Query psy5676
Match_columns 96
No_of_seqs 115 out of 493
Neff 6.2
Searched_HMMs 46136
Date Fri Aug 16 23:45:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5676.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5676hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3466|consensus 99.9 3.5E-26 7.5E-31 158.3 7.2 82 13-95 5-86 (157)
2 PF05347 Complex1_LYR: Complex 99.7 2.4E-16 5.1E-21 93.5 7.1 59 22-81 1-59 (59)
3 PF13232 Complex1_LYR_1: Compl 99.6 6E-16 1.3E-20 92.9 6.8 59 22-82 1-60 (61)
4 KOG3801|consensus 99.6 8.5E-16 1.8E-20 99.6 7.5 64 18-83 3-67 (94)
5 KOG4620|consensus 99.4 6.4E-13 1.4E-17 83.3 7.9 69 16-86 3-73 (80)
6 KOG3426|consensus 99.1 1.4E-10 3E-15 78.2 6.2 68 13-83 15-89 (124)
7 PF13233 Complex1_LYR_2: Compl 97.6 0.00024 5.1E-09 46.1 6.1 55 24-78 1-65 (104)
8 KOG4100|consensus 97.1 0.003 6.5E-08 43.0 6.8 58 19-80 7-65 (125)
9 PF04716 ETC_C1_NDUFA5: ETC co 93.9 0.54 1.2E-05 28.0 6.6 52 21-72 4-55 (57)
10 PF03461 TRCF: TRCF domain; I 62.4 19 0.00042 23.1 4.2 59 10-78 5-63 (101)
11 PF09164 VitD-bind_III: Vitami 44.6 72 0.0016 19.7 4.4 32 44-75 10-41 (68)
12 KOG0489|consensus 42.0 24 0.00052 26.5 2.4 37 46-82 168-206 (261)
13 KOG0810|consensus 40.8 1.6E+02 0.0034 22.9 6.8 66 15-80 116-183 (297)
14 PF04695 Pex14_N: Peroxisomal 39.1 41 0.00089 22.8 3.1 27 52-79 25-51 (136)
15 PF06676 DUF1178: Protein of u 33.4 1.1E+02 0.0024 21.5 4.5 57 21-77 76-136 (148)
16 PF04282 DUF438: Family of unk 32.2 60 0.0013 20.0 2.7 25 51-75 17-45 (71)
17 COG5319 Uncharacterized protei 31.6 1.3E+02 0.0027 21.1 4.5 67 12-78 61-131 (142)
18 PF10363 DUF2435: Protein of u 30.8 1.4E+02 0.0031 18.8 4.9 56 27-90 4-60 (92)
19 KOG4263|consensus 28.7 1.4E+02 0.003 23.2 4.6 49 22-73 55-105 (299)
20 PF07438 DUF1514: Protein of u 26.2 1.6E+02 0.0036 18.0 4.9 38 43-80 28-65 (66)
21 PHA02571 a-gt.4 hypothetical p 25.9 2.1E+02 0.0046 19.2 7.7 59 19-82 41-99 (109)
22 PRK00396 rnpA ribonuclease P; 25.3 2.2E+02 0.0048 19.2 6.0 47 49-96 67-129 (130)
23 COG2924 Uncharacterized protei 21.6 2.4E+02 0.0052 18.2 4.1 36 58-93 53-90 (90)
24 COG1753 Predicted antotoxin, c 21.4 2.2E+02 0.0048 17.8 7.2 70 14-87 2-74 (74)
25 PF12960 DUF3849: Protein of u 20.3 2.5E+02 0.0054 19.4 4.3 45 22-74 13-57 (133)
No 1
>KOG3466|consensus
Probab=99.93 E-value=3.5e-26 Score=158.26 Aligned_cols=82 Identities=45% Similarity=0.710 Sum_probs=78.6
Q ss_pred CCCCccchHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhccCCCCCCCCC
Q psy5676 13 IPFELPTHRRQVQSLYKRAVRNLEAYHSDIVDLRIEAVLLRARFDKHKDEKDLVKIRALLAEGEKELFETTHPSPIKFPT 92 (96)
Q Consensus 13 ~p~~~~~~r~~Vl~LYR~~LR~~~~~~~~r~~~r~~a~~iR~~Fe~nk~vtD~~~I~~Ll~~g~~~L~~~~hp~Py~~p~ 92 (96)
.++.+++|+++|++|||++||...+|++.|+.||+.+..||++|++|++ +|..++..||++|++||.+..||+|||||+
T Consensus 5 ~f~~~lshkqkV~rLYKRaLR~lenWy~~rn~yRy~ac~~RARFden~~-kD~~k~~~LLa~ge~E~w~~rHpqP~ifp~ 83 (157)
T KOG3466|consen 5 YFARRLSHKQKVRRLYKRALRDLENWYVHRNIYRYQACIIRARFDENDE-KDVDKAIRLLAEGERELWEWRHPQPYIFPD 83 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhhhhhh-hhHHHHHHHHHHHHHHHHhhcCCCccccCC
Confidence 4555669999999999999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred CCC
Q psy5676 93 SPG 95 (96)
Q Consensus 93 ~pg 95 (96)
|||
T Consensus 84 spG 86 (157)
T KOG3466|consen 84 SPG 86 (157)
T ss_pred CCC
Confidence 999
No 2
>PF05347 Complex1_LYR: Complex 1 protein (LYR family); InterPro: IPR008011 This family of short proteins includes proteins from the NADH-ubiquinone oxidoreductase complex I. The family includes the B14 subunit from bovine NADH-ubiquinone oxidoreductase B14 subunit Q02366 from SWISSPROT, and the B22 subunit from the human enzyme Q9Y6M9 from SWISSPROT. The family has been named LYR after a highly conserved tripeptide motif close to the N terminus of these proteins. Members of this family also found in yeast which do contain this complex. In these organisms they are believed to be be required for iron-sulphur custer biogenesis.
