Query psy5679
Match_columns 149
No_of_seqs 132 out of 1328
Neff 10.0
Searched_HMMs 46136
Date Fri Aug 16 23:49:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5679.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5679hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0910|consensus 99.9 7.5E-27 1.6E-31 149.8 11.4 102 47-149 47-150 (150)
2 PF00085 Thioredoxin: Thioredo 99.9 1.6E-24 3.4E-29 134.0 13.6 100 45-146 2-103 (103)
3 cd03006 PDI_a_EFP1_N PDIa fami 99.9 7.2E-25 1.6E-29 137.6 11.5 99 43-143 10-113 (113)
4 COG3118 Thioredoxin domain-con 99.9 4.9E-25 1.1E-29 155.3 10.8 104 44-149 25-132 (304)
5 cd02954 DIM1 Dim1 family; Dim1 99.9 6.5E-25 1.4E-29 136.9 10.1 96 50-146 2-110 (114)
6 PHA02278 thioredoxin-like prot 99.9 1.9E-24 4.2E-29 133.5 12.1 95 48-142 2-100 (103)
7 cd03003 PDI_a_ERdj5_N PDIa fam 99.9 1.3E-24 2.9E-29 134.4 10.9 97 44-142 3-100 (101)
8 cd02948 TRX_NDPK TRX domain, T 99.9 7.2E-24 1.6E-28 131.3 12.7 97 46-145 3-101 (102)
9 cd03004 PDI_a_ERdj5_C PDIa fam 99.9 2.5E-24 5.4E-29 133.7 10.6 98 44-143 3-104 (104)
10 cd03065 PDI_b_Calsequestrin_N 99.9 3.9E-24 8.5E-29 135.1 11.5 102 43-147 10-119 (120)
11 cd02985 TRX_CDSP32 TRX family, 99.9 1.2E-23 2.6E-28 130.5 12.7 95 49-145 2-101 (103)
12 KOG0907|consensus 99.9 1E-23 2.3E-28 130.5 12.0 87 58-146 19-105 (106)
13 PRK09381 trxA thioredoxin; Pro 99.9 2.4E-23 5.2E-28 130.4 13.3 104 43-148 4-109 (109)
14 PLN00410 U5 snRNP protein, DIM 99.9 1.6E-23 3.5E-28 135.2 11.7 104 44-148 5-121 (142)
15 cd02956 ybbN ybbN protein fami 99.9 1.9E-23 4.1E-28 128.0 11.4 92 52-144 2-96 (96)
16 cd02989 Phd_like_TxnDC9 Phosdu 99.9 5.6E-23 1.2E-27 129.4 13.4 88 44-132 6-93 (113)
17 PRK10996 thioredoxin 2; Provis 99.9 9.2E-23 2E-27 132.9 14.7 102 44-147 37-139 (139)
18 cd02996 PDI_a_ERp44 PDIa famil 99.9 2.7E-23 5.8E-28 130.0 10.8 98 44-143 3-108 (108)
19 cd02999 PDI_a_ERp44_like PDIa 99.9 2.9E-23 6.3E-28 128.0 10.4 91 51-143 7-100 (100)
20 cd02963 TRX_DnaJ TRX domain, D 99.9 3.9E-23 8.4E-28 129.8 11.1 96 50-146 11-111 (111)
21 PTZ00051 thioredoxin; Provisio 99.9 1.3E-22 2.8E-27 124.7 11.9 97 43-141 1-97 (98)
22 cd02994 PDI_a_TMX PDIa family, 99.9 1.2E-22 2.7E-27 125.5 11.8 97 44-145 3-101 (101)
23 cd03002 PDI_a_MPD1_like PDI fa 99.9 1.3E-22 2.9E-27 126.8 11.2 99 44-144 2-109 (109)
24 cd02965 HyaE HyaE family; HyaE 99.9 1.8E-22 3.9E-27 125.2 11.0 94 45-140 13-109 (111)
25 KOG0908|consensus 99.9 1.5E-22 3.2E-27 139.0 10.7 105 42-148 1-107 (288)
26 PTZ00443 Thioredoxin domain-co 99.9 5.7E-22 1.2E-26 137.7 13.4 104 43-148 31-140 (224)
27 cd03005 PDI_a_ERp46 PDIa famil 99.9 4E-22 8.7E-27 123.2 11.1 97 44-143 2-102 (102)
28 cd02997 PDI_a_PDIR PDIa family 99.9 6.3E-22 1.4E-26 122.7 11.5 98 44-143 2-104 (104)
29 cd03001 PDI_a_P5 PDIa family, 99.9 7.1E-22 1.5E-26 122.3 11.6 98 44-143 2-102 (103)
30 cd02957 Phd_like Phosducin (Ph 99.9 1.9E-21 4.1E-26 122.6 12.4 87 43-132 5-94 (113)
31 TIGR01068 thioredoxin thioredo 99.9 2.7E-21 5.9E-26 119.0 12.3 97 50-147 3-101 (101)
32 cd02984 TRX_PICOT TRX domain, 99.9 1.8E-21 3.9E-26 119.3 11.3 92 50-143 2-96 (97)
33 cd02950 TxlA TRX-like protein 99.9 1.9E-21 4.2E-26 127.0 12.1 99 50-148 10-111 (142)
34 cd02986 DLP Dim1 family, Dim1- 99.9 3.9E-21 8.5E-26 119.1 12.2 97 50-147 2-111 (114)
35 TIGR01126 pdi_dom protein disu 99.9 3.8E-21 8.3E-26 118.6 10.8 97 50-147 3-102 (102)
36 cd02962 TMX2 TMX2 family; comp 99.9 8.2E-21 1.8E-25 124.8 12.3 87 44-132 30-126 (152)
37 cd02995 PDI_a_PDI_a'_C PDIa fa 99.9 6.4E-21 1.4E-25 118.1 10.7 97 44-143 2-104 (104)
38 cd02949 TRX_NTR TRX domain, no 99.9 1.3E-20 2.7E-25 115.7 11.5 91 53-144 5-97 (97)
39 cd02953 DsbDgamma DsbD gamma f 99.9 3.6E-21 7.8E-26 119.5 8.7 94 51-144 2-104 (104)
40 cd02998 PDI_a_ERp38 PDIa famil 99.9 1E-20 2.2E-25 117.3 10.4 98 44-143 2-105 (105)
41 cd02987 Phd_like_Phd Phosducin 99.8 3.4E-20 7.5E-25 124.8 12.9 101 43-145 63-173 (175)
42 cd02975 PfPDO_like_N Pyrococcu 99.8 2.7E-20 5.8E-25 117.2 11.3 94 53-147 15-110 (113)
43 cd02993 PDI_a_APS_reductase PD 99.8 2.8E-20 6E-25 116.5 10.7 98 44-143 3-109 (109)
44 cd03000 PDI_a_TMX3 PDIa family 99.8 5.9E-20 1.3E-24 114.1 11.1 93 51-146 7-103 (104)
45 cd02961 PDI_a_family Protein D 99.8 3.2E-20 6.9E-25 113.8 9.6 95 47-143 3-101 (101)
46 TIGR01295 PedC_BrcD bacterioci 99.8 2.1E-19 4.6E-24 114.4 12.2 98 44-144 8-121 (122)
47 cd02947 TRX_family TRX family; 99.8 1.9E-19 4E-24 108.5 11.4 91 52-143 2-92 (93)
48 cd02988 Phd_like_VIAF Phosduci 99.8 9E-19 1.9E-23 119.4 12.6 98 43-145 83-190 (192)
49 KOG0190|consensus 99.8 1.6E-19 3.4E-24 136.3 9.5 103 43-147 26-132 (493)
50 PTZ00102 disulphide isomerase; 99.8 7.5E-19 1.6E-23 135.0 13.5 104 43-148 358-466 (477)
51 cd02951 SoxW SoxW family; SoxW 99.8 7.2E-19 1.6E-23 112.6 10.8 98 51-148 4-120 (125)
52 cd03007 PDI_a_ERp29_N PDIa fam 99.8 1.2E-18 2.6E-23 109.1 10.0 98 44-146 3-115 (116)
53 TIGR01130 ER_PDI_fam protein d 99.8 1.6E-18 3.5E-23 132.4 12.1 103 44-148 3-110 (462)
54 cd02992 PDI_a_QSOX PDIa family 99.8 2.6E-18 5.7E-23 108.3 10.6 82 43-126 2-90 (114)
55 PTZ00062 glutaredoxin; Provisi 99.8 3.1E-18 6.7E-23 117.3 11.5 91 48-148 4-95 (204)
56 PTZ00102 disulphide isomerase; 99.8 2.4E-18 5.2E-23 132.2 12.3 102 44-148 34-139 (477)
57 TIGR00424 APS_reduc 5'-adenyly 99.8 5E-18 1.1E-22 128.5 12.2 103 43-146 352-462 (463)
58 PLN02309 5'-adenylylsulfate re 99.8 7.5E-18 1.6E-22 127.5 11.9 102 43-146 346-456 (457)
59 cd02982 PDI_b'_family Protein 99.8 1.1E-17 2.3E-22 103.5 10.1 88 59-147 11-103 (103)
60 cd02952 TRP14_like Human TRX-r 99.8 1.3E-17 2.8E-22 105.2 9.9 95 47-142 6-117 (119)
61 TIGR00411 redox_disulf_1 small 99.7 3.8E-17 8.3E-22 97.0 10.2 80 63-147 2-82 (82)
62 TIGR02187 GlrX_arch Glutaredox 99.7 1.2E-16 2.7E-21 111.2 11.2 88 59-147 18-111 (215)
63 KOG0190|consensus 99.7 8.6E-17 1.9E-21 121.6 10.1 100 43-146 367-472 (493)
64 cd02959 ERp19 Endoplasmic reti 99.7 1.2E-16 2.6E-21 101.1 7.4 96 51-146 10-112 (117)
65 PRK00293 dipZ thiol:disulfide 99.7 3.8E-16 8.3E-21 122.1 11.7 105 43-147 453-570 (571)
66 TIGR01130 ER_PDI_fam protein d 99.7 4.7E-16 1E-20 118.9 12.0 102 43-148 347-455 (462)
67 PRK11509 hydrogenase-1 operon 99.7 2.8E-15 6.1E-20 95.6 11.7 98 51-149 25-126 (132)
68 KOG0912|consensus 99.7 2.2E-16 4.8E-21 111.6 6.9 97 51-148 4-107 (375)
69 PRK14018 trifunctional thiored 99.7 7E-16 1.5E-20 118.3 10.1 87 58-145 54-171 (521)
70 TIGR02187 GlrX_arch Glutaredox 99.7 1.7E-15 3.6E-20 105.5 11.1 84 58-145 130-214 (215)
71 TIGR00385 dsbE periplasmic pro 99.7 4E-15 8.6E-20 100.3 12.5 89 58-149 61-173 (173)
72 PF13098 Thioredoxin_2: Thiore 99.6 8.9E-16 1.9E-20 96.3 7.9 86 58-143 3-112 (112)
73 PRK15412 thiol:disulfide inter 99.6 3.8E-15 8.1E-20 101.5 10.9 89 58-148 66-177 (185)
74 PHA02125 thioredoxin-like prot 99.6 4.2E-15 9.2E-20 86.9 9.5 71 64-143 2-73 (75)
75 cd02955 SSP411 TRX domain, SSP 99.6 4.8E-15 1E-19 94.4 10.1 82 50-132 5-99 (124)
76 TIGR00412 redox_disulf_2 small 99.6 5.6E-15 1.2E-19 86.5 8.6 71 65-143 3-75 (76)
77 KOG4277|consensus 99.6 1.3E-15 2.9E-20 107.9 6.8 86 58-145 41-130 (468)
78 TIGR02738 TrbB type-F conjugat 99.6 1.5E-14 3.3E-19 95.3 11.1 89 58-147 48-153 (153)
79 cd02973 TRX_GRX_like Thioredox 99.6 6.4E-15 1.4E-19 84.2 7.8 62 63-127 2-63 (67)
80 PRK03147 thiol-disulfide oxido 99.6 3.2E-14 7E-19 95.7 12.2 88 59-146 60-171 (173)
81 TIGR02740 TraF-like TraF-like 99.6 2.9E-14 6.2E-19 102.2 11.6 88 59-147 165-264 (271)
82 cd03010 TlpA_like_DsbE TlpA-li 99.6 3.5E-14 7.5E-19 91.0 9.9 79 59-139 24-126 (127)
83 cd03026 AhpF_NTD_C TRX-GRX-lik 99.6 4.5E-14 9.8E-19 85.0 9.2 76 59-139 11-86 (89)
84 KOG0191|consensus 99.6 2.1E-14 4.5E-19 107.9 9.5 97 51-148 37-135 (383)
85 PRK13728 conjugal transfer pro 99.5 3.6E-13 7.7E-18 90.5 11.1 84 64-148 73-172 (181)
86 PF13905 Thioredoxin_8: Thiore 99.5 1.3E-13 2.8E-18 84.0 8.2 66 60-125 1-94 (95)
87 KOG1731|consensus 99.5 1.4E-14 3.1E-19 110.0 4.7 102 42-145 39-151 (606)
88 PLN02919 haloacid dehalogenase 99.5 1.9E-13 4.1E-18 113.3 11.4 89 59-148 419-537 (1057)
89 cd02958 UAS UAS family; UAS is 99.5 4E-13 8.6E-18 84.7 9.9 91 58-148 15-112 (114)
90 cd03008 TryX_like_RdCVF Trypar 99.5 1.9E-13 4.2E-18 89.2 8.5 70 59-128 24-127 (146)
91 cd03011 TlpA_like_ScsD_MtbDsbE 99.5 4.4E-13 9.5E-18 85.3 8.8 89 52-142 12-121 (123)
92 KOG0191|consensus 99.4 6.1E-13 1.3E-17 100.0 9.3 103 44-148 146-253 (383)
93 cd02964 TryX_like_family Trypa 99.4 6.5E-13 1.4E-17 85.7 8.1 70 59-128 16-114 (132)
94 cd03009 TryX_like_TryX_NRX Try 99.4 7.7E-13 1.7E-17 85.2 8.2 71 59-129 17-115 (131)
95 COG4232 Thiol:disulfide interc 99.4 1.5E-12 3.2E-17 99.9 9.6 103 45-147 457-568 (569)
96 cd03012 TlpA_like_DipZ_like Tl 99.4 2.6E-12 5.7E-17 82.2 8.8 75 59-133 22-125 (126)
97 PF08534 Redoxin: Redoxin; In 99.4 3.4E-12 7.3E-17 83.6 9.4 78 58-135 26-136 (146)
98 cd02966 TlpA_like_family TlpA- 99.4 3.6E-12 7.9E-17 79.3 8.6 74 59-132 18-116 (116)
99 PLN02399 phospholipid hydroper 99.4 7.7E-12 1.7E-16 87.8 10.9 90 59-148 98-235 (236)
100 PF02114 Phosducin: Phosducin; 99.4 1.1E-11 2.4E-16 88.3 11.2 101 43-145 126-236 (265)
101 cd02967 mauD Methylamine utili 99.4 4.1E-12 8.9E-17 79.7 8.0 69 59-127 20-109 (114)
102 PTZ00056 glutathione peroxidas 99.4 5.2E-12 1.1E-16 86.9 8.9 90 59-148 38-179 (199)
103 PLN02412 probable glutathione 99.3 1.4E-11 3.1E-16 82.6 9.8 90 59-148 28-165 (167)
104 cd02960 AGR Anterior Gradient 99.3 2.5E-11 5.5E-16 77.5 9.7 79 52-132 15-98 (130)
105 TIGR02661 MauD methylamine deh 99.3 4E-11 8.6E-16 82.0 10.8 86 58-146 72-178 (189)
106 smart00594 UAS UAS domain. 99.3 5.7E-11 1.2E-15 75.7 10.5 86 58-143 25-121 (122)
107 KOG1672|consensus 99.3 2.3E-11 5E-16 81.3 8.0 91 42-133 66-156 (211)
108 TIGR01626 ytfJ_HI0045 conserve 99.3 3.7E-11 7.9E-16 81.2 8.8 84 58-143 57-176 (184)
109 KOG0914|consensus 99.3 1.5E-11 3.3E-16 83.6 6.5 87 44-131 126-222 (265)
110 cd02969 PRX_like1 Peroxiredoxi 99.2 2E-10 4.3E-15 77.2 10.6 90 59-148 24-153 (171)
111 PF13192 Thioredoxin_3: Thiore 99.2 1.4E-10 3.1E-15 67.8 8.6 72 66-144 4-76 (76)
112 TIGR02196 GlrX_YruB Glutaredox 99.2 1.6E-10 3.5E-15 66.6 8.5 69 64-144 2-74 (74)
113 PF13899 Thioredoxin_7: Thiore 99.2 7.2E-11 1.6E-15 70.0 6.1 70 51-122 8-81 (82)
114 COG2143 Thioredoxin-related pr 99.2 5E-10 1.1E-14 72.5 10.2 95 51-145 33-147 (182)
115 COG0526 TrxA Thiol-disulfide i 99.2 1.8E-10 4E-15 71.4 8.2 85 60-145 32-122 (127)
116 KOG0913|consensus 99.2 1.2E-11 2.7E-16 84.8 2.8 97 44-145 26-124 (248)
117 KOG3414|consensus 99.2 9.2E-10 2E-14 68.6 10.4 102 44-146 5-119 (142)
118 PF14595 Thioredoxin_9: Thiore 99.2 2.6E-10 5.6E-15 73.2 8.3 85 58-145 39-127 (129)
119 TIGR02540 gpx7 putative glutat 99.2 4.3E-10 9.3E-15 74.3 9.1 89 59-147 21-153 (153)
120 PF13728 TraF: F plasmid trans 99.1 7.4E-10 1.6E-14 77.0 10.5 84 59-143 119-214 (215)
121 PTZ00256 glutathione peroxidas 99.1 6.9E-10 1.5E-14 75.5 10.1 90 59-148 39-182 (183)
122 cd00340 GSH_Peroxidase Glutath 99.1 2.5E-10 5.5E-15 75.4 7.2 83 59-142 21-151 (152)
123 PF06110 DUF953: Eukaryotic pr 99.1 1E-09 2.2E-14 69.1 8.4 78 48-125 3-100 (119)
124 PRK11200 grxA glutaredoxin 1; 99.1 2.3E-09 4.9E-14 64.0 9.3 78 63-148 2-84 (85)
125 cd03017 PRX_BCP Peroxiredoxin 99.1 1E-09 2.2E-14 71.2 8.2 85 59-143 22-139 (140)
126 TIGR02200 GlrX_actino Glutared 99.0 2.4E-09 5.1E-14 62.4 8.1 70 64-144 2-76 (77)
127 PF03190 Thioredox_DsbH: Prote 99.0 2E-09 4.3E-14 71.2 8.2 79 50-129 27-118 (163)
128 TIGR02180 GRX_euk Glutaredoxin 99.0 4.3E-09 9.3E-14 62.3 8.1 61 64-127 1-65 (84)
129 TIGR02739 TraF type-F conjugat 99.0 1E-08 2.2E-13 72.8 10.8 88 59-147 149-248 (256)
130 PF02966 DIM1: Mitosis protein 99.0 5.4E-08 1.2E-12 61.5 12.6 100 45-146 3-116 (133)
131 cd01659 TRX_superfamily Thiore 99.0 4.8E-09 1.1E-13 58.0 7.2 60 64-124 1-63 (69)
132 KOG2501|consensus 99.0 1.6E-09 3.4E-14 70.7 5.5 71 58-128 31-130 (157)
133 TIGR03143 AhpF_homolog putativ 99.0 9.4E-09 2E-13 80.9 10.8 87 52-143 467-554 (555)
134 PRK00522 tpx lipid hydroperoxi 98.9 1.2E-08 2.6E-13 68.4 9.6 73 59-131 43-148 (167)
135 PF07449 HyaE: Hydrogenase-1 e 98.9 1.8E-08 4E-13 62.1 9.5 93 44-138 11-106 (107)
136 PF00578 AhpC-TSA: AhpC/TSA fa 98.9 4.6E-09 1E-13 66.6 7.0 70 59-128 24-123 (124)
137 PRK13703 conjugal pilus assemb 98.9 2.4E-08 5.2E-13 70.5 10.9 88 59-147 142-241 (248)
138 cd03015 PRX_Typ2cys Peroxiredo 98.9 1.4E-08 3.1E-13 68.4 9.1 88 59-146 28-156 (173)
139 PF11009 DUF2847: Protein of u 98.9 4.7E-08 1E-12 60.0 10.3 95 45-139 2-104 (105)
140 cd03014 PRX_Atyp2cys Peroxired 98.9 1.3E-08 2.7E-13 66.4 8.4 85 59-143 25-141 (143)
141 PF13848 Thioredoxin_6: Thiore 98.9 8.3E-08 1.8E-12 64.9 12.0 102 42-145 77-184 (184)
142 TIGR02183 GRXA Glutaredoxin, G 98.9 2.6E-08 5.7E-13 59.5 8.4 75 64-146 2-81 (86)
143 KOG3425|consensus 98.9 3E-08 6.5E-13 61.5 8.7 75 49-123 11-104 (128)
144 PRK09437 bcp thioredoxin-depen 98.9 3.1E-08 6.8E-13 65.4 9.1 85 59-143 29-149 (154)
145 TIGR03137 AhpC peroxiredoxin. 98.8 4.5E-08 9.8E-13 66.8 9.4 87 59-145 30-154 (187)
146 PRK15317 alkyl hydroperoxide r 98.8 5.5E-08 1.2E-12 76.0 10.9 81 60-145 115-196 (517)
147 cd02970 PRX_like2 Peroxiredoxi 98.8 4E-08 8.6E-13 64.2 8.5 43 60-102 23-68 (149)
148 PRK10877 protein disulfide iso 98.8 7E-08 1.5E-12 68.0 9.4 82 58-146 105-230 (232)
149 cd03018 PRX_AhpE_like Peroxire 98.8 7.1E-08 1.5E-12 63.2 8.8 83 61-143 29-147 (149)
150 KOG0911|consensus 98.8 6.9E-09 1.5E-13 71.1 3.8 90 43-135 2-91 (227)
151 cd02976 NrdH NrdH-redoxin (Nrd 98.8 1.1E-07 2.3E-12 54.4 8.3 68 64-143 2-73 (73)
152 PRK10606 btuE putative glutath 98.7 7.6E-08 1.6E-12 65.4 7.9 41 59-100 24-66 (183)
153 cd02991 UAS_ETEA UAS family, E 98.7 4.6E-07 9.9E-12 57.1 10.9 90 58-148 15-114 (116)
154 TIGR03140 AhpF alkyl hydropero 98.7 2.8E-07 6.1E-12 72.0 11.0 82 60-146 117-198 (515)
155 PF00462 Glutaredoxin: Glutare 98.7 2.4E-07 5.2E-12 51.4 7.6 56 64-127 1-60 (60)
156 PF05768 DUF836: Glutaredoxin- 98.7 3.9E-07 8.4E-12 53.8 8.6 76 64-144 2-81 (81)
157 cd03419 GRX_GRXh_1_2_like Glut 98.7 3.8E-07 8.2E-12 53.7 8.5 70 64-144 2-75 (82)
158 PRK13190 putative peroxiredoxi 98.7 2.8E-07 6.2E-12 63.6 9.1 88 59-146 26-153 (202)
159 PRK10382 alkyl hydroperoxide r 98.6 4.8E-07 1E-11 61.7 9.8 88 59-146 30-155 (187)
160 cd02971 PRX_family Peroxiredox 98.6 2E-07 4.2E-12 60.4 7.5 76 59-134 21-130 (140)
161 cd03023 DsbA_Com1_like DsbA fa 98.6 3.3E-07 7.1E-12 60.0 8.6 40 59-98 4-43 (154)
162 PF01216 Calsequestrin: Calseq 98.6 7.4E-07 1.6E-11 65.0 10.9 103 43-148 35-145 (383)
163 cd02983 P5_C P5 family, C-term 98.6 2.6E-06 5.7E-11 54.8 11.4 104 44-148 4-116 (130)
164 TIGR02194 GlrX_NrdH Glutaredox 98.6 6.4E-07 1.4E-11 51.6 7.8 67 64-141 1-70 (72)
165 cd03020 DsbA_DsbC_DsbG DsbA fa 98.6 3.2E-07 6.9E-12 63.1 7.5 78 59-143 76-197 (197)
166 PRK15000 peroxidase; Provision 98.6 8.7E-07 1.9E-11 61.1 9.4 87 59-145 33-160 (200)
167 TIGR02190 GlrX-dom Glutaredoxi 98.6 9.9E-07 2.2E-11 51.8 8.4 72 59-143 5-78 (79)
168 cd02968 SCO SCO (an acronym fo 98.6 3.2E-07 7E-12 59.5 6.9 42 59-100 21-68 (142)
169 cd03072 PDI_b'_ERp44 PDIb' fam 98.6 1.6E-06 3.5E-11 54.2 9.5 99 46-148 3-109 (111)
170 PRK10329 glutaredoxin-like pro 98.5 4.6E-06 9.9E-11 49.2 9.7 71 64-146 3-76 (81)
171 cd02981 PDI_b_family Protein D 98.5 3.4E-06 7.3E-11 51.2 9.5 93 45-145 2-96 (97)
172 PHA03050 glutaredoxin; Provisi 98.5 1.6E-06 3.5E-11 54.0 7.9 73 52-128 5-81 (108)
173 PF13462 Thioredoxin_4: Thiore 98.5 4.7E-06 1E-10 55.1 10.7 83 58-145 10-162 (162)
174 PRK11657 dsbG disulfide isomer 98.4 2.5E-06 5.5E-11 60.8 9.3 84 59-144 116-249 (251)
175 cd03029 GRX_hybridPRX5 Glutare 98.4 4.1E-06 8.9E-11 48.1 8.6 66 64-143 3-71 (72)
176 PRK13189 peroxiredoxin; Provis 98.4 3.6E-06 7.7E-11 59.0 9.8 88 59-146 34-162 (222)
177 cd03016 PRX_1cys Peroxiredoxin 98.4 3.6E-06 7.7E-11 58.2 9.5 85 62-146 28-153 (203)
178 TIGR03143 AhpF_homolog putativ 98.4 4E-06 8.6E-11 66.2 10.9 103 44-147 348-454 (555)
179 KOG3170|consensus 98.4 4E-06 8.7E-11 56.8 9.1 99 43-145 92-199 (240)
180 PRK10954 periplasmic protein d 98.4 3.8E-06 8.2E-11 58.3 9.3 39 60-98 37-79 (207)
181 PRK13599 putative peroxiredoxi 98.4 4.2E-06 9.1E-11 58.3 9.6 88 59-146 27-155 (215)
182 PTZ00137 2-Cys peroxiredoxin; 98.4 5E-06 1.1E-10 59.4 9.8 88 59-146 97-224 (261)
183 TIGR02181 GRX_bact Glutaredoxi 98.4 3.4E-06 7.4E-11 49.3 7.6 56 64-127 1-60 (79)
184 cd02066 GRX_family Glutaredoxi 98.4 2.8E-06 6.1E-11 48.2 7.0 57 64-128 2-62 (72)
185 cd03073 PDI_b'_ERp72_ERp57 PDI 98.3 7.6E-06 1.6E-10 51.2 8.8 93 51-146 7-110 (111)
186 cd03418 GRX_GRXb_1_3_like Glut 98.3 5.1E-06 1.1E-10 48.0 7.6 56 64-127 2-62 (75)
187 cd03019 DsbA_DsbA DsbA family, 98.3 7.1E-06 1.5E-10 55.1 8.8 37 59-95 14-51 (178)
188 TIGR02189 GlrX-like_plant Glut 98.3 4E-06 8.7E-11 51.4 6.7 58 64-128 10-73 (99)
189 PRK13191 putative peroxiredoxi 98.3 1.9E-05 4.2E-10 55.1 10.7 88 59-146 32-160 (215)
190 cd03027 GRX_DEP Glutaredoxin ( 98.3 8E-06 1.7E-10 47.1 7.4 56 64-127 3-62 (73)
191 KOG3171|consensus 98.2 9.8E-06 2.1E-10 55.5 7.6 100 44-145 140-249 (273)
192 PTZ00253 tryparedoxin peroxida 98.2 1.2E-05 2.6E-10 55.4 8.3 87 59-145 35-162 (199)
193 COG0695 GrxC Glutaredoxin and 98.2 2.5E-05 5.5E-10 45.9 8.2 56 64-126 3-63 (80)
194 TIGR00365 monothiol glutaredox 98.1 4.1E-05 8.8E-10 46.7 8.2 68 51-127 3-78 (97)
195 PRK10638 glutaredoxin 3; Provi 98.1 3.1E-05 6.7E-10 45.8 6.9 56 64-127 4-63 (83)
196 cd03067 PDI_b_PDIR_N PDIb fami 98.0 7.6E-05 1.7E-09 45.2 7.8 100 44-144 3-109 (112)
197 KOG2603|consensus 98.0 7.8E-05 1.7E-09 53.9 8.8 104 40-146 38-165 (331)
198 COG1331 Highly conserved prote 98.0 3.4E-05 7.3E-10 61.1 7.5 79 49-128 32-123 (667)
199 cd03028 GRX_PICOT_like Glutare 97.9 0.00017 3.7E-09 43.3 8.7 50 70-127 21-74 (90)
200 cd02972 DsbA_family DsbA famil 97.9 8.8E-05 1.9E-09 44.3 6.5 57 64-120 1-89 (98)
201 PF00837 T4_deiodinase: Iodoth 97.8 0.00028 6.1E-09 49.5 8.3 56 44-100 84-143 (237)
202 PRK10824 glutaredoxin-4; Provi 97.7 0.00031 6.7E-09 44.1 7.3 69 51-128 6-82 (115)
203 PF07912 ERp29_N: ERp29, N-ter 97.7 0.0028 6.1E-08 39.9 11.2 97 44-146 6-118 (126)
204 cd03066 PDI_b_Calsequestrin_mi 97.7 0.0015 3.2E-08 40.1 10.0 95 44-146 2-100 (102)
205 KOG1752|consensus 97.6 0.00035 7.6E-09 43.1 6.4 68 52-127 6-78 (104)
206 PRK12759 bifunctional gluaredo 97.5 0.00039 8.4E-09 53.1 6.9 57 63-127 3-71 (410)
207 PTZ00062 glutaredoxin; Provisi 97.5 0.0011 2.3E-08 46.0 7.8 67 52-127 105-179 (204)
208 cd03069 PDI_b_ERp57 PDIb famil 97.4 0.0021 4.5E-08 39.6 8.2 94 44-146 2-103 (104)
209 PF01323 DSBA: DSBA-like thior 97.3 0.0032 7E-08 42.7 8.8 32 63-94 1-32 (193)
210 cd02974 AhpF_NTD_N Alkyl hydro 97.3 0.01 2.2E-07 36.0 9.9 86 50-147 7-94 (94)
211 PF13848 Thioredoxin_6: Thiore 97.3 0.0036 7.8E-08 42.1 8.7 66 77-147 7-75 (184)
212 COG1651 DsbG Protein-disulfide 97.3 0.0033 7.1E-08 44.6 8.7 37 106-147 207-243 (244)
213 PF13743 Thioredoxin_5: Thiore 97.2 0.0027 5.9E-08 42.9 7.2 31 66-96 2-33 (176)
214 cd03031 GRX_GRX_like Glutaredo 97.1 0.0071 1.5E-07 39.7 8.3 56 64-127 2-71 (147)
215 COG1225 Bcp Peroxiredoxin [Pos 97.0 0.011 2.4E-07 39.2 8.3 88 59-146 29-155 (157)
216 TIGR03140 AhpF alkyl hydropero 96.8 0.017 3.7E-07 45.5 10.0 87 50-147 7-95 (515)
217 PRK15317 alkyl hydroperoxide r 96.8 0.021 4.6E-07 45.0 10.1 86 50-147 7-94 (517)
218 KOG2640|consensus 96.6 0.0011 2.4E-08 48.0 1.9 94 52-147 66-162 (319)
219 cd03074 PDI_b'_Calsequestrin_C 96.6 0.064 1.4E-06 33.1 9.2 89 58-147 18-120 (120)
220 PF06764 DUF1223: Protein of u 96.5 0.075 1.6E-06 36.8 10.0 79 63-147 1-98 (202)
221 COG3019 Predicted metal-bindin 96.4 0.045 9.8E-07 35.3 7.9 73 62-145 26-102 (149)
222 cd03060 GST_N_Omega_like GST_N 96.3 0.027 5.9E-07 31.8 6.1 58 65-126 2-59 (71)
223 COG4545 Glutaredoxin-related p 96.2 0.016 3.5E-07 33.2 4.5 57 65-127 5-76 (85)
224 cd03068 PDI_b_ERp72 PDIb famil 96.1 0.16 3.5E-06 31.4 9.7 94 44-145 2-106 (107)
225 COG3634 AhpF Alkyl hydroperoxi 96.0 0.043 9.3E-07 41.2 7.2 81 59-144 115-195 (520)
226 cd03040 GST_N_mPGES2 GST_N fam 96.0 0.064 1.4E-06 30.7 6.6 73 64-147 2-76 (77)
227 PF13417 GST_N_3: Glutathione 95.7 0.18 3.8E-06 28.8 7.8 71 66-147 1-71 (75)
228 PF06491 Disulph_isomer: Disul 95.7 0.054 1.2E-06 34.5 5.6 100 44-147 18-132 (136)
229 cd02978 KaiB_like KaiB-like fa 95.6 0.063 1.4E-06 30.8 5.3 58 63-121 3-62 (72)
230 cd03059 GST_N_SspA GST_N famil 95.6 0.15 3.3E-06 28.6 7.1 52 65-119 2-53 (73)
231 cd03041 GST_N_2GST_N GST_N fam 95.5 0.23 5E-06 28.5 7.6 71 64-145 2-75 (77)
232 KOG2507|consensus 95.4 0.25 5.5E-06 37.8 9.2 90 58-147 16-111 (506)
233 COG0386 BtuE Glutathione perox 95.3 0.33 7.2E-06 32.0 8.5 91 58-149 23-162 (162)
234 cd03037 GST_N_GRX2 GST_N famil 95.2 0.11 2.4E-06 29.2 5.5 57 65-126 2-58 (71)
235 cd02977 ArsC_family Arsenate R 95.2 0.039 8.5E-07 33.9 3.9 77 64-145 1-85 (105)
236 KOG2792|consensus 94.9 0.13 2.8E-06 36.7 6.1 90 59-148 138-276 (280)
237 PHA03075 glutaredoxin-like pro 94.8 0.089 1.9E-06 32.9 4.6 36 61-99 2-37 (123)
238 COG2761 FrnE Predicted dithiol 94.7 0.088 1.9E-06 37.0 4.9 41 105-149 175-215 (225)
239 cd00570 GST_N_family Glutathio 94.6 0.19 4E-06 27.4 5.5 57 65-126 2-59 (71)
240 cd03013 PRX5_like Peroxiredoxi 94.5 0.097 2.1E-06 34.6 4.7 42 59-100 28-74 (155)
241 cd03051 GST_N_GTT2_like GST_N 94.4 0.1 2.2E-06 29.3 4.1 53 65-120 2-57 (74)
242 TIGR01617 arsC_related transcr 94.3 0.12 2.7E-06 32.4 4.6 33 65-102 2-34 (117)
243 cd02990 UAS_FAF1 UAS family, F 94.1 0.98 2.1E-05 29.3 11.0 91 58-148 19-134 (136)
244 COG1999 Uncharacterized protei 94.1 1.3 2.9E-05 30.8 10.3 91 58-148 65-205 (207)
245 PRK09301 circadian clock prote 93.9 0.21 4.5E-06 30.7 4.7 72 60-133 5-78 (103)
246 TIGR02654 circ_KaiB circadian 93.9 0.21 4.6E-06 29.7 4.7 71 62-134 4-76 (87)
247 PRK01655 spxA transcriptional 93.5 0.19 4.1E-06 32.3 4.5 34 64-102 2-35 (131)
248 cd03045 GST_N_Delta_Epsilon GS 93.5 0.21 4.6E-06 28.1 4.3 57 65-126 2-61 (74)
249 cd03036 ArsC_like Arsenate Red 93.5 0.16 3.4E-06 31.6 4.0 33 65-102 2-34 (111)
250 cd03055 GST_N_Omega GST_N fami 93.4 0.6 1.3E-05 27.6 6.3 54 64-120 19-72 (89)
251 TIGR02742 TrbC_Ftype type-F co 93.4 0.22 4.7E-06 32.0 4.5 41 104-144 61-112 (130)
252 cd03035 ArsC_Yffb Arsenate Red 92.5 0.29 6.3E-06 30.2 4.0 34 64-102 1-34 (105)
253 COG3531 Predicted protein-disu 92.4 0.33 7.2E-06 33.4 4.5 45 104-148 164-210 (212)
254 cd03032 ArsC_Spx Arsenate Redu 91.7 0.54 1.2E-05 29.4 4.7 34 64-102 2-35 (115)
255 PRK12559 transcriptional regul 91.7 0.53 1.1E-05 30.3 4.7 34 64-102 2-35 (131)
256 PF09673 TrbC_Ftype: Type-F co 91.5 2.3 4.9E-05 26.6 8.5 20 104-123 61-80 (113)
257 PF07689 KaiB: KaiB domain; I 91.4 0.087 1.9E-06 31.0 0.8 54 66-120 2-57 (82)
258 PF06053 DUF929: Domain of unk 91.2 1.1 2.3E-05 32.2 6.2 59 56-121 54-112 (249)
259 COG5429 Uncharacterized secret 90.7 1.2 2.7E-05 31.5 5.9 85 59-147 40-141 (261)
260 PF06953 ArsD: Arsenical resis 90.5 2.8 6.1E-05 26.7 7.1 63 77-145 28-100 (123)
261 cd03024 DsbA_FrnE DsbA family, 89.9 0.63 1.4E-05 31.7 4.1 36 104-143 165-200 (201)
262 PF04592 SelP_N: Selenoprotein 89.8 5.5 0.00012 28.3 8.6 43 58-100 24-71 (238)
263 cd03056 GST_N_4 GST_N family, 89.3 1 2.2E-05 25.1 4.1 57 65-126 2-61 (73)
264 KOG1651|consensus 89.0 3.9 8.4E-05 27.4 7.0 91 58-148 32-170 (171)
265 cd03052 GST_N_GDAP1 GST_N fami 88.8 2.9 6.3E-05 23.6 5.8 58 65-127 2-62 (73)
266 cd03025 DsbA_FrnE_like DsbA fa 88.8 0.7 1.5E-05 31.2 3.7 27 64-90 3-29 (193)
267 COG5494 Predicted thioredoxin/ 88.0 5.1 0.00011 28.0 7.3 74 64-145 13-86 (265)
268 PRK13344 spxA transcriptional 87.9 1.5 3.3E-05 28.2 4.6 34 64-102 2-35 (132)
269 KOG2244|consensus 87.7 0.88 1.9E-05 36.2 3.9 72 49-121 101-184 (786)
270 PF01216 Calsequestrin: Calseq 87.5 11 0.00023 28.6 11.3 106 41-148 248-369 (383)
271 COG0278 Glutaredoxin-related p 86.7 5.1 0.00011 24.5 6.0 73 51-128 6-83 (105)
272 cd03022 DsbA_HCCA_Iso DsbA fam 86.3 1.2 2.6E-05 30.0 3.7 35 104-143 157-191 (192)
273 PF02630 SCO1-SenC: SCO1/SenC; 86.2 2.1 4.5E-05 28.8 4.7 42 59-100 51-97 (174)
274 cd03053 GST_N_Phi GST_N family 84.5 3.8 8.3E-05 22.9 4.8 58 64-126 2-62 (76)
275 PRK13730 conjugal transfer pil 84.2 2.6 5.7E-05 29.2 4.4 40 104-144 152-191 (212)
276 PF09822 ABC_transp_aux: ABC-t 84.1 13 0.00029 26.7 11.1 56 58-114 22-88 (271)
277 KOG4277|consensus 84.0 6.3 0.00014 29.2 6.5 83 53-145 146-229 (468)
278 PF04134 DUF393: Protein of un 83.2 1.8 3.9E-05 26.7 3.2 58 66-125 1-61 (114)
279 cd03049 GST_N_3 GST_N family, 82.3 5.7 0.00012 22.1 4.8 60 65-126 2-61 (73)
280 KOG1422|consensus 82.2 15 0.00032 25.8 7.6 65 71-147 20-85 (221)
281 PRK09481 sspA stringent starva 81.7 8.2 0.00018 26.5 6.3 63 59-126 6-68 (211)
282 cd03061 GST_N_CLIC GST_N famil 81.5 9.1 0.0002 22.9 6.8 66 70-146 20-85 (91)
283 COG0821 gcpE 1-hydroxy-2-methy 80.4 8.3 0.00018 29.0 6.1 78 71-148 263-352 (361)
284 PF13778 DUF4174: Domain of un 80.2 12 0.00026 23.5 8.6 83 64-146 13-111 (118)
285 PRK00366 ispG 4-hydroxy-3-meth 80.0 7.8 0.00017 29.3 5.9 76 72-147 271-357 (360)
286 PF11287 DUF3088: Protein of u 79.8 3.2 6.8E-05 25.9 3.3 50 72-121 24-75 (112)
287 cd03033 ArsC_15kD Arsenate Red 77.8 3.7 8.1E-05 25.6 3.2 33 64-101 2-34 (113)
288 KOG0324|consensus 77.2 1.1 2.4E-05 31.2 0.8 54 65-119 78-133 (214)
289 PF07315 DUF1462: Protein of u 76.5 14 0.0003 22.2 8.5 73 67-143 3-92 (93)
290 KOG0912|consensus 76.2 12 0.00027 27.8 5.9 95 44-146 212-318 (375)
291 COG3411 Ferredoxin [Energy pro 76.2 8.9 0.00019 21.4 4.0 31 114-148 16-46 (64)
292 COG0450 AhpC Peroxiredoxin [Po 74.6 25 0.00055 24.3 7.9 86 60-146 33-160 (194)
293 TIGR00014 arsC arsenate reduct 72.7 8.6 0.00019 23.9 3.9 33 65-102 2-34 (114)
294 COG2761 FrnE Predicted dithiol 71.9 9.4 0.0002 27.0 4.3 29 63-91 7-35 (225)
295 cd03058 GST_N_Tau GST_N family 71.6 15 0.00033 20.4 7.4 70 65-145 2-72 (74)
296 PF07511 DUF1525: Protein of u 70.0 15 0.00033 23.1 4.5 36 107-146 76-111 (114)
297 cd03050 GST_N_Theta GST_N fami 69.9 16 0.00034 20.4 4.4 57 65-126 2-61 (76)
298 PF00255 GSHPx: Glutathione pe 69.7 14 0.0003 22.9 4.3 44 58-102 19-64 (108)
299 cd03034 ArsC_ArsC Arsenate Red 69.6 11 0.00024 23.3 3.9 33 65-102 2-34 (112)
300 COG3011 Predicted thiol-disulf 66.4 33 0.00072 22.3 6.4 67 59-127 5-73 (137)
301 TIGR03757 conj_TIGR03757 integ 65.4 19 0.00042 22.5 4.3 33 107-143 77-109 (113)
302 PF04551 GcpE: GcpE protein; 64.9 8.6 0.00019 29.1 3.1 75 72-146 271-358 (359)
303 cd03025 DsbA_FrnE_like DsbA fa 64.9 9.7 0.00021 25.6 3.3 22 104-125 159-180 (193)
304 PF10865 DUF2703: Domain of un 64.0 13 0.00028 23.6 3.4 53 70-128 13-73 (120)
305 PRK10387 glutaredoxin 2; Provi 62.6 46 0.00099 22.6 6.9 56 66-126 3-58 (210)
306 PF08806 Sep15_SelM: Sep15/Sel 62.2 17 0.00037 21.1 3.5 35 113-147 40-76 (78)
307 cd03022 DsbA_HCCA_Iso DsbA fam 62.1 17 0.00038 24.2 4.1 32 66-97 3-35 (192)
308 KOG1364|consensus 61.5 15 0.00033 27.7 3.8 53 94-147 135-189 (356)
309 PF09695 YtfJ_HI0045: Bacteria 61.1 47 0.001 22.2 9.5 30 117-146 127-157 (160)
310 COG1393 ArsC Arsenate reductas 60.5 14 0.0003 23.3 3.1 26 64-89 3-28 (117)
311 PF05176 ATP-synt_10: ATP10 pr 59.0 66 0.0014 23.2 6.8 40 105-144 205-247 (252)
312 COG2101 SPT15 TATA-box binding 58.7 48 0.001 22.6 5.5 30 117-148 148-177 (185)
313 cd03030 GRX_SH3BGR Glutaredoxi 56.8 41 0.00088 20.1 6.4 34 91-127 30-71 (92)
314 PF05988 DUF899: Bacterial pro 56.3 68 0.0015 22.6 7.1 84 48-131 55-173 (211)
315 cd03062 TRX_Fd_Sucrase TRX-lik 56.0 30 0.00065 20.8 4.0 32 113-148 51-84 (97)
316 cd03054 GST_N_Metaxin GST_N fa 55.9 33 0.00071 18.8 7.2 45 70-126 14-58 (72)
317 KOG3029|consensus 55.2 85 0.0018 23.3 7.6 57 60-125 87-145 (370)
318 KOG0868|consensus 55.2 6.4 0.00014 26.9 1.0 66 59-127 3-68 (217)
319 TIGR02182 GRXB Glutaredoxin, G 54.7 67 0.0015 22.0 6.9 55 66-125 2-56 (209)
320 PF14424 Toxin-deaminase: The 54.6 56 0.0012 21.1 5.8 26 70-98 106-131 (133)
321 cd03024 DsbA_FrnE DsbA family, 54.5 26 0.00057 23.6 4.0 25 66-90 3-27 (201)
322 cd03044 GST_N_EF1Bgamma GST_N 54.2 37 0.0008 18.9 4.7 56 66-126 3-61 (75)
323 COG3531 Predicted protein-disu 53.2 16 0.00035 25.4 2.6 27 63-89 3-29 (212)
324 PF00352 TBP: Transcription fa 53.2 26 0.00056 20.5 3.3 60 81-147 20-79 (86)
325 cd03021 DsbA_GSTK DsbA family, 51.4 26 0.00056 24.1 3.6 37 106-143 171-208 (209)
326 PRK10853 putative reductase; P 50.9 23 0.0005 22.2 3.0 32 64-100 2-33 (118)
327 PF03227 GILT: Gamma interfero 50.6 46 0.00099 20.4 4.3 21 64-84 3-24 (108)
328 TIGR01616 nitro_assoc nitrogen 49.6 30 0.00066 22.0 3.4 23 63-85 2-24 (126)
329 PF07700 HNOB: Heme NO binding 49.5 44 0.00095 22.3 4.4 41 60-100 127-169 (171)
330 KOG0911|consensus 49.2 37 0.0008 24.1 4.0 53 69-127 151-205 (227)
331 cd03076 GST_N_Pi GST_N family, 48.1 47 0.001 18.3 5.0 57 65-126 3-59 (73)
332 PRK10026 arsenate reductase; P 48.0 30 0.00064 22.6 3.2 32 64-100 4-35 (141)
333 COG2077 Tpx Peroxiredoxin [Pos 48.0 58 0.0013 21.7 4.5 55 59-113 44-100 (158)
334 TIGR00612 ispG_gcpE 1-hydroxy- 47.2 38 0.00082 25.6 4.0 50 92-145 290-343 (346)
335 PRK11752 putative S-transferas 47.0 82 0.0018 22.6 5.7 55 66-120 46-106 (264)
336 PF11072 DUF2859: Protein of u 46.4 21 0.00045 23.4 2.3 18 103-120 120-137 (142)
337 TIGR03765 ICE_PFL_4695 integra 45.9 18 0.00039 22.3 1.8 37 80-120 63-99 (105)
338 cd03038 GST_N_etherase_LigE GS 45.8 56 0.0012 18.5 5.3 66 69-145 13-81 (84)
339 cd03042 GST_N_Zeta GST_N famil 45.2 51 0.0011 17.8 5.8 55 66-126 3-61 (73)
340 TIGR02743 TraW type-F conjugat 44.3 36 0.00079 23.7 3.3 26 100-127 172-197 (202)
341 cd03021 DsbA_GSTK DsbA family, 43.5 73 0.0016 21.9 4.8 36 63-98 2-38 (209)
342 COG4837 Uncharacterized protei 43.2 75 0.0016 19.3 8.6 79 63-145 6-101 (106)
343 PLN02473 glutathione S-transfe 42.1 1.1E+02 0.0024 20.8 6.3 59 63-126 2-63 (214)
344 PRK15113 glutathione S-transfe 42.0 92 0.002 21.3 5.2 60 61-125 3-67 (214)
345 PF03960 ArsC: ArsC family; I 41.5 29 0.00064 21.2 2.4 31 67-102 1-31 (110)
346 PRK13669 hypothetical protein; 41.3 73 0.0016 18.6 5.1 54 82-148 20-73 (78)
347 PLN02817 glutathione dehydroge 41.2 88 0.0019 22.6 5.1 47 71-120 72-118 (265)
348 PF14639 YqgF: Holliday-juncti 40.3 55 0.0012 21.6 3.6 48 50-98 52-105 (150)
349 TIGR00862 O-ClC intracellular 40.3 1.3E+02 0.0029 21.3 7.9 52 70-126 17-68 (236)
350 PF05679 CHGN: Chondroitin N-a 40.3 1.9E+02 0.0042 23.1 7.2 63 60-122 281-348 (499)
351 PF04908 SH3BGR: SH3-binding, 39.6 42 0.00092 20.5 2.8 36 66-102 5-42 (99)
352 PLN02378 glutathione S-transfe 39.5 93 0.002 21.4 4.9 50 71-125 19-68 (213)
353 TIGR03439 methyl_EasF probable 39.5 1E+02 0.0022 23.1 5.3 40 60-102 76-115 (319)
354 COG2101 SPT15 TATA-box binding 37.6 67 0.0015 21.9 3.7 30 117-148 55-84 (185)
355 cd03039 GST_N_Sigma_like GST_N 37.5 71 0.0015 17.4 3.4 56 66-126 3-59 (72)
356 cd02067 B12-binding B12 bindin 37.4 98 0.0021 18.9 4.8 41 50-90 39-79 (119)
357 COG2999 GrxB Glutaredoxin 2 [P 37.1 47 0.001 22.8 2.9 49 70-125 7-57 (215)
358 PF02310 B12-binding: B12 bind 36.7 99 0.0021 18.8 4.4 52 51-102 41-94 (121)
359 KOG1731|consensus 34.0 58 0.0013 26.5 3.4 57 90-148 214-270 (606)
360 PRK13738 conjugal transfer pil 33.6 69 0.0015 22.5 3.4 28 100-128 170-198 (209)
361 cd00652 TBP_TLF TATA box bindi 33.3 1E+02 0.0022 20.9 4.1 29 117-147 141-169 (174)
362 cd04518 TBP_archaea archaeal T 33.0 1.1E+02 0.0023 20.8 4.1 29 117-147 140-168 (174)
363 KOG0855|consensus 33.0 1.6E+02 0.0035 20.1 6.2 56 58-116 88-169 (211)
364 PRK01233 glyS glycyl-tRNA synt 32.6 1.9E+02 0.0041 24.4 6.2 66 44-120 194-259 (682)
365 PRK08351 DNA-directed RNA poly 32.2 49 0.0011 18.3 2.0 43 69-120 15-57 (61)
366 cd03071 PDI_b'_NRX PDIb' famil 31.9 1.3E+02 0.0029 18.8 7.0 86 59-147 13-115 (116)
367 cd03070 PDI_b_ERp44 PDIb famil 31.9 1.2E+02 0.0026 18.2 6.9 85 45-138 2-89 (91)
368 COG4312 Uncharacterized protei 31.7 1.5E+02 0.0032 21.2 4.7 66 33-98 46-119 (247)
369 PRK00394 transcription factor; 31.4 1.2E+02 0.0025 20.7 4.2 29 117-147 141-169 (179)
370 cd04516 TBP_eukaryotes eukaryo 30.9 1.2E+02 0.0025 20.6 4.1 29 117-147 140-168 (174)
371 cd03527 RuBisCO_small Ribulose 30.8 1.2E+02 0.0026 18.5 3.8 27 76-102 60-88 (99)
372 PF09936 Methyltrn_RNA_4: SAM- 30.0 61 0.0013 22.3 2.6 23 49-71 120-143 (185)
373 PLN00062 TATA-box-binding prot 29.6 1.3E+02 0.0029 20.4 4.2 29 117-147 140-168 (179)
374 cd04517 TLF TBP-like factors ( 29.4 1.4E+02 0.003 20.3 4.2 30 116-147 48-77 (174)
375 TIGR03759 conj_TIGR03759 integ 29.3 2E+02 0.0044 20.1 6.6 37 59-98 107-143 (200)
376 PF02484 Rhabdo_NV: Rhabdoviru 29.2 81 0.0018 18.9 2.7 38 109-146 18-55 (111)
377 KOG3445|consensus 28.7 1.7E+02 0.0037 19.1 7.6 69 66-146 28-101 (145)
378 PRK13817 ribosome-binding fact 28.1 1.1E+02 0.0024 19.3 3.4 22 104-125 74-95 (119)
379 PF08599 Nbs1_C: DNA damage re 27.8 52 0.0011 18.3 1.6 33 111-147 14-46 (65)
380 PRK05463 hypothetical protein; 27.8 1.2E+02 0.0027 22.1 3.9 53 77-130 42-99 (262)
381 PHA02513 V1 structural protein 27.6 32 0.0007 21.5 0.9 26 66-91 33-58 (135)
382 cd03048 GST_N_Ure2p_like GST_N 27.5 1.2E+02 0.0026 16.9 7.2 71 67-148 4-80 (81)
383 PF00708 Acylphosphatase: Acyl 27.4 1.2E+02 0.0026 17.7 3.4 39 104-146 24-62 (91)
384 PF15379 DUF4606: Domain of un 26.7 71 0.0015 19.7 2.2 17 69-85 31-47 (104)
385 cd07973 Spt4 Transcription elo 26.6 66 0.0014 19.6 2.1 52 67-121 18-77 (98)
386 COG4752 Uncharacterized protei 26.5 91 0.002 20.8 2.8 25 50-74 122-147 (190)
387 KOG0852|consensus 26.1 2.3E+02 0.0049 19.6 6.5 41 104-145 107-159 (196)
388 COG4604 CeuD ABC-type enteroch 25.3 2.3E+02 0.005 20.2 4.7 48 72-128 168-216 (252)
389 PRK14429 acylphosphatase; Prov 25.3 1.5E+02 0.0033 17.5 3.5 37 105-145 23-59 (90)
390 TIGR01287 nifH nitrogenase iro 25.1 1.1E+02 0.0024 21.9 3.4 63 47-112 208-270 (275)
391 cd05863 Ig2_VEGFR-3 Second imm 23.7 78 0.0017 17.4 2.0 14 115-128 12-25 (67)
392 PF11317 DUF3119: Protein of u 23.6 2E+02 0.0044 18.2 4.0 35 113-147 81-115 (116)
393 cd03047 GST_N_2 GST_N family, 23.6 1.4E+02 0.003 16.2 4.3 56 65-125 2-60 (73)
394 PF02042 RWP-RK: RWP-RK domain 22.6 57 0.0012 17.4 1.2 18 99-117 29-46 (52)
395 TIGR00211 glyS glycyl-tRNA syn 22.5 3E+02 0.0066 23.2 5.7 64 44-120 196-261 (691)
396 KOG4079|consensus 22.5 1.1E+02 0.0024 20.0 2.6 28 122-149 82-109 (169)
397 PF02092 tRNA_synt_2f: Glycyl- 22.4 2.7E+02 0.0058 22.8 5.3 42 44-90 191-232 (548)
398 PTZ00151 translationally contr 22.3 1.3E+02 0.0028 20.5 3.0 42 83-125 123-167 (172)
399 PRK14451 acylphosphatase; Prov 22.2 1.7E+02 0.0036 17.3 3.3 38 105-146 24-61 (89)
400 KOG0867|consensus 22.2 1.6E+02 0.0036 20.6 3.8 54 64-120 3-59 (226)
401 PF07293 DUF1450: Protein of u 21.9 1.8E+02 0.0039 16.9 5.7 57 79-148 17-73 (78)
402 PRK14449 acylphosphatase; Prov 21.6 1.9E+02 0.0041 17.1 4.2 38 105-146 24-61 (90)
403 TIGR00595 priA primosomal prot 21.5 97 0.0021 24.8 2.7 32 71-102 255-295 (505)
404 cd05855 Ig_TrkB_d5 Fifth domai 21.4 76 0.0017 18.2 1.7 14 115-128 12-25 (79)
405 PRK14430 acylphosphatase; Prov 21.2 2E+02 0.0043 17.1 3.6 39 104-146 24-62 (92)
406 COG0295 Cdd Cytidine deaminase 21.1 2E+02 0.0044 18.7 3.6 7 72-78 88-94 (134)
407 PRK14438 acylphosphatase; Prov 20.6 2E+02 0.0044 17.0 3.5 38 105-146 24-61 (91)
No 1
>KOG0910|consensus
Probab=99.95 E-value=7.5e-27 Score=149.85 Aligned_cols=102 Identities=29% Similarity=0.611 Sum_probs=96.6
Q ss_pred ecchhhHHHHH-cCCCCEEEEEeCCCChhHHhhhHHHHHHHhhcCC-ceEEEEEecCCchhhhHhcCCCcccEEEEEeCC
Q psy5679 47 IEKIDDFKQTI-RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENGGGEIAREFEVQAVPTVIGFRNG 124 (149)
Q Consensus 47 i~~~~~~~~~~-~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~~~~~~~~~~i~~~Pt~~~~~~g 124 (149)
+-+.++|++.+ .++.||+|+|||+||++|+.+.|.++++..++.+ ++|+++|.|++ .+++.+|+|..+||+++|+||
T Consensus 47 ~~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~-~ela~~Y~I~avPtvlvfknG 125 (150)
T KOG0910|consen 47 VQSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEH-PELAEDYEISAVPTVLVFKNG 125 (150)
T ss_pred ccCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccc-cchHhhcceeeeeEEEEEECC
Confidence 33468999988 9999999999999999999999999999999988 99999999999 999999999999999999999
Q ss_pred eeeeeeeCCCCHHHHHHHHHHHhcC
Q psy5679 125 DPVDTVVGNADQDVIQTLVSKLSQK 149 (149)
Q Consensus 125 ~~~~~~~g~~~~~~l~~~i~~~~~k 149 (149)
+...++.|..+.+.|.++|+++++.
T Consensus 126 e~~d~~vG~~~~~~l~~~i~k~l~~ 150 (150)
T KOG0910|consen 126 EKVDRFVGAVPKEQLRSLIKKFLKL 150 (150)
T ss_pred EEeeeecccCCHHHHHHHHHHHhcC
Confidence 9999999999999999999998763
No 2
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.93 E-value=1.6e-24 Score=134.02 Aligned_cols=100 Identities=26% Similarity=0.648 Sum_probs=93.8
Q ss_pred EEecchhhHHHHHc-CCCCEEEEEeCCCChhHHhhhHHHHHHHhhcCC-ceEEEEEecCCchhhhHhcCCCcccEEEEEe
Q psy5679 45 LIIEKIDDFKQTIR-GRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENGGGEIAREFEVQAVPTVIGFR 122 (149)
Q Consensus 45 ~~i~~~~~~~~~~~-~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~~~~~~~~~~i~~~Pt~~~~~ 122 (149)
..+++ ++|++.+. .+++++|+||++||++|+.+.|.++++++.+++ +.|+.+|++++ +.++++|+|.++|++++++
T Consensus 2 ~~lt~-~~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~-~~l~~~~~v~~~Pt~~~~~ 79 (103)
T PF00085_consen 2 IVLTD-ENFEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDEN-KELCKKYGVKSVPTIIFFK 79 (103)
T ss_dssp EEEST-TTHHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTS-HHHHHHTTCSSSSEEEEEE
T ss_pred EECCH-HHHHHHHHccCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhcc-chhhhccCCCCCCEEEEEE
Confidence 45664 99999995 499999999999999999999999999999995 99999999999 9999999999999999999
Q ss_pred CCeeeeeeeCCCCHHHHHHHHHHH
Q psy5679 123 NGDPVDTVVGNADQDVIQTLVSKL 146 (149)
Q Consensus 123 ~g~~~~~~~g~~~~~~l~~~i~~~ 146 (149)
+|+...++.|..+.+.|.+||+++
T Consensus 80 ~g~~~~~~~g~~~~~~l~~~i~~~ 103 (103)
T PF00085_consen 80 NGKEVKRYNGPRNAESLIEFIEKH 103 (103)
T ss_dssp TTEEEEEEESSSSHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCHHHHHHHHHcC
Confidence 999999999988999999999874
No 3
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.93 E-value=7.2e-25 Score=137.55 Aligned_cols=99 Identities=14% Similarity=0.115 Sum_probs=90.9
Q ss_pred eEEEecchhhHHHH---HcCCCCEEEEEeCCCChhHHhhhHHHHHHHhhcCC-ceEEEEEecCCchhhh-HhcCCCcccE
Q psy5679 43 AYLIIEKIDDFKQT---IRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENGGGEIA-REFEVQAVPT 117 (149)
Q Consensus 43 ~v~~i~~~~~~~~~---~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~~~~~~-~~~~i~~~Pt 117 (149)
.+.++++ ++|.+. +..+++++|+||++||++|+.+.|.++++++.+++ +.|++||++++ .+++ ++|+|.++||
T Consensus 10 ~v~~l~~-~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~-~~l~~~~~~I~~~PT 87 (113)
T cd03006 10 PVLDFYK-GQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWP-QGKCRKQKHFFYFPV 87 (113)
T ss_pred CeEEech-hhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCC-hHHHHHhcCCcccCE
Confidence 3888886 899987 38999999999999999999999999999999988 99999999999 8898 5899999999
Q ss_pred EEEEeCCeeeeeeeCCCCHHHHHHHH
Q psy5679 118 VIGFRNGDPVDTVVGNADQDVIQTLV 143 (149)
Q Consensus 118 ~~~~~~g~~~~~~~g~~~~~~l~~~i 143 (149)
+++|++|+....+.|..+.+.|..|+
T Consensus 88 l~lf~~g~~~~~y~G~~~~~~i~~~~ 113 (113)
T cd03006 88 IHLYYRSRGPIEYKGPMRAPYMEKFV 113 (113)
T ss_pred EEEEECCccceEEeCCCCHHHHHhhC
Confidence 99999999888999999999988764
No 4
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=4.9e-25 Score=155.25 Aligned_cols=104 Identities=30% Similarity=0.605 Sum_probs=98.0
Q ss_pred EEEecchhhHHHHH---cCCCCEEEEEeCCCChhHHhhhHHHHHHHhhcCC-ceEEEEEecCCchhhhHhcCCCcccEEE
Q psy5679 44 YLIIEKIDDFKQTI---RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENGGGEIAREFEVQAVPTVI 119 (149)
Q Consensus 44 v~~i~~~~~~~~~~---~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~~~~~~~~~~i~~~Pt~~ 119 (149)
+.++++ .+|.+.+ +..+||+|+||+|||++|+++.|.+++++..|++ +.+++||||.+ +.++.+|||+++|+++
T Consensus 25 I~dvT~-anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~-p~vAaqfgiqsIPtV~ 102 (304)
T COG3118 25 IKDVTE-ANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAE-PMVAAQFGVQSIPTVY 102 (304)
T ss_pred ceechH-hHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcc-hhHHHHhCcCcCCeEE
Confidence 788886 8998888 5677999999999999999999999999999999 99999999999 9999999999999999
Q ss_pred EEeCCeeeeeeeCCCCHHHHHHHHHHHhcC
Q psy5679 120 GFRNGDPVDTVVGNADQDVIQTLVSKLSQK 149 (149)
Q Consensus 120 ~~~~g~~~~~~~g~~~~~~l~~~i~~~~~k 149 (149)
.|++|+++..+.|..+.+.|+.||.+++.+
T Consensus 103 af~dGqpVdgF~G~qPesqlr~~ld~~~~~ 132 (304)
T COG3118 103 AFKDGQPVDGFQGAQPESQLRQFLDKVLPA 132 (304)
T ss_pred EeeCCcCccccCCCCcHHHHHHHHHHhcCh
Confidence 999999999999999999999999998753
No 5
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.92 E-value=6.5e-25 Score=136.88 Aligned_cols=96 Identities=16% Similarity=0.264 Sum_probs=83.7
Q ss_pred hhhHHHHH--cCCCCEEEEEeCCCChhHHhhhHHHHHHHhhcCC-ceEEEEEecCCchhhhHhcCCCcccEEEEEeCCee
Q psy5679 50 IDDFKQTI--RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENGGGEIAREFEVQAVPTVIGFRNGDP 126 (149)
Q Consensus 50 ~~~~~~~~--~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~~~~~~~~~~i~~~Pt~~~~~~g~~ 126 (149)
.++|++.+ ..+++++|.||++||++|+.+.|.+++++.++++ +.|++||+|++ ++++++|+|.++||+++|++|+.
T Consensus 2 ~~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~-~~la~~~~V~~iPTf~~fk~G~~ 80 (114)
T cd02954 2 GWAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEV-PDFNKMYELYDPPTVMFFFRNKH 80 (114)
T ss_pred HHHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCC-HHHHHHcCCCCCCEEEEEECCEE
Confidence 46788888 3688999999999999999999999999999998 89999999999 99999999999999999999999
Q ss_pred eeeeeCCC----------CHHHHHHHHHHH
Q psy5679 127 VDTVVGNA----------DQDVIQTLVSKL 146 (149)
Q Consensus 127 ~~~~~g~~----------~~~~l~~~i~~~ 146 (149)
+.+..|.. +.+++.+.+..+
T Consensus 81 v~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ 110 (114)
T cd02954 81 MKIDLGTGNNNKINWVFEDKQEFIDIIETI 110 (114)
T ss_pred EEEEcCCCCCceEEEecCcHHHHHHHHHHH
Confidence 98887743 445555555443
No 6
>PHA02278 thioredoxin-like protein
Probab=99.92 E-value=1.9e-24 Score=133.54 Aligned_cols=95 Identities=20% Similarity=0.435 Sum_probs=85.4
Q ss_pred cchhhHHHHHcCCCCEEEEEeCCCChhHHhhhHHHHHHHhhcCC-ceEEEEEecCC---chhhhHhcCCCcccEEEEEeC
Q psy5679 48 EKIDDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENG---GGEIAREFEVQAVPTVIGFRN 123 (149)
Q Consensus 48 ~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~---~~~~~~~~~i~~~Pt~~~~~~ 123 (149)
++.++|++.+.++++++|+||++||++|+.+.|.++++++.+.. +.|+.+|++.+ .++++++|+|.++||+++|++
T Consensus 2 ~~~~~~~~~i~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~ 81 (103)
T PHA02278 2 NSLVDLNTAIRQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKD 81 (103)
T ss_pred CCHHHHHHHHhCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEEEC
Confidence 45789999998999999999999999999999999999988544 78999999975 147999999999999999999
Q ss_pred CeeeeeeeCCCCHHHHHHH
Q psy5679 124 GDPVDTVVGNADQDVIQTL 142 (149)
Q Consensus 124 g~~~~~~~g~~~~~~l~~~ 142 (149)
|+.+.+..|..+.+++.++
T Consensus 82 G~~v~~~~G~~~~~~l~~~ 100 (103)
T PHA02278 82 GQLVKKYEDQVTPMQLQEL 100 (103)
T ss_pred CEEEEEEeCCCCHHHHHhh
Confidence 9999999998888888775
No 7
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.92 E-value=1.3e-24 Score=134.35 Aligned_cols=97 Identities=16% Similarity=0.428 Sum_probs=90.0
Q ss_pred EEEecchhhHHHHHcCCCCEEEEEeCCCChhHHhhhHHHHHHHhhcCC-ceEEEEEecCCchhhhHhcCCCcccEEEEEe
Q psy5679 44 YLIIEKIDDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENGGGEIAREFEVQAVPTVIGFR 122 (149)
Q Consensus 44 v~~i~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~~~~~~~~~~i~~~Pt~~~~~ 122 (149)
++.++ .++|++.+..+++++|+||++||++|+.+.|.++++++.+++ +.|+.+|++++ +.++++++|+++||+++|+
T Consensus 3 ~~~l~-~~~f~~~v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~-~~~~~~~~v~~~Pt~~~~~ 80 (101)
T cd03003 3 IVTLD-RGDFDAAVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDD-RMLCRSQGVNSYPSLYVFP 80 (101)
T ss_pred eEEcC-HhhHHHHhcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCcc-HHHHHHcCCCccCEEEEEc
Confidence 56776 489999997779999999999999999999999999999987 89999999999 9999999999999999999
Q ss_pred CCeeeeeeeCCCCHHHHHHH
Q psy5679 123 NGDPVDTVVGNADQDVIQTL 142 (149)
Q Consensus 123 ~g~~~~~~~g~~~~~~l~~~ 142 (149)
+|+.+..+.|..+.+.|.+|
T Consensus 81 ~g~~~~~~~G~~~~~~l~~f 100 (101)
T cd03003 81 SGMNPEKYYGDRSKESLVKF 100 (101)
T ss_pred CCCCcccCCCCCCHHHHHhh
Confidence 99988899998899888775
No 8
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.92 E-value=7.2e-24 Score=131.31 Aligned_cols=97 Identities=13% Similarity=0.389 Sum_probs=89.3
Q ss_pred EecchhhHHHHHcCCCCEEEEEeCCCChhHHhhhHHHHHHHhhcCC--ceEEEEEecCCchhhhHhcCCCcccEEEEEeC
Q psy5679 46 IIEKIDDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG--VEFVKINVENGGGEIAREFEVQAVPTVIGFRN 123 (149)
Q Consensus 46 ~i~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~--v~~~~vd~~~~~~~~~~~~~i~~~Pt~~~~~~ 123 (149)
++.+.++|++++.++++++|+||++||++|+.+.|.++++++.+++ +.|+.+|+| + ++++++|+|+++||+++|++
T Consensus 3 ~i~~~~~~~~~i~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~-~~~~~~~~v~~~Pt~~~~~~ 80 (102)
T cd02948 3 EINNQEEWEELLSNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-T-IDTLKRYRGKCEPTFLFYKN 80 (102)
T ss_pred EccCHHHHHHHHccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-C-HHHHHHcCCCcCcEEEEEEC
Confidence 3567899999998899999999999999999999999999999974 789999999 6 78999999999999999999
Q ss_pred CeeeeeeeCCCCHHHHHHHHHH
Q psy5679 124 GDPVDTVVGNADQDVIQTLVSK 145 (149)
Q Consensus 124 g~~~~~~~g~~~~~~l~~~i~~ 145 (149)
|+.+.+..| .+.+.+.++|++
T Consensus 81 g~~~~~~~G-~~~~~~~~~i~~ 101 (102)
T cd02948 81 GELVAVIRG-ANAPLLNKTITE 101 (102)
T ss_pred CEEEEEEec-CChHHHHHHHhh
Confidence 999999999 689999999875
No 9
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.92 E-value=2.5e-24 Score=133.73 Aligned_cols=98 Identities=19% Similarity=0.438 Sum_probs=89.2
Q ss_pred EEEecchhhHHHHH-cCCCCEEEEEeCCCChhHHhhhHHHHHHHhhcCC-ceEEEEEecCCchhhhHhcCCCcccEEEEE
Q psy5679 44 YLIIEKIDDFKQTI-RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENGGGEIAREFEVQAVPTVIGF 121 (149)
Q Consensus 44 v~~i~~~~~~~~~~-~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~~~~~~~~~~i~~~Pt~~~~ 121 (149)
+++++ .++|++.+ .++++++|.||++||++|+.+.|.++++++.+++ +.|+.+|++++ ++++++|+|+++||+++|
T Consensus 3 v~~l~-~~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~-~~~~~~~~i~~~Pt~~~~ 80 (104)
T cd03004 3 VITLT-PEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKY-ESLCQQANIRAYPTIRLY 80 (104)
T ss_pred ceEcC-HHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCch-HHHHHHcCCCcccEEEEE
Confidence 56676 48999987 6778999999999999999999999999999977 99999999999 999999999999999999
Q ss_pred eCC-eeeeeeeCCCC-HHHHHHHH
Q psy5679 122 RNG-DPVDTVVGNAD-QDVIQTLV 143 (149)
Q Consensus 122 ~~g-~~~~~~~g~~~-~~~l~~~i 143 (149)
++| +....+.|..+ .++|.+||
T Consensus 81 ~~g~~~~~~~~G~~~~~~~l~~~i 104 (104)
T cd03004 81 PGNASKYHSYNGWHRDADSILEFI 104 (104)
T ss_pred cCCCCCceEccCCCCCHHHHHhhC
Confidence 887 88889999876 88888875
No 10
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.92 E-value=3.9e-24 Score=135.14 Aligned_cols=102 Identities=13% Similarity=0.255 Sum_probs=93.9
Q ss_pred eEEEecchhhHHHHH-cCCCCEEEEEeCCCChh--HH--hhhHHHHHHHhhc--CC-ceEEEEEecCCchhhhHhcCCCc
Q psy5679 43 AYLIIEKIDDFKQTI-RGRNPVLAYFFKPSCGF--CK--QLEPKISTVSETT--SG-VEFVKINVENGGGEIAREFEVQA 114 (149)
Q Consensus 43 ~v~~i~~~~~~~~~~-~~~~~~vv~f~~~~C~~--C~--~~~~~l~~~~~~~--~~-v~~~~vd~~~~~~~~~~~~~i~~ 114 (149)
.+..+++ ++|++.+ .++.++|++||+.||++ |+ .+.|.+++++.++ ++ +.|++||++++ ++++++|+|.+
T Consensus 10 ~v~~lt~-~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~-~~La~~~~I~~ 87 (120)
T cd03065 10 RVIDLNE-KNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKD-AKVAKKLGLDE 87 (120)
T ss_pred ceeeCCh-hhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCC-HHHHHHcCCcc
Confidence 3777875 9999999 77889999999999987 99 8999999999998 65 99999999999 99999999999
Q ss_pred ccEEEEEeCCeeeeeeeCCCCHHHHHHHHHHHh
Q psy5679 115 VPTVIGFRNGDPVDTVVGNADQDVIQTLVSKLS 147 (149)
Q Consensus 115 ~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~ 147 (149)
+||+++|++|+.+. +.|..+.+.|.+||++++
T Consensus 88 iPTl~lfk~G~~v~-~~G~~~~~~l~~~l~~~~ 119 (120)
T cd03065 88 EDSIYVFKDDEVIE-YDGEFAADTLVEFLLDLI 119 (120)
T ss_pred ccEEEEEECCEEEE-eeCCCCHHHHHHHHHHHh
Confidence 99999999999887 999999999999999875
No 11
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.92 E-value=1.2e-23 Score=130.52 Aligned_cols=95 Identities=18% Similarity=0.320 Sum_probs=85.8
Q ss_pred chhhHHHHH--cCCCCEEEEEeCCCChhHHhhhHHHHHHHhhcCCceEEEEEecCCch---hhhHhcCCCcccEEEEEeC
Q psy5679 49 KIDDFKQTI--RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGG---EIAREFEVQAVPTVIGFRN 123 (149)
Q Consensus 49 ~~~~~~~~~--~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~---~~~~~~~i~~~Pt~~~~~~ 123 (149)
+.++|++.+ ..+++++|.||++||++|+.+.|.++++++.++++.|+.+|++++ . +++++|+|.++||+++|++
T Consensus 2 ~~~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~-~~~~~l~~~~~V~~~Pt~~~~~~ 80 (103)
T cd02985 2 SVEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDEN-DSTMELCRREKIIEVPHFLFYKD 80 (103)
T ss_pred CHHHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCC-hHHHHHHHHcCCCcCCEEEEEeC
Confidence 357888888 448999999999999999999999999999996699999999987 4 7899999999999999999
Q ss_pred CeeeeeeeCCCCHHHHHHHHHH
Q psy5679 124 GDPVDTVVGNADQDVIQTLVSK 145 (149)
Q Consensus 124 g~~~~~~~g~~~~~~l~~~i~~ 145 (149)
|+.+.++.| ...++|.+.|..
