Query psy5676
Match_columns 96
No_of_seqs 115 out of 493
Neff 6.2
Searched_HMMs 29240
Date Fri Aug 16 23:46:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5676.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5676hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b6x_A AVRRPS4, avirulence pro 46.2 21 0.00073 22.0 3.2 34 50-83 39-75 (90)
2 2g8l_A 287AA long hypothetical 42.2 99 0.0034 22.6 7.5 60 27-89 23-84 (299)
3 2qsr_A Transcription-repair co 42.1 29 0.001 23.5 3.8 58 10-77 16-73 (173)
4 2w84_A Peroxisomal membrane pr 40.8 32 0.0011 20.5 3.3 23 52-75 37-59 (70)
5 2ffj_A Conserved hypothetical 40.3 1.1E+02 0.0036 22.4 7.9 59 27-88 23-83 (300)
6 3ff5_A PEX14P, peroxisomal bio 31.5 72 0.0025 17.9 5.8 22 52-74 32-53 (54)
7 2ke4_A CDC42-interacting prote 24.2 1.3E+02 0.0045 18.5 4.9 36 46-81 38-73 (98)
8 1q8h_A Osteocalcin; helix-turn 22.0 1.1E+02 0.0038 16.8 3.3 31 10-40 8-38 (49)
9 1vzm_A Osteocalcin; calcium-bi 17.2 60 0.002 17.7 1.4 23 17-39 9-31 (45)
10 2keb_A DNA polymerase subunit 15.6 2.2E+02 0.0076 17.9 3.9 28 49-76 28-55 (101)
No 1
>4b6x_A AVRRPS4, avirulence protein; toxin, type 3 secreted effector; 2.20A {Pseudomonas syringae PV}
Probab=46.15 E-value=21 Score=22.04 Aligned_cols=34 Identities=18% Similarity=0.202 Sum_probs=28.7
Q ss_pred HHHHHHHHhhcCCCCHHHH---HHHHHHHHHHHhhcc
Q psy5676 50 VLLRARFDKHKDEKDLVKI---RALLAEGEKELFETT 83 (96)
Q Consensus 50 ~~iR~~Fe~nk~vtD~~~I---~~Ll~~g~~~L~~~~ 83 (96)
.-++++..+..+..+|.+| +.++.++...|.+++
T Consensus 39 ~~Lt~eLq~A~~eaNpaeIA~~~~~L~qAraDL~~l~ 75 (90)
T 4b6x_A 39 NNLTDELQDAIDEANPAEIANTSQQLRHARADLADLQ 75 (90)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHhHHHHHHHHHHHHHHHH
Confidence 4689999999999999988 579999998887653
No 2
>2g8l_A 287AA long hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.04A {Pyrococcus horikoshii} SCOP: e.50.1.1
Probab=42.19 E-value=99 Score=22.62 Aligned_cols=60 Identities=17% Similarity=0.118 Sum_probs=32.1
Q ss_pred HHHHHHHHHhhcccchHHHHHHHHHHHHHHHh--hcCCCCHHHHHHHHHHHHHHHhhccCCCCCC
Q psy5676 27 LYKRAVRNLEAYHSDIVDLRIEAVLLRARFDK--HKDEKDLVKIRALLAEGEKELFETTHPSPIK 89 (96)
Q Consensus 27 LYR~~LR~~~~~~~~r~~~r~~a~~iR~~Fe~--nk~vtD~~~I~~Ll~~g~~~L~~~~hp~Py~ 89 (96)
+.++..+.++....|.+..+.....++..|.+ ..+.+.|.....+...-.+.+ ..+|||.