Probab=99.67 E-value=2.4e-16 Score=93.50 Aligned_cols=59 Identities=32% Similarity=0.494 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhh
Q psy5676 22 RQVQSLYKRAVRNLEAYHSDIVDLRIEAVLLRARFDKHKDEKDLVKIRALLAEGEKELFE 81 (96)
Q Consensus 22 ~~Vl~LYR~~LR~~~~~~~~r~~~r~~a~~iR~~Fe~nk~vtD~~~I~~Ll~~g~~~L~~ 81 (96)
++||+|||++||.+..|+++. .-......||++|++|++++||+.|+.++.+|+.+|++
T Consensus 1 q~vl~LYR~lLR~~~~~~~~~-~r~~~~~~iR~~Fr~n~~~~d~~~I~~~l~~g~~~l~~ 59 (59)
T PF05347_consen 1 QRVLSLYRQLLRAARSFPDDS-EREYIRAEIRQEFRKNRNETDPEKIEELLKKGEEELEM 59 (59)
T ss_pred ChHHHHHHHHHHHHHHcCCcc-hHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcC
Confidence 589999999999999988743 11223468999999999999999999999999999874
No 3
>PF13232 Complex1_LYR_1: Complex1_LYR-like
Probab=99.65 E-value=6e-16 Score=92.93 Aligned_cols=59 Identities=36% Similarity=0.485 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHhhcccchHHHH-HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhc
Q psy5676 22 RQVQSLYKRAVRNLEAYHSDIVDLR-IEAVLLRARFDKHKDEKDLVKIRALLAEGEKELFET 82 (96)
Q Consensus 22 ~~Vl~LYR~~LR~~~~~~~~r~~~r-~~a~~iR~~Fe~nk~vtD~~~I~~Ll~~g~~~L~~~ 82 (96)
++||+|||++||++..|++ ++++ +...+||++|++|++++||++|+.++++|+++|..+
T Consensus 1 ~~vL~LYR~lLR~~~~~~~--~~~r~~~~~~ir~~Fr~~~~~td~~~i~~~l~~~~~~L~~l 60 (61)
T PF13232_consen 1 QQVLSLYRQLLREASKFPD--YNFRSYFRRRIRDRFRRNKNVTDPEKIAKLLKEGRKELELL 60 (61)
T ss_pred ChHHHHHHHHHHHhhhcCC--cchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHc
Confidence 4899999999999999986 3333 234589999999999999999999999999999875
No 4
>KOG3801|consensus
Probab=99.64 E-value=8.5e-16 Score=99.64 Aligned_cols=64 Identities=28% Similarity=0.346 Sum_probs=58.1
Q ss_pred cchHHHHHHHHHHHHHHHhhcccchHHHHHH-HHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhcc
Q psy5676 18 PTHRRQVQSLYKRAVRNLEAYHSDIVDLRIE-AVLLRARFDKHKDEKDLVKIRALLAEGEKELFETT 83 (96)
Q Consensus 18 ~~~r~~Vl~LYR~~LR~~~~~~~~r~~~r~~-a~~iR~~Fe~nk~vtD~~~I~~Ll~~g~~~L~~~~ 83 (96)
+.++++|++|||.+||+++.+++ ++||.+ .+++|+.|++|++++||.+|+.++++|+++|+...