T Consensus 81 G~~v~~~~G-~~~~~l~~~~~~ 101 (103)
T cd02985 81 GEKIHEEEG-IGPDELIGDVLY 101 (103)
T ss_pred CeEEEEEeC-CCHHHHHHHHHh
Confidence 999999999 778888887764
No 12
>KOG0907|consensus
Probab=99.91 E-value=1e-23 Score=130.46 Aligned_cols=87 Identities=34% Similarity=0.672 Sum_probs=81.9
Q ss_pred cCCCCEEEEEeCCCChhHHhhhHHHHHHHhhcCCceEEEEEecCCchhhhHhcCCCcccEEEEEeCCeeeeeeeCCCCHH
Q psy5679 58 RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTVIGFRNGDPVDTVVGNADQD 137 (149)
Q Consensus 58 ~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~ 137 (149)
..+++++|+||++||++|+.+.|.+++++.+|+++.|+++|+|+. .++++.++|..+||++++++|+.+.++.| .+.+
T Consensus 19 ~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde~-~~~~~~~~V~~~PTf~f~k~g~~~~~~vG-a~~~ 96 (106)
T KOG0907|consen 19 AGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDEL-EEVAKEFNVKAMPTFVFYKGGEEVDEVVG-ANKA 96 (106)
T ss_pred CCCCeEEEEEECCCCcchhhhhhHHHHHHHHCCCCEEEEEecccC-HhHHHhcCceEeeEEEEEECCEEEEEEec-CCHH
Confidence 557999999999999999999999999999999999999999997 99999999999999999999999999999 7888
Q ss_pred HHHHHHHHH
Q psy5679 138 VIQTLVSKL 146 (149)
Q Consensus 138 ~l~~~i~~~ 146 (149)
++++.|.++
T Consensus 97 ~l~~~i~~~ 105 (106)
T KOG0907|consen 97 ELEKKIAKH 105 (106)
T ss_pred HHHHHHHhc
Confidence 888887754
No 13
>PRK09381 trxA thioredoxin; Provisional
Probab=99.91 E-value=2.4e-23 Score=130.35 Aligned_cols=104 Identities=20% Similarity=0.509 Sum_probs=95.7
Q ss_pred eEEEecchhhHHHHH-cCCCCEEEEEeCCCChhHHhhhHHHHHHHhhcCC-ceEEEEEecCCchhhhHhcCCCcccEEEE
Q psy5679 43 AYLIIEKIDDFKQTI-RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENGGGEIAREFEVQAVPTVIG 120 (149)
Q Consensus 43 ~v~~i~~~~~~~~~~-~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~~~~~~~~~~i~~~Pt~~~ 120 (149)
.|+++++ ++|++.+ ..+++++|+||++||++|+.+.|.++++++.+++ +.++.+|++.+ +.++++|+++++|++++
T Consensus 4 ~v~~~~~-~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~-~~~~~~~~v~~~Pt~~~ 81 (109)
T PRK09381 4 KIIHLTD-DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQN-PGTAPKYGIRGIPTLLL 81 (109)
T ss_pred cceeeCh-hhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCC-hhHHHhCCCCcCCEEEE
Confidence 3777875 8888765 7799999999999999999999999999999987 99999999999 99999999999999999
Q ss_pred EeCCeeeeeeeCCCCHHHHHHHHHHHhc
Q psy5679 121 FRNGDPVDTVVGNADQDVIQTLVSKLSQ 148 (149)
Q Consensus 121 ~~~g~~~~~~~g~~~~~~l~~~i~~~~~ 148 (149)
|++|+.+....|..+.+++.++|...++
T Consensus 82 ~~~G~~~~~~~G~~~~~~l~~~i~~~~~ 109 (109)
T PRK09381 82 FKNGEVAATKVGALSKGQLKEFLDANLA 109 (109)
T ss_pred EeCCeEEEEecCCCCHHHHHHHHHHhcC
Confidence 9999999999998899999999998764
No 14
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.91 E-value=1.6e-23 Score=135.24 Aligned_cols=104 Identities=18% Similarity=0.197 Sum_probs=93.3
Q ss_pred EEEecchhhHHHHH--cCCCCEEEEEeCCCChhHHhhhHHHHHHHhhcCC-ceEEEEEecCCchhhhHhcCCCcccEEE-
Q psy5679 44 YLIIEKIDDFKQTI--RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENGGGEIAREFEVQAVPTVI- 119 (149)
Q Consensus 44 v~~i~~~~~~~~~~--~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~~~~~~~~~~i~~~Pt~~- 119 (149)
+.++.+.++|++.+ ..+++++|.||++||++|+.+.|.|+++++++++ +.|++||+|++ +++++.|+|++.|+++
T Consensus 5 l~~l~s~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~-~dla~~y~I~~~~t~~~ 83 (142)
T PLN00410 5 LPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEV-PDFNTMYELYDPCTVMF 83 (142)
T ss_pred HhhhCCHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCC-HHHHHHcCccCCCcEEE
Confidence 45667889999999 5789999999999999999999999999999998 88899999999 9999999999887777
Q ss_pred EEeCCe-eeeeeeC--------CCCHHHHHHHHHHHhc
Q psy5679 120 GFRNGD-PVDTVVG--------NADQDVIQTLVSKLSQ 148 (149)
Q Consensus 120 ~~~~g~-~~~~~~g--------~~~~~~l~~~i~~~~~ 148 (149)
+|++|+ .+++..| ..+.++|.+.++.+++
T Consensus 84 ffk~g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~~ 121 (142)
T PLN00410 84 FFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYR 121 (142)
T ss_pred EEECCeEEEEEecccccccccccCCHHHHHHHHHHHHH
Confidence 889998 8888888 5788899998887653
No 15
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.91 E-value=1.9e-23 Score=127.95 Aligned_cols=92 Identities=30% Similarity=0.556 Sum_probs=84.8
Q ss_pred hHHHHH--cCCCCEEEEEeCCCChhHHhhhHHHHHHHhhcCC-ceEEEEEecCCchhhhHhcCCCcccEEEEEeCCeeee
Q psy5679 52 DFKQTI--RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENGGGEIAREFEVQAVPTVIGFRNGDPVD 128 (149)
Q Consensus 52 ~~~~~~--~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~ 128 (149)
+|++.+ +.+++++|+||++||++|+.+.|.+++++..+++ +.++.+|++++ +.++++|++.++|++++|++|+.+.
T Consensus 2 ~f~~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~-~~l~~~~~i~~~Pt~~~~~~g~~~~ 80 (96)
T cd02956 2 NFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQ-PQIAQQFGVQALPTVYLFAAGQPVD 80 (96)
T ss_pred ChHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCC-HHHHHHcCCCCCCEEEEEeCCEEee
Confidence 566666 3478999999999999999999999999999987 89999999999 9999999999999999999999999
Q ss_pred eeeCCCCHHHHHHHHH
Q psy5679 129 TVVGNADQDVIQTLVS 144 (149)
Q Consensus 129 ~~~g~~~~~~l~~~i~ 144 (149)
.+.|..+.++|.+||+
T Consensus 81 ~~~g~~~~~~l~~~l~ 96 (96)
T cd02956 81 GFQGAQPEEQLRQMLD 96 (96)
T ss_pred eecCCCCHHHHHHHhC
Confidence 9999889999999874
No 16
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.91 E-value=5.6e-23 Score=129.38 Aligned_cols=88 Identities=25% Similarity=0.546 Sum_probs=83.4
Q ss_pred EEEecchhhHHHHHcCCCCEEEEEeCCCChhHHhhhHHHHHHHhhcCCceEEEEEecCCchhhhHhcCCCcccEEEEEeC
Q psy5679 44 YLIIEKIDDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTVIGFRN 123 (149)
Q Consensus 44 v~~i~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~~i~~~Pt~~~~~~ 123 (149)
+.++++.++|.+.+.++++++|+||++||++|+.+.|.++++++.++++.|++||++++ ++++++|+|.++||+++|++
T Consensus 6 v~~i~~~~~~~~~i~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~-~~l~~~~~v~~vPt~l~fk~ 84 (113)
T cd02989 6 YREVSDEKEFFEIVKSSERVVCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAEKA-PFLVEKLNIKVLPTVILFKN 84 (113)
T ss_pred eEEeCCHHHHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEcccC-HHHHHHCCCccCCEEEEEEC
Confidence 77888889999999888999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred CeeeeeeeC
Q psy5679 124 GDPVDTVVG 132 (149)
Q Consensus 124 g~~~~~~~g 132 (149)
|+.+.+..|
T Consensus 85 G~~v~~~~g 93 (113)
T cd02989 85 GKTVDRIVG 93 (113)
T ss_pred CEEEEEEEC
Confidence 999887765
No 17
>PRK10996 thioredoxin 2; Provisional
Probab=99.91 E-value=9.2e-23 Score=132.87 Aligned_cols=102 Identities=26% Similarity=0.556 Sum_probs=94.8
Q ss_pred EEEecchhhHHHHHcCCCCEEEEEeCCCChhHHhhhHHHHHHHhhcCC-ceEEEEEecCCchhhhHhcCCCcccEEEEEe
Q psy5679 44 YLIIEKIDDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENGGGEIAREFEVQAVPTVIGFR 122 (149)
Q Consensus 44 v~~i~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~~~~~~~~~~i~~~Pt~~~~~ 122 (149)
+.+++ .++|++++..+++++|+||++||++|+.+.+.++++++.+.+ +.++.+|++++ ++++++|+|.++|++++|+
T Consensus 37 ~i~~~-~~~~~~~i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~-~~l~~~~~V~~~Ptlii~~ 114 (139)
T PRK10996 37 VINAT-GETLDKLLQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAE-RELSARFRIRSIPTIMIFK 114 (139)
T ss_pred CEEcC-HHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCC-HHHHHhcCCCccCEEEEEE
Confidence 55665 589999888899999999999999999999999999999876 99999999999 9999999999999999999
Q ss_pred CCeeeeeeeCCCCHHHHHHHHHHHh
Q psy5679 123 NGDPVDTVVGNADQDVIQTLVSKLS 147 (149)
Q Consensus 123 ~g~~~~~~~g~~~~~~l~~~i~~~~ 147 (149)
+|+.+..+.|..+.+++.+||++++
T Consensus 115 ~G~~v~~~~G~~~~e~l~~~l~~~~ 139 (139)
T PRK10996 115 NGQVVDMLNGAVPKAPFDSWLNEAL 139 (139)
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHhC
Confidence 9999999999999999999999864
No 18
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.90 E-value=2.7e-23 Score=129.97 Aligned_cols=98 Identities=19% Similarity=0.393 Sum_probs=87.7
Q ss_pred EEEecchhhHHHHHcCCCCEEEEEeCCCChhHHhhhHHHHHHHhhcC-------CceEEEEEecCCchhhhHhcCCCccc
Q psy5679 44 YLIIEKIDDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTS-------GVEFVKINVENGGGEIAREFEVQAVP 116 (149)
Q Consensus 44 v~~i~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~-------~v~~~~vd~~~~~~~~~~~~~i~~~P 116 (149)
+.++++ ++|++.+..+++++|.||++||++|+.+.|.++++++.++ .+.++.+|++++ .+++++|+|+++|
T Consensus 3 v~~l~~-~~f~~~i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~-~~l~~~~~v~~~P 80 (108)
T cd02996 3 IVSLTS-GNIDDILQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKE-SDIADRYRINKYP 80 (108)
T ss_pred eEEcCH-hhHHHHHhcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCC-HHHHHhCCCCcCC
Confidence 677875 8999988888999999999999999999999999988642 288999999999 9999999999999
Q ss_pred EEEEEeCCee-eeeeeCCCCHHHHHHHH
Q psy5679 117 TVIGFRNGDP-VDTVVGNADQDVIQTLV 143 (149)
Q Consensus 117 t~~~~~~g~~-~~~~~g~~~~~~l~~~i 143 (149)
|+++|++|+. ...+.|..+.++|.+||
T Consensus 81 tl~~~~~g~~~~~~~~g~~~~~~l~~fi 108 (108)
T cd02996 81 TLKLFRNGMMMKREYRGQRSVEALAEFV 108 (108)
T ss_pred EEEEEeCCcCcceecCCCCCHHHHHhhC
Confidence 9999999984 46888989999998875
No 19
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.90 E-value=2.9e-23 Score=128.04 Aligned_cols=91 Identities=14% Similarity=0.277 Sum_probs=82.4
Q ss_pred hhHHHHH--cCCCCEEEEEeCCCChhHHhhhHHHHHHHhhcCCceEEEEEec-CCchhhhHhcCCCcccEEEEEeCCeee
Q psy5679 51 DDFKQTI--RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVE-NGGGEIAREFEVQAVPTVIGFRNGDPV 127 (149)
Q Consensus 51 ~~~~~~~--~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~-~~~~~~~~~~~i~~~Pt~~~~~~g~~~ 127 (149)
+.+.+++ .++++++|.||++||++|+.+.|.++++++.++++.++.+|.+ ++ ++++++|+|.++||+++|++| .+
T Consensus 7 ~~~~~~~~~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~~~~-~~l~~~~~V~~~PT~~lf~~g-~~ 84 (100)
T cd02999 7 NIALDLMAFNREDYTAVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEESSIK-PSLLSRYGVVGFPTILLFNST-PR 84 (100)
T ss_pred hHHHHHHHhcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhccCceEEEECCCCC-HHHHHhcCCeecCEEEEEcCC-ce
Confidence 4455555 6899999999999999999999999999999988889999998 78 899999999999999999999 77
Q ss_pred eeeeCCCCHHHHHHHH
Q psy5679 128 DTVVGNADQDVIQTLV 143 (149)
Q Consensus 128 ~~~~g~~~~~~l~~~i 143 (149)
.++.|..+.+.|.+||
T Consensus 85 ~~~~G~~~~~~l~~f~ 100 (100)
T cd02999 85 VRYNGTRTLDSLAAFY 100 (100)
T ss_pred eEecCCCCHHHHHhhC
Confidence 8999999999998875
No 20
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.90 E-value=3.9e-23 Score=129.84 Aligned_cols=96 Identities=21% Similarity=0.342 Sum_probs=87.4
Q ss_pred hhhHHHHH---cCCCCEEEEEeCCCChhHHhhhHHHHHHHhhcCC--ceEEEEEecCCchhhhHhcCCCcccEEEEEeCC
Q psy5679 50 IDDFKQTI---RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG--VEFVKINVENGGGEIAREFEVQAVPTVIGFRNG 124 (149)
Q Consensus 50 ~~~~~~~~---~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~--v~~~~vd~~~~~~~~~~~~~i~~~Pt~~~~~~g 124 (149)
.++|.+.+ ..+++++|+||++||++|+.+.|.++++++.+++ +.++.+|++++ +.++++++|.++||+++|++|
T Consensus 11 ~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~-~~l~~~~~V~~~Pt~~i~~~g 89 (111)
T cd02963 11 FSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHE-RRLARKLGAHSVPAIVGIING 89 (111)
T ss_pred HHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEecccc-HHHHHHcCCccCCEEEEEECC
Confidence 47777654 3789999999999999999999999999999974 89999999999 999999999999999999999
Q ss_pred eeeeeeeCCCCHHHHHHHHHHH
Q psy5679 125 DPVDTVVGNADQDVIQTLVSKL 146 (149)
Q Consensus 125 ~~~~~~~g~~~~~~l~~~i~~~ 146 (149)
+.+.+..|..+.++|.++|+++
T Consensus 90 ~~~~~~~G~~~~~~l~~~i~~~ 111 (111)
T cd02963 90 QVTFYHDSSFTKQHVVDFVRKL 111 (111)
T ss_pred EEEEEecCCCCHHHHHHHHhcC
Confidence 9988999988999999998763
No 21
>PTZ00051 thioredoxin; Provisional
Probab=99.90 E-value=1.3e-22 Score=124.67 Aligned_cols=97 Identities=28% Similarity=0.542 Sum_probs=89.8
Q ss_pred eEEEecchhhHHHHHcCCCCEEEEEeCCCChhHHhhhHHHHHHHhhcCCceEEEEEecCCchhhhHhcCCCcccEEEEEe
Q psy5679 43 AYLIIEKIDDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTVIGFR 122 (149)
Q Consensus 43 ~v~~i~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~~i~~~Pt~~~~~ 122 (149)
++.++++.+++.+++..+++++|+||++||++|+.+.+.++++++.++++.|+.+|++++ ..++++|++.++|++++++
T Consensus 1 ~v~~i~~~~~~~~~~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~-~~~~~~~~v~~~Pt~~~~~ 79 (98)
T PTZ00051 1 MVHIVTSQAEFESTLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDEL-SEVAEKENITSMPTFKVFK 79 (98)
T ss_pred CeEEecCHHHHHHHHhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcch-HHHHHHCCCceeeEEEEEe
Confidence 367888889999999889999999999999999999999999999998899999999999 9999999999999999999
Q ss_pred CCeeeeeeeCCCCHHHHHH
Q psy5679 123 NGDPVDTVVGNADQDVIQT 141 (149)
Q Consensus 123 ~g~~~~~~~g~~~~~~l~~ 141 (149)
+|+.+..+.| ...++|.+
T Consensus 80 ~g~~~~~~~G-~~~~~~~~ 97 (98)
T PTZ00051 80 NGSVVDTLLG-ANDEALKQ 97 (98)
T ss_pred CCeEEEEEeC-CCHHHhhc
Confidence 9999999999 57777654
No 22
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.90 E-value=1.2e-22 Score=125.46 Aligned_cols=97 Identities=18% Similarity=0.408 Sum_probs=86.8
Q ss_pred EEEecchhhHHHHHcCCCCEEEEEeCCCChhHHhhhHHHHHHHhhcCC--ceEEEEEecCCchhhhHhcCCCcccEEEEE
Q psy5679 44 YLIIEKIDDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG--VEFVKINVENGGGEIAREFEVQAVPTVIGF 121 (149)
Q Consensus 44 v~~i~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~--v~~~~vd~~~~~~~~~~~~~i~~~Pt~~~~ 121 (149)
+.+++. ++|++++. +.++|.||++||++|+.+.|.++++++.+++ +.++.+|++++ +.++++|+|.++||++++
T Consensus 3 v~~l~~-~~f~~~~~--~~~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~-~~~~~~~~i~~~Pt~~~~ 78 (101)
T cd02994 3 VVELTD-SNWTLVLE--GEWMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQE-PGLSGRFFVTALPTIYHA 78 (101)
T ss_pred eEEcCh-hhHHHHhC--CCEEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCC-HhHHHHcCCcccCEEEEe
Confidence 677874 89998873 3389999999999999999999999998764 89999999999 999999999999999999
Q ss_pred eCCeeeeeeeCCCCHHHHHHHHHH
Q psy5679 122 RNGDPVDTVVGNADQDVIQTLVSK 145 (149)
Q Consensus 122 ~~g~~~~~~~g~~~~~~l~~~i~~ 145 (149)
++|+. ..+.|..+.++|.+||++
T Consensus 79 ~~g~~-~~~~G~~~~~~l~~~i~~ 101 (101)
T cd02994 79 KDGVF-RRYQGPRDKEDLISFIEE 101 (101)
T ss_pred CCCCE-EEecCCCCHHHHHHHHhC
Confidence 99985 788998999999999864
No 23
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.89 E-value=1.3e-22 Score=126.84 Aligned_cols=99 Identities=22% Similarity=0.488 Sum_probs=88.7
Q ss_pred EEEecchhhHHHHH-cCCCCEEEEEeCCCChhHHhhhHHHHHHHhhcCC-ceEEEEEecC--CchhhhHhcCCCcccEEE
Q psy5679 44 YLIIEKIDDFKQTI-RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVEN--GGGEIAREFEVQAVPTVI 119 (149)
Q Consensus 44 v~~i~~~~~~~~~~-~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~--~~~~~~~~~~i~~~Pt~~ 119 (149)
+.++++ ++|++.+ ..+++++|+||++||++|+.+.|.++++++.+++ +.++.+|++. + .+++++|+|.++|+++
T Consensus 2 v~~l~~-~~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~-~~~~~~~~i~~~Pt~~ 79 (109)
T cd03002 2 VYELTP-KNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKN-KPLCGKYGVQGFPTLK 79 (109)
T ss_pred eEEcch-hhHHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCcccc-HHHHHHcCCCcCCEEE
Confidence 567775 8999998 6788899999999999999999999999999987 8999999998 7 8999999999999999
Q ss_pred EEeCCe-----eeeeeeCCCCHHHHHHHHH
Q psy5679 120 GFRNGD-----PVDTVVGNADQDVIQTLVS 144 (149)
Q Consensus 120 ~~~~g~-----~~~~~~g~~~~~~l~~~i~ 144 (149)
+|++|+ ....+.|..+.++|.+||.
T Consensus 80 ~~~~~~~~~~~~~~~~~G~~~~~~l~~fi~ 109 (109)
T cd03002 80 VFRPPKKASKHAVEDYNGERSAKAIVDFVL 109 (109)
T ss_pred EEeCCCcccccccccccCccCHHHHHHHhC
Confidence 998875 4567889899999999873
No 24
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.89 E-value=1.8e-22 Score=125.15 Aligned_cols=94 Identities=13% Similarity=0.176 Sum_probs=87.0
Q ss_pred EEecchhhHHHHHcCCCCEEEEEeCCC--ChhHHhhhHHHHHHHhhcCC-ceEEEEEecCCchhhhHhcCCCcccEEEEE
Q psy5679 45 LIIEKIDDFKQTIRGRNPVLAYFFKPS--CGFCKQLEPKISTVSETTSG-VEFVKINVENGGGEIAREFEVQAVPTVIGF 121 (149)
Q Consensus 45 ~~i~~~~~~~~~~~~~~~~vv~f~~~~--C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~~~~~~~~~~i~~~Pt~~~~ 121 (149)
..++ ..+|++.++.++.++|.||++| |++|+.+.|.|+++++++++ +.|+.+|++++ +.++.+|+|.++||+++|
T Consensus 13 ~~~~-~~~~~~~~~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~-~~la~~f~V~sIPTli~f 90 (111)
T cd02965 13 PRVD-AATLDDWLAAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADE-QALAARFGVLRTPALLFF 90 (111)
T ss_pred cccc-cccHHHHHhCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCC-HHHHHHcCCCcCCEEEEE
Confidence 3455 4888888888999999999997 99999999999999999998 89999999999 999999999999999999
Q ss_pred eCCeeeeeeeCCCCHHHHH
Q psy5679 122 RNGDPVDTVVGNADQDVIQ 140 (149)
Q Consensus 122 ~~g~~~~~~~g~~~~~~l~ 140 (149)
++|+.+....|..+.+++.
T Consensus 91 kdGk~v~~~~G~~~~~e~~ 109 (111)
T cd02965 91 RDGRYVGVLAGIRDWDEYV 109 (111)
T ss_pred ECCEEEEEEeCccCHHHHh
Confidence 9999999999988888775
No 25
>KOG0908|consensus
Probab=99.89 E-value=1.5e-22 Score=139.03 Aligned_cols=105 Identities=30% Similarity=0.538 Sum_probs=99.5
Q ss_pred eeEEEecchhhHHHHH--cCCCCEEEEEeCCCChhHHhhhHHHHHHHhhcCCceEEEEEecCCchhhhHhcCCCcccEEE
Q psy5679 42 MAYLIIEKIDDFKQTI--RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTVI 119 (149)
Q Consensus 42 ~~v~~i~~~~~~~~~~--~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~~i~~~Pt~~ 119 (149)
|+|+.+++..+|+..+ ...+.++|.|++.||++|+...|.++.++.+|++..|++||+|++ ...+..+||+..||++
T Consensus 1 m~Vi~v~~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~aVFlkVdVd~c-~~taa~~gV~amPTFi 79 (288)
T KOG0908|consen 1 MPVIVVNSDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPGAVFLKVDVDEC-RGTAATNGVNAMPTFI 79 (288)
T ss_pred CCeEEecCcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCcccEEEEEeHHHh-hchhhhcCcccCceEE
Confidence 5789999999999999 566799999999999999999999999999999999999999999 9999999999999999
Q ss_pred EEeCCeeeeeeeCCCCHHHHHHHHHHHhc
Q psy5679 120 GFRNGDPVDTVVGNADQDVIQTLVSKLSQ 148 (149)
Q Consensus 120 ~~~~g~~~~~~~g~~~~~~l~~~i~~~~~ 148 (149)
+|.||+.+..+.| .+..-|++.|.+++.
T Consensus 80 ff~ng~kid~~qG-Ad~~gLe~kv~~~~s 107 (288)
T KOG0908|consen 80 FFRNGVKIDQIQG-ADASGLEEKVAKYAS 107 (288)
T ss_pred EEecCeEeeeecC-CCHHHHHHHHHHHhc
Confidence 9999999999999 899999999998865
No 26
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.89 E-value=5.7e-22 Score=137.67 Aligned_cols=104 Identities=16% Similarity=0.441 Sum_probs=94.8
Q ss_pred eEEEecchhhHHHHHc-----CCCCEEEEEeCCCChhHHhhhHHHHHHHhhcCC-ceEEEEEecCCchhhhHhcCCCccc
Q psy5679 43 AYLIIEKIDDFKQTIR-----GRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENGGGEIAREFEVQAVP 116 (149)
Q Consensus 43 ~v~~i~~~~~~~~~~~-----~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~~~~~~~~~~i~~~P 116 (149)
.+.++++ ++|++.+. .+++++|+||++||++|+.+.|.++++++.+++ +.|+.+|++++ ++++++|+|.++|
T Consensus 31 ~Vv~Lt~-~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~-~~l~~~~~I~~~P 108 (224)
T PTZ00443 31 ALVLLND-KNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRA-LNLAKRFAIKGYP 108 (224)
T ss_pred CcEECCH-HHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCccc-HHHHHHcCCCcCC
Confidence 3778875 89999872 368999999999999999999999999999988 99999999999 9999999999999
Q ss_pred EEEEEeCCeeeeeeeCCCCHHHHHHHHHHHhc
Q psy5679 117 TVIGFRNGDPVDTVVGNADQDVIQTLVSKLSQ 148 (149)
Q Consensus 117 t~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~~ 148 (149)
|+++|++|+.+.+..|..+.+++.+|+.+..+
T Consensus 109 Tl~~f~~G~~v~~~~G~~s~e~L~~fi~~~~~ 140 (224)
T PTZ00443 109 TLLLFDKGKMYQYEGGDRSTEKLAAFALGDFK 140 (224)
T ss_pred EEEEEECCEEEEeeCCCCCHHHHHHHHHHHHH
Confidence 99999999998888888899999999988754
No 27
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.89 E-value=4e-22 Score=123.20 Aligned_cols=97 Identities=30% Similarity=0.614 Sum_probs=87.1
Q ss_pred EEEecchhhHHHHHcCCCCEEEEEeCCCChhHHhhhHHHHHHHhhcCC----ceEEEEEecCCchhhhHhcCCCcccEEE
Q psy5679 44 YLIIEKIDDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG----VEFVKINVENGGGEIAREFEVQAVPTVI 119 (149)
Q Consensus 44 v~~i~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~----v~~~~vd~~~~~~~~~~~~~i~~~Pt~~ 119 (149)
++.+++ ++|++.+..+ .++|+||++||++|+.+.|.++++++.+++ +.++.+|++++ ..++++|++.++|+++
T Consensus 2 ~~~l~~-~~f~~~~~~~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~-~~~~~~~~v~~~Pt~~ 78 (102)
T cd03005 2 VLELTE-DNFDHHIAEG-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQH-RELCSEFQVRGYPTLL 78 (102)
T ss_pred eeECCH-HHHHHHhhcC-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCC-hhhHhhcCCCcCCEEE
Confidence 456765 8899998544 599999999999999999999999998853 89999999999 9999999999999999
Q ss_pred EEeCCeeeeeeeCCCCHHHHHHHH
Q psy5679 120 GFRNGDPVDTVVGNADQDVIQTLV 143 (149)
Q Consensus 120 ~~~~g~~~~~~~g~~~~~~l~~~i 143 (149)
+|++|+.+..+.|..+.++|.+||
T Consensus 79 ~~~~g~~~~~~~G~~~~~~l~~~i 102 (102)
T cd03005 79 LFKDGEKVDKYKGTRDLDSLKEFV 102 (102)
T ss_pred EEeCCCeeeEeeCCCCHHHHHhhC
Confidence 999999888999999999888875
No 28
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.88 E-value=6.3e-22 Score=122.67 Aligned_cols=98 Identities=22% Similarity=0.528 Sum_probs=88.9
Q ss_pred EEEecchhhHHHHHcCCCCEEEEEeCCCChhHHhhhHHHHHHHhhcC--C-ceEEEEEecC--CchhhhHhcCCCcccEE
Q psy5679 44 YLIIEKIDDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTS--G-VEFVKINVEN--GGGEIAREFEVQAVPTV 118 (149)
Q Consensus 44 v~~i~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~--~-v~~~~vd~~~--~~~~~~~~~~i~~~Pt~ 118 (149)
+.++++ ++|++.+..+++++|+||++||++|+.+.|.+.++++.++ + +.++.+|++. + +.++++|+++++|++
T Consensus 2 ~~~l~~-~~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~-~~~~~~~~i~~~Pt~ 79 (104)
T cd02997 2 VVHLTD-EDFRKFLKKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEH-DALKEEYNVKGFPTF 79 (104)
T ss_pred eEEech-HhHHHHHhhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCcc-HHHHHhCCCccccEE
Confidence 566764 7999998778899999999999999999999999999886 4 8899999998 7 899999999999999
Q ss_pred EEEeCCeeeeeeeCCCCHHHHHHHH
Q psy5679 119 IGFRNGDPVDTVVGNADQDVIQTLV 143 (149)
Q Consensus 119 ~~~~~g~~~~~~~g~~~~~~l~~~i 143 (149)
+++++|+.+..+.|..+.+++.+||
T Consensus 80 ~~~~~g~~~~~~~g~~~~~~l~~~l 104 (104)
T cd02997 80 KYFENGKFVEKYEGERTAEDIIEFM 104 (104)
T ss_pred EEEeCCCeeEEeCCCCCHHHHHhhC
Confidence 9999999888999999999988875
No 29
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.88 E-value=7.1e-22 Score=122.28 Aligned_cols=98 Identities=20% Similarity=0.465 Sum_probs=87.9
Q ss_pred EEEecchhhHHHHH-cCCCCEEEEEeCCCChhHHhhhHHHHHHHhhcCC-ceEEEEEecCCchhhhHhcCCCcccEEEEE
Q psy5679 44 YLIIEKIDDFKQTI-RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENGGGEIAREFEVQAVPTVIGF 121 (149)
Q Consensus 44 v~~i~~~~~~~~~~-~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~~~~~~~~~~i~~~Pt~~~~ 121 (149)
+.++++ ++|++.+ ..+++++|+||++||++|+.+.|.+.++++.+++ +.++.+|++++ +.++++|+|+++|++++|
T Consensus 2 v~~l~~-~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~i~~~P~~~~~ 79 (103)
T cd03001 2 VVELTD-SNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVH-QSLAQQYGVRGFPTIKVF 79 (103)
T ss_pred eEEcCH-HhHHHHHhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcch-HHHHHHCCCCccCEEEEE
Confidence 567765 8999988 6677799999999999999999999999999877 99999999999 999999999999999999
Q ss_pred eCC-eeeeeeeCCCCHHHHHHHH
Q psy5679 122 RNG-DPVDTVVGNADQDVIQTLV 143 (149)
Q Consensus 122 ~~g-~~~~~~~g~~~~~~l~~~i 143 (149)
++| +....+.|..+.++|.+|+
T Consensus 80 ~~~~~~~~~~~g~~~~~~l~~~~ 102 (103)
T cd03001 80 GAGKNSPQDYQGGRTAKAIVSAA 102 (103)
T ss_pred CCCCcceeecCCCCCHHHHHHHh
Confidence 888 4455788889999999886
No 30
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.88 E-value=1.9e-21 Score=122.57 Aligned_cols=87 Identities=24% Similarity=0.536 Sum_probs=79.9
Q ss_pred eEEEecchhhHHHHHc-C--CCCEEEEEeCCCChhHHhhhHHHHHHHhhcCCceEEEEEecCCchhhhHhcCCCcccEEE
Q psy5679 43 AYLIIEKIDDFKQTIR-G--RNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTVI 119 (149)
Q Consensus 43 ~v~~i~~~~~~~~~~~-~--~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~~i~~~Pt~~ 119 (149)
.+.++++ ++|.+.+. . +++++|+||++||++|+.+.|.++++++.++++.|++||++++ .++++|+|.++||++
T Consensus 5 ~v~~i~~-~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~--~l~~~~~i~~~Pt~~ 81 (113)
T cd02957 5 EVREISS-KEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAEKA--FLVNYLDIKVLPTLL 81 (113)
T ss_pred eEEEEcH-HHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchhh--HHHHhcCCCcCCEEE
Confidence 3778887 89999983 3 4899999999999999999999999999998899999999987 899999999999999
Q ss_pred EEeCCeeeeeeeC
Q psy5679 120 GFRNGDPVDTVVG 132 (149)
Q Consensus 120 ~~~~g~~~~~~~g 132 (149)
+|++|+.+.+..|
T Consensus 82 ~f~~G~~v~~~~G 94 (113)
T cd02957 82 VYKNGELIDNIVG 94 (113)
T ss_pred EEECCEEEEEEec
Confidence 9999999998887
No 31
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.88 E-value=2.7e-21 Score=118.95 Aligned_cols=97 Identities=34% Similarity=0.686 Sum_probs=89.1
Q ss_pred hhhHHHHH-cCCCCEEEEEeCCCChhHHhhhHHHHHHHhhcCC-ceEEEEEecCCchhhhHhcCCCcccEEEEEeCCeee
Q psy5679 50 IDDFKQTI-RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENGGGEIAREFEVQAVPTVIGFRNGDPV 127 (149)
Q Consensus 50 ~~~~~~~~-~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~ 127 (149)
.++|.+.+ ..+++++|+||++||+.|+.+.+.++++++.+++ +.|+.+|++++ ..++++|++.++|+++++++|+.+
T Consensus 3 ~~~~~~~~~~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~-~~~~~~~~v~~~P~~~~~~~g~~~ 81 (101)
T TIGR01068 3 DANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDEN-PDIAAKYGIRSIPTLLLFKNGKEV 81 (101)
T ss_pred HHHHHHHHhhcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCC-HHHHHHcCCCcCCEEEEEeCCcEe
Confidence 47788887 5577999999999999999999999999998886 99999999999 999999999999999999999998
Q ss_pred eeeeCCCCHHHHHHHHHHHh
Q psy5679 128 DTVVGNADQDVIQTLVSKLS 147 (149)
Q Consensus 128 ~~~~g~~~~~~l~~~i~~~~ 147 (149)
..+.|..+.+++.++|++.+
T Consensus 82 ~~~~g~~~~~~l~~~l~~~~ 101 (101)
T TIGR01068 82 DRSVGALPKAALKQLINKNL 101 (101)
T ss_pred eeecCCCCHHHHHHHHHhhC
Confidence 88999889999999998764
No 32
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.87 E-value=1.8e-21 Score=119.29 Aligned_cols=92 Identities=32% Similarity=0.539 Sum_probs=83.1
Q ss_pred hhhHHHHHcC--CCCEEEEEeCCCChhHHhhhHHHHHHHhhc-CCceEEEEEecCCchhhhHhcCCCcccEEEEEeCCee
Q psy5679 50 IDDFKQTIRG--RNPVLAYFFKPSCGFCKQLEPKISTVSETT-SGVEFVKINVENGGGEIAREFEVQAVPTVIGFRNGDP 126 (149)
Q Consensus 50 ~~~~~~~~~~--~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~-~~v~~~~vd~~~~~~~~~~~~~i~~~Pt~~~~~~g~~ 126 (149)
.++|++.+.. +++++|+||++||++|+.+.+.++++++.+ +++.++.+|+++. ++++++|++.++||+++|++|+.
T Consensus 2 ~~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~-~~~~~~~~i~~~Pt~~~~~~g~~ 80 (97)
T cd02984 2 EEEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEEL-PEISEKFEITAVPTFVFFRNGTI 80 (97)
T ss_pred HHHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccC-HHHHHhcCCccccEEEEEECCEE
Confidence 4788888843 599999999999999999999999999994 4599999999999 99999999999999999999999
Q ss_pred eeeeeCCCCHHHHHHHH
Q psy5679 127 VDTVVGNADQDVIQTLV 143 (149)
Q Consensus 127 ~~~~~g~~~~~~l~~~i 143 (149)
+.+..| .+.++|.++|
T Consensus 81 ~~~~~g-~~~~~l~~~~ 96 (97)
T cd02984 81 VDRVSG-ADPKELAKKV 96 (97)
T ss_pred EEEEeC-CCHHHHHHhh
Confidence 999999 6788887765
No 33
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.87 E-value=1.9e-21 Score=127.01 Aligned_cols=99 Identities=19% Similarity=0.414 Sum_probs=88.3
Q ss_pred hhhHHHHHcCCCCEEEEEeCCCChhHHhhhHHHHHHHhhcCC-ceEEEEEecCCc-hhhhHhcCCCcccEEEEE-eCCee
Q psy5679 50 IDDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENGG-GEIAREFEVQAVPTVIGF-RNGDP 126 (149)
Q Consensus 50 ~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~~-~~~~~~~~i~~~Pt~~~~-~~g~~ 126 (149)
...+++++..+++++|+||++||++|+.+.|.++++++.+.+ +.|+.||++... ..++++|+|.++|++++| ++|+.
T Consensus 10 ~~~~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G~~ 89 (142)
T cd02950 10 STPPEVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREGNE 89 (142)
T ss_pred cCCHHHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCCCE
Confidence 467788778899999999999999999999999999999976 888888887541 478999999999999999 58999
Q ss_pred eeeeeCCCCHHHHHHHHHHHhc
Q psy5679 127 VDTVVGNADQDVIQTLVSKLSQ 148 (149)
Q Consensus 127 ~~~~~g~~~~~~l~~~i~~~~~ 148 (149)
+.++.|..+.+++.++|+++++
T Consensus 90 v~~~~G~~~~~~l~~~l~~l~~ 111 (142)
T cd02950 90 EGQSIGLQPKQVLAQNLDALVA 111 (142)
T ss_pred EEEEeCCCCHHHHHHHHHHHHc
Confidence 9999998889999999998864
No 34
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.87 E-value=3.9e-21 Score=119.13 Aligned_cols=97 Identities=20% Similarity=0.311 Sum_probs=83.4
Q ss_pred hhhHHHHH--cCCCCEEEEEeCCCChhHHhhhHHHHHHHhhcCC-ceEEEEEecCCchhhhHhcCCCcccEEEEEeCCee
Q psy5679 50 IDDFKQTI--RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENGGGEIAREFEVQAVPTVIGFRNGDP 126 (149)
Q Consensus 50 ~~~~~~~~--~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~~~~~~~~~~i~~~Pt~~~~~~g~~ 126 (149)
.++|++.+ ..+++++|.|+++||++|+.+.|.|+++++++++ +.|+.||+|+. +++++.|+|+..||+++|++|+.
T Consensus 2 ~~~~d~~i~~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev-~dva~~y~I~amPtfvffkngkh 80 (114)
T cd02986 2 KKEVDQAIKSTAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKV-PVYTQYFDISYIPSTIFFFNGQH 80 (114)
T ss_pred HHHHHHHHHhcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEecccc-HHHHHhcCceeCcEEEEEECCcE
Confidence 36788887 4699999999999999999999999999999999 99999999999 99999999999999999999986
Q ss_pred ee---------eeeCC-CCHHHHHHHHHHHh
Q psy5679 127 VD---------TVVGN-ADQDVIQTLVSKLS 147 (149)
Q Consensus 127 ~~---------~~~g~-~~~~~l~~~i~~~~ 147 (149)
+. +..+. .+.+++.+.|+.+.
T Consensus 81 ~~~d~gt~~~~k~~~~~~~k~~~idi~e~~y 111 (114)
T cd02986 81 MKVDYGSPDHTKFVGSFKTKQDFIDLIEVIY 111 (114)
T ss_pred EEEecCCCCCcEEEEEcCchhHHHHHHHHHH
Confidence 63 23333 35677887776653
No 35
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.87 E-value=3.8e-21 Score=118.62 Aligned_cols=97 Identities=26% Similarity=0.514 Sum_probs=88.9
Q ss_pred hhhHHHHHcCCCCEEEEEeCCCChhHHhhhHHHHHHHhhcCC---ceEEEEEecCCchhhhHhcCCCcccEEEEEeCCee
Q psy5679 50 IDDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG---VEFVKINVENGGGEIAREFEVQAVPTVIGFRNGDP 126 (149)
Q Consensus 50 ~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~---v~~~~vd~~~~~~~~~~~~~i~~~Pt~~~~~~g~~ 126 (149)
.++|++.+.++++++|+||++||+.|+.+.+.+++++..+++ +.++.+|++++ +.++++|++.++|++++|++|+.
T Consensus 3 ~~~~~~~~~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~~i~~~P~~~~~~~~~~ 81 (102)
T TIGR01126 3 ASNFDDIVLSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAE-KDLASRFGVSGFPTIKFFPKGKK 81 (102)
T ss_pred hhhHHHHhccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccch-HHHHHhCCCCcCCEEEEecCCCc
Confidence 478888888899999999999999999999999999999885 99999999999 99999999999999999988776
Q ss_pred eeeeeCCCCHHHHHHHHHHHh
Q psy5679 127 VDTVVGNADQDVIQTLVSKLS 147 (149)
Q Consensus 127 ~~~~~g~~~~~~l~~~i~~~~ 147 (149)
...+.|..+.++|..||++++
T Consensus 82 ~~~~~g~~~~~~l~~~i~~~~ 102 (102)
T TIGR01126 82 PVDYEGGRDLEAIVEFVNEKS 102 (102)
T ss_pred ceeecCCCCHHHHHHHHHhcC
Confidence 678999889999999998753
No 36
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.86 E-value=8.2e-21 Score=124.77 Aligned_cols=87 Identities=22% Similarity=0.339 Sum_probs=79.4
Q ss_pred EEEecchhhHHHHH--cCCCCEEEEEeCCCChhHHhhhHHHHHHHhhcCC--ceEEEEEecCCchhhhHhcCCCc-----
Q psy5679 44 YLIIEKIDDFKQTI--RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG--VEFVKINVENGGGEIAREFEVQA----- 114 (149)
Q Consensus 44 v~~i~~~~~~~~~~--~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~--v~~~~vd~~~~~~~~~~~~~i~~----- 114 (149)
+.+++. ++|++.+ ..+++++|+||++||++|+.+.|.++++++++++ +.|+.||++++ ++++++|+|.+
T Consensus 30 v~~l~~-~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~-~~la~~~~V~~~~~v~ 107 (152)
T cd02962 30 IKYFTP-KTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRF-PNVAEKFRVSTSPLSK 107 (152)
T ss_pred cEEcCH-HHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCC-HHHHHHcCceecCCcC
Confidence 667774 8899988 3467999999999999999999999999999874 99999999999 99999999988
Q ss_pred -ccEEEEEeCCeeeeeeeC
Q psy5679 115 -VPTVIGFRNGDPVDTVVG 132 (149)
Q Consensus 115 -~Pt~~~~~~g~~~~~~~g 132 (149)
+||+++|++|+.+.+..|
T Consensus 108 ~~PT~ilf~~Gk~v~r~~G 126 (152)
T cd02962 108 QLPTIILFQGGKEVARRPY 126 (152)
T ss_pred CCCEEEEEECCEEEEEEec
Confidence 999999999999998886
No 37
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.86 E-value=6.4e-21 Score=118.08 Aligned_cols=97 Identities=25% Similarity=0.517 Sum_probs=86.0
Q ss_pred EEEecchhhHHHHH-cCCCCEEEEEeCCCChhHHhhhHHHHHHHhhcCC---ceEEEEEecCCchhhhHhcCCCcccEEE
Q psy5679 44 YLIIEKIDDFKQTI-RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG---VEFVKINVENGGGEIAREFEVQAVPTVI 119 (149)
Q Consensus 44 v~~i~~~~~~~~~~-~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~---v~~~~vd~~~~~~~~~~~~~i~~~Pt~~ 119 (149)
|.+++. ++|++.+ ..+++++|+||++||++|+.+.|.++++++.+++ +.++.+|++++ +++..+++.++|+++
T Consensus 2 v~~l~~-~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~--~~~~~~~~~~~Pt~~ 78 (104)
T cd02995 2 VKVVVG-KNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN--DVPSEFVVDGFPTIL 78 (104)
T ss_pred eEEEch-hhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch--hhhhhccCCCCCEEE
Confidence 677875 8999988 6679999999999999999999999999999865 89999999988 578899999999999
Q ss_pred EEeCCe--eeeeeeCCCCHHHHHHHH
Q psy5679 120 GFRNGD--PVDTVVGNADQDVIQTLV 143 (149)
Q Consensus 120 ~~~~g~--~~~~~~g~~~~~~l~~~i 143 (149)
+|++|+ ....+.|..+.+.|.+||
T Consensus 79 ~~~~~~~~~~~~~~g~~~~~~l~~fi 104 (104)
T cd02995 79 FFPAGDKSNPIKYEGDRTLEDLIKFI 104 (104)
T ss_pred EEcCCCcCCceEccCCcCHHHHHhhC
Confidence 998887 556788989999988875
No 38
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.86 E-value=1.3e-20 Score=115.69 Aligned_cols=91 Identities=24% Similarity=0.521 Sum_probs=83.9
Q ss_pred HHHHH-cCCCCEEEEEeCCCChhHHhhhHHHHHHHhhcCC-ceEEEEEecCCchhhhHhcCCCcccEEEEEeCCeeeeee
Q psy5679 53 FKQTI-RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENGGGEIAREFEVQAVPTVIGFRNGDPVDTV 130 (149)
Q Consensus 53 ~~~~~-~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~ 130 (149)
++..+ ..+++++|+||++||+.|+.+.+.++++++.+++ +.++.+|+++. +++.+++++.++|+++++++|+.+...
T Consensus 5 ~~~~~~~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~-~~l~~~~~v~~vPt~~i~~~g~~v~~~ 83 (97)
T cd02949 5 LRKLYHESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDED-QEIAEAAGIMGTPTVQFFKDKELVKEI 83 (97)
T ss_pred HHHHHHhCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCC-HHHHHHCCCeeccEEEEEECCeEEEEE
Confidence 44555 7899999999999999999999999999999976 99999999999 999999999999999999999999999
Q ss_pred eCCCCHHHHHHHHH
Q psy5679 131 VGNADQDVIQTLVS 144 (149)
Q Consensus 131 ~g~~~~~~l~~~i~ 144 (149)
.|..+.+++.++|+
T Consensus 84 ~g~~~~~~~~~~l~ 97 (97)
T cd02949 84 SGVKMKSEYREFIE 97 (97)
T ss_pred eCCccHHHHHHhhC
Confidence 99889999988874
No 39
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.86 E-value=3.6e-21 Score=119.54 Aligned_cols=94 Identities=17% Similarity=0.213 Sum_probs=83.0
Q ss_pred hhHHHHHcCCCCEEEEEeCCCChhHHhhhHHH---HHHHhhcCC-ceEEEEEecCC---chhhhHhcCCCcccEEEEEe-
Q psy5679 51 DDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKI---STVSETTSG-VEFVKINVENG---GGEIAREFEVQAVPTVIGFR- 122 (149)
Q Consensus 51 ~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l---~~~~~~~~~-v~~~~vd~~~~---~~~~~~~~~i~~~Pt~~~~~- 122 (149)
+.|.+++.++++++|+||++||++|+.+.+.+ +++++.+.+ +.++.+|++++ ...++++|++.++||+++|+
T Consensus 2 ~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~~~ 81 (104)
T cd02953 2 AALAQALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYLFYGP 81 (104)
T ss_pred HHHHHHHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEECC
Confidence 57788888899999999999999999999887 678888874 99999999873 16889999999999999997
Q ss_pred -CCeeeeeeeCCCCHHHHHHHHH
Q psy5679 123 -NGDPVDTVVGNADQDVIQTLVS 144 (149)
Q Consensus 123 -~g~~~~~~~g~~~~~~l~~~i~ 144 (149)
+|+.+.++.|..+.+++.++|+
T Consensus 82 ~~g~~~~~~~G~~~~~~l~~~l~ 104 (104)
T cd02953 82 GGEPEPLRLPGFLTADEFLEALE 104 (104)
T ss_pred CCCCCCcccccccCHHHHHHHhC
Confidence 7999899999999999998873
No 40
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.85 E-value=1e-20 Score=117.27 Aligned_cols=98 Identities=22% Similarity=0.503 Sum_probs=86.4
Q ss_pred EEEecchhhHHHHH-cCCCCEEEEEeCCCChhHHhhhHHHHHHHhhcC--C-ceEEEEEecC-CchhhhHhcCCCcccEE
Q psy5679 44 YLIIEKIDDFKQTI-RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTS--G-VEFVKINVEN-GGGEIAREFEVQAVPTV 118 (149)
Q Consensus 44 v~~i~~~~~~~~~~-~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~--~-v~~~~vd~~~-~~~~~~~~~~i~~~Pt~ 118 (149)
+.++++ ++|++.+ ..+++++|+||++||++|+.+.+.++++++.++ + +.++.+|+++ + +.++++|+++++|++
T Consensus 2 ~~~l~~-~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~-~~~~~~~~i~~~P~~ 79 (105)
T cd02998 2 VVELTD-SNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEAN-KDLAKKYGVSGFPTL 79 (105)
T ss_pred eEEcch-hcHHHHhcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcc-hhhHHhCCCCCcCEE
Confidence 456765 8999988 566699999999999999999999999999986 3 9999999999 8 999999999999999
Q ss_pred EEEeCC-eeeeeeeCCCCHHHHHHHH
Q psy5679 119 IGFRNG-DPVDTVVGNADQDVIQTLV 143 (149)
Q Consensus 119 ~~~~~g-~~~~~~~g~~~~~~l~~~i 143 (149)
++|.+| +....+.|..+.++|.+||
T Consensus 80 ~~~~~~~~~~~~~~g~~~~~~l~~~i 105 (105)
T cd02998 80 KFFPKGSTEPVKYEGGRDLEDLVKFV 105 (105)
T ss_pred EEEeCCCCCccccCCccCHHHHHhhC
Confidence 999766 5667888888999998875
No 41
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.85 E-value=3.4e-20 Score=124.85 Aligned_cols=101 Identities=17% Similarity=0.381 Sum_probs=87.0
Q ss_pred eEEEecchhhHHHHHc-C--CCCEEEEEeCCCChhHHhhhHHHHHHHhhcCCceEEEEEecCCchhhhHhcCCCcccEEE
Q psy5679 43 AYLIIEKIDDFKQTIR-G--RNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTVI 119 (149)
Q Consensus 43 ~v~~i~~~~~~~~~~~-~--~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~~i~~~Pt~~ 119 (149)
.+.++++.++|.+.+. . +.++||.||++||++|+.+.|.|++++..|+.+.|++||++++ .++.+|+|..+||++
T Consensus 63 ~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~--~l~~~f~v~~vPTll 140 (175)
T cd02987 63 KVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASAT--GASDEFDTDALPALL 140 (175)
T ss_pred eEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccch--hhHHhCCCCCCCEEE
Confidence 4788887689998883 2 3599999999999999999999999999999999999999986 799999999999999
Q ss_pred EEeCCeeeeeeeCC-------CCHHHHHHHHHH
Q psy5679 120 GFRNGDPVDTVVGN-------ADQDVIQTLVSK 145 (149)
Q Consensus 120 ~~~~g~~~~~~~g~-------~~~~~l~~~i~~ 145 (149)
+|++|+.+..+.|. .+.+.|+.+|.+
T Consensus 141 lyk~G~~v~~~vG~~~~~g~~f~~~~le~~L~~ 173 (175)
T cd02987 141 VYKGGELIGNFVRVTEDLGEDFDAEDLESFLVE 173 (175)
T ss_pred EEECCEEEEEEechHHhcCCCCCHHHHHHHHHh
Confidence 99999998877652 456677776654
No 42
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.85 E-value=2.7e-20 Score=117.20 Aligned_cols=94 Identities=17% Similarity=0.341 Sum_probs=83.4
Q ss_pred HHHHHcCCCCEEEEEeCCCChhHHhhhHHHHHHHhhcCCceEEEEEecCCchhhhHhcCCCcccEEEEEeCCeeee--ee
Q psy5679 53 FKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTVIGFRNGDPVD--TV 130 (149)
Q Consensus 53 ~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~--~~ 130 (149)
+.+.+.++..++|+||++||++|+.+.+.+++++..++.+.+..+|.+++ ++++++|++.++||++++++|.... ++
T Consensus 15 ~~~~l~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~~-~~l~~~~~v~~vPt~~i~~~g~~~~~~~~ 93 (113)
T cd02975 15 FFKEMKNPVDLVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDED-KEKAEKYGVERVPTTIFLQDGGKDGGIRY 93 (113)
T ss_pred HHHHhCCCeEEEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCcC-HHHHHHcCCCcCCEEEEEeCCeecceEEE
Confidence 55555677889999999999999999999999999986699999999999 9999999999999999998875544 68
Q ss_pred eCCCCHHHHHHHHHHHh
Q psy5679 131 VGNADQDVIQTLVSKLS 147 (149)
Q Consensus 131 ~g~~~~~~l~~~i~~~~ 147 (149)
.|..+..++.++|..++
T Consensus 94 ~G~~~~~el~~~i~~i~ 110 (113)
T cd02975 94 YGLPAGYEFASLIEDIV 110 (113)
T ss_pred EecCchHHHHHHHHHHH
Confidence 88888999999999875
No 43
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.84 E-value=2.8e-20 Score=116.52 Aligned_cols=98 Identities=21% Similarity=0.458 Sum_probs=83.3
Q ss_pred EEEecchhhHHHHH---cCCCCEEEEEeCCCChhHHhhhHHHHHHHhhcCC--ceEEEEEecC-CchhhhH-hcCCCccc
Q psy5679 44 YLIIEKIDDFKQTI---RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG--VEFVKINVEN-GGGEIAR-EFEVQAVP 116 (149)
Q Consensus 44 v~~i~~~~~~~~~~---~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~--v~~~~vd~~~-~~~~~~~-~~~i~~~P 116 (149)
|.+++. ++|+.++ .++++++|.||++||++|+.+.|.++++++.+++ +.++.||++. . ..++. .++++++|
T Consensus 3 v~~~~~-~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~-~~~~~~~~~v~~~P 80 (109)
T cd02993 3 VVTLSR-AEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQ-REFAKEELQLKSFP 80 (109)
T ss_pred ceeccH-HHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccc-hhhHHhhcCCCcCC
Confidence 667764 8999887 3689999999999999999999999999999975 8999999997 5 67776 59999999
Q ss_pred EEEEEeCC-eeeeeeeCC-CCHHHHHHHH
Q psy5679 117 TVIGFRNG-DPVDTVVGN-ADQDVIQTLV 143 (149)
Q Consensus 117 t~~~~~~g-~~~~~~~g~-~~~~~l~~~i 143 (149)
|+++|.+| +....+.|. .+.+.|.+||
T Consensus 81 ti~~f~~~~~~~~~y~g~~~~~~~l~~f~ 109 (109)
T cd02993 81 TILFFPKNSRQPIKYPSEQRDVDSLLMFV 109 (109)
T ss_pred EEEEEcCCCCCceeccCCCCCHHHHHhhC
Confidence 99999654 556688884 6888888875
No 44
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.84 E-value=5.9e-20 Score=114.08 Aligned_cols=93 Identities=29% Similarity=0.469 Sum_probs=82.1
Q ss_pred hhHHHHHcCCCCEEEEEeCCCChhHHhhhHHHHHHHhhcC---C-ceEEEEEecCCchhhhHhcCCCcccEEEEEeCCee
Q psy5679 51 DDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTS---G-VEFVKINVENGGGEIAREFEVQAVPTVIGFRNGDP 126 (149)
Q Consensus 51 ~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~---~-v~~~~vd~~~~~~~~~~~~~i~~~Pt~~~~~~g~~ 126 (149)
++|++. .++++++|.||++||++|+.+.|.++++++.++ . +.++.+|+++. +.++++|+|.++|++++|++|..
T Consensus 7 ~~~~~~-~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~-~~~~~~~~I~~~Pt~~l~~~~~~ 84 (104)
T cd03000 7 DSFKDV-RKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAY-SSIASEFGVRGYPTIKLLKGDLA 84 (104)
T ss_pred hhhhhh-ccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccC-HhHHhhcCCccccEEEEEcCCCc
Confidence 567764 457899999999999999999999999999884 2 88999999999 99999999999999999977754
Q ss_pred eeeeeCCCCHHHHHHHHHHH
Q psy5679 127 VDTVVGNADQDVIQTLVSKL 146 (149)
Q Consensus 127 ~~~~~g~~~~~~l~~~i~~~ 146 (149)
..+.|..+.++|.+++++.
T Consensus 85 -~~~~G~~~~~~l~~~~~~~ 103 (104)
T cd03000 85 -YNYRGPRTKDDIVEFANRV 103 (104)
T ss_pred -eeecCCCCHHHHHHHHHhh
Confidence 6788888999999999875
No 45
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.84 E-value=3.2e-20 Score=113.80 Aligned_cols=95 Identities=24% Similarity=0.529 Sum_probs=85.0
Q ss_pred ecchhhHHHHHcCCCCEEEEEeCCCChhHHhhhHHHHHHHhhc--CC-ceEEEEEecCCchhhhHhcCCCcccEEEEEeC
Q psy5679 47 IEKIDDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETT--SG-VEFVKINVENGGGEIAREFEVQAVPTVIGFRN 123 (149)
Q Consensus 47 i~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~--~~-v~~~~vd~~~~~~~~~~~~~i~~~Pt~~~~~~ 123 (149)
++ .++|.+.+.++++++|+||++||++|+.+.+.++++++.+ .+ +.|+.+|++++ ..++++|+|.++|+++++.+
T Consensus 3 l~-~~~~~~~i~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~i~~~Pt~~~~~~ 80 (101)
T cd02961 3 LT-DDNFDELVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTAN-NDLCSEYGVRGYPTIKLFPN 80 (101)
T ss_pred cc-HHHHHHHHhCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccch-HHHHHhCCCCCCCEEEEEcC
Confidence 45 4799999977779999999999999999999999999999 34 99999999998 99999999999999999977
Q ss_pred C-eeeeeeeCCCCHHHHHHHH
Q psy5679 124 G-DPVDTVVGNADQDVIQTLV 143 (149)
Q Consensus 124 g-~~~~~~~g~~~~~~l~~~i 143 (149)
| +....+.|..+.+++.+|+
T Consensus 81 ~~~~~~~~~g~~~~~~i~~~~ 101 (101)
T cd02961 81 GSKEPVKYEGPRTLESLVEFI 101 (101)
T ss_pred CCcccccCCCCcCHHHHHhhC
Confidence 7 7777888888888888774
No 46
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.83 E-value=2.1e-19 Score=114.43 Aligned_cols=98 Identities=16% Similarity=0.362 Sum_probs=80.9
Q ss_pred EEEecchhhHHHHHcCCCCEEEEEeCCCChhHHhhhHHHHHHHhhcCCceEEEEEecCCch-----------hhhHhcC-
Q psy5679 44 YLIIEKIDDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGG-----------EIAREFE- 111 (149)
Q Consensus 44 v~~i~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~-----------~~~~~~~- 111 (149)
..+++ .+++.+.+.+++.++|+|+++|||+|+.+.|.|++++++. ++.++.+|++.+ . ++.++|+
T Consensus 8 ~~~it-~~~~~~~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~-~~~~y~vdvd~~-~~~~~~~~~~~~~~~~~~~i 84 (122)
T TIGR01295 8 LEVTT-VVRALEALDKKETATFFIGRKTCPYCRKFSGTLSGVVAQT-KAPIYYIDSENN-GSFEMSSLNDLTAFRSRFGI 84 (122)
T ss_pred ceecC-HHHHHHHHHcCCcEEEEEECCCChhHHHHhHHHHHHHHhc-CCcEEEEECCCc-cCcCcccHHHHHHHHHHcCC
Confidence 34455 5889999988999999999999999999999999999984 477888888754 2 4456665
Q ss_pred ---CCcccEEEEEeCCeeeeeeeCC-CCHHHHHHHHH
Q psy5679 112 ---VQAVPTVIGFRNGDPVDTVVGN-ADQDVIQTLVS 144 (149)
Q Consensus 112 ---i~~~Pt~~~~~~g~~~~~~~g~-~~~~~l~~~i~ 144 (149)
+.++||+++|++|+.+.+..|. .+.++|.+++.
T Consensus 85 ~~~i~~~PT~v~~k~Gk~v~~~~G~~~~~~~l~~~~~ 121 (122)
T TIGR01295 85 PTSFMGTPTFVHITDGKQVSVRCGSSTTAQELQDIAA 121 (122)
T ss_pred cccCCCCCEEEEEeCCeEEEEEeCCCCCHHHHHHHhh
Confidence 5569999999999999999984 67889888763
No 47
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.83 E-value=1.9e-19 Score=108.52 Aligned_cols=91 Identities=34% Similarity=0.737 Sum_probs=83.4
Q ss_pred hHHHHHcCCCCEEEEEeCCCChhHHhhhHHHHHHHhhcCCceEEEEEecCCchhhhHhcCCCcccEEEEEeCCeeeeeee
Q psy5679 52 DFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTVIGFRNGDPVDTVV 131 (149)
Q Consensus 52 ~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~ 131 (149)
+|++.+..+++++|+||++||++|+.+.+.++++++..+++.++.+|++.. ..+++.|++.++|+++++.+|+.+..+.
T Consensus 2 ~~~~~~~~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~v~~~P~~~~~~~g~~~~~~~ 80 (93)
T cd02947 2 EFEELIKSAKPVVVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDEN-PELAEEYGVRSIPTFLFFKNGKEVDRVV 80 (93)
T ss_pred chHHHHhcCCcEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECCCC-hhHHHhcCcccccEEEEEECCEEEEEEe
Confidence 567777666999999999999999999999999999966699999999999 9999999999999999999999999999
Q ss_pred CCCCHHHHHHHH
Q psy5679 132 GNADQDVIQTLV 143 (149)
Q Consensus 132 g~~~~~~l~~~i 143 (149)
|..+.+.|.++|
T Consensus 81 g~~~~~~l~~~i 92 (93)
T cd02947 81 GADPKEELEEFL 92 (93)
T ss_pred cCCCHHHHHHHh
Confidence 988888888876
No 48
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.81 E-value=9e-19 Score=119.45 Aligned_cols=98 Identities=22% Similarity=0.427 Sum_probs=83.8
Q ss_pred eEEEecchhhHHHHH-cC--CCCEEEEEeCCCChhHHhhhHHHHHHHhhcCCceEEEEEecCCchhhhHhcCCCcccEEE
Q psy5679 43 AYLIIEKIDDFKQTI-RG--RNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTVI 119 (149)
Q Consensus 43 ~v~~i~~~~~~~~~~-~~--~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~~i~~~Pt~~ 119 (149)
.+.+++. ++|...+ .. +.+|||.||++||++|+.+.+.|++++++|+.+.|++||++.. ...|++.++||++
T Consensus 83 ~v~eis~-~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad~~----~~~~~i~~lPTll 157 (192)
T cd02988 83 EVYEISK-PDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFPDTKFVKIISTQC----IPNYPDKNLPTIL 157 (192)
T ss_pred eEEEeCH-HHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCCCCEEEEEEhHHh----HhhCCCCCCCEEE
Confidence 4888875 7777666 32 4689999999999999999999999999999899999999876 5799999999999
Q ss_pred EEeCCeeeeeeeC-------CCCHHHHHHHHHH
Q psy5679 120 GFRNGDPVDTVVG-------NADQDVIQTLVSK 145 (149)
Q Consensus 120 ~~~~g~~~~~~~g-------~~~~~~l~~~i~~ 145 (149)
+|++|+.+..+.| ..+.++|+.+|.+
T Consensus 158 iyk~G~~v~~ivG~~~~gg~~~~~~~lE~~L~~ 190 (192)
T cd02988 158 VYRNGDIVKQFIGLLEFGGMNTTMEDLEWLLVQ 190 (192)
T ss_pred EEECCEEEEEEeCchhhCCCCCCHHHHHHHHHh
Confidence 9999999988876 3566777777654
No 49
>KOG0190|consensus
Probab=99.81 E-value=1.6e-19 Score=136.26 Aligned_cols=103 Identities=33% Similarity=0.601 Sum_probs=96.2
Q ss_pred eEEEecchhhHHHHHcCCCCEEEEEeCCCChhHHhhhHHHHHHHhhcCC----ceEEEEEecCCchhhhHhcCCCcccEE
Q psy5679 43 AYLIIEKIDDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG----VEFVKINVENGGGEIAREFEVQAVPTV 118 (149)
Q Consensus 43 ~v~~i~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~----v~~~~vd~~~~~~~~~~~~~i~~~Pt~ 118 (149)
.|..+++ ++|++.+..+..++|.||||||++|+++.|.+++.+..... +.+++||++++ .++|.+|+|+++||+
T Consensus 26 ~Vl~Lt~-dnf~~~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~-~~~~~~y~v~gyPTl 103 (493)
T KOG0190|consen 26 DVLVLTK-DNFKETINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEE-SDLASKYEVRGYPTL 103 (493)
T ss_pred ceEEEec-ccHHHHhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchh-hhhHhhhcCCCCCeE
Confidence 3888986 99999999999999999999999999999999999988764 89999999999 999999999999999
Q ss_pred EEEeCCeeeeeeeCCCCHHHHHHHHHHHh
Q psy5679 119 IGFRNGDPVDTVVGNADQDVIQTLVSKLS 147 (149)
Q Consensus 119 ~~~~~g~~~~~~~g~~~~~~l~~~i~~~~ 147 (149)
-+|+||+....|.|..+.+.+..|+.+..
T Consensus 104 kiFrnG~~~~~Y~G~r~adgIv~wl~kq~ 132 (493)
T KOG0190|consen 104 KIFRNGRSAQDYNGPREADGIVKWLKKQS 132 (493)
T ss_pred EEEecCCcceeccCcccHHHHHHHHHhcc
Confidence 99999998678999999999999998754
No 50
>PTZ00102 disulphide isomerase; Provisional
Probab=99.81 E-value=7.5e-19 Score=134.96 Aligned_cols=104 Identities=22% Similarity=0.408 Sum_probs=93.5
Q ss_pred eEEEecchhhHHHHH-cCCCCEEEEEeCCCChhHHhhhHHHHHHHhhcCC---ceEEEEEecCCchhhhHhcCCCcccEE
Q psy5679 43 AYLIIEKIDDFKQTI-RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG---VEFVKINVENGGGEIAREFEVQAVPTV 118 (149)
Q Consensus 43 ~v~~i~~~~~~~~~~-~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~---v~~~~vd~~~~~~~~~~~~~i~~~Pt~ 118 (149)
++..+.+ ++|++.+ ..+++++|+||++||++|+.+.|.++++++.+++ +.++.+|++.+ ...++.++++++||+
T Consensus 358 ~v~~l~~-~~f~~~v~~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~-~~~~~~~~v~~~Pt~ 435 (477)
T PTZ00102 358 PVKVVVG-NTFEEIVFKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTAN-ETPLEEFSWSAFPTI 435 (477)
T ss_pred CeEEecc-cchHHHHhcCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCC-ccchhcCCCcccCeE
Confidence 4888876 9999986 7899999999999999999999999999998864 88999999999 888999999999999
Q ss_pred EEEeCCeee-eeeeCCCCHHHHHHHHHHHhc
Q psy5679 119 IGFRNGDPV-DTVVGNADQDVIQTLVSKLSQ 148 (149)
Q Consensus 119 ~~~~~g~~~-~~~~g~~~~~~l~~~i~~~~~ 148 (149)
++|++|+.+ ..+.|..+.+.+.+||+++..
T Consensus 436 ~~~~~~~~~~~~~~G~~~~~~l~~~i~~~~~ 466 (477)
T PTZ00102 436 LFVKAGERTPIPYEGERTVEGFKEFVNKHAT 466 (477)
T ss_pred EEEECCCcceeEecCcCCHHHHHHHHHHcCC
Confidence 999877654 478999999999999998764
No 51
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.80 E-value=7.2e-19 Score=112.60 Aligned_cols=98 Identities=23% Similarity=0.465 Sum_probs=82.5
Q ss_pred hhHHHHHcCC-CCEEEEEeCCCChhHHhhhHHHH---HHHhhcCC-ceEEEEEecCC------------chhhhHhcCCC
Q psy5679 51 DDFKQTIRGR-NPVLAYFFKPSCGFCKQLEPKIS---TVSETTSG-VEFVKINVENG------------GGEIAREFEVQ 113 (149)
Q Consensus 51 ~~~~~~~~~~-~~~vv~f~~~~C~~C~~~~~~l~---~~~~~~~~-v~~~~vd~~~~------------~~~~~~~~~i~ 113 (149)
+.++++..++ ++++|.||++||++|+.+.+.+. ++.+.+.+ +.++.+|++.. ..+++.+|++.
T Consensus 4 ~~~~~a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~ 83 (125)
T cd02951 4 EDLAEAAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVR 83 (125)
T ss_pred HHHHHHHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCCc
Confidence 5677777777 99999999999999999999874 56555544 88899998753 15789999999
Q ss_pred cccEEEEEe-C-CeeeeeeeCCCCHHHHHHHHHHHhc
Q psy5679 114 AVPTVIGFR-N-GDPVDTVVGNADQDVIQTLVSKLSQ 148 (149)
Q Consensus 114 ~~Pt~~~~~-~-g~~~~~~~g~~~~~~l~~~i~~~~~ 148 (149)
++||++++. + |+.+.+..|..+.+++.++|+.++.
T Consensus 84 ~~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~~ 120 (125)
T cd02951 84 FTPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEYVQE 120 (125)
T ss_pred cccEEEEEcCCCCceeEEecCCCCHHHHHHHHHHHHh
Confidence 999999995 4 6999999999899999999998765
No 52
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.79 E-value=1.2e-18 Score=109.09 Aligned_cols=98 Identities=14% Similarity=0.232 Sum_probs=81.1
Q ss_pred EEEecchhhHHHHHcCCCCEEEEEeC--CCCh---hHHhhhHHHHHHHhhcCCceEEEEEec-----CCchhhhHhcCCC
Q psy5679 44 YLIIEKIDDFKQTIRGRNPVLAYFFK--PSCG---FCKQLEPKISTVSETTSGVEFVKINVE-----NGGGEIAREFEVQ 113 (149)
Q Consensus 44 v~~i~~~~~~~~~~~~~~~~vv~f~~--~~C~---~C~~~~~~l~~~~~~~~~v~~~~vd~~-----~~~~~~~~~~~i~ 113 (149)
++.+++ ++|++.+.+.+.++|.||+ |||+ .|..+.|.+.+.+.. +.++.||++ ++ .+++++|+|+
T Consensus 3 ~v~L~~-~nF~~~v~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~~---v~lakVd~~d~~~~~~-~~L~~~y~I~ 77 (116)
T cd03007 3 CVDLDT-VTFYKVIPKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATDD---LLVAEVGIKDYGEKLN-MELGERYKLD 77 (116)
T ss_pred eeECCh-hhHHHHHhcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcCc---eEEEEEecccccchhh-HHHHHHhCCC
Confidence 566775 9999999999999999999 8888 777776666554432 889999994 56 7899999999
Q ss_pred --cccEEEEEeCCe--eeeeeeCC-CCHHHHHHHHHHH
Q psy5679 114 --AVPTVIGFRNGD--PVDTVVGN-ADQDVIQTLVSKL 146 (149)
Q Consensus 114 --~~Pt~~~~~~g~--~~~~~~g~-~~~~~l~~~i~~~ 146 (149)
++||+.+|++|. ....|.|. .+.+.|.+||++.
T Consensus 78 ~~gyPTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 78 KESYPVIYLFHGGDFENPVPYSGADVTVDALQRFLKGN 115 (116)
T ss_pred cCCCCEEEEEeCCCcCCCccCCCCcccHHHHHHHHHhc
Confidence 999999999885 33578896 9999999999874
No 53
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.79 E-value=1.6e-18 Score=132.41 Aligned_cols=103 Identities=30% Similarity=0.574 Sum_probs=93.2
Q ss_pred EEEecchhhHHHHHcCCCCEEEEEeCCCChhHHhhhHHHHHHHhhcCC----ceEEEEEecCCchhhhHhcCCCcccEEE
Q psy5679 44 YLIIEKIDDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG----VEFVKINVENGGGEIAREFEVQAVPTVI 119 (149)
Q Consensus 44 v~~i~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~----v~~~~vd~~~~~~~~~~~~~i~~~Pt~~ 119 (149)
+..++. ++|++++.++++++|+||++||++|+.+.|.+.++++.+.+ +.|+.|||+.+ .+++++|+|.++||++
T Consensus 3 v~~l~~-~~~~~~i~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~-~~l~~~~~i~~~Pt~~ 80 (462)
T TIGR01130 3 VLVLTK-DNFDDFIKSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEE-KDLAQKYGVSGYPTLK 80 (462)
T ss_pred ceECCH-HHHHHHHhcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCc-HHHHHhCCCccccEEE
Confidence 566764 89999998888999999999999999999999998887642 89999999999 9999999999999999
Q ss_pred EEeCCee-eeeeeCCCCHHHHHHHHHHHhc
Q psy5679 120 GFRNGDP-VDTVVGNADQDVIQTLVSKLSQ 148 (149)
Q Consensus 120 ~~~~g~~-~~~~~g~~~~~~l~~~i~~~~~ 148 (149)
+|++|+. +..+.|..+.+.+.+|+.+.+.
T Consensus 81 ~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~ 110 (462)
T TIGR01130 81 IFRNGEDSVSDYNGPRDADGIVKYMKKQSG 110 (462)
T ss_pred EEeCCccceeEecCCCCHHHHHHHHHHhcC
Confidence 9999987 7788999999999999988754
No 54
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.79 E-value=2.6e-18 Score=108.30 Aligned_cols=82 Identities=17% Similarity=0.412 Sum_probs=71.3
Q ss_pred eEEEecchhhHHHHH-cCCCCEEEEEeCCCChhHHhhhHHHHHHHhhcC---C-ceEEEEEec--CCchhhhHhcCCCcc
Q psy5679 43 AYLIIEKIDDFKQTI-RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTS---G-VEFVKINVE--NGGGEIAREFEVQAV 115 (149)
Q Consensus 43 ~v~~i~~~~~~~~~~-~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~---~-v~~~~vd~~--~~~~~~~~~~~i~~~ 115 (149)
++++++ .++|++.+ ..+++++|+||++||++|+.+.|.++++++.++ + +.|+.+|++ .+ ..++++|+++++
T Consensus 2 ~v~~l~-~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~-~~~~~~~~i~~~ 79 (114)
T cd02992 2 PVIVLD-AASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEEN-VALCRDFGVTGY 79 (114)
T ss_pred CeEECC-HHhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhh-HHHHHhCCCCCC
Confidence 367777 48999998 556899999999999999999999999999765 3 889999975 45 789999999999
Q ss_pred cEEEEEeCCee
Q psy5679 116 PTVIGFRNGDP 126 (149)
Q Consensus 116 Pt~~~~~~g~~ 126 (149)
|++++|++|+.
