Query psy5676
Match_columns 96
No_of_seqs 115 out of 493
Neff 6.2
Searched_HMMs 13730
Date Fri Aug 16 23:46:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5676.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/5676hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2csba1 a.60.2.4 (A:351-409) T 43.2 5.4 0.00039 21.1 1.5 28 49-76 17-46 (59)
2 d1v9va1 a.29.10.1 (A:8-108) Mi 39.6 34 0.0024 20.2 7.8 65 21-85 35-99 (101)
3 d2eyqa6 d.315.1.1 (A:990-1147) 36.2 25 0.0018 21.3 4.3 57 10-76 20-76 (158)
4 d1kxpd3 a.126.1.1 (D:405-473) 34.4 34 0.0025 18.8 4.6 31 45-75 11-41 (69)
5 d1nf4a_ a.25.1.1 (A:) Bacterio 27.2 60 0.0044 19.3 6.8 71 19-95 94-167 (169)
6 d1mixa1 a.11.2.1 (A:195-308) T 24.2 34 0.0024 19.3 3.1 17 51-67 24-40 (114)
7 d1gwca1 a.45.1.1 (A:87-224) Cl 20.0 48 0.0035 18.4 3.2 30 67-96 45-74 (138)
8 d1gvfa_ c.1.10.2 (A:) Tagatose 17.7 1.4E+02 0.01 20.0 6.4 42 27-68 216-258 (284)
9 d2pq6a1 c.87.1.10 (A:8-480) (I 13.1 1.4E+02 0.01 19.2 4.7 31 44-74 437-469 (473)
10 d2o8ra4 d.136.1.4 (A:506-691) 13.0 50 0.0036 21.3 2.1 19 61-79 38-56 (186)
No 1
>d2csba1 a.60.2.4 (A:351-409) Topoisomerase V {Methanopyrus kandleri [TaxId: 2320]}
Probab=43.17 E-value=5.4 Score=21.14 Aligned_cols=28 Identities=29% Similarity=0.344 Sum_probs=22.9
Q ss_pred HHHHHHHHHhhcCC--CCHHHHHHHHHHHH
Q psy5676 49 AVLLRARFDKHKDE--KDLVKIRALLAEGE 76 (96)
Q Consensus 49 a~~iR~~Fe~nk~v--tD~~~I~~Ll~~g~ 76 (96)
+.++-.-|+.-..+ +|.++|+.++++|.
T Consensus 17 adeliehfesiagilatdleeiermyeegr 46 (59)
T d2csba1 17 ADELIEHFESIAGILATDLEEIERMYEEGR 46 (59)
T ss_dssp HHHHHHHHSSHHHHHTSCHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHccc
Confidence 45677788877765 99999999999885
No 2
>d1v9va1 a.29.10.1 (A:8-108) Microtubule-associated serine/threonine-protein kinase 3, MAST3 (KIAA0561) {Human (Homo sapiens) [TaxId: 9606]}
Probab=39.63 E-value=34 Score=20.25 Aligned_cols=65 Identities=11% Similarity=0.056 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhccCC
Q psy5676 21 RRQVQSLYKRAVRNLEAYHSDIVDLRIEAVLLRARFDKHKDEKDLVKIRALLAEGEKELFETTHP 85 (96)
Q Consensus 21 r~~Vl~LYR~~LR~~~~~~~~r~~~r~~a~~iR~~Fe~nk~vtD~~~I~~Ll~~g~~~L~~~~hp 85 (96)
.-||+.|=|.||..+++--....+|.+.-..+-.-..+.+.=++++++..+-.--++-|-...-|
T Consensus 35 hHQiiElARDCL~KS~e~lITs~YF~Else~LekLl~ea~erSe~~~~~~i~~lvkkLL~IIsRP 99 (101)
T d1v9va1 35 HHQIVELARDCLAKSGENLVTSRYFLEMQEKLERLLQDAHERSDSEEVSFIVQLVRKLLIIISRP 99 (101)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhhcccC
Confidence 46999999999999988666556666555567777777676677777665555555555544433
No 3
>d2eyqa6 d.315.1.1 (A:990-1147) Transcription-repair coupling factor, TRCF, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=36.20 E-value=25 Score=21.25 Aligned_cols=57 Identities=23% Similarity=0.149 Sum_probs=38.2