T Consensus 3 ~~sr~qvlsLyr~~lr~s~qfp~--YNyReY~~RrtRD~Fr~Nkn~~Dp~e~~~l~~eakk~Levik 67 (94)
T KOG3801|consen 3 MVSRRQVLSLYRNLLRESKQFPQ--YNYREYFQRRTRDTFRANKNVCDPAEIKKLYKEAKKQLEVIK 67 (94)
T ss_pred cccHHHHHHHHHHHHHHHhhCCc--ccHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999987 777755 46999999999999999999999999999998654
No 5
>KOG4620|consensus
Probab=99.45 E-value=6.4e-13 Score=83.30 Aligned_cols=69 Identities=28% Similarity=0.415 Sum_probs=58.7
Q ss_pred CccchHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhcCC--CCHHHHHHHHHHHHHHHhhccCCC
Q psy5676 16 ELPTHRRQVQSLYKRAVRNLEAYHSDIVDLRIEAVLLRARFDKHKDE--KDLVKIRALLAEGEKELFETTHPS 86 (96)
Q Consensus 16 ~~~~~r~~Vl~LYR~~LR~~~~~~~~r~~~r~~a~~iR~~Fe~nk~v--tD~~~I~~Ll~~g~~~L~~~~hp~ 86 (96)
.+.+.+++||+|||.+||+++..+. .+-+.....|++||++|+++ +|.-.|+.|+..|+++++.+.||.
T Consensus 3 rlSgLQrqVlhlYR~~lraa~~Kp~--~~~~~~m~fvh~EFrk~~~lpr~Df~~IEhLlRvG~rq~~~~s~pe 73 (80)
T KOG4620|consen 3 RLSGLQRQVLHLYRDLLRAARGKPG--AEARRWMAFVHAEFRKHAGLPRSDFLRIEHLLRVGRRQLQLLSSPE 73 (80)
T ss_pred chhHHHHHHHHHHHHHHHHhcCCCc--hHHHHHHHHHHHHHHHhcCCcHhHHHHHHHHHHHhHHHHHHhcCcc
Confidence 3447899999999999999998876 22222335799999999999 699999999999999999999995
No 6
>KOG3426|consensus
Probab=99.14 E-value=1.4e-10 Score=78.22 Aligned_cols=68 Identities=29% Similarity=0.385 Sum_probs=54.4
Q ss_pred CCCCccchHHHHHHHHHHHHHHHhhcccc-------hHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhcc
Q psy5676 13 IPFELPTHRRQVQSLYKRAVRNLEAYHSD-------IVDLRIEAVLLRARFDKHKDEKDLVKIRALLAEGEKELFETT 83 (96)
Q Consensus 13 ~p~~~~~~r~~Vl~LYR~~LR~~~~~~~~-------r~~~r~~a~~iR~~Fe~nk~vtD~~~I~~Ll~~g~~~L~~~~ 83 (96)
........|++|+.|||.+.|....+..+ -..+| .+||++|.+|.|+|||.+|+.|+-+|+.+|++..
T Consensus 15 ~S~n~~EARrrvl~~yra~~R~iP~~~~dy~L~dm~~~~~R---~~ir~qf~kn~hvTD~rViDlLV~kg~~elkeiv 89 (124)
T KOG3426|consen 15 NSANLTEARRRVLDLYRAWYRSIPTIVDDYNLQDMTVSQLR---DKIREQFRKNAHVTDPRVIDLLVIKGMEELKEIV 89 (124)
T ss_pred ccCcHHHHHHHHHHHHHHHHHhcChHHHhcCCcccCHHHHH---HHHHHHHHhcCCcCCchhhhHHHHhhHHHHHHHH
Confidence 33444456999999999999999653221 13344 4899999999999999999999999999998754
No 7
>PF13233 Complex1_LYR_2: Complex1_LYR-like
Probab=97.63 E-value=0.00024 Score=46.13 Aligned_cols=55 Identities=29% Similarity=0.353 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHhhcccchHHH------HHHHHHH----HHHHHhhcCCCCHHHHHHHHHHHHHH
Q psy5676 24 VQSLYKRAVRNLEAYHSDIVDL------RIEAVLL----RARFDKHKDEKDLVKIRALLAEGEKE 78 (96)
Q Consensus 24 Vl~LYR~~LR~~~~~~~~r~~~------r~~a~~i----R~~Fe~nk~vtD~~~I~~Ll~~g~~~ 78 (96)
|++|||.+||+...|+...... ...-..| +++|+.+++++|+..+..-+.+.+.-
T Consensus 1 V~~lYR~lLRel~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ef~~~~~~~~~~~~~~~~~~~~~y 65 (104)
T PF13233_consen 1 VLSLYRSLLRELRRYPRRSKIHQLKAPRSPGDQYVLEQARAEFRRHKSANDEEEAQEFLQEWENY 65 (104)
T ss_pred ChHHHHHHHHHHHhhcchhhhhhhhchhHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHH
Confidence 7999999999999876432110 1122467 99999999999777777666666543
No 8
>KOG4100|consensus
Probab=97.10 E-value=0.003 Score=42.95 Aligned_cols=58 Identities=26% Similarity=0.407 Sum_probs=43.4
Q ss_pred chHHHHHHHHHHHHHHHhhcccchHHHHH-HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHh
Q psy5676 19 THRRQVQSLYKRAVRNLEAYHSDIVDLRI-EAVLLRARFDKHKDEKDLVKIRALLAEGEKELF 80 (96)
Q Consensus 19 ~~r~~Vl~LYR~~LR~~~~~~~~r~~~r~-~a~~iR~~Fe~nk~vtD~~~I~~Ll~~g~~~L~ 80 (96)
.|-.+|.-|||++||.=+--+.+ .|. --..|++||++||++ +|..++-.+.+.+.-..