T Consensus 80 Pt~~lf~~~~~ 90 (114)
T cd02992 80 PTLRYFPPFSK 90 (114)
T ss_pred CEEEEECCCCc
Confidence 99999988873
No 55
>PTZ00062 glutaredoxin; Provisional
Probab=99.78 E-value=3.1e-18 Score=117.34 Aligned_cols=91 Identities=13% Similarity=0.180 Sum_probs=82.0
Q ss_pred cchhhHHHHHcC-CCCEEEEEeCCCChhHHhhhHHHHHHHhhcCCceEEEEEecCCchhhhHhcCCCcccEEEEEeCCee
Q psy5679 48 EKIDDFKQTIRG-RNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTVIGFRNGDP 126 (149)
Q Consensus 48 ~~~~~~~~~~~~-~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~~i~~~Pt~~~~~~g~~ 126 (149)
++.+++.+.+.. .+.++++||++||++|+.+.+.+++++++|+++.|+.||.+ |+|.++|++++|++|+.
T Consensus 4 ~~~ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~d---------~~V~~vPtfv~~~~g~~ 74 (204)
T PTZ00062 4 IKKEEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFPSLEFYVVNLA---------DANNEYGVFEFYQNSQL 74 (204)
T ss_pred CCHHHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCCCcEEEEEccc---------cCcccceEEEEEECCEE
Confidence 356888888854 48899999999999999999999999999999999999966 89999999999999999
Q ss_pred eeeeeCCCCHHHHHHHHHHHhc
Q psy5679 127 VDTVVGNADQDVIQTLVSKLSQ 148 (149)
Q Consensus 127 ~~~~~g~~~~~~l~~~i~~~~~ 148 (149)
+.++.| .+..+|..+++++.+
T Consensus 75 i~r~~G-~~~~~~~~~~~~~~~ 95 (204)
T PTZ00062 75 INSLEG-CNTSTLVSFIRGWAQ 95 (204)
T ss_pred EeeeeC-CCHHHHHHHHHHHcC
Confidence 999999 789999999887653
No 56
>PTZ00102 disulphide isomerase; Provisional
Probab=99.78 E-value=2.4e-18 Score=132.17 Aligned_cols=102 Identities=27% Similarity=0.537 Sum_probs=92.6
Q ss_pred EEEecchhhHHHHHcCCCCEEEEEeCCCChhHHhhhHHHHHHHhhcC----CceEEEEEecCCchhhhHhcCCCcccEEE
Q psy5679 44 YLIIEKIDDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTS----GVEFVKINVENGGGEIAREFEVQAVPTVI 119 (149)
Q Consensus 44 v~~i~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~----~v~~~~vd~~~~~~~~~~~~~i~~~Pt~~ 119 (149)
+..++. ++|++.+.+++.++|+||++||++|+.+.|.++++++.+. ++.++.+|++++ ..++++|+|.++||++
T Consensus 34 v~~l~~-~~f~~~i~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~-~~l~~~~~i~~~Pt~~ 111 (477)
T PTZ00102 34 VTVLTD-STFDKFITENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEE-MELAQEFGVRGYPTIK 111 (477)
T ss_pred cEEcch-hhHHHHHhcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCC-HHHHHhcCCCcccEEE
Confidence 777774 8999999888999999999999999999999999887653 399999999999 9999999999999999
Q ss_pred EEeCCeeeeeeeCCCCHHHHHHHHHHHhc
Q psy5679 120 GFRNGDPVDTVVGNADQDVIQTLVSKLSQ 148 (149)
Q Consensus 120 ~~~~g~~~~~~~g~~~~~~l~~~i~~~~~ 148 (149)
+|++|+.+ .+.|..+.+.+.+|+++.+.
T Consensus 112 ~~~~g~~~-~y~g~~~~~~l~~~l~~~~~ 139 (477)
T PTZ00102 112 FFNKGNPV-NYSGGRTADGIVSWIKKLTG 139 (477)
T ss_pred EEECCceE-EecCCCCHHHHHHHHHHhhC
Confidence 99999887 88998999999999998764
No 57
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.77 E-value=5e-18 Score=128.53 Aligned_cols=103 Identities=19% Similarity=0.411 Sum_probs=87.2
Q ss_pred eEEEecchhhHHHHHc---CCCCEEEEEeCCCChhHHhhhHHHHHHHhhcCC--ceEEEEEecCCchhhh-HhcCCCccc
Q psy5679 43 AYLIIEKIDDFKQTIR---GRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG--VEFVKINVENGGGEIA-REFEVQAVP 116 (149)
Q Consensus 43 ~v~~i~~~~~~~~~~~---~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~--v~~~~vd~~~~~~~~~-~~~~i~~~P 116 (149)
.|++++. ++|++.+. .+++++|.||++||++|+.+.|.|+++++++++ +.|+.||+|.+...++ ++|+|.++|
T Consensus 352 ~Vv~L~~-~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I~~~P 430 (463)
T TIGR00424 352 NVVSLSR-PGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFP 430 (463)
T ss_pred CeEECCH-HHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCCCccc
Confidence 4888885 89999983 899999999999999999999999999999975 8999999997612454 789999999
Q ss_pred EEEEEeCCee-eeeee-CCCCHHHHHHHHHHH
Q psy5679 117 TVIGFRNGDP-VDTVV-GNADQDVIQTLVSKL 146 (149)
Q Consensus 117 t~~~~~~g~~-~~~~~-g~~~~~~l~~~i~~~ 146 (149)
|+++|++|+. ...|. |..+.+.|..||+.+
T Consensus 431 Tii~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~~ 462 (463)
T TIGR00424 431 TILFFPKHSSRPIKYPSEKRDVDSLMSFVNLL 462 (463)
T ss_pred eEEEEECCCCCceeCCCCCCCHHHHHHHHHhh
Confidence 9999988852 23565 578999999999864
No 58
>PLN02309 5'-adenylylsulfate reductase
Probab=99.77 E-value=7.5e-18 Score=127.51 Aligned_cols=102 Identities=21% Similarity=0.466 Sum_probs=87.8
Q ss_pred eEEEecchhhHHHHH---cCCCCEEEEEeCCCChhHHhhhHHHHHHHhhcCC--ceEEEEEec-CCchhhhH-hcCCCcc
Q psy5679 43 AYLIIEKIDDFKQTI---RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG--VEFVKINVE-NGGGEIAR-EFEVQAV 115 (149)
Q Consensus 43 ~v~~i~~~~~~~~~~---~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~--v~~~~vd~~-~~~~~~~~-~~~i~~~ 115 (149)
.|.+++. ++|++++ ..+++++|+||++||++|+.+.|.|+++++.+.+ +.|+.+|++ .+ .+++. +|+|.++
T Consensus 346 ~Vv~Lt~-~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~-~~la~~~~~I~~~ 423 (457)
T PLN02309 346 NVVALSR-AGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQ-KEFAKQELQLGSF 423 (457)
T ss_pred CcEECCH-HHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcc-hHHHHhhCCCcee
Confidence 4788875 8999887 5899999999999999999999999999999865 999999999 77 78886 6999999
Q ss_pred cEEEEEeCCee-eeeee-CCCCHHHHHHHHHHH
Q psy5679 116 PTVIGFRNGDP-VDTVV-GNADQDVIQTLVSKL 146 (149)
Q Consensus 116 Pt~~~~~~g~~-~~~~~-g~~~~~~l~~~i~~~ 146 (149)
||+++|++|.. ...|. |..+.+.|..||+++
T Consensus 424 PTil~f~~g~~~~v~Y~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 424 PTILLFPKNSSRPIKYPSEKRDVDSLLSFVNSL 456 (457)
T ss_pred eEEEEEeCCCCCeeecCCCCcCHHHHHHHHHHh
Confidence 99999987653 23565 458999999999875
No 59
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.76 E-value=1.1e-17 Score=103.51 Aligned_cols=88 Identities=15% Similarity=0.295 Sum_probs=79.3
Q ss_pred CCCCEEEEEeCCCChhHHhhhHHHHHHHhhcCC-ceEEEEEecCCchhhhHhcCCC--cccEEEEEeC--CeeeeeeeCC
Q psy5679 59 GRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENGGGEIAREFEVQ--AVPTVIGFRN--GDPVDTVVGN 133 (149)
Q Consensus 59 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~~~~~~~~~~i~--~~Pt~~~~~~--g~~~~~~~g~ 133 (149)
.++++++.|+++||++|..+.+.++++++++++ +.|+.+|++++ +.+++.|++. ++|+++++++ |+......|.
T Consensus 11 ~~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~-~~~~~~~~i~~~~~P~~~~~~~~~~~k~~~~~~~ 89 (103)
T cd02982 11 SGKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDF-GRHLEYFGLKEEDLPVIAIINLSDGKKYLMPEEE 89 (103)
T ss_pred cCCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhh-HHHHHHcCCChhhCCEEEEEecccccccCCCccc
Confidence 378999999999999999999999999999988 99999999999 9999999999 9999999987 6665555565
Q ss_pred CCHHHHHHHHHHHh
Q psy5679 134 ADQDVIQTLVSKLS 147 (149)
Q Consensus 134 ~~~~~l~~~i~~~~ 147 (149)
.+.+.|.+||++++
T Consensus 90 ~~~~~l~~fi~~~~ 103 (103)
T cd02982 90 LTAESLEEFVEDFL 103 (103)
T ss_pred cCHHHHHHHHHhhC
Confidence 68999999998753
No 60
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.76 E-value=1.3e-17 Score=105.16 Aligned_cols=95 Identities=14% Similarity=0.370 Sum_probs=75.5
Q ss_pred ecchhhHHHHHc--CCCCEEEEEeC-------CCChhHHhhhHHHHHHHhhcCC-ceEEEEEecCC------chhhhHhc
Q psy5679 47 IEKIDDFKQTIR--GRNPVLAYFFK-------PSCGFCKQLEPKISTVSETTSG-VEFVKINVENG------GGEIAREF 110 (149)
Q Consensus 47 i~~~~~~~~~~~--~~~~~vv~f~~-------~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~------~~~~~~~~ 110 (149)
+.+.++|.+.+. ++++++|.||+ +||++|+.+.|.+++++.++++ +.|+.||+++. ..++..++
T Consensus 6 ~~~~~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~ 85 (119)
T cd02952 6 VRGYEEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDP 85 (119)
T ss_pred ccCHHHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhcc
Confidence 456788888883 37899999999 9999999999999999999995 99999999763 15899999
Q ss_pred CCC-cccEEEEEeCCeeeeeeeCCCCHHHHHHH
Q psy5679 111 EVQ-AVPTVIGFRNGDPVDTVVGNADQDVIQTL 142 (149)
Q Consensus 111 ~i~-~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~ 142 (149)
+|. ++||++++++|+.+.... ..+.+.+..+
T Consensus 86 ~I~~~iPT~~~~~~~~~l~~~~-c~~~~~~~~~ 117 (119)
T cd02952 86 KLTTGVPTLLRWKTPQRLVEDE-CLQADLVEMF 117 (119)
T ss_pred CcccCCCEEEEEcCCceecchh-hcCHHHHHHh
Confidence 998 999999998775432111 1355555444
No 61
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.74 E-value=3.8e-17 Score=96.99 Aligned_cols=80 Identities=25% Similarity=0.469 Sum_probs=72.0
Q ss_pred EEEEEeCCCChhHHhhhHHHHHHHhhcCC-ceEEEEEecCCchhhhHhcCCCcccEEEEEeCCeeeeeeeCCCCHHHHHH
Q psy5679 63 VLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENGGGEIAREFEVQAVPTVIGFRNGDPVDTVVGNADQDVIQT 141 (149)
Q Consensus 63 ~vv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~ 141 (149)
.+..||++||++|+.+.+.++++++.++. +.+..+|.++. ++++++|++.++|++++ +|+. ++.|..+.+++.+
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~-~~~~~~~~v~~vPt~~~--~g~~--~~~G~~~~~~l~~ 76 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMEN-PQKAMEYGIMAVPAIVI--NGDV--EFIGAPTKEELVE 76 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccC-HHHHHHcCCccCCEEEE--CCEE--EEecCCCHHHHHH
Confidence 46789999999999999999999999876 99999999999 99999999999999986 8873 7888789999999
Q ss_pred HHHHHh
Q psy5679 142 LVSKLS 147 (149)
Q Consensus 142 ~i~~~~ 147 (149)
+|++.+
T Consensus 77 ~l~~~~ 82 (82)
T TIGR00411 77 AIKKRL 82 (82)
T ss_pred HHHhhC
Confidence 998753
No 62
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.72 E-value=1.2e-16 Score=111.16 Aligned_cols=88 Identities=20% Similarity=0.359 Sum_probs=76.3
Q ss_pred CCCCEEEEEeC---CCChhHHhhhHHHHHHHhhcCC--ceEEEEEecCCchhhhHhcCCCcccEEEEEeCCeeee-eeeC
Q psy5679 59 GRNPVLAYFFK---PSCGFCKQLEPKISTVSETTSG--VEFVKINVENGGGEIAREFEVQAVPTVIGFRNGDPVD-TVVG 132 (149)
Q Consensus 59 ~~~~~vv~f~~---~~C~~C~~~~~~l~~~~~~~~~--v~~~~vd~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~-~~~g 132 (149)
++...++.|++ +||++|+.+.|.++++++.+++ +.++.+|.+++ ++++++|+|.++||+++|++|+.+. ++.|
T Consensus 18 ~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~-~~l~~~~~V~~~Pt~~~f~~g~~~~~~~~G 96 (215)
T TIGR02187 18 KNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPED-KEEAEKYGVERVPTTIILEEGKDGGIRYTG 96 (215)
T ss_pred CCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCccc-HHHHHHcCCCccCEEEEEeCCeeeEEEEee
Confidence 44555777888 9999999999999999999976 45666666688 9999999999999999999999974 8899
Q ss_pred CCCHHHHHHHHHHHh
Q psy5679 133 NADQDVIQTLVSKLS 147 (149)
Q Consensus 133 ~~~~~~l~~~i~~~~ 147 (149)
..+.+++.+||+.++
T Consensus 97 ~~~~~~l~~~i~~~~ 111 (215)
T TIGR02187 97 IPAGYEFAALIEDIV 111 (215)
T ss_pred cCCHHHHHHHHHHHH
Confidence 889999999998874
No 63
>KOG0190|consensus
Probab=99.71 E-value=8.6e-17 Score=121.57 Aligned_cols=100 Identities=21% Similarity=0.452 Sum_probs=86.8
Q ss_pred eEEEecchhhHHHHH-cCCCCEEEEEeCCCChhHHhhhHHHHHHHhhcCC---ceEEEEEecCCchhhhHhcCCCcccEE
Q psy5679 43 AYLIIEKIDDFKQTI-RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG---VEFVKINVENGGGEIAREFEVQAVPTV 118 (149)
Q Consensus 43 ~v~~i~~~~~~~~~~-~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~---v~~~~vd~~~~~~~~~~~~~i~~~Pt~ 118 (149)
+|..+.. ++|++++ ..++.|+|.||+|||++|+++.|.++++++.+++ +.++++|.+.| ++. ...+.++|||
T Consensus 367 pVkvvVg-knfd~iv~de~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDaTaN--d~~-~~~~~~fPTI 442 (493)
T KOG0190|consen 367 PVKVVVG-KNFDDIVLDEGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDATAN--DVP-SLKVDGFPTI 442 (493)
T ss_pred CeEEEee-cCHHHHhhccccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEeccccc--cCc-cccccccceE
Confidence 4888886 9999999 8999999999999999999999999999999987 99999999998 443 4567779999
Q ss_pred EEEeCCe--eeeeeeCCCCHHHHHHHHHHH
Q psy5679 119 IGFRNGD--PVDTVVGNADQDVIQTLVSKL 146 (149)
Q Consensus 119 ~~~~~g~--~~~~~~g~~~~~~l~~~i~~~ 146 (149)
.+++.|. ....|.|..+.+++..+|.+.
T Consensus 443 ~~~pag~k~~pv~y~g~R~le~~~~fi~~~ 472 (493)
T KOG0190|consen 443 LFFPAGHKSNPVIYNGDRTLEDLKKFIKKS 472 (493)
T ss_pred EEecCCCCCCCcccCCCcchHHHHhhhccC
Confidence 9997665 334788889999999998764
No 64
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.69 E-value=1.2e-16 Score=101.09 Aligned_cols=96 Identities=24% Similarity=0.445 Sum_probs=70.6
Q ss_pred hhHHHHHcCCCCEEEEEeCCCChhHHhhhHHHHHHHhhcCC-ceEEEEEecCCchhhhHhcCCCc--ccEEEEE-eCCee
Q psy5679 51 DDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENGGGEIAREFEVQA--VPTVIGF-RNGDP 126 (149)
Q Consensus 51 ~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~~~~~~~~~~i~~--~Pt~~~~-~~g~~ 126 (149)
+.++.+..++++++|.||++||++|+.+.+.+.+....... ..|+.+|++.......+.|++.+ +||++++ ++|+.
T Consensus 10 ~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~Gk~ 89 (117)
T cd02959 10 DGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPSGDV 89 (117)
T ss_pred HHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCCCccceEEEECCCCCC
Confidence 44555557899999999999999999999999987665433 56777787766124567899986 9999999 59998
Q ss_pred eee---eeCCCCHHHHHHHHHHH
Q psy5679 127 VDT---VVGNADQDVIQTLVSKL 146 (149)
Q Consensus 127 ~~~---~~g~~~~~~l~~~i~~~ 146 (149)
+.+ ..|..+.+.+.+.+..+
T Consensus 90 ~~~~~~~~~~~~~~~f~~~~~~~ 112 (117)
T cd02959 90 HPEIINKKGNPNYKYFYSSAAQV 112 (117)
T ss_pred chhhccCCCCccccccCCCHHHH
Confidence 764 44444555554444443
No 65
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.69 E-value=3.8e-16 Score=122.09 Aligned_cols=105 Identities=18% Similarity=0.401 Sum_probs=89.3
Q ss_pred eEEEecchhhHHHHH----cCCCCEEEEEeCCCChhHHhhhHHH---HHHHhhcCCceEEEEEecCC---chhhhHhcCC
Q psy5679 43 AYLIIEKIDDFKQTI----RGRNPVLAYFFKPSCGFCKQLEPKI---STVSETTSGVEFVKINVENG---GGEIAREFEV 112 (149)
Q Consensus 43 ~v~~i~~~~~~~~~~----~~~~~~vv~f~~~~C~~C~~~~~~l---~~~~~~~~~v~~~~vd~~~~---~~~~~~~~~i 112 (149)
..+.+++.+++++.+ .++++++|+||++||++|+.+++.+ +++.+.++++.++++|++++ ..++.++|++
T Consensus 453 ~~~~i~s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~~~~v~vDvt~~~~~~~~l~~~~~v 532 (571)
T PRK00293 453 NFQRIKTVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALADTVLLQADVTANNAEDVALLKHYNV 532 (571)
T ss_pred CceecCCHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhcCCEEEEEECCCCChhhHHHHHHcCC
Confidence 477788888998887 3578999999999999999998875 67888887788999999854 1578899999
Q ss_pred CcccEEEEEe-CCeee--eeeeCCCCHHHHHHHHHHHh
Q psy5679 113 QAVPTVIGFR-NGDPV--DTVVGNADQDVIQTLVSKLS 147 (149)
Q Consensus 113 ~~~Pt~~~~~-~g~~~--~~~~g~~~~~~l~~~i~~~~ 147 (149)
.++|++++|+ +|+.+ .++.|..+.+++.++++++.
T Consensus 533 ~g~Pt~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~~~ 570 (571)
T PRK00293 533 LGLPTILFFDAQGQEIPDARVTGFMDAAAFAAHLRQLQ 570 (571)
T ss_pred CCCCEEEEECCCCCCcccccccCCCCHHHHHHHHHHhc
Confidence 9999999994 89884 57889899999999998764
No 66
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.69 E-value=4.7e-16 Score=118.87 Aligned_cols=102 Identities=22% Similarity=0.436 Sum_probs=88.8
Q ss_pred eEEEecchhhHHHHH-cCCCCEEEEEeCCCChhHHhhhHHHHHHHhhcCC----ceEEEEEecCCchhhhHhcCCCcccE
Q psy5679 43 AYLIIEKIDDFKQTI-RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG----VEFVKINVENGGGEIAREFEVQAVPT 117 (149)
Q Consensus 43 ~v~~i~~~~~~~~~~-~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~----v~~~~vd~~~~~~~~~~~~~i~~~Pt 117 (149)
.+..+.. ++|++.+ ..+++++|+||++||++|+.+.|.++++++.+.+ +.|+.+|++.+ ++.. +++.++|+
T Consensus 347 ~v~~l~~-~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n--~~~~-~~i~~~Pt 422 (462)
T TIGR01130 347 PVKVLVG-KNFDEIVLDETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAN--DVPP-FEVEGFPT 422 (462)
T ss_pred ccEEeeC-cCHHHHhccCCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCC--ccCC-CCccccCE
Confidence 4677775 8999988 7899999999999999999999999999999875 88999999988 4555 99999999
Q ss_pred EEEEeCCeee--eeeeCCCCHHHHHHHHHHHhc
Q psy5679 118 VIGFRNGDPV--DTVVGNADQDVIQTLVSKLSQ 148 (149)
Q Consensus 118 ~~~~~~g~~~--~~~~g~~~~~~l~~~i~~~~~ 148 (149)
+++|++|+.. ..+.|..+.+.+.+||++...
T Consensus 423 ~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~ 455 (462)
T TIGR01130 423 IKFVPAGKKSEPVPYDGDRTLEDFSKFIAKHAT 455 (462)
T ss_pred EEEEeCCCCcCceEecCcCCHHHHHHHHHhcCC
Confidence 9999888653 467888999999999998754
No 67
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=99.67 E-value=2.8e-15 Score=95.63 Aligned_cols=98 Identities=11% Similarity=0.085 Sum_probs=87.4
Q ss_pred hhHHHHHcCCCCEEEEEeCC--CChhHHhhhHHHHHHHhhcC-C-ceEEEEEecCCchhhhHhcCCCcccEEEEEeCCee
Q psy5679 51 DDFKQTIRGRNPVLAYFFKP--SCGFCKQLEPKISTVSETTS-G-VEFVKINVENGGGEIAREFEVQAVPTVIGFRNGDP 126 (149)
Q Consensus 51 ~~~~~~~~~~~~~vv~f~~~--~C~~C~~~~~~l~~~~~~~~-~-v~~~~vd~~~~~~~~~~~~~i~~~Pt~~~~~~g~~ 126 (149)
.+++..+...+..+++|-++ -++.+.++.-+|++++++|+ + +.+++||+|++ ++++.+|||.++||+++|+||+.
T Consensus 25 ~~~~~~~~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~-~~LA~~fgV~siPTLl~FkdGk~ 103 (132)
T PRK11509 25 SRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQS-EAIGDRFGVFRFPATLVFTGGNY 103 (132)
T ss_pred ccHHHHHhCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCC-HHHHHHcCCccCCEEEEEECCEE
Confidence 66677776677777777664 47999999999999999998 3 99999999999 99999999999999999999999
Q ss_pred eeeeeCCCCHHHHHHHHHHHhcC
Q psy5679 127 VDTVVGNADQDVIQTLVSKLSQK 149 (149)
Q Consensus 127 ~~~~~g~~~~~~l~~~i~~~~~k 149 (149)
+....|..+.+++.++|++++.+
T Consensus 104 v~~i~G~~~k~~l~~~I~~~L~~ 126 (132)
T PRK11509 104 RGVLNGIHPWAELINLMRGLVEP 126 (132)
T ss_pred EEEEeCcCCHHHHHHHHHHHhcC
Confidence 99999999999999999998753
No 68
>KOG0912|consensus
Probab=99.66 E-value=2.2e-16 Score=111.64 Aligned_cols=97 Identities=19% Similarity=0.418 Sum_probs=88.1
Q ss_pred hhHHHHHcCCCCEEEEEeCCCChhHHhhhHHHHHHHhh----cCC--ceEEEEEecCCchhhhHhcCCCcccEEEEEeCC
Q psy5679 51 DDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSET----TSG--VEFVKINVENGGGEIAREFEVQAVPTVIGFRNG 124 (149)
Q Consensus 51 ~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~----~~~--v~~~~vd~~~~~~~~~~~~~i~~~Pt~~~~~~g 124 (149)
++.+.++..+..++|.||++||+.++.+.|.+++.+.. +|+ +..+.|||+.+ .+++.+|.|..+||+-+|.+|
T Consensus 4 ~N~~~il~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e-~~ia~ky~I~KyPTlKvfrnG 82 (375)
T KOG0912|consen 4 ENIDSILDSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKE-DDIADKYHINKYPTLKVFRNG 82 (375)
T ss_pred ccHHHhhccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchh-hHHhhhhccccCceeeeeecc
Confidence 67788888899999999999999999999999988765 453 99999999999 999999999999999999999
Q ss_pred eeee-eeeCCCCHHHHHHHHHHHhc
Q psy5679 125 DPVD-TVVGNADQDVIQTLVSKLSQ 148 (149)
Q Consensus 125 ~~~~-~~~g~~~~~~l~~~i~~~~~ 148 (149)
.... .|.|..+.+.|.++|++.+.
T Consensus 83 ~~~~rEYRg~RsVeaL~efi~kq~s 107 (375)
T KOG0912|consen 83 EMMKREYRGQRSVEALIEFIEKQLS 107 (375)
T ss_pred chhhhhhccchhHHHHHHHHHHHhc
Confidence 9887 88998999999999988653
No 69
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.66 E-value=7e-16 Score=118.33 Aligned_cols=87 Identities=17% Similarity=0.400 Sum_probs=75.4
Q ss_pred cCCCCEEEEEeCCCChhHHhhhHHHHHHHhhcC--CceEEEEE----------------------------ecCCchhhh
Q psy5679 58 RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTS--GVEFVKIN----------------------------VENGGGEIA 107 (149)
Q Consensus 58 ~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd----------------------------~~~~~~~~~ 107 (149)
+++++++|.||++||++|+...|.|+++.++++ ++.|+.|. +|.+ ..+.
T Consensus 54 skGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~-~~la 132 (521)
T PRK14018 54 KKDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNG-GTLA 132 (521)
T ss_pred cCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceecccc-HHHH
Confidence 578999999999999999999999999999887 36666553 2344 6788
Q ss_pred HhcCCCcccEEEEE-eCCeeeeeeeCCCCHHHHHHHHHH
Q psy5679 108 REFEVQAVPTVIGF-RNGDPVDTVVGNADQDVIQTLVSK 145 (149)
Q Consensus 108 ~~~~i~~~Pt~~~~-~~g~~~~~~~g~~~~~~l~~~i~~ 145 (149)
+.|+|.++|+++++ ++|+++..+.|..+.++|..+|+.
T Consensus 133 k~fgV~giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie~ 171 (521)
T PRK14018 133 QSLNISVYPSWAIIGKDGDVQRIVKGSISEAQALALIRN 171 (521)
T ss_pred HHcCCCCcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHHH
Confidence 89999999999766 899999999999999999999984
No 70
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.66 E-value=1.7e-15 Score=105.49 Aligned_cols=84 Identities=15% Similarity=0.284 Sum_probs=73.3
Q ss_pred cCCCCEEE-EEeCCCChhHHhhhHHHHHHHhhcCCceEEEEEecCCchhhhHhcCCCcccEEEEEeCCeeeeeeeCCCCH
Q psy5679 58 RGRNPVLA-YFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTVIGFRNGDPVDTVVGNADQ 136 (149)
Q Consensus 58 ~~~~~~vv-~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~ 136 (149)
..++++.| .||++||++|..+.+.+++++..++++.+..+|.+.+ ++++++|+|.++||++++++|+. +.|..+.
T Consensus 130 ~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~-~~~~~~~~V~~vPtl~i~~~~~~---~~G~~~~ 205 (215)
T TIGR02187 130 SLDEPVRIEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEANEN-PDLAEKYGVMSVPKIVINKGVEE---FVGAYPE 205 (215)
T ss_pred hcCCCcEEEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCCC-HHHHHHhCCccCCEEEEecCCEE---EECCCCH
Confidence 34555444 4999999999999999999999987799999999999 99999999999999999988764 7888889
Q ss_pred HHHHHHHHH
Q psy5679 137 DVIQTLVSK 145 (149)
Q Consensus 137 ~~l~~~i~~ 145 (149)
+++.++|..
T Consensus 206 ~~l~~~l~~ 214 (215)
T TIGR02187 206 EQFLEYILS 214 (215)
T ss_pred HHHHHHHHh
Confidence 999999875
No 71
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.66 E-value=4e-15 Score=100.33 Aligned_cols=89 Identities=18% Similarity=0.313 Sum_probs=74.3
Q ss_pred cCCCCEEEEEeCCCChhHHhhhHHHHHHHhhcCCceEEEEEec-----------------------CCchhhhHhcCCCc
Q psy5679 58 RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVE-----------------------NGGGEIAREFEVQA 114 (149)
Q Consensus 58 ~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~-----------------------~~~~~~~~~~~i~~ 114 (149)
.++++++|+||++||++|+...|.++++.+. ++.++.|+.+ .. ..+.+.|++.+
T Consensus 61 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~--~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~-~~~~~~~~v~~ 137 (173)
T TIGR00385 61 IQGKPVLLNVWASWCPPCRAEHPYLNELAKD--GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPN-GKLGLDLGVYG 137 (173)
T ss_pred cCCCEEEEEEECCcCHHHHHHHHHHHHHHHc--CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCC-CchHHhcCCee
Confidence 4689999999999999999999999999764 3666666642 22 45667899999
Q ss_pred ccEEEEE-eCCeeeeeeeCCCCHHHHHHHHHHHhcC
Q psy5679 115 VPTVIGF-RNGDPVDTVVGNADQDVIQTLVSKLSQK 149 (149)
Q Consensus 115 ~Pt~~~~-~~g~~~~~~~g~~~~~~l~~~i~~~~~k 149 (149)
+|+.+++ ++|+.+..+.|..+.+++.++|+++++|
T Consensus 138 ~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~~~~ 173 (173)
T TIGR00385 138 APETFLVDGNGVILYRHAGPLNNEVWTEGFLPAMEK 173 (173)
T ss_pred CCeEEEEcCCceEEEEEeccCCHHHHHHHHHHHhhC
Confidence 9976666 7999999999999999999999999876
No 72
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.65 E-value=8.9e-16 Score=96.28 Aligned_cols=86 Identities=21% Similarity=0.515 Sum_probs=66.3
Q ss_pred cCCCCEEEEEeCCCChhHHhhhHHHHH---HHhhcCC-ceEEEEEecCC-------------------chhhhHhcCCCc
Q psy5679 58 RGRNPVLAYFFKPSCGFCKQLEPKIST---VSETTSG-VEFVKINVENG-------------------GGEIAREFEVQA 114 (149)
Q Consensus 58 ~~~~~~vv~f~~~~C~~C~~~~~~l~~---~~~~~~~-v~~~~vd~~~~-------------------~~~~~~~~~i~~ 114 (149)
.++++++++|+++||++|+.+.+.+.+ +...+.+ +.++.++++.. ..++.++|+|.+
T Consensus 3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~g 82 (112)
T PF13098_consen 3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNG 82 (112)
T ss_dssp TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--S
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCc
Confidence 368999999999999999999999885 5555544 78888888753 135889999999
Q ss_pred ccEEEEE-eCCeeeeeeeCCCCHHHHHHHH
Q psy5679 115 VPTVIGF-RNGDPVDTVVGNADQDVIQTLV 143 (149)
Q Consensus 115 ~Pt~~~~-~~g~~~~~~~g~~~~~~l~~~i 143 (149)
+||++++ .+|+.+..+.|..+.++|.++|
T Consensus 83 tPt~~~~d~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 83 TPTIVFLDKDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp SSEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred cCEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence 9999999 5899999999999999998875
No 73
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.64 E-value=3.8e-15 Score=101.47 Aligned_cols=89 Identities=19% Similarity=0.325 Sum_probs=73.6
Q ss_pred cCCCCEEEEEeCCCChhHHhhhHHHHHHHhhcCCceEEEEEecCC----------------------chhhhHhcCCCcc
Q psy5679 58 RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENG----------------------GGEIAREFEVQAV 115 (149)
Q Consensus 58 ~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~----------------------~~~~~~~~~i~~~ 115 (149)
.++++++|+||++||++|+...|.+.++.++ ++.++.|+.++. +..+...|++.++
T Consensus 66 ~~gk~vvv~FwatwC~~C~~e~p~l~~l~~~--~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~ 143 (185)
T PRK15412 66 TQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ--GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGA 143 (185)
T ss_pred cCCCEEEEEEECCCCHHHHHHHHHHHHHHHc--CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCcC
Confidence 4689999999999999999999999999753 577888876443 0124457899999
Q ss_pred cEEEEE-eCCeeeeeeeCCCCHHHHHHHHHHHhc
Q psy5679 116 PTVIGF-RNGDPVDTVVGNADQDVIQTLVSKLSQ 148 (149)
Q Consensus 116 Pt~~~~-~~g~~~~~~~g~~~~~~l~~~i~~~~~ 148 (149)
|+.+++ ++|+....+.|..+.++++++|+.+++
T Consensus 144 P~t~vid~~G~i~~~~~G~~~~~~l~~~i~~~~~ 177 (185)
T PRK15412 144 PETFLIDGNGIIRYRHAGDLNPRVWESEIKPLWE 177 (185)
T ss_pred CeEEEECCCceEEEEEecCCCHHHHHHHHHHHHH
Confidence 976666 799999999999999999999988765
No 74
>PHA02125 thioredoxin-like protein
Probab=99.64 E-value=4.2e-15 Score=86.86 Aligned_cols=71 Identities=20% Similarity=0.490 Sum_probs=59.5
Q ss_pred EEEEeCCCChhHHhhhHHHHHHHhhcCCceEEEEEecCCchhhhHhcCCCcccEEEEEeCCeeeeeeeCC-CCHHHHHHH
Q psy5679 64 LAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTVIGFRNGDPVDTVVGN-ADQDVIQTL 142 (149)
Q Consensus 64 vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~-~~~~~l~~~ 142 (149)
+++||++||++|+.+.|.|+++. +.++.+|.+++ ++++++|+|.++||++ +|+.+.++.|. .+..+|++.
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~-----~~~~~vd~~~~-~~l~~~~~v~~~PT~~---~g~~~~~~~G~~~~~~~l~~~ 72 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE-----YTYVDVDTDEG-VELTAKHHIRSLPTLV---NTSTLDRFTGVPRNVAELKEK 72 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh-----heEEeeeCCCC-HHHHHHcCCceeCeEE---CCEEEEEEeCCCCcHHHHHHH
Confidence 78999999999999999998763 46889999999 9999999999999997 68888888884 344666654
Q ss_pred H
Q psy5679 143 V 143 (149)
Q Consensus 143 i 143 (149)
+
T Consensus 73 ~ 73 (75)
T PHA02125 73 L 73 (75)
T ss_pred h
Confidence 4
No 75
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.63 E-value=4.8e-15 Score=94.36 Aligned_cols=82 Identities=13% Similarity=0.203 Sum_probs=66.5
Q ss_pred hhhHHHHHcCCCCEEEEEeCCCChhHHhhhHHH---HHHHhhc-CCceEEEEEecCCchhhhHh--------cCCCcccE
Q psy5679 50 IDDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKI---STVSETT-SGVEFVKINVENGGGEIARE--------FEVQAVPT 117 (149)
Q Consensus 50 ~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l---~~~~~~~-~~v~~~~vd~~~~~~~~~~~--------~~i~~~Pt 117 (149)
.+.++.+..++++++|+|+++||++|+.+.+.. .++++.. +++.++.+|.++. +++.+. |++.++|+
T Consensus 5 ~eal~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~-~~~~~~~~~~~~~~~~~~G~Pt 83 (124)
T cd02955 5 EEAFEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREER-PDVDKIYMNAAQAMTGQGGWPL 83 (124)
T ss_pred HHHHHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcC-cHHHHHHHHHHHHhcCCCCCCE
Confidence 466777778999999999999999999998733 4666654 3488999999988 777653 58999999
Q ss_pred EEEE-eCCeeeeeeeC
Q psy5679 118 VIGF-RNGDPVDTVVG 132 (149)
Q Consensus 118 ~~~~-~~g~~~~~~~g 132 (149)
++++ .+|+++....+
T Consensus 84 ~vfl~~~G~~~~~~~~ 99 (124)
T cd02955 84 NVFLTPDLKPFFGGTY 99 (124)
T ss_pred EEEECCCCCEEeeeee
Confidence 9999 78998865554
No 76
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.62 E-value=5.6e-15 Score=86.53 Aligned_cols=71 Identities=23% Similarity=0.397 Sum_probs=59.5
Q ss_pred EEEeCCCChhHHhhhHHHHHHHhhcCC-ceEEEEEecCCchhhhHhcCCCcccEEEEEeCCeeeeeeeCC-CCHHHHHHH
Q psy5679 65 AYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENGGGEIAREFEVQAVPTVIGFRNGDPVDTVVGN-ADQDVIQTL 142 (149)
Q Consensus 65 v~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~-~~~~~l~~~ 142 (149)
|.||++||++|..+.|.+++++++++. +.++.+| . .+.+.+|++.++|++++ ||+.+ +.|. .+.+++.++
T Consensus 3 i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~---~-~~~a~~~~v~~vPti~i--~G~~~--~~G~~~~~~~l~~~ 74 (76)
T TIGR00412 3 IQIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVT---D-MNEILEAGVTATPGVAV--DGELV--IMGKIPSKEEIKEI 74 (76)
T ss_pred EEEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeC---C-HHHHHHcCCCcCCEEEE--CCEEE--EEeccCCHHHHHHH
Confidence 789999999999999999999999976 7777776 2 34577899999999999 99886 7774 566788776
Q ss_pred H
Q psy5679 143 V 143 (149)
Q Consensus 143 i 143 (149)
+
T Consensus 75 l 75 (76)
T TIGR00412 75 L 75 (76)
T ss_pred h
Confidence 5
No 77
>KOG4277|consensus
Probab=99.61 E-value=1.3e-15 Score=107.94 Aligned_cols=86 Identities=24% Similarity=0.470 Sum_probs=77.0
Q ss_pred cCCCCEEEEEeCCCChhHHhhhHHHHHHHhhcCC----ceEEEEEecCCchhhhHhcCCCcccEEEEEeCCeeeeeeeCC
Q psy5679 58 RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG----VEFVKINVENGGGEIAREFEVQAVPTVIGFRNGDPVDTVVGN 133 (149)
Q Consensus 58 ~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~----v~~~~vd~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~ 133 (149)
..+..|+|.||+|||++|+++.|+|.++....++ +++.++|++.. +.++.+++|+++||+.++++|-.+ .|.|.
T Consensus 41 kdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f-~aiAnefgiqGYPTIk~~kgd~a~-dYRG~ 118 (468)
T KOG4277|consen 41 KDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRF-PAIANEFGIQGYPTIKFFKGDHAI-DYRGG 118 (468)
T ss_pred ccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccc-hhhHhhhccCCCceEEEecCCeee-ecCCC
Confidence 5788999999999999999999999999888876 99999999999 999999999999999999888664 56676
Q ss_pred CCHHHHHHHHHH
Q psy5679 134 ADQDVIQTLVSK 145 (149)
Q Consensus 134 ~~~~~l~~~i~~ 145 (149)
...+.+.++-..
T Consensus 119 R~Kd~iieFAhR 130 (468)
T KOG4277|consen 119 REKDAIIEFAHR 130 (468)
T ss_pred ccHHHHHHHHHh
Confidence 888888887654
No 78
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.61 E-value=1.5e-14 Score=95.32 Aligned_cols=89 Identities=15% Similarity=0.353 Sum_probs=69.5
Q ss_pred cCCCCEEEEEeCCCChhHHhhhHHHHHHHhhcCCceEEEEEecCC-----------chhh-hHhc---CCCcccEEEEE-
Q psy5679 58 RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENG-----------GGEI-AREF---EVQAVPTVIGF- 121 (149)
Q Consensus 58 ~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~-----------~~~~-~~~~---~i~~~Pt~~~~- 121 (149)
...+..+|+||++||++|++..|.+++++++++ +.++.|+.|.. .... ...| ++.++|+.+++
T Consensus 48 ~l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~-~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LID 126 (153)
T TIGR02738 48 NQDDYALVFFYQSTCPYCHQFAPVLKRFSQQFG-LPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLVN 126 (153)
T ss_pred hcCCCEEEEEECCCChhHHHHHHHHHHHHHHcC-CcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEEe
Confidence 446677999999999999999999999999984 66666676643 0122 2345 78999999999
Q ss_pred eCCee-eeeeeCCCCHHHHHHHHHHHh
Q psy5679 122 RNGDP-VDTVVGNADQDVIQTLVSKLS 147 (149)
Q Consensus 122 ~~g~~-~~~~~g~~~~~~l~~~i~~~~ 147 (149)
++|+. .....|..+.+++.+.|++++
T Consensus 127 ~~G~~i~~~~~G~~s~~~l~~~I~~ll 153 (153)
T TIGR02738 127 VNTRKAYPVLQGAVDEAELANRMDEIL 153 (153)
T ss_pred CCCCEEEEEeecccCHHHHHHHHHHhC
Confidence 56664 557889999999999988764
No 79
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.60 E-value=6.4e-15 Score=84.20 Aligned_cols=62 Identities=19% Similarity=0.434 Sum_probs=56.3
Q ss_pred EEEEEeCCCChhHHhhhHHHHHHHhhcCCceEEEEEecCCchhhhHhcCCCcccEEEEEeCCeee
Q psy5679 63 VLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTVIGFRNGDPV 127 (149)
Q Consensus 63 ~vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~ 127 (149)
-+++|+++||++|+.+.+.+++++..++++.+..+|++++ +++.++|++.++|++++ +|+.+
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~~-~~l~~~~~i~~vPti~i--~~~~~ 63 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAAEF-PDLADEYGVMSVPAIVI--NGKVE 63 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEcccC-HhHHHHcCCcccCEEEE--CCEEE
Confidence 3688999999999999999999998887799999999999 99999999999999987 77653
No 80
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.60 E-value=3.2e-14 Score=95.65 Aligned_cols=88 Identities=19% Similarity=0.442 Sum_probs=76.8
Q ss_pred CCCCEEEEEeCCCChhHHhhhHHHHHHHhhcCC--ceEEEEEecCC---------------------chhhhHhcCCCcc
Q psy5679 59 GRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG--VEFVKINVENG---------------------GGEIAREFEVQAV 115 (149)
Q Consensus 59 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~--v~~~~vd~~~~---------------------~~~~~~~~~i~~~ 115 (149)
.+++++|+||++||+.|+...+.+.++.+++++ +.++.++++.. ...+.+.|++..+
T Consensus 60 ~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~ 139 (173)
T PRK03147 60 KGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGVGPL 139 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCCCCc
Confidence 678999999999999999999999999999875 88888887532 1577899999999
Q ss_pred cEEEEE-eCCeeeeeeeCCCCHHHHHHHHHHH
Q psy5679 116 PTVIGF-RNGDPVDTVVGNADQDVIQTLVSKL 146 (149)
Q Consensus 116 Pt~~~~-~~g~~~~~~~g~~~~~~l~~~i~~~ 146 (149)
|+++++ ++|+.+..+.|..+.+++.++++++
T Consensus 140 P~~~lid~~g~i~~~~~g~~~~~~l~~~l~~~ 171 (173)
T PRK03147 140 PTTFLIDKDGKVVKVITGEMTEEQLEEYLEKI 171 (173)
T ss_pred CeEEEECCCCcEEEEEeCCCCHHHHHHHHHHh
Confidence 998888 6899988899999999999998865
No 81
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.59 E-value=2.9e-14 Score=102.24 Aligned_cols=88 Identities=19% Similarity=0.419 Sum_probs=73.2
Q ss_pred CCCCEEEEEeCCCChhHHhhhHHHHHHHhhcCCceEEEEEecCC----------chhhhHhcCCCcccEEEEEeC-Ceee
Q psy5679 59 GRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENG----------GGEIAREFEVQAVPTVIGFRN-GDPV 127 (149)
Q Consensus 59 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~----------~~~~~~~~~i~~~Pt~~~~~~-g~~~ 127 (149)
.+++++|+||++||++|+.+.|.|+++++++. +.++.|++|.. +..++++|||.++|+++++.. |+.+
T Consensus 165 ~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg-~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~~~~v 243 (271)
T TIGR02740 165 AKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG-IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPDPNQF 243 (271)
T ss_pred cCCeEEEEEECCCCccHHHHhHHHHHHHHHcC-cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECCCCEE
Confidence 58899999999999999999999999999995 67777777652 146889999999999999964 5444
Q ss_pred -eeeeCCCCHHHHHHHHHHHh
Q psy5679 128 -DTVVGNADQDVIQTLVSKLS 147 (149)
Q Consensus 128 -~~~~g~~~~~~l~~~i~~~~ 147 (149)
....|..+.++|.+.|..+.
T Consensus 244 ~~v~~G~~s~~eL~~~i~~~a 264 (271)
T TIGR02740 244 TPIGFGVMSADELVDRILLAA 264 (271)
T ss_pred EEEEeCCCCHHHHHHHHHHHh
Confidence 45668899999999988764
No 82
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.57 E-value=3.5e-14 Score=91.01 Aligned_cols=79 Identities=20% Similarity=0.332 Sum_probs=65.3
Q ss_pred CCCCEEEEEeCCCChhHHhhhHHHHHHHhhcCCceEEEEEe-----------------------cCCchhhhHhcCCCcc
Q psy5679 59 GRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINV-----------------------ENGGGEIAREFEVQAV 115 (149)
Q Consensus 59 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~-----------------------~~~~~~~~~~~~i~~~ 115 (149)
++++++|+||++||+.|+...|.++++.+.+. +.++.|+. |.. ..+++.|++.++
T Consensus 24 ~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~~-~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~-~~~~~~~~v~~~ 101 (127)
T cd03010 24 KGKPYLLNVWASWCAPCREEHPVLMALARQGR-VPIYGINYKDNPENALAWLARHGNPYAAVGFDPD-GRVGIDLGVYGV 101 (127)
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHhcC-cEEEEEECCCCHHHHHHHHHhcCCCCceEEECCc-chHHHhcCCCCC
Confidence 57899999999999999999999999988873 66666653 344 567888999999
Q ss_pred cEEEEE-eCCeeeeeeeCCCCHHHH
Q psy5679 116 PTVIGF-RNGDPVDTVVGNADQDVI 139 (149)
Q Consensus 116 Pt~~~~-~~g~~~~~~~g~~~~~~l 139 (149)
|+.+++ ++|+.+..+.|..+.+.+
T Consensus 102 P~~~~ld~~G~v~~~~~G~~~~~~~ 126 (127)
T cd03010 102 PETFLIDGDGIIRYKHVGPLTPEVW 126 (127)
T ss_pred CeEEEECCCceEEEEEeccCChHhc
Confidence 966666 799999999998877654
No 83
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=99.56 E-value=4.5e-14 Score=85.01 Aligned_cols=76 Identities=16% Similarity=0.232 Sum_probs=65.7
Q ss_pred CCCCEEEEEeCCCChhHHhhhHHHHHHHhhcCCceEEEEEecCCchhhhHhcCCCcccEEEEEeCCeeeeeeeCCCCHHH
Q psy5679 59 GRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTVIGFRNGDPVDTVVGNADQDV 138 (149)
Q Consensus 59 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~ 138 (149)
.+...+..|+++||++|....+.++++++.++++.+..+|.++. ++++++|+|.++|++++ ||+.+. .|..+.++
T Consensus 11 ~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~-~e~a~~~~V~~vPt~vi--dG~~~~--~G~~~~~e 85 (89)
T cd03026 11 NGPINFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGALF-QDEVEERGIMSVPAIFL--NGELFG--FGRMTLEE 85 (89)
T ss_pred CCCEEEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhHhC-HHHHHHcCCccCCEEEE--CCEEEE--eCCCCHHH
Confidence 34446788899999999999999999999998899999999999 99999999999999976 898754 47556555
Q ss_pred H
Q psy5679 139 I 139 (149)
Q Consensus 139 l 139 (149)
+
T Consensus 86 ~ 86 (89)
T cd03026 86 I 86 (89)
T ss_pred H
Confidence 4
No 84
>KOG0191|consensus
Probab=99.56 E-value=2.1e-14 Score=107.88 Aligned_cols=97 Identities=23% Similarity=0.508 Sum_probs=85.4
Q ss_pred hhHHHHH-cCCCCEEEEEeCCCChhHHhhhHHHHHHHhhcCC-ceEEEEEecCCchhhhHhcCCCcccEEEEEeCCeeee
Q psy5679 51 DDFKQTI-RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENGGGEIAREFEVQAVPTVIGFRNGDPVD 128 (149)
Q Consensus 51 ~~~~~~~-~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~ 128 (149)
..+.... ..+++++|+||++||++|.++.|.+++++..+.+ +.++.||++.+ .++|++|+|+++||+.+|..|....
T Consensus 37 ~~~~~~~~~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~-~~~~~~y~i~gfPtl~~f~~~~~~~ 115 (383)
T KOG0191|consen 37 DSFFDFLLKDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEH-KDLCEKYGIQGFPTLKVFRPGKKPI 115 (383)
T ss_pred cccHHHhhccCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhh-HHHHHhcCCccCcEEEEEcCCCcee
Confidence 3444444 8899999999999999999999999999999998 99999999999 9999999999999999998885555
Q ss_pred eeeCCCCHHHHHHHHHHHhc
Q psy5679 129 TVVGNADQDVIQTLVSKLSQ 148 (149)
Q Consensus 129 ~~~g~~~~~~l~~~i~~~~~ 148 (149)
.+.|..+.+.+.+++...+.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~ 135 (383)
T KOG0191|consen 116 DYSGPRNAESLAEFLIKELE 135 (383)
T ss_pred eccCcccHHHHHHHHHHhhc
Confidence 77777888999988877654
No 85
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.51 E-value=3.6e-13 Score=90.54 Aligned_cols=84 Identities=15% Similarity=0.289 Sum_probs=69.7
Q ss_pred EEEEeCCCChhHHhhhHHHHHHHhhcCCceEEEEEecCC------------chhhhHhcCC--CcccEEEEE-eCCeee-
Q psy5679 64 LAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENG------------GGEIAREFEV--QAVPTVIGF-RNGDPV- 127 (149)
Q Consensus 64 vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~------------~~~~~~~~~i--~~~Pt~~~~-~~g~~~- 127 (149)
+|+||++||++|+++.|.+++++++++ +.++.|+.|.. +..+.+.|++ .++|+.+++ ++|+.+
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g-~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~~ 151 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYG-FSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEAL 151 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcC-CEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEEE
Confidence 788999999999999999999999985 77777776633 0235668885 699999999 789885
Q ss_pred eeeeCCCCHHHHHHHHHHHhc
Q psy5679 128 DTVVGNADQDVIQTLVSKLSQ 148 (149)
Q Consensus 128 ~~~~g~~~~~~l~~~i~~~~~ 148 (149)
..+.|..+.+++.+.|.++++
T Consensus 152 ~~~~G~~~~~~L~~~I~~ll~ 172 (181)
T PRK13728 152 PLLQGATDAAGFMARMDTVLQ 172 (181)
T ss_pred EEEECCCCHHHHHHHHHHHHh
Confidence 579999999999999988764
No 86
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.51 E-value=1.3e-13 Score=83.97 Aligned_cols=66 Identities=27% Similarity=0.630 Sum_probs=54.8
Q ss_pred CCCEEEEEeCCCChhHHhhhHHHHHHHhhcC---CceEEEEEecCC------------------------chhhhHhcCC
Q psy5679 60 RNPVLAYFFKPSCGFCKQLEPKISTVSETTS---GVEFVKINVENG------------------------GGEIAREFEV 112 (149)
Q Consensus 60 ~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~---~v~~~~vd~~~~------------------------~~~~~~~~~i 112 (149)
+++++|+||++||++|....|.+.++.+.++ ++.++.|+.|+. ...+.+.|++
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i 80 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGI 80 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCC
Confidence 5789999999999999999999999999999 399999998755 1357788999
Q ss_pred CcccEEEEE-eCCe
Q psy5679 113 QAVPTVIGF-RNGD 125 (149)
Q Consensus 113 ~~~Pt~~~~-~~g~ 125 (149)
.++|+++++ ++|+
T Consensus 81 ~~iP~~~lld~~G~ 94 (95)
T PF13905_consen 81 NGIPTLVLLDPDGK 94 (95)
T ss_dssp TSSSEEEEEETTSB
T ss_pred CcCCEEEEECCCCC
Confidence 999999999 5675
No 87
>KOG1731|consensus
Probab=99.51 E-value=1.4e-14 Score=109.98 Aligned_cols=102 Identities=20% Similarity=0.416 Sum_probs=80.5
Q ss_pred eeEEEecchhhHHHHH-cCCCCEEEEEeCCCChhHHhhhHHHHHHHhhcCC----ceEEEEEec--CCchhhhHhcCCCc
Q psy5679 42 MAYLIIEKIDDFKQTI-RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG----VEFVKINVE--NGGGEIAREFEVQA 114 (149)
Q Consensus 42 ~~v~~i~~~~~~~~~~-~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~----v~~~~vd~~--~~~~~~~~~~~i~~ 114 (149)
.+++.++ .++|...+ .+++..+|.||++||++|+.++|.++++++...+ +.++.|||- +| ..+|+.|+|++
T Consensus 39 D~ii~Ld-~~tf~~~v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N-~~lCRef~V~~ 116 (606)
T KOG1731|consen 39 DPIIELD-VDTFNAAVFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEEN-VKLCREFSVSG 116 (606)
T ss_pred CCeEEee-hhhhHHHhcccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhh-hhhHhhcCCCC
Confidence 5588887 59999999 6668999999999999999999999999998765 899999994 55 89999999999
Q ss_pred ccEEEEEeCCee----eeeeeCCCCHHHHHHHHHH
Q psy5679 115 VPTVIGFRNGDP----VDTVVGNADQDVIQTLVSK 145 (149)
Q Consensus 115 ~Pt~~~~~~g~~----~~~~~g~~~~~~l~~~i~~ 145 (149)
+|++.+|+-+-. -..+.|.....++.+.+.+
T Consensus 117 ~Ptlryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~ 151 (606)
T KOG1731|consen 117 YPTLRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIR 151 (606)
T ss_pred CceeeecCCccccCcCCCcccCCcchhhHHHHHHH
Confidence 999999943211 1234444445555555544
No 88
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.51 E-value=1.9e-13 Score=113.32 Aligned_cols=89 Identities=19% Similarity=0.302 Sum_probs=77.4
Q ss_pred CCCCEEEEEeCCCChhHHhhhHHHHHHHhhcCC--ceEEEEEe---c------------------------CCchhhhHh
Q psy5679 59 GRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG--VEFVKINV---E------------------------NGGGEIARE 109 (149)
Q Consensus 59 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~--v~~~~vd~---~------------------------~~~~~~~~~ 109 (149)
++++++|+||++||++|+...|.|+++.++|++ +.++.|.. | .. ..+.++
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~-~~~~~~ 497 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGD-MYLWRE 497 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCc-hHHHHh
Confidence 689999999999999999999999999999976 77777742 1 12 456789
Q ss_pred cCCCcccEEEEE-eCCeeeeeeeCCCCHHHHHHHHHHHhc
Q psy5679 110 FEVQAVPTVIGF-RNGDPVDTVVGNADQDVIQTLVSKLSQ 148 (149)
Q Consensus 110 ~~i~~~Pt~~~~-~~g~~~~~~~g~~~~~~l~~~i~~~~~ 148 (149)
|++.++|+++++ ++|+.+.++.|....+++.++|+..+.
T Consensus 498 ~~V~~iPt~ilid~~G~iv~~~~G~~~~~~l~~~l~~~l~ 537 (1057)
T PLN02919 498 LGVSSWPTFAVVSPNGKLIAQLSGEGHRKDLDDLVEAALQ 537 (1057)
T ss_pred cCCCccceEEEECCCCeEEEEEecccCHHHHHHHHHHHHH
Confidence 999999999999 799999999999999999999998753
No 89
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=99.50 E-value=4e-13 Score=84.65 Aligned_cols=91 Identities=13% Similarity=0.234 Sum_probs=76.0
Q ss_pred cCCCCEEEEEeCCCChhHHhhhHHH---HHHHhhcCC-ceEEEEEecCC-chhhhHhcCCCcccEEEEE-e-CCeeeeee
Q psy5679 58 RGRNPVLAYFFKPSCGFCKQLEPKI---STVSETTSG-VEFVKINVENG-GGEIAREFEVQAVPTVIGF-R-NGDPVDTV 130 (149)
Q Consensus 58 ~~~~~~vv~f~~~~C~~C~~~~~~l---~~~~~~~~~-v~~~~vd~~~~-~~~~~~~~~i~~~Pt~~~~-~-~g~~~~~~ 130 (149)
.++++++|+|+++||++|+.+...+ +++.+...+ ..++.+|.++. +..+++.|++.++|+++++ . +|+.+.+.
T Consensus 15 ~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~g~~l~~~ 94 (114)
T cd02958 15 SEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRTGEVLKVW 94 (114)
T ss_pred hhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCccCcEeEEE
Confidence 7899999999999999999997643 455555543 67778888642 3678999999999999999 4 79999999
Q ss_pred eCCCCHHHHHHHHHHHhc
Q psy5679 131 VGNADQDVIQTLVSKLSQ 148 (149)
Q Consensus 131 ~g~~~~~~l~~~i~~~~~ 148 (149)
.|..+.+++...|++.+.
T Consensus 95 ~G~~~~~~f~~~L~~~~~ 112 (114)
T cd02958 95 SGNITPEDLLSQLIEFLE 112 (114)
T ss_pred cCCCCHHHHHHHHHHHHh
Confidence 999999999999988764
No 90
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.49 E-value=1.9e-13 Score=89.24 Aligned_cols=70 Identities=20% Similarity=0.408 Sum_probs=57.4
Q ss_pred CCCCEEEEEeCCCChhHHhhhHHHHHHHhhcC---------CceEEEEEecCC------------------------chh
Q psy5679 59 GRNPVLAYFFKPSCGFCKQLEPKISTVSETTS---------GVEFVKINVENG------------------------GGE 105 (149)
Q Consensus 59 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~---------~v~~~~vd~~~~------------------------~~~ 105 (149)
++++++|+|||+||++|+.+.|.|.++.+++. ++.++.|+.+.. +..
T Consensus 24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~ 103 (146)
T cd03008 24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRE 103 (146)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHH
Confidence 68999999999999999999999998765432 378888887644 024
Q ss_pred hhHhcCCCcccEEEEE-eCCeeee
Q psy5679 106 IAREFEVQAVPTVIGF-RNGDPVD 128 (149)
Q Consensus 106 ~~~~~~i~~~Pt~~~~-~~g~~~~ 128 (149)
+...|++.++|+++++ ++|+.+.
T Consensus 104 l~~~y~v~~iPt~vlId~~G~Vv~ 127 (146)
T cd03008 104 LEAQFSVEELPTVVVLKPDGDVLA 127 (146)
T ss_pred HHHHcCCCCCCEEEEECCCCcEEe
Confidence 6678999999999999 6898864
No 91
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.47 E-value=4.4e-13 Score=85.29 Aligned_cols=89 Identities=20% Similarity=0.369 Sum_probs=67.5
Q ss_pred hHHHHHcCCCCEEEEEeCCCChhHHhhhHHHHHHHhhcCCceEEEEE---------------------ecCCchhhhHhc
Q psy5679 52 DFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKIN---------------------VENGGGEIAREF 110 (149)
Q Consensus 52 ~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd---------------------~~~~~~~~~~~~ 110 (149)
.+......+++++|+||++||+.|+...|.+.++++.+. +..+.+| .+.+ ..+++.|
T Consensus 12 ~~~~~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~~ 89 (123)
T cd03011 12 QFDLESLSGKPVLVYFWATWCPVCRFTSPTVNQLAADYP-VVSVALRSGDDGAVARFMQKKGYGFPVINDPD-GVISARW 89 (123)
T ss_pred EeeHHHhCCCEEEEEEECCcChhhhhhChHHHHHHhhCC-EEEEEccCCCHHHHHHHHHHcCCCccEEECCC-cHHHHhC
Confidence 333333456899999999999999999999999987753 2222222 1344 5789999
Q ss_pred CCCcccEEEEEeCCeeeeeeeCCCCHHHHHHH
Q psy5679 111 EVQAVPTVIGFRNGDPVDTVVGNADQDVIQTL 142 (149)
Q Consensus 111 ~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~ 142 (149)
++.++|+++++.+|.......|..+.+.|.+.
T Consensus 90 ~i~~~P~~~vid~~gi~~~~~g~~~~~~~~~~ 121 (123)
T cd03011 90 GVSVTPAIVIVDPGGIVFVTTGVTSEWGLRLR 121 (123)
T ss_pred CCCcccEEEEEcCCCeEEEEeccCCHHHHHhh
Confidence 99999999999544477889998999988764
No 92
>KOG0191|consensus
Probab=99.44 E-value=6.1e-13 Score=99.96 Aligned_cols=103 Identities=29% Similarity=0.490 Sum_probs=90.9
Q ss_pred EEEecchhhHHHHH-cCCCCEEEEEeCCCChhHHhhhHHHHHHHhhcC--C-ceEEEEEecCCchhhhHhcCCCcccEEE
Q psy5679 44 YLIIEKIDDFKQTI-RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTS--G-VEFVKINVENGGGEIAREFEVQAVPTVI 119 (149)
Q Consensus 44 v~~i~~~~~~~~~~-~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~--~-v~~~~vd~~~~~~~~~~~~~i~~~Pt~~ 119 (149)
+..+.. +++...+ ..+..++|.||+|||++|+.+.|.+++++..+. . +.+..+|++.. ..++.++++.++|++.
T Consensus 146 v~~l~~-~~~~~~~~~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~-~~~~~~~~v~~~Pt~~ 223 (383)
T KOG0191|consen 146 VFELTK-DNFDETVKDSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVH-KSLASRLEVRGYPTLK 223 (383)
T ss_pred eEEccc-cchhhhhhccCcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccchH-HHHhhhhcccCCceEE
Confidence 666665 7777766 789999999999999999999999999999885 3 99999999977 8999999999999999
Q ss_pred EEeCCee-eeeeeCCCCHHHHHHHHHHHhc
Q psy5679 120 GFRNGDP-VDTVVGNADQDVIQTLVSKLSQ 148 (149)
Q Consensus 120 ~~~~g~~-~~~~~g~~~~~~l~~~i~~~~~ 148 (149)
+|++|.. ...+.|..+.+.+..|+++..+
T Consensus 224 ~f~~~~~~~~~~~~~R~~~~i~~~v~~~~~ 253 (383)
T KOG0191|consen 224 LFPPGEEDIYYYSGLRDSDSIVSFVEKKER 253 (383)
T ss_pred EecCCCcccccccccccHHHHHHHHHhhcC
Confidence 9988877 7788888999999999987654
No 93
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.44 E-value=6.5e-13 Score=85.73 Aligned_cols=70 Identities=24% Similarity=0.472 Sum_probs=56.8
Q ss_pred CCCCEEEEEeCCCChhHHhhhHHHHHHHhhcC----CceEEEEEecCCc------------------------hhhhHhc
Q psy5679 59 GRNPVLAYFFKPSCGFCKQLEPKISTVSETTS----GVEFVKINVENGG------------------------GEIAREF 110 (149)
Q Consensus 59 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~----~v~~~~vd~~~~~------------------------~~~~~~~ 110 (149)
+++.++|.||++||++|+...|.++++.+.++ ++.++.++.+... ..+.+.|
T Consensus 16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 95 (132)
T cd02964 16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQF 95 (132)
T ss_pred CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHc
Confidence 68999999999999999999999999887665 3677777776530 2456679
Q ss_pred CCCcccEEEEE-eCCeeee
Q psy5679 111 EVQAVPTVIGF-RNGDPVD 128 (149)
Q Consensus 111 ~i~~~Pt~~~~-~~g~~~~ 128 (149)
++.++|+++++ ++|+.+.
T Consensus 96 ~v~~iPt~~lid~~G~iv~ 114 (132)
T cd02964 96 KVEGIPTLVVLKPDGDVVT 114 (132)
T ss_pred CCCCCCEEEEECCCCCEEc
Confidence 99999999999 5787764
No 94
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.44 E-value=7.7e-13 Score=85.20 Aligned_cols=71 Identities=27% Similarity=0.487 Sum_probs=57.7
Q ss_pred CCCCEEEEEeCCCChhHHhhhHHHHHHHhhcC----CceEEEEEecCCc-----------------------hhhhHhcC
Q psy5679 59 GRNPVLAYFFKPSCGFCKQLEPKISTVSETTS----GVEFVKINVENGG-----------------------GEIAREFE 111 (149)
Q Consensus 59 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~----~v~~~~vd~~~~~-----------------------~~~~~~~~ 111 (149)
++++++|+||++||++|+...|.+.++.+++. ++.++.++.|... ..+++.|+
T Consensus 17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (131)
T cd03009 17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFK 96 (131)
T ss_pred CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcC
Confidence 67899999999999999999999998877764 3677777766440 24677899
Q ss_pred CCcccEEEEE-eCCeeeee
Q psy5679 112 VQAVPTVIGF-RNGDPVDT 129 (149)
Q Consensus 112 i~~~Pt~~~~-~~g~~~~~ 129 (149)
+.++|+++++ ++|+.+.+
T Consensus 97 v~~~P~~~lid~~G~i~~~ 115 (131)
T cd03009 97 IEGIPTLIILDADGEVVTT 115 (131)
T ss_pred CCCCCEEEEECCCCCEEcc
Confidence 9999999999 58887643
No 95
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=99.42 E-value=1.5e-12 Score=99.90 Aligned_cols=103 Identities=19% Similarity=0.346 Sum_probs=87.0
Q ss_pred EEecchhhHHHHHcCC--CCEEEEEeCCCChhHHhhhHHH---HHHHhhcCCceEEEEEecCCc---hhhhHhcCCCccc
Q psy5679 45 LIIEKIDDFKQTIRGR--NPVLAYFFKPSCGFCKQLEPKI---STVSETTSGVEFVKINVENGG---GEIAREFEVQAVP 116 (149)
Q Consensus 45 ~~i~~~~~~~~~~~~~--~~~vv~f~~~~C~~C~~~~~~l---~~~~~~~~~v~~~~vd~~~~~---~~~~~~~~i~~~P 116 (149)
+.+++..++++.+.++ ++|+++||++||-.|+.+++.. .+.+.+.+++.+.++|.++++ .++-++|++-+.|
T Consensus 457 q~~s~~~~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lLk~~~~~G~P 536 (569)
T COG4232 457 QPISPLAELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALLKRLGVFGVP 536 (569)
T ss_pred hccCCHHHHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHHHHcCCCCCC
Confidence 5667656899999444 5999999999999999999976 366667778999999999884 3567899999999
Q ss_pred EEEEEe-CCeeeeeeeCCCCHHHHHHHHHHHh
Q psy5679 117 TVIGFR-NGDPVDTVVGNADQDVIQTLVSKLS 147 (149)
Q Consensus 117 t~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~~ 147 (149)
++++|. +|++.....|..+.+.+.+++++..
T Consensus 537 ~~~ff~~~g~e~~~l~gf~~a~~~~~~l~~~~ 568 (569)
T COG4232 537 TYLFFGPQGSEPEILTGFLTADAFLEHLERAA 568 (569)
T ss_pred EEEEECCCCCcCcCCcceecHHHHHHHHHHhc
Confidence 999995 8888778999999999999998753
No 96
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.40 E-value=2.6e-12 Score=82.22 Aligned_cols=75 Identities=15% Similarity=0.221 Sum_probs=62.6
Q ss_pred CCCCEEEEEeCCCChhHHhhhHHHHHHHhhcCC--ceEEEEEecC-----C---------------------chhhhHhc
Q psy5679 59 GRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG--VEFVKINVEN-----G---------------------GGEIAREF 110 (149)
Q Consensus 59 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~--v~~~~vd~~~-----~---------------------~~~~~~~~ 110 (149)
++++++|+||++||++|....|.|+++.+++++ +.++.|+.+. . ...+.+.|
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~ 101 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRAY 101 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHHh
Confidence 578999999999999999999999999999985 7788775421 1 13466789
Q ss_pred CCCcccEEEEE-eCCeeeeeeeCC
Q psy5679 111 EVQAVPTVIGF-RNGDPVDTVVGN 133 (149)
Q Consensus 111 ~i~~~Pt~~~~-~~g~~~~~~~g~ 133 (149)
++.++|+.+++ ++|+.+..+.|.
T Consensus 102 ~v~~~P~~~vid~~G~v~~~~~G~ 125 (126)
T cd03012 102 GNQYWPALYLIDPTGNVRHVHFGE 125 (126)
T ss_pred CCCcCCeEEEECCCCcEEEEEecC
Confidence 99999999999 689999888873
No 97
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.40 E-value=3.4e-12 Score=83.61 Aligned_cols=78 Identities=23% Similarity=0.460 Sum_probs=65.7
Q ss_pred cCCCCEEEEEeCC-CChhHHhhhHHHHHHHhhcCC--ceEEEEEecCC--------------------chhhhHhcCCC-
Q psy5679 58 RGRNPVLAYFFKP-SCGFCKQLEPKISTVSETTSG--VEFVKINVENG--------------------GGEIAREFEVQ- 113 (149)
Q Consensus 58 ~~~~~~vv~f~~~-~C~~C~~~~~~l~~~~~~~~~--v~~~~vd~~~~--------------------~~~~~~~~~i~- 113 (149)
.++++++|.||++ ||++|+...|.+.++.+.+++ +.++.|..+.. +..+.+.|++.
T Consensus 26 ~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 105 (146)
T PF08534_consen 26 FKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALGVTI 105 (146)
T ss_dssp GTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTTCEE
T ss_pred hCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhCCcc
Confidence 3789999999999 999999999999999888654 88888876544 14677889988
Q ss_pred --------cccEEEEE-eCCeeeeeeeCCCC
Q psy5679 114 --------AVPTVIGF-RNGDPVDTVVGNAD 135 (149)
Q Consensus 114 --------~~Pt~~~~-~~g~~~~~~~g~~~ 135 (149)
++|+++++ ++|+.++...|..+
T Consensus 106 ~~~~~~~~~~P~~~lId~~G~V~~~~~g~~~ 136 (146)
T PF08534_consen 106 MEDPGNGFGIPTTFLIDKDGKVVYRHVGPDP 136 (146)
T ss_dssp ECCTTTTSSSSEEEEEETTSBEEEEEESSBT
T ss_pred ccccccCCeecEEEEEECCCEEEEEEeCCCC
Confidence 99998877 89999999988655
No 98
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.39 E-value=3.6e-12 Score=79.28 Aligned_cols=74 Identities=30% Similarity=0.564 Sum_probs=64.1
Q ss_pred CCCCEEEEEeCCCChhHHhhhHHHHHHHhhcC--CceEEEEEecCC----------------------chhhhHhcCCCc
Q psy5679 59 GRNPVLAYFFKPSCGFCKQLEPKISTVSETTS--GVEFVKINVENG----------------------GGEIAREFEVQA 114 (149)
Q Consensus 59 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~~----------------------~~~~~~~~~i~~ 114 (149)
.+++++|+||++||+.|+...+.+.++.+.+. ++.++.|+++.. ...+.+.|++.+
T Consensus 18 ~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (116)
T cd02966 18 KGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVRG 97 (116)
T ss_pred CCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcCc
Confidence 47899999999999999999999999999994 489999998761 146788999999
Q ss_pred ccEEEEE-eCCeeeeeeeC
Q psy5679 115 VPTVIGF-RNGDPVDTVVG 132 (149)
Q Consensus 115 ~Pt~~~~-~~g~~~~~~~g 132 (149)
+|+++++ ++|+.+..+.|
T Consensus 98 ~P~~~l~d~~g~v~~~~~g 116 (116)
T cd02966 98 LPTTFLIDRDGRIRARHVG 116 (116)
T ss_pred cceEEEECCCCcEEEEecC
Confidence 9999988 68988877765
No 99
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=99.38 E-value=7.7e-12 Score=87.78 Aligned_cols=90 Identities=16% Similarity=0.164 Sum_probs=70.7
Q ss_pred CCCCEEEEEeCCCChhHHhhhHHHHHHHhhcCC--ceEEEEEecC-------C---chhhh-HhcC--------------
Q psy5679 59 GRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG--VEFVKINVEN-------G---GGEIA-REFE-------------- 111 (149)
Q Consensus 59 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~--v~~~~vd~~~-------~---~~~~~-~~~~-------------- 111 (149)
++++++|.||++||++|....|.|.++.+++++ +.++.|+++. . -..++ ++++
T Consensus 98 kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g~~fPvl~~~D~~G~ 177 (236)
T PLN02399 98 KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDVNGP 177 (236)
T ss_pred CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCccccccCCCcc
Confidence 579999999999999999999999999999975 8888888641 1 01111 1211
Q ss_pred --------------------CCcccEEEEE-eCCeeeeeeeCCCCHHHHHHHHHHHhc
Q psy5679 112 --------------------VQAVPTVIGF-RNGDPVDTVVGNADQDVIQTLVSKLSQ 148 (149)
Q Consensus 112 --------------------i~~~Pt~~~~-~~g~~~~~~~g~~~~~~l~~~i~~~~~ 148 (149)
+...|+.+++ ++|+.+.++.|..+.++++..|+++++
T Consensus 178 ~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~~~~~le~~I~~lL~ 235 (236)
T PLN02399 178 STAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQKLLA 235 (236)
T ss_pred hhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCCCHHHHHHHHHHHhc
Confidence 1234777777 899999999999999999999998875
No 100
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=99.37 E-value=1.1e-11 Score=88.35 Aligned_cols=101 Identities=19% Similarity=0.378 Sum_probs=79.0
Q ss_pred eEEEecchhhHHHHH---cCCCCEEEEEeCCCChhHHhhhHHHHHHHhhcCCceEEEEEecCCchhhhHhcCCCcccEEE
Q psy5679 43 AYLIIEKIDDFKQTI---RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTVI 119 (149)
Q Consensus 43 ~v~~i~~~~~~~~~~---~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~~i~~~Pt~~ 119 (149)
.|.++.+.++|.+.+ .++..|||.||.+.++.|..+...|..+|.+|+.++|++|..... + +...|.+..+|+++
T Consensus 126 ~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~vKFvkI~a~~~-~-~~~~f~~~~LPtll 203 (265)
T PF02114_consen 126 EVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYPEVKFVKIRASKC-P-ASENFPDKNLPTLL 203 (265)
T ss_dssp SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TTSEEEEEEECGC-C-TTTTS-TTC-SEEE
T ss_pred eEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCceEEEEEehhcc-C-cccCCcccCCCEEE
Confidence 377887778888888 245679999999999999999999999999999999999999988 5 78899999999999
Q ss_pred EEeCCeeeeeeeC-------CCCHHHHHHHHHH
Q psy5679 120 GFRNGDPVDTVVG-------NADQDVIQTLVSK 145 (149)
Q Consensus 120 ~~~~g~~~~~~~g-------~~~~~~l~~~i~~ 145 (149)
+|++|..+..+.| ..+..+|+.+|.+
T Consensus 204 vYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~ 236 (265)
T PF02114_consen 204 VYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIE 236 (265)
T ss_dssp EEETTEEEEEECTGGGCT-TT--HHHHHHHHHT
T ss_pred EEECCEEEEeEEehHHhcCCCCCHHHHHHHHHH
Confidence 9999998876654 2455677777765
No 101
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.37 E-value=4.1e-12 Score=79.75 Aligned_cols=69 Identities=22% Similarity=0.502 Sum_probs=52.1
Q ss_pred CCCCEEEEEeCCCChhHHhhhHHHHHHHhhcCC-ceEEEEEec---CC----------------chhhhHhcCCCcccEE
Q psy5679 59 GRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVE---NG----------------GGEIAREFEVQAVPTV 118 (149)
Q Consensus 59 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~---~~----------------~~~~~~~~~i~~~Pt~ 118 (149)
++++++|+||++||++|+...|.++++.+.+.+ +.++.+.-+ +. +..+.+.|++..+|+.
