1
Length = 117
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 12/94 (12%)
Query: 4 TLLARRAIQIPFELPTHRRQVQSLYKRAVRNL--EAYHSDIVDLRIEAVLLRARFDKHKD 61
ARRA Q + +V+ LY+RA+++ A H I +A LR +F+ ++D
Sbjct: 8 AYFARRAAQ--------KERVRILYRRALKDTLNWAVHRHI--FYRDASDLREKFNVNQD 57
Query: 62 EKDLVKIRALLAEGEKELFETTHPSPIKFPTSPG 95
+D+ +I L+A GE E + HP P P +PG
Sbjct: 58 VEDVDRIDKLIAHGEAEYNKWRHPDPYIVPWAPG 91
>sp|O14972|DSCR3_HUMAN Down syndrome critical region protein 3 OS=Homo sapiens GN=DSCR3
PE=2 SV=1
Length = 297
Score = 33.1 bits (74), Expect = 0.57, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 11/83 (13%)
Query: 12 QIPFELPTHRRQVQSLYKRAVRNLEAYHSDIVDLRIEAVLLRARFDKHKDEKDLVKIRAL 71
+IPFE P H + + LY E YH V+++ LR + KDL K
Sbjct: 90 EIPFEFPLHLKGNKVLY-------ETYHGVFVNIQYT---LRCDMKRSLLAKDLTKTCEF 139
Query: 72 LAEGEKELFETTHPSPIKFPTSP 94
+ + + T PSP+ F +P
Sbjct: 140 IVHSAPQKGKFT-PSPVDFTITP 161
>sp|Q54NR3|NDUB9_DICDI NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9
OS=Dictyostelium discoideum GN=ndufb9 PE=3 SV=1
Length = 106
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 34/69 (49%)
Query: 19 THRRQVQSLYKRAVRNLEAYHSDIVDLRIEAVLLRARFDKHKDEKDLVKIRALLAEGEKE 78
+H ++V LY++A++++ Y D + A LRA K+E + I+ ++ + E
Sbjct: 3 SHSQKVVRLYRKAIKSIRDYSEDYDMFLLNAGDLRASLKAGKNETNPFAIQQMVKQLEDF 62
Query: 79 LFETTHPSP 87
HP P
Sbjct: 63 NSYWEHPDP 71
>sp|Q5RF33|DSCR3_PONAB Down syndrome critical region protein 3 homolog OS=Pongo abelii
GN=DSCR3 PE=2 SV=1
Length = 297
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 11/83 (13%)
Query: 12 QIPFELPTHRRQVQSLYKRAVRNLEAYHSDIVDLRIEAVLLRARFDKHKDEKDLVKIRAL 71
+IPFE P H + + LY E YH V+++ LR + KDL K
Sbjct: 90 EIPFEFPLHVKGNKVLY-------ETYHGVFVNIQYT---LRCDMKRSLLAKDLTKTCEF 139
Query: 72 LAEGEKELFETTHPSPIKFPTSP 94
+ + + + PSP+ F +P
Sbjct: 140 IVHSAPQKGKFS-PSPVHFTITP 161
>sp|C8Z4Y4|RRG1_YEAS8 Required for respiratory growth protein 1, mitochondrial
OS=Saccharomyces cerevisiae (strain Lalvin EC1118 /
Prise de mousse) GN=RRG1 PE=3 SV=1
Length = 365
Score = 30.4 bits (67), Expect = 3.2, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 16 ELPTHRRQVQSLYKRAVRNL-EAYHSDIVDLRIEAVLLRARFDKHKDEKDLVKIRALLAE 74
++P+H+ V SLY+ +RN+ + HS I+ L + F KHK +K + LL E
Sbjct: 7 KIPSHKSYVLSLYRTVLRNIPKCCHSYAFQYEIKKTLSKQLF-KHKHDKSSWSVYTLLNE 65
>sp|A6ZY30|RRG1_YEAS7 Required for respiratory growth protein 1, mitochondrial
OS=Saccharomyces cerevisiae (strain YJM789) GN=RRG1
PE=3 SV=1
Length = 365
Score = 30.4 bits (67), Expect = 3.2, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 16 ELPTHRRQVQSLYKRAVRNL-EAYHSDIVDLRIEAVLLRARFDKHKDEKDLVKIRALLAE 74
++P+H+ V SLY+ +RN+ + HS I+ L + F KHK +K + LL E
Sbjct: 7 KIPSHKSYVLSLYRTVLRNIPKCCHSYAFQYEIKKTLSKQLF-KHKHDKSSWSVYTLLNE 65
>sp|B5VFW2|RRG1_YEAS6 Required for respiratory growth protein 1, mitochondrial
OS=Saccharomyces cerevisiae (strain AWRI1631) GN=RRG1
PE=3 SV=1
Length = 365
Score = 30.4 bits (67), Expect = 3.2, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 16 ELPTHRRQVQSLYKRAVRNL-EAYHSDIVDLRIEAVLLRARFDKHKDEKDLVKIRALLAE 74
++P+H+ V SLY+ +RN+ + HS I+ L + F KHK +K + LL E