T Consensus 7 ~~p~rvrlLYkriLrlHr~lp~~---~R~lGD~YVkdEFrrHk~v-np~~~~~FlteW~~Ya~ 65 (125)
T KOG4100|consen 7 LHPPRVRLLYKRILRLHRGLPAE---LRALGDQYVKDEFRRHKTV-NPLEAQGFLTEWERYAV 65 (125)
T ss_pred CCcchHHHHHHHHHHHHccCChH---HHHHHHHHHHHHHHHhccC-ChHHHHHHHHHHHHHHH
Confidence 34567878999999998877651 121 123699999999999 89999988887765443
No 9
>PF04716 ETC_C1_NDUFA5: ETC complex I subunit conserved region; InterPro: IPR006806 This is a family of eukaryotic NADH-ubiquinone oxidoreductase subunits (1.6.5.3 from EC) (1.6.99.3 from EC) from complex I of the electron transport chain initially identified in Neurospora crassa as a 29.9 kDa protein. The conserved region is found at the N terminus of the member proteins [].; GO: 0016651 oxidoreductase activity, acting on NADH or NADPH, 0022904 respiratory electron transport chain, 0005743 mitochondrial inner membrane
Probab=93.89 E-value=0.54 Score=27.97 Aligned_cols=52 Identities=21% Similarity=0.378 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhcCCCCHHHHHHHH
Q psy5676 21 RRQVQSLYKRAVRNLEAYHSDIVDLRIEAVLLRARFDKHKDEKDLVKIRALL 72 (96)
Q Consensus 21 r~~Vl~LYR~~LR~~~~~~~~r~~~r~~a~~iR~~Fe~nk~vtD~~~I~~Ll 72 (96)
|.....||.+.|+....++.+..+-++--..++.++.--+...|.++|+..|
T Consensus 4 r~~L~~lY~~~L~~L~~~P~~a~YR~~tE~it~~Rl~iv~~~~d~~~iE~~i 55 (57)
T PF04716_consen 4 REALISLYNKTLKALKKIPEDAAYRQYTEAITKHRLKIVEEEEDIEKIEKKI 55 (57)
T ss_pred HHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHccccHHHHHHHh
Confidence 5678899999999999998766543333347888888888899999998765
No 10
>PF03461 TRCF: TRCF domain; InterPro: IPR005118 This domain is found in proteins necessary for strand-specific repair in DNA such as TRCF in Escherichia coli. A lesion in the template strand blocks the RNA polymerase complex (RNAP). The RNAP-DNA-RNA complex is specifically recognised by the transcription-repair-coupling factor (TRCF) which releases RNAP and the truncated transcript.; GO: 0003684 damaged DNA binding, 0004386 helicase activity, 0005524 ATP binding, 0006281 DNA repair; PDB: 2QSR_A 2EYQ_A.
Probab=62.44 E-value=19 Score=23.08 Aligned_cols=59 Identities=19% Similarity=0.146 Sum_probs=34.6
Q ss_pred hccCCCCccchHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHH
Q psy5676 10 AIQIPFELPTHRRQVQSLYKRAVRNLEAYHSDIVDLRIEAVLLRARFDKHKDEKDLVKIRALLAEGEKE 78 (96)
Q Consensus 10 a~~~p~~~~~~r~~Vl~LYR~~LR~~~~~~~~r~~~r~~a~~iR~~Fe~nk~vtD~~~I~~Ll~~g~~~ 78 (96)
..+||..+++.-.+=+.+||++-..... +.......+++++|=. =|++++.|+.-++-.
T Consensus 5 ~a~IP~~YI~d~~~Rl~~Yrrl~~~~~~-----~el~~l~~El~DRFG~-----~P~ev~~L~~~~~lk 63 (101)
T PF03461_consen 5 DAYIPEDYIPDDDERLELYRRLASAESE-----EELEDLREELIDRFGP-----LPEEVENLLELARLK 63 (101)
T ss_dssp --S--TTTS--HHHHHHHHHHHHC--SH-----HHHHHHHHHHHHHH-S-------HHHHHHHHHHHHH
T ss_pred cccCChHHcCChHHHHHHHHHHhhCCCH-----HHHHHHHHHHHHHcCC-----CcHHHHHHHHHHHHH
Confidence 3689999999999999999998776422 2333344567777743 477888888876643
No 11
>PF09164 VitD-bind_III: Vitamin D binding protein, domain III; InterPro: IPR015247 This domain is predominantly found in Vitamin D binding proteins, and adopts a multihelical structure. It is required for formation of an actin 'clamp', allowing the protein to bind to actin []. ; PDB: 1MA9_A 1KW2_A 1KXP_D 1J7E_A 1J78_A 1LOT_A.