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~P~~ 99 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLASDGEKAEHQRFLKKHGLEAFPYVLSAELGMAYQVSKLPYA 99 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhCCCCCcEEecHHHHhhcCCCCcCeE
Confidence 478999999999999999999999999888765 666655211 11 1345567788888888
Q ss_pred EEE-eCCeee
Q psy5679 119 IGF-RNGDPV 127 (149)
Q Consensus 119 ~~~-~~g~~~ 127 (149)
+++ ++|+.+
T Consensus 100 ~vid~~G~v~ 109 (114)
T cd02967 100 VLLDEAGVIA 109 (114)
T ss_pred EEECCCCeEE
Confidence 887 577764
No 102
>PTZ00056 glutathione peroxidase; Provisional
Probab=99.36 E-value=5.2e-12 Score=86.91 Aligned_cols=90 Identities=9% Similarity=0.161 Sum_probs=68.6
Q ss_pred CCCCEEEEEeCCCChhHHhhhHHHHHHHhhcCC--ceEEEEEecC-------C---chhhhHhcCC--------------
Q psy5679 59 GRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG--VEFVKINVEN-------G---GGEIAREFEV-------------- 112 (149)
Q Consensus 59 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~--v~~~~vd~~~-------~---~~~~~~~~~i-------------- 112 (149)
++++++|.||++||++|....|.|.++.+++.+ +.++.|+++. . -..+++++++
T Consensus 38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~~~fpvl~d~~v~g~~ 117 (199)
T PTZ00056 38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKDIRKFNDKNKIKYNFFEPIEVNGEN 117 (199)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHHHHHHHHHHcCCCceeeeeeeccCCc
Confidence 578999999999999999999999999999975 8899998631 1 0223333332
Q ss_pred ----------------------Cccc----EEEEEeCCeeeeeeeCCCCHHHHHHHHHHHhc
Q psy5679 113 ----------------------QAVP----TVIGFRNGDPVDTVVGNADQDVIQTLVSKLSQ 148 (149)
Q Consensus 113 ----------------------~~~P----t~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~~ 148 (149)
..+| ++++-++|+.+.++.|..+.+++...|+.+++
T Consensus 118 ~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~g~~~~~~l~~~I~~ll~ 179 (199)
T PTZ00056 118 THELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFSPRTEPLELEKKIAELLG 179 (199)
T ss_pred cCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeCCCCCHHHHHHHHHHHHH
Confidence 1222 34444899999999998899999999998875
No 103
>PLN02412 probable glutathione peroxidase
Probab=99.34 E-value=1.4e-11 Score=82.60 Aligned_cols=90 Identities=13% Similarity=0.171 Sum_probs=70.7
Q ss_pred CCCCEEEEEeCCCChhHHhhhHHHHHHHhhcCC--ceEEEEEecC-------Cchhh----hHh----------------
Q psy5679 59 GRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG--VEFVKINVEN-------GGGEI----ARE---------------- 109 (149)
Q Consensus 59 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~--v~~~~vd~~~-------~~~~~----~~~---------------- 109 (149)
.+++++|.||++||+.|....+.|.++.+++++ +.++.|+++. ...++ .++
T Consensus 28 ~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~~~~fpvl~~~d~~g~ 107 (167)
T PLN02412 28 KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNEEIQQTVCTRFKAEFPIFDKVDVNGK 107 (167)
T ss_pred CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHHHHHHHHHHccCCCCceEeEEeeCCC
Confidence 578999999999999999999999999999986 8888887642 10111 111
Q ss_pred -----cC-------------CCcccEEEEE-eCCeeeeeeeCCCCHHHHHHHHHHHhc
Q psy5679 110 -----FE-------------VQAVPTVIGF-RNGDPVDTVVGNADQDVIQTLVSKLSQ 148 (149)
Q Consensus 110 -----~~-------------i~~~Pt~~~~-~~g~~~~~~~g~~~~~~l~~~i~~~~~ 148 (149)
|+ +...|+.+++ ++|+.+.++.|..+.+++...|+.+++
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~~~~~~l~~~i~~~l~ 165 (167)
T PLN02412 108 NTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPTTSPLKIEKDIQNLLG 165 (167)
T ss_pred CCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCCCCHHHHHHHHHHHHh
Confidence 11 3345787777 899999999999999999999998875
No 104
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=99.33 E-value=2.5e-11 Score=77.46 Aligned_cols=79 Identities=10% Similarity=0.205 Sum_probs=52.7
Q ss_pred hHHHHHcCCCCEEEEEeCCCChhHHhhhHHH---HHHHhhcC-CceEEEEEecCCchhhhHhcCCCcccEEEEE-eCCee
Q psy5679 52 DFKQTIRGRNPVLAYFFKPSCGFCKQLEPKI---STVSETTS-GVEFVKINVENGGGEIAREFEVQAVPTVIGF-RNGDP 126 (149)
Q Consensus 52 ~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l---~~~~~~~~-~v~~~~vd~~~~~~~~~~~~~i~~~Pt~~~~-~~g~~ 126 (149)
.++.+..++++++|+|+++||++|+.+...+ .++.+... ++..+.++.+..+.... ..+ .++|+++|+ .+|+.
T Consensus 15 al~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~~~-~~g-~~vPtivFld~~g~v 92 (130)
T cd02960 15 GLYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKNLS-PDG-QYVPRIMFVDPSLTV 92 (130)
T ss_pred HHHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCCcC-ccC-cccCeEEEECCCCCC
Confidence 3334447899999999999999999999865 34544443 35555666542211121 233 689999999 77877
Q ss_pred eeeeeC
Q psy5679 127 VDTVVG 132 (149)
Q Consensus 127 ~~~~~g 132 (149)
+....|
T Consensus 93 i~~i~G 98 (130)
T cd02960 93 RADITG 98 (130)
T ss_pred cccccc
Confidence 655554
No 105
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.31 E-value=4e-11 Score=81.97 Aligned_cols=86 Identities=23% Similarity=0.422 Sum_probs=63.8
Q ss_pred cCCCCEEEEEeCCCChhHHhhhHHHHHHHhhcCCceEEEEEecCC-------------------chhhhHhcCCCcccEE
Q psy5679 58 RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENG-------------------GGEIAREFEVQAVPTV 118 (149)
Q Consensus 58 ~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~-------------------~~~~~~~~~i~~~Pt~ 118 (149)
.++++++|+||++||+.|+...|.+.++.+.. ++.++.+..+.. ..++.+.|++..+|+.
T Consensus 72 ~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~-~~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~~ 150 (189)
T TIGR02661 72 APGRPTLLMFTAPSCPVCDKLFPIIKSIARAE-ETDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPYG 150 (189)
T ss_pred cCCCEEEEEEECCCChhHHHHHHHHHHHHHhc-CCcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccceE
Confidence 36789999999999999999999999988765 344444442210 1467788999999988
Q ss_pred EEE-eCCeeeeeeeCC-CCHHHHHHHHHHH
Q psy5679 119 IGF-RNGDPVDTVVGN-ADQDVIQTLVSKL 146 (149)
Q Consensus 119 ~~~-~~g~~~~~~~g~-~~~~~l~~~i~~~ 146 (149)
+++ ++|+.... |. ...+.++++++..
T Consensus 151 ~lID~~G~I~~~--g~~~~~~~le~ll~~l 178 (189)
T TIGR02661 151 VLLDQDGKIRAK--GLTNTREHLESLLEAD 178 (189)
T ss_pred EEECCCCeEEEc--cCCCCHHHHHHHHHHH
Confidence 777 78988654 43 4667788877654
No 106
>smart00594 UAS UAS domain.
Probab=99.30 E-value=5.7e-11 Score=75.70 Aligned_cols=86 Identities=15% Similarity=0.281 Sum_probs=68.8
Q ss_pred cCCCCEEEEEeCCCChhHHhhhHHH---HHHHhhcCC-ceEEEEEecCC-chhhhHhcCCCcccEEEEE-eCC-----ee
Q psy5679 58 RGRNPVLAYFFKPSCGFCKQLEPKI---STVSETTSG-VEFVKINVENG-GGEIAREFEVQAVPTVIGF-RNG-----DP 126 (149)
Q Consensus 58 ~~~~~~vv~f~~~~C~~C~~~~~~l---~~~~~~~~~-v~~~~vd~~~~-~~~~~~~~~i~~~Pt~~~~-~~g-----~~ 126 (149)
.++|+++|+|+++||++|..+...+ .++.+.... +.+..+|++.. +..++.+|++.++|+++++ ++| +.
T Consensus 25 ~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~l~~~~g~~~~~~ 104 (122)
T smart00594 25 RQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQRVSQFYKLDSFPYVAIVDPRTGQRVIEW 104 (122)
T ss_pred hhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhHHHHHHhcCcCCCCEEEEEecCCCceeEEE
Confidence 6788999999999999999998854 455555543 77777887644 3678999999999999999 554 35
Q ss_pred eeeeeCCCCHHHHHHHH
Q psy5679 127 VDTVVGNADQDVIQTLV 143 (149)
Q Consensus 127 ~~~~~g~~~~~~l~~~i 143 (149)
+.+..|..+.+++...+
T Consensus 105 ~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 105 VGVVEGEISPEELMTFL 121 (122)
T ss_pred eccccCCCCHHHHHHhh
Confidence 67888999999988765
No 107
>KOG1672|consensus
Probab=99.28 E-value=2.3e-11 Score=81.28 Aligned_cols=91 Identities=25% Similarity=0.488 Sum_probs=85.0
Q ss_pred eeEEEecchhhHHHHHcCCCCEEEEEeCCCChhHHhhhHHHHHHHhhcCCceEEEEEecCCchhhhHhcCCCcccEEEEE
Q psy5679 42 MAYLIIEKIDDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTVIGF 121 (149)
Q Consensus 42 ~~v~~i~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~~i~~~Pt~~~~ 121 (149)
+.+.+|.+..+|-+...+..-||+.||.+.-..|+.+...|+.+|+.+-+..|++||+.+. |-++.+++|+.+|++++|
T Consensus 66 G~y~ev~~Ekdf~~~~~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~eTrFikvnae~~-PFlv~kL~IkVLP~v~l~ 144 (211)
T KOG1672|consen 66 GEYEEVASEKDFFEEVKKSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVETRFIKVNAEKA-PFLVTKLNIKVLPTVALF 144 (211)
T ss_pred ceEEEeccHHHHHHHhhcCceEEEEEEcCCCcceehHHHHHHHHHHhcccceEEEEecccC-ceeeeeeeeeEeeeEEEE
Confidence 4488888888998888888889999999999999999999999999999999999999999 999999999999999999
Q ss_pred eCCeeeeeeeCC
Q psy5679 122 RNGDPVDTVVGN 133 (149)
Q Consensus 122 ~~g~~~~~~~g~ 133 (149)
++|+.+.++.|+
T Consensus 145 k~g~~~D~iVGF 156 (211)
T KOG1672|consen 145 KNGKTVDYVVGF 156 (211)
T ss_pred EcCEEEEEEeeH
Confidence 999999888874
No 108
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=99.27 E-value=3.7e-11 Score=81.25 Aligned_cols=84 Identities=12% Similarity=0.140 Sum_probs=64.7
Q ss_pred cCCCCEEEEEeCCCChhHHhhhHHHHHHHhhcCCceE------EEEEecCC----------------------------c
Q psy5679 58 RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEF------VKINVENG----------------------------G 103 (149)
Q Consensus 58 ~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~------~~vd~~~~----------------------------~ 103 (149)
-.++.++|.||+.||++|+...|.+.+++.. ++.+ +.||.++. +
T Consensus 57 l~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~--~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~~ 134 (184)
T TIGR01626 57 LAGKVRVVHHIAGRTSAKEXNASLIDAIKAA--KFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDDK 134 (184)
T ss_pred cCCCEEEEEEEecCCChhhccchHHHHHHHc--CCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECCc
Confidence 3699999999999999999999999999654 2334 55555431 0
Q ss_pred hhhhHhcCCCcccEE-EEE-eCCeeeeeeeCCCCHHHHHHHH
Q psy5679 104 GEIAREFEVQAVPTV-IGF-RNGDPVDTVVGNADQDVIQTLV 143 (149)
Q Consensus 104 ~~~~~~~~i~~~Pt~-~~~-~~g~~~~~~~g~~~~~~l~~~i 143 (149)
..+...|++.++|+. +++ ++|+.+..+.|..+.+++.+.+
T Consensus 135 g~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~~~ 176 (184)
T TIGR01626 135 GAVKNAWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDIQTVI 176 (184)
T ss_pred chHHHhcCCCCCCceEEEECCCCcEEEEEeCCCCHHHHHHHH
Confidence 235568999999876 455 8999999999988888876633
No 109
>KOG0914|consensus
Probab=99.26 E-value=1.5e-11 Score=83.55 Aligned_cols=87 Identities=20% Similarity=0.304 Sum_probs=75.2
Q ss_pred EEEecchhhHHHHH--cCCCCEEEEEeCCCChhHHhhhHHHHHHHhhcCC--ceEEEEEecCCchhhhHhcCCC------
Q psy5679 44 YLIIEKIDDFKQTI--RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG--VEFVKINVENGGGEIAREFEVQ------ 113 (149)
Q Consensus 44 v~~i~~~~~~~~~~--~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~--v~~~~vd~~~~~~~~~~~~~i~------ 113 (149)
+.-.++.+.+++.+ .+...|+|.|++.|.+.|+++.|.+.++..+|.. ++|.+||+... ++.+++|+|.
T Consensus 126 ikyf~~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrf-pd~a~kfris~s~~sr 204 (265)
T KOG0914|consen 126 IKYFTNMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRF-PDVAAKFRISLSPGSR 204 (265)
T ss_pred eeeecchhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccC-cChHHheeeccCcccc
Confidence 45555556666666 6788999999999999999999999999999986 99999999999 9999999875
Q ss_pred cccEEEEEeCCeeeeeee
Q psy5679 114 AVPTVIGFRNGDPVDTVV 131 (149)
Q Consensus 114 ~~Pt~~~~~~g~~~~~~~ 131 (149)
..||+++|++|+++.+..
T Consensus 205 QLPT~ilFq~gkE~~RrP 222 (265)
T KOG0914|consen 205 QLPTYILFQKGKEVSRRP 222 (265)
T ss_pred cCCeEEEEccchhhhcCc
Confidence 789999999999876443
No 110
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=99.23 E-value=2e-10 Score=77.24 Aligned_cols=90 Identities=17% Similarity=0.317 Sum_probs=72.0
Q ss_pred CCCCEEEEEeCCCChhHHhhhHHHHHHHhhcCC--ceEEEEEecC-------C---------------------chhhhH
Q psy5679 59 GRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG--VEFVKINVEN-------G---------------------GGEIAR 108 (149)
Q Consensus 59 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~--v~~~~vd~~~-------~---------------------~~~~~~ 108 (149)
.++++||+||++||+.|....+.+.++.+++++ +.++.|..+. . ...+.+
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~ 103 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVAK 103 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHHH
Confidence 678999999999999999999999999999974 8888887753 1 134567
Q ss_pred hcCCCcccEEEEE-eCCeeeeeee---------CCCCHHHHHHHHHHHhc
Q psy5679 109 EFEVQAVPTVIGF-RNGDPVDTVV---------GNADQDVIQTLVSKLSQ 148 (149)
Q Consensus 109 ~~~i~~~Pt~~~~-~~g~~~~~~~---------g~~~~~~l~~~i~~~~~ 148 (149)
.|++..+|+++++ ++|+.+.... +..+..++.+.|+.++.
T Consensus 104 ~~~v~~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~ 153 (171)
T cd02969 104 AYGAACTPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALLA 153 (171)
T ss_pred HcCCCcCCcEEEECCCCeEEEeecccCCcccccccccHHHHHHHHHHHHc
Confidence 8999999999988 6888775421 22466889999988764
No 111
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=99.23 E-value=1.4e-10 Score=67.75 Aligned_cols=72 Identities=26% Similarity=0.548 Sum_probs=58.2
Q ss_pred EEeCCCChhHHhhhHHHHHHHhhcCCceEEEEEecCCchhhhHhcCCCcccEEEEEeCCeeeeeeeC-CCCHHHHHHHHH
Q psy5679 66 YFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTVIGFRNGDPVDTVVG-NADQDVIQTLVS 144 (149)
Q Consensus 66 ~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g-~~~~~~l~~~i~ 144 (149)
.+++++|+.|..+...+++++..++ +.+-.+|.... +++ .+||+.++|++++ ||+. .+.| ..+.+++.+||+
T Consensus 4 ~v~~~~C~~C~~~~~~~~~~~~~~~-i~~ei~~~~~~-~~~-~~ygv~~vPalvI--ng~~--~~~G~~p~~~el~~~l~ 76 (76)
T PF13192_consen 4 KVFSPGCPYCPELVQLLKEAAEELG-IEVEIIDIEDF-EEI-EKYGVMSVPALVI--NGKV--VFVGRVPSKEELKELLE 76 (76)
T ss_dssp EEECSSCTTHHHHHHHHHHHHHHTT-EEEEEEETTTH-HHH-HHTT-SSSSEEEE--TTEE--EEESS--HHHHHHHHHH
T ss_pred EEeCCCCCCcHHHHHHHHHHHHhcC-CeEEEEEccCH-HHH-HHcCCCCCCEEEE--CCEE--EEEecCCCHHHHHHHhC
Confidence 3468889999999999999999995 77777777666 666 9999999999988 9986 5778 688999999885
No 112
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=99.22 E-value=1.6e-10 Score=66.57 Aligned_cols=69 Identities=22% Similarity=0.502 Sum_probs=54.8
Q ss_pred EEEEeCCCChhHHhhhHHHHHHHhhcCCceEEEEEecCCchh----hhHhcCCCcccEEEEEeCCeeeeeeeCCCCHHHH
Q psy5679 64 LAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGE----IAREFEVQAVPTVIGFRNGDPVDTVVGNADQDVI 139 (149)
Q Consensus 64 vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~----~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l 139 (149)
+.+|+++||++|+.+.+.+++ .++.+..+|++.+ +. +.+.+++.++|++++ +|+. ..| .+.+.|
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~-----~~i~~~~vdi~~~-~~~~~~~~~~~~~~~vP~~~~--~~~~---~~g-~~~~~i 69 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS-----KGIAFEEIDVEKD-SAAREEVLKVLGQRGVPVIVI--GHKI---IVG-FDPEKL 69 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH-----CCCeEEEEeccCC-HHHHHHHHHHhCCCcccEEEE--CCEE---Eee-CCHHHH
Confidence 568999999999999988876 2578888999876 43 566799999999988 4654 666 588888
Q ss_pred HHHHH
Q psy5679 140 QTLVS 144 (149)
Q Consensus 140 ~~~i~ 144 (149)
.++|+
T Consensus 70 ~~~i~ 74 (74)
T TIGR02196 70 DQLLE 74 (74)
T ss_pred HHHhC
Confidence 88763
No 113
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=99.19 E-value=7.2e-11 Score=70.02 Aligned_cols=70 Identities=27% Similarity=0.448 Sum_probs=51.9
Q ss_pred hhHHHHHcCCCCEEEEEeCCCChhHHhhhHHH---HHHHh-hcCCceEEEEEecCCchhhhHhcCCCcccEEEEEe
Q psy5679 51 DDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKI---STVSE-TTSGVEFVKINVENGGGEIAREFEVQAVPTVIGFR 122 (149)
Q Consensus 51 ~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l---~~~~~-~~~~v~~~~vd~~~~~~~~~~~~~i~~~Pt~~~~~ 122 (149)
+.++.+..++++++|+|+++||++|+.+...+ .++.+ ..+++.++.+|.+.. ..... +...++|+++++.
T Consensus 8 ~al~~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~-~~~~~-~~~~~~P~~~~ld 81 (82)
T PF13899_consen 8 EALAEAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDE-DPNAQ-FDRQGYPTFFFLD 81 (82)
T ss_dssp HHHHHHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTH-HHHHH-HHHCSSSEEEEEE
T ss_pred HHHHHHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCC-ChhHH-hCCccCCEEEEeC
Confidence 34444448899999999999999999999887 45655 233488999999877 43332 2226799999873
No 114
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=5e-10 Score=72.52 Aligned_cols=95 Identities=19% Similarity=0.376 Sum_probs=76.4
Q ss_pred hhHHHHHcCCCCEEEEEeCCCChhHHhhhHHH---HHHHhhcCC-ceEEEEEecCC---------------chhhhHhcC
Q psy5679 51 DDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKI---STVSETTSG-VEFVKINVENG---------------GGEIAREFE 111 (149)
Q Consensus 51 ~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l---~~~~~~~~~-v~~~~vd~~~~---------------~~~~~~~~~ 111 (149)
++.+.+...++-.+++|.++.|++|..+...+ +++.+-+.+ +.++.+++... ..++++.|+
T Consensus 33 ~d~ksi~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~ 112 (182)
T COG2143 33 DDNKSISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFA 112 (182)
T ss_pred HHHHhcCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhc
Confidence 44555557899999999999999999998876 455555555 77888876432 258999999
Q ss_pred CCcccEEEEE-eCCeeeeeeeCCCCHHHHHHHHHH
Q psy5679 112 VQAVPTVIGF-RNGDPVDTVVGNADQDVIQTLVSK 145 (149)
Q Consensus 112 i~~~Pt~~~~-~~g~~~~~~~g~~~~~~l~~~i~~ 145 (149)
++++|++++| ++|+.+....|.++++++...++-
T Consensus 113 vrstPtfvFfdk~Gk~Il~lPGY~ppe~Fl~vlkY 147 (182)
T COG2143 113 VRSTPTFVFFDKTGKTILELPGYMPPEQFLAVLKY 147 (182)
T ss_pred cccCceEEEEcCCCCEEEecCCCCCHHHHHHHHHH
Confidence 9999999999 678999999999999988776553
No 115
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=99.19 E-value=1.8e-10 Score=71.40 Aligned_cols=85 Identities=32% Similarity=0.646 Sum_probs=70.8
Q ss_pred CCCEEEEEeCCCChhHHhhhHHHHHHHhhcCC-ceEEEEEec-CCchhhhHhcC--CCcccEEEEEeCCeeeeeeeC--C
Q psy5679 60 RNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVE-NGGGEIAREFE--VQAVPTVIGFRNGDPVDTVVG--N 133 (149)
Q Consensus 60 ~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~-~~~~~~~~~~~--i~~~Pt~~~~~~g~~~~~~~g--~ 133 (149)
++++++.||++||++|+...|.+.++++.++. +.++.+|.. .. ..+...|+ +..+|+++++.+|+......+ .
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 110 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDEN-PDLAAEFGVAVRSIPTLLLFKDGKEVDRLVGGKV 110 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCC-hHHHHHHhhhhccCCeEEEEeCcchhhhhhhccc
Confidence 88999999999999999999999999999986 999999997 77 89999999 999999998888876555554 3
Q ss_pred CCHHHHHHHHHH
Q psy5679 134 ADQDVIQTLVSK 145 (149)
Q Consensus 134 ~~~~~l~~~i~~ 145 (149)
.....+......
T Consensus 111 ~~~~~~~~~~~~ 122 (127)
T COG0526 111 LPKEALIDALGE 122 (127)
T ss_pred CCHHHHHHHhcc
Confidence 555555554443
No 116
>KOG0913|consensus
Probab=99.18 E-value=1.2e-11 Score=84.82 Aligned_cols=97 Identities=20% Similarity=0.387 Sum_probs=88.4
Q ss_pred EEEecchhhHHHHHcCCCCEEEEEeCCCChhHHhhhHHHHHHHhhcCC--ceEEEEEecCCchhhhHhcCCCcccEEEEE
Q psy5679 44 YLIIEKIDDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG--VEFVKINVENGGGEIAREFEVQAVPTVIGF 121 (149)
Q Consensus 44 v~~i~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~--v~~~~vd~~~~~~~~~~~~~i~~~Pt~~~~ 121 (149)
+..++ .+++...+ .+-++++|+++|||.|....+.++.++.--.+ +.+..||+..+ +.+.-+|-+...|||.=.
T Consensus 26 ~~~~~-eenw~~~l--~gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~n-pgLsGRF~vtaLptIYHv 101 (248)
T KOG0913|consen 26 LTRID-EENWKELL--TGEWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTN-PGLSGRFLVTALPTIYHV 101 (248)
T ss_pred eEEec-ccchhhhh--chHHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEec-cccceeeEEEecceEEEe
Confidence 66676 48999987 78899999999999999999999999988877 99999999999 999999999999999999
Q ss_pred eCCeeeeeeeCCCCHHHHHHHHHH
Q psy5679 122 RNGDPVDTVVGNADQDVIQTLVSK 145 (149)
Q Consensus 122 ~~g~~~~~~~g~~~~~~l~~~i~~ 145 (149)
++|.. .+|.|..+..++.++++.
T Consensus 102 kDGeF-rrysgaRdk~dfisf~~~ 124 (248)
T KOG0913|consen 102 KDGEF-RRYSGARDKNDFISFEEH 124 (248)
T ss_pred ecccc-ccccCcccchhHHHHHHh
Confidence 99988 689999999999988864
No 117
>KOG3414|consensus
Probab=99.17 E-value=9.2e-10 Score=68.64 Aligned_cols=102 Identities=15% Similarity=0.229 Sum_probs=85.6
Q ss_pred EEEecchhhHHHHH--cCCCCEEEEEeCCCChhHHhhhHHHHHHHhhcCC-ceEEEEEecCCchhhhHhcCCCcccEEEE
Q psy5679 44 YLIIEKIDDFKQTI--RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENGGGEIAREFEVQAVPTVIG 120 (149)
Q Consensus 44 v~~i~~~~~~~~~~--~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~~~~~~~~~~i~~~Pt~~~ 120 (149)
+.++.+.+++++++ ...+.++|-|+..|.|.|.++...|.++++...+ ..++-+|+++- +++.+-|++...|++++
T Consensus 5 Lp~L~s~~~VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV-~~~~~~~~l~~p~tvmf 83 (142)
T KOG3414|consen 5 LPTLHSGWEVDQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEV-PDFVKMYELYDPPTVMF 83 (142)
T ss_pred ccccccHHHHHHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchh-hhhhhhhcccCCceEEE
Confidence 45567778999998 7899999999999999999999999999999998 88999999999 99999999999999999
Q ss_pred EeCCeeee---------eeeCC-CCHHHHHHHHHHH
Q psy5679 121 FRNGDPVD---------TVVGN-ADQDVIQTLVSKL 146 (149)
Q Consensus 121 ~~~g~~~~---------~~~g~-~~~~~l~~~i~~~ 146 (149)
|-+++-+. ++.+. .+.+++.+.++.+
T Consensus 84 Ffn~kHmkiD~gtgdn~Kin~~~~~kq~~Idiie~i 119 (142)
T KOG3414|consen 84 FFNNKHMKIDLGTGDNNKINFAFEDKQEFIDIIETI 119 (142)
T ss_pred EEcCceEEEeeCCCCCceEEEEeccHHHHHHHHHHH
Confidence 97666442 22222 4667777777654
No 118
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=99.17 E-value=2.6e-10 Score=73.18 Aligned_cols=85 Identities=18% Similarity=0.316 Sum_probs=55.2
Q ss_pred cCCCCEEEEEeCCCChhHHhhhHHHHHHHhhcCCceEEEEEecCCchhhhHhc---CCCcccEEEEE-eCCeeeeeeeCC
Q psy5679 58 RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREF---EVQAVPTVIGF-RNGDPVDTVVGN 133 (149)
Q Consensus 58 ~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~---~i~~~Pt~~~~-~~g~~~~~~~g~ 133 (149)
-.++..++.|..+||+.|....|.+.++++..+++.+-.+..|.+ .++..+| |..++|+++++ ++|+.+.++..
T Consensus 39 ~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~~-~el~~~~lt~g~~~IP~~I~~d~~~~~lg~wge- 116 (129)
T PF14595_consen 39 IQKPYNILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRDEN-KELMDQYLTNGGRSIPTFIFLDKDGKELGRWGE- 116 (129)
T ss_dssp --S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHH-HHHTTTTTT-SS--SSEEEEE-TT--EEEEEES-
T ss_pred cCCCcEEEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEecCC-hhHHHHHHhCCCeecCEEEEEcCCCCEeEEEcC-
Confidence 356668888999999999999999999999998877777777877 6666554 67899999999 56888877764
Q ss_pred CCHHHHHHHHHH
Q psy5679 134 ADQDVIQTLVSK 145 (149)
Q Consensus 134 ~~~~~l~~~i~~ 145 (149)
.+..+.+++.+
T Consensus 117 -rP~~~~~~~~~ 127 (129)
T PF14595_consen 117 -RPKEVQELVDE 127 (129)
T ss_dssp -S-HHHH-----
T ss_pred -CCHHHhhcccc
Confidence 56666666544
No 119
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=99.15 E-value=4.3e-10 Score=74.33 Aligned_cols=89 Identities=16% Similarity=0.181 Sum_probs=67.3
Q ss_pred CCCCEEEEEeCCCChhHHhhhHHHHHHHhhcCC--ceEEEEEec--------CC--chhhhH------------------
Q psy5679 59 GRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG--VEFVKINVE--------NG--GGEIAR------------------ 108 (149)
Q Consensus 59 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~--v~~~~vd~~--------~~--~~~~~~------------------ 108 (149)
++++++|.||++||++|....|.+.++.+++++ +.++.++++ .. -..+++
T Consensus 21 ~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~~f~~~~~~~~fp~~~d~~~~~~ 100 (153)
T TIGR02540 21 RGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIESFARRNYGVTFPMFSKIKILGS 100 (153)
T ss_pred CCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHHHHHHHhcCCCCCccceEecCCC
Confidence 578899999999999999999999999999975 888888851 11 011221
Q ss_pred ------hcCC---CcccE-----EEEEeCCeeeeeeeCCCCHHHHHHHHHHHh
Q psy5679 109 ------EFEV---QAVPT-----VIGFRNGDPVDTVVGNADQDVIQTLVSKLS 147 (149)
Q Consensus 109 ------~~~i---~~~Pt-----~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~ 147 (149)
.|.+ ...|+ +++-++|+.+..+.|..+.+++...|++++
T Consensus 101 ~~~~~~~~~~~~~~~~p~~~~~tflID~~G~v~~~~~g~~~~~~l~~~i~~l~ 153 (153)
T TIGR02540 101 EAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPEEPVEEIRPEITALV 153 (153)
T ss_pred CCCcHHHHHHhcCCCCCCCccEEEEEcCCCcEEEEECCCCCHHHHHHHHHHhC
Confidence 1211 24674 555589999999999999999999888754
No 120
>PF13728 TraF: F plasmid transfer operon protein
Probab=99.15 E-value=7.4e-10 Score=77.03 Aligned_cols=84 Identities=15% Similarity=0.371 Sum_probs=70.6
Q ss_pred CCCCEEEEEeCCCChhHHhhhHHHHHHHhhcCCceEEEEEecCC----------chhhhHhcCCCcccEEEEE-eCC-ee
Q psy5679 59 GRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENG----------GGEIAREFEVQAVPTVIGF-RNG-DP 126 (149)
Q Consensus 59 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~----------~~~~~~~~~i~~~Pt~~~~-~~g-~~ 126 (149)
.++.-+++||.+.|+.|+.+.|++..++++| ++.++.|++|.. +..++++++|..+|+++++ .++ +.
T Consensus 119 a~~~gL~~F~~~~C~~C~~~~pil~~~~~~y-g~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~~~~~ 197 (215)
T PF13728_consen 119 AQKYGLFFFYRSDCPYCQQQAPILQQFADKY-GFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPNTKKW 197 (215)
T ss_pred hhCeEEEEEEcCCCchhHHHHHHHHHHHHHh-CCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECCCCeE
Confidence 5888899999999999999999999999999 577788887721 2678999999999999999 344 56
Q ss_pred eeeeeCCCCHHHHHHHH
Q psy5679 127 VDTVVGNADQDVIQTLV 143 (149)
Q Consensus 127 ~~~~~g~~~~~~l~~~i 143 (149)
...-.|..+.++|.+-|
T Consensus 198 ~pv~~G~~s~~~L~~ri 214 (215)
T PF13728_consen 198 YPVSQGFMSLDELEDRI 214 (215)
T ss_pred EEEeeecCCHHHHHHhh
Confidence 56777889999998754
No 121
>PTZ00256 glutathione peroxidase; Provisional
Probab=99.15 E-value=6.9e-10 Score=75.50 Aligned_cols=90 Identities=11% Similarity=0.161 Sum_probs=66.6
Q ss_pred CCCCE-EEEEeCCCChhHHhhhHHHHHHHhhcCC--ceEEEEEecC----C--c-h---hh-hHh---------------
Q psy5679 59 GRNPV-LAYFFKPSCGFCKQLEPKISTVSETTSG--VEFVKINVEN----G--G-G---EI-ARE--------------- 109 (149)
Q Consensus 59 ~~~~~-vv~f~~~~C~~C~~~~~~l~~~~~~~~~--v~~~~vd~~~----~--~-~---~~-~~~--------------- 109 (149)
+++++ ++.+|++||++|....|.|.++.+++++ +.++.|+++. . + . .. .++
T Consensus 39 ~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~~~~~~~~f~~~~~~~~fpv~~d~d~~g 118 (183)
T PTZ00256 39 KGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPWDEPEIKEYVQKKFNVDFPLFQKIEVNG 118 (183)
T ss_pred CCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCCCceEEecCC
Confidence 46655 4566999999999999999999999875 8888887531 0 0 0 00 111
Q ss_pred ---------------------cCCCcccE----EEEEeCCeeeeeeeCCCCHHHHHHHHHHHhc
Q psy5679 110 ---------------------FEVQAVPT----VIGFRNGDPVDTVVGNADQDVIQTLVSKLSQ 148 (149)
Q Consensus 110 ---------------------~~i~~~Pt----~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~~ 148 (149)
+++.++|+ +++-++|+.+.++.|..+.+.+.+.|+++++
T Consensus 119 ~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~~g~~~~~~l~~~I~~ll~ 182 (183)
T PTZ00256 119 ENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYFSPKVNPNEMIQDIEKLLN 182 (183)
T ss_pred CCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEECCCCCHHHHHHHHHHHhc
Confidence 13457784 5555899999999998999999999988765
No 122
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=99.13 E-value=2.5e-10 Score=75.35 Aligned_cols=83 Identities=13% Similarity=0.202 Sum_probs=61.7
Q ss_pred CCCCEEEEEeCCCChhHHhhhHHHHHHHhhcCC--ceEEEEEecC--------C--chhhhH------------------
Q psy5679 59 GRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG--VEFVKINVEN--------G--GGEIAR------------------ 108 (149)
Q Consensus 59 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~--v~~~~vd~~~--------~--~~~~~~------------------ 108 (149)
++++++|.||++||+ |....|.|.++.+++.+ +.++.|+++. . -..+.+
T Consensus 21 ~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~f~~~~~~~~fp~~~d~d~~~~ 99 (152)
T cd00340 21 KGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEEIKEFCETNYGVTFPMFAKIDVNGE 99 (152)
T ss_pred CCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHHHHHHHHHhcCCCceeeeeEeccCC
Confidence 578999999999999 99999999999999975 8888886532 1 011221
Q ss_pred ----hcC--CCccc-----------EEEEE-eCCeeeeeeeCCCCHHHHHHH
Q psy5679 109 ----EFE--VQAVP-----------TVIGF-RNGDPVDTVVGNADQDVIQTL 142 (149)
Q Consensus 109 ----~~~--i~~~P-----------t~~~~-~~g~~~~~~~g~~~~~~l~~~ 142 (149)
.|+ +..+| +.+++ ++|+.+.++.|..+.+++...
T Consensus 100 ~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~~~G~~~~~~l~~~ 151 (152)
T cd00340 100 NAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKRFAPTTDPEELEKD 151 (152)
T ss_pred CCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEEECCCCCHHHHHhc
Confidence 222 23466 44555 899999999999888887654
No 123
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=99.10 E-value=1e-09 Score=69.07 Aligned_cols=78 Identities=18% Similarity=0.463 Sum_probs=54.1
Q ss_pred cchhhHHHHH----cCCCCEEEEEeC-------CCChhHHhhhHHHHHHHhhcCC-ceEEEEEecCC------chhhhH-
Q psy5679 48 EKIDDFKQTI----RGRNPVLAYFFK-------PSCGFCKQLEPKISTVSETTSG-VEFVKINVENG------GGEIAR- 108 (149)
Q Consensus 48 ~~~~~~~~~~----~~~~~~vv~f~~-------~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~------~~~~~~- 108 (149)
.+.++|.+.+ .++++++|+|++ +|||.|+...|.+++.....++ ..++.|.+..- +..+..
T Consensus 3 ~gy~~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~ 82 (119)
T PF06110_consen 3 RGYDEFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTD 82 (119)
T ss_dssp ECHHHHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH-
T ss_pred cCHHHHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEc
Confidence 3456777777 466899999985 6999999999999998888765 88888887422 124444
Q ss_pred -hcCCCcccEEEEEeCCe
Q psy5679 109 -EFEVQAVPTVIGFRNGD 125 (149)
Q Consensus 109 -~~~i~~~Pt~~~~~~g~ 125 (149)
++.++++||++-+..++
T Consensus 83 p~~~l~~IPTLi~~~~~~ 100 (119)
T PF06110_consen 83 PDLKLKGIPTLIRWETGE 100 (119)
T ss_dssp -CC---SSSEEEECTSS-
T ss_pred ceeeeeecceEEEECCCC
Confidence 58999999999996663
No 124
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=99.08 E-value=2.3e-09 Score=63.98 Aligned_cols=78 Identities=15% Similarity=0.409 Sum_probs=61.2
Q ss_pred EEEEEeCCCChhHHhhhHHHHHHHhhcCCceEEEEEecCCc---hhhhHhcC--CCcccEEEEEeCCeeeeeeeCCCCHH
Q psy5679 63 VLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGG---GEIAREFE--VQAVPTVIGFRNGDPVDTVVGNADQD 137 (149)
Q Consensus 63 ~vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~---~~~~~~~~--i~~~Pt~~~~~~g~~~~~~~g~~~~~ 137 (149)
.+++|+.+||++|.+....|+++...+.++.+..+|++... .++.+..+ +..+|++++ +|+.+ | ..+
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi--~g~~i----g--g~~ 73 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFV--DQKHI----G--GCT 73 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEE--CCEEE----c--CHH
Confidence 47889999999999999999999988767888888887651 35555555 478999876 88764 2 567
Q ss_pred HHHHHHHHHhc
Q psy5679 138 VIQTLVSKLSQ 148 (149)
Q Consensus 138 ~l~~~i~~~~~ 148 (149)
++.++++..++
T Consensus 74 ~~~~~~~~~~~ 84 (85)
T PRK11200 74 DFEAYVKENLG 84 (85)
T ss_pred HHHHHHHHhcc
Confidence 88888887653
No 125
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=99.08 E-value=1e-09 Score=71.19 Aligned_cols=85 Identities=14% Similarity=0.243 Sum_probs=67.4
Q ss_pred CCCCEEEEEe-CCCChhHHhhhHHHHHHHhhcCC--ceEEEEEecCC--------------------chhhhHhcCCCcc
Q psy5679 59 GRNPVLAYFF-KPSCGFCKQLEPKISTVSETTSG--VEFVKINVENG--------------------GGEIAREFEVQAV 115 (149)
Q Consensus 59 ~~~~~vv~f~-~~~C~~C~~~~~~l~~~~~~~~~--v~~~~vd~~~~--------------------~~~~~~~~~i~~~ 115 (149)
++++++|.|| +.||+.|....+.+.++.+.+.+ +.++.|..+.. ...+.+.||+...
T Consensus 22 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~ 101 (140)
T cd03017 22 RGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVWGE 101 (140)
T ss_pred CCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCccc
Confidence 4889999999 58999999999999999888763 77777775433 1456778998888
Q ss_pred ---------cEEEEE-eCCeeeeeeeCCCCHHHHHHHH
Q psy5679 116 ---------PTVIGF-RNGDPVDTVVGNADQDVIQTLV 143 (149)
Q Consensus 116 ---------Pt~~~~-~~g~~~~~~~g~~~~~~l~~~i 143 (149)
|+++++ ++|+.+..+.|....+.+.+.+
T Consensus 102 ~~~~~~~~~p~~~lid~~G~v~~~~~g~~~~~~~~~~~ 139 (140)
T cd03017 102 KKKKYMGIERSTFLIDPDGKIVKVWRKVKPKGHAEEVL 139 (140)
T ss_pred cccccCCcceeEEEECCCCEEEEEEecCCccchHHHHh
Confidence 888888 6899999999977666666543
No 126
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=99.05 E-value=2.4e-09 Score=62.37 Aligned_cols=70 Identities=20% Similarity=0.413 Sum_probs=51.0
Q ss_pred EEEEeCCCChhHHhhhHHHHHHHhhcCCceEEEEEecCCchhhhHh-----cCCCcccEEEEEeCCeeeeeeeCCCCHHH
Q psy5679 64 LAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIARE-----FEVQAVPTVIGFRNGDPVDTVVGNADQDV 138 (149)
Q Consensus 64 vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~-----~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~ 138 (149)
+++||++||++|+.+.+.|+++. +.+..+|+++. +..... +++.++|++ ++.+|+.+. ..+..+
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~-----~~~~~idi~~~-~~~~~~~~~~~~~~~~vP~i-~~~~g~~l~----~~~~~~ 70 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLG-----AAYEWVDIEED-EGAADRVVSVNNGNMTVPTV-KFADGSFLT----NPSAAQ 70 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcC-----CceEEEeCcCC-HhHHHHHHHHhCCCceeCEE-EECCCeEec----CCCHHH
Confidence 67899999999999999887763 44556788777 555555 389999998 466775432 256667
Q ss_pred HHHHHH
Q psy5679 139 IQTLVS 144 (149)
Q Consensus 139 l~~~i~ 144 (149)
+.+.|+
T Consensus 71 ~~~~l~ 76 (77)
T TIGR02200 71 VKAKLQ 76 (77)
T ss_pred HHHHhh
Confidence 766654
No 127
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=99.03 E-value=2e-09 Score=71.17 Aligned_cols=79 Identities=16% Similarity=0.306 Sum_probs=56.1
Q ss_pred hhhHHHHHcCCCCEEEEEeCCCChhHHhhhHH-H--HHHHhhcCC-ceEEEEEecCCchhhhHhc--------CCCcccE
Q psy5679 50 IDDFKQTIRGRNPVLAYFFKPSCGFCKQLEPK-I--STVSETTSG-VEFVKINVENGGGEIAREF--------EVQAVPT 117 (149)
Q Consensus 50 ~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~-l--~~~~~~~~~-v~~~~vd~~~~~~~~~~~~--------~i~~~Pt 117 (149)
.+.++.+-.++|+++|.++.+||++|+.+... + .++++.... +.-+++|.++. +++...| |..++|+
T Consensus 27 ~ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~-Pdid~~y~~~~~~~~~~gGwPl 105 (163)
T PF03190_consen 27 EEALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREER-PDIDKIYMNAVQAMSGSGGWPL 105 (163)
T ss_dssp HHHHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT--HHHHHHHHHHHHHHHS---SSE
T ss_pred HHHHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccC-ccHHHHHHHHHHHhcCCCCCCc
Confidence 47788887899999999999999999999863 3 456665543 77788999999 9998888 7899999
Q ss_pred EEEE-eCCeeeee
Q psy5679 118 VIGF-RNGDPVDT 129 (149)
Q Consensus 118 ~~~~-~~g~~~~~ 129 (149)
.++. .+|+++..
T Consensus 106 ~vfltPdg~p~~~ 118 (163)
T PF03190_consen 106 TVFLTPDGKPFFG 118 (163)
T ss_dssp EEEE-TTS-EEEE
T ss_pred eEEECCCCCeeee
Confidence 9988 88988753
No 128
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=99.00 E-value=4.3e-09 Score=62.33 Aligned_cols=61 Identities=20% Similarity=0.405 Sum_probs=46.4
Q ss_pred EEEEeCCCChhHHhhhHHHHHHHhhcCCceEEEEEecCCch----hhhHhcCCCcccEEEEEeCCeee
Q psy5679 64 LAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGG----EIAREFEVQAVPTVIGFRNGDPV 127 (149)
Q Consensus 64 vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~----~~~~~~~i~~~Pt~~~~~~g~~~ 127 (149)
++.|+++||++|..+.+.++++.-. +.+.++.+|.+.... .+.+.+++.++|++++ +|+.+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~-~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i--~g~~i 65 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVK-PAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFI--NGKFI 65 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCC-CCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEE--CCEEE
Confidence 5789999999999999999998722 126777777765511 2666779999999965 88654
No 129
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=98.99 E-value=1e-08 Score=72.80 Aligned_cols=88 Identities=14% Similarity=0.251 Sum_probs=73.2
Q ss_pred CCCCEEEEEeCCCChhHHhhhHHHHHHHhhcCCceEEEEEecCC----------chhhhHhcCCCcccEEEEE-eC-Cee
Q psy5679 59 GRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENG----------GGEIAREFEVQAVPTVIGF-RN-GDP 126 (149)
Q Consensus 59 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~----------~~~~~~~~~i~~~Pt~~~~-~~-g~~ 126 (149)
.++.-+++||...|++|+.+.|.++.++++|. +.++.|++|.. +...++++|+..+|+++++ ++ ++.
T Consensus 149 a~~~gL~fFy~~~C~~C~~~apil~~fa~~yg-i~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~t~~~ 227 (256)
T TIGR02739 149 SQSYGLFFFYRGKSPISQKMAPVIQAFAKEYG-ISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPKSQKM 227 (256)
T ss_pred HhceeEEEEECCCCchhHHHHHHHHHHHHHhC-CeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECCCCcE
Confidence 46688999999999999999999999999995 77777777744 1347889999999999988 34 555
Q ss_pred eeeeeCCCCHHHHHHHHHHHh
Q psy5679 127 VDTVVGNADQDVIQTLVSKLS 147 (149)
Q Consensus 127 ~~~~~g~~~~~~l~~~i~~~~ 147 (149)
...-.|.++.++|.+-|..++
T Consensus 228 ~pv~~G~iS~deL~~Ri~~v~ 248 (256)
T TIGR02739 228 SPLAYGFISQDELKERILNVL 248 (256)
T ss_pred EEEeeccCCHHHHHHHHHHHH
Confidence 557778899999999887765
No 130
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=98.98 E-value=5.4e-08 Score=61.54 Aligned_cols=100 Identities=13% Similarity=0.182 Sum_probs=78.4
Q ss_pred EEecchhhHHHHH--cCCCCEEEEEeCCCChhHHhhhHHHHHHHhhcCC-ceEEEEEecCCchhhhHhcCCCccc-EEEE
Q psy5679 45 LIIEKIDDFKQTI--RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENGGGEIAREFEVQAVP-TVIG 120 (149)
Q Consensus 45 ~~i~~~~~~~~~~--~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~~~~~~~~~~i~~~P-t~~~ 120 (149)
.++.+..++++++ ..++.++|-|+.+|.+.|.++...|.+++++.++ ..++.||.++- +++.+.|++. -| |+++
T Consensus 3 ~~L~s~~~VDqAI~~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~V-pdfn~~yel~-dP~tvmF 80 (133)
T PF02966_consen 3 PHLHSGWHVDQAILSEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDEV-PDFNQMYELY-DPCTVMF 80 (133)
T ss_dssp EEE-SHHHHHHHHHH-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTT-HCCHHHTTS--SSEEEEE
T ss_pred cccCccchHHHHHhccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEcccc-hhhhcccccC-CCeEEEE
Confidence 4567778999998 7899999999999999999999999999999988 88999999999 9999999999 66 4666
Q ss_pred EeCCeeee---------eeeCC-CCHHHHHHHHHHH
Q psy5679 121 FRNGDPVD---------TVVGN-ADQDVIQTLVSKL 146 (149)
Q Consensus 121 ~~~g~~~~---------~~~g~-~~~~~l~~~i~~~ 146 (149)
|-+++.+. +..+. .+.+++.+.|+.+
T Consensus 81 F~rnkhm~vD~GtgnnnKin~~~~~kqe~iDiie~i 116 (133)
T PF02966_consen 81 FFRNKHMMVDFGTGNNNKINWAFEDKQEFIDIIETI 116 (133)
T ss_dssp EETTEEEEEESSSSSSSSBCS--SCHHHHHHHHHHH
T ss_pred EecCeEEEEEecCCCccEEEEEcCcHHHHHHHHHHH
Confidence 65666543 22232 4578888877764
No 131
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.97 E-value=4.8e-09 Score=57.95 Aligned_cols=60 Identities=30% Similarity=0.722 Sum_probs=50.6
Q ss_pred EEEEeCCCChhHHhhhHHHHHHHhhcCCceEEEEEecCCchhhhH---hcCCCcccEEEEEeCC
Q psy5679 64 LAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAR---EFEVQAVPTVIGFRNG 124 (149)
Q Consensus 64 vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~---~~~i~~~Pt~~~~~~g 124 (149)
+++||++||+.|..+.+.+.++....+++.+..++++.. ..... .+++..+|+++++.+|
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDED-PALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCC-hHHhhHHHhCCCccccEEEEEeCC
Confidence 478999999999999999999844444599999999988 65544 7899999999998766
No 132
>KOG2501|consensus
Probab=98.96 E-value=1.6e-09 Score=70.74 Aligned_cols=71 Identities=20% Similarity=0.379 Sum_probs=56.5
Q ss_pred cCCCCEEEEEeCCCChhHHhhhHHHHHHHhhcCC----ceEEEEEecCC------------------------chhhhHh
Q psy5679 58 RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG----VEFVKINVENG------------------------GGEIARE 109 (149)
Q Consensus 58 ~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~----v~~~~vd~~~~------------------------~~~~~~~ 109 (149)
-.++.+.++|.+.||++|+.+-|.+.++.++..+ +.++-|+.|.. -.+++++
T Consensus 31 l~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~k 110 (157)
T KOG2501|consen 31 LQGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEK 110 (157)
T ss_pred hCCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHh
Confidence 3679999999999999999999999877666543 67777776644 1467789
Q ss_pred cCCCcccEEEEE-eCCeeee
Q psy5679 110 FEVQAVPTVIGF-RNGDPVD 128 (149)
Q Consensus 110 ~~i~~~Pt~~~~-~~g~~~~ 128 (149)
|++.++|++++. .+|..+.
T Consensus 111 y~v~~iP~l~i~~~dG~~v~ 130 (157)
T KOG2501|consen 111 YEVKGIPALVILKPDGTVVT 130 (157)
T ss_pred cccCcCceeEEecCCCCEeh
Confidence 999999999988 6787653
No 133
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.96 E-value=9.4e-09 Score=80.89 Aligned_cols=87 Identities=17% Similarity=0.326 Sum_probs=73.6
Q ss_pred hHHHHHcCCCCE-EEEEeCCCChhHHhhhHHHHHHHhhcCCceEEEEEecCCchhhhHhcCCCcccEEEEEeCCeeeeee
Q psy5679 52 DFKQTIRGRNPV-LAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTVIGFRNGDPVDTV 130 (149)
Q Consensus 52 ~~~~~~~~~~~~-vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~ 130 (149)
..+++..-++++ +-.|.+++|++|.+....+++++..++++..-.+|.... ++++++|+|.++|++++ ||+.. +
T Consensus 467 ~~~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~-~~~~~~~~v~~vP~~~i--~~~~~--~ 541 (555)
T TIGR03143 467 LLEKIKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSHF-PDLKDEYGIMSVPAIVV--DDQQV--Y 541 (555)
T ss_pred HHHHHHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECccc-HHHHHhCCceecCEEEE--CCEEE--E
Confidence 333333445665 556689999999999999999999999999999999999 99999999999999999 88764 5
Q ss_pred eCCCCHHHHHHHH
Q psy5679 131 VGNADQDVIQTLV 143 (149)
Q Consensus 131 ~g~~~~~~l~~~i 143 (149)
.|..+.+++.+||
T Consensus 542 ~G~~~~~~~~~~~ 554 (555)
T TIGR03143 542 FGKKTIEEMLELI 554 (555)
T ss_pred eeCCCHHHHHHhh
Confidence 6878999998886
No 134
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=98.95 E-value=1.2e-08 Score=68.42 Aligned_cols=73 Identities=12% Similarity=0.175 Sum_probs=59.0
Q ss_pred CCCCEEEEEeCCC-ChhHHhhhHHHHHHHhhcCCceEEEEEecCC----------------------chhhhHhcCCCcc
Q psy5679 59 GRNPVLAYFFKPS-CGFCKQLEPKISTVSETTSGVEFVKINVENG----------------------GGEIAREFEVQAV 115 (149)
Q Consensus 59 ~~~~~vv~f~~~~-C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~----------------------~~~~~~~~~i~~~ 115 (149)
.++.++|.||+.| |+.|....+.+.++.+++.++.++.|+.|.. +..+++.||+...
T Consensus 43 ~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~~~~vv~vs~D~~~~~~~f~~~~~~~~~~~lsD~~~~~~~~~~gv~~~ 122 (167)
T PRK00522 43 AGKRKVLNIFPSIDTGVCATSVRKFNQEAAELDNTVVLCISADLPFAQKRFCGAEGLENVITLSDFRDHSFGKAYGVAIA 122 (167)
T ss_pred CCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcCCcEEEEEeCCCHHHHHHHHHhCCCCCceEeecCCccHHHHHhCCeec
Confidence 5789999999999 9999999999999999986688888876532 1256778998877
Q ss_pred c---------EEEEE-eCCeeeeeee
Q psy5679 116 P---------TVIGF-RNGDPVDTVV 131 (149)
Q Consensus 116 P---------t~~~~-~~g~~~~~~~ 131 (149)
| +.+++ ++|+.+..+.
T Consensus 123 ~~~~~g~~~r~tfvId~~G~I~~~~~ 148 (167)
T PRK00522 123 EGPLKGLLARAVFVLDENNKVVYSEL 148 (167)
T ss_pred ccccCCceeeEEEEECCCCeEEEEEE
Confidence 7 76666 6899887664
No 135
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=98.95 E-value=1.8e-08 Score=62.09 Aligned_cols=93 Identities=13% Similarity=0.209 Sum_probs=74.6
Q ss_pred EEEecchhhHHHHHcCCCCEEEEEeCCC--ChhHHhhhHHHHHHHhhcCC-ceEEEEEecCCchhhhHhcCCCcccEEEE
Q psy5679 44 YLIIEKIDDFKQTIRGRNPVLAYFFKPS--CGFCKQLEPKISTVSETTSG-VEFVKINVENGGGEIAREFEVQAVPTVIG 120 (149)
Q Consensus 44 v~~i~~~~~~~~~~~~~~~~vv~f~~~~--C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~~~~~~~~~~i~~~Pt~~~ 120 (149)
+..++ .+++++.+...+..+++|.++. ++.+.++.=++.|+.+.+++ +..+.++-+.+ ..+..+||+..+|++++
T Consensus 11 ~~~vd-~~~ld~~l~~~~~~vlf~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~~~~e-~~L~~r~gv~~~PaLvf 88 (107)
T PF07449_consen 11 WPRVD-ADTLDAFLAAPGDAVLFFAGDPARFPETADVAVILPELVKAFPGRFRGAVVARAAE-RALAARFGVRRWPALVF 88 (107)
T ss_dssp EEEE--CCCHHHHHHCCSCEEEEESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHHHH-HHHHHHHT-TSSSEEEE
T ss_pred Ceeec-hhhHHHHHhCCCcEEEEECCCCCcCcccccceeEcHHHHHhhhCccceEEECchhH-HHHHHHhCCccCCeEEE
Confidence 45555 3788888877777777776643 57778888899999999998 77777886666 89999999999999999
Q ss_pred EeCCeeeeeeeCCCCHHH
Q psy5679 121 FRNGDPVDTVVGNADQDV 138 (149)
Q Consensus 121 ~~~g~~~~~~~g~~~~~~ 138 (149)
+++|+.+....|..+.++
T Consensus 89 ~R~g~~lG~i~gi~dW~d 106 (107)
T PF07449_consen 89 FRDGRYLGAIEGIRDWAD 106 (107)
T ss_dssp EETTEEEEEEESSSTHHH
T ss_pred EECCEEEEEecCeecccc
Confidence 999999999999777655
No 136
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=98.94 E-value=4.6e-09 Score=66.60 Aligned_cols=70 Identities=24% Similarity=0.559 Sum_probs=58.2
Q ss_pred CCCCEEEEEeCC-CChhHHhhhHHHHHHHhhcCC--ceEEEEEecCC--------------------chhhhHhcCCC--
Q psy5679 59 GRNPVLAYFFKP-SCGFCKQLEPKISTVSETTSG--VEFVKINVENG--------------------GGEIAREFEVQ-- 113 (149)
Q Consensus 59 ~~~~~vv~f~~~-~C~~C~~~~~~l~~~~~~~~~--v~~~~vd~~~~--------------------~~~~~~~~~i~-- 113 (149)
.+++++|.||+. ||+.|....+.+.++..++++ +.++.|..+.. +..+.+.|++.
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 103 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKAFGIEDE 103 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHHTTCEET
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhhccccccccCcchHHHHHcCCccc
Confidence 679999999999 999999999999999998874 88888886533 24677788888
Q ss_pred ----cccEEEEE-eCCeeee
Q psy5679 114 ----AVPTVIGF-RNGDPVD 128 (149)
Q Consensus 114 ----~~Pt~~~~-~~g~~~~ 128 (149)
.+|+++++ ++|+.++
T Consensus 104 ~~~~~~p~~~lid~~g~I~~ 123 (124)
T PF00578_consen 104 KDTLALPAVFLIDPDGKIRY 123 (124)
T ss_dssp TTSEESEEEEEEETTSBEEE
T ss_pred cCCceEeEEEEECCCCEEEe
Confidence 89999888 6677653
No 137
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=98.93 E-value=2.4e-08 Score=70.52 Aligned_cols=88 Identities=17% Similarity=0.218 Sum_probs=71.7
Q ss_pred CCCCEEEEEeCCCChhHHhhhHHHHHHHhhcCCceEEEEEecCC----------chhhhHhcCCCcccEEEEE-e-CCee
Q psy5679 59 GRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENG----------GGEIAREFEVQAVPTVIGF-R-NGDP 126 (149)
Q Consensus 59 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~----------~~~~~~~~~i~~~Pt~~~~-~-~g~~ 126 (149)
.++.-+++||...|++|+.+.|+++.++++|. +.++.|++|.. +...++++++..+|+++++ + .++.
T Consensus 142 a~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg-~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~~~ 220 (248)
T PRK13703 142 AEHYGLMFFYRGQDPIDGQLAQVINDFRDTYG-LSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSGSV 220 (248)
T ss_pred HhcceEEEEECCCCchhHHHHHHHHHHHHHhC-CeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCCcE
Confidence 46688999999999999999999999999995 77777777642 1345678999999999998 3 3566
Q ss_pred eeeeeCCCCHHHHHHHHHHHh
Q psy5679 127 VDTVVGNADQDVIQTLVSKLS 147 (149)
Q Consensus 127 ~~~~~g~~~~~~l~~~i~~~~ 147 (149)
...-.|.++.++|.+-|..++
T Consensus 221 ~pv~~G~iS~deL~~Ri~~v~ 241 (248)
T PRK13703 221 RPLSYGFITQDDLAKRFLNVS 241 (248)
T ss_pred EEEeeccCCHHHHHHHHHHHH
Confidence 667778899999998887654
No 138
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=98.92 E-value=1.4e-08 Score=68.37 Aligned_cols=88 Identities=16% Similarity=0.169 Sum_probs=65.9
Q ss_pred CCCCEEEEEe-CCCChhHHhhhHHHHHHHhhcCC--ceEEEEEecCC---------------------------chhhhH
Q psy5679 59 GRNPVLAYFF-KPSCGFCKQLEPKISTVSETTSG--VEFVKINVENG---------------------------GGEIAR 108 (149)
Q Consensus 59 ~~~~~vv~f~-~~~C~~C~~~~~~l~~~~~~~~~--v~~~~vd~~~~---------------------------~~~~~~ 108 (149)
+++.++|+|| +.||+.|....+.|.++.+++.+ +.++.|..|.. ...+.+
T Consensus 28 ~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~ 107 (173)
T cd03015 28 KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKISR 107 (173)
T ss_pred CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhHHH
Confidence 4789999999 89999999999999999998864 77777775432 124556
Q ss_pred hcCCC------cccEEEEE-eCCeeeeeeeCC----CCHHHHHHHHHHH
Q psy5679 109 EFEVQ------AVPTVIGF-RNGDPVDTVVGN----ADQDVIQTLVSKL 146 (149)
Q Consensus 109 ~~~i~------~~Pt~~~~-~~g~~~~~~~g~----~~~~~l~~~i~~~ 146 (149)
.|++. ..|+.+++ ++|+....+.+. .+.+++...|+.+
T Consensus 108 ~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~~~ 156 (173)
T cd03015 108 DYGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDAL 156 (173)
T ss_pred HhCCccccCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 78876 56788777 689988877542 3566777777654
No 139
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=98.91 E-value=4.7e-08 Score=60.01 Aligned_cols=95 Identities=17% Similarity=0.261 Sum_probs=68.8
Q ss_pred EEecchhhHHHHH--cCCCCEEEEEeCCCChhHHhhhHHHHHHHhhcCC-ceEEEEEecCC---chhhhHhcCCC-cccE
Q psy5679 45 LIIEKIDDFKQTI--RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENG---GGEIAREFEVQ-AVPT 117 (149)
Q Consensus 45 ~~i~~~~~~~~~~--~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~---~~~~~~~~~i~-~~Pt 117 (149)
..+++.+++++++ +.+++++|+=-++.|+-+......|++.....++ +.++.+|+-+. ...++++|||. .-|.
T Consensus 2 ~~L~t~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ 81 (105)
T PF11009_consen 2 KPLTTEEQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHESPQ 81 (105)
T ss_dssp -E--SHHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----SSE
T ss_pred CccCCHHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCCCc
Confidence 4577889999999 5699999988999999999999999999999988 99999999766 24678899998 5999
Q ss_pred EEEEeCCeeeeeeeCC-CCHHHH
Q psy5679 118 VIGFRNGDPVDTVVGN-ADQDVI 139 (149)
Q Consensus 118 ~~~~~~g~~~~~~~g~-~~~~~l 139 (149)
+++++||+.++..+.. ++.+.|
T Consensus 82 ~ili~~g~~v~~aSH~~It~~~l 104 (105)
T PF11009_consen 82 VILIKNGKVVWHASHWDITAEAL 104 (105)
T ss_dssp EEEEETTEEEEEEEGGG-SHHHH
T ss_pred EEEEECCEEEEECccccCCHHhc
Confidence 9999999998755532 566554
No 140
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=98.91 E-value=1.3e-08 Score=66.39 Aligned_cols=85 Identities=9% Similarity=0.139 Sum_probs=64.0
Q ss_pred CCCCEEEEEeCCC-ChhHHhhhHHHHHHHhhcCCceEEEEEecCC---------------------c-hhhhHhcCCCc-
Q psy5679 59 GRNPVLAYFFKPS-CGFCKQLEPKISTVSETTSGVEFVKINVENG---------------------G-GEIAREFEVQA- 114 (149)
Q Consensus 59 ~~~~~vv~f~~~~-C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~---------------------~-~~~~~~~~i~~- 114 (149)
.++++++.||+.| |+.|....+.|.++.++++++.++.|+.+.. . ..+.+.||+..
T Consensus 25 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~~ 104 (143)
T cd03014 25 AGKVKVISVFPSIDTPVCATQTKRFNKEAAKLDNTVVLTISADLPFAQKRWCGAEGVDNVTTLSDFRDHSFGKAYGVLIK 104 (143)
T ss_pred CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcCCCEEEEEECCCHHHHHHHHHhcCCCCceEeecCcccHHHHHhCCeec
Confidence 5789999999998 6999999999999999998888888887522 1 34566777753
Q ss_pred -----ccEEEEE-eCCeeeeeeeCC--CCHHHHHHHH
Q psy5679 115 -----VPTVIGF-RNGDPVDTVVGN--ADQDVIQTLV 143 (149)
Q Consensus 115 -----~Pt~~~~-~~g~~~~~~~g~--~~~~~l~~~i 143 (149)
.|+.+++ ++|+.+....|. ....++.+.|
T Consensus 105 ~~~~~~~~~~iid~~G~I~~~~~~~~~~~~~~~~~~~ 141 (143)
T cd03014 105 DLGLLARAVFVIDENGKVIYVELVPEITDEPDYEAAL 141 (143)
T ss_pred cCCccceEEEEEcCCCeEEEEEECCCcccCCCHHHHh
Confidence 6787777 689998877753 2344454443
No 141
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=98.88 E-value=8.3e-08 Score=64.86 Aligned_cols=102 Identities=14% Similarity=0.315 Sum_probs=84.8
Q ss_pred eeEEEecchhhHHHHHcCCCC-EEEEEeCCCChhHHhhhHHHHHHHhhcCC-ceEEEEEecCCchhhhHhcCCC--cccE
Q psy5679 42 MAYLIIEKIDDFKQTIRGRNP-VLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENGGGEIAREFEVQ--AVPT 117 (149)
Q Consensus 42 ~~v~~i~~~~~~~~~~~~~~~-~vv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~~~~~~~~~~i~--~~Pt 117 (149)
..+.+++. +++..+...+.+ ++++|..........+...++++++.+++ +.|+.+|++.. +.+++.+|+. .+|+
T Consensus 77 P~v~~~t~-~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~~-~~~~~~~~i~~~~~P~ 154 (184)
T PF13848_consen 77 PLVPELTP-ENFEKLFSSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADDF-PRLLKYFGIDEDDLPA 154 (184)
T ss_dssp TSCEEEST-THHHHHHSTSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTTT-HHHHHHTTTTTSSSSE
T ss_pred ccccccch-hhHHHHhcCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHHh-HHHHHHcCCCCccCCE
Confidence 33777874 899999876665 88888877788899999999999999999 99999999988 8999999998 8999
Q ss_pred EEEEe--CCeeeeeeeCCCCHHHHHHHHHH
Q psy5679 118 VIGFR--NGDPVDTVVGNADQDVIQTLVSK 145 (149)
Q Consensus 118 ~~~~~--~g~~~~~~~g~~~~~~l~~~i~~ 145 (149)
++++. +++......|..+.+.|.+||+.
T Consensus 155 ~vi~~~~~~~~~~~~~~~~~~~~i~~Fl~d 184 (184)
T PF13848_consen 155 LVIFDSNKGKYYYLPEGEITPESIEKFLND 184 (184)
T ss_dssp EEEEETTTSEEEE--SSCGCHHHHHHHHHH
T ss_pred EEEEECCCCcEEcCCCCCCCHHHHHHHhcC
Confidence 99996 45543334788999999999874
No 142
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=98.88 E-value=2.6e-08 Score=59.52 Aligned_cols=75 Identities=19% Similarity=0.421 Sum_probs=57.4
Q ss_pred EEEEeCCCChhHHhhhHHHHHHHhhcCCceEEEEEecCCc---hhhhHhcCC--CcccEEEEEeCCeeeeeeeCCCCHHH
Q psy5679 64 LAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGG---GEIAREFEV--QAVPTVIGFRNGDPVDTVVGNADQDV 138 (149)
Q Consensus 64 vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~---~~~~~~~~i--~~~Pt~~~~~~g~~~~~~~g~~~~~~ 138 (149)
+++|+.+|||+|.+....|+++...++++.+..+|++..+ .++.+.++- ..+|++++ +|+.+ | ..++
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi--~g~~i----g--G~~d 73 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFV--DEKHV----G--GCTD 73 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEE--CCEEe----c--CHHH
Confidence 6789999999999999999999877767778888887531 356666664 79999966 77653 3 5577
Q ss_pred HHHHHHHH
Q psy5679 139 IQTLVSKL 146 (149)
Q Consensus 139 l~~~i~~~ 146 (149)
|.+++++.
T Consensus 74 l~~~~~~~ 81 (86)
T TIGR02183 74 FEQLVKEN 81 (86)
T ss_pred HHHHHHhc
Confidence 88777664
No 143
>KOG3425|consensus
Probab=98.88 E-value=3e-08 Score=61.46 Aligned_cols=75 Identities=23% Similarity=0.478 Sum_probs=59.6
Q ss_pred chhhHHHHH---cCCCCEEEEEeC--------CCChhHHhhhHHHHHHHhhcCC-ceEEEEEecCC------chhhhHhc
Q psy5679 49 KIDDFKQTI---RGRNPVLAYFFK--------PSCGFCKQLEPKISTVSETTSG-VEFVKINVENG------GGEIAREF 110 (149)
Q Consensus 49 ~~~~~~~~~---~~~~~~vv~f~~--------~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~------~~~~~~~~ 110 (149)
..++|++.+ .+++.++|+|++ +|||.|.+..|.+.+..+..+. +.|+.+++.+- ...+....
T Consensus 11 g~e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d~ 90 (128)
T KOG3425|consen 11 GYESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKDP 90 (128)
T ss_pred hHHHHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccCC
Confidence 457777777 466669999986 7999999999999999887776 99999998644 13455566
Q ss_pred CC-CcccEEEEEeC
Q psy5679 111 EV-QAVPTVIGFRN 123 (149)
Q Consensus 111 ~i-~~~Pt~~~~~~ 123 (149)
++ ..+||++-+++
T Consensus 91 ~~lt~vPTLlrw~~ 104 (128)
T KOG3425|consen 91 GILTAVPTLLRWKR 104 (128)
T ss_pred CceeecceeeEEcC
Confidence 66 89999999864
No 144
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=98.86 E-value=3.1e-08 Score=65.37 Aligned_cols=85 Identities=13% Similarity=0.145 Sum_probs=62.8
Q ss_pred CCCCEEEEEeCC-CChhHHhhhHHHHHHHhhcCC--ceEEEEEecCC--------------------chhhhHhcCCCcc
Q psy5679 59 GRNPVLAYFFKP-SCGFCKQLEPKISTVSETTSG--VEFVKINVENG--------------------GGEIAREFEVQAV 115 (149)
Q Consensus 59 ~~~~~vv~f~~~-~C~~C~~~~~~l~~~~~~~~~--v~~~~vd~~~~--------------------~~~~~~~~~i~~~ 115 (149)
++++++|.||+. ||+.|....+.+.++.+.+.+ +.++.|..+.. ...+.+.|++...
T Consensus 29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~ 108 (154)
T PRK09437 29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVAEQFGVWGE 108 (154)
T ss_pred CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCCeEEECCCchHHHHhCCCcc
Confidence 578999999976 788999999999988888754 88888876533 1356678887654
Q ss_pred ------------cEEEEE-eCCeeeeeeeCCCCHHHHHHHH
Q psy5679 116 ------------PTVIGF-RNGDPVDTVVGNADQDVIQTLV 143 (149)
Q Consensus 116 ------------Pt~~~~-~~g~~~~~~~g~~~~~~l~~~i 143 (149)
|+.+++ ++|+.+..+.|....+.+.+.+
T Consensus 109 ~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~~~~~~ 149 (154)
T PRK09437 109 KKFMGKTYDGIHRISFLIDADGKIEHVFDKFKTSNHHDVVL 149 (154)
T ss_pred cccccccccCcceEEEEECCCCEEEEEEcCCCcchhHHHHH
Confidence 555566 7999999999865555544433
No 145
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=98.83 E-value=4.5e-08 Score=66.80 Aligned_cols=87 Identities=13% Similarity=0.146 Sum_probs=64.3
Q ss_pred CCCCEEEEEe-CCCChhHHhhhHHHHHHHhhcCC--ceEEEEEecCC------------------------chhhhHhcC
Q psy5679 59 GRNPVLAYFF-KPSCGFCKQLEPKISTVSETTSG--VEFVKINVENG------------------------GGEIAREFE 111 (149)
Q Consensus 59 ~~~~~vv~f~-~~~C~~C~~~~~~l~~~~~~~~~--v~~~~vd~~~~------------------------~~~~~~~~~ 111 (149)
.+++++|.|| +.||+.|....+.|.++.+++.+ +.++.|..|.. ...+++.||
T Consensus 30 ~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~g 109 (187)
T TIGR03137 30 KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNFG 109 (187)
T ss_pred CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHHhC
Confidence 5789999999 99999999999999999888753 77777775531 135667888
Q ss_pred CC------cccEEEEE-eCCeeeeeeeCC----CCHHHHHHHHHH
Q psy5679 112 VQ------AVPTVIGF-RNGDPVDTVVGN----ADQDVIQTLVSK 145 (149)
Q Consensus 112 i~------~~Pt~~~~-~~g~~~~~~~g~----~~~~~l~~~i~~ 145 (149)
+. ..|+.+++ ++|+....+.+. .+.+++...|+.
T Consensus 110 v~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~l~~ 154 (187)
T TIGR03137 110 VLIEEAGLADRGTFVIDPEGVIQAVEITDNGIGRDASELLRKIKA 154 (187)
T ss_pred CcccCCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHH
Confidence 86 45877777 789988765431 356666666643
No 146
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.83 E-value=5.5e-08 Score=75.98 Aligned_cols=81 Identities=16% Similarity=0.206 Sum_probs=71.0
Q ss_pred CCC-EEEEEeCCCChhHHhhhHHHHHHHhhcCCceEEEEEecCCchhhhHhcCCCcccEEEEEeCCeeeeeeeCCCCHHH
Q psy5679 60 RNP-VLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTVIGFRNGDPVDTVVGNADQDV 138 (149)
Q Consensus 60 ~~~-~vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~ 138 (149)
+++ .+..|++++||+|......+++++..++++.+-.+|..++ ++++++|++.++|++++ ||+. .+.|..+.++
T Consensus 115 ~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~~-~~~~~~~~v~~VP~~~i--~~~~--~~~g~~~~~~ 189 (517)
T PRK15317 115 DGDFHFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDGALF-QDEVEARNIMAVPTVFL--NGEE--FGQGRMTLEE 189 (517)
T ss_pred CCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEchhC-HhHHHhcCCcccCEEEE--CCcE--EEecCCCHHH
Confidence 444 4889999999999999999999999999999999999999 99999999999999977 7764 4668788888
Q ss_pred HHHHHHH
Q psy5679 139 IQTLVSK 145 (149)
Q Consensus 139 l~~~i~~ 145 (149)
+.+.+.+
T Consensus 190 ~~~~~~~ 196 (517)
T PRK15317 190 ILAKLDT 196 (517)
T ss_pred HHHHHhc
Confidence 8887764
No 147
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=98.82 E-value=4e-08 Score=64.20 Aligned_cols=43 Identities=28% Similarity=0.522 Sum_probs=34.2
Q ss_pred CCCEEEEE-eCCCChhHHhhhHHHHHHHhhcC--CceEEEEEecCC
Q psy5679 60 RNPVLAYF-FKPSCGFCKQLEPKISTVSETTS--GVEFVKINVENG 102 (149)
Q Consensus 60 ~~~~vv~f-~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~~ 102 (149)
+++++|.| ++.||+.|+...+.|.++.+++. ++.++.|..+..
T Consensus 23 ~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~ 68 (149)
T cd02970 23 EGPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESP 68 (149)
T ss_pred CCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCH
Confidence 45555555 59999999999999999999985 388888886544
No 148
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=98.79 E-value=7e-08 Score=67.99 Aligned_cols=82 Identities=18% Similarity=0.447 Sum_probs=61.9
Q ss_pred cCCCCEEEEEeCCCChhHHhhhHHHHHHHhhcCCceEEEEEe--------------------------------------
Q psy5679 58 RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINV-------------------------------------- 99 (149)
Q Consensus 58 ~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~-------------------------------------- 99 (149)
...+.+++.|..+.||+|+++.+.+.++.+. ++++..+..
T Consensus 105 ~~~k~~I~vFtDp~CpyCkkl~~~l~~~~~~--~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~ 182 (232)
T PRK10877 105 PQEKHVITVFTDITCGYCHKLHEQMKDYNAL--GITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPA 182 (232)
T ss_pred CCCCEEEEEEECCCChHHHHHHHHHHHHhcC--CeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCcc
Confidence 3467789999999999999999999887542 233333221
Q ss_pred ------cCCchhhhHhcCCCcccEEEEEeCCeeeeeeeCCCCHHHHHHHHHHH
Q psy5679 100 ------ENGGGEIAREFEVQAVPTVIGFRNGDPVDTVVGNADQDVIQTLVSKL 146 (149)
Q Consensus 100 ------~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~ 146 (149)
++ ...+++++||+++|+++ +.||+.+ .|..+.++|.++|++.
