RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy5676
         (96 letters)



>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 28.7 bits (63), Expect = 0.27
 Identities = 7/50 (14%), Positives = 17/50 (34%), Gaps = 2/50 (4%)

Query: 23  QVQSLYKRAVRNLEAYHSDIVDLRIEAVLLRARFDKHKDEKDLVKIRALL 72
            +Q L  +   N  +      ++++    ++A   +    K       LL
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE--NCLL 248



 Score = 26.7 bits (58), Expect = 1.5
 Identities = 13/67 (19%), Positives = 23/67 (34%), Gaps = 12/67 (17%)

Query: 1   MRLTLLARRAIQIPFELPTHRRQVQSLYKRAVRNLEAYHSDIVDLRIEAVLLRARFDKHK 60
            + +L+ ++  +    +P     +    K  + N  A H  IVD             K  
Sbjct: 412 HKYSLVEKQPKESTISIP----SIYLELKVKLENEYALHRSIVD--------HYNIPKTF 459

Query: 61  DEKDLVK 67
           D  DL+ 
Sbjct: 460 DSDDLIP 466



 Score = 25.2 bits (54), Expect = 4.6
 Identities = 21/89 (23%), Positives = 34/89 (38%), Gaps = 26/89 (29%)

Query: 3   LTLLARRAIQIPFELPTHRRQVQSLYKRAVRNLEAYHSDIVDLRIEAVLLR---ARFD-- 57
            +LL +     P +LP   R+V +   R +       S I      A  +R   A +D  
Sbjct: 304 KSLLLKYLDCRPQDLP---REVLTTNPRRL-------SII------AESIRDGLATWDNW 347

Query: 58  KHKDEKDLVKIRAL----LAEGE-KELFE 81
           KH +   L  I       L   E +++F+
Sbjct: 348 KHVNCDKLTTIIESSLNVLEPAEYRKMFD 376


>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
           vesicle, membrane, Ca structural protein; 7.94A {Bos
           taurus}
          Length = 190

 Score = 27.0 bits (59), Expect = 0.81
 Identities = 7/32 (21%), Positives = 11/32 (34%), Gaps = 3/32 (9%)

Query: 53  RARFDK---HKDEKDLVKIRALLAEGEKELFE 81
           R    K     D    V  +    + +K+L E
Sbjct: 91  REEQRKRLQELDAASKVMEQEWREKAKKDLEE 122


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 26.8 bits (58), Expect = 1.1
 Identities = 9/28 (32%), Positives = 15/28 (53%), Gaps = 5/28 (17%)

Query: 29 KRAVRNLEA----YHSDIVD-LRIEAVL 51
          K+A++ L+A    Y  D    L I+A +
Sbjct: 19 KQALKKLQASLKLYADDSAPALAIKATM 46


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
            acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
            synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 24.6 bits (53), Expect = 7.5
 Identities = 15/102 (14%), Positives = 29/102 (28%), Gaps = 47/102 (46%)

Query: 1    MRLT-------LLARRAIQIPFELPTHRRQVQSLYKRAVRNLEAY---HS---------- 40
            +  T        L  +A    FE          L  + +   +A    HS          
Sbjct: 1726 LSATQFTQPALTLMEKAA---FED---------LKSKGLIPADATFAGHSLGEYAALASL 1773

Query: 41   -DIVDLRIEAVLLRARFDKHKDEKDLVKIRALLAEGEKELFE 81
             D+  + IE+++            ++V  R +  +      E
Sbjct: 1774 ADV--MSIESLV------------EVVFYRGMTMQVAVPRDE 1801


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.323    0.138    0.390 

Gapped
Lambda     K      H
   0.267   0.0748    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,502,750
Number of extensions: 83053
Number of successful extensions: 185
Number of sequences better than 10.0: 1
Number of HSP's gapped: 185
Number of HSP's successfully gapped: 18
Length of query: 96
Length of database: 6,701,793
Length adjustment: 62
Effective length of query: 34
Effective length of database: 4,970,691
Effective search space: 169003494
Effective search space used: 169003494
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (23.4 bits)