T Consensus 23 ~~~q~~~~~~~~~~d~~~~~~i~~~~~~~l~~~~~~~~~p~~~~~~l~r~i~~~~---g~~DPy~ 84 (299)
T 2g8l_A 23 MANQCQRIVEMATQDMDIRRRAMILAAKLLAKEYNENAIPAIAGSLIFLELYKFL---GNDDPFI 84 (299)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHHHH---TCSCTTH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHc---CCCCChH
Confidence 45667777766655544444344456666654 233444444455555444443 4667773
No 3
>2qsr_A Transcription-repair coupling factor; structural genomics, PSI-2, protein ST initiative; 3.10A {Streptococcus pneumoniae}
Probab=42.07 E-value=29 Score=23.47 Aligned_cols=58 Identities=19% Similarity=0.131 Sum_probs=40.6
Q ss_pred hccCCCCccchHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Q psy5676 10 AIQIPFELPTHRRQVQSLYKRAVRNLEAYHSDIVDLRIEAVLLRARFDKHKDEKDLVKIRALLAEGEK 77 (96)
Q Consensus 10 a~~~p~~~~~~r~~Vl~LYR~~LR~~~~~~~~r~~~r~~a~~iR~~Fe~nk~vtD~~~I~~Ll~~g~~ 77 (96)
..+||..+++.-.+=+++||++-... +-+.......++.++|=. =|..++.|+.-++-
T Consensus 16 ~A~IP~~YI~d~~~RL~lYkria~~~-----~~eel~~l~~EL~DRFG~-----lP~~v~~Ll~v~~l 73 (173)
T 2qsr_A 16 DAYLPDTYISDQRHKIEIYKKIRQID-----NRVNYEELQEELIDRFGE-----YPDVVAYLLEIGLV 73 (173)
T ss_dssp CCCCCTTTCCCHHHHHHHHHHHHTCC-----SHHHHHHHHHHHHHHHCS-----CCHHHHHHHHHHHH
T ss_pred CccCChhhcCCHHHHHHHHHHHHcCC-----CHHHHHHHHHHHHHHCCC-----CcHHHHHHHHHHHH
Confidence 46899999999899999999875432 223444455678888843 36677777776653
No 4
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=40.75 E-value=32 Score=20.45 Aligned_cols=23 Identities=22% Similarity=0.156 Sum_probs=18.6
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHH
Q psy5676 52 LRARFDKHKDEKDLVKIRALLAEG 75 (96)
Q Consensus 52 iR~~Fe~nk~vtD~~~I~~Ll~~g 75 (96)
-+.+|-+.|++| .++|+.+++++
T Consensus 37 ~K~~FL~sKGLt-~eEI~~Al~ra 59 (70)
T 2w84_A 37 TRRAFLKKKGLT-DEEIDMAFQQS 59 (70)
T ss_dssp HHHHHHHHTTCC-HHHHHHHHHHH
T ss_pred HHHHHHHHcCCC-HHHHHHHHHHc
Confidence 477899999999 56788888775
No 5
>2ffj_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.45A {Archaeoglobus fulgidus} SCOP: e.50.1.1
Probab=40.31 E-value=1.1e+02 Score=22.39 Aligned_cols=59 Identities=8% Similarity=-0.111 Sum_probs=24.8
Q ss_pred HHHHHHHHHhhcccchHHHHHHHHHHHHHHHh--hcCCCCHHHHHHHHHHHHHHHhhccCCCCC
Q psy5676 27 LYKRAVRNLEAYHSDIVDLRIEAVLLRARFDK--HKDEKDLVKIRALLAEGEKELFETTHPSPI 88 (96)
Q Consensus 27 LYR~~LR~~~~~~~~r~~~r~~a~~iR~~Fe~--nk~vtD~~~I~~Ll~~g~~~L~~~~hp~Py 88 (96)
+.++..+.++....|.+..+.....++..|.+ ....+.+.....+...-...+ ..+|||
T Consensus 23 ~~~q~~~~~~~~~~d~~~~~~i~~~~~~~l~~~~~~~~~p~~~~~~lyr~i~~~~---g~~Dpf 83 (300)
T 2ffj_A 23 LLGRVYYEAKLVTDDEDLISQCVDESLKILAENYSSRPINAHLATRIHRRVYEIL---GVEDPY 83 (300)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHH---TCSCTT
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHc---CCCCch
Confidence 34555555555444433333233344444433 223344444444544444333 355665
No 6
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=31.55 E-value=72 Score=17.89 Aligned_cols=22 Identities=27% Similarity=0.280 Sum_probs=16.6
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHH
Q psy5676 52 LRARFDKHKDEKDLVKIRALLAE 74 (96)
Q Consensus 52 iR~~Fe~nk~vtD~~~I~~Ll~~ 74 (96)
-+.+|-+.|++|+ ++|+.+++.