Probab=44.58 E-value=72 Score=19.68 Aligned_cols=32 Identities=9% Similarity=0.127 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Q psy5676 44 DLRIEAVLLRARFDKHKDEKDLVKIRALLAEG 75 (96)
Q Consensus 44 ~~r~~a~~iR~~Fe~nk~vtD~~~I~~Ll~~g 75 (96)
.|-+++.++.+.|++.---..|.+++.|+++-
T Consensus 10 tFtEyKKrL~e~l~~k~P~at~~~l~~lve~R 41 (68)
T PF09164_consen 10 TFTEYKKRLAERLRAKLPDATPTELKELVEKR 41 (68)
T ss_dssp -HHHHHHHHHHHHHHH-TTS-HHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 35556678999999988888999999999763
No 12
>KOG0489|consensus
Probab=41.96 E-value=24 Score=26.54 Aligned_cols=37 Identities=19% Similarity=0.094 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHhhcCCCCHH--HHHHHHHHHHHHHhhc
Q psy5676 46 RIEAVLLRARFDKHKDEKDLV--KIRALLAEGEKELFET 82 (96)
Q Consensus 46 r~~a~~iR~~Fe~nk~vtD~~--~I~~Ll~~g~~~L~~~ 82 (96)
++...++-.||.-|+.+|=.+ +|...|.-.|.+++.|
T Consensus 168 ~~QllELEkEFhfN~YLtR~RRiEiA~~L~LtErQIKIW 206 (261)
T KOG0489|consen 168 RYQLLELEKEFHFNKYLTRSRRIEIAHALNLTERQIKIW 206 (261)
T ss_pred hhhhhhhhhhhccccccchHHHHHHHhhcchhHHHHHHH
Confidence 355679999999999998775 6667777888877765
No 13
>KOG0810|consensus
Probab=40.78 E-value=1.6e+02 Score=22.92 Aligned_cols=66 Identities=23% Similarity=0.289 Sum_probs=44.8
Q ss_pred CCccchHHHHHHHHHHHHHHHhhcccchHHHHHH-HHHH-HHHHHhhcCCCCHHHHHHHHHHHHHHHh
Q psy5676 15 FELPTHRRQVQSLYKRAVRNLEAYHSDIVDLRIE-AVLL-RARFDKHKDEKDLVKIRALLAEGEKELF 80 (96)
Q Consensus 15 ~~~~~~r~~Vl~LYR~~LR~~~~~~~~r~~~r~~-a~~i-R~~Fe~nk~vtD~~~I~~Ll~~g~~~L~ 80 (96)
++...-|.|.-.+.|.+......|..-+..|+.. ..+| |..|-.++..++-++|+.+++.|.-+.+
T Consensus 116 ~~~r~rrtq~~~~~kkf~~~M~~f~~~~~~~r~~~k~~i~Rql~i~~~~~~~de~ie~~ie~g~~~~f 183 (297)
T KOG0810|consen 116 AGLRTRRTQTSALSKKLKELMNEFNRTQSKYREEYKERIQRQLFIVGGEETTDEEIEEMIESGGSEVF 183 (297)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCcCChHHHHHHHHCCChHHH
Confidence 3344445566666688888888887766666643 3344 4555666668899999999998875543
No 14
>PF04695 Pex14_N: Peroxisomal membrane anchor protein (Pex14p) conserved region; InterPro: IPR006785 This conserved region defines a group of peroxisomal membrane anchor proteins which bind the PTS1 (peroxisomal targeting signal) receptor and are required for the import of PTS1-containing proteins into peroxisomes. Loss of functional Pex14p results in defects in both the PTS1 and PTS2-dependent import pathways. Deletion analysis of this conserved region implicates it in selective peroxisome degradation. In the majority of members this region is situated at the N terminus of the protein [, ].; GO: 0005777 peroxisome, 0016020 membrane; PDB: 2W85_A 2W84_A 3FF5_B.
Probab=39.11 E-value=41 Score=22.78 Aligned_cols=27 Identities=15% Similarity=0.060 Sum_probs=18.4
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHH
Q psy5676 52 LRARFDKHKDEKDLVKIRALLAEGEKEL 79 (96)
Q Consensus 52 iR~~Fe~nk~vtD~~~I~~Ll~~g~~~L 79 (96)
=|.+|-+.|+++ .++|++++.+....-
T Consensus 25 ~k~~FL~sKGLt-~~EI~~al~~a~~~~ 51 (136)
T PF04695_consen 25 KKIAFLESKGLT-EEEIDEALGRAGSPP 51 (136)
T ss_dssp HHHHHHHHCT---HHHHHHHHHHHT--S
T ss_pred HHHHHHHcCCCC-HHHHHHHHHhcCCcc
Confidence 478999999999 567888888766544
No 15
>PF06676 DUF1178: Protein of unknown function (DUF1178); InterPro: IPR009562 This family consists of several hypothetical bacterial proteins of around 150 residues in length. The function of this family is unknown.