T Consensus 183 ~c~~~v~~-~~~la~~lgi~gTPtiv-~~~G~~~---~G~~~~~~L~~~l~~~ 230 (232)
T PRK10877 183 SCDVDIAD-HYALGVQFGVQGTPAIV-LSNGTLV---PGYQGPKEMKAFLDEH 230 (232)
T ss_pred cccchHHH-hHHHHHHcCCccccEEE-EcCCeEe---eCCCCHHHHHHHHHHc
Confidence 11 14677899999999998 6788764 7888999999999864
No 149
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=98.78 E-value=7.1e-08 Score=63.16 Aligned_cols=83 Identities=23% Similarity=0.281 Sum_probs=60.4
Q ss_pred CCEEEEEe-CCCChhHHhhhHHHHHHHhhcCC--ceEEEEEecCC--------------------c--hhhhHhcCCCc-
Q psy5679 61 NPVLAYFF-KPSCGFCKQLEPKISTVSETTSG--VEFVKINVENG--------------------G--GEIAREFEVQA- 114 (149)
Q Consensus 61 ~~~vv~f~-~~~C~~C~~~~~~l~~~~~~~~~--v~~~~vd~~~~--------------------~--~~~~~~~~i~~- 114 (149)
++++|.|| ++||+.|....+.+.++.+++++ +.++.|+.+.. . ..+.+.|++..
T Consensus 29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~g~~~~ 108 (149)
T cd03018 29 KPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAWAEENGLTFPLLSDFWPHGEVAKAYGVFDE 108 (149)
T ss_pred CeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCCCceEecCCCchhHHHHHhCCccc
Confidence 78888887 89999999999999999999864 88888876532 1 34667788773
Q ss_pred ---cc--EEEEE-eCCeeeeeeeCCC----CHHHHHHHH
Q psy5679 115 ---VP--TVIGF-RNGDPVDTVVGNA----DQDVIQTLV 143 (149)
Q Consensus 115 ---~P--t~~~~-~~g~~~~~~~g~~----~~~~l~~~i 143 (149)
.| +.+++ ++|+.+..+.|.. +..++.+.|
T Consensus 109 ~~~~~~~~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~ 147 (149)
T cd03018 109 DLGVAERAVFVIDRDGIIRYAWVSDDGEPRDLPDYDEAL 147 (149)
T ss_pred cCCCccceEEEECCCCEEEEEEecCCcccccchhHHHHh
Confidence 23 66666 6899988887742 345555444
No 150
>KOG0911|consensus
Probab=98.78 E-value=6.9e-09 Score=71.14 Aligned_cols=90 Identities=22% Similarity=0.271 Sum_probs=79.7
Q ss_pred eEEEecchhhHHHHHcCCCCEEEEEeCCCChhHHhhhHHHHHHHhhcCCceEEEEEecCCchhhhHhcCCCcccEEEEEe
Q psy5679 43 AYLIIEKIDDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTVIGFR 122 (149)
Q Consensus 43 ~v~~i~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~~i~~~Pt~~~~~ 122 (149)
+++.+...+.| ...+++..++.||++||..|..+...+..+++..+++.+++.+.++. ++++..+.+...|.++++.
T Consensus 2 ~v~~i~~~~~f--~~~~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~~~~~~k~~a~~~-~eis~~~~v~~vp~~~~~~ 78 (227)
T KOG0911|consen 2 TVQFIVFQEQF--LDQKGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFKNAQFLKLEAEEF-PEISNLIAVEAVPYFVFFF 78 (227)
T ss_pred CceeehhHHHH--HHhccchhhhhhhhhhhhhhhhHHHHHHHHHHhhhhheeeeehhhhh-hHHHHHHHHhcCceeeeee
Confidence 46667766777 33689999999999999999999999999999997799999999999 9999999999999999999
Q ss_pred CCeeeeeeeCCCC
Q psy5679 123 NGDPVDTVVGNAD 135 (149)
Q Consensus 123 ~g~~~~~~~g~~~ 135 (149)
.|+.+.+..|...
T Consensus 79 ~~~~v~~l~~~~~ 91 (227)
T KOG0911|consen 79 LGEKVDRLSGADP 91 (227)
T ss_pred cchhhhhhhccCc
Confidence 9998888888433
No 151
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.77 E-value=1.1e-07 Score=54.44 Aligned_cols=68 Identities=24% Similarity=0.543 Sum_probs=49.3
Q ss_pred EEEEeCCCChhHHhhhHHHHHHHhhcCCceEEEEEecCCchhhhHhc----CCCcccEEEEEeCCeeeeeeeCCCCHHHH
Q psy5679 64 LAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREF----EVQAVPTVIGFRNGDPVDTVVGNADQDVI 139 (149)
Q Consensus 64 vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~----~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l 139 (149)
+++|+++||++|..+...+.+. ++.+..+|++.. ....+.+ ++..+|++++ +|+ ...| .+.+.|
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~-----~i~~~~~~i~~~-~~~~~~~~~~~~~~~vP~i~~--~~~---~i~g-~~~~~l 69 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER-----GIPFEEVDVDED-PEALEELKKLNGYRSVPVVVI--GDE---HLSG-FRPDKL 69 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC-----CCCeEEEeCCCC-HHHHHHHHHHcCCcccCEEEE--CCE---EEec-CCHHHH
Confidence 5789999999999998888763 466777787766 4444333 6889999976 563 4555 677777
Q ss_pred HHHH
Q psy5679 140 QTLV 143 (149)
Q Consensus 140 ~~~i 143 (149)
.+++
T Consensus 70 ~~~~ 73 (73)
T cd02976 70 RALL 73 (73)
T ss_pred HhhC
Confidence 7653
No 152
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=98.74 E-value=7.6e-08 Score=65.38 Aligned_cols=41 Identities=12% Similarity=0.236 Sum_probs=36.0
Q ss_pred CCCCEEEEEeCCCChhHHhhhHHHHHHHhhcCC--ceEEEEEec
Q psy5679 59 GRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG--VEFVKINVE 100 (149)
Q Consensus 59 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~--v~~~~vd~~ 100 (149)
++++++|.|||+||+.|.. .+.|+++.++|.+ +.++.+.++
T Consensus 24 ~GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~~gl~Vlg~p~n 66 (183)
T PRK10606 24 AGNVLLIVNVASKCGLTPQ-YEQLENIQKAWADQGFVVLGFPCN 66 (183)
T ss_pred CCCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhhCCeEEEEeecc
Confidence 5799999999999999975 6799999999975 888888874
No 153
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=98.74 E-value=4.6e-07 Score=57.14 Aligned_cols=90 Identities=13% Similarity=0.200 Sum_probs=69.0
Q ss_pred cCCCCEEEEEeCC----CChhHHhhhHHHHHHHhhcCC-ceEEEEEecCC-chhhhHhcCCCcccEEEEE--eCC--eee
Q psy5679 58 RGRNPVLAYFFKP----SCGFCKQLEPKISTVSETTSG-VEFVKINVENG-GGEIAREFEVQAVPTVIGF--RNG--DPV 127 (149)
Q Consensus 58 ~~~~~~vv~f~~~----~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~-~~~~~~~~~i~~~Pt~~~~--~~g--~~~ 127 (149)
.+.|.++|+++++ ||..|+..... +++.+.... +.+...|++.. +..++..+++.++|+++++ +++ +.+
T Consensus 15 ~e~K~llVylhs~~~~~~~~fc~~~l~~-~~v~~~ln~~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~~~~~~~~vv 93 (116)
T cd02991 15 QELRFLLVYLHGDDHQDTDEFCRNTLCA-PEVIEYINTRMLFWACSVAKPEGYRVSQALRERTYPFLAMIMLKDNRMTIV 93 (116)
T ss_pred hhCCEEEEEEeCCCCccHHHHHHHHcCC-HHHHHHHHcCEEEEEEecCChHHHHHHHHhCCCCCCEEEEEEecCCceEEE
Confidence 7899999999999 78888655321 233333333 78888888755 3578899999999999998 243 457
Q ss_pred eeeeCCCCHHHHHHHHHHHhc
Q psy5679 128 DTVVGNADQDVIQTLVSKLSQ 148 (149)
Q Consensus 128 ~~~~g~~~~~~l~~~i~~~~~ 148 (149)
.+..|..+.+++...|+..+.
T Consensus 94 ~~i~G~~~~~~ll~~L~~~~~ 114 (116)
T cd02991 94 GRLEGLIQPEDLINRLTFIMD 114 (116)
T ss_pred EEEeCCCCHHHHHHHHHHHHh
Confidence 799999999999999988765
No 154
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.69 E-value=2.8e-07 Score=72.04 Aligned_cols=82 Identities=13% Similarity=0.204 Sum_probs=70.7
Q ss_pred CCCEEEEEeCCCChhHHhhhHHHHHHHhhcCCceEEEEEecCCchhhhHhcCCCcccEEEEEeCCeeeeeeeCCCCHHHH
Q psy5679 60 RNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTVIGFRNGDPVDTVVGNADQDVI 139 (149)
Q Consensus 60 ~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l 139 (149)
+...+..|+++.||+|......+.+++..++++..-.+|..+. ++++++|++.++|++++ ||+. .+.|..+.+++
T Consensus 117 ~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~~-~~~~~~~~v~~VP~~~i--~~~~--~~~g~~~~~~~ 191 (515)
T TIGR03140 117 GPLHFETYVSLTCQNCPDVVQALNQMALLNPNISHTMIDGALF-QDEVEALGIQGVPAVFL--NGEE--FHNGRMDLAEL 191 (515)
T ss_pred CCeEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEchhC-HHHHHhcCCcccCEEEE--CCcE--EEecCCCHHHH
Confidence 3445888999999999999999999999999988999999999 99999999999999987 7765 46687888888
Q ss_pred HHHHHHH
Q psy5679 140 QTLVSKL 146 (149)
Q Consensus 140 ~~~i~~~ 146 (149)
.+.+.+.
T Consensus 192 ~~~l~~~ 198 (515)
T TIGR03140 192 LEKLEET 198 (515)
T ss_pred HHHHhhc
Confidence 7776543
No 155
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=98.68 E-value=2.4e-07 Score=51.42 Aligned_cols=56 Identities=23% Similarity=0.560 Sum_probs=43.9
Q ss_pred EEEEeCCCChhHHhhhHHHHHHHhhcCCceEEEEEecCCchh----hhHhcCCCcccEEEEEeCCeee
Q psy5679 64 LAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGE----IAREFEVQAVPTVIGFRNGDPV 127 (149)
Q Consensus 64 vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~----~~~~~~i~~~Pt~~~~~~g~~~ 127 (149)
+++|+.+||++|......|++. ++.+..+|++.. ++ +.+..|..++|++++ +|+.+
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~-----~i~y~~~dv~~~-~~~~~~l~~~~g~~~~P~v~i--~g~~I 60 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEK-----GIPYEEVDVDED-EEAREELKELSGVRTVPQVFI--DGKFI 60 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT-----TBEEEEEEGGGS-HHHHHHHHHHHSSSSSSEEEE--TTEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHc-----CCeeeEcccccc-hhHHHHHHHHcCCCccCEEEE--CCEEC
Confidence 5789999999999999888544 477888888877 43 334459999999987 88753
No 156
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=98.67 E-value=3.9e-07 Score=53.80 Aligned_cols=76 Identities=14% Similarity=0.398 Sum_probs=61.4
Q ss_pred EEEEeCCCChhHHhhhHHHHHHHhhcCCceEEEEEecCCchhhhHhcCCCcccEEEEEeCCe----eeeeeeCCCCHHHH
Q psy5679 64 LAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTVIGFRNGD----PVDTVVGNADQDVI 139 (149)
Q Consensus 64 vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~~i~~~Pt~~~~~~g~----~~~~~~g~~~~~~l 139 (149)
+++|+.+.|+-|......++++....+ +.+-.+|++++ +.+..+|+. .+|.+.+ +|. ......+..+.+.|
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~~-~~l~~vDI~~d-~~l~~~Y~~-~IPVl~~--~~~~~~~~~~~~~~~~d~~~L 76 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEFP-FELEEVDIDED-PELFEKYGY-RIPVLHI--DGIRQFKEQEELKWRFDEEQL 76 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTST-CEEEEEETTTT-HHHHHHSCT-STSEEEE--TT-GGGCTSEEEESSB-HHHH
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhcC-ceEEEEECCCC-HHHHHHhcC-CCCEEEE--cCcccccccceeCCCCCHHHH
Confidence 788999999999999999999877765 89999999999 999999995 8999877 551 12345566899999
Q ss_pred HHHHH
Q psy5679 140 QTLVS 144 (149)
Q Consensus 140 ~~~i~ 144 (149)
.+||+
T Consensus 77 ~~~L~ 81 (81)
T PF05768_consen 77 RAWLE 81 (81)
T ss_dssp HHHHH
T ss_pred HHHhC
Confidence 99985
No 157
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=98.66 E-value=3.8e-07 Score=53.68 Aligned_cols=70 Identities=20% Similarity=0.372 Sum_probs=49.5
Q ss_pred EEEEeCCCChhHHhhhHHHHHHHhhcCCceEEEEEecCCc----hhhhHhcCCCcccEEEEEeCCeeeeeeeCCCCHHHH
Q psy5679 64 LAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGG----GEIAREFEVQAVPTVIGFRNGDPVDTVVGNADQDVI 139 (149)
Q Consensus 64 vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~----~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l 139 (149)
+++|+++|||+|..+...|+++... ..++.++.+... ..+.+.+|..++|.+++ +|+.+ | ..+++
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~~--~g~~i----g--g~~~~ 70 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGVK---PAVVELDQHEDGSEIQDYLQELTGQRTVPNVFI--GGKFI----G--GCDDL 70 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCCC---cEEEEEeCCCChHHHHHHHHHHhCCCCCCeEEE--CCEEE----c--CHHHH
Confidence 5789999999999999999998664 456666665441 23556678999999855 78654 2 44555
Q ss_pred HHHHH
Q psy5679 140 QTLVS 144 (149)
Q Consensus 140 ~~~i~ 144 (149)
.++.+
T Consensus 71 ~~~~~ 75 (82)
T cd03419 71 MALHK 75 (82)
T ss_pred HHHHH
Confidence 55443
No 158
>PRK13190 putative peroxiredoxin; Provisional
Probab=98.66 E-value=2.8e-07 Score=63.63 Aligned_cols=88 Identities=22% Similarity=0.123 Sum_probs=64.6
Q ss_pred CCCCEEE-EEeCCCChhHHhhhHHHHHHHhhcCC--ceEEEEEecCC--------------------------chhhhHh
Q psy5679 59 GRNPVLA-YFFKPSCGFCKQLEPKISTVSETTSG--VEFVKINVENG--------------------------GGEIARE 109 (149)
Q Consensus 59 ~~~~~vv-~f~~~~C~~C~~~~~~l~~~~~~~~~--v~~~~vd~~~~--------------------------~~~~~~~ 109 (149)
.++.+++ .||++||+.|....+.|.++..++++ +.++.+.+|.. +..+++.
T Consensus 26 ~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~ 105 (202)
T PRK13190 26 KGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELARE 105 (202)
T ss_pred CCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHHH
Confidence 4565555 58999999999999999999888864 77777776521 1356678
Q ss_pred cCCC------cccEEEEE-eCCeeeeee----eCCCCHHHHHHHHHHH
Q psy5679 110 FEVQ------AVPTVIGF-RNGDPVDTV----VGNADQDVIQTLVSKL 146 (149)
Q Consensus 110 ~~i~------~~Pt~~~~-~~g~~~~~~----~g~~~~~~l~~~i~~~ 146 (149)
||+. .+|+.+++ ++|+..... .+..+.+++...|+.+
T Consensus 106 ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l 153 (202)
T PRK13190 106 YNLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKAL 153 (202)
T ss_pred cCCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 8874 48998888 688876544 2336888888888765
No 159
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=98.65 E-value=4.8e-07 Score=61.71 Aligned_cols=88 Identities=11% Similarity=0.145 Sum_probs=66.3
Q ss_pred CCCCEEEEEe-CCCChhHHhhhHHHHHHHhhcCC--ceEEEEEecCC------------------------chhhhHhcC
Q psy5679 59 GRNPVLAYFF-KPSCGFCKQLEPKISTVSETTSG--VEFVKINVENG------------------------GGEIAREFE 111 (149)
Q Consensus 59 ~~~~~vv~f~-~~~C~~C~~~~~~l~~~~~~~~~--v~~~~vd~~~~------------------------~~~~~~~~~ 111 (149)
.++++++.|| +.||+.|....+.|.+..+++.+ +.++.|+.|.. +..+++.||
T Consensus 30 ~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~yg 109 (187)
T PRK10382 30 EGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFD 109 (187)
T ss_pred CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHcC
Confidence 5778999999 99999999999999999999864 77777776532 145678888
Q ss_pred CC----cc--cEEEEE-eCCeeeeeeeC----CCCHHHHHHHHHHH
Q psy5679 112 VQ----AV--PTVIGF-RNGDPVDTVVG----NADQDVIQTLVSKL 146 (149)
Q Consensus 112 i~----~~--Pt~~~~-~~g~~~~~~~g----~~~~~~l~~~i~~~ 146 (149)
+. ++ |+.+++ ++|+....+.. ..+.+++...|+.+
T Consensus 110 v~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~al 155 (187)
T PRK10382 110 NMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAA 155 (187)
T ss_pred CCcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHhh
Confidence 83 55 888888 68987765432 15777777777553
No 160
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=98.64 E-value=2e-07 Score=60.35 Aligned_cols=76 Identities=18% Similarity=0.259 Sum_probs=59.1
Q ss_pred CCCCEEEEEe-CCCChhHHhhhHHHHHHHhhcC--CceEEEEEecCC---------------------chhhhHhcCCCc
Q psy5679 59 GRNPVLAYFF-KPSCGFCKQLEPKISTVSETTS--GVEFVKINVENG---------------------GGEIAREFEVQA 114 (149)
Q Consensus 59 ~~~~~vv~f~-~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~~---------------------~~~~~~~~~i~~ 114 (149)
.+++++|+|| +.||+.|....+.+.++.+++. ++.++.|..+.. ...+.+.||+..
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g~~~ 100 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKEGGLNFPLLSDPDGEFAKAYGVLI 100 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcccCCCceEEECCChHHHHHcCCcc
Confidence 6899999999 7899999999999999998874 378888776432 135667788877
Q ss_pred cc---------EEEEE-eCCeeeeeeeCCC
Q psy5679 115 VP---------TVIGF-RNGDPVDTVVGNA 134 (149)
Q Consensus 115 ~P---------t~~~~-~~g~~~~~~~g~~ 134 (149)
.| +++++ ++|+.+..+.|..
T Consensus 101 ~~~~~~~~~~p~~~lid~~g~i~~~~~~~~ 130 (140)
T cd02971 101 EKSAGGGLAARATFIIDPDGKIRYVEVEPL 130 (140)
T ss_pred ccccccCceeEEEEEECCCCcEEEEEecCC
Confidence 66 56666 6799988888854
No 161
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=98.64 E-value=3.3e-07 Score=60.00 Aligned_cols=40 Identities=25% Similarity=0.598 Sum_probs=32.4
Q ss_pred CCCCEEEEEeCCCChhHHhhhHHHHHHHhhcCCceEEEEE
Q psy5679 59 GRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKIN 98 (149)
Q Consensus 59 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd 98 (149)
..+..+++|+.++||+|..+.+.++++...++++.+...+
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~ 43 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDPDVRVVFKE 43 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEe
Confidence 4678899999999999999999999988887665444433
No 162
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=98.63 E-value=7.4e-07 Score=65.01 Aligned_cols=103 Identities=13% Similarity=0.366 Sum_probs=72.2
Q ss_pred eEEEecchhhHHHHHcCCCCEEEEEeCCCChh--HHh---hhHHHHHHH-hhcC--CceEEEEEecCCchhhhHhcCCCc
Q psy5679 43 AYLIIEKIDDFKQTIRGRNPVLAYFFKPSCGF--CKQ---LEPKISTVS-ETTS--GVEFVKINVENGGGEIAREFEVQA 114 (149)
Q Consensus 43 ~v~~i~~~~~~~~~~~~~~~~vv~f~~~~C~~--C~~---~~~~l~~~~-~~~~--~v~~~~vd~~~~~~~~~~~~~i~~ 114 (149)
-|+.++. ++|++++.+-...+|+|+.+--.. .++ +...+-+++ +... ++.|+.||..+. ..+++++|+..
T Consensus 35 RVi~Lne-KNfk~~lKkyd~l~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd-~klAKKLgv~E 112 (383)
T PF01216_consen 35 RVIDLNE-KNFKRALKKYDVLVLYYHEPVESDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKD-AKLAKKLGVEE 112 (383)
T ss_dssp -CEEE-T-TTHHHHHHH-SEEEEEEE--STSSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTT-HHHHHHHT--S
T ss_pred ceEEcch-hHHHHHHHhhcEEEEEEecCCccCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHH-HHHHHhcCccc
Confidence 3888885 999999988888888888875322 111 112222333 3332 499999999999 99999999999
Q ss_pred ccEEEEEeCCeeeeeeeCCCCHHHHHHHHHHHhc
Q psy5679 115 VPTVIGFRNGDPVDTVVGNADQDVIQTLVSKLSQ 148 (149)
Q Consensus 115 ~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~~ 148 (149)
.+++.+|++|+.+ .|.|..+.+.+.+||..++.
T Consensus 113 ~~SiyVfkd~~~I-EydG~~saDtLVeFl~dl~e 145 (383)
T PF01216_consen 113 EGSIYVFKDGEVI-EYDGERSADTLVEFLLDLLE 145 (383)
T ss_dssp TTEEEEEETTEEE-EE-S--SHHHHHHHHHHHHS
T ss_pred cCcEEEEECCcEE-EecCccCHHHHHHHHHHhcc
Confidence 9999999999997 56699999999999998764
No 163
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=98.59 E-value=2.6e-06 Score=54.77 Aligned_cols=104 Identities=13% Similarity=0.247 Sum_probs=79.4
Q ss_pred EEEecchhhHHHHHcCCCCEEEEEeCC--CC-hhH-HhhhHHHHHHHhhcCC--ceEEEEEecCCchhhhHhcCCC--cc
Q psy5679 44 YLIIEKIDDFKQTIRGRNPVLAYFFKP--SC-GFC-KQLEPKISTVSETTSG--VEFVKINVENGGGEIAREFEVQ--AV 115 (149)
Q Consensus 44 v~~i~~~~~~~~~~~~~~~~vv~f~~~--~C-~~C-~~~~~~l~~~~~~~~~--v~~~~vd~~~~~~~~~~~~~i~--~~ 115 (149)
++++++.+.++..-..++..+|-|.-. .| +.+ ......+.++|+.+++ +.|+.+|.+.. ..+.+.||+. ++
T Consensus 4 ~~~l~~~~~~~~~C~~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~-~~~~~~fgl~~~~~ 82 (130)
T cd02983 4 IIELTSEDVFEETCEEKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQ-LDLEEALNIGGFGY 82 (130)
T ss_pred eEEecCHHHHHhhccCCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCccc-HHHHHHcCCCccCC
Confidence 778888666665555567778877542 23 223 5678899999999987 89999999999 8899999995 49
Q ss_pred cEEEEEeCCeeeee-eeCCCCHHHHHHHHHHHhc
Q psy5679 116 PTVIGFRNGDPVDT-VVGNADQDVIQTLVSKLSQ 148 (149)
Q Consensus 116 Pt~~~~~~g~~~~~-~~g~~~~~~l~~~i~~~~~ 148 (149)
|+++++...+..+. +.|..+.+.|.+|+++++.
T Consensus 83 P~v~i~~~~~~KY~~~~~~~t~e~i~~Fv~~~l~ 116 (130)
T cd02983 83 PAMVAINFRKMKFATLKGSFSEDGINEFLRELSY 116 (130)
T ss_pred CEEEEEecccCccccccCccCHHHHHHHHHHHHc
Confidence 99999844332222 6788999999999998864
No 164
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=98.58 E-value=6.4e-07 Score=51.60 Aligned_cols=67 Identities=22% Similarity=0.464 Sum_probs=49.8
Q ss_pred EEEEeCCCChhHHhhhHHHHHHHhhcCCceEEEEEecCCchhhhHhc---CCCcccEEEEEeCCeeeeeeeCCCCHHHHH
Q psy5679 64 LAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREF---EVQAVPTVIGFRNGDPVDTVVGNADQDVIQ 140 (149)
Q Consensus 64 vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~---~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~ 140 (149)
+.+|..++|++|+..+..|++. ++.+-.+|++++ +.....+ |...+|++++ +|+. ...| .+++.|.
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~-----~i~~~~~di~~~-~~~~~~~~~~g~~~vP~v~~--~g~~--~~~G-~~~~~~~ 69 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEH-----GIAFEEINIDEQ-PEAIDYVKAQGFRQVPVIVA--DGDL--SWSG-FRPDKLK 69 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHC-----CCceEEEECCCC-HHHHHHHHHcCCcccCEEEE--CCCc--EEec-cCHHHHH
Confidence 3578899999999999988763 577778888877 5554444 8889999876 6643 4556 6777776
Q ss_pred H
Q psy5679 141 T 141 (149)
Q Consensus 141 ~ 141 (149)
+
T Consensus 70 ~ 70 (72)
T TIGR02194 70 A 70 (72)
T ss_pred h
Confidence 5
No 165
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=98.58 E-value=3.2e-07 Score=63.08 Aligned_cols=78 Identities=22% Similarity=0.502 Sum_probs=55.8
Q ss_pred CCCCEEEEEeCCCChhHHhhhHHHHHHHhhcCCceEEEEE--ecC--C--------------------------------
Q psy5679 59 GRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKIN--VEN--G-------------------------------- 102 (149)
Q Consensus 59 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd--~~~--~-------------------------------- 102 (149)
..+..+++|+.+.|++|+++.+.+.+ ...++.+..+. ... .
T Consensus 76 ~~~~~i~~f~D~~Cp~C~~~~~~l~~---~~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~~~ 152 (197)
T cd03020 76 NGKRVVYVFTDPDCPYCRKLEKELKP---NADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPPAA 152 (197)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHhh---ccCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCCcc
Confidence 46889999999999999999998877 22233332222 111 0
Q ss_pred --------chhhhHhcCCCcccEEEEEeCCeeeeeeeCCCCHHHHHHHH
Q psy5679 103 --------GGEIAREFEVQAVPTVIGFRNGDPVDTVVGNADQDVIQTLV 143 (149)
Q Consensus 103 --------~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i 143 (149)
...+++++|++++|+++ +.+|+. ..|..+.++|.++|
T Consensus 153 ~~~~~i~~~~~l~~~~gi~gtPtii-~~~G~~---~~G~~~~~~l~~~L 197 (197)
T cd03020 153 SCDNPVAANLALGRQLGVNGTPTIV-LADGRV---VPGAPPAAQLEALL 197 (197)
T ss_pred ccCchHHHHHHHHHHcCCCcccEEE-ECCCeE---ecCCCCHHHHHhhC
Confidence 14567889999999997 778876 56877888887764
No 166
>PRK15000 peroxidase; Provisional
Probab=98.57 E-value=8.7e-07 Score=61.12 Aligned_cols=87 Identities=17% Similarity=0.236 Sum_probs=66.6
Q ss_pred CCCCEEEEEeC-CCChhHHhhhHHHHHHHhhcCC--ceEEEEEecCC---------------------------chhhhH
Q psy5679 59 GRNPVLAYFFK-PSCGFCKQLEPKISTVSETTSG--VEFVKINVENG---------------------------GGEIAR 108 (149)
Q Consensus 59 ~~~~~vv~f~~-~~C~~C~~~~~~l~~~~~~~~~--v~~~~vd~~~~---------------------------~~~~~~ 108 (149)
+++.+++.||. .||+.|....+.|.++.+++.+ +.++.+.+|.. +..+++
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~ 112 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQK 112 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHHH
Confidence 57899999999 5999999999999999999874 77888877632 124556
Q ss_pred hcCCC------cccEEEEE-eCCeeeeeeeCC----CCHHHHHHHHHH
Q psy5679 109 EFEVQ------AVPTVIGF-RNGDPVDTVVGN----ADQDVIQTLVSK 145 (149)
Q Consensus 109 ~~~i~------~~Pt~~~~-~~g~~~~~~~g~----~~~~~l~~~i~~ 145 (149)
.||+. .+|+.+++ ++|+....+.|. .+.+++...|+.
T Consensus 113 ~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l~a 160 (200)
T PRK15000 113 AYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVDA 160 (200)
T ss_pred HcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHH
Confidence 78887 68888888 689987766552 466777777655
No 167
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=98.57 E-value=9.9e-07 Score=51.76 Aligned_cols=72 Identities=22% Similarity=0.474 Sum_probs=50.2
Q ss_pred CCCCEEEEEeCCCChhHHhhhHHHHHHHhhcCCceEEEEEecCC--chhhhHhcCCCcccEEEEEeCCeeeeeeeCCCCH
Q psy5679 59 GRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENG--GGEIAREFEVQAVPTVIGFRNGDPVDTVVGNADQ 136 (149)
Q Consensus 59 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~--~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~ 136 (149)
.++.-+++|+.+||++|.+.+..|++. ++.+..+|+++. ...+.+..|...+|.+++ +|+.+. ..
T Consensus 5 ~~~~~V~ly~~~~Cp~C~~ak~~L~~~-----gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~i--~g~~ig------G~ 71 (79)
T TIGR02190 5 RKPESVVVFTKPGCPFCAKAKATLKEK-----GYDFEEIPLGNDARGRSLRAVTGATTVPQVFI--GGKLIG------GS 71 (79)
T ss_pred CCCCCEEEEECCCCHhHHHHHHHHHHc-----CCCcEEEECCCChHHHHHHHHHCCCCcCeEEE--CCEEEc------CH
Confidence 345557899999999999999998754 455666676544 134555678899999976 886532 33
Q ss_pred HHHHHHH
Q psy5679 137 DVIQTLV 143 (149)
Q Consensus 137 ~~l~~~i 143 (149)
++|..+|
T Consensus 72 ~~l~~~l 78 (79)
T TIGR02190 72 DELEAYL 78 (79)
T ss_pred HHHHHHh
Confidence 5555544
No 168
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=98.56 E-value=3.2e-07 Score=59.50 Aligned_cols=42 Identities=26% Similarity=0.426 Sum_probs=36.5
Q ss_pred CCCCEEEEEeCCCChh-HHhhhHHHHHHHhhcCC-----ceEEEEEec
Q psy5679 59 GRNPVLAYFFKPSCGF-CKQLEPKISTVSETTSG-----VEFVKINVE 100 (149)
Q Consensus 59 ~~~~~vv~f~~~~C~~-C~~~~~~l~~~~~~~~~-----v~~~~vd~~ 100 (149)
.+++++|.||++||++ |....+.+.++.+.+.+ +.++.|..|
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d 68 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVD 68 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEEC
Confidence 5789999999999998 99999999999888753 788888764
No 169
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=98.55 E-value=1.6e-06 Score=54.25 Aligned_cols=99 Identities=11% Similarity=0.074 Sum_probs=76.5
Q ss_pred EecchhhHHHHHcCCCCEEEEEeCCCChhHHhhhHHHHHHHhh---cCC-ceEEEEEecCCchhhhHhcCCCc--ccEEE
Q psy5679 46 IIEKIDDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSET---TSG-VEFVKINVENGGGEIAREFEVQA--VPTVI 119 (149)
Q Consensus 46 ~i~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~---~~~-v~~~~vd~~~~~~~~~~~~~i~~--~Pt~~ 119 (149)
+++ .++...+...+.+..++|+ .-..-..+...+.++++. +++ +.|+.+|.+.. ....+.+|++. +|.+.
T Consensus 3 e~t-~e~~~~~~~~~~~~~~l~f--~~~~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~-~~~~~~fgl~~~~~P~i~ 78 (111)
T cd03072 3 EIT-FENAEELTEEGLPFLILFH--DKDDLESLKEFKQAVARQLISEKGAINFLTADGDKF-RHPLLHLGKTPADLPVIA 78 (111)
T ss_pred ccc-cccHHHHhcCCCCeEEEEe--cchHHHHHHHHHHHHHHHHHhcCceEEEEEEechHh-hhHHHHcCCCHhHCCEEE
Confidence 444 4777777777777777777 223347788999999999 998 99999999998 77999999997 99999
Q ss_pred EEeCCe-eeee-eeCCCCHHHHHHHHHHHhc
Q psy5679 120 GFRNGD-PVDT-VVGNADQDVIQTLVSKLSQ 148 (149)
Q Consensus 120 ~~~~g~-~~~~-~~g~~~~~~l~~~i~~~~~ 148 (149)
+..... .... ..+..+.+.|.+|+++.+.
T Consensus 79 i~~~~~~~Ky~~~~~~~t~~~i~~Fv~~~~~ 109 (111)
T cd03072 79 IDSFRHMYLFPDFEDVYVPGKLKQFVLDLHS 109 (111)
T ss_pred EEcchhcCcCCCCccccCHHHHHHHHHHHhc
Confidence 884322 1222 5577889999999998764
No 170
>PRK10329 glutaredoxin-like protein; Provisional
Probab=98.49 E-value=4.6e-06 Score=49.22 Aligned_cols=71 Identities=24% Similarity=0.389 Sum_probs=54.1
Q ss_pred EEEEeCCCChhHHhhhHHHHHHHhhcCCceEEEEEecCCchhhh---HhcCCCcccEEEEEeCCeeeeeeeCCCCHHHHH
Q psy5679 64 LAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIA---REFEVQAVPTVIGFRNGDPVDTVVGNADQDVIQ 140 (149)
Q Consensus 64 vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~---~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~ 140 (149)
+++|..+||++|...+..|++. ++.|-.+|+++. ++.. ...|...+|+++. ++. ...| .+.+++.
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~~-----gI~~~~idi~~~-~~~~~~~~~~g~~~vPvv~i--~~~---~~~G-f~~~~l~ 70 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMESR-----GFDFEMINVDRV-PEAAETLRAQGFRQLPVVIA--GDL---SWSG-FRPDMIN 70 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHHC-----CCceEEEECCCC-HHHHHHHHHcCCCCcCEEEE--CCE---EEec-CCHHHHH
Confidence 6789999999999999888652 578888888877 5432 3457789999976 553 3557 7899998
Q ss_pred HHHHHH
Q psy5679 141 TLVSKL 146 (149)
Q Consensus 141 ~~i~~~ 146 (149)
+++...
T Consensus 71 ~~~~~~ 76 (81)
T PRK10329 71 RLHPAP 76 (81)
T ss_pred HHHHhh
Confidence 887654
No 171
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=98.48 E-value=3.4e-06 Score=51.20 Aligned_cols=93 Identities=14% Similarity=0.222 Sum_probs=70.7
Q ss_pred EEecchhhHHHHHcCCCCEEEEEeCCCChhHHhhhHHHHHHHhhcCC-ceEEEEEecCCchhhhHhcCCCcccEEEEEeC
Q psy5679 45 LIIEKIDDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENGGGEIAREFEVQAVPTVIGFRN 123 (149)
Q Consensus 45 ~~i~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~~~~~~~~~~i~~~Pt~~~~~~ 123 (149)
..+++.++++..+..+..++|-|+.++|. .....+.++|..+++ +.|+.+. + .++...+++. .|++++|+.
T Consensus 2 ~~i~s~~~l~~~~~~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~~~~F~~~~---~-~~~~~~~~~~-~~~i~l~~~ 73 (97)
T cd02981 2 KELTSKEELEKFLDKDDVVVVGFFKDEES---EEYKTFEKVAESLRDDYGFGHTS---D-KEVAKKLKVK-PGSVVLFKP 73 (97)
T ss_pred eecCCHHHHHHHhccCCeEEEEEECCCCc---HHHHHHHHHHHhcccCCeEEEEC---h-HHHHHHcCCC-CCceEEeCC
Confidence 45667778888788889999999998876 466788899999975 8887665 3 4677777765 488888855
Q ss_pred C-eeeeeeeCCCCHHHHHHHHHH
Q psy5679 124 G-DPVDTVVGNADQDVIQTLVSK 145 (149)
Q Consensus 124 g-~~~~~~~g~~~~~~l~~~i~~ 145 (149)
. .....+.|..+.+.|.+||..
T Consensus 74 ~~~~~~~y~g~~~~~~l~~fi~~ 96 (97)
T cd02981 74 FEEEPVEYDGEFTEESLVEFIKD 96 (97)
T ss_pred cccCCccCCCCCCHHHHHHHHHh
Confidence 3 333468887788999999875
No 172
>PHA03050 glutaredoxin; Provisional
Probab=98.47 E-value=1.6e-06 Score=53.95 Aligned_cols=73 Identities=16% Similarity=0.225 Sum_probs=48.4
Q ss_pred hHHHHHcCCCCEEEEEeCCCChhHHhhhHHHHHHHhhcCCceEEEEEecCCc----hhhhHhcCCCcccEEEEEeCCeee
Q psy5679 52 DFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGG----GEIAREFEVQAVPTVIGFRNGDPV 127 (149)
Q Consensus 52 ~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~----~~~~~~~~i~~~Pt~~~~~~g~~~ 127 (149)
..++.+.++ -++.|..+|||+|......|++.....+.+..+.+|-...+ ..+.+..|-+.+|++++ +|+.+
T Consensus 5 ~v~~~i~~~--~V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI--~g~~i 80 (108)
T PHA03050 5 FVQQRLANN--KVTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRIFF--GKTSI 80 (108)
T ss_pred HHHHHhccC--CEEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEE--CCEEE
Confidence 344455333 37789999999999999999888655443444444421111 24556678889999977 88765
Q ss_pred e
Q psy5679 128 D 128 (149)
Q Consensus 128 ~ 128 (149)
.
T Consensus 81 G 81 (108)
T PHA03050 81 G 81 (108)
T ss_pred e
Confidence 3
No 173
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=98.47 E-value=4.7e-06 Score=55.10 Aligned_cols=83 Identities=24% Similarity=0.427 Sum_probs=63.6
Q ss_pred cCCCCEEEEEeCCCChhHHhhhHHHHHHHhhc--CC-ceEEEEEecCC--------------------------------
Q psy5679 58 RGRNPVLAYFFKPSCGFCKQLEPKISTVSETT--SG-VEFVKINVENG-------------------------------- 102 (149)
Q Consensus 58 ~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~--~~-v~~~~vd~~~~-------------------------------- 102 (149)
...+.+|+.|+...||+|.++.+.+.++.+++ ++ +.|...++...
T Consensus 10 ~~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (162)
T PF13462_consen 10 PDAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPLDKHSSLRAAMAAECVADQGKYFWFFHELLFSQQ 89 (162)
T ss_dssp TTTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHC
T ss_pred CCCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEccccchhHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Confidence 35678899999999999999999999999998 55 77777764211
Q ss_pred -----------------------------------chhhhHhcCCCcccEEEEEeCCeeeeeeeCCCCHHHHHHHHHH
Q psy5679 103 -----------------------------------GGEIAREFEVQAVPTVIGFRNGDPVDTVVGNADQDVIQTLVSK 145 (149)
Q Consensus 103 -----------------------------------~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~ 145 (149)
.....++++|.++||+++ ||+. ..|..+.+++.++|++
T Consensus 90 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~tPt~~i--nG~~---~~~~~~~~~l~~~Id~ 162 (162)
T PF13462_consen 90 ENFENKKDIAANAGGSNEQFNKCLNSDEIKAQLEADSQLARQLGITGTPTFFI--NGKY---VVGPYTIEELKELIDK 162 (162)
T ss_dssp HSTSSHHHHHHHTTSHHHHHHHHHTSHHHHHHHHHHHHHHHHHT-SSSSEEEE--TTCE---EETTTSHHHHHHHHHH
T ss_pred hccchhHHHHHHcCCCHHHHHHHhhchHHHHHHHHHHHHHHHcCCccccEEEE--CCEE---eCCCCCHHHHHHHHcC
Confidence 012335789999999999 9977 4677899999998874
No 174
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=98.44 E-value=2.5e-06 Score=60.83 Aligned_cols=84 Identities=19% Similarity=0.382 Sum_probs=59.1
Q ss_pred CCCCEEEEEeCCCChhHHhhhHHHHHHHhhcCCceEEEEEec----------------C---------------------
Q psy5679 59 GRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVE----------------N--------------------- 101 (149)
Q Consensus 59 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~----------------~--------------------- 101 (149)
..+.+++.|..+.||+|+++.+.+.++.+.- ++++..+... .
T Consensus 116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~g-~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~~~~ 194 (251)
T PRK11657 116 DAPRIVYVFADPNCPYCKQFWQQARPWVDSG-KVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGLKPP 194 (251)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHhhcC-ceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCCCcc
Confidence 4567889999999999999999988776542 2444333310 0
Q ss_pred ---C---------chhhhHhcCCCcccEEEEEe-CCeeeeeeeCCCCHHHHHHHHH
Q psy5679 102 ---G---------GGEIAREFEVQAVPTVIGFR-NGDPVDTVVGNADQDVIQTLVS 144 (149)
Q Consensus 102 ---~---------~~~~~~~~~i~~~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i~ 144 (149)
. +..+.+++|++++|++++-. +|+. ....|..+.++|.+++.
T Consensus 195 ~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G~~-~~v~G~~~~~~L~~~l~ 249 (251)
T PRK11657 195 ASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDGTL-QQVVGLPDPAQLAEIMG 249 (251)
T ss_pred ccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCE-EEecCCCCHHHHHHHhC
Confidence 0 02355689999999998873 3533 46789888999988764
No 175
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=98.44 E-value=4.1e-06 Score=48.13 Aligned_cols=66 Identities=21% Similarity=0.491 Sum_probs=48.2
Q ss_pred EEEEeCCCChhHHhhhHHHHHHHhhcCCceEEEEEecCCch---hhhHhcCCCcccEEEEEeCCeeeeeeeCCCCHHHHH
Q psy5679 64 LAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGG---EIAREFEVQAVPTVIGFRNGDPVDTVVGNADQDVIQ 140 (149)
Q Consensus 64 vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~---~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~ 140 (149)
+++|..+||++|.+.+..|++. ++.+..+|+++. . .+....|...+|.+++ +|+.+ | ..++|.
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~-----~i~~~~~~v~~~-~~~~~~~~~~g~~~vP~ifi--~g~~i----g--g~~~l~ 68 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQEN-----GISYEEIPLGKD-ITGRSLRAVTGAMTVPQVFI--DGELI----G--GSDDLE 68 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-----CCCcEEEECCCC-hhHHHHHHHhCCCCcCeEEE--CCEEE----e--CHHHHH
Confidence 6789999999999999888863 466677777765 3 2334458899999865 78654 2 456676
Q ss_pred HHH
Q psy5679 141 TLV 143 (149)
Q Consensus 141 ~~i 143 (149)
+++
T Consensus 69 ~~l 71 (72)
T cd03029 69 KYF 71 (72)
T ss_pred HHh
Confidence 665
No 176
>PRK13189 peroxiredoxin; Provisional
Probab=98.43 E-value=3.6e-06 Score=59.01 Aligned_cols=88 Identities=17% Similarity=0.130 Sum_probs=62.7
Q ss_pred CCCCE-EEEEeCCCChhHHhhhHHHHHHHhhcCC--ceEEEEEecCC--------------------------chhhhHh
Q psy5679 59 GRNPV-LAYFFKPSCGFCKQLEPKISTVSETTSG--VEFVKINVENG--------------------------GGEIARE 109 (149)
Q Consensus 59 ~~~~~-vv~f~~~~C~~C~~~~~~l~~~~~~~~~--v~~~~vd~~~~--------------------------~~~~~~~ 109 (149)
.++.+ ++.|+++||+.|....+.|.++..++.+ +.++.+.+|.. +..+++.
T Consensus 34 ~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~~ 113 (222)
T PRK13189 34 KGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAKK 113 (222)
T ss_pred CCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHHH
Confidence 45544 4567899999999999999999988864 77877776532 1345677
Q ss_pred cCCC-------cccEEEEE-eCCeeeeeeeC----CCCHHHHHHHHHHH
Q psy5679 110 FEVQ-------AVPTVIGF-RNGDPVDTVVG----NADQDVIQTLVSKL 146 (149)
Q Consensus 110 ~~i~-------~~Pt~~~~-~~g~~~~~~~g----~~~~~~l~~~i~~~ 146 (149)
||+. .+|+.+++ ++|+......+ ..+.+++...|+.+
T Consensus 114 ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al 162 (222)
T PRK13189 114 LGMISPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLVKAL 162 (222)
T ss_pred hCCCccccCCCceeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 8865 46777777 68987654432 25677888877654
No 177
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=98.42 E-value=3.6e-06 Score=58.21 Aligned_cols=85 Identities=13% Similarity=0.099 Sum_probs=61.1
Q ss_pred CEEEEEeCCCChhHHhhhHHHHHHHhhcCC--ceEEEEEecCC--------------------------chhhhHhcCCC
Q psy5679 62 PVLAYFFKPSCGFCKQLEPKISTVSETTSG--VEFVKINVENG--------------------------GGEIAREFEVQ 113 (149)
Q Consensus 62 ~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~--v~~~~vd~~~~--------------------------~~~~~~~~~i~ 113 (149)
.+++.|+++||+.|....+.|.++.+++.+ +.++.|.+|.. +..+++.||+.
T Consensus 28 vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~yg~~ 107 (203)
T cd03016 28 GILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREVAKLLGMI 107 (203)
T ss_pred EEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHHHHHHcCCc
Confidence 345578999999999999999999998864 88888876632 13567788875
Q ss_pred ----ccc----EEEEE-eCCeeeeeeeC----CCCHHHHHHHHHHH
Q psy5679 114 ----AVP----TVIGF-RNGDPVDTVVG----NADQDVIQTLVSKL 146 (149)
Q Consensus 114 ----~~P----t~~~~-~~g~~~~~~~g----~~~~~~l~~~i~~~ 146 (149)
+.| +.+++ ++|+......+ ..+.+++...|+++
T Consensus 108 ~~~~~~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~~ell~~l~~l 153 (203)
T cd03016 108 DPDAGSTLTVRAVFIIDPDKKIRLILYYPATTGRNFDEILRVVDAL 153 (203)
T ss_pred cccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHH
Confidence 233 45555 78988765544 24677887777654
No 178
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.42 E-value=4e-06 Score=66.22 Aligned_cols=103 Identities=16% Similarity=0.151 Sum_probs=82.5
Q ss_pred EEEecchhhHHHHH-cCCCC-EEEEEeCCCChhHHhhhHHHHHHHhhcCCceEEEEEecCCchhhhHhcCCCcccEEEEE
Q psy5679 44 YLIIEKIDDFKQTI-RGRNP-VLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTVIGF 121 (149)
Q Consensus 44 v~~i~~~~~~~~~~-~~~~~-~vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~~i~~~Pt~~~~ 121 (149)
+.+-+..++++..+ .-.++ .++.|+.+.|..|..+...+++++...+.+.+...|..++ .+..++|++...|++.++
T Consensus 348 ~l~~~~~~~l~~~~~~l~~~v~l~~~~~~~~~~~~e~~~~l~e~~~~s~~i~~~~~~~~~~-~~~~~~~~v~~~P~~~i~ 426 (555)
T TIGR03143 348 LLDDSLRQQLVGIFGRLENPVTLLLFLDGSNEKSAELQSFLGEFASLSEKLNSEAVNRGEE-PESETLPKITKLPTVALL 426 (555)
T ss_pred ccCHHHHHHHHHHHHhcCCCEEEEEEECCCchhhHHHHHHHHHHHhcCCcEEEEEeccccc-hhhHhhcCCCcCCEEEEE
Confidence 33334455666666 44555 5678888899999999999999998876688888888888 899999999999999998
Q ss_pred e-CCeee-eeeeCCCCHHHHHHHHHHHh
Q psy5679 122 R-NGDPV-DTVVGNADQDVIQTLVSKLS 147 (149)
Q Consensus 122 ~-~g~~~-~~~~g~~~~~~l~~~i~~~~ 147 (149)
. +|+.. -+|.|-+.-.++..+|..++
T Consensus 427 ~~~~~~~~i~f~g~P~G~Ef~s~i~~i~ 454 (555)
T TIGR03143 427 DDDGNYTGLKFHGVPSGHELNSFILALY 454 (555)
T ss_pred eCCCcccceEEEecCccHhHHHHHHHHH
Confidence 4 66543 48889888999999998875
No 179
>KOG3170|consensus
Probab=98.41 E-value=4e-06 Score=56.80 Aligned_cols=99 Identities=15% Similarity=0.287 Sum_probs=79.2
Q ss_pred eEEEecchhhHHHHH--cCCCCEEEEEeCCCChhHHhhhHHHHHHHhhcCCceEEEEEecCCchhhhHhcCCCcccEEEE
Q psy5679 43 AYLIIEKIDDFKQTI--RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTVIG 120 (149)
Q Consensus 43 ~v~~i~~~~~~~~~~--~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~~i~~~Pt~~~ 120 (149)
.|.+|+..+..+++. +.+..|+|..|...-+.|.-+...+++++.+||+++|+++-.+.+ ...|--...||+++
T Consensus 92 ~V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~iKFVki~at~c----IpNYPe~nlPTl~V 167 (240)
T KOG3170|consen 92 EVFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQIKFVKIPATTC----IPNYPESNLPTLLV 167 (240)
T ss_pred ceeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCCcceEEecccccc----cCCCcccCCCeEEE
Confidence 488888855555555 567788888999999999999999999999999999999988777 45677789999999
Q ss_pred EeCCeeeeeeeC------C-CCHHHHHHHHHH
Q psy5679 121 FRNGDPVDTVVG------N-ADQDVIQTLVSK 145 (149)
Q Consensus 121 ~~~g~~~~~~~g------~-~~~~~l~~~i~~ 145 (149)
|..|.....+.| . .+.+++..++-+
T Consensus 168 Y~~G~lk~q~igll~lgG~n~t~ed~e~~L~q 199 (240)
T KOG3170|consen 168 YHHGALKKQMIGLLELGGMNLTMEDVEDFLVQ 199 (240)
T ss_pred eecchHHhheehhhhhcCCcCCHHHHHHHHHh
Confidence 988876554443 3 567788777654
No 180
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=98.41 E-value=3.8e-06 Score=58.26 Aligned_cols=39 Identities=23% Similarity=0.407 Sum_probs=31.9
Q ss_pred CCCEEEEEeCCCChhHHhhhHHH---HHHHhhcCC-ceEEEEE
Q psy5679 60 RNPVLAYFFKPSCGFCKQLEPKI---STVSETTSG-VEFVKIN 98 (149)
Q Consensus 60 ~~~~vv~f~~~~C~~C~~~~~~l---~~~~~~~~~-v~~~~vd 98 (149)
+++.||+|++..||+|..+.+.+ +.+.+.+++ +.++.++
T Consensus 37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~v~~~~~~ 79 (207)
T PRK10954 37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEGTKMTKYH 79 (207)
T ss_pred CCCeEEEEeCCCCccHHHhcccccchHHHHHhCCCCCeEEEec
Confidence 56779999999999999999876 788888875 6665544
No 181
>PRK13599 putative peroxiredoxin; Provisional
Probab=98.41 E-value=4.2e-06 Score=58.35 Aligned_cols=88 Identities=14% Similarity=0.099 Sum_probs=64.5
Q ss_pred CCCC-EEEEEeCCCChhHHhhhHHHHHHHhhcCC--ceEEEEEecCC--------------------------chhhhHh
Q psy5679 59 GRNP-VLAYFFKPSCGFCKQLEPKISTVSETTSG--VEFVKINVENG--------------------------GGEIARE 109 (149)
Q Consensus 59 ~~~~-~vv~f~~~~C~~C~~~~~~l~~~~~~~~~--v~~~~vd~~~~--------------------------~~~~~~~ 109 (149)
.++. +++.|+++||+.|....+.|.++..++.+ +.++.+++|.. +..+++.
T Consensus 27 ~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~ 106 (215)
T PRK13599 27 AGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQ 106 (215)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHHH
Confidence 3555 46788999999999999999999999853 88888887642 1346677
Q ss_pred cCCC-------cccEEEEE-eCCeeeeeeeC----CCCHHHHHHHHHHH
Q psy5679 110 FEVQ-------AVPTVIGF-RNGDPVDTVVG----NADQDVIQTLVSKL 146 (149)
Q Consensus 110 ~~i~-------~~Pt~~~~-~~g~~~~~~~g----~~~~~~l~~~i~~~ 146 (149)
||+. ..|+++++ ++|+....+.. ..+.+++...|+.+
T Consensus 107 yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~l 155 (215)
T PRK13599 107 LGMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKAL 155 (215)
T ss_pred cCCCccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHh
Confidence 8873 57988888 68987664321 15678888777654
No 182
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=98.39 E-value=5e-06 Score=59.44 Aligned_cols=88 Identities=14% Similarity=0.117 Sum_probs=65.1
Q ss_pred CCCCEEEEEe-CCCChhHHhhhHHHHHHHhhcCC--ceEEEEEecCC---------------------------chhhhH
Q psy5679 59 GRNPVLAYFF-KPSCGFCKQLEPKISTVSETTSG--VEFVKINVENG---------------------------GGEIAR 108 (149)
Q Consensus 59 ~~~~~vv~f~-~~~C~~C~~~~~~l~~~~~~~~~--v~~~~vd~~~~---------------------------~~~~~~ 108 (149)
.++.++++|| +.||+.|....+.|.+..+++.+ +.++.|.+|.. +..+++
T Consensus 97 kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iak 176 (261)
T PTZ00137 97 KDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVSK 176 (261)
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHHH
Confidence 4667777777 89999999999999999998864 77777776541 135677
Q ss_pred hcCCC-----cccEEEEE-eCCeeeeeee----CCCCHHHHHHHHHHH
Q psy5679 109 EFEVQ-----AVPTVIGF-RNGDPVDTVV----GNADQDVIQTLVSKL 146 (149)
Q Consensus 109 ~~~i~-----~~Pt~~~~-~~g~~~~~~~----g~~~~~~l~~~i~~~ 146 (149)
.||+. ..|+.+++ ++|+....+. ...+.+++...|+.+
T Consensus 177 ayGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~al 224 (261)
T PTZ00137 177 SFGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFDAV 224 (261)
T ss_pred HcCCCCcCCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 88885 47988888 5898876542 125677777776543
No 183
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=98.39 E-value=3.4e-06 Score=49.33 Aligned_cols=56 Identities=23% Similarity=0.495 Sum_probs=41.4
Q ss_pred EEEEeCCCChhHHhhhHHHHHHHhhcCCceEEEEEecCCchhh----hHhcCCCcccEEEEEeCCeee
Q psy5679 64 LAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEI----AREFEVQAVPTVIGFRNGDPV 127 (149)
Q Consensus 64 vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~----~~~~~i~~~Pt~~~~~~g~~~ 127 (149)
+++|+.+||++|...+..|++. ++.+-.+|++.. +.. .+..|...+|++++ +|+.+
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~-----~i~~~~~di~~~-~~~~~~~~~~~g~~~vP~i~i--~g~~i 60 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSK-----GVTFTEIRVDGD-PALRDEMMQRSGRRTVPQIFI--GDVHV 60 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHc-----CCCcEEEEecCC-HHHHHHHHHHhCCCCcCEEEE--CCEEE
Confidence 4678999999999999999865 355666677666 433 34457889999866 78654
No 184
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=98.38 E-value=2.8e-06 Score=48.20 Aligned_cols=57 Identities=25% Similarity=0.545 Sum_probs=43.1
Q ss_pred EEEEeCCCChhHHhhhHHHHHHHhhcCCceEEEEEecCCchh----hhHhcCCCcccEEEEEeCCeeee
Q psy5679 64 LAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGE----IAREFEVQAVPTVIGFRNGDPVD 128 (149)
Q Consensus 64 vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~----~~~~~~i~~~Pt~~~~~~g~~~~ 128 (149)
++.|+++||++|+.+...|.+.. +.+..+|++.+ ++ +.+..+...+|++++ +|+.+.
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~-----i~~~~~di~~~-~~~~~~l~~~~~~~~~P~~~~--~~~~ig 62 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG-----IEFEEIDILED-GELREELKELSGWPTVPQIFI--NGEFIG 62 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC-----CcEEEEECCCC-HHHHHHHHHHhCCCCcCEEEE--CCEEEe
Confidence 57899999999999999988774 56777888776 43 344457788998855 886653
No 185
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=98.35 E-value=7.6e-06 Score=51.19 Aligned_cols=93 Identities=13% Similarity=0.173 Sum_probs=68.0
Q ss_pred hhHHHHHcCCCCEEEEEe----CCCChhHHhhhHHHHHHHhhcC-C-ceEEEEEecCCchhhhHhcCCCc----ccEEEE
Q psy5679 51 DDFKQTIRGRNPVLAYFF----KPSCGFCKQLEPKISTVSETTS-G-VEFVKINVENGGGEIAREFEVQA----VPTVIG 120 (149)
Q Consensus 51 ~~~~~~~~~~~~~vv~f~----~~~C~~C~~~~~~l~~~~~~~~-~-v~~~~vd~~~~~~~~~~~~~i~~----~Pt~~~ 120 (149)
++..... .++.++.|+ +..-..-..+...+.++|+.++ + +.|+.+|.++. ....+.||+.. +|.+.+
T Consensus 7 en~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~gki~Fv~~D~~~~-~~~l~~fgl~~~~~~~P~~~i 83 (111)
T cd03073 7 DNRAQFT--KKPLVVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPDRKLNFAVADKEDF-SHELEEFGLDFSGGEKPVVAI 83 (111)
T ss_pred chHHHhc--cCCeEEEEEeccccCChhHHHHHHHHHHHHHHHCcCCeEEEEEEcHHHH-HHHHHHcCCCcccCCCCEEEE
Confidence 5555553 444455554 2233445778999999999999 6 99999999998 77889999984 999998
Q ss_pred EeCCeeeeeeeCCC-CHHHHHHHHHHH
Q psy5679 121 FRNGDPVDTVVGNA-DQDVIQTLVSKL 146 (149)
Q Consensus 121 ~~~g~~~~~~~g~~-~~~~l~~~i~~~ 146 (149)
...........+.. +.+.|.+|+++.
T Consensus 84 ~~~~~~KY~~~~~~~t~e~i~~F~~~f 110 (111)
T cd03073 84 RTAKGKKYVMEEEFSDVDALEEFLEDF 110 (111)
T ss_pred EeCCCCccCCCcccCCHHHHHHHHHHh
Confidence 85322222345567 889999999875
No 186
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=98.34 E-value=5.1e-06 Score=47.96 Aligned_cols=56 Identities=18% Similarity=0.467 Sum_probs=42.0
Q ss_pred EEEEeCCCChhHHhhhHHHHHHHhhcCCceEEEEEecCCchhh----hHhcCCC-cccEEEEEeCCeee
Q psy5679 64 LAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEI----AREFEVQ-AVPTVIGFRNGDPV 127 (149)
Q Consensus 64 vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~----~~~~~i~-~~Pt~~~~~~g~~~ 127 (149)
+++|+.++|++|...+..|++. ++.+..+|++.. ++. .+..+.. .+|++++ +|+.+
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~-----~i~~~~i~i~~~-~~~~~~~~~~~~~~~~vP~v~i--~g~~i 62 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK-----GVDYEEIDVDGD-PALREEMINRSGGRRTVPQIFI--GDVHI 62 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC-----CCcEEEEECCCC-HHHHHHHHHHhCCCCccCEEEE--CCEEE
Confidence 5789999999999999988764 466677777766 443 3345766 8999876 88654
No 187
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=98.32 E-value=7.1e-06 Score=55.13 Aligned_cols=37 Identities=24% Similarity=0.502 Sum_probs=32.3
Q ss_pred CCCCEEEEEeCCCChhHHhhhHHHHHHHhhcCC-ceEE
Q psy5679 59 GRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFV 95 (149)
Q Consensus 59 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~ 95 (149)
..+..++.|+...||+|..+.+.+.++.+++++ +.+.
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~v~~~ 51 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKDVKFE 51 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCCceEE
Confidence 578899999999999999999999999998876 5543
No 188
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=98.30 E-value=4e-06 Score=51.38 Aligned_cols=58 Identities=24% Similarity=0.386 Sum_probs=40.0
Q ss_pred EEEEeCCCChhHHhhhHHHHHHHhhcCCceEEEEEecCC--ch----hhhHhcCCCcccEEEEEeCCeeee
Q psy5679 64 LAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENG--GG----EIAREFEVQAVPTVIGFRNGDPVD 128 (149)
Q Consensus 64 vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~--~~----~~~~~~~i~~~Pt~~~~~~g~~~~ 128 (149)
++.|..+|||+|.+....|.+.. +.+..+|++.. +. .+.+..|...+|.+++ +|+.+.
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~~-----i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi--~g~~iG 73 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTLG-----VNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFV--GGKLVG 73 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC-----CCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEE--CCEEEc
Confidence 77899999999999999887763 33445555544 11 2333446789999865 886653
No 189
>PRK13191 putative peroxiredoxin; Provisional
Probab=98.29 E-value=1.9e-05 Score=55.07 Aligned_cols=88 Identities=14% Similarity=0.088 Sum_probs=63.1
Q ss_pred CCCCEEE-EEeCCCChhHHhhhHHHHHHHhhcCC--ceEEEEEecCC--------------------------chhhhHh
Q psy5679 59 GRNPVLA-YFFKPSCGFCKQLEPKISTVSETTSG--VEFVKINVENG--------------------------GGEIARE 109 (149)
Q Consensus 59 ~~~~~vv-~f~~~~C~~C~~~~~~l~~~~~~~~~--v~~~~vd~~~~--------------------------~~~~~~~ 109 (149)
.++.+++ .|+++||+.|....+.|.++..++.+ +.++.+++|.. +..+++.
T Consensus 32 ~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~~ 111 (215)
T PRK13191 32 KGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVAKR 111 (215)
T ss_pred CCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHHHH
Confidence 4565554 77899999999999999999999864 88888887633 1245567
Q ss_pred cCCC-------cccEEEEE-eCCeeeeeeeCC----CCHHHHHHHHHHH
Q psy5679 110 FEVQ-------AVPTVIGF-RNGDPVDTVVGN----ADQDVIQTLVSKL 146 (149)
Q Consensus 110 ~~i~-------~~Pt~~~~-~~g~~~~~~~g~----~~~~~l~~~i~~~ 146 (149)
||+. ..|+.+++ ++|+......+. .+.+++...|+.+
T Consensus 112 ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al 160 (215)
T PRK13191 112 LGMIHAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRAL 160 (215)
T ss_pred cCCcccccCCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 7763 36777777 688877644321 5778887777654
No 190
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=98.29 E-value=8e-06 Score=47.06 Aligned_cols=56 Identities=20% Similarity=0.355 Sum_probs=44.0
Q ss_pred EEEEeCCCChhHHhhhHHHHHHHhhcCCceEEEEEecCCch----hhhHhcCCCcccEEEEEeCCeee
Q psy5679 64 LAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGG----EIAREFEVQAVPTVIGFRNGDPV 127 (149)
Q Consensus 64 vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~----~~~~~~~i~~~Pt~~~~~~g~~~ 127 (149)
+++|+.++|++|++....|++. ++.+..+|+++. + ++.+..+-..+|.+++ +|+.+
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~-----gi~~~~~di~~~-~~~~~el~~~~g~~~vP~v~i--~~~~i 62 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREK-----GLPYVEINIDIF-PERKAELEERTGSSVVPQIFF--NEKLV 62 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHC-----CCceEEEECCCC-HHHHHHHHHHhCCCCcCEEEE--CCEEE
Confidence 6789999999999999988873 466777788776 4 3555667789999977 88655
No 191
>KOG3171|consensus
Probab=98.21 E-value=9.8e-06 Score=55.53 Aligned_cols=100 Identities=17% Similarity=0.361 Sum_probs=81.2
Q ss_pred EEEecchhhHHHHHc---CCCCEEEEEeCCCChhHHhhhHHHHHHHhhcCCceEEEEEecCCchhhhHhcCCCcccEEEE
Q psy5679 44 YLIIEKIDDFKQTIR---GRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTVIG 120 (149)
Q Consensus 44 v~~i~~~~~~~~~~~---~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~~i~~~Pt~~~ 120 (149)
|.++++-+.|.+.+. +.-.++|..|.+.-+-|..+-..+.=+|.+||.++|.++-...- ...++|....+|++++
T Consensus 140 V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP~vKFckikss~~--gas~~F~~n~lP~Lli 217 (273)
T KOG3171|consen 140 VYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYPIVKFCKIKSSNT--GASDRFSLNVLPTLLI 217 (273)
T ss_pred EEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccCCceeEEEeeeccc--cchhhhcccCCceEEE
Confidence 788888899999982 44567788999999999999999999999999999999987665 6788999999999999
Q ss_pred EeCCeeeeeee------C-CCCHHHHHHHHHH
Q psy5679 121 FRNGDPVDTVV------G-NADQDVIQTLVSK 145 (149)
Q Consensus 121 ~~~g~~~~~~~------g-~~~~~~l~~~i~~ 145 (149)
|++|+.+..+. | .....+|..|++.
T Consensus 218 YkgGeLIgNFv~va~qlgedffa~dle~FL~e 249 (273)
T KOG3171|consen 218 YKGGELIGNFVSVAEQLGEDFFAGDLESFLNE 249 (273)
T ss_pred eeCCchhHHHHHHHHHHhhhhhhhhHHHHHHH
Confidence 99999775332 2 1344556666654
No 192
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=98.21 E-value=1.2e-05 Score=55.38 Aligned_cols=87 Identities=15% Similarity=0.179 Sum_probs=61.8
Q ss_pred CCCCEEEEEeC-CCChhHHhhhHHHHHHHhhcCC--ceEEEEEecCC---------------------------chhhhH
Q psy5679 59 GRNPVLAYFFK-PSCGFCKQLEPKISTVSETTSG--VEFVKINVENG---------------------------GGEIAR 108 (149)
Q Consensus 59 ~~~~~vv~f~~-~~C~~C~~~~~~l~~~~~~~~~--v~~~~vd~~~~---------------------------~~~~~~ 108 (149)
.++.++|+||. .||+.|....+.+.++.+++.+ +.++.|++|.. ...+++
T Consensus 35 ~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ia~ 114 (199)
T PTZ00253 35 KGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSIAR 114 (199)
T ss_pred CCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhHHHH
Confidence 46789999995 7899999888999999999874 88888887633 124667
Q ss_pred hcCCC------cccEEEEE-eCCeeeeeeeCC----CCHHHHHHHHHH
Q psy5679 109 EFEVQ------AVPTVIGF-RNGDPVDTVVGN----ADQDVIQTLVSK 145 (149)
Q Consensus 109 ~~~i~------~~Pt~~~~-~~g~~~~~~~g~----~~~~~l~~~i~~ 145 (149)
.||+. .+|+.+++ ++|+......+. .+.+++...|+.
T Consensus 115 ~ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~~~r~~~e~l~~l~a 162 (199)
T PTZ00253 115 SYGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMPVGRNVEEVLRLLEA 162 (199)
T ss_pred HcCCcccCCCceEEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHh
Confidence 78875 35777777 688877655432 345555555543
No 193
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=2.5e-05 Score=45.91 Aligned_cols=56 Identities=23% Similarity=0.573 Sum_probs=41.7
Q ss_pred EEEEeCCCChhHHhhhHHHHHHHhhcCCceEEEEEecCCc----hhhhHhc-CCCcccEEEEEeCCee
Q psy5679 64 LAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGG----GEIAREF-EVQAVPTVIGFRNGDP 126 (149)
Q Consensus 64 vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~----~~~~~~~-~i~~~Pt~~~~~~g~~ 126 (149)
++.|.-++||+|.+....|.+. ++.+..++++... .+..++. |.+.+|.+++ +|+.
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~~-----g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i--~~~~ 63 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDRK-----GVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFI--GGKH 63 (80)
T ss_pred EEEEECCCCchHHHHHHHHHHc-----CCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEE--CCEE
Confidence 6778899999999999988844 4666666666551 2444555 7899999988 7764
No 194
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=98.11 E-value=4.1e-05 Score=46.73 Aligned_cols=68 Identities=29% Similarity=0.515 Sum_probs=45.2
Q ss_pred hhHHHHHcCCCCEEEEEe----CCCChhHHhhhHHHHHHHhhcCCceEEEEEecCCchh----hhHhcCCCcccEEEEEe
Q psy5679 51 DDFKQTIRGRNPVLAYFF----KPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGE----IAREFEVQAVPTVIGFR 122 (149)
Q Consensus 51 ~~~~~~~~~~~~~vv~f~----~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~----~~~~~~i~~~Pt~~~~~ 122 (149)
+.+++.+++ .+++|+-. .+|||+|......|.+. ++.+..+|++++ +. +.+..|-..+|.+++
T Consensus 3 ~~v~~~i~~-~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~-----~i~~~~~di~~~-~~~~~~l~~~tg~~tvP~vfi-- 73 (97)
T TIGR00365 3 ERIKEQIKE-NPVVLYMKGTPQFPQCGFSARAVQILKAC-----GVPFAYVNVLED-PEIRQGIKEYSNWPTIPQLYV-- 73 (97)
T ss_pred HHHHHHhcc-CCEEEEEccCCCCCCCchHHHHHHHHHHc-----CCCEEEEECCCC-HHHHHHHHHHhCCCCCCEEEE--
Confidence 344555544 34444332 28999999999988875 356677788766 43 344567789999976
Q ss_pred CCeee
Q psy5679 123 NGDPV 127 (149)
Q Consensus 123 ~g~~~ 127 (149)
+|+.+
T Consensus 74 ~g~~i 78 (97)
T TIGR00365 74 KGEFV 78 (97)
T ss_pred CCEEE
Confidence 88654
No 195
>PRK10638 glutaredoxin 3; Provisional
Probab=98.07 E-value=3.1e-05 Score=45.76 Aligned_cols=56 Identities=20% Similarity=0.522 Sum_probs=42.2
Q ss_pred EEEEeCCCChhHHhhhHHHHHHHhhcCCceEEEEEecCCch----hhhHhcCCCcccEEEEEeCCeee
Q psy5679 64 LAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGG----EIAREFEVQAVPTVIGFRNGDPV 127 (149)
Q Consensus 64 vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~----~~~~~~~i~~~Pt~~~~~~g~~~ 127 (149)
+++|..+||++|++....|++. ++.+..+|++.. + ++.+..+...+|++++ +|+.+
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~-----gi~y~~~dv~~~-~~~~~~l~~~~g~~~vP~i~~--~g~~i 63 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK-----GVSFQEIPIDGD-AAKREEMIKRSGRTTVPQIFI--DAQHI 63 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc-----CCCcEEEECCCC-HHHHHHHHHHhCCCCcCEEEE--CCEEE
Confidence 6688899999999999988875 455666777666 4 3445567889998866 78654
No 196
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=98.01 E-value=7.6e-05 Score=45.19 Aligned_cols=100 Identities=19% Similarity=0.279 Sum_probs=77.8
Q ss_pred EEEecchhhHHHHHcCCCCEEEEEeCCCChhHHhhhHHHHHHHhhcCC-ceEEEEEecCC-chhhhHhcCCC----cccE
Q psy5679 44 YLIIEKIDDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENG-GGEIAREFEVQ----AVPT 117 (149)
Q Consensus 44 v~~i~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~-~~~~~~~~~i~----~~Pt 117 (149)
+..|++..+|+.++.....|+|+|..+--..- .....+.++|+..++ -.++.|||... ...+|..+.+. --|.
T Consensus 3 ie~i~d~KdfKKLLRTr~NVLvLy~ks~k~a~-~~Lk~~~~~A~~vkG~gT~~~vdCgd~e~kKLCKKlKv~~~~kp~~~ 81 (112)
T cd03067 3 IEDISDHKDFKKLLRTRNNVLVLYSKSAKSAE-ALLKLLSDVAQAVKGQGTIAWIDCGDSESRKLCKKLKVDPSSKPKPV 81 (112)
T ss_pred cccccchHHHHHHHhhcCcEEEEEecchhhHH-HHHHHHHHHHHHhcCceeEEEEecCChHHHHHHHHHccCCCCCCCcc
Confidence 34677889999999888888888887644443 344588999999988 88899999762 27899999888 5554
Q ss_pred -EEEEeCCeeeeeeeCCCCHHHHHHHHH
Q psy5679 118 -VIGFRNGDPVDTVVGNADQDVIQTLVS 144 (149)
Q Consensus 118 -~~~~~~g~~~~~~~g~~~~~~l~~~i~ 144 (149)
+.=|+||.....|....+...+.+|++
T Consensus 82 ~LkHYKdG~fHkdYdR~~t~kSmv~Flr 109 (112)
T cd03067 82 ELKHYKDGDFHTEYNRQLTFKSMVAFLR 109 (112)
T ss_pred hhhcccCCCccccccchhhHHHHHHHhh
Confidence 344599999888888788888888875
No 197
>KOG2603|consensus
Probab=97.98 E-value=7.8e-05 Score=53.91 Aligned_cols=104 Identities=15% Similarity=0.360 Sum_probs=79.5
Q ss_pred cceeEEEecchhhHHHHH---cCCCCEEEEEeCC----CChhHHhhhHHHHHHHhhcCC---------ceEEEEEecCCc
Q psy5679 40 VQMAYLIIEKIDDFKQTI---RGRNPVLAYFFKP----SCGFCKQLEPKISTVSETTSG---------VEFVKINVENGG 103 (149)
Q Consensus 40 ~~~~v~~i~~~~~~~~~~---~~~~~~vv~f~~~----~C~~C~~~~~~l~~~~~~~~~---------v~~~~vd~~~~~ 103 (149)
....|+.+++ +.|...+ .++=..+|+|.+. .|.-|......+.-++..+.. +-|..||.++.
T Consensus 38 s~~~VI~~n~-d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~- 115 (331)
T KOG2603|consen 38 SESGVIRMND-DKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDES- 115 (331)
T ss_pred CCCCeEEecC-cchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEecccc-
Confidence 3345999997 9999998 4566678888864 599999999999888876541 66999999999
Q ss_pred hhhhHhcCCCcccEEEEEe--CCeee------eeeeCCCCHHHHHHHHHHH
Q psy5679 104 GEIAREFEVQAVPTVIGFR--NGDPV------DTVVGNADQDVIQTLVSKL 146 (149)
Q Consensus 104 ~~~~~~~~i~~~Pt~~~~~--~g~~~------~~~~g~~~~~~l~~~i~~~ 146 (149)
++..++++++.+|+++.|. .|+.. ..-.| ...|.+.+|++..
T Consensus 116 p~~Fq~l~ln~~P~l~~f~P~~~n~~~s~~~d~~~~g-~~Ae~iaqfv~~~ 165 (331)
T KOG2603|consen 116 PQVFQQLNLNNVPHLVLFSPAKGNKKRSDQMDQQDLG-FEAEQIAQFVADR 165 (331)
T ss_pred HHHHHHhcccCCCeEEEeCCCccccccCccchhhhcc-hhHHHHHHHHHHh
Confidence 9999999999999999993 23322 12223 3478888888764
No 198
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=3.4e-05 Score=61.14 Aligned_cols=79 Identities=14% Similarity=0.278 Sum_probs=64.8
Q ss_pred chhhHHHHHcCCCCEEEEEeCCCChhHHhhhHHH---HHHHhhcCC-ceEEEEEecCCchhhhHhcC--------CCccc
Q psy5679 49 KIDDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKI---STVSETTSG-VEFVKINVENGGGEIAREFE--------VQAVP 116 (149)
Q Consensus 49 ~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l---~~~~~~~~~-v~~~~vd~~~~~~~~~~~~~--------i~~~P 116 (149)
+.+.|..+...++|+++-...+||++|+.+...= +++|+.... +.-++||-++- |++-+.|. -.++|
T Consensus 32 ~~eAf~~A~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~FV~IKVDREER-PDvD~~Ym~~~q~~tG~GGWP 110 (667)
T COG1331 32 GEEAFAKAKEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNENFVPVKVDREER-PDVDSLYMNASQAITGQGGWP 110 (667)
T ss_pred CHHHHHHHHHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhCceeeeEChhhc-cCHHHHHHHHHHHhccCCCCc
Confidence 3588988889999999999999999999987643 466666654 88899999999 88887775 67999
Q ss_pred EEEEE-eCCeeee
Q psy5679 117 TVIGF-RNGDPVD 128 (149)
Q Consensus 117 t~~~~-~~g~~~~ 128 (149)
-.++. +||++..