Q ss_pred hccCCCCccchHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Q psy5676 10 AIQIPFELPTHRRQVQSLYKRAVRNLEAYHSDIVDLRIEAVLLRARFDKHKDEKDLVKIRALLAEGE 76 (96)
Q Consensus 10 a~~~p~~~~~~r~~Vl~LYR~~LR~~~~~~~~r~~~r~~a~~iR~~Fe~nk~vtD~~~I~~Ll~~g~ 76 (96)
.+++|..+++.-.+=+.+||++-...- -........++.++|=. =|.+++.|+.-++
T Consensus 20 ~a~IP~~YI~d~~~Rl~~Ykrla~~~~-----~~el~~i~~El~DRFG~-----lP~ev~nLl~i~~ 76 (158)
T d2eyqa6 20 PSLLPDDFIPDVNTRLSFYKRIASAKT-----ENELEEIKVELIDRFGL-----LPDPARTLLDIAR 76 (158)
T ss_dssp CCSCCTTTSCCHHHHHHHHHHHHHCCS-----HHHHHHHHHHHHHHHCS-----CCHHHHHHHHHHH
T ss_pred CCccChHHcCCHHHHHHHHHHHHcccc-----HHHHHHHHHHHHHHcCC-----chHHHHHHHHHHH
Confidence 468999999999999999998765431 12333344567777733 3566666666555
No 4
>d1kxpd3 a.126.1.1 (D:405-473) Vitamin D binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=34.44 E-value=34 Score=18.82 Aligned_cols=31 Identities=10% Similarity=0.080 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Q psy5676 45 LRIEAVLLRARFDKHKDEKDLVKIRALLAEG 75 (96)
Q Consensus 45 ~r~~a~~iR~~Fe~nk~vtD~~~I~~Ll~~g 75 (96)
|-++..++.+.|+...--..|++++.|+++-
T Consensus 11 Fte~kkkL~e~lr~k~P~as~~~l~~mVekr 41 (69)
T d1kxpd3 11 FTEYKKKLAERLKAKLPDATPKELAKLVNKR 41 (69)
T ss_dssp HHHHHHHHHHHHHHHCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCCCCCHHHHHHHHHHH
Confidence 3445568999999988889999999999763
No 5
>d1nf4a_ a.25.1.1 (A:) Bacterioferritin (cytochrome b1) {Desulfovibrio desulfuricans [TaxId: 876]}
Probab=27.15 E-value=60 Score=19.35 Aligned_cols=71 Identities=8% Similarity=0.030 Sum_probs=41.5
Q ss_pred chHHHHHHHHHHHHHHHhhccc--chHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH-HHHHHhhccCCCCCCCCCCCC
Q psy5676 19 THRRQVQSLYKRAVRNLEAYHS--DIVDLRIEAVLLRARFDKHKDEKDLVKIRALLAE-GEKELFETTHPSPIKFPTSPG 95 (96)
Q Consensus 19 ~~r~~Vl~LYR~~LR~~~~~~~--~r~~~r~~a~~iR~~Fe~nk~vtD~~~I~~Ll~~-g~~~L~~~~hp~Py~~p~~pg 95 (96)
..-+.|.+.|+.+...+..-.+ -++.++ .+=.+-+ .|+.-.+.+-.+|+. |+.-|....-..+-..+.+-|
T Consensus 94 ~~E~~~~~~y~~~~~~A~~~~D~~t~~~l~----~il~eE~--~H~~~~e~~l~~i~~~G~~yl~~~~~~~~~~~~~~~~ 167 (169)
T d1nf4a_ 94 DQEDATIEAYSQFLKVCKEQGDIVTARLFE----RIIEEEQ--AHLTYYENIGSHIKNLGDTYLAKIAGTPSSTGTASKG 167 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHH----HHHHHHH--HHHHHHHHHHHHHHHHTHHHHHHHTTCCCCCSSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHH----HHHHHHH--HHHHHHHHHHHHHHHHhHHHHHHHhCCCCCCCCCCCC
Confidence 3567888999999998875322 233333 2223222 334445555555555 877777666656666666655
No 6
>d1mixa1 a.11.2.1 (A:195-308) Talin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=24.24 E-value=34 Score=19.31 Aligned_cols=17 Identities=12% Similarity=-0.021 Sum_probs=7.8
Q ss_pred HHHHHHHhhcCCCCHHH
Q psy5676 51 LLRARFDKHKDEKDLVK 67 (96)
Q Consensus 51 ~iR~~Fe~nk~vtD~~~ 67 (96)
.+|..+-..+--.+.+.