Probab=33.38 E-value=1.1e+02 Score=21.47 Aligned_cols=57 Identities=14% Similarity=0.190 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHhhcccch-HHHHHHHHHHHHHHHhhcCC---CCHHHHHHHHHHHHH
Q psy5676 21 RRQVQSLYKRAVRNLEAYHSDI-VDLRIEAVLLRARFDKHKDE---KDLVKIRALLAEGEK 77 (96)
Q Consensus 21 r~~Vl~LYR~~LR~~~~~~~~r-~~~r~~a~~iR~~Fe~nk~v---tD~~~I~~Ll~~g~~ 77 (96)
.+.+..+++++.+.+..-..+- +.|-..+++|...=...|.+ +.+++.+.|+++|-.
T Consensus 76 ~~~~~~~l~~~~~~v~~n~e~VG~~FAeEAR~iHyGea~~R~I~G~at~eE~~~L~eEGI~ 136 (148)
T PF06676_consen 76 PAELEAALRKLRRHVEKNSEDVGDRFAEEARKIHYGEAEERGIYGEATPEEAKELIEEGIE 136 (148)
T ss_pred HHHHHHHHHHHHHHHHHhCcchhHHHHHHHHHHHcCCCccccCcCcCCHHHHHHHHHcCCe
Confidence 4678888888888885533211 44555666666544444444 789999999999854
No 16
>PF04282 DUF438: Family of unknown function (DUF438); InterPro: IPR007380 This is a a group of uncharacterised proteins.
Probab=32.20 E-value=60 Score=20.05 Aligned_cols=25 Identities=24% Similarity=0.413 Sum_probs=18.3
Q ss_pred HHHHHHHhhcCCCCHHHH----HHHHHHH
Q psy5676 51 LLRARFDKHKDEKDLVKI----RALLAEG 75 (96)
Q Consensus 51 ~iR~~Fe~nk~vtD~~~I----~~Ll~~g 75 (96)
.+|++|.++=.--|+.+| +.|+++|
T Consensus 17 ~vk~~F~~~~~~Vs~~EI~~~Eq~Li~eG 45 (71)
T PF04282_consen 17 EVKEEFKKLFSDVSASEISAAEQELIQEG 45 (71)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHcC
Confidence 689999888777778777 3556555
No 17
>COG5319 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.64 E-value=1.3e+02 Score=21.07 Aligned_cols=67 Identities=12% Similarity=0.144 Sum_probs=42.2
Q ss_pred cCCCCccchHHHHHHHHHHHHHHHhhcccch-HHHHHHHHHHHHHHHhhcCC---CCHHHHHHHHHHHHHH
Q psy5676 12 QIPFELPTHRRQVQSLYKRAVRNLEAYHSDI-VDLRIEAVLLRARFDKHKDE---KDLVKIRALLAEGEKE 78 (96)
Q Consensus 12 ~~p~~~~~~r~~Vl~LYR~~LR~~~~~~~~r-~~~r~~a~~iR~~Fe~nk~v---tD~~~I~~Ll~~g~~~ 78 (96)
..+...-..+++++.-|+.+.|..+....+- +.|-..+++|.-.=-.-+.+ +.++++..|+++|-+-
T Consensus 61 r~~~~~~~a~ke~~a~~~~~~r~vreNad~VGekFaeEARkiHygea~eRGI~GeaS~eEa~aL~EdGvei 131 (142)
T COG5319 61 RQALAMDEAQKEALAKMREAVRHVRENADYVGEKFAEEARKIHYGEADERGIYGEASHEEAKALAEDGVEI 131 (142)
T ss_pred hhhhccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccCCccccccCcCCHHHHHHHHHcCcee
Confidence 3444555678899999999999997755422 33444455554322233333 6678888888888543
No 18
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=30.76 E-value=1.4e+02 Score=18.84 Aligned_cols=56 Identities=18% Similarity=0.246 Sum_probs=30.4
Q ss_pred HHHHHHHHHhhcccchHHHHH-HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhccCCCCCCC
Q psy5676 27 LYKRAVRNLEAYHSDIVDLRI-EAVLLRARFDKHKDEKDLVKIRALLAEGEKELFETTHPSPIKF 90 (96)
Q Consensus 27 LYR~~LR~~~~~~~~r~~~r~-~a~~iR~~Fe~nk~vtD~~~I~~Ll~~g~~~L~~~~hp~Py~~ 90 (96)
-|+.++....+-.. . .|. ....+|.-++++. .+...+..++. -.+...+|+|||++
T Consensus 4 ~~~~al~~L~dp~~--P-vRa~gL~~L~~Li~~~~--~~~~~~~~il~---l~l~~L~d~DsyVY 60 (92)
T PF10363_consen 4 TLQEALSDLNDPLP--P-VRAHGLVLLRKLIESKS--EPVIDIPKILD---LFLSQLKDEDSYVY 60 (92)
T ss_pred HHHHHHHHccCCCc--c-hHHHHHHHHHHHHHcCC--cchhhHHHHHH---HHHHHcCCCCchHH