Sbjct: 7 KIPSHKSYVLSLYRTVLRNIPKCCHSYAFQYEIKKTLSKQLF-KHKHDKSSWSVYTLLNE 65
>sp|C7GVS1|RRG1_YEAS2 Required for respiratory growth protein 1, mitochondrial
OS=Saccharomyces cerevisiae (strain JAY291) GN=RRG1
PE=3 SV=1
Length = 365
Score = 30.4 bits (67), Expect = 3.2, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 16 ELPTHRRQVQSLYKRAVRNL-EAYHSDIVDLRIEAVLLRARFDKHKDEKDLVKIRALLAE 74
++P+H+ V SLY+ +RN+ + HS I+ L + F KHK +K + LL E
Sbjct: 7 KIPSHKSYVLSLYRTVLRNIPKCCHSYAFQYEIKKTLSKQLF-KHKHDKSSWSVYTLLNE 65
>sp|B3LGK5|RRG1_YEAS1 Required for respiratory growth protein 1, mitochondrial
OS=Saccharomyces cerevisiae (strain RM11-1a) GN=RRG1
PE=3 SV=1
Length = 365
Score = 30.4 bits (67), Expect = 3.2, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 16 ELPTHRRQVQSLYKRAVRNL-EAYHSDIVDLRIEAVLLRARFDKHKDEKDLVKIRALLAE 74
++P+H+ V SLY+ +RN+ + HS I+ L + F KHK +K + LL E
Sbjct: 7 KIPSHKSYVLSLYRTVLRNIPKCCHSYAFQYEIKKTLSKQLF-KHKHDKSSWSVYTLLNE 65
>sp|P54676|PI3K4_DICDI Phosphatidylinositol 3-kinase VPS34-like OS=Dictyostelium
discoideum GN=pikE PE=3 SV=2
Length = 816
Score = 30.0 bits (66), Expect = 4.8, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 9/83 (10%)
Query: 19 THRRQVQSLYKRAVRNLEAYHSD-----IVDLRIEAVLLRARFDKHKDEKDLVKIRALLA 73
+H + +Q LY R + + +A + I L + +V L+A EK + K+R +LA
Sbjct: 448 SHYKTLQELYFRQLDHTDAQRVNAQNKFISRLSLLSVELKAM--NITREKKIEKLRIMLA 505
Query: 74 EGEKELFETTHPSPIKFPTSPGL 96
EGE + + + PI+ P +P +
Sbjct: 506 EGEYK--DLSDFQPIRLPVNPDI 526
>sp|Q6FT60|RRG1_CANGA Required for respiratory growth protein 1, mitochondrial
OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM
3761 / NBRC 0622 / NRRL Y-65) GN=RRG1 PE=3 SV=1
Length = 377
Score = 29.3 bits (64), Expect = 7.9, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 16 ELPTHRRQVQSLYKRAVRNLEAYHSDIVDLRIEAVLL-RARFDKHKDEKDLVKIRALLAE 74
EL HR V +LY+ ++RN+ +S V +++ V+ AR KHK++K I L E
Sbjct: 7 ELAAHRNYVLALYRHSLRNVSRINSGFVKHKMKKVITNEAR--KHKNDKSSWSIYRRLKE 64
>sp|Q1WUF9|DPO3_LACS1 DNA polymerase III PolC-type OS=Lactobacillus salivarius (strain
UCC118) GN=polC PE=3 SV=1
Length = 1444
Score = 28.9 bits (63), Expect = 8.5, Method: Composition-based stats.
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 12/75 (16%)
Query: 28 YKRAVRNLEA----YHSDIVDLRIEAVLLRARFDKHKDEKDLVK--------IRALLAEG 75
+ RA+ + EA Y++ + D + +L F+KH E D K I A EG
Sbjct: 568 HHRAIYDAEATGFIYYAMLKDAEEKQILYHDDFNKHVGENDAYKHEHPSHAIILAKTQEG 627
Query: 76 EKELFETTHPSPIKF 90
K LF+ T S +K+
Sbjct: 628 LKNLFKLTSESMVKY 642
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.138 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,620,324
Number of Sequences: 539616
Number of extensions: 1084611
Number of successful extensions: 3600
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 3586
Number of HSP's gapped (non-prelim): 28
length of query: 96
length of database: 191,569,459
effective HSP length: 66
effective length of query: 30
effective length of database: 155,954,803
effective search space: 4678644090
effective search space used: 4678644090
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)