T Consensus 111 LtVfLTPd~kPFf 123 (667)
T COG1331 111 LTVFLTPDGKPFF 123 (667)
T ss_pred eeEEECCCCceee
Confidence 77777 8998764
No 199
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=97.95 E-value=0.00017 Score=43.29 Aligned_cols=50 Identities=22% Similarity=0.489 Sum_probs=36.7
Q ss_pred CCChhHHhhhHHHHHHHhhcCCceEEEEEecCCchh----hhHhcCCCcccEEEEEeCCeee
Q psy5679 70 PSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGE----IAREFEVQAVPTVIGFRNGDPV 127 (149)
Q Consensus 70 ~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~----~~~~~~i~~~Pt~~~~~~g~~~ 127 (149)
+||++|......|.+.. +.|..+|++.. ++ +.+..|-..+|.+++ +|+.+
T Consensus 21 ~~Cp~C~~ak~~L~~~~-----i~y~~idv~~~-~~~~~~l~~~~g~~tvP~vfi--~g~~i 74 (90)
T cd03028 21 PRCGFSRKVVQILNQLG-----VDFGTFDILED-EEVRQGLKEYSNWPTFPQLYV--NGELV 74 (90)
T ss_pred CCCcHHHHHHHHHHHcC-----CCeEEEEcCCC-HHHHHHHHHHhCCCCCCEEEE--CCEEE
Confidence 79999999999888763 55666676665 43 444567889999855 88654
No 200
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=97.86 E-value=8.8e-05 Score=44.31 Aligned_cols=57 Identities=26% Similarity=0.488 Sum_probs=42.6
Q ss_pred EEEEeCCCChhHHhhhHHHHHHHhhcCC-ceEEEEEecCC-------------------------------chhhhHhcC
Q psy5679 64 LAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENG-------------------------------GGEIAREFE 111 (149)
Q Consensus 64 vv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~-------------------------------~~~~~~~~~ 111 (149)
+++|+.+.|++|..+.+.++++....++ +.+....+.-. .....+++|
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 80 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARALG 80 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcC
Confidence 4689999999999999999999765555 55555543211 023456789
Q ss_pred CCcccEEEE
Q psy5679 112 VQAVPTVIG 120 (149)
Q Consensus 112 i~~~Pt~~~ 120 (149)
+.++|++++
T Consensus 81 ~~g~Pt~v~ 89 (98)
T cd02972 81 VTGTPTFVV 89 (98)
T ss_pred CCCCCEEEE
Confidence 999999998
No 201
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=97.76 E-value=0.00028 Score=49.47 Aligned_cols=56 Identities=14% Similarity=0.250 Sum_probs=44.4
Q ss_pred EEEecchhh---HHHHHcCCCCEEEEEeCCCChhHHhhhHHHHHHHhhcCC-ceEEEEEec
Q psy5679 44 YLIIEKIDD---FKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVE 100 (149)
Q Consensus 44 v~~i~~~~~---~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~ 100 (149)
|.++++ +. +-+....++|.|+.|++-+||+=..-.+.+++++++|++ +.|+.|-+.
T Consensus 84 vv~l~g-~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~adFl~VYI~ 143 (237)
T PF00837_consen 84 VVTLDG-QRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVADFLIVYIE 143 (237)
T ss_pred eEeeCC-CcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhhheehhhHh
Confidence 777765 34 333337899999999999999999999999999999998 566655543
No 202
>PRK10824 glutaredoxin-4; Provisional
Probab=97.72 E-value=0.00031 Score=44.15 Aligned_cols=69 Identities=23% Similarity=0.482 Sum_probs=44.7
Q ss_pred hhHHHHHcCCCCEEEEEeC----CCChhHHhhhHHHHHHHhhcCCceEEEEEecCCchh----hhHhcCCCcccEEEEEe
Q psy5679 51 DDFKQTIRGRNPVLAYFFK----PSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGE----IAREFEVQAVPTVIGFR 122 (149)
Q Consensus 51 ~~~~~~~~~~~~~vv~f~~----~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~----~~~~~~i~~~Pt~~~~~ 122 (149)
+.+++.+.+ .+|+|+--+ ||||+|.+....|.++. +.+..+|++.. ++ +.+.-|-..+|.+++
T Consensus 6 ~~v~~~I~~-~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~-----i~~~~idi~~d-~~~~~~l~~~sg~~TVPQIFI-- 76 (115)
T PRK10824 6 EKIQRQIAE-NPILLYMKGSPKLPSCGFSAQAVQALSACG-----ERFAYVDILQN-PDIRAELPKYANWPTFPQLWV-- 76 (115)
T ss_pred HHHHHHHhc-CCEEEEECCCCCCCCCchHHHHHHHHHHcC-----CCceEEEecCC-HHHHHHHHHHhCCCCCCeEEE--
Confidence 455666644 444443333 69999999999988874 34445566655 43 334457788999988
Q ss_pred CCeeee
Q psy5679 123 NGDPVD 128 (149)
Q Consensus 123 ~g~~~~ 128 (149)
+|+.+.
T Consensus 77 ~G~~IG 82 (115)
T PRK10824 77 DGELVG 82 (115)
T ss_pred CCEEEc
Confidence 887664
No 203
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=97.70 E-value=0.0028 Score=39.93 Aligned_cols=97 Identities=13% Similarity=0.210 Sum_probs=65.2
Q ss_pred EEEecchhhHHHHHcCCCCEEEEEeCC--CChhHHhhhHHHHHHH----hhcCCceEEEEEec-----CCchhhhHhcCC
Q psy5679 44 YLIIEKIDDFKQTIRGRNPVLAYFFKP--SCGFCKQLEPKISTVS----ETTSGVEFVKINVE-----NGGGEIAREFEV 112 (149)
Q Consensus 44 v~~i~~~~~~~~~~~~~~~~vv~f~~~--~C~~C~~~~~~l~~~~----~~~~~v~~~~vd~~-----~~~~~~~~~~~i 112 (149)
...+++ -+|+.++.+-+.++|.|=.. +=... ..+.+++ ...+++-++.|-+. +| .+++++|++
T Consensus 6 ~v~LD~-~tFdKvi~kf~~~LVKFD~ayPyGeKh----d~F~~~A~e~~~~~~dLLvAeVGikDYGek~N-~~Laery~i 79 (126)
T PF07912_consen 6 CVPLDE-LTFDKVIPKFKYVLVKFDVAYPYGEKH----DAFKKLAKEASASSDDLLVAEVGIKDYGEKEN-MELAERYKI 79 (126)
T ss_dssp SEEEST-THHHHHGGGSSEEEEEEEESS--CHHH----HHHHHHHHHHHCC-SSEEEEEEECBSSSS-CC-HHHHHHTT-
T ss_pred eeeccc-eehhheeccCceEEEEEeccCCCcchH----HHHHHHHHHHhcCCCceEEEEeCcccccchhH-HHHHHHhCC
Confidence 345654 78999999999999999542 22222 2444444 34445888888875 44 799999999
Q ss_pred --CcccEEEEEeCC-eeeeee--eCCCCHHHHHHHHHHH
Q psy5679 113 --QAVPTVIGFRNG-DPVDTV--VGNADQDVIQTLVSKL 146 (149)
Q Consensus 113 --~~~Pt~~~~~~g-~~~~~~--~g~~~~~~l~~~i~~~ 146 (149)
..+|.+.+|..| +..-.+ .|..+.+.|..|+++.
T Consensus 80 ~ke~fPv~~LF~~~~~~pv~~p~~~~~t~~~l~~fvk~~ 118 (126)
T PF07912_consen 80 DKEDFPVIYLFVGDKEEPVRYPFDGDVTADNLQRFVKSN 118 (126)
T ss_dssp SCCC-SEEEEEESSTTSEEEE-TCS-S-HHHHHHHHHHT
T ss_pred CcccCCEEEEecCCCCCCccCCccCCccHHHHHHHHHhC
Confidence 468999999743 333355 7778999999999886
No 204
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=97.69 E-value=0.0015 Score=40.12 Aligned_cols=95 Identities=12% Similarity=0.124 Sum_probs=67.1
Q ss_pred EEEecchhhHHHHHc-CCCCEEEEEeCCCChhHHhhhHHHHHHHhhcCC-ceEEEEEecCCchhhhHhcCCCcccEEEEE
Q psy5679 44 YLIIEKIDDFKQTIR-GRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENGGGEIAREFEVQAVPTVIGF 121 (149)
Q Consensus 44 v~~i~~~~~~~~~~~-~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~~~~~~~~~~i~~~Pt~~~~ 121 (149)
+..+++.++++.++. .+..++|-|+..--. .....+.++|..+++ ..|+.. .. .++...+++. .|+++++
T Consensus 2 v~~i~~~~~~e~~~~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~---~~-~~~~~~~~~~-~~~i~l~ 73 (102)
T cd03066 2 VEIINSERELQAFENIEDDIKLIGYFKSEDS---EHYKAFEEAAEEFHPYIKFFAT---FD-SKVAKKLGLK-MNEVDFY 73 (102)
T ss_pred ceEcCCHHHHHHHhcccCCeEEEEEECCCCC---HHHHHHHHHHHhhhcCCEEEEE---Cc-HHHHHHcCCC-CCcEEEe
Confidence 567778888999997 777777777765433 345578888888855 777443 33 4567777765 6889998
Q ss_pred eC-Ceeeeee-eCCCCHHHHHHHHHHH
Q psy5679 122 RN-GDPVDTV-VGNADQDVIQTLVSKL 146 (149)
Q Consensus 122 ~~-g~~~~~~-~g~~~~~~l~~~i~~~ 146 (149)
++ ......+ .|..+.+.|.+||+..
T Consensus 74 ~~~~e~~~~y~~g~~~~~~l~~fi~~~ 100 (102)
T cd03066 74 EPFMEEPVTIPDKPYSEEELVDFVEEH 100 (102)
T ss_pred CCCCCCCcccCCCCCCHHHHHHHHHHh
Confidence 55 3332346 6778999999999865
No 205
>KOG1752|consensus
Probab=97.62 E-value=0.00035 Score=43.06 Aligned_cols=68 Identities=25% Similarity=0.488 Sum_probs=45.5
Q ss_pred hHHHHHcCCCCEEEEEeCCCChhHHhhhHHHHHHHhhcCC-ceEEEEEecCCchhhhH----hcCCCcccEEEEEeCCee
Q psy5679 52 DFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENGGGEIAR----EFEVQAVPTVIGFRNGDP 126 (149)
Q Consensus 52 ~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~~~~~~~----~~~i~~~Pt~~~~~~g~~ 126 (149)
.++.++ ...+ +|.|.-+||++|+.+...|.+ +.. ..++.+|-+..+.++.+ --+-+.+|.+++ +|+.
T Consensus 6 ~v~~~i-~~~~-VVifSKs~C~~c~~~k~ll~~----~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI--~Gk~ 77 (104)
T KOG1752|consen 6 KVRKMI-SENP-VVIFSKSSCPYCHRAKELLSD----LGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFI--GGKF 77 (104)
T ss_pred HHHHHh-hcCC-EEEEECCcCchHHHHHHHHHh----CCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEE--CCEE
Confidence 445555 3333 567999999999998888877 221 56666666655334433 335678999988 8877
Q ss_pred e
Q psy5679 127 V 127 (149)
Q Consensus 127 ~ 127 (149)
+
T Consensus 78 i 78 (104)
T KOG1752|consen 78 I 78 (104)
T ss_pred E
Confidence 6
No 206
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=97.52 E-value=0.00039 Score=53.14 Aligned_cols=57 Identities=16% Similarity=0.384 Sum_probs=42.5
Q ss_pred EEEEEeCCCChhHHhhhHHHHHHHhhcCCceEEEEEecCCchh---hhHh---------cCCCcccEEEEEeCCeee
Q psy5679 63 VLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGE---IARE---------FEVQAVPTVIGFRNGDPV 127 (149)
Q Consensus 63 ~vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~---~~~~---------~~i~~~Pt~~~~~~g~~~ 127 (149)
.|+.|..+|||+|.+....|.+. ++.+..+|+++. +. +.++ .|.+.+|++++ +|+.+
T Consensus 3 ~V~vys~~~Cp~C~~aK~~L~~~-----gi~~~~idi~~~-~~~~~~~~~~~~~~~~~~~g~~tvP~ifi--~~~~i 71 (410)
T PRK12759 3 EVRIYTKTNCPFCDLAKSWFGAN-----DIPFTQISLDDD-VKRAEFYAEVNKNILLVEEHIRTVPQIFV--GDVHI 71 (410)
T ss_pred cEEEEeCCCCHHHHHHHHHHHHC-----CCCeEEEECCCC-hhHHHHHHHHhhccccccCCCCccCeEEE--CCEEE
Confidence 37789999999999999888775 467777888766 42 2222 46789999977 77644
No 207
>PTZ00062 glutaredoxin; Provisional
Probab=97.46 E-value=0.0011 Score=45.96 Aligned_cols=67 Identities=18% Similarity=0.369 Sum_probs=43.6
Q ss_pred hHHHHHcCCCCEEEEEe----CCCChhHHhhhHHHHHHHhhcCCceEEEEEecCCchhhh----HhcCCCcccEEEEEeC
Q psy5679 52 DFKQTIRGRNPVLAYFF----KPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIA----REFEVQAVPTVIGFRN 123 (149)
Q Consensus 52 ~~~~~~~~~~~~vv~f~----~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~----~~~~i~~~Pt~~~~~~ 123 (149)
-+++++.+ .+++|+-- .|+|++|+++...|.+. ++.+..+|+++. .++. +..|-..+|.+.+ +
T Consensus 105 ~v~~li~~-~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~-----~i~y~~~DI~~d-~~~~~~l~~~sg~~TvPqVfI--~ 175 (204)
T PTZ00062 105 KIERLIRN-HKILLFMKGSKTFPFCRFSNAVVNMLNSS-----GVKYETYNIFED-PDLREELKVYSNWPTYPQLYV--N 175 (204)
T ss_pred HHHHHHhc-CCEEEEEccCCCCCCChhHHHHHHHHHHc-----CCCEEEEEcCCC-HHHHHHHHHHhCCCCCCeEEE--C
Confidence 34444444 44433332 27999999999888865 356677788766 4443 3446678899887 8
Q ss_pred Ceee
Q psy5679 124 GDPV 127 (149)
Q Consensus 124 g~~~ 127 (149)
|+.+
T Consensus 176 G~~I 179 (204)
T PTZ00062 176 GELI 179 (204)
T ss_pred CEEE
Confidence 8665
No 208
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=97.43 E-value=0.0021 Score=39.60 Aligned_cols=94 Identities=14% Similarity=0.250 Sum_probs=64.4
Q ss_pred EEEecchhhHHHHHcCCCCEEEEEeCCCChhHHhhhHHHHHHHhhcCC-ceEEEEEecCCchhhhHhcCCCcccEEEEEe
Q psy5679 44 YLIIEKIDDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENGGGEIAREFEVQAVPTVIGFR 122 (149)
Q Consensus 44 v~~i~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~~~~~~~~~~i~~~Pt~~~~~ 122 (149)
+.++++.+++++.+..++.++|-|+..--. .....+.++|..+++ ..|+... . .++...+++ .|++++|+
T Consensus 2 ~~~i~s~~~l~~f~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~---~-~~~~~~~~~--~~~ivl~~ 72 (104)
T cd03069 2 SVELRTEAEFEKFLSDDDASVVGFFEDEDS---KLLSEFLKAADTLRESFRFAHTS---D-KQLLEKYGY--GEGVVLFR 72 (104)
T ss_pred ccccCCHHHHHHHhccCCcEEEEEEcCCCc---hHHHHHHHHHHhhhhcCEEEEEC---h-HHHHHhcCC--CCceEEEe
Confidence 456677888999886677777777665433 355677888888865 7775533 2 456778888 67788872
Q ss_pred C-------CeeeeeeeCCCCHHHHHHHHHHH
Q psy5679 123 N-------GDPVDTVVGNADQDVIQTLVSKL 146 (149)
Q Consensus 123 ~-------g~~~~~~~g~~~~~~l~~~i~~~ 146 (149)
. ......+.|..+.+.|.+||+..
T Consensus 73 p~~~~~k~de~~~~y~g~~~~~~l~~fi~~~ 103 (104)
T cd03069 73 PPRLSNKFEDSSVKFDGDLDSSKIKKFIREN 103 (104)
T ss_pred chhhhcccCcccccccCcCCHHHHHHHHHhh
Confidence 1 11112478877889999999864
No 209
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=97.31 E-value=0.0032 Score=42.70 Aligned_cols=32 Identities=22% Similarity=0.607 Sum_probs=27.5
Q ss_pred EEEEEeCCCChhHHhhhHHHHHHHhhcCCceE
Q psy5679 63 VLAYFFKPSCGFCKQLEPKISTVSETTSGVEF 94 (149)
Q Consensus 63 ~vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~ 94 (149)
.|.+|+..-||+|....+.+.++.+.++++.+
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i 32 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDVEI 32 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTCEE
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCCcE
Confidence 36789999999999999999999999966433
No 210
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=97.30 E-value=0.01 Score=35.98 Aligned_cols=86 Identities=17% Similarity=0.121 Sum_probs=59.1
Q ss_pred hhhHHHHH-cCCCCEEEEEeCCCChhHHhhhHHHHHHHhhcCCceEEEEEecCCchhhhHhcCCCcccEEEEEeCCeee-
Q psy5679 50 IDDFKQTI-RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTVIGFRNGDPV- 127 (149)
Q Consensus 50 ~~~~~~~~-~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~- 127 (149)
.++++..+ .-.++|.+.++.+.-..|..++..+++++...+.+.+...+. . . ..|++.+..+|+..
T Consensus 7 ~~qL~~~f~~l~~pV~l~~f~~~~~~~~e~~~ll~e~a~lSdkI~~~~~~~--~--~--------~~P~~~i~~~~~~~g 74 (94)
T cd02974 7 KQQLKAYLERLENPVELVASLDDSEKSAELLELLEEIASLSDKITLEEDND--D--E--------RKPSFSINRPGEDTG 74 (94)
T ss_pred HHHHHHHHHhCCCCEEEEEEeCCCcchHHHHHHHHHHHHhCCceEEEEecC--C--C--------CCCEEEEecCCCccc
Confidence 34555555 445666554444334999999999999999987665533221 1 1 47999998776432
Q ss_pred eeeeCCCCHHHHHHHHHHHh
Q psy5679 128 DTVVGNADQDVIQTLVSKLS 147 (149)
Q Consensus 128 ~~~~g~~~~~~l~~~i~~~~ 147 (149)
-++.|-+.-.++..+|..++
T Consensus 75 IrF~GiP~GhEf~Slilai~ 94 (94)
T cd02974 75 IRFAGIPMGHEFTSLVLALL 94 (94)
T ss_pred EEEEecCCchhHHHHHHHhC
Confidence 38889888999999988753
No 211
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=97.27 E-value=0.0036 Score=42.06 Aligned_cols=66 Identities=17% Similarity=0.303 Sum_probs=52.7
Q ss_pred hhhHHHHHHHhhcCC-ceEEEEEecCCchhhhHhcCCCcccEEEEEeCC-eeeeeeeCC-CCHHHHHHHHHHHh
Q psy5679 77 QLEPKISTVSETTSG-VEFVKINVENGGGEIAREFEVQAVPTVIGFRNG-DPVDTVVGN-ADQDVIQTLVSKLS 147 (149)
Q Consensus 77 ~~~~~l~~~~~~~~~-v~~~~vd~~~~~~~~~~~~~i~~~Pt~~~~~~g-~~~~~~~g~-~~~~~l~~~i~~~~ 147 (149)
.....+.++|+.+.+ +.|+.+. + +++++.+++.. |++++|+++ +....+.|. .+.++|.+||....
T Consensus 7 ~~~~~f~~~A~~~~~~~~F~~~~---~-~~~~~~~~~~~-p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~~ 75 (184)
T PF13848_consen 7 ELFEIFEEAAEKLKGDYQFGVTF---N-EELAKKYGIKE-PTIVVYKKFDEKPVVYDGDKFTPEELKKFIKKNS 75 (184)
T ss_dssp HHHHHHHHHHHHHTTTSEEEEEE-----HHHHHHCTCSS-SEEEEEECTTTSEEEESSSTTSHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCcCCcEEEEEc---H-HHHHHHhCCCC-CcEEEeccCCCCceecccccCCHHHHHHHHHHhc
Confidence 345678899999986 8888876 4 67899999999 999999773 333577886 79999999998763
No 212
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=0.0033 Score=44.55 Aligned_cols=37 Identities=30% Similarity=0.499 Sum_probs=29.9
Q ss_pred hhHhcCCCcccEEEEEeCCeeeeeeeCCCCHHHHHHHHHHHh
Q psy5679 106 IAREFEVQAVPTVIGFRNGDPVDTVVGNADQDVIQTLVSKLS 147 (149)
Q Consensus 106 ~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~ 147 (149)
+.+++|+.++|++++ +|+ .+.|..+.+++...|...+
T Consensus 207 ~a~~~gv~gTPt~~v--~~~---~~~g~~~~~~l~~~i~~~~ 243 (244)
T COG1651 207 LAQQLGVNGTPTFIV--NGK---LVPGLPDLDELKAIIDEAL 243 (244)
T ss_pred HHHhcCCCcCCeEEE--CCe---eecCCCCHHHHHHHHHHhh
Confidence 446789999999988 665 6778788999999888764
No 213
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=97.18 E-value=0.0027 Score=42.94 Aligned_cols=31 Identities=29% Similarity=0.703 Sum_probs=24.1
Q ss_pred EEeCCCChhHHhhhHHHHHHHhhcCC-ceEEE
Q psy5679 66 YFFKPSCGFCKQLEPKISTVSETTSG-VEFVK 96 (149)
Q Consensus 66 ~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~ 96 (149)
+|..|.|++|-...|.+.++..+++. +.+-.
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~i~~~~ 33 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGNKIEFRF 33 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-TTEEEEE
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCCcEEEEE
Confidence 68899999999999999999999987 55433
No 214
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=97.09 E-value=0.0071 Score=39.69 Aligned_cols=56 Identities=14% Similarity=0.306 Sum_probs=40.7
Q ss_pred EEEEeCC------CChhHHhhhHHHHHHHhhcCCceEEEEEecCCch----hhhHhcCC----CcccEEEEEeCCeee
Q psy5679 64 LAYFFKP------SCGFCKQLEPKISTVSETTSGVEFVKINVENGGG----EIAREFEV----QAVPTVIGFRNGDPV 127 (149)
Q Consensus 64 vv~f~~~------~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~----~~~~~~~i----~~~Pt~~~~~~g~~~ 127 (149)
||+|+++ +|++|..++..|+.+ ++.|..+|+++. + ++.+.++- ..+|.+++ +|+.+
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~-----~V~~~e~DVs~~-~~~~~EL~~~~g~~~~~~tvPqVFI--~G~~I 71 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESF-----RVKFDERDVSMD-SGFREELRELLGAELKAVSLPRVFV--DGRYL 71 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHC-----CCcEEEEECCCC-HHHHHHHHHHhCCCCCCCCCCEEEE--CCEEE
Confidence 4566677 899999999888765 467778888766 4 34444454 68999877 78655
No 215
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=96.97 E-value=0.011 Score=39.17 Aligned_cols=88 Identities=18% Similarity=0.200 Sum_probs=61.6
Q ss_pred CCCCEEEEEeC-CCChhHHhhhHHHHHHHhhcCC--ceEEEEEecCC--------------------chhhhHhcCCCc-
Q psy5679 59 GRNPVLAYFFK-PSCGFCKQLEPKISTVSETTSG--VEFVKINVENG--------------------GGEIAREFEVQA- 114 (149)
Q Consensus 59 ~~~~~vv~f~~-~~C~~C~~~~~~l~~~~~~~~~--v~~~~vd~~~~--------------------~~~~~~~~~i~~- 114 (149)
.++++|++||- .++|-|-...-.|++...++.+ ..++.|..|.. +..+++.||+..
T Consensus 29 ~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F~~k~~L~f~LLSD~~~~v~~~ygv~~~ 108 (157)
T COG1225 29 RGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHKKFAEKHGLTFPLLSDEDGEVAEAYGVWGE 108 (157)
T ss_pred cCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCCceeeECCcHHHHHHhCcccc
Confidence 57799999994 6788898888888887777765 77888886533 256788888754
Q ss_pred -----------cc-EEEEEeCCeeeeeeeCC---CCHHHHHHHHHHH
Q psy5679 115 -----------VP-TVIGFRNGDPVDTVVGN---ADQDVIQTLVSKL 146 (149)
Q Consensus 115 -----------~P-t~~~~~~g~~~~~~~g~---~~~~~l~~~i~~~ 146 (149)
.+ |+++-++|+....+... ...+++.+.++++
T Consensus 109 k~~~gk~~~~~~R~TfvId~dG~I~~~~~~v~~~~h~~~vl~~l~~l 155 (157)
T COG1225 109 KKMYGKEYMGIERSTFVIDPDGKIRYVWRKVKVKGHADEVLAALKKL 155 (157)
T ss_pred cccCccccccccceEEEECCCCeEEEEecCCCCcccHHHHHHHHHHh
Confidence 23 44444789988766442 3456777776654
No 216
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=96.85 E-value=0.017 Score=45.48 Aligned_cols=87 Identities=15% Similarity=0.193 Sum_probs=63.7
Q ss_pred hhhHHHHH-cCCCCEEEEEeCCCChhHHhhhHHHHHHHhhcCCceEEEEEecCCchhhhHhcCCCcccEEEEEeCCeee-
Q psy5679 50 IDDFKQTI-RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTVIGFRNGDPV- 127 (149)
Q Consensus 50 ~~~~~~~~-~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~- 127 (149)
.++++..+ .-.+++.+.++.+.|..|..++..++++++..+.+.+...+.+. ...|++.+..+|+..
T Consensus 7 ~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s~ki~~~~~~~~~-----------~~~p~~~~~~~~~~~~ 75 (515)
T TIGR03140 7 LAQLKSYLASLENPVTLVLSAGSHEKSKELLELLDEIASLSDKISLTQNTADT-----------LRKPSFTILRDGADTG 75 (515)
T ss_pred HHHHHHHHHhcCCCEEEEEEeCCCchhHHHHHHHHHHHHhCCCeEEEEecCCc-----------CCCCeEEEecCCcccc
Confidence 35555555 45667766666557999999999999999998777664433211 345999888777643
Q ss_pred eeeeCCCCHHHHHHHHHHHh
Q psy5679 128 DTVVGNADQDVIQTLVSKLS 147 (149)
Q Consensus 128 ~~~~g~~~~~~l~~~i~~~~ 147 (149)
-+|.|-+.-.++..+|..++
T Consensus 76 i~f~g~P~g~Ef~s~i~~i~ 95 (515)
T TIGR03140 76 IRFAGIPGGHEFTSLVLAIL 95 (515)
T ss_pred eEEEecCCcHHHHHHHHHHH
Confidence 48889888999999998764
No 217
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=96.79 E-value=0.021 Score=44.98 Aligned_cols=86 Identities=13% Similarity=0.091 Sum_probs=63.8
Q ss_pred hhhHHHHH-cCCCCEEEEEeCCCChhHHhhhHHHHHHHhhcCCceEEEEEecCCchhhhHhcCCCcccEEEEEeCCeee-
Q psy5679 50 IDDFKQTI-RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTVIGFRNGDPV- 127 (149)
Q Consensus 50 ~~~~~~~~-~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~- 127 (149)
.++++..+ .-.+++-+.++.+.|..|..+...++++++..+.+.+.. ... . ...|++.+..+|+..
T Consensus 7 ~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~---~~~-~--------~~~p~~~~~~~~~~~~ 74 (517)
T PRK15317 7 KTQLKQYLELLERPIELVASLDDSEKSAELKELLEEIASLSDKITVEE---DSL-D--------VRKPSFSITRPGEDTG 74 (517)
T ss_pred HHHHHHHHHhCCCCEEEEEEeCCCchHHHHHHHHHHHHHhCCceEEEE---ccC-C--------CCCCEEEEEcCCccce
Confidence 35556666 457777666666689999999999999999987666533 112 1 347999988777554
Q ss_pred eeeeCCCCHHHHHHHHHHHh
Q psy5679 128 DTVVGNADQDVIQTLVSKLS 147 (149)
Q Consensus 128 ~~~~g~~~~~~l~~~i~~~~ 147 (149)
-+|.|-+.-.++..+|..++
T Consensus 75 i~f~g~P~g~Ef~s~i~~i~ 94 (517)
T PRK15317 75 VRFAGIPMGHEFTSLVLALL 94 (517)
T ss_pred EEEEecCccHHHHHHHHHHH
Confidence 48889888999999998875
No 218
>KOG2640|consensus
Probab=96.64 E-value=0.0011 Score=48.05 Aligned_cols=94 Identities=13% Similarity=0.267 Sum_probs=70.4
Q ss_pred hHHHHH--cCCCCEEEEEeCCCChhHHhhhHHHHHHHhhcCCceEEEEEe-cCCchhhhHhcCCCcccEEEEEeCCeeee
Q psy5679 52 DFKQTI--RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINV-ENGGGEIAREFEVQAVPTVIGFRNGDPVD 128 (149)
Q Consensus 52 ~~~~~~--~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~-~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~ 128 (149)
...+++ .+...+-+.||+.||+..+.+++.+.-....++.+....++- -.. +.+.++|++.+.|++++. +...-.
T Consensus 66 ~l~~~ih~n~~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~i~h~~vee~~~l-psv~s~~~~~~~ps~~~~-n~t~~~ 143 (319)
T KOG2640|consen 66 VLLDAIHGNKNDYVSLLFYASWCPFSRAVRPEFDVRSSLFSSIQHFAVEESQAL-PSVFSSYGIHSEPSNLML-NQTCPA 143 (319)
T ss_pred HHHHhhccccCCcccccchhcccCcccccCcccchhhhhccccccccHHHHhhc-ccchhccccccCCcceee-ccccch
Confidence 334444 347788899999999999999999988877787543333332 233 678899999999999886 333435
Q ss_pred eeeCCCCHHHHHHHHHHHh
Q psy5679 129 TVVGNADQDVIQTLVSKLS 147 (149)
Q Consensus 129 ~~~g~~~~~~l~~~i~~~~ 147 (149)
.+.|..+...+.++..+++
T Consensus 144 ~~~~~r~l~sLv~fy~~i~ 162 (319)
T KOG2640|consen 144 SYRGERDLASLVNFYTEIT 162 (319)
T ss_pred hhcccccHHHHHHHHHhhc
Confidence 7888889999999888765
No 219
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=96.64 E-value=0.064 Score=33.09 Aligned_cols=89 Identities=8% Similarity=0.057 Sum_probs=67.2
Q ss_pred cCCCCEEEEEeCCCChhHHhhhHHHHHHHhhcCC---ceEEEEEecCCchhhhH----hcCCC-cccEEEEE--eCCeee
Q psy5679 58 RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG---VEFVKINVENGGGEIAR----EFEVQ-AVPTVIGF--RNGDPV 127 (149)
Q Consensus 58 ~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~---v~~~~vd~~~~~~~~~~----~~~i~-~~Pt~~~~--~~g~~~ 127 (149)
..++..++-|-.+..+.-.++.+.++++|+.+.. +.|+.||-|.. |-+.. .|+|. .-|.+-+. .+..-+
T Consensus 18 d~~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~F-Pllv~yWektF~IDl~~PqIGVV~vtdadSv 96 (120)
T cd03074 18 DLDGIHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDF-PLLVPYWEKTFGIDLFRPQIGVVNVTDADSV 96 (120)
T ss_pred ccCCceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccC-chhhHHHHhhcCcccCCCceeeEecccccce
Confidence 4578889999999999999999999999999875 99999999998 76554 44554 35877666 233322
Q ss_pred e-eee---CCCCHHHHHHHHHHHh
Q psy5679 128 D-TVV---GNADQDVIQTLVSKLS 147 (149)
Q Consensus 128 ~-~~~---g~~~~~~l~~~i~~~~ 147 (149)
. ... ...+.++|.+||+.++
T Consensus 97 W~~m~~~~d~~t~~~Le~WiedVL 120 (120)
T cd03074 97 WMEMDDDEDLPTAEELEDWIEDVL 120 (120)
T ss_pred eEecccccccCcHHHHHHHHHhhC
Confidence 2 222 2368999999998764
No 220
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=96.49 E-value=0.075 Score=36.78 Aligned_cols=79 Identities=22% Similarity=0.390 Sum_probs=52.9
Q ss_pred EEEEEeCCCChhHHhhhHHHHHHHhhcCCceEEEEEecCC-----------------chhhhHhcCCC--cccEEEEEeC
Q psy5679 63 VLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENG-----------------GGEIAREFEVQ--AVPTVIGFRN 123 (149)
Q Consensus 63 ~vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~-----------------~~~~~~~~~i~--~~Pt~~~~~~ 123 (149)
+|=+|.+..|..|......|.+++.+- ++..+..++|-- ....++.++.. .+|.+++ |
T Consensus 1 vVELFTSQGCsSCPpAD~~L~~l~~~~-~Vi~LafHVDYWDylGWkD~fa~~~~t~RQr~Y~~~~~~~~vYTPQ~vV--n 77 (202)
T PF06764_consen 1 VVELFTSQGCSSCPPADRLLSELAARP-DVIALAFHVDYWDYLGWKDPFASPEFTQRQRAYARRFGLRSVYTPQVVV--N 77 (202)
T ss_dssp EEEEEE-TT-TT-HHHHHHHHHHHHHT-SSEEEEEE-STT-SSSS--TT--HHHHHHHHHHHHHTT-S---SSEEEE--T
T ss_pred CeeEecCCCCCCCcHHHHHHHHhhcCC-CEEEEEecCCcccCCCCCCccCChhHHHHHHHHHHHhCCCCCcCCeEEE--C
Confidence 355788999999999999999999994 766666666522 13445556555 4888888 9
Q ss_pred CeeeeeeeCCCCHHHHHHHHHHHh
Q psy5679 124 GDPVDTVVGNADQDVIQTLVSKLS 147 (149)
Q Consensus 124 g~~~~~~~g~~~~~~l~~~i~~~~ 147 (149)
|+. ...| .+...+...|....
T Consensus 78 G~~--~~~g-~~~~~~~~ai~~~~ 98 (202)
T PF06764_consen 78 GRE--HRVG-SDRAAVEAAIQAAR 98 (202)
T ss_dssp TTE--EEET-T-HHHHHHHHHHHH
T ss_pred Cee--eeec-cCHHHHHHHHHHhh
Confidence 977 4566 68888888888764
No 221
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=96.43 E-value=0.045 Score=35.30 Aligned_cols=73 Identities=19% Similarity=0.426 Sum_probs=54.6
Q ss_pred CEEEEEeCCCChhHHhhhHHHHHHHhhcCCceEEEEEecCCchhhhHhcCCC----cccEEEEEeCCeeeeeeeCCCCHH
Q psy5679 62 PVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQ----AVPTVIGFRNGDPVDTVVGNADQD 137 (149)
Q Consensus 62 ~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~~i~----~~Pt~~~~~~g~~~~~~~g~~~~~ 137 (149)
.-++.|++|.|+=|..+...++. .++.+-.+..++. ..+.+++||. +-=|.++ +|+ ..+|....+
T Consensus 26 ~~~~vyksPnCGCC~~w~~~mk~-----~Gf~Vk~~~~~d~-~alK~~~gIp~e~~SCHT~VI--~Gy---~vEGHVPa~ 94 (149)
T COG3019 26 TEMVVYKSPNCGCCDEWAQHMKA-----NGFEVKVVETDDF-LALKRRLGIPYEMQSCHTAVI--NGY---YVEGHVPAE 94 (149)
T ss_pred eeEEEEeCCCCccHHHHHHHHHh-----CCcEEEEeecCcH-HHHHHhcCCChhhccccEEEE--cCE---EEeccCCHH
Confidence 34778999999999999887762 2467777777777 7888888875 4446666 884 467878888
Q ss_pred HHHHHHHH
Q psy5679 138 VIQTLVSK 145 (149)
Q Consensus 138 ~l~~~i~~ 145 (149)
.+..++++
T Consensus 95 aI~~ll~~ 102 (149)
T COG3019 95 AIARLLAE 102 (149)
T ss_pred HHHHHHhC
Confidence 88888764
No 222
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=96.31 E-value=0.027 Score=31.84 Aligned_cols=58 Identities=17% Similarity=0.252 Sum_probs=38.5
Q ss_pred EEEeCCCChhHHhhhHHHHHHHhhcCCceEEEEEecCCchhhhHhcCCCcccEEEEEeCCee
Q psy5679 65 AYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTVIGFRNGDP 126 (149)
Q Consensus 65 v~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~~i~~~Pt~~~~~~g~~ 126 (149)
++|+.++|++|.+..-.+++..-. +.+..+|.....+++.+......+|++.. .+|..
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl~---~e~~~v~~~~~~~~~~~~np~~~vP~L~~-~~g~~ 59 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGIT---VELREVELKNKPAEMLAASPKGTVPVLVL-GNGTV 59 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCCC---cEEEEeCCCCCCHHHHHHCCCCCCCEEEE-CCCcE
Confidence 467889999999998777766433 45555555433145655566779999965 23654
No 223
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.18 E-value=0.016 Score=33.19 Aligned_cols=57 Identities=11% Similarity=0.188 Sum_probs=38.4
Q ss_pred EEEeCCCChhHHhhhHHHHHHHhhcCCceEEEEEecCCch---------------hhhHhcCCCcccEEEEEeCCeee
Q psy5679 65 AYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGG---------------EIAREFEVQAVPTVIGFRNGDPV 127 (149)
Q Consensus 65 v~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~---------------~~~~~~~i~~~Pt~~~~~~g~~~ 127 (149)
++|++..||.|..+...++++.-.| -.|++....+ +-++..|--++|.+++ .||+.+
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~v~y-----d~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~-~d~~vV 76 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLNVDY-----DFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLT-DDGKVV 76 (85)
T ss_pred eeeccccCcchHHHHHHHHHcCCCc-----eeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEe-CCCcEE
Confidence 6899999999999888888774444 4444443311 2234566778999865 467664
No 224
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=96.10 E-value=0.16 Score=31.40 Aligned_cols=94 Identities=7% Similarity=0.141 Sum_probs=59.3
Q ss_pred EEEecchhhHHHHHcCC-CCEEEEEeCCCChhHHhhhHHHHHHHhhcCC-ceEEEEEecCCchhhhHhcCCCcccEEEEE
Q psy5679 44 YLIIEKIDDFKQTIRGR-NPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENGGGEIAREFEVQAVPTVIGF 121 (149)
Q Consensus 44 v~~i~~~~~~~~~~~~~-~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~~~~~~~~~~i~~~Pt~~~~ 121 (149)
+..+++.++++..+... ..++|-|+..--. .....+.++|..+++ ..|+... . ..+...+++. .|.+++|
T Consensus 2 v~~i~s~~ele~f~~~~~~~~VVG~F~~~~~---~~~~~F~~vA~~~Rdd~~F~~t~---~-~~~~~~~~~~-~~~vvl~ 73 (107)
T cd03068 2 SKQLQTLKQVQEFLRDGDDVIIIGVFSGEED---PAYQLYQDAANSLREDYKFHHTF---D-SEIFKSLKVS-PGQLVVF 73 (107)
T ss_pred ceEcCCHHHHHHHHhcCCCEEEEEEECCCCC---HHHHHHHHHHHhcccCCEEEEEC---h-HHHHHhcCCC-CCceEEE
Confidence 56778888999988544 6666666655333 345678889999865 7775433 3 4567778876 4566666
Q ss_pred eCCe-------eeeeeeCC-CCHHH-HHHHHHH
Q psy5679 122 RNGD-------PVDTVVGN-ADQDV-IQTLVSK 145 (149)
Q Consensus 122 ~~g~-------~~~~~~g~-~~~~~-l~~~i~~ 145 (149)
+.-+ ....|.|. .+.++ |..||++
T Consensus 74 rp~~~~~k~e~~~~~~~~~~~~~~~~~~~f~~~ 106 (107)
T cd03068 74 QPEKFQSKYEPKSHVLNKKDSTSEDELKDFFKE 106 (107)
T ss_pred CcHHHhhhcCcceeeeeccccchHHHHHHHHhc
Confidence 3211 11245654 35545 9999875
No 225
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.03 E-value=0.043 Score=41.19 Aligned_cols=81 Identities=17% Similarity=0.237 Sum_probs=65.9
Q ss_pred CCCCEEEEEeCCCChhHHhhhHHHHHHHhhcCCceEEEEEecCCchhhhHhcCCCcccEEEEEeCCeeeeeeeCCCCHHH
Q psy5679 59 GRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTVIGFRNGDPVDTVVGNADQDV 138 (149)
Q Consensus 59 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~ 138 (149)
.+...+=-|++-.|..|.++...|.-++-.+|.+.-..+|--.. .+-.+.-+|-.+|++++ ||+. .-.|.++.++
T Consensus 115 ~g~~~FETy~SltC~nCPDVVQALN~msvlNp~I~H~~IdGa~F-q~Evear~IMaVPtvfl--nGe~--fg~GRmtlee 189 (520)
T COG3634 115 DGDFHFETYFSLTCHNCPDVVQALNLMSVLNPRIKHTAIDGALF-QDEVEARNIMAVPTVFL--NGEE--FGQGRMTLEE 189 (520)
T ss_pred CCceeEEEEEEeeccCChHHHHHHHHHHhcCCCceeEEecchhh-HhHHHhccceecceEEE--cchh--hcccceeHHH
Confidence 56666777888899999999999999999999999999998877 66677779999999988 8876 3456567777
Q ss_pred HHHHHH
Q psy5679 139 IQTLVS 144 (149)
Q Consensus 139 l~~~i~ 144 (149)
+...|.
T Consensus 190 ilaki~ 195 (520)
T COG3634 190 ILAKID 195 (520)
T ss_pred HHHHhc
Confidence 766554
No 226
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=95.98 E-value=0.064 Score=30.70 Aligned_cols=73 Identities=19% Similarity=0.297 Sum_probs=42.9
Q ss_pred EEEEeCCCChhHHhhhHHHHHHHhhcCCceEEEEEecCCchhhhHhcCCCcccEEEEEe--CCeeeeeeeCCCCHHHHHH
Q psy5679 64 LAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTVIGFR--NGDPVDTVVGNADQDVIQT 141 (149)
Q Consensus 64 vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~~i~~~Pt~~~~~--~g~~~~~~~g~~~~~~l~~ 141 (149)
+.+|+.+.|++|++.+-.+.+..-.| .+..+|.... .++ +.-+...+|++..-. +|+.+ ..-..+.+
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~~gi~y---~~~~~~~~~~-~~~-~~~~~~~vP~l~~~~~~~~~~l------~eS~~I~~ 70 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDYHGIPY---EVVEVNPVSR-KEI-KWSSYKKVPILRVESGGDGQQL------VDSSVIIS 70 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHHCCCce---EEEECCchhH-HHH-HHhCCCccCEEEECCCCCccEE------EcHHHHHH
Confidence 45788899999999997776663333 2333333222 333 334567899997632 24332 24455666
Q ss_pred HHHHHh
Q psy5679 142 LVSKLS 147 (149)
Q Consensus 142 ~i~~~~ 147 (149)
+|.+.+
T Consensus 71 yL~~~~ 76 (77)
T cd03040 71 TLKTYL 76 (77)
T ss_pred HHHHHc
Confidence 666654
No 227
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=95.71 E-value=0.18 Score=28.79 Aligned_cols=71 Identities=14% Similarity=0.243 Sum_probs=47.1
Q ss_pred EEeCCCChhHHhhhHHHHHHHhhcCCceEEEEEecCCchhhhHhcCCCcccEEEEEeCCeeeeeeeCCCCHHHHHHHHHH
Q psy5679 66 YFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTVIGFRNGDPVDTVVGNADQDVIQTLVSK 145 (149)
Q Consensus 66 ~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~ 145 (149)
+|+.++|++|+++.-.++...-. +.+..++..+....+.+...-..+|++. .+|..+ .+-..+.++|.+
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i~---~~~~~v~~~~~~~~~~~~~p~~~vPvL~--~~g~~l------~dS~~I~~yL~~ 69 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGIP---YELVPVDPEEKRPEFLKLNPKGKVPVLV--DDGEVL------TDSAAIIEYLEE 69 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTEE---EEEEEEBTTSTSHHHHHHSTTSBSSEEE--ETTEEE------ESHHHHHHHHHH
T ss_pred CCCcCCChHHHHHHHHHHHcCCe---EEEeccCcccchhHHHhhcccccceEEE--ECCEEE------eCHHHHHHHHHH
Confidence 47789999999997666555332 4455555444325566666778999997 467754 255667777776
Q ss_pred Hh
Q psy5679 146 LS 147 (149)
Q Consensus 146 ~~ 147 (149)
..
T Consensus 70 ~~ 71 (75)
T PF13417_consen 70 RY 71 (75)
T ss_dssp HS
T ss_pred Hc
Confidence 54
No 228
>PF06491 Disulph_isomer: Disulphide isomerase; InterPro: IPR009474 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 3FHK_F.
Probab=95.67 E-value=0.054 Score=34.54 Aligned_cols=100 Identities=15% Similarity=0.298 Sum_probs=54.0
Q ss_pred EEEecchhhHHHHHc-CCCCEEEEEeCCCChhH-HhhhHHHHHHHh--hcCC---ceEEEEEecCCchhhhHhcC---CC
Q psy5679 44 YLIIEKIDDFKQTIR-GRNPVLAYFFKPSCGFC-KQLEPKISTVSE--TTSG---VEFVKINVENGGGEIAREFE---VQ 113 (149)
Q Consensus 44 v~~i~~~~~~~~~~~-~~~~~vv~f~~~~C~~C-~~~~~~l~~~~~--~~~~---v~~~~vd~~~~~~~~~~~~~---i~ 113 (149)
+.++.+.+++++.+. .++..+|+. .+-|+=- -..+|-...... .-|+ ..|+..|-+.- +-++.|= -.
T Consensus 18 f~eL~T~e~Vd~~~~~~~GTtlVvV-NSVCGCAag~ARPa~~~al~~~kkPD~lvTVFAGqDkEAt--~~aR~yf~~~pP 94 (136)
T PF06491_consen 18 FEELTTAEEVDEALKNKEGTTLVVV-NSVCGCAAGNARPAAAMALQNDKKPDHLVTVFAGQDKEAT--AKAREYFEPYPP 94 (136)
T ss_dssp -EE--SHHHHHHHHHH--SEEEEEE-E-SSHHHHHTHHHHHHHHHHHSS--SEEEEEETTTSHHHH--HHHHHTSTTS--
T ss_pred ccccCCHHHHHHHHhCCCCcEEEEE-eccccccccccCHHHHHHHhCCCCCCceEEeccCCCHHHH--HHHHHhcCCCCC
Confidence 678888999999995 666666655 5557522 234444433322 3344 33444444333 2233332 24
Q ss_pred cccEEEEEeCCeeeee-----eeCCCCHHHHHHHHHHHh
Q psy5679 114 AVPTVIGFRNGDPVDT-----VVGNADQDVIQTLVSKLS 147 (149)
Q Consensus 114 ~~Pt~~~~~~g~~~~~-----~~g~~~~~~l~~~i~~~~ 147 (149)
+-|++.+||||+.++. +.| .+.+.|.+-|....
T Consensus 95 SSPS~ALfKdGelvh~ieRh~IEG-r~a~~Ia~~L~~af 132 (136)
T PF06491_consen 95 SSPSIALFKDGELVHFIERHHIEG-RPAEEIAENLQDAF 132 (136)
T ss_dssp -SSEEEEEETTEEEEEE-GGGTTT-S-HHHHHHHHHHHH
T ss_pred CCchheeeeCCEEEEEeehhhcCC-CCHHHHHHHHHHHH
Confidence 7889999999998863 335 67888887777654
No 229
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=95.61 E-value=0.063 Score=30.76 Aligned_cols=58 Identities=21% Similarity=0.264 Sum_probs=48.8
Q ss_pred EEEEEeCCCChhHHhhhHHHHHHHhhcCC--ceEEEEEecCCchhhhHhcCCCcccEEEEE
Q psy5679 63 VLAYFFKPSCGFCKQLEPKISTVSETTSG--VEFVKINVENGGGEIAREFEVQAVPTVIGF 121 (149)
Q Consensus 63 ~vv~f~~~~C~~C~~~~~~l~~~~~~~~~--v~~~~vd~~~~~~~~~~~~~i~~~Pt~~~~ 121 (149)
.+.+|-+...+.+......+.++.+.+.+ ..+-.+|+.++ +.+++.++|-.+||++-.
T Consensus 3 ~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~~-P~lAe~~~ivAtPtLvk~ 62 (72)
T cd02978 3 VLRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLKQ-PQLAEEDKIVATPTLVKV 62 (72)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEcccC-HhHHhhCCEEEechhhhc
Confidence 45566677778888888899988888754 88899999999 999999999999998754
No 230
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=95.56 E-value=0.15 Score=28.59 Aligned_cols=52 Identities=13% Similarity=0.282 Sum_probs=34.3
Q ss_pred EEEeCCCChhHHhhhHHHHHHHhhcCCceEEEEEecCCchhhhHhcCCCcccEEE
Q psy5679 65 AYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTVI 119 (149)
Q Consensus 65 v~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~~i~~~Pt~~ 119 (149)
.+|+.++|+.|++..-.+++..-.+ ....+|.....+++.+......+|++.
T Consensus 2 ~ly~~~~~~~~~~v~~~l~~~gi~~---~~~~v~~~~~~~~~~~~~p~~~vP~l~ 53 (73)
T cd03059 2 TLYSGPDDVYSHRVRIVLAEKGVSV---EIIDVDPDNPPEDLAELNPYGTVPTLV 53 (73)
T ss_pred EEEECCCChhHHHHHHHHHHcCCcc---EEEEcCCCCCCHHHHhhCCCCCCCEEE
Confidence 5678899999999988776664433 344445443314555555667899775
No 231
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=95.46 E-value=0.23 Score=28.48 Aligned_cols=71 Identities=13% Similarity=0.192 Sum_probs=40.8
Q ss_pred EEEEeCCCChhHHhhhHHHHHHHhhcCCceEEEEEecCC---chhhhHhcCCCcccEEEEEeCCeeeeeeeCCCCHHHHH
Q psy5679 64 LAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENG---GGEIAREFEVQAVPTVIGFRNGDPVDTVVGNADQDVIQ 140 (149)
Q Consensus 64 vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~---~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~ 140 (149)
+.+|+.++|++|.+++-.+++..-. +-.++++.. .+++...-+...+|+++.-.+|..+ ..-..|.
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~gi~-----y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~~~~~~~l------~es~~I~ 70 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTELELD-----VILYPCPKGSPKRDKFLEKGGKVQVPYLVDPNTGVQM------FESADIV 70 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHcCCc-----EEEEECCCChHHHHHHHHhCCCCcccEEEeCCCCeEE------EcHHHHH
Confidence 3567788999999998777776433 333444332 1344444456789998542234322 2344566
Q ss_pred HHHHH
Q psy5679 141 TLVSK 145 (149)
Q Consensus 141 ~~i~~ 145 (149)
.+|.+
T Consensus 71 ~yL~~ 75 (77)
T cd03041 71 KYLFK 75 (77)
T ss_pred HHHHH
Confidence 65554
No 232
>KOG2507|consensus
Probab=95.38 E-value=0.25 Score=37.75 Aligned_cols=90 Identities=13% Similarity=0.252 Sum_probs=62.3
Q ss_pred cCCCCEEEEEeCCCChhHHhhhHH--HHHHHhh-cCC-ceEEEEEecCCc-hhhhHhcCCCcccEEEEE-eCCeeeeeee
Q psy5679 58 RGRNPVLAYFFKPSCGFCKQLEPK--ISTVSET-TSG-VEFVKINVENGG-GEIAREFEVQAVPTVIGF-RNGDPVDTVV 131 (149)
Q Consensus 58 ~~~~~~vv~f~~~~C~~C~~~~~~--l~~~~~~-~~~-v~~~~vd~~~~~-~~~~~~~~i~~~Pt~~~~-~~g~~~~~~~ 131 (149)
..++.++|.|-+-......++... ....... ... +..++|+..... ..+..-|-+-.+|+++++ ..|.++....
T Consensus 16 K~kkalfVVyI~gddE~s~kl~r~~w~d~~vs~~ls~~fVaIkiqags~aa~qFs~IYp~v~vPs~ffIg~sGtpLevit 95 (506)
T KOG2507|consen 16 KGKKALFVVYISGDDEESDKLNRLTWTDASVSDSLSKYFVAIKIQAGSVAATQFSAIYPYVSVPSIFFIGFSGTPLEVIT 95 (506)
T ss_pred hcCCeEEEEEEecCchHhhHHhhccchhhhhhhhhhcceEEEEeccCchhhhhhhhhcccccccceeeecCCCceeEEee
Confidence 567888888888878887777632 1222111 111 445555543320 345667788899999999 7899999999
Q ss_pred CCCCHHHHHHHHHHHh
Q psy5679 132 GNADQDVIQTLVSKLS 147 (149)
Q Consensus 132 g~~~~~~l~~~i~~~~ 147 (149)
|....++|..-|.+..
T Consensus 96 g~v~adeL~~~i~Kv~ 111 (506)
T KOG2507|consen 96 GFVTADELASSIEKVW 111 (506)
T ss_pred ccccHHHHHHHHHHHH
Confidence 9999999998888753
No 233
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=95.29 E-value=0.33 Score=32.02 Aligned_cols=91 Identities=18% Similarity=0.279 Sum_probs=63.7
Q ss_pred cCCCCEEEEEeCCCChhHHhhhHHHHHHHhhcCC--ceEEEEEecCCc-------h---hhhH-hcCCC-----------
Q psy5679 58 RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG--VEFVKINVENGG-------G---EIAR-EFEVQ----------- 113 (149)
Q Consensus 58 ~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~--v~~~~vd~~~~~-------~---~~~~-~~~i~----------- 113 (149)
-+++.++|.=.|+-|+...+.. -|+.+.++|++ +.++..-|+..+ . .+|+ .||++
T Consensus 23 ~~GkVlLIVNtASkCGfTpQYe-gLe~Ly~ky~~~Gf~VLgFPcNQF~~QEPg~~eEI~~fC~~~YgVtFp~f~Ki~VnG 101 (162)
T COG0386 23 YKGKVLLIVNTASKCGFTPQYE-GLEALYKKYKDKGFEVLGFPCNQFGGQEPGSDEEIAKFCQLNYGVTFPMFSKIDVNG 101 (162)
T ss_pred hCCcEEEEEEcccccCCcHhHH-HHHHHHHHHhhCCcEEEeccccccccCCCCCHHHHHHHHHhccCceeeeeeEEeecC
Confidence 4788999999999999887664 67788888876 777776665330 1 1121 22221
Q ss_pred ------------ccc-------------EEEEEeCCeeeeeeeCCCCHHHHHHHHHHHhcC
Q psy5679 114 ------------AVP-------------TVIGFRNGDPVDTVVGNADQDVIQTLVSKLSQK 149 (149)
Q Consensus 114 ------------~~P-------------t~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~~k 149 (149)
..| .+++-++|+.+.++.-..+++++...|++++++
T Consensus 102 ~~a~PLy~~L~~~~~g~~~~~~IkWNFtKFLvdr~G~VV~Rf~p~t~P~d~~~~Ie~lL~~ 162 (162)
T COG0386 102 KNAHPLYKYLKEQKPGKLGGKDIKWNFTKFLVDRDGNVVKRFSPKTKPEDIELAIEKLLAE 162 (162)
T ss_pred CCCCcHHHHHHhcCCCCccCCccceeeEEEEEcCCCcEEEeeCCCCChhhHHHHHHHHhcC
Confidence 111 355557999999999888999999999988763
No 234
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=95.18 E-value=0.11 Score=29.23 Aligned_cols=57 Identities=14% Similarity=0.253 Sum_probs=32.9
Q ss_pred EEEeCCCChhHHhhhHHHHHHHhhcCCceEEEEEecCCchhhhHhcCCCcccEEEEEeCCee
Q psy5679 65 AYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTVIGFRNGDP 126 (149)
Q Consensus 65 v~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~~i~~~Pt~~~~~~g~~ 126 (149)
.+|+.++|++|++.+-.+....-.+ ....++.... ....+..+-..+|++.. .+|..
T Consensus 2 ~Ly~~~~~p~~~rvr~~L~~~gl~~---~~~~~~~~~~-~~~~~~~~~~~vP~L~~-~~~~~ 58 (71)
T cd03037 2 KLYIYEHCPFCVKARMIAGLKNIPV---EQIILQNDDE-ATPIRMIGAKQVPILEK-DDGSF 58 (71)
T ss_pred ceEecCCCcHhHHHHHHHHHcCCCe---EEEECCCCch-HHHHHhcCCCccCEEEe-CCCeE
Confidence 3577889999999987776653332 3333443322 22333445567999854 33543
No 235
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=95.17 E-value=0.039 Score=33.87 Aligned_cols=77 Identities=13% Similarity=0.234 Sum_probs=42.3
Q ss_pred EEEEeCCCChhHHhhhHHHHHHHhhcCCceEEEEEecCC---chhhhHhcCCCcccEEEEE-eCCeeeeee----eCCCC
Q psy5679 64 LAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENG---GGEIAREFEVQAVPTVIGF-RNGDPVDTV----VGNAD 135 (149)
Q Consensus 64 vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~---~~~~~~~~~i~~~Pt~~~~-~~g~~~~~~----~g~~~ 135 (149)
+..|+.++|+.|++....|++. ++.|-.+|+.+. ..++.+-.+-.+.+.--++ ..|...... ....+
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~-----~i~~~~idi~~~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~l~~~~~~~ls 75 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEH-----GIEYEFIDYLKEPPTKEELKELLAKLGLGVEDLFNTRGTPYRKLGLADKDELS 75 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHc-----CCCcEEEeeccCCCCHHHHHHHHHhcCCCHHHHHhcCCchHHHcCCccccCCC
Confidence 3578899999999998877764 455666666543 0233333333332222222 233322111 12356
Q ss_pred HHHHHHHHHH
Q psy5679 136 QDVIQTLVSK 145 (149)
Q Consensus 136 ~~~l~~~i~~ 145 (149)
.+++.++|.+
T Consensus 76 ~~e~~~~l~~ 85 (105)
T cd02977 76 DEEALELMAE 85 (105)
T ss_pred HHHHHHHHHh
Confidence 7777777765
No 236
>KOG2792|consensus
Probab=94.87 E-value=0.13 Score=36.75 Aligned_cols=90 Identities=23% Similarity=0.316 Sum_probs=59.9
Q ss_pred CCCCEEEEEeCCCChh-HHhhhHHHHHHHhhcC---C----ceEEEEEecCC-------------------------chh
Q psy5679 59 GRNPVLAYFFKPSCGF-CKQLEPKISTVSETTS---G----VEFVKINVENG-------------------------GGE 105 (149)
Q Consensus 59 ~~~~~vv~f~~~~C~~-C~~~~~~l~~~~~~~~---~----v~~~~vd~~~~-------------------------~~~ 105 (149)
.++.++++|.=+.||. |.+....+..+..+.. + =.|+.+|-+.. -..
T Consensus 138 ~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY~~eF~pkllGLTGT~eqvk~ 217 (280)
T KOG2792|consen 138 LGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEYVSEFHPKLLGLTGTTEQVKQ 217 (280)
T ss_pred ccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHHHHhcChhhhcccCCHHHHHH
Confidence 6889999999888875 6666555554444332 2 25777774222 034
Q ss_pred hhHhcCCCcc--c-----------EEEEE---eCCeeeeeeeCCCCHHHHHHHHHHHhc
Q psy5679 106 IAREFEVQAV--P-----------TVIGF---RNGDPVDTVVGNADQDVIQTLVSKLSQ 148 (149)
Q Consensus 106 ~~~~~~i~~~--P-----------t~~~~---~~g~~~~~~~g~~~~~~l~~~i~~~~~ 148 (149)
+|+.|.|.-- | |+++| ++|+.+..+-...+.+++.+-|.+.+.
T Consensus 218 vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~GrN~~~~~~~~~I~~~v~ 276 (280)
T KOG2792|consen 218 VAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYGRNYDADELADSILKHVA 276 (280)
T ss_pred HHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhhcccCCHHHHHHHHHHHHH
Confidence 5666766522 3 55555 689998877777899999998887764
No 237
>PHA03075 glutaredoxin-like protein; Provisional
Probab=94.80 E-value=0.089 Score=32.85 Aligned_cols=36 Identities=19% Similarity=0.578 Sum_probs=30.0
Q ss_pred CCEEEEEeCCCChhHHhhhHHHHHHHhhcCCceEEEEEe
Q psy5679 61 NPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINV 99 (149)
Q Consensus 61 ~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~ 99 (149)
+.++|+|+-|.|+-|......++++..+|. +.+||+
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY~---ilrVNI 37 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEYD---ILRVNI 37 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhcccc---EEEEEe
Confidence 568999999999999999999999988885 444443
No 238
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.66 E-value=0.088 Score=36.96 Aligned_cols=41 Identities=27% Similarity=0.443 Sum_probs=34.5
Q ss_pred hhhHhcCCCcccEEEEEeCCeeeeeeeCCCCHHHHHHHHHHHhcC
Q psy5679 105 EIAREFEVQAVPTVIGFRNGDPVDTVVGNADQDVIQTLVSKLSQK 149 (149)
Q Consensus 105 ~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~~k 149 (149)
..+++.||+++|++++ +|+. ...|..+++.+...|.+++++
T Consensus 175 ~~A~e~gI~gVP~fv~--d~~~--~V~Gaq~~~v~~~al~~~~~~ 215 (225)
T COG2761 175 AAAQEMGIRGVPTFVF--DGKY--AVSGAQPYDVLEDALRQLLAE 215 (225)
T ss_pred HHHHHCCCccCceEEE--cCcE--eecCCCCHHHHHHHHHHHHhc
Confidence 4567899999999999 6554 688989999999999988753
No 239
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=94.64 E-value=0.19 Score=27.37 Aligned_cols=57 Identities=14% Similarity=0.208 Sum_probs=36.0
Q ss_pred EEEeCCCChhHHhhhHHHHHHHhhcCCceEEEEEecCCch-hhhHhcCCCcccEEEEEeCCee
Q psy5679 65 AYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGG-EIAREFEVQAVPTVIGFRNGDP 126 (149)
Q Consensus 65 v~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~-~~~~~~~i~~~Pt~~~~~~g~~ 126 (149)
.+|+.++|+.|.+..-.++...-. +....++...... .+....+...+|++.. +|..
T Consensus 2 ~ly~~~~~~~~~~~~~~l~~~~i~---~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~--~~~~ 59 (71)
T cd00570 2 KLYYFPGSPRSLRVRLALEEKGLP---YELVPVDLGEGEQEEFLALNPLGKVPVLED--GGLV 59 (71)
T ss_pred EEEeCCCCccHHHHHHHHHHcCCC---cEEEEeCCCCCCCHHHHhcCCCCCCCEEEE--CCEE
Confidence 367889999999998777766333 3344444433201 2445567779998876 5654
No 240
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=94.53 E-value=0.097 Score=34.58 Aligned_cols=42 Identities=14% Similarity=0.183 Sum_probs=30.9
Q ss_pred CCCCEEEEEe-CCCChhHHhh-hHHHHHHHhhcCC--c-eEEEEEec
Q psy5679 59 GRNPVLAYFF-KPSCGFCKQL-EPKISTVSETTSG--V-EFVKINVE 100 (149)
Q Consensus 59 ~~~~~vv~f~-~~~C~~C~~~-~~~l~~~~~~~~~--v-~~~~vd~~ 100 (149)
.+++++++|| +.||+.|... .+.|.+...++.+ + .++.+..|
T Consensus 28 ~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D 74 (155)
T cd03013 28 KGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVN 74 (155)
T ss_pred CCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECC
Confidence 3455555555 7899999998 8888888888753 5 57777765
No 241
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=94.42 E-value=0.1 Score=29.29 Aligned_cols=53 Identities=9% Similarity=0.114 Sum_probs=35.1
Q ss_pred EEEeCCCChhHHhhhHHHHHHHhhcCCceEEEEEecC---CchhhhHhcCCCcccEEEE
Q psy5679 65 AYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVEN---GGGEIAREFEVQAVPTVIG 120 (149)
Q Consensus 65 v~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~---~~~~~~~~~~i~~~Pt~~~ 120 (149)
.+|+.++|++|++.+-.+++..-.+ ....++... ..+++.+......+|++..
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~~~l~~---~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAEKGIDV---PLVTVDLAAGEQRSPEFLAKNPAGTVPVLEL 57 (74)
T ss_pred EEEeCCCCcchHHHHHHHHHcCCCc---eEEEeecccCccCCHHHHhhCCCCCCCEEEe
Confidence 4678889999999998877764333 344455321 1144555556778999975
No 242
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=94.28 E-value=0.12 Score=32.37 Aligned_cols=33 Identities=21% Similarity=0.513 Sum_probs=25.6
Q ss_pred EEEeCCCChhHHhhhHHHHHHHhhcCCceEEEEEecCC
Q psy5679 65 AYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENG 102 (149)
Q Consensus 65 v~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~ 102 (149)
..|+.++|+.|++....|++- ++.+..+|+.+.
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~-----~i~~~~idi~~~ 34 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEAN-----GIEYQFIDIGED 34 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHHc-----CCceEEEecCCC
Confidence 468899999999999888773 466677777654
No 243
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear
Probab=94.12 E-value=0.98 Score=29.29 Aligned_cols=91 Identities=10% Similarity=0.200 Sum_probs=61.5
Q ss_pred cCCCCEEEEEeCCCChhHHhhhHHH---HHHHhhcCC-ceEEEEEecCCc-----------------hhhhHhcCCCccc
Q psy5679 58 RGRNPVLAYFFKPSCGFCKQLEPKI---STVSETTSG-VEFVKINVENGG-----------------GEIAREFEVQAVP 116 (149)
Q Consensus 58 ~~~~~~vv~f~~~~C~~C~~~~~~l---~~~~~~~~~-v~~~~vd~~~~~-----------------~~~~~~~~i~~~P 116 (149)
...|+.+|+..++....+..+...+ +++.+-..+ +.+..-|++... ....+.++...+|
T Consensus 19 ~e~K~L~VYLH~~~~~~t~~Fc~~~L~se~Vi~fl~~nfv~Wg~dvt~~~~~~~fl~~~~~~~g~~a~~~~~~~~~~~fP 98 (136)
T cd02990 19 RDRKLLAIYLHHDESVLSNVFCSQLLCAESIVQYLSQNFITWGWDMTKESNKARFLSSCTRHFGSVAAQTIRNIKTDQLP 98 (136)
T ss_pred hhcceEEEEEcCCCCccHHHHHHHHhcCHHHHHHHHcCEEEEeeeccchhhhhHHHHhhhhhhhHHHHHHHHhcCcCCCC
Confidence 4588999999888765554444433 333333333 778888876540 1234567789999
Q ss_pred EEEEEe-CC---eeeeeeeCCCCHHHHHHHHHHHhc
Q psy5679 117 TVIGFR-NG---DPVDTVVGNADQDVIQTLVSKLSQ 148 (149)
Q Consensus 117 t~~~~~-~g---~~~~~~~g~~~~~~l~~~i~~~~~ 148 (149)
.+.++. .. ..+.+..|..+++++.+.+...++
T Consensus 99 ~~avI~~~~~~~~vl~~i~G~~~~~ell~~L~~~ve 134 (136)
T cd02990 99 AILIIMGKRSSNEVLNVIQGNTGVDELLMRLIEAME 134 (136)
T ss_pred eEEEEEecCCceEEEEEEECCCCHHHHHHHHHHHHh
Confidence 998883 22 466789999999999998887653
No 244
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=94.12 E-value=1.3 Score=30.77 Aligned_cols=91 Identities=19% Similarity=0.239 Sum_probs=58.5
Q ss_pred cCCCCEEEEEeCCCCh-hHHhhhHHHHHHHhhcC-----CceEEEEEecCC--c--------------------------
Q psy5679 58 RGRNPVLAYFFKPSCG-FCKQLEPKISTVSETTS-----GVEFVKINVENG--G-------------------------- 103 (149)
Q Consensus 58 ~~~~~~vv~f~~~~C~-~C~~~~~~l~~~~~~~~-----~v~~~~vd~~~~--~-------------------------- 103 (149)
-++++++|.|.=+.|| -|......+..+.++.. ++.++.|.+|-+ +
T Consensus 65 l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~~~~~~~~~~ltg~~~~~ 144 (207)
T COG1999 65 LKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAELNFDPRWIGLTGTPEQI 144 (207)
T ss_pred cCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhcccCCCCeeeeeCCHHHH
Confidence 4799999999867775 47777777766666554 155554444422 1
Q ss_pred hhhhHhcCCCc---------------ccEEEEE-eCCeeeeeeeCCCCHHHHHHHHHHHhc
Q psy5679 104 GEIAREFEVQA---------------VPTVIGF-RNGDPVDTVVGNADQDVIQTLVSKLSQ 148 (149)
Q Consensus 104 ~~~~~~~~i~~---------------~Pt~~~~-~~g~~~~~~~g~~~~~~l~~~i~~~~~ 148 (149)
.++++.|++.. ...++++ ++|+....+.+..+++++.+.|+.+++
T Consensus 145 ~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~~~~~~~~~~i~~~l~~l~~ 205 (207)
T COG1999 145 EEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGTYDYGEPPEEIAADLKKLLK 205 (207)
T ss_pred HHHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEEEecCCCChHHHHHHHHHHhh
Confidence 23334444431 1233344 689998888877778999999988764
No 245
>PRK09301 circadian clock protein KaiB; Provisional
Probab=93.88 E-value=0.21 Score=30.66 Aligned_cols=72 Identities=19% Similarity=0.293 Sum_probs=56.4
Q ss_pred CCCEEEEEeCCCChhHHhhhHHHHHHHhhcC-C-ceEEEEEecCCchhhhHhcCCCcccEEEEEeCCeeeeeeeCC
Q psy5679 60 RNPVLAYFFKPSCGFCKQLEPKISTVSETTS-G-VEFVKINVENGGGEIAREFEVQAVPTVIGFRNGDPVDTVVGN 133 (149)
Q Consensus 60 ~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~-~-v~~~~vd~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~ 133 (149)
...++=+|.+..-+..+.....+.++.+.+- + ..+-.||+.++ |.+++.+.|-.+||++-.. -.+..+..|.
T Consensus 5 ~~~~LrLyVag~tp~S~~ai~nL~~icE~~l~g~y~LeVIDv~~q-PelAE~~~IvATPTLIK~~-P~P~rriiGD 78 (103)
T PRK09301 5 KTYILKLYVAGNTPNSVRALKTLKNILETEFKGVYALKVIDVLKN-PQLAEEDKILATPTLAKIL-PPPVRKIIGD 78 (103)
T ss_pred ceEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccC-HhHHhHCCeEEecHHhhcC-CCCcceeecc
Confidence 4556677788888899988889988877654 4 88888999999 9999999999999977542 2334566665
No 246
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=93.86 E-value=0.21 Score=29.69 Aligned_cols=71 Identities=21% Similarity=0.273 Sum_probs=54.6
Q ss_pred CEEEEEeCCCChhHHhhhHHHHHHHhhcC-C-ceEEEEEecCCchhhhHhcCCCcccEEEEEeCCeeeeeeeCCC
Q psy5679 62 PVLAYFFKPSCGFCKQLEPKISTVSETTS-G-VEFVKINVENGGGEIAREFEVQAVPTVIGFRNGDPVDTVVGNA 134 (149)
Q Consensus 62 ~~vv~f~~~~C~~C~~~~~~l~~~~~~~~-~-v~~~~vd~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~ 134 (149)
.++=+|.+..-+.++.....+.++.+.+- + ..+-.+|+.++ |.+++.+.+-.+||++-.. -.+..+..|..
T Consensus 4 ~~LrLyvag~~p~S~~ai~nl~~i~e~~l~g~y~LeVIDv~~q-P~lAE~~~IvATPtLIK~~-P~P~rriiGdl 76 (87)
T TIGR02654 4 YVLKLYVAGNTPNSVRALKTLKNILETEFQGVYALKVIDVLKN-PQLAEEDKILATPTLSKIL-PPPVRKIIGDL 76 (87)
T ss_pred EEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccC-HhHHhHCCEEEecHHhhcC-CCCcceeeccc
Confidence 35556777778888888888888877654 4 88888999999 9999999999999987542 23334666653
No 247
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=93.53 E-value=0.19 Score=32.28 Aligned_cols=34 Identities=21% Similarity=0.500 Sum_probs=24.3
Q ss_pred EEEEeCCCChhHHhhhHHHHHHHhhcCCceEEEEEecCC
Q psy5679 64 LAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENG 102 (149)
Q Consensus 64 vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~ 102 (149)
+..|+.++|+.|++....|++- ++.|-.+|+.+.
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~-----gi~~~~idi~~~ 35 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEH-----DIPFTERNIFSS 35 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc-----CCCcEEeeccCC
Confidence 4578899999999998777655 455555665433
No 248
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=93.52 E-value=0.21 Score=28.11 Aligned_cols=57 Identities=18% Similarity=0.345 Sum_probs=37.3
Q ss_pred EEEeCCCChhHHhhhHHHHHHHhhcCCceEEEEEecCC---chhhhHhcCCCcccEEEEEeCCee
Q psy5679 65 AYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENG---GGEIAREFEVQAVPTVIGFRNGDP 126 (149)
Q Consensus 65 v~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~---~~~~~~~~~i~~~Pt~~~~~~g~~ 126 (149)
.+|+.++|+.|++..-.+++..-. +....+|..+. .+++.+......+|++.. +|..
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~gi~---~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~--~~~~ 61 (74)
T cd03045 2 DLYYLPGSPPCRAVLLTAKALGLE---LNLKEVNLMKGEHLKPEFLKLNPQHTVPTLVD--NGFV 61 (74)
T ss_pred EEEeCCCCCcHHHHHHHHHHcCCC---CEEEEecCccCCcCCHHHHhhCcCCCCCEEEE--CCEE
Confidence 468899999999998888776444 34445554222 145555556678999964 4543
No 249
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=93.48 E-value=0.16 Score=31.60 Aligned_cols=33 Identities=18% Similarity=0.595 Sum_probs=25.0
Q ss_pred EEEeCCCChhHHhhhHHHHHHHhhcCCceEEEEEecCC
Q psy5679 65 AYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENG 102 (149)
Q Consensus 65 v~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~ 102 (149)
..|+.++|+.|++....|++- ++.|-.+|+.+.
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~-----~i~~~~idi~~~ 34 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDEH-----GVDYTAIDIVEE 34 (111)
T ss_pred EEEECCCCHHHHHHHHHHHHc-----CCceEEecccCC
Confidence 578899999999999877764 456666666544
No 250
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=93.40 E-value=0.6 Score=27.60 Aligned_cols=54 Identities=11% Similarity=0.169 Sum_probs=35.4
Q ss_pred EEEEeCCCChhHHhhhHHHHHHHhhcCCceEEEEEecCCchhhhHhcCCCcccEEEE
Q psy5679 64 LAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTVIG 120 (149)
Q Consensus 64 vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~~i~~~Pt~~~ 120 (149)
+.+|+.+.|++|+++.-.+++..-. +.+..++.....+++.+......+|.+..