Confidence 35555555543211 1 132 2347888888877 23333444433 33456679999975
No 19
>KOG4263|consensus
Probab=28.67 E-value=1.4e+02 Score=23.25 Aligned_cols=49 Identities=20% Similarity=0.227 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhcCCCCH--HHHHHHHH
Q psy5676 22 RQVQSLYKRAVRNLEAYHSDIVDLRIEAVLLRARFDKHKDEKDL--VKIRALLA 73 (96)
Q Consensus 22 ~~Vl~LYR~~LR~~~~~~~~r~~~r~~a~~iR~~Fe~nk~vtD~--~~I~~Ll~ 73 (96)
=+|+.|||-++.-++.+..|-..|+. .-|..-+-++.++|. ++.|.|.+
T Consensus 55 Pk~~~Lyr~f~~G~~~~faD~K~~~k---ikr~~~~~~~k~~~L~~~ElE~l~Q 105 (299)
T KOG4263|consen 55 PKVLALYRTFLEGSRWCFADVKMYFK---IKRAVATGQKKLTDLSVEELETLVQ 105 (299)
T ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHH---HHHHHhcCccchhhCCHHHHHHHHh
Confidence 47899999999999875554444443 346666777777765 56665554
No 20
>PF07438 DUF1514: Protein of unknown function (DUF1514); InterPro: IPR009999 This entry is represented by Bacteriophage phi PVL, Orf60. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several Staphylococcus aureus and related bacteriophage proteins of around 65 residues in length. The function of this family is unknown.
Probab=26.22 E-value=1.6e+02 Score=18.01 Aligned_cols=38 Identities=13% Similarity=0.100 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHh
Q psy5676 43 VDLRIEAVLLRARFDKHKDEKDLVKIRALLAEGEKELF 80 (96)
Q Consensus 43 ~~~r~~a~~iR~~Fe~nk~vtD~~~I~~Ll~~g~~~L~ 80 (96)
+.+++.-..+..+|-++++..+.++.+.-++...++++
T Consensus 28 ealkY~N~yL~~~~v~~~g~~gl~~~~~e~~r~~~~~k 65 (66)
T PF07438_consen 28 EALKYMNDYLFDQFVRDNGYEGLEEYEIEIERIKKDFK 65 (66)
T ss_pred HHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhc
Confidence 33454445788999999999999888888887776654
No 21
>PHA02571 a-gt.4 hypothetical protein; Provisional
Probab=25.89 E-value=2.1e+02 Score=19.20 Aligned_cols=59 Identities=15% Similarity=0.196 Sum_probs=43.8
Q ss_pred chHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhc
Q psy5676 19 THRRQVQSLYKRAVRNLEAYHSDIVDLRIEAVLLRARFDKHKDEKDLVKIRALLAEGEKELFET 82 (96)
Q Consensus 19 ~~r~~Vl~LYR~~LR~~~~~~~~r~~~r~~a~~iR~~Fe~nk~vtD~~~I~~Ll~~g~~~L~~~ 82 (96)
.+++.+-+|++++-..+.+-.- +-|-|...++|+-..+- -+.+.|+-|-.....++..+
T Consensus 41 KN~rEIkRL~~HAe~al~~~Nk--~~Y~YAI~KLR~i~kQp---~~de~i~tmW~TSrqqi~di 99 (109)
T PHA02571 41 KNRREIKRLKKHAEEALFDNNK--EQYVYAIKKLRDIYKQP---YTDELIETMWETSRQQILDM 99 (109)
T ss_pred HhHHHHHHHHHHHHHHHHhcCH--HHHHHHHHHHHHHHcCC---CcHHHHHHHHHHHHHHHHHH
Confidence 4788999999999988876433 55566667999998774 45677777777777776654
No 22
>PRK00396 rnpA ribonuclease P; Reviewed
Probab=25.29 E-value=2.2e+02 Score=19.21 Aligned_cols=47 Identities=21% Similarity=0.335 Sum_probs=27.9
Q ss_pred HHHHHHHHHhhcCC----------------CCHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCC
Q psy5676 49 AVLLRARFDKHKDE----------------KDLVKIRALLAEGEKELFETTHPSPIKFPTSPGL 96 (96)
Q Consensus 49 a~~iR~~Fe~nk~v----------------tD~~~I~~Ll~~g~~~L~~~~hp~Py~~p~~pg~ 96 (96)
.+.+|+.|+.|++. .|..+++.-+...-..+. ..-..|--+..|||.