T Consensus 24 Q~k~dil~G~~~~~~~~ 40 (114)
T d1mixa1 24 QARDDILNGSHPVSFDK 40 (114)
T ss_dssp HHHHHHHTTSSCCCHHH
T ss_pred HHHHHHHCCCCCCCHHH
Confidence 34555544454444433
No 7
>d1gwca1 a.45.1.1 (A:87-224) Class tau GST {Aegilops tauschii, also known as Triticum tauschii [TaxId: 37682]}
Probab=20.01 E-value=48 Score=18.36 Aligned_cols=30 Identities=20% Similarity=0.008 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCCCCCCCC
Q psy5676 67 KIRALLAEGEKELFETTHPSPIKFPTSPGL 96 (96)
Q Consensus 67 ~I~~Ll~~g~~~L~~~~hp~Py~~p~~pg~ 96 (96)
+....+..++..|+......||...+.+|+
T Consensus 45 ~~~~~l~~~~~~l~~~l~~~~~l~Gd~~sl 74 (138)
T d1gwca1 45 QAFAAVGVLEGALRECSKGGGFFGGDGVGL 74 (138)
T ss_dssp HHHHHHHHHHHHHHHHCTTSCBTTBTSCCH
T ss_pred HHHHHHHHHHHHHHHHhCCCeeeccCCCcc
Confidence 344456677777777777789988887774
No 8
>d1gvfa_ c.1.10.2 (A:) Tagatose-1,6-bisphosphate aldolase {Escherichia coli [TaxId: 562]}
Probab=17.71 E-value=1.4e+02 Score=20.01 Aligned_cols=42 Identities=12% Similarity=-0.015 Sum_probs=28.7
Q ss_pred HHHHHHHHH-hhcccchHHHHHHHHHHHHHHHhhcCCCCHHHH
Q psy5676 27 LYKRAVRNL-EAYHSDIVDLRIEAVLLRARFDKHKDEKDLVKI 68 (96)
Q Consensus 27 LYR~~LR~~-~~~~~~r~~~r~~a~~iR~~Fe~nk~vtD~~~I 68 (96)
..+++.+.+ .++..+.+........+|+.|.+|.+..||..+
T Consensus 216 ~i~~ai~~Gi~KiNi~T~l~~a~~~~~~~~l~~n~~~~d~~~~ 258 (284)
T d1gvfa_ 216 FVRRTIELGVTKVNVATELKIAFAGAVKAWFAENPQGNDPRYY 258 (284)
T ss_dssp HHHHHHHTTEEEEEECHHHHHHHHHHHHHHHHHCTTCCCHHHH
T ss_pred HHHHHHHcCeEEEEechHHHHHHHHHHHHHHHhCCCCCCHHHH
Confidence 346666666 344445554444556899999999999998665
No 9
>d2pq6a1 c.87.1.10 (A:8-480) (Iso)flavonoid glycosyltransferase {Medicago truncatula [TaxId: 3880]}
Probab=13.15 E-value=1.4e+02 Score=19.17 Aligned_cols=31 Identities=6% Similarity=0.292 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHhhcC--CCCHHHHHHHHHH
Q psy5676 44 DLRIEAVLLRARFDKHKD--EKDLVKIRALLAE 74 (96)
Q Consensus 44 ~~r~~a~~iR~~Fe~nk~--vtD~~~I~~Ll~~ 74 (96)
.||..+.++++.+++.-. -+.-..|+.+|++
T Consensus 437 ~~r~~a~~l~~~~~~a~~~gg~s~~~~~~~i~~ 469 (473)
T d2pq6a1 437 KMKQKAMELKKKAEENTRPGGCSYMNLNKVIKD 469 (473)
T ss_dssp HHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 467788899999987532 2224456666654
No 10
>d2o8ra4 d.136.1.4 (A:506-691) Polyphosphate kinase, PPK {Porphyromonas gingivalis [TaxId: 837]}
Probab=13.00 E-value=50 Score=21.32 Aligned_cols=19 Identities=21% Similarity=0.162 Sum_probs=15.9
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q psy5676 61 DEKDLVKIRALLAEGEKEL 79 (96)
Q Consensus 61 ~vtD~~~I~~Ll~~g~~~L 79 (96)
+++|++.|++|++.+++-.
T Consensus 38 sL~D~~iI~~Ly~AS~aGV 56 (186)
T d2o8ra4 38 GLQDKNVITQLYRASEAGV 56 (186)
T ss_dssp CBCCHHHHHHHHHHHHTTC
T ss_pred cccCHHHHHHHHHHhcCCC
Confidence 5799999999999887543
Done!