T Consensus 19 ~~Ly~~~~sp~~~kv~~~L~~~gl~---~~~~~v~~~~~~~~~~~~np~~~vPvL~~ 72 (89)
T cd03055 19 IRLYSMRFCPYAQRARLVLAAKNIP---HEVININLKDKPDWFLEKNPQGKVPALEI 72 (89)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCC---CeEEEeCCCCCcHHHHhhCCCCCcCEEEE
Confidence 5567788899999998777665333 34455554433134555556778999975
No 251
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=93.38 E-value=0.22 Score=32.03 Aligned_cols=41 Identities=22% Similarity=0.364 Sum_probs=32.1
Q ss_pred hhhhHhcCCCcccEEEEEeCCe-----------eeeeeeCCCCHHHHHHHHH
Q psy5679 104 GEIAREFEVQAVPTVIGFRNGD-----------PVDTVVGNADQDVIQTLVS 144 (149)
Q Consensus 104 ~~~~~~~~i~~~Pt~~~~~~g~-----------~~~~~~g~~~~~~l~~~i~ 144 (149)
|.+-++|+|+.+|++++.+++. ......|..+.+...+.+.
T Consensus 61 P~lF~~f~I~~VPa~V~~~~~~~c~~~~~~~~~~~d~v~Gdvsl~~ALe~ia 112 (130)
T TIGR02742 61 PQWFKQFDITAVPAFVVVKDGLACLPEQPCPESDYDVVYGNVSLKGALEKMA 112 (130)
T ss_pred hHHHhhcCceEcCEEEEECCCCcccccCCCCCCCeeEEEecccHHHHHHHHH
Confidence 8899999999999999997774 3457778777666655554
No 252
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=92.45 E-value=0.29 Score=30.16 Aligned_cols=34 Identities=12% Similarity=0.240 Sum_probs=24.9
Q ss_pred EEEEeCCCChhHHhhhHHHHHHHhhcCCceEEEEEecCC
Q psy5679 64 LAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENG 102 (149)
Q Consensus 64 vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~ 102 (149)
+..|+.++|+.|++....|++- ++.|-.+|..+.
T Consensus 1 i~iy~~~~C~~crka~~~L~~~-----~i~~~~~di~~~ 34 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEAR-----GVAYTFHDYRKD 34 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHc-----CCCeEEEecccC
Confidence 3578899999999998877665 455566666544
No 253
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=92.39 E-value=0.33 Score=33.35 Aligned_cols=45 Identities=16% Similarity=0.121 Sum_probs=35.7
Q ss_pred hhhhHhcCCCcccEEEEEeCCeeeeeeeC--CCCHHHHHHHHHHHhc
Q psy5679 104 GEIAREFEVQAVPTVIGFRNGDPVDTVVG--NADQDVIQTLVSKLSQ 148 (149)
Q Consensus 104 ~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g--~~~~~~l~~~i~~~~~ 148 (149)
..+++++++.++||+++-.||+..-.-.| ..+.+.+..++.+.+.
T Consensus 164 r~l~~rlg~~GfPTl~le~ng~~~~l~~g~y~~~~~~~~arl~~~~~ 210 (212)
T COG3531 164 RRLMQRLGAAGFPTLALERNGTMYVLGTGAYFGSPDAWLARLAQRLA 210 (212)
T ss_pred HHHHHHhccCCCCeeeeeeCCceEeccCCcccCCcHHHHHHHHHHHh
Confidence 46788999999999999999998655555 3577888888877653
No 254
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=91.75 E-value=0.54 Score=29.37 Aligned_cols=34 Identities=18% Similarity=0.434 Sum_probs=24.5
Q ss_pred EEEEeCCCChhHHhhhHHHHHHHhhcCCceEEEEEecCC
Q psy5679 64 LAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENG 102 (149)
Q Consensus 64 vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~ 102 (149)
+.+|+.++|+.|++....|++. ++.+-.+|+.+.
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~-----gi~~~~idi~~~ 35 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEH-----QIPFEERNLFKQ 35 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-----CCceEEEecCCC
Confidence 4578889999999999887774 455555665443
No 255
>PRK12559 transcriptional regulator Spx; Provisional
Probab=91.73 E-value=0.53 Score=30.28 Aligned_cols=34 Identities=12% Similarity=0.443 Sum_probs=23.8
Q ss_pred EEEEeCCCChhHHhhhHHHHHHHhhcCCceEEEEEecCC
Q psy5679 64 LAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENG 102 (149)
Q Consensus 64 vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~ 102 (149)
+..|+.++|+.|++....|++- ++.|-.+|+.+.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~-----gi~~~~~di~~~ 35 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEEN-----QIDYTEKNIVSN 35 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc-----CCCeEEEEeeCC
Confidence 4678899999999998777665 344555555433
No 256
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=91.49 E-value=2.3 Score=26.59 Aligned_cols=20 Identities=20% Similarity=0.562 Sum_probs=18.6
Q ss_pred hhhhHhcCCCcccEEEEEeC
Q psy5679 104 GEIAREFEVQAVPTVIGFRN 123 (149)
Q Consensus 104 ~~~~~~~~i~~~Pt~~~~~~ 123 (149)
|.+-++|+|+.+|++++.++
T Consensus 61 P~~F~~y~I~~VPa~V~~~~ 80 (113)
T PF09673_consen 61 PRLFRQYNITAVPAFVVVKD 80 (113)
T ss_pred hhHHhhCCceEcCEEEEEcC
Confidence 88999999999999999876
No 257
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=91.38 E-value=0.087 Score=31.02 Aligned_cols=54 Identities=22% Similarity=0.256 Sum_probs=44.9
Q ss_pred EEeCCCChhHHhhhHHHHHHHhhcCC--ceEEEEEecCCchhhhHhcCCCcccEEEE
Q psy5679 66 YFFKPSCGFCKQLEPKISTVSETTSG--VEFVKINVENGGGEIAREFEVQAVPTVIG 120 (149)
Q Consensus 66 ~f~~~~C~~C~~~~~~l~~~~~~~~~--v~~~~vd~~~~~~~~~~~~~i~~~Pt~~~ 120 (149)
+|-+..-+.+......+..+.+.+-+ ..+-.||+.++ +.+++.++|-.+||++-
T Consensus 2 LyV~g~~~~s~~a~~~l~~l~~~~l~~~~~LeVIDv~~~-P~lAe~~~ivAtPtLik 57 (82)
T PF07689_consen 2 LYVAGRTPSSERAIENLRRLCEEYLGGRYELEVIDVLEQ-PELAEEDRIVATPTLIK 57 (82)
T ss_dssp EEESSBHHHHHHHHHHHHHHHHCHCTTTEEEEEEETTTS-HSHHTTTEEECHHHHHT
T ss_pred eEECCCChHHHHHHHHHHHHHHhhCCCcEEEEEEEcccC-HhHHhHCCeeecceEee
Confidence 35555667778888899999888554 88999999999 99999999999999764
No 258
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=91.24 E-value=1.1 Score=32.19 Aligned_cols=59 Identities=10% Similarity=0.058 Sum_probs=40.1
Q ss_pred HHcCCCCEEEEEeCCCChhHHhhhHHHHHHHhhcCCceEEEEEecCCchhhhHhcCCCcccEEEEE
Q psy5679 56 TIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTVIGF 121 (149)
Q Consensus 56 ~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~~i~~~Pt~~~~ 121 (149)
....+|+.+++..+.|||.|...+=.|--...+|.++.+.....+.. -.-..+|++++.
T Consensus 54 ~~~~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfGn~~l~~~~S~~~-------d~~pn~Ptl~F~ 112 (249)
T PF06053_consen 54 LAPNGKPEVIFIGWEGCPYCAAESWALYIALSRFGNFSLEYHYSDPY-------DNYPNTPTLIFN 112 (249)
T ss_pred cCCCCeeEEEEEecccCccchhhHHHHHHHHHhcCCeeeEEeecCcc-------cCCCCCCeEEEe
Confidence 33689999999999999999988777777777776553322221111 112467888775
No 259
>COG5429 Uncharacterized secreted protein [Function unknown]
Probab=90.70 E-value=1.2 Score=31.47 Aligned_cols=85 Identities=19% Similarity=0.304 Sum_probs=57.6
Q ss_pred CCCCEEEEEeCCCChhHHhhhHHHHHHHhhcCCceEE--EEEecCC---------------chhhhHhcCCCcccEEEEE
Q psy5679 59 GRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFV--KINVENG---------------GGEIAREFEVQAVPTVIGF 121 (149)
Q Consensus 59 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~--~vd~~~~---------------~~~~~~~~~i~~~Pt~~~~ 121 (149)
+...||=+|.+..|..|-.....|.+++.+-. +.-. .||.-+. +....+.|+-++++|=-.+
T Consensus 40 k~~~VVELfTSQGCsSCPPAd~~l~k~a~~~~-vlALsyhVdYWdYlGWkDtlar~enTeRQ~aY~~a~g~~~vyTPQav 118 (261)
T COG5429 40 KPLGVVELFTSQGCSSCPPADANLAKLADDPG-VLALSYHVDYWDYLGWKDTLARKENTERQRAYARAFGARGVYTPQAV 118 (261)
T ss_pred CCceEEEEeecCCcCCCChHHHHHHHhccCCC-EEEEEEeecccccCCccccccchhhhHHHHHHHHhhccCCCCCchhe
Confidence 34556777888999999999999999987753 3333 3332111 1456667787876665555
Q ss_pred eCCeeeeeeeCCCCHHHHHHHHHHHh
Q psy5679 122 RNGDPVDTVVGNADQDVIQTLVSKLS 147 (149)
Q Consensus 122 ~~g~~~~~~~g~~~~~~l~~~i~~~~ 147 (149)
-+|+. ...| .+...+.+.|...-
T Consensus 119 vnGr~--~~~G-ad~~~i~~~i~a~~ 141 (261)
T COG5429 119 VNGRV--HANG-ADPGAIEDAIAAMA 141 (261)
T ss_pred eechh--hhcC-CCHHHHHHHHHHhh
Confidence 58876 3556 78888888887653
No 260
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=90.55 E-value=2.8 Score=26.68 Aligned_cols=63 Identities=14% Similarity=0.277 Sum_probs=37.8
Q ss_pred hhhHHHHHHHhhcCCceEEEEEecCCch----------hhhHhcCCCcccEEEEEeCCeeeeeeeCCCCHHHHHHHHHH
Q psy5679 77 QLEPKISTVSETTSGVEFVKINVENGGG----------EIAREFEVQAVPTVIGFRNGDPVDTVVGNADQDVIQTLVSK 145 (149)
Q Consensus 77 ~~~~~l~~~~~~~~~v~~~~vd~~~~~~----------~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~ 145 (149)
++...++.+.+ .++.+.+.+..++ + .+.+.-|...+|-+++ ||+.+. ....++.++|.+|+.-
T Consensus 28 ~~a~~~~~Lk~--~gv~v~RyNL~~~-P~aF~~n~~V~~~L~~~G~e~LPitlV--dGeiv~-~G~YPt~eEl~~~~~i 100 (123)
T PF06953_consen 28 RFAADLDWLKE--QGVEVERYNLAQN-PQAFVENPEVNQLLQTEGAEALPITLV--DGEIVK-TGRYPTNEELAEWLGI 100 (123)
T ss_dssp HHHHHHHHHHH--TT-EEEEEETTT--TTHHHHSHHHHHHHHHH-GGG-SEEEE--TTEEEE-ESS---HHHHHHHHT-
T ss_pred HHHHHHHHHHh--CCceEEEEccccC-HHHHHhCHHHHHHHHHcCcccCCEEEE--CCEEEE-ecCCCCHHHHHHHhCC
Confidence 34444455533 2599999998766 3 2334568899999988 999863 3334899999999764
No 261
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=89.90 E-value=0.63 Score=31.67 Aligned_cols=36 Identities=25% Similarity=0.367 Sum_probs=28.6
Q ss_pred hhhhHhcCCCcccEEEEEeCCeeeeeeeCCCCHHHHHHHH
Q psy5679 104 GEIAREFEVQAVPTVIGFRNGDPVDTVVGNADQDVIQTLV 143 (149)
Q Consensus 104 ~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i 143 (149)
...+.+.|+.++|++++ +|+. ...|..+.+.+.+.|
T Consensus 165 ~~~a~~~gv~G~Pt~vv--~g~~--~~~G~~~~~~~~~~i 200 (201)
T cd03024 165 EARARQLGISGVPFFVF--NGKY--AVSGAQPPEVFLQAL 200 (201)
T ss_pred HHHHHHCCCCcCCEEEE--CCeE--eecCCCCHHHHHHHh
Confidence 35567889999999999 7764 467888888888765
No 262
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=89.84 E-value=5.5 Score=28.29 Aligned_cols=43 Identities=19% Similarity=0.402 Sum_probs=35.0
Q ss_pred cCCCCEEEEEeCCCChhHHhhhHHHHHHHhh-----cCCceEEEEEec
Q psy5679 58 RGRNPVLAYFFKPSCGFCKQLEPKISTVSET-----TSGVEFVKINVE 100 (149)
Q Consensus 58 ~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~-----~~~v~~~~vd~~ 100 (149)
..+..+||-+...+|..|..-...|+.|..+ +++|.|+.|+--
T Consensus 24 ~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~ 71 (238)
T PF04592_consen 24 SLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQ 71 (238)
T ss_pred cCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCC
Confidence 4578888889999999999999999888744 445899988853
No 263
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=89.33 E-value=1 Score=25.06 Aligned_cols=57 Identities=16% Similarity=0.208 Sum_probs=35.4
Q ss_pred EEEeCCCChhHHhhhHHHHHHHhhcCCceEEEEEecC---CchhhhHhcCCCcccEEEEEeCCee
Q psy5679 65 AYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVEN---GGGEIAREFEVQAVPTVIGFRNGDP 126 (149)
Q Consensus 65 v~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~---~~~~~~~~~~i~~~Pt~~~~~~g~~ 126 (149)
.+|+.+.|+.|.+..-.+++..-. +....+|... ..+++.+......+|++.. +|..
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~~~~---~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~--~~~~ 61 (73)
T cd03056 2 KLYGFPLSGNCYKVRLLLALLGIP---YEWVEVDILKGETRTPEFLALNPNGEVPVLEL--DGRV 61 (73)
T ss_pred EEEeCCCCccHHHHHHHHHHcCCC---cEEEEecCCCcccCCHHHHHhCCCCCCCEEEE--CCEE
Confidence 467889999999998777766433 3444555322 1133444444568999975 5654
No 264
>KOG1651|consensus
Probab=89.03 E-value=3.9 Score=27.45 Aligned_cols=91 Identities=13% Similarity=0.171 Sum_probs=59.6
Q ss_pred cCCCCEEEEEeCCCChhHHhhhHHHHHHHhhcCC--ceEEEEEecCCc-------h----hhhHhcCCC-----------
Q psy5679 58 RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG--VEFVKINVENGG-------G----EIAREFEVQ----------- 113 (149)
Q Consensus 58 ~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~--v~~~~vd~~~~~-------~----~~~~~~~i~----------- 113 (149)
-+++.++|.=-|+.|+.-..--..|.++.++|++ +.++..-|...+ . .++.+|+..
T Consensus 32 yrGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~Gl~ILaFPCNQFg~QEp~~n~Ei~~f~~~r~~~~f~if~KidVNG 111 (171)
T KOG1651|consen 32 YRGKVVLIVNVASQCGLTESQYTELNELYEKYKDQGLEILAFPCNQFGNQEPGSNEEILNFVKVRYGAEFPIFQKIDVNG 111 (171)
T ss_pred hCCeEEEEEEcccccccchhcchhHHHHHHHHhhCCeEEEEeccccccCcCCCCcHHHHHHHHhccCCCCccEeEEecCC
Confidence 4788888888899999888666688888888865 777766665330 1 122233320
Q ss_pred ------------c------------ccEEEEEeCCeeeeeeeCCCCHHHHHHHHHHHhc
Q psy5679 114 ------------A------------VPTVIGFRNGDPVDTVVGNADQDVIQTLVSKLSQ 148 (149)
Q Consensus 114 ------------~------------~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~~ 148 (149)
. +=.+++-++|+++.++.-..++.++..-|++++.
T Consensus 112 ~~~~PlykfLK~~~~~~lg~~IkWNF~KFLVd~~G~vv~Ry~ptt~p~~~~~dIe~lL~ 170 (171)
T KOG1651|consen 112 DNADPLYKFLKKVKGGPLGDDIKWNFTKFLVDKDGHVVKRFSPTTSPLDIEKDIEKLLA 170 (171)
T ss_pred CCCchHHHHHhhcCCCcccccceeeeEEEeECCCCcEEEeeCCCCCccccchhHHHHhc
Confidence 0 1134455789998888876677777777777664
No 265
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=88.77 E-value=2.9 Score=23.63 Aligned_cols=58 Identities=10% Similarity=0.044 Sum_probs=37.3
Q ss_pred EEEeCCCChhHHhhhHHHHHHHhhcCCceEEEEEecC---CchhhhHhcCCCcccEEEEEeCCeee
Q psy5679 65 AYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVEN---GGGEIAREFEVQAVPTVIGFRNGDPV 127 (149)
Q Consensus 65 v~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~---~~~~~~~~~~i~~~Pt~~~~~~g~~~ 127 (149)
.+|+.+.|+.|+++.-.+++..-. +.+..+|... ..+++.+--....+|++.. +|..+
T Consensus 2 ~ly~~~~s~~s~rv~~~L~e~gl~---~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~~--~g~~l 62 (73)
T cd03052 2 VLYHWTQSFSSQKVRLVIAEKGLR---CEEYDVSLPLSEHNEPWFMRLNPTGEVPVLIH--GDNII 62 (73)
T ss_pred EEecCCCCccHHHHHHHHHHcCCC---CEEEEecCCcCccCCHHHHHhCcCCCCCEEEE--CCEEE
Confidence 467888899999988766666443 4555666532 1134555555678999963 67543
No 266
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=88.77 E-value=0.7 Score=31.19 Aligned_cols=27 Identities=37% Similarity=0.886 Sum_probs=24.7
Q ss_pred EEEEeCCCChhHHhhhHHHHHHHhhcC
Q psy5679 64 LAYFFKPSCGFCKQLEPKISTVSETTS 90 (149)
Q Consensus 64 vv~f~~~~C~~C~~~~~~l~~~~~~~~ 90 (149)
+.+|+.+.||+|-...+.++++.+.++
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~~ 29 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEYG 29 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHhC
Confidence 668889999999999999999999984
No 267
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=87.96 E-value=5.1 Score=28.04 Aligned_cols=74 Identities=23% Similarity=0.257 Sum_probs=50.5
Q ss_pred EEEEeCCCChhHHhhhHHHHHHHhhcCCceEEEEEecCCchhhhHhcCCCcccEEEEEeCCeeeeeeeCCCCHHHHHHHH
Q psy5679 64 LAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTVIGFRNGDPVDTVVGNADQDVIQTLV 143 (149)
Q Consensus 64 vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i 143 (149)
+=.|....|..|..+...+++-. ..++++| +|.... +...-+-+|-++|++++ ||+.+ +.++.++++++..+
T Consensus 13 VkI~~HktC~ssy~Lf~~L~nkg-ll~~Vki--i~a~~p-~f~~~~~~V~SvP~Vf~--DGel~--~~dpVdp~~ies~~ 84 (265)
T COG5494 13 VKIFTHKTCVSSYMLFEYLENKG-LLGKVKI--IDAELP-PFLAFEKGVISVPSVFI--DGELV--YADPVDPEEIESIL 84 (265)
T ss_pred EEEEEecchHHHHHHHHHHHhcC-CCCCceE--EEcCCC-hHHHhhcceeecceEEE--cCeEE--EcCCCCHHHHHHHH
Confidence 33466778999988776665411 1233555 345555 56666668999999877 99884 66778888888877
Q ss_pred HH
Q psy5679 144 SK 145 (149)
Q Consensus 144 ~~ 145 (149)
+-
T Consensus 85 ~G 86 (265)
T COG5494 85 SG 86 (265)
T ss_pred cC
Confidence 54
No 268
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=87.89 E-value=1.5 Score=28.19 Aligned_cols=34 Identities=15% Similarity=0.357 Sum_probs=23.6
Q ss_pred EEEEeCCCChhHHhhhHHHHHHHhhcCCceEEEEEecCC
Q psy5679 64 LAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENG 102 (149)
Q Consensus 64 vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~ 102 (149)
+..|+.++|+.|++....|++- ++.|-.+|+.+.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~-----~i~~~~~d~~~~ 35 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAH-----QLSYKEQNLGKE 35 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHc-----CCCeEEEECCCC
Confidence 4577889999999988766553 455566665433
No 269
>KOG2244|consensus
Probab=87.74 E-value=0.88 Score=36.22 Aligned_cols=72 Identities=13% Similarity=0.262 Sum_probs=51.1
Q ss_pred chhhHHHHHcCCCCEEEEEeCCCChhHHhhhHH-H--HHHHhhcCC-ceEEEEEecCCchhhhH--------hcCCCccc
Q psy5679 49 KIDDFKQTIRGRNPVLAYFFKPSCGFCKQLEPK-I--STVSETTSG-VEFVKINVENGGGEIAR--------EFEVQAVP 116 (149)
Q Consensus 49 ~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~-l--~~~~~~~~~-v~~~~vd~~~~~~~~~~--------~~~i~~~P 116 (149)
+.+.|+.+.++++|+++-..-+.|.+|+-+... | ++.++...+ +.-++||.++- |++-+ ..|-.++|
T Consensus 101 gqeaf~kar~enkpifLsvgystchwchvmekesfeneet~~ilnenfv~ikVDREER-PDVDK~YM~Fv~assg~GGWP 179 (786)
T KOG2244|consen 101 GQEAFNKARAENKPIFLSVGYSTCHWCHVMEKESFENEETGEILNENFVKIKVDREER-PDVDKLYMAFVVASSGGGGWP 179 (786)
T ss_pred hHHHHHHHHhcCCCEEEEcccccchheeeeecccccCHHHHHHHhhhhhhhccChhhc-CchHHHHHHHHHhccCCCCCc
Confidence 457788888999999999999999999887653 2 345555443 55566676666 66544 45667888
Q ss_pred EEEEE
Q psy5679 117 TVIGF 121 (149)
Q Consensus 117 t~~~~ 121 (149)
--++.
T Consensus 180 msV~L 184 (786)
T KOG2244|consen 180 MSVFL 184 (786)
T ss_pred eeEEe
Confidence 76665
No 270
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=87.50 E-value=11 Score=28.62 Aligned_cols=106 Identities=9% Similarity=0.089 Sum_probs=66.6
Q ss_pred ceeEEEecchhhHHHHH--cCCCCEEEEEeCCCChhHHhhhHHHHHHHhhcCC---ceEEEEEecCCchhhh----HhcC
Q psy5679 41 QMAYLIIEKIDDFKQTI--RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG---VEFVKINVENGGGEIA----REFE 111 (149)
Q Consensus 41 ~~~v~~i~~~~~~~~~~--~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~---v~~~~vd~~~~~~~~~----~~~~ 111 (149)
...+..++- +++-+.- .-++..+|-|-....+.-..+...++++|+.+.+ +.++.||-+.. |-+. +.|+
T Consensus 248 rptlrkl~~-~~m~e~Wedd~~g~hIvaFaee~dpdG~efleilk~va~~nt~np~LsivwIDPD~f-Pllv~yWE~tF~ 325 (383)
T PF01216_consen 248 RPTLRKLRP-EDMFETWEDDIDGIHIVAFAEEEDPDGFEFLEILKQVARDNTDNPDLSIVWIDPDDF-PLLVPYWEKTFG 325 (383)
T ss_dssp S-SEEE--G-GGHHHHHHSSSSSEEEEEE--TTSHHHHHHHHHHHHHHHHCTT-TT--EEEE-GGG--HHHHHHHHHHHT
T ss_pred hhHhhhCCh-hhhhhhhcccCCCceEEEEecCCCCchHHHHHHHHHHHHhcCcCCceeEEEECCCCC-chhHHHHHhhcC
Confidence 344667764 5544443 5688899999999999999999999999999875 99999999988 6554 4566
Q ss_pred CC-cccEEEEEe--CCeeee-eee---CCCCHHHHHHHHHHHhc
Q psy5679 112 VQ-AVPTVIGFR--NGDPVD-TVV---GNADQDVIQTLVSKLSQ 148 (149)
Q Consensus 112 i~-~~Pt~~~~~--~g~~~~-~~~---g~~~~~~l~~~i~~~~~ 148 (149)
|. .-|.+-+.. +..-++ ... ...+.++|..||..++.
T Consensus 326 Idl~~PqIGvVnvtdadsvW~dm~d~~d~pt~~~LedWieDVls 369 (383)
T PF01216_consen 326 IDLSRPQIGVVNVTDADSVWMDMDDDDDLPTAEELEDWIEDVLS 369 (383)
T ss_dssp T-TTS-EEEEEETTTSEEEEC-STTTSS---HHHHHHHHHHHHC
T ss_pred ccccCCceeEEeccccccchhccCCcccCCcHHHHHHHHHHHhc
Confidence 54 359887772 333333 111 23588999999998864
No 271
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=86.71 E-value=5.1 Score=24.53 Aligned_cols=73 Identities=27% Similarity=0.388 Sum_probs=47.4
Q ss_pred hhHHHHHcCCCCEEEEEeC---CCChhHHhhhHHHHHHHhhcCCceEEEEEecCCchhhhHhcC-CCcccEEE-EEeCCe
Q psy5679 51 DDFKQTIRGRNPVLAYFFK---PSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFE-VQAVPTVI-GFRNGD 125 (149)
Q Consensus 51 ~~~~~~~~~~~~~vv~f~~---~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~~-i~~~Pt~~-~~~~g~ 125 (149)
+-.++.+..+..++.+=.+ |.|+.+.+....|..... +.|..+|+-.+ +++.+.+. ...+||+= +|-+|+
T Consensus 6 ~~I~~~i~~n~VvLFMKGtp~~P~CGFS~~~vqiL~~~g~----v~~~~vnVL~d-~eiR~~lk~~s~WPT~PQLyi~GE 80 (105)
T COG0278 6 DRIQKQIKENPVVLFMKGTPEFPQCGFSAQAVQILSACGV----VDFAYVDVLQD-PEIRQGLKEYSNWPTFPQLYVNGE 80 (105)
T ss_pred HHHHHHhhcCceEEEecCCCCCCCCCccHHHHHHHHHcCC----cceeEEeeccC-HHHHhccHhhcCCCCCceeeECCE
Confidence 4556666555554444444 568877777776665522 78899999999 88877553 34677653 445887
Q ss_pred eee
Q psy5679 126 PVD 128 (149)
Q Consensus 126 ~~~ 128 (149)
.+.
T Consensus 81 fvG 83 (105)
T COG0278 81 FVG 83 (105)
T ss_pred Eec
Confidence 653
No 272
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=86.29 E-value=1.2 Score=29.99 Aligned_cols=35 Identities=26% Similarity=0.321 Sum_probs=25.6
Q ss_pred hhhhHhcCCCcccEEEEEeCCeeeeeeeCCCCHHHHHHHH
Q psy5679 104 GEIAREFEVQAVPTVIGFRNGDPVDTVVGNADQDVIQTLV 143 (149)
Q Consensus 104 ~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i 143 (149)
...+.++|+.++|++++ +|+. +.|....+.+.+.|
T Consensus 157 ~~~a~~~gi~gvPtfvv--~g~~---~~G~~~l~~~~~~l 191 (192)
T cd03022 157 TEEAIARGVFGVPTFVV--DGEM---FWGQDRLDMLEEAL 191 (192)
T ss_pred HHHHHHcCCCcCCeEEE--CCee---ecccccHHHHHHHh
Confidence 34567889999999999 8864 45766666666654
No 273
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=86.24 E-value=2.1 Score=28.84 Aligned_cols=42 Identities=26% Similarity=0.446 Sum_probs=29.3
Q ss_pred CCCCEEEEEeCCCC-hhHHhhhHHHHHHHhhcC----CceEEEEEec
Q psy5679 59 GRNPVLAYFFKPSC-GFCKQLEPKISTVSETTS----GVEFVKINVE 100 (149)
Q Consensus 59 ~~~~~vv~f~~~~C-~~C~~~~~~l~~~~~~~~----~v~~~~vd~~ 100 (149)
++++++|.|.=+.| .-|......+.++.+..+ +++++.|.+|
T Consensus 51 ~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvD 97 (174)
T PF02630_consen 51 KGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVD 97 (174)
T ss_dssp TTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESS
T ss_pred CCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeC
Confidence 78999999988888 567766666665555432 3777777776
No 274
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=84.50 E-value=3.8 Score=22.93 Aligned_cols=58 Identities=9% Similarity=0.074 Sum_probs=36.2
Q ss_pred EEEEeCCCChhHHhhhHHHHHHHhhcCCceEEEEEecC---CchhhhHhcCCCcccEEEEEeCCee
Q psy5679 64 LAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVEN---GGGEIAREFEVQAVPTVIGFRNGDP 126 (149)
Q Consensus 64 vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~---~~~~~~~~~~i~~~Pt~~~~~~g~~ 126 (149)
+.+|+.+.|+.|++..-.+++..-. +....++... ..+++.+......+|++.. +|..
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i~---~~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~~--~g~~ 62 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGVD---YELVPVDLTKGEHKSPEHLARNPFGQIPALED--GDLK 62 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCCC---cEEEEeCccccccCCHHHHhhCCCCCCCEEEE--CCEE
Confidence 4566677899999998777776443 3444445421 1144555566778998854 5543
No 275
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=84.15 E-value=2.6 Score=29.23 Aligned_cols=40 Identities=18% Similarity=0.318 Sum_probs=30.2
Q ss_pred hhhhHhcCCCcccEEEEEeCCeeeeeeeCCCCHHHHHHHHH
Q psy5679 104 GEIAREFEVQAVPTVIGFRNGDPVDTVVGNADQDVIQTLVS 144 (149)
Q Consensus 104 ~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~ 144 (149)
|.+-++|+|+.+|++++.. +.......|..+..+-.+.+.
T Consensus 152 P~lF~~F~I~~VPafVv~C-~~~yD~I~GNIsl~~ALe~iA 191 (212)
T PRK13730 152 PTLFSQYGIRSVPALVVFC-SQGYDIIRGNLRVGQALEKVA 191 (212)
T ss_pred HHHHHhcCCccccEEEEEc-CCCCCEEEecccHHHHHHHHH
Confidence 7889999999999999974 344467788777665555444
No 276
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=84.06 E-value=13 Score=26.68 Aligned_cols=56 Identities=16% Similarity=0.235 Sum_probs=39.8
Q ss_pred cCCCCEEEEEeCCC------ChhHHhhhHHHHHHHhhcCC-ceEEEEEecCCchhhhHh----cCCCc
Q psy5679 58 RGRNPVLAYFFKPS------CGFCKQLEPKISTVSETTSG-VEFVKINVENGGGEIARE----FEVQA 114 (149)
Q Consensus 58 ~~~~~~vv~f~~~~------C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~~~~~~~~----~~i~~ 114 (149)
.-++++-|.+|.+- -+.-..+...|+++++..++ +.+-.+|-+.+ +...++ +|+..
T Consensus 22 ~L~~pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~s~g~i~v~~iDp~~~-~~~~~~~~~~~Gi~~ 88 (271)
T PF09822_consen 22 SLDEPVTITVYFSRELPPELSPLRKQVRDLLDEYARYSPGKIKVEFIDPDEN-PSEAEEKAKEYGIQP 88 (271)
T ss_pred hCCCCEEEEEEECCCcchhhhHHHHHHHHHHHHHHHhCCCceEEEEECCCCC-hHHHHHHHHhcCCCc
Confidence 33566666666554 55666777788888888885 99999998777 655555 88776
No 277
>KOG4277|consensus
Probab=84.02 E-value=6.3 Score=29.24 Aligned_cols=83 Identities=12% Similarity=0.204 Sum_probs=48.4
Q ss_pred HHHHHcCCCCEEEEEeCCCChhHHhhhHHHHHHHhhcCC-ceEEEEEecCCchhhhHhcCCCcccEEEEEeCCeeeeeee
Q psy5679 53 FKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENGGGEIAREFEVQAVPTVIGFRNGDPVDTVV 131 (149)
Q Consensus 53 ~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~ 131 (149)
+.....+.++.+|+|.+...| .++.+...-.. +.+.+.-...+ .-....-..+..|.+.+|++...-....
T Consensus 146 fehlq~Rhq~ffVf~Gtge~P-------L~d~fidAASe~~~~a~FfSase-eVaPe~~~~kempaV~VFKDetf~i~de 217 (468)
T KOG4277|consen 146 FEHLQARHQPFFVFFGTGEGP-------LFDAFIDAASEKFSVARFFSASE-EVAPEENDAKEMPAVAVFKDETFEIEDE 217 (468)
T ss_pred HHHHhhccCceEEEEeCCCCc-------HHHHHHHHhhhheeeeeeecccc-ccCCcccchhhccceEEEccceeEEEec
Confidence 333337899999999865433 33333222222 33333222222 1223334567899999999887644555
Q ss_pred CCCCHHHHHHHHHH
Q psy5679 132 GNADQDVIQTLVSK 145 (149)
Q Consensus 132 g~~~~~~l~~~i~~ 145 (149)
| +.++|.+||+.
T Consensus 218 ~--dd~dLseWinR 229 (468)
T KOG4277|consen 218 G--DDEDLSEWINR 229 (468)
T ss_pred C--chhHHHHHHhH
Confidence 5 78889999875
No 278
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=83.20 E-value=1.8 Score=26.68 Aligned_cols=58 Identities=14% Similarity=0.394 Sum_probs=36.4
Q ss_pred EEeCCCChhHHhhhHHHHHHHhhcCCceEEEEEecCCchhhhHhcCCC--cccEEEE-EeCCe
Q psy5679 66 YFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQ--AVPTVIG-FRNGD 125 (149)
Q Consensus 66 ~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~~i~--~~Pt~~~-~~~g~ 125 (149)
.||.-+|+.|......+.+... ...+.|+.+.-... .++.+.+++. ..-+.+. ..+|+
T Consensus 1 v~YDg~C~lC~~~~~~l~~~d~-~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~g~ 61 (114)
T PF04134_consen 1 VFYDGDCPLCRREVRFLRRRDR-GGRLRFVDIQSEPD-QALLASYGISPEDADSRLHLIDDGE 61 (114)
T ss_pred CEECCCCHhHHHHHHHHHhcCC-CCCEEEEECCChhh-hhHHHhcCcCHHHHcCeeEEecCCC
Confidence 3788999999999998888732 22266666533333 3455666665 3444444 46776
No 279
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=82.32 E-value=5.7 Score=22.06 Aligned_cols=60 Identities=12% Similarity=0.282 Sum_probs=35.1
Q ss_pred EEEeCCCChhHHhhhHHHHHHHhhcCCceEEEEEecCCchhhhHhcCCCcccEEEEEeCCee
Q psy5679 65 AYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTVIGFRNGDP 126 (149)
Q Consensus 65 v~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~~i~~~Pt~~~~~~g~~ 126 (149)
.+|+.+.|+.|.+..-.+++.....+ +..+.+|.....+++.+......+|.+.. .+|..
T Consensus 2 ~Ly~~~~s~~~~~~~~~l~~~~~~i~-~~~~~~~~~~~~~~~~~~~p~~~vP~l~~-~~g~~ 61 (73)
T cd03049 2 KLLYSPTSPYVRKVRVAAHETGLGDD-VELVLVNPWSDDESLLAVNPLGKIPALVL-DDGEA 61 (73)
T ss_pred EEecCCCCcHHHHHHHHHHHhCCCCC-cEEEEcCcccCChHHHHhCCCCCCCEEEE-CCCCE
Confidence 35778889999988776666211111 44555553332145555556678998864 25543
No 280
>KOG1422|consensus
Probab=82.19 E-value=15 Score=25.78 Aligned_cols=65 Identities=15% Similarity=0.191 Sum_probs=43.0
Q ss_pred CChhHHhhhHHHHHHHhhcCCceEEEEEecCCchhhh-HhcCCCcccEEEEEeCCeeeeeeeCCCCHHHHHHHHHHHh
Q psy5679 71 SCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIA-REFEVQAVPTVIGFRNGDPVDTVVGNADQDVIQTLVSKLS 147 (149)
Q Consensus 71 ~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~-~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~ 147 (149)
.|+.|+++.-.+. .+..-+++-.||...- ++.. .-..-...|.+.+ ||+.+ .+.+.++++|++.+
T Consensus 20 dcpf~qr~~m~L~---~k~~~f~vttVd~~~k-p~~f~~~sp~~~~P~l~~--d~~~~------tDs~~Ie~~Lee~l 85 (221)
T KOG1422|consen 20 DCPFCQRLFMTLE---LKGVPFKVTTVDLSRK-PEWFLDISPGGKPPVLKF--DEKWV------TDSDKIEEFLEEKL 85 (221)
T ss_pred CChhHHHHHHHHH---HcCCCceEEEeecCCC-cHHHHhhCCCCCCCeEEe--CCcee------ccHHHHHHHHHHhc
Confidence 4888888877776 2222378889999877 6555 4445567777766 66443 46677777777654
No 281
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=81.72 E-value=8.2 Score=26.54 Aligned_cols=63 Identities=17% Similarity=0.255 Sum_probs=40.5
Q ss_pred CCCCEEEEEeCCCChhHHhhhHHHHHHHhhcCCceEEEEEecCCchhhhHhcCCCcccEEEEEeCCee
Q psy5679 59 GRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTVIGFRNGDP 126 (149)
Q Consensus 59 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~~i~~~Pt~~~~~~g~~ 126 (149)
+++..+.+|+.+.|+.|.++.=.+++..-. +.+..+|..+..+++.+..-...+|++.- +|..
T Consensus 6 ~~~~~~~Ly~~~~s~~~~rv~~~L~e~gl~---~e~~~v~~~~~~~~~~~~nP~g~VPvL~~--~g~~ 68 (211)
T PRK09481 6 NKRSVMTLFSGPTDIYSHQVRIVLAEKGVS---VEIEQVEKDNLPQDLIDLNPYQSVPTLVD--RELT 68 (211)
T ss_pred CCCCeeEEeCCCCChhHHHHHHHHHHCCCC---CEEEeCCcccCCHHHHHhCCCCCCCEEEE--CCEE
Confidence 445556677778999999998777765333 45566665443134555445668999964 5543
No 282
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=81.49 E-value=9.1 Score=22.93 Aligned_cols=66 Identities=14% Similarity=0.271 Sum_probs=39.8
Q ss_pred CCChhHHhhhHHHHHHHhhcCCceEEEEEecCCchhhhHhcCCCcccEEEEEeCCeeeeeeeCCCCHHHHHHHHHHH
Q psy5679 70 PSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTVIGFRNGDPVDTVVGNADQDVIQTLVSKL 146 (149)
Q Consensus 70 ~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~ 146 (149)
.+|++|++++=.+.+..-. ..+..+|..+...++.+..-...+|++.- +|..+ .+-..+.++|.+.
T Consensus 20 g~cpf~~rvrl~L~eKgi~---ye~~~vd~~~~p~~~~~~nP~g~vPvL~~--~~~~i------~eS~~I~eYLde~ 85 (91)
T cd03061 20 GNCPFCQRLFMVLWLKGVV---FNVTTVDMKRKPEDLKDLAPGTQPPFLLY--NGEVK------TDNNKIEEFLEET 85 (91)
T ss_pred CCChhHHHHHHHHHHCCCc---eEEEEeCCCCCCHHHHHhCCCCCCCEEEE--CCEEe------cCHHHHHHHHHHH
Confidence 4699999998777665222 45566666655134444445678996653 55443 3455566666654
No 283
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=80.42 E-value=8.3 Score=28.96 Aligned_cols=78 Identities=10% Similarity=0.213 Sum_probs=49.0
Q ss_pred CChhHHhhhH----HHHHHHhhcCC----ceEEEEEecCCch--hhhHhcCCCc--ccEEEEEeCCeeeeeeeCCCCHHH
Q psy5679 71 SCGFCKQLEP----KISTVSETTSG----VEFVKINVENGGG--EIAREFEVQA--VPTVIGFRNGDPVDTVVGNADQDV 138 (149)
Q Consensus 71 ~C~~C~~~~~----~l~~~~~~~~~----v~~~~vd~~~~~~--~~~~~~~i~~--~Pt~~~~~~g~~~~~~~g~~~~~~ 138 (149)
.||.|-+..- .+.++.+.+.. +++..+-|--|++ .--..+|+.+ -|...+|.+|+.+.+..+..-.++
T Consensus 263 aCP~CGR~~~dv~~~~~~~~~~~~~~~~pl~VAVMGCVVNGPGEak~AdiGia~~~~~~~~~f~~g~~~~~~~~~~~~ee 342 (361)
T COG0821 263 ACPTCGRTEFDVIQTLNEVEQRLEHLKTPLKVAVMGCVVNGPGEAKHADIGIAGGGKGSGPVFVKGEIIKKLPEEDIVEE 342 (361)
T ss_pred ECCCCCceeehHHHHHHHHHHHhhccCCCceEEEEEeEecCCcchhccceeeecCCCCeeEEEECCeEEEecChhhHHHH
Confidence 4888854433 33344444332 6666666655532 2223456553 689999999999988887666778
Q ss_pred HHHHHHHHhc
Q psy5679 139 IQTLVSKLSQ 148 (149)
Q Consensus 139 l~~~i~~~~~ 148 (149)
+...|++..+
T Consensus 343 l~~~i~~~~~ 352 (361)
T COG0821 343 LEALIEAYAE 352 (361)
T ss_pred HHHHHHHHHH
Confidence 8877776643
No 284
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=80.17 E-value=12 Score=23.48 Aligned_cols=83 Identities=10% Similarity=0.081 Sum_probs=48.3
Q ss_pred EEEEe-CCCChhHHhhhHHHHHHHhhcCC--ceEEEEEecCCch-----------hhhHhcCCCcc-cEEEEE-eCCeee
Q psy5679 64 LAYFF-KPSCGFCKQLEPKISTVSETTSG--VEFVKINVENGGG-----------EIAREFEVQAV-PTVIGF-RNGDPV 127 (149)
Q Consensus 64 vv~f~-~~~C~~C~~~~~~l~~~~~~~~~--v~~~~vd~~~~~~-----------~~~~~~~i~~~-Pt~~~~-~~g~~~ 127 (149)
+|.|. +...+.=+.....|.+-...+.+ +.++.+--+.... .+.++|++..- -+++++ +||...
T Consensus 13 lvv~aps~~d~~~~~q~~~L~~~~~~l~eRdi~v~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~f~~vLiGKDG~vK 92 (118)
T PF13778_consen 13 LVVFAPSADDPRYQQQLEELQNNRCGLDERDIVVIVITGDGARSPGKPLSPEDIQALRKRLRIPPGGFTVVLIGKDGGVK 92 (118)
T ss_pred EEEECCCCCCHHHHHHHHHHHhhhhccccCceEEEEEeCCccccccCcCCHHHHHHHHHHhCCCCCceEEEEEeCCCcEE
Confidence 34343 33445545555555553334433 5554442222212 67788886532 244444 899887
Q ss_pred eeeeCCCCHHHHHHHHHHH
Q psy5679 128 DTVVGNADQDVIQTLVSKL 146 (149)
Q Consensus 128 ~~~~g~~~~~~l~~~i~~~ 146 (149)
.++....+.++|-..|...
T Consensus 93 ~r~~~p~~~~~lf~~ID~M 111 (118)
T PF13778_consen 93 LRWPEPIDPEELFDTIDAM 111 (118)
T ss_pred EecCCCCCHHHHHHHHhCC
Confidence 7888889999998888653
No 285
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=80.02 E-value=7.8 Score=29.31 Aligned_cols=76 Identities=11% Similarity=0.245 Sum_probs=44.8
Q ss_pred ChhHH----hhhHHHHHHHhhcCC----ceEEEEEecCC--chhhhHhcCCCc-ccEEEEEeCCeeeeeeeCCCCHHHHH
Q psy5679 72 CGFCK----QLEPKISTVSETTSG----VEFVKINVENG--GGEIAREFEVQA-VPTVIGFRNGDPVDTVVGNADQDVIQ 140 (149)
Q Consensus 72 C~~C~----~~~~~l~~~~~~~~~----v~~~~vd~~~~--~~~~~~~~~i~~-~Pt~~~~~~g~~~~~~~g~~~~~~l~ 140 (149)
||-|. +......++.+.+.+ +++..+-|--| +......+|+.+ -+..++|++|+.+....+..-.++|.
T Consensus 271 CPgCgR~~~D~~~la~~vee~~~~~~~PlkIAVmGC~VNgpGEa~~aDIGIaG~~~~~~vf~~Gk~v~kv~~~~~~~~l~ 350 (360)
T PRK00366 271 CPTCGRTEFDVIQELAEVEQRLEHIKMPLKVAVMGCVVNGPGEAKEADIGIAGGNPKGPVFVDGEKIKTLPEENIVEELE 350 (360)
T ss_pred CCCCCCCcccHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCchhhCcEeEecCCCceEEEECCEEeeeeChHhHHHHHH
Confidence 55553 334444555555554 66777666423 223445667764 45677889999988777644455555
Q ss_pred HHHHHHh
Q psy5679 141 TLVSKLS 147 (149)
Q Consensus 141 ~~i~~~~ 147 (149)
+.|++..
T Consensus 351 ~~i~~~~ 357 (360)
T PRK00366 351 AEIEAYA 357 (360)
T ss_pred HHHHHHH
Confidence 5555443
No 286
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=79.84 E-value=3.2 Score=25.92 Aligned_cols=50 Identities=10% Similarity=0.307 Sum_probs=35.7
Q ss_pred ChhHHhhhHHHHHHHhhcCCceEEEEEecCCchhhhHhcC--CCcccEEEEE
Q psy5679 72 CGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFE--VQAVPTVIGF 121 (149)
Q Consensus 72 C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~~--i~~~Pt~~~~ 121 (149)
|++|..++..|.-.-..-..+.+.+|+....-.++....| -++.|++++-
T Consensus 24 Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~RPR~~vi~llGE~~QslPvLVL~ 75 (112)
T PF11287_consen 24 CPHCAAIEGLLASFPDLRERLDVRRVDFPRPRQAVIALLGEANQSLPVLVLA 75 (112)
T ss_pred CCchHHHHhHHhhChhhhhcccEEEeCCCCchHHHHHHhChhccCCCEEEeC
Confidence 9999988887765444433488899998877234555554 5799999875
No 287
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=77.80 E-value=3.7 Score=25.62 Aligned_cols=33 Identities=15% Similarity=0.337 Sum_probs=23.1
Q ss_pred EEEEeCCCChhHHhhhHHHHHHHhhcCCceEEEEEecC
Q psy5679 64 LAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVEN 101 (149)
Q Consensus 64 vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~ 101 (149)
+..|+.+.|..|++....|++- ++.|-.+|..+
T Consensus 2 i~iy~~p~C~~crkA~~~L~~~-----gi~~~~~d~~~ 34 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEAA-----GHEVEVRDLLT 34 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-----CCCcEEeehhc
Confidence 4578899999999998777665 34445555443
No 288
>KOG0324|consensus
Probab=77.18 E-value=1.1 Score=31.15 Aligned_cols=54 Identities=13% Similarity=0.162 Sum_probs=43.0
Q ss_pred EEEeCCCChhHHhhhHHHHHHHhhcCC--ceEEEEEecCCchhhhHhcCCCcccEEE
Q psy5679 65 AYFFKPSCGFCKQLEPKISTVSETTSG--VEFVKINVENGGGEIAREFEVQAVPTVI 119 (149)
Q Consensus 65 v~f~~~~C~~C~~~~~~l~~~~~~~~~--v~~~~vd~~~~~~~~~~~~~i~~~Pt~~ 119 (149)
|+...+. -.+..++..+++++++|++ ..++.=||++...++|.++.-+.+|.++
T Consensus 78 I~lG~Td-~~~~~v~~~le~L~~ey~G~~YhL~~kNCNHFsn~la~~Ltgk~IP~wi 133 (214)
T KOG0324|consen 78 ILLGSTD-LTEDDVRRILEELSEEYRGNSYHLLTKNCNHFSNELALQLTGKKIPSWV 133 (214)
T ss_pred EEecCCC-CCHHHHHHHHHHHHhhcCCceehhhhhccchhHHHHHHHHcCCCccHHH
Confidence 3444444 4568889999999999998 7888889998877889999888888654
No 289
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=76.52 E-value=14 Score=22.16 Aligned_cols=73 Identities=21% Similarity=0.289 Sum_probs=40.6
Q ss_pred EeCC-CChhHHhhhH------HHH-HHHhhcCC--ceEEEEEecCCc-----hhhhHhc--CCCcccEEEEEeCCeeeee
Q psy5679 67 FFKP-SCGFCKQLEP------KIS-TVSETTSG--VEFVKINVENGG-----GEIAREF--EVQAVPTVIGFRNGDPVDT 129 (149)
Q Consensus 67 f~~~-~C~~C~~~~~------~l~-~~~~~~~~--v~~~~vd~~~~~-----~~~~~~~--~i~~~Pt~~~~~~g~~~~~ 129 (149)
|++. -|+.|..+-. .|+ .+.++|++ +.+..||+.+.. ..++++. +-.-+|.+++ +|+.+
T Consensus 3 YGAe~~CASCVn~PsSkeTyeWL~aal~RKyp~~~f~~~YiDi~~p~~~~~~~~~a~~I~ede~fYPlV~i--~~eiV-- 78 (93)
T PF07315_consen 3 YGAEVICASCVNAPSSKETYEWLEAALKRKYPDQPFEFTYIDIENPPENDHDQQFAERILEDELFYPLVVI--NDEIV-- 78 (93)
T ss_dssp EE-SS--GGGSSS--HHHHHHHHHHHHHHH-TTS-EEEEEEETTT----HHHHHHHHHHHTTSS-SSEEEE--TTEEE--
T ss_pred ccccccchhhcCCCCchhHHHHHHHHHhCcCCCCceEEEEEecCCCCccHHHHHHHHHHHhcccccceEEE--CCEEE--
Confidence 4443 5888876533 222 45778998 999999997661 1333333 2346898888 89885
Q ss_pred eeCCCCHHHHHHHH
Q psy5679 130 VVGNADQDVIQTLV 143 (149)
Q Consensus 130 ~~g~~~~~~l~~~i 143 (149)
-.|......+-..|
T Consensus 79 ~EGnp~LK~I~~~~ 92 (93)
T PF07315_consen 79 AEGNPQLKDIYEEM 92 (93)
T ss_dssp EESS--HHHHHHHH
T ss_pred ecCCccHHHHHHhh
Confidence 45666666666554
No 290
>KOG0912|consensus
Probab=76.23 E-value=12 Score=27.81 Aligned_cols=95 Identities=14% Similarity=0.183 Sum_probs=58.9
Q ss_pred EEEecchhhHHHHHcCCCCEEEEEeCCCChhHHh-hhHHH-HHHHhhcCCceEEEEEecCCchhhhHhcC--CCcccEEE
Q psy5679 44 YLIIEKIDDFKQTIRGRNPVLAYFFKPSCGFCKQ-LEPKI-STVSETTSGVEFVKINVENGGGEIAREFE--VQAVPTVI 119 (149)
Q Consensus 44 v~~i~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~-~~~~l-~~~~~~~~~v~~~~vd~~~~~~~~~~~~~--i~~~Pt~~ 119 (149)
|.+++ -++.+++...+.|.+|+|..+......+ +...+ .++-.+-..++++..|.... ..-...+| -...|.+.
T Consensus 212 VREiT-FeN~EELtEEGlPflILf~~kdD~~s~k~F~~aI~ReL~~e~~~in~l~ADG~~f-~hpL~HlgKs~~DLPvia 289 (375)
T KOG0912|consen 212 VREIT-FENAEELTEEGLPFLILFRKKDDKESEKIFKNAIARELDDETLAINFLTADGKVF-KHPLRHLGKSPDDLPVIA 289 (375)
T ss_pred hhhhh-hccHHHHhhcCCceEEEEecCCcccHHHHHHHHHHHHhhhhhhccceeecCccee-cchHHHhCCCcccCcEEE
Confidence 66776 4788888889999999999987765533 33322 23322222389999998877 55555555 33567665
Q ss_pred E--------EeCCeeeeeeeCCCCHHHHHHHHHHH
Q psy5679 120 G--------FRNGDPVDTVVGNADQDVIQTLVSKL 146 (149)
Q Consensus 120 ~--------~~~g~~~~~~~g~~~~~~l~~~i~~~ 146 (149)
+ |++++.+ ..+..|.++|..+
T Consensus 290 IDsF~Hmylfp~f~di------~~pGkLkqFv~DL 318 (375)
T KOG0912|consen 290 IDSFRHMYLFPDFNDI------NIPGKLKQFVADL 318 (375)
T ss_pred eeccceeeecCchhhh------cCccHHHHHHHHH
Confidence 4 2333222 3344677776654
No 291
>COG3411 Ferredoxin [Energy production and conversion]
Probab=76.21 E-value=8.9 Score=21.37 Aligned_cols=31 Identities=13% Similarity=0.159 Sum_probs=24.6
Q ss_pred cccEEEEEeCCeeeeeeeCCCCHHHHHHHHHHHhc
Q psy5679 114 AVPTVIGFRNGDPVDTVVGNADQDVIQTLVSKLSQ 148 (149)
Q Consensus 114 ~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~~ 148 (149)
.-|++++|.+| ..|.+ .+.+.....+++++.
T Consensus 16 ~gPvl~vYpeg---vWY~~-V~p~~a~rIv~~hl~ 46 (64)
T COG3411 16 DGPVLVVYPEG---VWYTR-VDPEDARRIVQSHLL 46 (64)
T ss_pred cCCEEEEecCC---eeEec-cCHHHHHHHHHHHHh
Confidence 45999999999 33444 899999999998864
No 292
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=74.60 E-value=25 Score=24.27 Aligned_cols=86 Identities=23% Similarity=0.264 Sum_probs=47.2
Q ss_pred CCCEEEEEeC-CCChhHHhhhHHHHHHHhhcCC--ceEEEEEecCC---------------------------chhhhHh
Q psy5679 60 RNPVLAYFFK-PSCGFCKQLEPKISTVSETTSG--VEFVKINVENG---------------------------GGEIARE 109 (149)
Q Consensus 60 ~~~~vv~f~~-~~C~~C~~~~~~l~~~~~~~~~--v~~~~vd~~~~---------------------------~~~~~~~ 109 (149)
++.+++.||- +--+-|-.....+.+...++.. +.++.+.+|.. ..++++.
T Consensus 33 gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g~eVigvS~Ds~fsH~aW~~~~~~~~gi~~i~~PmiaD~~~~vs~~ 112 (194)
T COG0450 33 GKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRGVEVIGVSTDSVFSHKAWKATIREAGGIGKIKFPMIADPKGEIARA 112 (194)
T ss_pred CcEEEEEeccCCCCccCcchHHHHHhhhHHHHHcCCEEEEEecCcHHHHHHHHhcHHhcCCccceecceEEcCchhHHHH
Confidence 4554444442 2334454444555555555543 77777776643 1456777
Q ss_pred cCCCccc-------EEEEEeCCeeeeeee-----CCCCHHHHHHHHHHH
Q psy5679 110 FEVQAVP-------TVIGFRNGDPVDTVV-----GNADQDVIQTLVSKL 146 (149)
Q Consensus 110 ~~i~~~P-------t~~~~~~g~~~~~~~-----g~~~~~~l~~~i~~~ 146 (149)
||+..-. ++++-++|....... | .+.+++...|+.+
T Consensus 113 ygvl~~~~g~a~R~~FIIDp~g~ir~~~v~~~~iG-Rn~dEilR~idAl 160 (194)
T COG0450 113 YGVLHPEEGLALRGTFIIDPDGVIRHILVNPLTIG-RNVDEILRVIDAL 160 (194)
T ss_pred cCCcccCCCcceeEEEEECCCCeEEEEEEecCCCC-cCHHHHHHHHHHH
Confidence 7765422 344447786543222 4 6778887777654
No 293
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=72.69 E-value=8.6 Score=23.93 Aligned_cols=33 Identities=12% Similarity=0.281 Sum_probs=24.2
Q ss_pred EEEeCCCChhHHhhhHHHHHHHhhcCCceEEEEEecCC
Q psy5679 65 AYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENG 102 (149)
Q Consensus 65 v~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~ 102 (149)
..|+.+.|..|++....|++- ++.+..+|..+.
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~-----~i~~~~~di~~~ 34 (114)
T TIGR00014 2 TIYHNPRCSKSRNTLALLEDK-----GIEPEVVKYLKN 34 (114)
T ss_pred EEEECCCCHHHHHHHHHHHHC-----CCCeEEEeccCC
Confidence 478899999999998877764 455566666544
No 294
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=71.90 E-value=9.4 Score=27.01 Aligned_cols=29 Identities=10% Similarity=0.226 Sum_probs=23.6
Q ss_pred EEEEEeCCCChhHHhhhHHHHHHHhhcCC
Q psy5679 63 VLAYFFKPSCGFCKQLEPKISTVSETTSG 91 (149)
Q Consensus 63 ~vv~f~~~~C~~C~~~~~~l~~~~~~~~~ 91 (149)
.+-.|.-.-||+|-.-.+.|+++...+++
T Consensus 7 ~I~v~sD~vCPwC~ig~~rL~ka~~~~~~ 35 (225)
T COG2761 7 EIDVFSDVVCPWCYIGKRRLEKALAEYPQ 35 (225)
T ss_pred EEEEEeCCcCchhhcCHHHHHHHHHhcCc
Confidence 34444456899999999999999999985
No 295
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=71.62 E-value=15 Score=20.36 Aligned_cols=70 Identities=14% Similarity=0.261 Sum_probs=39.3
Q ss_pred EEEeCCCChhHHhhhHHHHHHHhhcCCceEEEEEecCCchhhhHhcCC-CcccEEEEEeCCeeeeeeeCCCCHHHHHHHH
Q psy5679 65 AYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEV-QAVPTVIGFRNGDPVDTVVGNADQDVIQTLV 143 (149)
Q Consensus 65 v~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~~i-~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i 143 (149)
.+|+.+.|+.|.+..-.+++..-.+ ....++.....+++.+.... ..+|++.. +|..+ ..-..+.++|
T Consensus 2 ~Ly~~~~sp~~~~v~~~l~~~gl~~---~~~~~~~~~~~~~~~~~~p~~~~vP~l~~--~~~~l------~eS~aI~~yL 70 (74)
T cd03058 2 KLLGAWASPFVLRVRIALALKGVPY---EYVEEDLGNKSELLLASNPVHKKIPVLLH--NGKPI------CESLIIVEYI 70 (74)
T ss_pred EEEECCCCchHHHHHHHHHHcCCCC---EEEEeCcccCCHHHHHhCCCCCCCCEEEE--CCEEe------ehHHHHHHHH
Confidence 3567788999999987777664433 34444443321333333333 68998864 55432 2334455555
Q ss_pred HH
Q psy5679 144 SK 145 (149)
Q Consensus 144 ~~ 145 (149)
++
T Consensus 71 ~~ 72 (74)
T cd03058 71 DE 72 (74)
T ss_pred Hh
Confidence 43
No 296
>PF07511 DUF1525: Protein of unknown function (DUF1525); InterPro: IPR011090 This family of proteins is restricted to the Gammaproteobacteria. Members belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=69.99 E-value=15 Score=23.07 Aligned_cols=36 Identities=19% Similarity=0.252 Sum_probs=24.5
Q ss_pred hHhcCCCcccEEEEEeCCeeeeeeeCCCCHHHHHHHHHHH
Q psy5679 107 AREFEVQAVPTVIGFRNGDPVDTVVGNADQDVIQTLVSKL 146 (149)
Q Consensus 107 ~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~ 146 (149)
+..+||+++|.+++ |++.+ .-|..+...-...+...
T Consensus 76 Aw~lgi~k~PAVVf--D~~~V--VYG~tDV~~A~~~~~~~ 111 (114)
T PF07511_consen 76 AWSLGITKYPAVVF--DDRYV--VYGETDVARALARIEQW 111 (114)
T ss_pred HHHhCccccCEEEE--cCCeE--EecccHHHHHHHHHHHH
Confidence 55899999999999 66553 45656665555555443
No 297
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=69.95 E-value=16 Score=20.43 Aligned_cols=57 Identities=11% Similarity=0.107 Sum_probs=35.7
Q ss_pred EEEeCCCChhHHhhhHHHHHHHhhcCCceEEEEEecCC---chhhhHhcCCCcccEEEEEeCCee
Q psy5679 65 AYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENG---GGEIAREFEVQAVPTVIGFRNGDP 126 (149)
Q Consensus 65 v~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~---~~~~~~~~~i~~~Pt~~~~~~g~~ 126 (149)
.+|+.+.++.|+.+.-.+++..-.+ ....+|.... .+++........+|++.. +|..
T Consensus 2 ~ly~~~~s~~~~~v~~~l~~~g~~~---~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~--~~~~ 61 (76)
T cd03050 2 KLYYDLMSQPSRAVYIFLKLNKIPF---EECPIDLRKGEQLTPEFKKINPFGKVPAIVD--GDFT 61 (76)
T ss_pred EEeeCCCChhHHHHHHHHHHcCCCc---EEEEecCCCCCcCCHHHHHhCcCCCCCEEEE--CCEE
Confidence 4677788999998877777664443 4445554321 134455556778999864 5643
No 298
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=69.73 E-value=14 Score=22.93 Aligned_cols=44 Identities=14% Similarity=0.217 Sum_probs=37.0
Q ss_pred cCCCCEEEEEeCCCChhHHhhhHHHHHHHhhcCC--ceEEEEEecCC
Q psy5679 58 RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG--VEFVKINVENG 102 (149)
Q Consensus 58 ~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~--v~~~~vd~~~~ 102 (149)
-+++.++|.=.|+.|+.-. .-..|+++.++|.+ +.++..-|+..
T Consensus 19 y~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~gl~ILaFPcnqF 64 (108)
T PF00255_consen 19 YKGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDKGLEILAFPCNQF 64 (108)
T ss_dssp GTTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGGTEEEEEEEBSTT
T ss_pred cCCCEEEEEecccccCCcc-ccHHHHHHHHHHhcCCeEEEeeehHHh
Confidence 3788899999999999999 55689999999974 88898888754
No 299
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=69.56 E-value=11 Score=23.33 Aligned_cols=33 Identities=12% Similarity=0.281 Sum_probs=23.2
Q ss_pred EEEeCCCChhHHhhhHHHHHHHhhcCCceEEEEEecCC
Q psy5679 65 AYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENG 102 (149)
Q Consensus 65 v~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~ 102 (149)
..|+.+.|..|++....|++- ++.|..+|.-+.
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~-----~i~~~~~di~~~ 34 (112)
T cd03034 2 TIYHNPRCSKSRNALALLEEA-----GIEPEIVEYLKT 34 (112)
T ss_pred EEEECCCCHHHHHHHHHHHHC-----CCCeEEEecccC
Confidence 568889999999988666654 345555665444
No 300
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=66.37 E-value=33 Score=22.31 Aligned_cols=67 Identities=15% Similarity=0.313 Sum_probs=45.3
Q ss_pred CCCCEEEEEeCCCChhHHhhhHHHHHHHhhcCCceEEEEEecCCchhhhHhcCCCc--ccEEEEEeCCeee
Q psy5679 59 GRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQA--VPTVIGFRNGDPV 127 (149)
Q Consensus 59 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~~i~~--~Pt~~~~~~g~~~ 127 (149)
.+++-.|.+|.-.|+.|......+.+.-... .+.|+.+..+.- ..+.+..++.- .=++++.++|+..
T Consensus 5 ~~~p~~vvlyDG~C~lC~~~vrfLi~~D~~~-~i~f~~~q~e~g-~~~l~~~~l~~~~~~s~~~~~~g~~~ 73 (137)
T COG3011 5 MKKPDLVVLYDGVCPLCDGWVRFLIRRDQGG-RIRFAALQSEPG-QALLEAAGLDPEDVDSVLLVEAGQLL 73 (137)
T ss_pred CCCCCEEEEECCcchhHHHHHHHHHHhccCC-cEEEEeccCchh-hhHHhhcCCChhhhheeeEecCCceE
Confidence 4677788899999999999777666552221 188887776655 66666666542 2366666777653
No 301
>TIGR03757 conj_TIGR03757 integrating conjugative element protein, PFL_4709 family. Members of this protein belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=65.41 E-value=19 Score=22.54 Aligned_cols=33 Identities=24% Similarity=0.361 Sum_probs=22.5
Q ss_pred hHhcCCCcccEEEEEeCCeeeeeeeCCCCHHHHHHHH
Q psy5679 107 AREFEVQAVPTVIGFRNGDPVDTVVGNADQDVIQTLV 143 (149)
Q Consensus 107 ~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i 143 (149)
+..|||+++|.+++ |++. ..-|..+...-...+
T Consensus 77 Aw~lGi~k~PAVV~--D~~~--VVYG~~DV~~A~~~~ 109 (113)
T TIGR03757 77 AWQLGVTKIPAVVV--DRRY--VVYGETDVARALALI 109 (113)
T ss_pred HHHcCCccCCEEEE--cCCe--EEecCccHHHHHHHH
Confidence 55899999999999 6654 345655555544444
No 302
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=64.94 E-value=8.6 Score=29.12 Aligned_cols=75 Identities=17% Similarity=0.274 Sum_probs=42.3
Q ss_pred ChhHHhhhHHH----HHHHhhcCC----ceEEEEEecCCchhhhH--hcCCC-ccc-EEEEEeCCeeeeee-eCCCCHHH
Q psy5679 72 CGFCKQLEPKI----STVSETTSG----VEFVKINVENGGGEIAR--EFEVQ-AVP-TVIGFRNGDPVDTV-VGNADQDV 138 (149)
Q Consensus 72 C~~C~~~~~~l----~~~~~~~~~----v~~~~vd~~~~~~~~~~--~~~i~-~~P-t~~~~~~g~~~~~~-~g~~~~~~ 138 (149)
||.|-+..-.+ +++.+.... ++++.+-|--|+|.=++ .||+- +-+ ...+|++|+.+.+. ....-.++
T Consensus 271 CPtCGRt~~Dl~~~~~~ie~~l~~l~~~lkIAVMGCiVNGPGEa~~AD~GiaGgg~g~~~lf~~g~~v~k~~~ee~~vd~ 350 (359)
T PF04551_consen 271 CPTCGRTEFDLQELVAEIEERLKHLKKGLKIAVMGCIVNGPGEAKDADIGIAGGGKGKGILFKKGEVVKKVIPEEEIVDE 350 (359)
T ss_dssp ----TT--SHHHHHHHHHHHHCCCHHCG-EEEEESSTCCCHHHCTTSSEEEE-E-TTCEEEECTTEEEEEE-CSTCHHHH
T ss_pred CCCCCCccchHHHHHHHHHHHHhcCCCCceEEEEeeeecCCchhhhCceeeecCCCCeEEEEECCEEEEecCCHHHHHHH
Confidence 77775444333 344343333 88888888877543333 45555 334 47888999999887 55455677
Q ss_pred HHHHHHHH
Q psy5679 139 IQTLVSKL 146 (149)
Q Consensus 139 l~~~i~~~ 146 (149)
|.+.|+++
T Consensus 351 L~~~I~~~ 358 (359)
T PF04551_consen 351 LIELIEEH 358 (359)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 77777664
No 303
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=64.88 E-value=9.7 Score=25.55 Aligned_cols=22 Identities=23% Similarity=0.431 Sum_probs=17.4
Q ss_pred hhhhHhcCCCcccEEEEEeCCe
Q psy5679 104 GEIAREFEVQAVPTVIGFRNGD 125 (149)
Q Consensus 104 ~~~~~~~~i~~~Pt~~~~~~g~ 125 (149)
...+.++||.++|++++..++.
T Consensus 159 ~~~a~~~gv~g~Ptfvv~~~~~ 180 (193)
T cd03025 159 QKLARELGINGFPTLVLEDDNG 180 (193)
T ss_pred HHHHHHcCCCccCEEEEEeCCe
Confidence 3456688999999999986654
No 304
>PF10865 DUF2703: Domain of unknown function (DUF2703); InterPro: IPR021219 This family of protein has no known function.
Probab=63.99 E-value=13 Score=23.60 Aligned_cols=53 Identities=25% Similarity=0.490 Sum_probs=36.7
Q ss_pred CCChhHHhhhHHHHHHHhh----cC--C--ceEEEEEecCCchhhhHhcCCCcccEEEEEeCCeeee
Q psy5679 70 PSCGFCKQLEPKISTVSET----TS--G--VEFVKINVENGGGEIAREFEVQAVPTVIGFRNGDPVD 128 (149)
Q Consensus 70 ~~C~~C~~~~~~l~~~~~~----~~--~--v~~~~vd~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~ 128 (149)
..|..|......+.+..+. +. + +.+-++.++.. ++..++ -+-|++.+ ||+.+.
T Consensus 13 ~tC~RC~~Tg~~L~~av~~l~~~L~~~Giev~l~~~~l~~~--~~~~~~--~~S~~I~i--nG~piE 73 (120)
T PF10865_consen 13 KTCERCGDTGETLREAVKELAPVLAPLGIEVRLEEIELDEE--EFARQP--LESPTIRI--NGRPIE 73 (120)
T ss_pred CcCCchhhHHHHHHHHHHHHHHHHHhCCcEEEEEEEECChH--HHhhcc--cCCCeeeE--CCEehh
Confidence 3799998887777665555 33 2 66666666655 666666 67788877 888763
No 305
>PRK10387 glutaredoxin 2; Provisional
Probab=62.60 E-value=46 Score=22.57 Aligned_cols=56 Identities=14% Similarity=0.268 Sum_probs=31.2
Q ss_pred EEeCCCChhHHhhhHHHHHHHhhcCCceEEEEEecCCchhhhHhcCCCcccEEEEEeCCee
Q psy5679 66 YFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTVIGFRNGDP 126 (149)
Q Consensus 66 ~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~~i~~~Pt~~~~~~g~~ 126 (149)
+++.+.|++|.++.-.+++..-.| +...++.... ...........+|+++.- +|..
T Consensus 3 Ly~~~~sp~~~kv~~~L~~~gi~y---~~~~~~~~~~-~~~~~~~p~~~VPvL~~~-~g~~ 58 (210)
T PRK10387 3 LYIYDHCPFCVKARMIFGLKNIPV---ELIVLANDDE-ATPIRMIGQKQVPILQKD-DGSY 58 (210)
T ss_pred EEeCCCCchHHHHHHHHHHcCCCe---EEEEcCCCch-hhHHHhcCCcccceEEec-CCeE
Confidence 456778999999987766664333 3333333222 111222234679998542 5543
No 306
>PF08806 Sep15_SelM: Sep15/SelM redox domain; InterPro: IPR014912 Sep15 and SelM are eukaryotic selenoproteins that have a thioredoxin-like domain and a surface accessible active site redox motif []. This suggests that they function as thiol-disulphide isomerases involved in disulphide bond formation in the endoplasmic reticulum []. ; PDB: 2A4H_A 2A2P_A.
Probab=62.25 E-value=17 Score=21.07 Aligned_cols=35 Identities=17% Similarity=0.357 Sum_probs=22.0
Q ss_pred CcccEEEEE-eCCeeeeeee-CCCCHHHHHHHHHHHh
Q psy5679 113 QAVPTVIGF-RNGDPVDTVV-GNADQDVIQTLVSKLS 147 (149)
Q Consensus 113 ~~~Pt~~~~-~~g~~~~~~~-g~~~~~~l~~~i~~~~ 147 (149)
..-|+++++ .+|+.+.+.. ...+.+++.+++.+..
T Consensus 40 G~~P~L~l~d~~g~~~E~i~i~~w~~d~i~efL~~kg 76 (78)
T PF08806_consen 40 GAPPELVLLDEDGEEVERINIEKWKTDEIEEFLNEKG 76 (78)
T ss_dssp S---EEEEE-SSS--SEEEE-SSSSHCHHHHHHHHHT
T ss_pred CCCCEEEEEcCCCCEEEEEEcccCCHHHHHHHHHHhC
Confidence 456899998 4787665444 2379999999998764
No 307
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=62.14 E-value=17 Score=24.23 Aligned_cols=32 Identities=13% Similarity=0.365 Sum_probs=24.7
Q ss_pred EEeCCCChhHHhhhHHHHHHHhhcCC-ceEEEE
Q psy5679 66 YFFKPSCGFCKQLEPKISTVSETTSG-VEFVKI 97 (149)
Q Consensus 66 ~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~v 97 (149)
+|+..-||+|--..+.++++...++- +.+..+
T Consensus 3 ~~~D~~cP~cy~~~~~l~~~~~~~~~~i~~~p~ 35 (192)
T cd03022 3 FYFDFSSPYSYLAHERLPALAARHGATVRYRPI 35 (192)
T ss_pred EEEeCCChHHHHHHHHHHHHHHHhCCeeEEeee
Confidence 46677899999999999999988863 444333
No 308
>KOG1364|consensus
Probab=61.53 E-value=15 Score=27.68 Aligned_cols=53 Identities=11% Similarity=0.242 Sum_probs=39.9
Q ss_pred EEEEEecCCchhhhHhcCCCcccEEEEE--eCCeeeeeeeCCCCHHHHHHHHHHHh
Q psy5679 94 FVKINVENGGGEIAREFEVQAVPTVIGF--RNGDPVDTVVGNADQDVIQTLVSKLS 147 (149)
Q Consensus 94 ~~~vd~~~~~~~~~~~~~i~~~Pt~~~~--~~g~~~~~~~g~~~~~~l~~~i~~~~ 147 (149)
.+..|..+- ..+...|.+..+|.+.++ .-|+.+++..|...++++..-+++++
T Consensus 135 lV~~Dtseg-~~~~~Fy~~~~~P~i~iiDp~Tge~v~~ws~vi~~~~fl~~l~~Fi 189 (356)
T KOG1364|consen 135 LVLDDTSEG-QPFSAFYHISSLPHIAIIDPITGERVKRWSGVIEPEQFLSDLNEFI 189 (356)
T ss_pred EEeeccCCC-CchhhheeccCCceEEEECCchhhhhhhhccccCHHHHHHHHHHHH
Confidence 334444444 788999999999988777 46999999988777777777776654
No 309
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=61.11 E-value=47 Score=22.23 Aligned_cols=30 Identities=17% Similarity=0.251 Sum_probs=24.2
Q ss_pred EEEEE-eCCeeeeeeeCCCCHHHHHHHHHHH
Q psy5679 117 TVIGF-RNGDPVDTVVGNADQDVIQTLVSKL 146 (149)
Q Consensus 117 t~~~~-~~g~~~~~~~g~~~~~~l~~~i~~~ 146 (149)
.++++ ++|+......|..+.+++...|.-+
T Consensus 127 aiiVlDK~G~V~F~k~G~Ls~~Ev~qVi~Ll 157 (160)
T PF09695_consen 127 AIIVLDKQGKVQFVKEGALSPAEVQQVIALL 157 (160)
T ss_pred eEEEEcCCccEEEEECCCCCHHHHHHHHHHH
Confidence 34444 8899999999999999999887654
No 310
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=60.54 E-value=14 Score=23.26 Aligned_cols=26 Identities=12% Similarity=0.344 Sum_probs=20.3
Q ss_pred EEEEeCCCChhHHhhhHHHHHHHhhc
Q psy5679 64 LAYFFKPSCGFCKQLEPKISTVSETT 89 (149)
Q Consensus 64 vv~f~~~~C~~C~~~~~~l~~~~~~~ 89 (149)
+..|+.+.|..|+.....|++-.-.+
T Consensus 3 itiy~~p~C~t~rka~~~L~~~gi~~ 28 (117)
T COG1393 3 ITIYGNPNCSTCRKALAWLEEHGIEY 28 (117)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCc
Confidence 55788999999999998877664444
No 311
>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex. A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane
Probab=59.00 E-value=66 Score=23.23 Aligned_cols=40 Identities=18% Similarity=0.147 Sum_probs=27.1
Q ss_pred hhhHhcCCCcccE--EEEE-eCCeeeeeeeCCCCHHHHHHHHH
Q psy5679 105 EIAREFEVQAVPT--VIGF-RNGDPVDTVVGNADQDVIQTLVS 144 (149)
Q Consensus 105 ~~~~~~~i~~~Pt--~~~~-~~g~~~~~~~g~~~~~~l~~~i~ 144 (149)
++.+.+++...-+ ++++ .+|++.+.-.|..+.+++..+.+
T Consensus 205 ~iRe~Lgi~N~~~GYvyLVD~~grIRWagsG~At~~E~~~L~k 247 (252)
T PF05176_consen 205 DIREALGINNSYVGYVYLVDPNGRIRWAGSGPATPEELESLWK 247 (252)
T ss_pred HHHHHhCCCCCCcCeEEEECCCCeEEeCccCCCCHHHHHHHHH
Confidence 4455666654332 3333 67899888889899999888654
No 312
>COG2101 SPT15 TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription]
Probab=58.68 E-value=48 Score=22.56 Aligned_cols=30 Identities=20% Similarity=0.401 Sum_probs=22.0
Q ss_pred EEEEEeCCeeeeeeeCCCCHHHHHHHHHHHhc
Q psy5679 117 TVIGFRNGDPVDTVVGNADQDVIQTLVSKLSQ 148 (149)
Q Consensus 117 t~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~~ 148 (149)
.+++|..||.+ ..|..+.++..+.++.+..