T Consensus 67 KR~lRE~fR~~~~~l~g~DiVviaR~~~~~~~~~~l~~~l~~ll~kl~-~~~~~~~~~~~~~~~ 129 (130)
T PRK00396 67 KRLIRESFRLNQHSLAGWDIVVVARKGLGELENPELHQQFGKLWKRLA-RNRPNPAASAESPGV 129 (130)
T ss_pred HHHHHHHHHHhhccCCCeeEEEEeCCCcccCCHHHHHHHHHHHHHHHH-HhcCCCCCcCCCCCC
Confidence 34666777666542 344455555555444442 334588888999985
No 23
>COG2924 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.60 E-value=2.4e+02 Score=18.24 Aligned_cols=36 Identities=22% Similarity=0.118 Sum_probs=28.1
Q ss_pred hhcCCCCHHHHHHHHHHHHHHHhhcc--CCCCCCCCCC
Q psy5676 58 KHKDEKDLVKIRALLAEGEKELFETT--HPSPIKFPTS 93 (96)
Q Consensus 58 ~nk~vtD~~~I~~Ll~~g~~~L~~~~--hp~Py~~p~~ 93 (96)
+.-+.-|++.-+.|-++-.+.|.+.. |++=|++|++
T Consensus 53 ~rLnm~n~e~Rk~Leqem~~flf~~~~~~~~GYvpp~~ 90 (90)
T COG2924 53 KRLNMMNAEHRKLLEQEMVNFLFEGKAVHIEGYVPPDK 90 (90)
T ss_pred hhcCcCCHHHHHHHHHHHHHHhhcCccccccccCCCCC
Confidence 33456789888888888888888765 8888999974
No 24
>COG1753 Predicted antotoxin, copG family [Signal transduction mechanisms]
Probab=21.43 E-value=2.2e+02 Score=17.81 Aligned_cols=70 Identities=13% Similarity=0.037 Sum_probs=34.4
Q ss_pred CCCccchHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHH---hhcCCCCHHHHHHHHHHHHHHHhhccCCCC
Q psy5676 14 PFELPTHRRQVQSLYKRAVRNLEAYHSDIVDLRIEAVLLRARFD---KHKDEKDLVKIRALLAEGEKELFETTHPSP 87 (96)
Q Consensus 14 p~~~~~~r~~Vl~LYR~~LR~~~~~~~~r~~~r~~a~~iR~~Fe---~nk~vtD~~~I~~Ll~~g~~~L~~~~hp~P 87 (96)
|+++++-+-.| |..+++.=..--...+..+...-+=|.-++ .....-..+++++++.++.+..+ .+|.+|
T Consensus 2 ~~kTItI~ddv---Ye~L~kmK~g~~SFSdvI~~l~~kKr~~levl~~~~g~~s~eEvek~~~e~~~aek-mrs~~~ 74 (74)
T COG1753 2 PTKTITISDDV---YEKLVKMKRGKESFSDVIRELIEKKRGNLEVLMRAFGTLSEEEVEKIKKEEKEAEK-MRSLDS 74 (74)
T ss_pred CcceeeecHHH---HHHHHHHHcccccHHHHHHHHHHHhhhhHHHHHHHhCCCcHHHHHHHHHHHHHHHH-HHcccC
Confidence 45555554444 666666552211222222211112222222 44444455677778877776666 666654
No 25
>PF12960 DUF3849: Protein of unknown function (DUF3849); InterPro: IPR024383 This domain is found in a family of uncharacterised proteins found by clustering human gut metagenomic sequences [].
Probab=20.28 E-value=2.5e+02 Score=19.39 Aligned_cols=45 Identities=11% Similarity=0.162 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Q psy5676 22 RQVQSLYKRAVRNLEAYHSDIVDLRIEAVLLRARFDKHKDEKDLVKIRALLAE 74 (96)
Q Consensus 22 ~~Vl~LYR~~LR~~~~~~~~r~~~r~~a~~iR~~Fe~nk~vtD~~~I~~Ll~~ 74 (96)
.-=+.+||.+.+.--+.... +-..|+.-|+.| .+. ++.++.+|++
T Consensus 13 ~gEl~~~raS~~aN~~Ck~a------IE~aI~~~~~~~-~L~-~~a~~~vie~ 57 (133)
T PF12960_consen 13 HGELAQYRASRKANIACKEA------IEQAIREHFDGN-RLD-PDAVKEVIEK 57 (133)
T ss_pred cCcHHHHHHHHHhhHHHHHH------HHHHHHHHcCCC-cCC-HHHHHHHHHH
Confidence 34467777776654333221 223689999988 465 6677777663
Done!