RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5676
         (96 letters)



>d1v9fa_ d.265.1.3 (A:) Ribosomal large subunit pseudouridine
           synthase D, RluD {Escherichia coli [TaxId: 562]}
          Length = 250

 Score = 24.5 bits (52), Expect = 2.8
 Identities = 8/16 (50%), Positives = 13/16 (81%)

Query: 51  LLRARFDKHKDEKDLV 66
           ++RA F++HKDE D +
Sbjct: 235 VMRADFEEHKDEVDWL 250


>d1x9ma2 e.8.1.1 (A:211-704) T7 phage DNA polymerase
          {Bacteriophage T7 [TaxId: 10760]}
          Length = 494

 Score = 24.3 bits (51), Expect = 3.5
 Identities = 9/31 (29%), Positives = 15/31 (48%)

Query: 55 RFDKHKDEKDLVKIRALLAEGEKELFETTHP 85
           FD    E+  V++ A  +E  ++L ET   
Sbjct: 23 PFDTKAIEELYVELAARRSELLRKLTETFGS 53


>d2e9xc1 a.278.1.3 (C:1088-1192) GINS complex subunit 3, PSF3
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 105

 Score = 22.8 bits (49), Expect = 7.8
 Identities = 13/73 (17%), Positives = 26/73 (35%), Gaps = 7/73 (9%)

Query: 21 RRQVQSLYKRAVRNLEAYHSDIVDLR---IEAVLLRAR----FDKHKDEKDLVKIRALLA 73
           +     Y    + L     +  D+    ++  + R R      ++   +D   + A L 
Sbjct: 23 HKMGPHFYGFGSQLLHFDSPENADISQSLLQTFIGRFRRIMDSSQNAYNEDTSALVARLD 82

Query: 74 EGEKELFETTHPS 86
          E E+ LF+T    
Sbjct: 83 EMERGLFQTGQKG 95


>d1iq3a_ a.39.1.6 (A:) Pob1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 110

 Score = 22.3 bits (47), Expect = 9.8
 Identities = 4/20 (20%), Positives = 7/20 (35%)

Query: 1   MRLTLLARRAIQIPFELPTH 20
             L +  +    +P  LP  
Sbjct: 82  FHLIVARKNGYPLPEGLPPT 101


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.138    0.390 

Gapped
Lambda     K      H
   0.267   0.0649    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 350,805
Number of extensions: 14575
Number of successful extensions: 47
Number of sequences better than 10.0: 1
Number of HSP's gapped: 47
Number of HSP's successfully gapped: 10
Length of query: 96
Length of database: 2,407,596
Length adjustment: 59
Effective length of query: 37
Effective length of database: 1,597,526
Effective search space: 59108462
Effective search space used: 59108462
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.1 bits)