T Consensus 32 ~K~~FL~sKGLt~-~EI~~Al~r 53 (54)
T 3ff5_A 32 TRRAFLKKKGLTD-EEIDLAFQQ 53 (54)
T ss_dssp HHHHHHHHTTCCH-HHHHHHHHH
T ss_pred HHHHHHHHcCCCH-HHHHHHHHc
Confidence 4778999999994 567777654
No 7
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=24.24 E-value=1.3e+02 Score=18.54 Aligned_cols=36 Identities=14% Similarity=0.167 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhh
Q psy5676 46 RIEAVLLRARFDKHKDEKDLVKIRALLAEGEKELFE 81 (96)
Q Consensus 46 r~~a~~iR~~Fe~nk~vtD~~~I~~Ll~~g~~~L~~ 81 (96)
|....++...+.+|-+..|+..++..|.+....|+.
T Consensus 38 regl~Km~~vY~~nP~~GD~~s~~~~L~e~~~kid~ 73 (98)
T 2ke4_A 38 REALKKMKDVYEKTPQMGDPASLEPQIAETLSNIER 73 (98)
T ss_dssp HTHHHHHHHHHHHCGGGCCGGGSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccCCHHHHHHHHHHHHHHHHH
Confidence 445568999999999999999888777777666553
No 8
>1q8h_A Osteocalcin; helix-turn-helix-turn-helix, paper-CLIP, hydroxyapatite CRYS surface binding protein, calcium binding protein; HET: CGU; 2.00A {Sus scrofa} SCOP: g.32.1.1 PDB: 1q3m_A*
Probab=21.97 E-value=1.1e+02 Score=16.84 Aligned_cols=31 Identities=16% Similarity=-0.085 Sum_probs=20.2
Q ss_pred hccCCCCccchHHHHHHHHHHHHHHHhhccc
Q psy5676 10 AIQIPFELPTHRRQVQSLYKRAVRNLEAYHS 40 (96)
Q Consensus 10 a~~~p~~~~~~r~~Vl~LYR~~LR~~~~~~~ 40 (96)
|+...+.-+..+++||.+|..+=+.+...-.
T Consensus 8 ~~~~~k~plE~~rEvCE~~~~C~~~A~~~G~ 38 (49)
T 1q8h_A 8 APAPYPDPLEPRREVCELNPDCDELADHIGF 38 (49)
T ss_dssp -----CCTTHHHHHHHHHSHHHHHHHHHHCH
T ss_pred ccccCCChhHHHHHHhccchhHHHHHHHHHH
Confidence 3444444556788999999999888876543
No 9
>1vzm_A Osteocalcin; calcium-binding protein, bone GLA protein, BGP, hydroxyapatite, gamma carboxyl glutamic acid, vitamin K, bone, mineralization; HET: CGU; 1.4A {Argyrosomus regius}
Probab=17.17 E-value=60 Score=17.66 Aligned_cols=23 Identities=13% Similarity=-0.062 Sum_probs=17.9
Q ss_pred ccchHHHHHHHHHHHHHHHhhcc
Q psy5676 17 LPTHRRQVQSLYKRAVRNLEAYH 39 (96)
Q Consensus 17 ~~~~r~~Vl~LYR~~LR~~~~~~ 39 (96)
-+..+++||.+|..+=+.+...-
T Consensus 9 p~E~~rEvCE~~~~C~~~A~~~G 31 (45)
T 1vzm_A 9 QTESLREVCETNMACDEMADAQG 31 (45)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hhHHHHHHhccchhHHHHHHHHH
Confidence 34568899999999988886653
No 10
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=15.58 E-value=2.2e+02 Score=17.92 Aligned_cols=28 Identities=14% Similarity=-0.002 Sum_probs=20.7
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHH
Q psy5676 49 AVLLRARFDKHKDEKDLVKIRALLAEGE 76 (96)
Q Consensus 49 a~~iR~~Fe~nk~vtD~~~I~~Ll~~g~ 76 (96)
+..|+++|+.=--.-+.+.|++|++-+.
T Consensus 28 ae~L~eEfdefGi~~~d~VldKc~ELC~ 55 (101)
T 2keb_A 28 AQQLAEELQIFGLDCEEALIEKLVELCV 55 (101)
T ss_dssp HHHHHHHHHHHTCBCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 3578999987655455589999988654
Done!