T Consensus 148 V~LiF~SGK~V--iTGaK~~ed~~~Av~~i~~ 177 (185)
T COG2101 148 VLLLFGSGKLV--ITGAKSEEDAEQAVEKIQS 177 (185)
T ss_pred EEEEecCCcEE--EecCCCHHHHHHHHHHHHH
Confidence 34456788885 6787889999888887643
No 313
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=56.82 E-value=41 Score=20.13 Aligned_cols=34 Identities=12% Similarity=0.267 Sum_probs=21.2
Q ss_pred CceEEEEEecCCchhhhH----hc----CCCcccEEEEEeCCeee
Q psy5679 91 GVEFVKINVENGGGEIAR----EF----EVQAVPTVIGFRNGDPV 127 (149)
Q Consensus 91 ~v~~~~vd~~~~~~~~~~----~~----~i~~~Pt~~~~~~g~~~ 127 (149)
++.|-.+|++.. ++..+ .. +-..+|.+++ +|+.+
T Consensus 30 ~I~f~eiDI~~d-~~~r~em~~~~~~~~g~~tvPQIFi--~~~~i 71 (92)
T cd03030 30 KIEFEEVDISMN-EENRQWMRENVPNENGKPLPPQIFN--GDEYC 71 (92)
T ss_pred CCceEEEecCCC-HHHHHHHHHhcCCCCCCCCCCEEEE--CCEEe
Confidence 488888898766 44333 22 2356788766 66554
No 314
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=56.35 E-value=68 Score=22.56 Aligned_cols=84 Identities=17% Similarity=0.299 Sum_probs=49.2
Q ss_pred cchhhHHHHH-cCCCCEEEEEe-----CCCChhHHhhhHHHH-HHHhhcC-CceEEEEEecCC-----------------
Q psy5679 48 EKIDDFKQTI-RGRNPVLAYFF-----KPSCGFCKQLEPKIS-TVSETTS-GVEFVKINVENG----------------- 102 (149)
Q Consensus 48 ~~~~~~~~~~-~~~~~~vv~f~-----~~~C~~C~~~~~~l~-~~~~~~~-~v~~~~vd~~~~----------------- 102 (149)
.+.-.+.++. .+...+|..|. ...|+-|.-+...+. .+..... ++.|+.|.-.-.
T Consensus 55 ~G~v~L~dLF~Gr~qLivyhfM~~p~~~~~C~gCs~~~D~~~g~l~hL~~rd~tfa~vSraP~~~i~afk~rmGW~~pw~ 134 (211)
T PF05988_consen 55 DGPVSLADLFEGRRQLIVYHFMFGPDWDEGCPGCSFWADHIDGALRHLHARDTTFAVVSRAPLEKIEAFKRRMGWTFPWY 134 (211)
T ss_pred CCcccHHHHcCCCceEEEEeeccCCCCCCCCCchhhhHhhhhhhHHHHHhCCceEEEEeCCCHHHHHHHHHhcCCCceEE
Confidence 3444556666 45555555554 467999999999883 4433332 378877773211
Q ss_pred ---chhhhHhcCC-----CcccEEEEE-eCC-eeeeeee
Q psy5679 103 ---GGEIAREFEV-----QAVPTVIGF-RNG-DPVDTVV 131 (149)
Q Consensus 103 ---~~~~~~~~~i-----~~~Pt~~~~-~~g-~~~~~~~ 131 (149)
+.++...|++ ...|.+-+| ++| ++...+.
T Consensus 135 Ss~gs~Fn~D~~~~~~~~~~~~g~svF~Rdg~~VfhTys 173 (211)
T PF05988_consen 135 SSYGSDFNYDFGVSFDEGGEMPGLSVFLRDGGRVFHTYS 173 (211)
T ss_pred EcCCCcccccccceeccCCCceeEEEEEEcCCEEEEEee
Confidence 2345556666 577877777 555 4444444
No 315
>cd03062 TRX_Fd_Sucrase TRX-like [2Fe-2S] Ferredoxin (Fd) family, Sucrase subfamily; composed of proteins with similarity to a novel plant enzyme, isolated from potato, which contains a Fd-like domain and exhibits sucrolytic activity. The putative active site of the Fd-like domain of the enzyme contains two cysteines and two histidines for possible binding to iron-sulfur clusters, compared to four cysteines present in the active site of Fd.
Probab=56.03 E-value=30 Score=20.84 Aligned_cols=32 Identities=19% Similarity=0.275 Sum_probs=23.5
Q ss_pred CcccEEEEEe--CCeeeeeeeCCCCHHHHHHHHHHHhc
Q psy5679 113 QAVPTVIGFR--NGDPVDTVVGNADQDVIQTLVSKLSQ 148 (149)
Q Consensus 113 ~~~Pt~~~~~--~g~~~~~~~g~~~~~~l~~~i~~~~~ 148 (149)
+.-|++++|+ +|. .| |..+++++...|++++.
T Consensus 51 ~~gp~vvvyP~~~g~---wy-~~v~p~~v~~Iv~~hl~ 84 (97)
T cd03062 51 KFAGNVIIYPKGDGI---WY-GRVTPEHVPPIVDRLIL 84 (97)
T ss_pred CcCCEEEEEeCCCee---EE-eecCHHHHHHHHHHHhc
Confidence 3569999998 662 23 34789999999888764
No 316
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=55.93 E-value=33 Score=18.83 Aligned_cols=45 Identities=16% Similarity=0.185 Sum_probs=26.9
Q ss_pred CCChhHHhhhHHHHHHHhhcCCceEEEEEecCCchhhhHhcCCCcccEEEEEeCCee
Q psy5679 70 PSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTVIGFRNGDP 126 (149)
Q Consensus 70 ~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~~i~~~Pt~~~~~~g~~ 126 (149)
++|++|.++.-.++.. ++.+-.++++.. . + -....+|++.. +|+.
T Consensus 14 s~sp~~~~v~~~L~~~-----~i~~~~~~~~~~-~-~---~p~g~vP~l~~--~g~~ 58 (72)
T cd03054 14 SLSPECLKVETYLRMA-----GIPYEVVFSSNP-W-R---SPTGKLPFLEL--NGEK 58 (72)
T ss_pred CCCHHHHHHHHHHHhC-----CCceEEEecCCc-c-c---CCCcccCEEEE--CCEE
Confidence 5899999998766653 444444444433 1 1 12347998865 5654
No 317
>KOG3029|consensus
Probab=55.22 E-value=85 Score=23.33 Aligned_cols=57 Identities=21% Similarity=0.384 Sum_probs=33.8
Q ss_pred CCCEEEEEeCCCChhHHhhhHHHHHHHhhcCCc--eEEEEEecCCchhhhHhcCCCcccEEEEEeCCe
Q psy5679 60 RNPVLAYFFKPSCGFCKQLEPKISTVSETTSGV--EFVKINVENGGGEIAREFEVQAVPTVIGFRNGD 125 (149)
Q Consensus 60 ~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~v--~~~~vd~~~~~~~~~~~~~i~~~Pt~~~~~~g~ 125 (149)
...-+++|-=..||.|-+++..|. |.++ .++.||--.- .++.-. ..+.+|-++. +|+
T Consensus 87 s~L~l~LyQyetCPFCcKVrAFLD-----yhgisY~VVEVnpV~r-~eIk~S-sykKVPil~~--~Ge 145 (370)
T KOG3029|consen 87 SPLDLVLYQYETCPFCCKVRAFLD-----YHGISYAVVEVNPVLR-QEIKWS-SYKKVPILLI--RGE 145 (370)
T ss_pred CCceEEEEeeccCchHHHHHHHHh-----hcCCceEEEEecchhh-hhcccc-ccccccEEEe--ccc
Confidence 334566666678999999986554 3343 3444443222 233222 5678998877 465
No 318
>KOG0868|consensus
Probab=55.19 E-value=6.4 Score=26.92 Aligned_cols=66 Identities=17% Similarity=0.371 Sum_probs=37.3
Q ss_pred CCCCEEEEEeCCCChhHHhhhHHHHHHHhhcCCceEEEEEecCCchhhhHhcCCCcccEEEEEeCCeee
Q psy5679 59 GRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTVIGFRNGDPV 127 (149)
Q Consensus 59 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~ 127 (149)
..++++--+|.+.|.+=.+..=.++.+-=++.-+++++-. ++.+.++.+---...+|++++ ||-.+
T Consensus 3 ~~KpiLYSYWrSSCswRVRiALaLK~iDYey~PvnLlk~~-~q~~~ef~~iNPm~kVP~L~i--~g~tl 68 (217)
T KOG0868|consen 3 AAKPILYSYWRSSCSWRVRIALALKGIDYEYKPVNLLKEE-DQSDSEFKEINPMEKVPTLVI--DGLTL 68 (217)
T ss_pred cccchhhhhhcccchHHHHHHHHHcCCCcceeehhhhcch-hhhhhHHhhcCchhhCCeEEE--CCEEe
Confidence 4578888888888888666655555443222223333321 111134444334678999988 77543
No 319
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=54.74 E-value=67 Score=22.03 Aligned_cols=55 Identities=15% Similarity=0.234 Sum_probs=29.7
Q ss_pred EEeCCCChhHHhhhHHHHHHHhhcCCceEEEEEecCCchhhhHhcCCCcccEEEEEeCCe
Q psy5679 66 YFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTVIGFRNGD 125 (149)
Q Consensus 66 ~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~~i~~~Pt~~~~~~g~ 125 (149)
+++...||+|+++.-.+.+..-.+ ..+.++.+.. ....+......+|++.. .+|.
T Consensus 2 Ly~~~~sp~~~kvr~~L~~~gl~~---e~~~~~~~~~-~~~~~~np~g~vP~l~~-~~g~ 56 (209)
T TIGR02182 2 LYIYDHCPFCVRARMIFGLKNIPV---EKHVLLNDDE-ETPIRMIGAKQVPILQK-DDGR 56 (209)
T ss_pred eecCCCCChHHHHHHHHHHcCCCe---EEEECCCCcc-hhHHHhcCCCCcceEEe-eCCe
Confidence 355677999998877666653333 2222222222 22223333567998753 2554
No 320
>PF14424 Toxin-deaminase: The BURPS668_1122 family of deaminases
Probab=54.57 E-value=56 Score=21.07 Aligned_cols=26 Identities=15% Similarity=0.423 Sum_probs=19.0
Q ss_pred CCChhHHhhhHHHHHHHhhcCCceEEEEE
Q psy5679 70 PSCGFCKQLEPKISTVSETTSGVEFVKIN 98 (149)
Q Consensus 70 ~~C~~C~~~~~~l~~~~~~~~~v~~~~vd 98 (149)
+-|..|.. +++++...||++.+..++
T Consensus 106 ~pC~SC~~---vi~qF~~~~pni~~~v~~ 131 (133)
T PF14424_consen 106 PPCESCSN---VIEQFKKDFPNIKVNVVY 131 (133)
T ss_pred CcChhHHH---HHHHHHHHCCCcEEEEec
Confidence 45888875 777888899986665543
No 321
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=54.49 E-value=26 Score=23.62 Aligned_cols=25 Identities=8% Similarity=0.235 Sum_probs=22.0
Q ss_pred EEeCCCChhHHhhhHHHHHHHhhcC
Q psy5679 66 YFFKPSCGFCKQLEPKISTVSETTS 90 (149)
Q Consensus 66 ~f~~~~C~~C~~~~~~l~~~~~~~~ 90 (149)
+|+..-||+|--..+.+.++.+.++
T Consensus 3 ~~~D~~cP~cyl~~~~l~~~~~~~~ 27 (201)
T cd03024 3 IWSDVVCPWCYIGKRRLEKALAELG 27 (201)
T ss_pred EEecCcCccHHHHHHHHHHHHHhCC
Confidence 4667789999999999999999985
No 322
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=54.24 E-value=37 Score=18.87 Aligned_cols=56 Identities=18% Similarity=0.193 Sum_probs=34.6
Q ss_pred EEeCCCChhHHhhhHHHHHHHhhcCCceEEEEEec---CCchhhhHhcCCCcccEEEEEeCCee
Q psy5679 66 YFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVE---NGGGEIAREFEVQAVPTVIGFRNGDP 126 (149)
Q Consensus 66 ~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~---~~~~~~~~~~~i~~~Pt~~~~~~g~~ 126 (149)
+|+.+.|+.|.+..-.+++..-. +.+..+|.. .. +++....-...+|++..- +|..
T Consensus 3 Ly~~~~~~~~~~~~~~l~~~gi~---~~~~~v~~~~~~~~-~~~~~~nP~~~vP~L~~~-~g~~ 61 (75)
T cd03044 3 LYTYPGNPRSLKILAAAKYNGLD---VEIVDFQPGKENKT-PEFLKKFPLGKVPAFEGA-DGFC 61 (75)
T ss_pred EecCCCCccHHHHHHHHHHcCCc---eEEEecccccccCC-HHHHHhCCCCCCCEEEcC-CCCE
Confidence 56777889999887766655322 455555553 23 445554556789999652 4543
No 323
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=53.21 E-value=16 Score=25.39 Aligned_cols=27 Identities=33% Similarity=0.837 Sum_probs=24.4
Q ss_pred EEEEEeCCCChhHHhhhHHHHHHHhhc
Q psy5679 63 VLAYFFKPSCGFCKQLEPKISTVSETT 89 (149)
Q Consensus 63 ~vv~f~~~~C~~C~~~~~~l~~~~~~~ 89 (149)
.|.+.+.|-|++|--..|.++++....
T Consensus 3 ~lhYifDPmCgWCyGa~Pll~~l~~~~ 29 (212)
T COG3531 3 TLHYIFDPMCGWCYGAAPLLEALSAQP 29 (212)
T ss_pred eeEEecCcchhhhhCccHHHHHHHhcC
Confidence 477889999999999999999998875
No 324
>PF00352 TBP: Transcription factor TFIID (or TATA-binding protein, TBP); InterPro: IPR000814 The TATA-box binding protein (TBP) is required for the initiation of transcription by RNA polymerases I, II and III, from promoters with or without a TATA box [, ]. TBP associates with a host of factors, including the general transcription factors TFIIA, -B, -D, -E, and -H, to form huge multi-subunit pre-initiation complexes on the core promoter. Through its association with different transcription factors, TBP can initiate transcription from different RNA polymerases. There are several related TBPs, including TBP-like (TBPL) proteins []. The C-terminal core of TBP (~180 residues) is highly conserved and contains two 77-amino acid repeats that produce a saddle-shaped structure that straddles the DNA; this region binds to the TATA box and interacts with transcription factors and regulatory proteins []. By contrast, the N-terminal region varies in both length and sequence.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0006367 transcription initiation from RNA polymerase II promoter; PDB: 1D3U_A 1PCZ_B 1AIS_A 1NGM_A 1TBP_A 1TBA_B 1YTB_A 1RM1_A 1YTF_A 1NH2_A ....
Probab=53.16 E-value=26 Score=20.52 Aligned_cols=60 Identities=18% Similarity=0.290 Sum_probs=34.8
Q ss_pred HHHHHHhhcCCceEEEEEecCCchhhhHhcCCCcccEEEEEeCCeeeeeeeCCCCHHHHHHHHHHHh
Q psy5679 81 KISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTVIGFRNGDPVDTVVGNADQDVIQTLVSKLS 147 (149)
Q Consensus 81 ~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~ 147 (149)
.|++++..+++.. .|-+.. +.+.-+.. ..-.++.+|..|+.+ ..|..+.+++...++.++
T Consensus 20 dL~~la~~~~~~~---YePe~f-pgl~~r~~-~p~~t~~IF~sGki~--itGaks~~~~~~a~~~i~ 79 (86)
T PF00352_consen 20 DLEELAEELENVE---YEPERF-PGLIYRLR-NPKATVLIFSSGKIV--ITGAKSEEEAKKAIEKIL 79 (86)
T ss_dssp -HHHHHHHSTTEE---EETTTE-SSEEEEET-TTTEEEEEETTSEEE--EEEESSHHHHHHHHHHHH
T ss_pred CHHHHHhhccCcE---EeeccC-CeEEEeec-CCcEEEEEEcCCEEE--EEecCCHHHHHHHHHHHH
Confidence 4556666654332 233333 33322222 124588889999984 667678888888887764
No 325
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=51.44 E-value=26 Score=24.13 Aligned_cols=37 Identities=11% Similarity=0.287 Sum_probs=23.1
Q ss_pred hhHhcCCCcccEEEEEeC-CeeeeeeeCCCCHHHHHHHH
Q psy5679 106 IAREFEVQAVPTVIGFRN-GDPVDTVVGNADQDVIQTLV 143 (149)
Q Consensus 106 ~~~~~~i~~~Pt~~~~~~-g~~~~~~~g~~~~~~l~~~i 143 (149)
-+.+.|+.++|++++-.+ |+ ...+-|.-..+.+++++
T Consensus 171 ~A~~~Gv~GVP~fvv~~~~~~-~e~fwG~Drl~~~~~~l 208 (209)
T cd03021 171 EALKYGAFGLPWIVVTNDKGK-TEMFFGSDRFEQVADFL 208 (209)
T ss_pred HHHHcCCCCCCEEEEEcCCCC-ccceecCCcHHHHHHHh
Confidence 445679999999988532 32 12556644555555554
No 326
>PRK10853 putative reductase; Provisional
Probab=50.94 E-value=23 Score=22.24 Aligned_cols=32 Identities=9% Similarity=0.230 Sum_probs=22.6
Q ss_pred EEEEeCCCChhHHhhhHHHHHHHhhcCCceEEEEEec
Q psy5679 64 LAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVE 100 (149)
Q Consensus 64 vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~ 100 (149)
+..|+.+.|..|++....|++- ++.+-.+|.-
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~-----~i~~~~~d~~ 33 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQ-----GIDYRFHDYR 33 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHc-----CCCcEEeehc
Confidence 4567789999999999877764 3444555543
No 327
>PF03227 GILT: Gamma interferon inducible lysosomal thiol reductase (GILT); InterPro: IPR004911 This family includes the two characterised human gamma-interferon-inducible lysosomal thiol reductase (GILT) sequences [, ]. It also contains several other eukaryotic putative proteins with similarity to GILT []. The aligned region contains three conserved cysteine residues. In addition, the two GILT sequences possess a C-X(2)-C motif that is shared by some of the other sequences in the family. This motif is thought to be associated with disulphide bond reduction.
Probab=50.59 E-value=46 Score=20.41 Aligned_cols=21 Identities=10% Similarity=0.542 Sum_probs=15.5
Q ss_pred EEEEeCCCChhHHhh-hHHHHH
Q psy5679 64 LAYFFKPSCGFCKQL-EPKIST 84 (149)
Q Consensus 64 vv~f~~~~C~~C~~~-~~~l~~ 84 (149)
|-+||.+-||.|+++ ...|..
T Consensus 3 v~vyyESlCPd~~~fi~~~L~p 24 (108)
T PF03227_consen 3 VEVYYESLCPDCRRFITNQLFP 24 (108)
T ss_pred EEEEEEecCHhHHHHHHHHHHH
Confidence 557888999999987 444544
No 328
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=49.59 E-value=30 Score=22.01 Aligned_cols=23 Identities=13% Similarity=0.432 Sum_probs=18.7
Q ss_pred EEEEEeCCCChhHHhhhHHHHHH
Q psy5679 63 VLAYFFKPSCGFCKQLEPKISTV 85 (149)
Q Consensus 63 ~vv~f~~~~C~~C~~~~~~l~~~ 85 (149)
.+.+|+.+.|..|++....|++-
T Consensus 2 ~i~iY~~p~Cst~RKA~~~L~~~ 24 (126)
T TIGR01616 2 TIIFYEKPGCANNARQKAALKAS 24 (126)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHC
Confidence 35678889999999998877765
No 329
>PF07700 HNOB: Heme NO binding; InterPro: IPR011644 This ligand-binding domain is found in soluble guanylate cyclases. In soluble guanylate cyclases this domain binds heme via a covalent linkage to histidine []. Soluble guanylate cyclases are nitric oxide-responsive signaling proteins.; GO: 0020037 heme binding; PDB: 3TFE_A 2O0C_B 3TFA_A 2O09_B 2O0G_B 3L6J_A 3TFG_B 3TF8_A 3TFF_A 3TF9_B ....
Probab=49.47 E-value=44 Score=22.29 Aligned_cols=41 Identities=17% Similarity=0.224 Sum_probs=32.3
Q ss_pred CCCEEEEEeCCCChhHHhhhHHHHHHHhhcCC--ceEEEEEec
Q psy5679 60 RNPVLAYFFKPSCGFCKQLEPKISTVSETTSG--VEFVKINVE 100 (149)
Q Consensus 60 ~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~--v~~~~vd~~ 100 (149)
++-..+.++++.++.|.-+...++.+|+.+.+ +.+-.+++.
T Consensus 127 ~~~l~l~Y~S~R~gl~~~~~Gli~g~A~~f~~~~v~i~~~~~~ 169 (171)
T PF07700_consen 127 DNELTLHYRSPRPGLCPYVIGLIRGAAKHFFELDVEIEHVECM 169 (171)
T ss_dssp TTEEEEEEEESSSSTHHHHHHHHHHHHHHTTEEEEEEEEEECC
T ss_pred CCEEEEEEECCCcCHHHHHHHHHHHHHHHhCCCCeEEEEeccc
Confidence 45567888888899999999999999999976 555555443
No 330
>KOG0911|consensus
Probab=49.21 E-value=37 Score=24.06 Aligned_cols=53 Identities=23% Similarity=0.469 Sum_probs=35.7
Q ss_pred CCCChhHHhhhHHHHHHHhhcCCceEEEEEecCCchhhhHhcC-CCcccEEE-EEeCCeee
Q psy5679 69 KPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFE-VQAVPTVI-GFRNGDPV 127 (149)
Q Consensus 69 ~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~~-i~~~Pt~~-~~~~g~~~ 127 (149)
.|-|+..+.+...+++. ++.|...|+-.. .++.+... ...+||+= +|-+|+.+
T Consensus 151 ~P~CGFS~~~v~iL~~~-----nV~~~~fdIL~D-eelRqglK~fSdWPTfPQlyI~GEFi 205 (227)
T KOG0911|consen 151 EPKCGFSRQLVGILQSH-----NVNYTIFDVLTD-EELRQGLKEFSDWPTFPQLYVKGEFI 205 (227)
T ss_pred cccccccHHHHHHHHHc-----CCCeeEEeccCC-HHHHHHhhhhcCCCCccceeECCEec
Confidence 36688888888777665 466788888887 77766543 34567653 44588654
No 331
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=48.07 E-value=47 Score=18.34 Aligned_cols=57 Identities=9% Similarity=0.074 Sum_probs=32.7
Q ss_pred EEEeCCCChhHHhhhHHHHHHHhhcCCceEEEEEecCCchhhhHhcCCCcccEEEEEeCCee
Q psy5679 65 AYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTVIGFRNGDP 126 (149)
Q Consensus 65 v~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~~i~~~Pt~~~~~~g~~ 126 (149)
.++|.+-|+.|....-.+++..-.+ ....++.++..+++...-....+|++.. +|..
T Consensus 3 ~Ly~~~~~~~~~~v~~~L~~~~i~~---e~~~v~~~~~~~~~~~~~p~~~vP~l~~--~~~~ 59 (73)
T cd03076 3 TLTYFPVRGRAEAIRLLLADQGISW---EEERVTYEEWQESLKPKMLFGQLPCFKD--GDLT 59 (73)
T ss_pred EEEEeCCcchHHHHHHHHHHcCCCC---EEEEecHHHhhhhhhccCCCCCCCEEEE--CCEE
Confidence 4556667999998887777764443 4445544332022333223457899854 5544
No 332
>PRK10026 arsenate reductase; Provisional
Probab=47.98 E-value=30 Score=22.61 Aligned_cols=32 Identities=22% Similarity=0.412 Sum_probs=22.7
Q ss_pred EEEEeCCCChhHHhhhHHHHHHHhhcCCceEEEEEec
Q psy5679 64 LAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVE 100 (149)
Q Consensus 64 vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~ 100 (149)
+..|+.+.|..|++....|++- ++.|-.+|.-
T Consensus 4 i~iY~~p~Cst~RKA~~wL~~~-----gi~~~~~d~~ 35 (141)
T PRK10026 4 ITIYHNPACGTSRNTLEMIRNS-----GTEPTIIHYL 35 (141)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-----CCCcEEEeee
Confidence 5578889999999999877765 3444455543
No 333
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=47.97 E-value=58 Score=21.67 Aligned_cols=55 Identities=11% Similarity=0.160 Sum_probs=37.9
Q ss_pred CCCCEEEEEeCCCChhHHhhhHHHHHHHhhcCCceEEEEEecCC--chhhhHhcCCC
Q psy5679 59 GRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENG--GGEIAREFEVQ 113 (149)
Q Consensus 59 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~--~~~~~~~~~i~ 113 (149)
.++-++..|=+-.-+-|......|.+.+..+.++.++.|.+|-. +..+|...|+.
T Consensus 44 gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~~~~~Vl~IS~DLPFAq~RfC~aeGi~ 100 (158)
T COG2077 44 GKKKVISVFPSIDTPVCATQVRKFNEEAAKLGNTVVLCISMDLPFAQKRFCGAEGIE 100 (158)
T ss_pred CceEEEEEccCCCCchhhHHHHHHHHHHhccCCcEEEEEeCCChhHHhhhhhhcCcc
Confidence 34445555556677999999999999999998877777777633 13445444444
No 334
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=47.17 E-value=38 Score=25.61 Aligned_cols=50 Identities=12% Similarity=0.207 Sum_probs=30.1
Q ss_pred ceEEEEEecCCchhhhH--hcCCCcc--cEEEEEeCCeeeeeeeCCCCHHHHHHHHHH
Q psy5679 92 VEFVKINVENGGGEIAR--EFEVQAV--PTVIGFRNGDPVDTVVGNADQDVIQTLVSK 145 (149)
Q Consensus 92 v~~~~vd~~~~~~~~~~--~~~i~~~--Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~ 145 (149)
++++.+-|--|+|.=++ .+||.+- -..++|++|+.+.... .+++.+.+.+
T Consensus 290 l~VAVMGCvVNGPGEak~ADiGIaggg~g~~~lF~~G~~~~kv~----~~~~~~~l~~ 343 (346)
T TIGR00612 290 LKVAVMGCVVNGPGEAKHADIGISGGGTGSAILFKRGKPKAKQP----ETDMADELIR 343 (346)
T ss_pred CEEEEECceecCCchhhccCeeeecCCCCceEEEECCEEeEecC----HHHHHHHHHH
Confidence 77887777766443333 4555533 3577889998876544 3445444443
No 335
>PRK11752 putative S-transferase; Provisional
Probab=47.04 E-value=82 Score=22.62 Aligned_cols=55 Identities=7% Similarity=0.143 Sum_probs=35.3
Q ss_pred EEeCCCChhHHhhhHHHHHH-HhhcCC--ceEEEEEecCC---chhhhHhcCCCcccEEEE
Q psy5679 66 YFFKPSCGFCKQLEPKISTV-SETTSG--VEFVKINVENG---GGEIAREFEVQAVPTVIG 120 (149)
Q Consensus 66 ~f~~~~C~~C~~~~~~l~~~-~~~~~~--v~~~~vd~~~~---~~~~~~~~~i~~~Pt~~~ 120 (149)
.+|+..|+.|+++.-.++++ +...++ +.+..+|.... .+++.+.--...+|+++.
T Consensus 46 ~Ly~~~s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~~~e~~~iNP~GkVP~Lv~ 106 (264)
T PRK11752 46 QLYSLGTPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQFSSGFVEINPNSKIPALLD 106 (264)
T ss_pred EEecCCCCchHHHHHHHHHHHhccCCCCceEEEEecCccccccCHHHHhhCCCCCCCEEEe
Confidence 34445699999999888885 444443 56666665432 145555445568999975
No 336
>PF11072 DUF2859: Protein of unknown function (DUF2859); InterPro: IPR021300 This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=46.37 E-value=21 Score=23.40 Aligned_cols=18 Identities=28% Similarity=0.617 Sum_probs=15.4
Q ss_pred chhhhHhcCCCcccEEEE
Q psy5679 103 GGEIAREFEVQAVPTVIG 120 (149)
Q Consensus 103 ~~~~~~~~~i~~~Pt~~~ 120 (149)
+.+++++++++.||.++-
T Consensus 120 gddLA~rL~l~HYPvLIt 137 (142)
T PF11072_consen 120 GDDLARRLGLSHYPVLIT 137 (142)
T ss_pred HHHHHHHhCCCcccEEee
Confidence 357899999999999875
No 337
>TIGR03765 ICE_PFL_4695 integrating conjugative element protein, PFL_4695 family. This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=45.95 E-value=18 Score=22.33 Aligned_cols=37 Identities=11% Similarity=0.357 Sum_probs=24.7
Q ss_pred HHHHHHHhhcCCceEEEEEecCCchhhhHhcCCCcccEEEE
Q psy5679 80 PKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTVIG 120 (149)
Q Consensus 80 ~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~~i~~~Pt~~~ 120 (149)
..+.++.+.-+++.+.-++. .+++++++++.||.++.
T Consensus 63 ~~l~~Lr~lapgl~l~P~sg----ddLa~rL~l~hYPvLit 99 (105)
T TIGR03765 63 AALQRLRALAPGLPLLPVSG----DDLAERLGLRHYPVLIT 99 (105)
T ss_pred HHHHHHHHHcCCCcccCCCH----HHHHHHhCCCcccEEEe
Confidence 34555555555555544443 47799999999999875
No 338
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=45.84 E-value=56 Score=18.54 Aligned_cols=66 Identities=12% Similarity=0.115 Sum_probs=35.6
Q ss_pred CCCChhHHhhhHHHHHHHhhcCCceEEEEEecCCchhhhHh---cCCCcccEEEEEeCCeeeeeeeCCCCHHHHHHHHHH
Q psy5679 69 KPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIARE---FEVQAVPTVIGFRNGDPVDTVVGNADQDVIQTLVSK 145 (149)
Q Consensus 69 ~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~---~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~ 145 (149)
.+||++|.+.+-.+.+..-.+ ....++.... ...... -....+|++.. .+|+.+ ..-..+.++|.+
T Consensus 13 ~~~Sp~~~kv~~~L~~~~i~~---~~~~~~~~~~-~~~~~~~~~~p~~~vP~L~~-~~~~~l------~eS~aI~~yL~~ 81 (84)
T cd03038 13 RAFSPNVWKTRLALNHKGLEY---KTVPVEFPDI-PPILGELTSGGFYTVPVIVD-GSGEVI------GDSFAIAEYLEE 81 (84)
T ss_pred CCcCChhHHHHHHHHhCCCCC---eEEEecCCCc-ccccccccCCCCceeCeEEE-CCCCEE------eCHHHHHHHHHH
Confidence 368999999987777654443 3444454332 222221 23467898854 225443 234445555554
No 339
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=45.22 E-value=51 Score=17.85 Aligned_cols=55 Identities=13% Similarity=0.053 Sum_probs=30.4
Q ss_pred EEeCCCChhHHhhhHHHHHHHhhcCCceEEEEEec----CCchhhhHhcCCCcccEEEEEeCCee
Q psy5679 66 YFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVE----NGGGEIAREFEVQAVPTVIGFRNGDP 126 (149)
Q Consensus 66 ~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~----~~~~~~~~~~~i~~~Pt~~~~~~g~~ 126 (149)
+|+...|+.|...+-.+++..-. +....+|.. .. +++.+......+|++.. +|..
T Consensus 3 L~~~~~~~~~~~~~~~l~~~gi~---~~~~~~~~~~~~~~~-~~~~~~~p~~~vP~l~~--~~~~ 61 (73)
T cd03042 3 LYSYFRSSASYRVRIALNLKGLD---YEYVPVNLLKGEQLS-PAYRALNPQGLVPTLVI--DGLV 61 (73)
T ss_pred EecCCCCcchHHHHHHHHHcCCC---CeEEEecCccCCcCC-hHHHHhCCCCCCCEEEE--CCEE
Confidence 45455677777665555554322 445555542 22 34555455678998864 4543
No 340
>TIGR02743 TraW type-F conjugative transfer system protein TraW. This protein is an essential component of the F-type conjugative transfer sytem for plasmid DNA transfer and has been shown to be localized to the periplasm.
Probab=44.30 E-value=36 Score=23.69 Aligned_cols=26 Identities=19% Similarity=0.576 Sum_probs=20.5
Q ss_pred cCCchhhhHhcCCCcccEEEEEeCCeee
Q psy5679 100 ENGGGEIAREFEVQAVPTVIGFRNGDPV 127 (149)
Q Consensus 100 ~~~~~~~~~~~~i~~~Pt~~~~~~g~~~ 127 (149)
|.. ..+.++|+|+.+|+++. .+|+..
T Consensus 172 dQ~-g~Lt~rF~I~~VPavV~-q~g~~l 197 (202)
T TIGR02743 172 DQH-GKLTQKFGIKHVPARVS-QEGLRL 197 (202)
T ss_pred cCC-chHhhccCceeeceEEE-ecCCEE
Confidence 455 67999999999999986 566653
No 341
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=43.47 E-value=73 Score=21.88 Aligned_cols=36 Identities=3% Similarity=0.086 Sum_probs=25.7
Q ss_pred EEEEEeCCCChhHHhhhHHHHHHHhhcCC-ceEEEEE
Q psy5679 63 VLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKIN 98 (149)
Q Consensus 63 ~vv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd 98 (149)
.+-+|+..-||+|---...+++++..++- +...-+.
T Consensus 2 ~Id~~~D~vcPwcylg~~~l~~~~~~~~v~i~~~P~~ 38 (209)
T cd03021 2 KIELYYDVVSPYSYLAFEVLCRYQTAWNVDITYVPVF 38 (209)
T ss_pred ceEEEEeCCChHHHHHHHHHHHHHHHhCCeEEEEeee
Confidence 34466777899999999999998876642 4443443
No 342
>COG4837 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.23 E-value=75 Score=19.27 Aligned_cols=79 Identities=15% Similarity=0.246 Sum_probs=46.7
Q ss_pred EEEEEeCC-CChhHHhhh------HHHH-HHHhhcCC--ceEEEEEecCC-----chhhhHhcC--CCcccEEEEEeCCe
Q psy5679 63 VLAYFFKP-SCGFCKQLE------PKIS-TVSETTSG--VEFVKINVENG-----GGEIAREFE--VQAVPTVIGFRNGD 125 (149)
Q Consensus 63 ~vv~f~~~-~C~~C~~~~------~~l~-~~~~~~~~--v~~~~vd~~~~-----~~~~~~~~~--i~~~Pt~~~~~~g~ 125 (149)
-++.|++. -|..|...- ..|+ .+.++|++ +.+-.||+.+. ..+++++.. -.-+|-+++ +++
T Consensus 6 ~l~VyGae~iCASCV~aPtsKdt~eWLeaalkRKyp~~~F~~~YiDI~n~~~e~~~~~~aekI~~dey~YPlivv--ede 83 (106)
T COG4837 6 KLVVYGAEVICASCVNAPTSKDTYEWLEAALKRKYPNQPFKYTYIDITNPPLEDHDLQFAEKIEQDEYFYPLIVV--EDE 83 (106)
T ss_pred EEEEecchhhhHHhcCCCcchhHHHHHHHHHhccCCCCCcEEEEEEcCCCccHHHHHHHHHHHhcccccceEEEE--cce
Confidence 35556654 598886542 2232 44677888 88899998543 123333332 235787777 777
Q ss_pred eeeeeeCCCCHHHHHHHHHH
Q psy5679 126 PVDTVVGNADQDVIQTLVSK 145 (149)
Q Consensus 126 ~~~~~~g~~~~~~l~~~i~~ 145 (149)
.+ -.|.....++-..+.+
T Consensus 84 iV--aeGnprlKdiy~~m~d 101 (106)
T COG4837 84 IV--AEGNPRLKDIYRVMDD 101 (106)
T ss_pred Ee--ecCCchHHHHHHHHHH
Confidence 64 4566666666655544
No 343
>PLN02473 glutathione S-transferase
Probab=42.14 E-value=1.1e+02 Score=20.81 Aligned_cols=59 Identities=8% Similarity=0.015 Sum_probs=36.4
Q ss_pred EEEEEeCCCChhHHhhhHHHHHHHhhcCCceEEEEEecCC---chhhhHhcCCCcccEEEEEeCCee
Q psy5679 63 VLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENG---GGEIAREFEVQAVPTVIGFRNGDP 126 (149)
Q Consensus 63 ~vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~---~~~~~~~~~i~~~Pt~~~~~~g~~ 126 (149)
++-+++.+.|+.|+++.-.+++..-. ..+..+|..+. .+++....-...+|+++- +|..
T Consensus 2 ~~kLy~~~~s~~~~rv~~~L~e~gi~---ye~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~--~g~~ 63 (214)
T PLN02473 2 VVKVYGQIKAANPQRVLLCFLEKGIE---FEVIHVDLDKLEQKKPEHLLRQPFGQVPAIED--GDLK 63 (214)
T ss_pred ceEEecCCCCCchHHHHHHHHHcCCC---ceEEEecCcccccCCHHHHhhCCCCCCCeEEE--CCEE
Confidence 34456667788999888777775333 45566665421 144544455678999863 6643
No 344
>PRK15113 glutathione S-transferase; Provisional
Probab=42.01 E-value=92 Score=21.33 Aligned_cols=60 Identities=10% Similarity=0.136 Sum_probs=37.0
Q ss_pred CCEEEEEeCC--CChhHHhhhHHHHHHHhhcCCceEEEEEecCC---chhhhHhcCCCcccEEEEEeCCe
Q psy5679 61 NPVLAYFFKP--SCGFCKQLEPKISTVSETTSGVEFVKINVENG---GGEIAREFEVQAVPTVIGFRNGD 125 (149)
Q Consensus 61 ~~~vv~f~~~--~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~---~~~~~~~~~i~~~Pt~~~~~~g~ 125 (149)
++-+.+|+.+ .|++|+++.-.+++..-. +.+..+|..+. .+++.+..-...+|++.. +|.
T Consensus 3 ~~~~~Ly~~~~~~s~~~~rv~~~l~e~gi~---~e~~~v~~~~~~~~~~~~~~~nP~g~VP~L~~--~~~ 67 (214)
T PRK15113 3 KPAITLYSDAHFFSPYVMSAFVALQEKGLP---FELKTVDLDAGEHLQPTYQGYSLTRRVPTLQH--DDF 67 (214)
T ss_pred CCeEEEEeCCCCCCchHHHHHHHHHHcCCC---CeEEEeCCCCccccCHHHHhcCCCCCCCEEEE--CCE
Confidence 3445667755 599998888777766443 45556665432 134544445568999974 554
No 345
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=41.50 E-value=29 Score=21.19 Aligned_cols=31 Identities=19% Similarity=0.503 Sum_probs=20.5
Q ss_pred EeCCCChhHHhhhHHHHHHHhhcCCceEEEEEecCC
Q psy5679 67 FFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENG 102 (149)
Q Consensus 67 f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~ 102 (149)
|+.+.|..|++....|++- ++.+-.+|..+.
T Consensus 1 Y~~~~C~t~rka~~~L~~~-----gi~~~~~d~~k~ 31 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEEN-----GIEYEFIDYKKE 31 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHT-----T--EEEEETTTS
T ss_pred CcCCCCHHHHHHHHHHHHc-----CCCeEeehhhhC
Confidence 5778999999999877763 466677787654
No 346
>PRK13669 hypothetical protein; Provisional
Probab=41.26 E-value=73 Score=18.57 Aligned_cols=54 Identities=13% Similarity=0.203 Sum_probs=35.0
Q ss_pred HHHHHhhcCCceEEEEEecCCchhhhHhcCCCcccEEEEEeCCeeeeeeeCCCCHHHHHHHHHHHhc
Q psy5679 82 ISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTVIGFRNGDPVDTVVGNADQDVIQTLVSKLSQ 148 (149)
Q Consensus 82 l~~~~~~~~~v~~~~vd~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~~ 148 (149)
++.+ +++|++.++..+|-.. =..|++ ..+.+.||+.+ .| .+.+++.+.|.+.++
T Consensus 20 ~~~L-e~dP~~dVie~gCls~-CG~C~~-------~~FAlVng~~V---~a-~t~eeL~~kI~~~i~ 73 (78)
T PRK13669 20 FEKL-EKDPNLDVLEYGCLGY-CGICSE-------GLFALVNGEVV---EG-ETPEELVENIYAHLE 73 (78)
T ss_pred HHHH-HhCCCceEEEcchhhh-CcCccc-------CceEEECCeEe---ec-CCHHHHHHHHHHHHh
Confidence 4444 6688888888887665 233322 22334489765 34 688888888887764
No 347
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=41.22 E-value=88 Score=22.65 Aligned_cols=47 Identities=15% Similarity=0.218 Sum_probs=30.7
Q ss_pred CChhHHhhhHHHHHHHhhcCCceEEEEEecCCchhhhHhcCCCcccEEEE
Q psy5679 71 SCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTVIG 120 (149)
Q Consensus 71 ~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~~i~~~Pt~~~ 120 (149)
+|++|+++.-.+++..-. +.+..+|..+..+.+.+.--...+|++..
T Consensus 72 ~cp~s~rV~i~L~ekgi~---ye~~~vdl~~~~~~fl~iNP~GkVPvL~~ 118 (265)
T PLN02817 72 DCPFCQRVLLTLEEKHLP---YDMKLVDLTNKPEWFLKISPEGKVPVVKL 118 (265)
T ss_pred CCcHHHHHHHHHHHcCCC---CEEEEeCcCcCCHHHHhhCCCCCCCEEEE
Confidence 499999998888776443 45666666554133444334458999975
No 348
>PF14639 YqgF: Holliday-junction resolvase-like of SPT6 ; PDB: 3PSI_A 3PSF_A.
Probab=40.32 E-value=55 Score=21.55 Aligned_cols=48 Identities=13% Similarity=0.198 Sum_probs=29.3
Q ss_pred hhhHHHHHcCCCCEEEEEeCCCChhHHhhhHHHHHHHhhcC------CceEEEEE
Q psy5679 50 IDDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTS------GVEFVKIN 98 (149)
Q Consensus 50 ~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~------~v~~~~vd 98 (149)
.+.+.+++.+.+|-+|...+ ++..|+.+...+.++.++.. .+.++.+|
T Consensus 52 ~~~l~~~i~~~kP~vI~v~g-~~~~s~~l~~~v~~~v~~~~~~~~~~~i~V~~v~ 105 (150)
T PF14639_consen 52 MERLKKFIEKHKPDVIAVGG-NSRESRKLYDDVRDIVEELDEDEQMPPIPVVIVD 105 (150)
T ss_dssp HHHHHHHHHHH--SEEEE---SSTHHHHHHHHHHHHHHHTTB-TTS-B--EEE--
T ss_pred HHHHHHHHHHcCCeEEEEcC-CChhHHHHHHHHHHHHHHhhhcccCCCceEEEEC
Confidence 35566677666777777755 78999999999988877765 15555555
No 349
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=40.30 E-value=1.3e+02 Score=21.34 Aligned_cols=52 Identities=10% Similarity=0.108 Sum_probs=33.3
Q ss_pred CCChhHHhhhHHHHHHHhhcCCceEEEEEecCCchhhhHhcCCCcccEEEEEeCCee
Q psy5679 70 PSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTVIGFRNGDP 126 (149)
Q Consensus 70 ~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~~i~~~Pt~~~~~~g~~ 126 (149)
..|++|+++.-.+.+..-. +.+..+|..+..+++.+.--...+|+++- +|..
T Consensus 17 ~~cp~~~rv~i~L~ekgi~---~e~~~vd~~~~~~~fl~inP~g~vPvL~~--~g~~ 68 (236)
T TIGR00862 17 GNCPFSQRLFMILWLKGVV---FNVTTVDLKRKPEDLQNLAPGTHPPFLTY--NTEV 68 (236)
T ss_pred CCCHhHHHHHHHHHHcCCC---cEEEEECCCCCCHHHHHHCcCCCCCEEEE--CCEE
Confidence 4599999998777762111 56677776654145555445567999864 5543
No 350
>PF05679 CHGN: Chondroitin N-acetylgalactosaminyltransferase; InterPro: IPR008428 This family represents Chondroitin N-acetylgalactosaminyltransferase. Proteins have a type II transmembrane topology. The enzyme is involved in the biosynthetic initiation and elongation of chondroitin sulphate and is the key enzyme responsible for the selective chain assembly of chondroitin/dermatan sulphate on the linkage region tetrasaccharide common to various proteoglycans containing chondroitin/dermatan sulphate or heparin/heparan sulphate chains. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0032580 Golgi cisterna membrane
Probab=40.29 E-value=1.9e+02 Score=23.14 Aligned_cols=63 Identities=11% Similarity=0.199 Sum_probs=34.9
Q ss_pred CCCEEEEEeCCCC-hhHHhhhHHHHHHHhhcCC--ceEEEEEecCCchhhhHhcCCCccc--EEEEEe
Q psy5679 60 RNPVLAYFFKPSC-GFCKQLEPKISTVSETTSG--VEFVKINVENGGGEIAREFEVQAVP--TVIGFR 122 (149)
Q Consensus 60 ~~~~vv~f~~~~C-~~C~~~~~~l~~~~~~~~~--v~~~~vd~~~~~~~~~~~~~i~~~P--t~~~~~ 122 (149)
...++|+|+.+.- ..=.++...+.++.++++. +.++.+.-.......+-+.++...| +++++-
T Consensus 281 ~~L~vV~~~~~~~~~~~~~ik~~l~~l~~k~~~~~i~~i~~~~~~fsr~~~Ld~g~~~~~~d~L~f~~ 348 (499)
T PF05679_consen 281 VFLTVVLFYDPSDSDSISQIKELLEELERKYPFSRIKWISVKTGEFSRGAALDVGAKKFPPDSLLFFC 348 (499)
T ss_pred eEEEEEEecCcccchhHHHHHHHHHHHHHhCCccceEEEEecCCCccHHHHHHhhcccCCCCcEEEEE
Confidence 4457777777433 3334467788888888876 5555555222213333344555444 455553
No 351
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=39.65 E-value=42 Score=20.45 Aligned_cols=36 Identities=6% Similarity=0.187 Sum_probs=17.6
Q ss_pred EEeCCCChhHHhhhHHHHHHHhhcC--CceEEEEEecCC
Q psy5679 66 YFFKPSCGFCKQLEPKISTVSETTS--GVEFVKINVENG 102 (149)
Q Consensus 66 ~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~~ 102 (149)
.|+++ +.-..+++..=+++...+. +|.|-.+|+..+
T Consensus 5 vy~ss-~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~~ 42 (99)
T PF04908_consen 5 VYISS-ISGSREIKKRQQRVLMILEAKKIPFEEVDIAMD 42 (99)
T ss_dssp EEE-S-S-SSHHHHHHHHHHHHHHHHTT--EEEEETTT-
T ss_pred EEEec-ccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcCC
Confidence 34443 4444555555444444443 399999999876
No 352
>PLN02378 glutathione S-transferase DHAR1
Probab=39.55 E-value=93 Score=21.38 Aligned_cols=50 Identities=16% Similarity=0.122 Sum_probs=31.8
Q ss_pred CChhHHhhhHHHHHHHhhcCCceEEEEEecCCchhhhHhcCCCcccEEEEEeCCe
Q psy5679 71 SCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTVIGFRNGD 125 (149)
Q Consensus 71 ~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~~i~~~Pt~~~~~~g~ 125 (149)
+|++|+++.-.+++..-. +.+..+|...-.+++.+-.-...+|++.. +|.
T Consensus 19 ~~p~~~rv~~~L~e~gl~---~e~~~v~~~~~~~~~l~inP~G~VPvL~~--~~~ 68 (213)
T PLN02378 19 DCPFSQRALLTLEEKSLT---YKIHLINLSDKPQWFLDISPQGKVPVLKI--DDK 68 (213)
T ss_pred CCcchHHHHHHHHHcCCC---CeEEEeCcccCCHHHHHhCCCCCCCEEEE--CCE
Confidence 499999998777766443 45556666433134555445568998854 554
No 353
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=39.54 E-value=1e+02 Score=23.14 Aligned_cols=40 Identities=10% Similarity=0.240 Sum_probs=31.8
Q ss_pred CCCEEEEEeCCCChhHHhhhHHHHHHHhhcCCceEEEEEecCC
Q psy5679 60 RNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENG 102 (149)
Q Consensus 60 ~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~ 102 (149)
....+|.+. |+.|.+....|+.+...-+.+.++.+|+...
T Consensus 76 ~~~~lIELG---sG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~ 115 (319)
T TIGR03439 76 SGSMLVELG---SGNLRKVGILLEALERQKKSVDYYALDVSRS 115 (319)
T ss_pred CCCEEEEEC---CCchHHHHHHHHHHHhcCCCceEEEEECCHH
Confidence 445788885 8999999999999975544588999998754
No 354
>COG2101 SPT15 TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription]
Probab=37.63 E-value=67 Score=21.90 Aligned_cols=30 Identities=27% Similarity=0.459 Sum_probs=24.2
Q ss_pred EEEEEeCCeeeeeeeCCCCHHHHHHHHHHHhc
Q psy5679 117 TVIGFRNGDPVDTVVGNADQDVIQTLVSKLSQ 148 (149)
Q Consensus 117 t~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~~ 148 (149)
++++|+.||.+ ..|..+.+++...++.+++
T Consensus 55 a~LIF~SGK~V--cTGaKs~ed~~~av~~~~~ 84 (185)
T COG2101 55 AALIFRSGKVV--CTGAKSVEDVHRAVKKLAK 84 (185)
T ss_pred eEEEEecCcEE--EeccCcHHHHHHHHHHHHH
Confidence 66778899985 6788899999998887754
No 355
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=37.53 E-value=71 Score=17.39 Aligned_cols=56 Identities=13% Similarity=0.106 Sum_probs=31.5
Q ss_pred EEeCCCChhHHhhhHHHHHHHhhcCCceEEEEEecCC-chhhhHhcCCCcccEEEEEeCCee
Q psy5679 66 YFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENG-GGEIAREFEVQAVPTVIGFRNGDP 126 (149)
Q Consensus 66 ~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~-~~~~~~~~~i~~~Pt~~~~~~g~~ 126 (149)
+++.+.|+.|+..+-.+++..-.+ ....++..+. ..++........+|++.. +|..
T Consensus 3 Ly~~~~~~~~~~v~~~l~~~gi~~---e~~~~~~~~~~~~~~~~~~p~~~vP~L~~--~~~~ 59 (72)
T cd03039 3 LTYFNIRGRGEPIRLLLADAGVEY---EDVRITYEEWPELDLKPTLPFGQLPVLEI--DGKK 59 (72)
T ss_pred EEEEcCcchHHHHHHHHHHCCCCc---EEEEeCHHHhhhhhhccCCcCCCCCEEEE--CCEE
Confidence 455677899998877776664443 3344443322 012333334568998864 5543
No 356
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=37.42 E-value=98 Score=18.93 Aligned_cols=41 Identities=5% Similarity=-0.014 Sum_probs=18.9
Q ss_pred hhhHHHHHcCCCCEEEEEeCCCChhHHhhhHHHHHHHhhcC
Q psy5679 50 IDDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTS 90 (149)
Q Consensus 50 ~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~ 90 (149)
.+++.+.+.+.++-+|.+....-..-......++.+.+..+
T Consensus 39 ~~~l~~~~~~~~pdvV~iS~~~~~~~~~~~~~i~~l~~~~~ 79 (119)
T cd02067 39 PEEIVEAAKEEDADAIGLSGLLTTHMTLMKEVIEELKEAGL 79 (119)
T ss_pred HHHHHHHHHHcCCCEEEEeccccccHHHHHHHHHHHHHcCC
Confidence 34555555444554555544322233444444445544444
No 357
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=37.13 E-value=47 Score=22.85 Aligned_cols=49 Identities=18% Similarity=0.305 Sum_probs=29.6
Q ss_pred CCChhHHhhhHHHHHHHhhcCC--ceEEEEEecCCchhhhHhcCCCcccEEEEEeCCe
Q psy5679 70 PSCGFCKQLEPKISTVSETTSG--VEFVKINVENGGGEIAREFEVQAVPTVIGFRNGD 125 (149)
Q Consensus 70 ~~C~~C~~~~~~l~~~~~~~~~--v~~~~vd~~~~~~~~~~~~~i~~~Pt~~~~~~g~ 125 (149)
+.||+|.+.+=.+ -..+ +.....+-|.. ..-.+-.|-+.+|-+.- .+|+
T Consensus 7 dHCPfcvrarmi~-----Gl~nipve~~vL~nDDe-~Tp~rmiG~KqVPiL~K-edg~ 57 (215)
T COG2999 7 DHCPFCVRARMIF-----GLKNIPVELHVLLNDDE-ETPIRMIGQKQVPILQK-EDGR 57 (215)
T ss_pred ccChHHHHHHHHh-----hccCCChhhheeccCcc-cChhhhhcccccceEEc-cccc
Confidence 5699999885322 2223 55555555555 44556668888886643 3454
No 358
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=36.70 E-value=99 Score=18.76 Aligned_cols=52 Identities=6% Similarity=0.060 Sum_probs=35.2
Q ss_pred hhHHHHHcCCCCEEEEEeCCCChhHHhhhHHHHHHHhhcCC--ceEEEEEecCC
Q psy5679 51 DDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG--VEFVKINVENG 102 (149)
Q Consensus 51 ~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~--v~~~~vd~~~~ 102 (149)
+++.+.+...++-+|-+...+.+.........+.+.+..++ +.+.....+..
T Consensus 41 ~~l~~~~~~~~pd~V~iS~~~~~~~~~~~~l~~~~k~~~p~~~iv~GG~~~t~~ 94 (121)
T PF02310_consen 41 EELVEALRAERPDVVGISVSMTPNLPEAKRLARAIKERNPNIPIVVGGPHATAD 94 (121)
T ss_dssp HHHHHHHHHTTCSEEEEEESSSTHHHHHHHHHHHHHTTCTTSEEEEEESSSGHH
T ss_pred HHHHHHHhcCCCcEEEEEccCcCcHHHHHHHHHHHHhcCCCCEEEEECCchhcC
Confidence 56666665567777888877788888888777887777777 44444444444
No 359
>KOG1731|consensus
Probab=33.99 E-value=58 Score=26.55 Aligned_cols=57 Identities=12% Similarity=0.092 Sum_probs=37.8
Q ss_pred CCceEEEEEecCCchhhhHhcCCCcccEEEEEeCCeeeeeeeCCCCHHHHHHHHHHHhc
Q psy5679 90 SGVEFVKINVENGGGEIAREFEVQAVPTVIGFRNGDPVDTVVGNADQDVIQTLVSKLSQ 148 (149)
Q Consensus 90 ~~v~~~~vd~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~~ 148 (149)
+++.+..+-.+++ -.+.+ +++...|+.+++++|+.........+.+.+.+-|.+++.
T Consensus 214 ~~v~vr~~~d~q~-~~~~~-l~~~~~~~~llfrnG~~q~l~~~~~s~~~y~~~I~~~lg 270 (606)
T KOG1731|consen 214 KQVGVRARLDTQN-FPLFG-LKPDNFPLALLFRNGEQQPLWPSSSSRSAYVKKIDDLLG 270 (606)
T ss_pred CCcceEEEecchh-ccccc-cCCCCchhhhhhcCCcccccccccccHHHHHHHHHHHhc
Confidence 3444444444444 45555 899999999999999876555544566666666666654
No 360
>PRK13738 conjugal transfer pilus assembly protein TraW; Provisional
Probab=33.57 E-value=69 Score=22.49 Aligned_cols=28 Identities=18% Similarity=0.463 Sum_probs=21.4
Q ss_pred cCCchhhhHhcCCCcccEEEEE-eCCeeee
Q psy5679 100 ENGGGEIAREFEVQAVPTVIGF-RNGDPVD 128 (149)
Q Consensus 100 ~~~~~~~~~~~~i~~~Pt~~~~-~~g~~~~ 128 (149)
|.. ..+.++|+|+.+|+++.- .+|+...
T Consensus 170 dQ~-G~Lt~rF~I~~VPAvV~~~q~G~~l~ 198 (209)
T PRK13738 170 DQN-GVLCQRFGIDQVPARVSAVPGGRFLK 198 (209)
T ss_pred cCc-chHHHhcCCeeeceEEEEcCCCCEEE
Confidence 445 568999999999999862 5776543
No 361
>cd00652 TBP_TLF TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA. New members of the TBP family, called TBP-like proteins (TBLP, TLF, TLP) or TBP-related factors (TRF1, TRF2,TRP), are similar to the core domain of TBPs, with identical or chemically similar amino acids at many
Probab=33.34 E-value=1e+02 Score=20.88 Aligned_cols=29 Identities=24% Similarity=0.385 Sum_probs=22.2
Q ss_pred EEEEEeCCeeeeeeeCCCCHHHHHHHHHHHh
Q psy5679 117 TVIGFRNGDPVDTVVGNADQDVIQTLVSKLS 147 (149)
Q Consensus 117 t~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~ 147 (149)
++++|..|+.+ ..|..+.+++...++.+.
T Consensus 141 t~lIF~sGkvv--itGaks~~~~~~a~~~i~ 169 (174)
T cd00652 141 VLLIFVSGKIV--ITGAKSREDIYEAVEKIY 169 (174)
T ss_pred EEEEEcCCEEE--EEecCCHHHHHHHHHHHH
Confidence 56677888884 777788898888887764
No 362
>cd04518 TBP_archaea archaeal TATA box binding protein (TBP): TBPs are transcription factors present in archaea and eukaryotes, that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=33.00 E-value=1.1e+02 Score=20.82 Aligned_cols=29 Identities=24% Similarity=0.403 Sum_probs=22.9
Q ss_pred EEEEEeCCeeeeeeeCCCCHHHHHHHHHHHh
Q psy5679 117 TVIGFRNGDPVDTVVGNADQDVIQTLVSKLS 147 (149)
Q Consensus 117 t~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~ 147 (149)
++++|..|+.+ ..|..+.+++...++.+.
T Consensus 140 ~~lIF~SGKvv--itGaks~~~~~~a~~~i~ 168 (174)
T cd04518 140 VLLLFSSGKMV--ITGAKSEEDAKRAVEKLL 168 (174)
T ss_pred EEEEeCCCEEE--EEecCCHHHHHHHHHHHH
Confidence 56677889884 778789999998887764
No 363
>KOG0855|consensus
Probab=32.98 E-value=1.6e+02 Score=20.10 Aligned_cols=56 Identities=18% Similarity=0.554 Sum_probs=31.9
Q ss_pred cCCCCEEEEEeC----CCC--hhHHhhhHHHHHHHhhcCCceEEEEEecCC--------------------chhhhHhcC
Q psy5679 58 RGRNPVLAYFFK----PSC--GFCKQLEPKISTVSETTSGVEFVKINVENG--------------------GGEIAREFE 111 (149)
Q Consensus 58 ~~~~~~vv~f~~----~~C--~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~--------------------~~~~~~~~~ 111 (149)
..++++|++||- |.| ..| .++..++++.+.+ ..++.+..|.. ..++...+|
T Consensus 88 t~nk~vV~f~YP~asTPGCTkQaC-gFRDnY~k~kka~--aeV~GlS~D~s~sqKaF~sKqnlPYhLLSDpk~e~ik~lG 164 (211)
T KOG0855|consen 88 TGNKPVVLFFYPAASTPGCTKQAC-GFRDNYEKFKKAG--AEVIGLSGDDSASQKAFASKQNLPYHLLSDPKNEVIKDLG 164 (211)
T ss_pred cCCCcEEEEEeccCCCCCcccccc-cccccHHHHhhcC--ceEEeeccCchHHHHHhhhhccCCeeeecCcchhHHHHhC
Confidence 456688888883 445 223 3555666776544 33444443322 145667777
Q ss_pred CCccc
Q psy5679 112 VQAVP 116 (149)
Q Consensus 112 i~~~P 116 (149)
..+.|
T Consensus 165 a~k~p 169 (211)
T KOG0855|consen 165 APKDP 169 (211)
T ss_pred CCCCC
Confidence 77666
No 364
>PRK01233 glyS glycyl-tRNA synthetase subunit beta; Validated
Probab=32.56 E-value=1.9e+02 Score=24.37 Aligned_cols=66 Identities=15% Similarity=0.233 Sum_probs=35.7
Q ss_pred EEEecchhhHHHHHcCCCCEEEEEeCCCChhHHhhhHHHHHHHhhcCCceEEEEEecCCchhhhHhcCCCcccEEEE
Q psy5679 44 YLIIEKIDDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTVIG 120 (149)
Q Consensus 44 v~~i~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~~i~~~Pt~~~ 120 (149)
..++++.++|.+.+.++ .|++.+ ..-=......+++++++..+ .++.++. -+-+--++-.+|+.+.
T Consensus 194 ~i~i~~~~~Y~~~L~~~-~VI~d~----~~R~~~I~~~i~~~a~~~g~----~v~~d~~--LLeEVt~LvE~P~~l~ 259 (682)
T PRK01233 194 PITIANADDYEEKLREA-KVIADP----EERKAIILEQIEELAAELGG----QVDIDED--LLEEVTGLVEWPVVLL 259 (682)
T ss_pred CeEeCCHHHHHHHHhhC-CEECCH----HHHHHHHHHHHHHHHHHcCC----EecCCHH--HHHHHHhccCCCeEEE
Confidence 56778899999998555 666633 11122344455666666532 1122222 2223335667776665
No 365
>PRK08351 DNA-directed RNA polymerase subunit E''; Validated
Probab=32.18 E-value=49 Score=18.27 Aligned_cols=43 Identities=26% Similarity=0.479 Sum_probs=25.9
Q ss_pred CCCChhHHhhhHHHHHHHhhcCCceEEEEEecCCchhhhHhcCCCcccEEEE
Q psy5679 69 KPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTVIG 120 (149)
Q Consensus 69 ~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~~i~~~Pt~~~ 120 (149)
.+.||.|.... +..++.++ ++-+|-++ .++++++|+ ..|..+.
T Consensus 15 ~~~CP~Cgs~~-----~T~~W~G~-viI~dPe~--S~IAk~l~i-~~pG~YA 57 (61)
T PRK08351 15 EDRCPVCGSRD-----LSDEWFDL-VIIIDVEN--SRIAKKLGA-KVPGKYA 57 (61)
T ss_pred CCcCCCCcCCc-----cccccccE-EEEeCCcH--hHHHHHhCC-CCCCeEE
Confidence 45699998743 45555552 23445443 489999998 4554433
No 366
>cd03071 PDI_b'_NRX PDIb' family, NRX subgroup, redox inactive TRX-like domain b'; composed of vertebrate nucleoredoxins (NRX). NRX is a 400-amino acid nuclear protein with one redox active TRX domain followed by one redox inactive TRX-like domain homologous to the b' domain of PDI. In vitro studies show that NRX has thiol oxidoreductase activity and that it may be involved in the redox regulation of transcription, in a manner different from that of TRX or glutaredoxin. NRX enhances the activation of NF-kB by TNFalpha, as well as PMA-1 induced AP-1 and FK-induced CREB activation. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. The mouse NRX gene is implicated in streptozotocin-induced diabetes. Similar to PDI, the b' domain of NRX is likely involved in substrate recognition.
Probab=31.89 E-value=1.3e+02 Score=18.79 Aligned_cols=86 Identities=17% Similarity=0.266 Sum_probs=49.0
Q ss_pred CCCCEEEEEeCC-CChhHHhhhHHHHHHHhh----cC----C---ceEEEEEecCCchhhhHhc-CCC-cccEEEEE---
Q psy5679 59 GRNPVLAYFFKP-SCGFCKQLEPKISTVSET----TS----G---VEFVKINVENGGGEIAREF-EVQ-AVPTVIGF--- 121 (149)
Q Consensus 59 ~~~~~vv~f~~~-~C~~C~~~~~~l~~~~~~----~~----~---v~~~~vd~~~~~~~~~~~~-~i~-~~Pt~~~~--- 121 (149)
+..+.+|+|... .-+.-....+.++.++++ ++ + +-|+..|-+.. +.-+.| +.. ..|.++++
T Consensus 13 n~~p~lvlf~D~Edeg~l~~A~~llQpiAd~~~aka~~k~~dap~~f~~a~ede~t--dsLRDf~nL~d~~P~LviLDip 90 (116)
T cd03071 13 NEGPCLVLFVDSEDEGESEAAKQLIQPIAEKIIAKYKAKEEEAPLLFFVAGEDDMT--DSLRDYTNLPEAAPLLTILDMS 90 (116)
T ss_pred cCCceEEEEecccchhhHHHHHHHHHHHHHHHHHHhhccCCCcceeeeeeccchHH--HHHHHhcCCCccCceEEEEecc
Confidence 678888888743 333566666666655544 22 1 33333333333 333333 443 57888777
Q ss_pred eCCeeeeeeeCCCCHHHHHHHHHHHh
Q psy5679 122 RNGDPVDTVVGNADQDVIQTLVSKLS 147 (149)
Q Consensus 122 ~~g~~~~~~~g~~~~~~l~~~i~~~~ 147 (149)
..++.+-... .++.+.+.+++..++
T Consensus 91 ~r~~~v~~~e-eIT~e~~~~fv~~yl 115 (116)
T cd03071 91 ARAKYVMDVE-EITPAIVEAFVSDFL 115 (116)
T ss_pred ccceEeCchH-hcCHHHHHHHHHHhh
Confidence 2344433332 388999999998765
No 367
>cd03070 PDI_b_ERp44 PDIb family, ERp44 subfamily, first redox inactive TRX-like domain b; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b domain of ERp44 is likely involved in binding to substrates.
Probab=31.86 E-value=1.2e+02 Score=18.20 Aligned_cols=85 Identities=11% Similarity=0.114 Sum_probs=44.0
Q ss_pred EEecchhhHHHHHcCCCCEEEEEeCCCChhHHhhhHHHHHHHhhcCC-ceEEEEEecCCchhhhHhcCCCcccEEEEEeC
Q psy5679 45 LIIEKIDDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENGGGEIAREFEVQAVPTVIGFRN 123 (149)
Q Consensus 45 ~~i~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~~~~~~~~~~i~~~Pt~~~~~~ 123 (149)
.++.+.++++.+-.+++.++-+|-+...+.- ..++++|..+++ =.|+..-.+.. ....-.+-|.+++-.+
T Consensus 2 kef~~~~eL~~id~~kr~iIgYF~~~~~~eY----~~f~kvA~~lr~dC~F~v~~G~~~-----~~~~~~~~~~i~frp~ 72 (91)
T cd03070 2 KEFRNLDELNNVDRSKRNIIGYFESKDSDEY----DNFRKVANILRDDCSFLVGFGDVT-----KPERPPGDNIIYFPPG 72 (91)
T ss_pred ceecCHHHHHhhCcCCceEEEEEcCCCChhH----HHHHHHHHHHhhcCeEEEEecccc-----ccccCCCCCeEEECCC
Confidence 4566778888744666666666655444432 466677777775 33322221111 1112344566655544
Q ss_pred -CeeeeeeeCCC-CHHH
Q psy5679 124 -GDPVDTVVGNA-DQDV 138 (149)
Q Consensus 124 -g~~~~~~~g~~-~~~~ 138 (149)
...-..+.|.. +.++
T Consensus 73 ~~~~~~~y~G~~tn~~~ 89 (91)
T cd03070 73 HNAPDMVYLGSLTNFDL 89 (91)
T ss_pred CCCCceEEccCCCChhh
Confidence 22324677764 4443
No 368
>COG4312 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.71 E-value=1.5e+02 Score=21.18 Aligned_cols=66 Identities=12% Similarity=0.156 Sum_probs=38.5
Q ss_pred CCccccccceeEEEecchhhHHHHHc-CCCCEEEEE-----eCCCChhHHhhhHHHHHHHhhcC--CceEEEEE
Q psy5679 33 LPNLIQAVQMAYLIIEKIDDFKQTIR-GRNPVLAYF-----FKPSCGFCKQLEPKISTVSETTS--GVEFVKIN 98 (149)
Q Consensus 33 ~~~~~~~~~~~v~~i~~~~~~~~~~~-~~~~~vv~f-----~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~vd 98 (149)
.|...-.........++...+.++.. +...+|-.| |..-|+-|.-+...+.-...... ++.++.|.
T Consensus 46 LPw~~V~K~Y~Fe~~~G~~sLadLF~grsqLIvYhfmF~P~~~~~C~gCS~laD~~dGa~~HL~~~dv~lv~Vs 119 (247)
T COG4312 46 LPWGEVDKDYVFETENGKKSLADLFGGRSQLIVYHFMFGPGWDHGCPGCSFLADHWDGAVAHLEHHDVTLVAVS 119 (247)
T ss_pred CCcceecceeEeecCCcchhHHHHhCCCceEEEEEEecCCCccCCCCchhhHHhhhhhhhhhHhhcCceEEEEe
Confidence 33333333344445566677777773 344433333 33459999999988865444433 37777776
No 369
>PRK00394 transcription factor; Reviewed
Probab=31.44 E-value=1.2e+02 Score=20.73 Aligned_cols=29 Identities=24% Similarity=0.406 Sum_probs=22.6
Q ss_pred EEEEEeCCeeeeeeeCCCCHHHHHHHHHHHh
Q psy5679 117 TVIGFRNGDPVDTVVGNADQDVIQTLVSKLS 147 (149)
Q Consensus 117 t~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~ 147 (149)
++++|..|+.+ ..|..+.+++...++.+.
T Consensus 141 ~~lIF~SGKvv--itGaks~~~~~~a~~~i~ 169 (179)
T PRK00394 141 VVLLFGSGKLV--ITGAKSEEDAEKAVEKIL 169 (179)
T ss_pred EEEEEcCCEEE--EEecCCHHHHHHHHHHHH
Confidence 56677888884 778788998888887764
No 370
>cd04516 TBP_eukaryotes eukaryotic TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=30.92 E-value=1.2e+02 Score=20.62 Aligned_cols=29 Identities=17% Similarity=0.318 Sum_probs=22.1
Q ss_pred EEEEEeCCeeeeeeeCCCCHHHHHHHHHHHh
Q psy5679 117 TVIGFRNGDPVDTVVGNADQDVIQTLVSKLS 147 (149)
Q Consensus 117 t~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~ 147 (149)
++++|..|+.+ ..|..+.+++.+.++.++
T Consensus 140 ~~liF~sGkvv--itGaks~~~~~~a~~~i~ 168 (174)
T cd04516 140 VLLIFVSGKIV--LTGAKSREEIYQAFENIY 168 (174)
T ss_pred EEEEeCCCEEE--EEecCCHHHHHHHHHHHH
Confidence 45667888884 677788999998887764
No 371
>cd03527 RuBisCO_small Ribulose bisphosphate carboxylase/oxygenase (Rubisco), small subunit. Rubisco is a bifunctional enzyme catalyzes the initial steps of two opposing metabolic pathways: photosynthetic carbon fixation and the competing process of photorespiration. Rubisco Form I, present in plants and green algae, is composed of eight large and eight small subunits. The nearly identical small subunits are encoded by a family of nuclear genes. After translation, the small subunits are translocated across the chloroplast membrane, where an N-terminal signal peptide is cleaved off. While the large subunits contain the catalytic activities, it has been shown that the small subunits are important for catalysis by enhancing the catalytic rate through inducing conformational changes in the large subunits.
Probab=30.81 E-value=1.2e+02 Score=18.52 Aligned_cols=27 Identities=15% Similarity=0.137 Sum_probs=18.3
Q ss_pred HhhhHHHHHHHhhcCC--ceEEEEEecCC
Q psy5679 76 KQLEPKISTVSETTSG--VEFVKINVENG 102 (149)
Q Consensus 76 ~~~~~~l~~~~~~~~~--v~~~~vd~~~~ 102 (149)
..+...+++-.+.|++ |.++.+|-...
T Consensus 60 ~~Vl~ei~~C~~~~p~~YVRliG~D~~~q 88 (99)
T cd03527 60 AQVLREIEACRKAYPDHYVRVVGFDNYKQ 88 (99)
T ss_pred HHHHHHHHHHHHHCCCCeEEEEEEeCCcc
Confidence 3444455566778888 99999886543
No 372
>PF09936 Methyltrn_RNA_4: SAM-dependent RNA methyltransferase; InterPro: IPR019230 This entry contains proteins that have no known function. They are found as separate proteins and as a C-terminal domain to tRNA (guanine-N(1)-)-methyltransferases to which they are structurally related. ; PDB: 3DCM_X.
Probab=29.95 E-value=61 Score=22.25 Aligned_cols=23 Identities=17% Similarity=0.300 Sum_probs=14.6
Q ss_pred chhhHHHHH-cCCCCEEEEEeCCC
Q psy5679 49 KIDDFKQTI-RGRNPVLAYFFKPS 71 (149)
Q Consensus 49 ~~~~~~~~~-~~~~~~vv~f~~~~ 71 (149)
+.+++.+.+ ..++|++++|.+-|
T Consensus 120 s~~~lr~~l~~~~~P~LllFGTGw 143 (185)
T PF09936_consen 120 SYAELRRMLEEEDRPVLLLFGTGW 143 (185)
T ss_dssp -HHHHHHHHHH--S-EEEEE--TT
T ss_pred CHHHHHHHHhccCCeEEEEecCCC
Confidence 367788887 88999999999988
No 373
>PLN00062 TATA-box-binding protein; Provisional
Probab=29.63 E-value=1.3e+02 Score=20.44 Aligned_cols=29 Identities=21% Similarity=0.322 Sum_probs=21.9
Q ss_pred EEEEEeCCeeeeeeeCCCCHHHHHHHHHHHh
Q psy5679 117 TVIGFRNGDPVDTVVGNADQDVIQTLVSKLS 147 (149)
Q Consensus 117 t~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~ 147 (149)
++++|..|+.+ ..|..+.+++.+.++.++
T Consensus 140 ~~liF~sGkvv--itGaks~~~~~~ai~~i~ 168 (179)
T PLN00062 140 VLLIFVSGKIV--ITGAKVREEIYTAFENIY 168 (179)
T ss_pred EEEEeCCCEEE--EEecCCHHHHHHHHHHHH
Confidence 56667788874 677788998988887764
No 374
>cd04517 TLF TBP-like factors (TLF; also called TLP, TRF, TRP), which are found in most metazoans. TLFs and TBPs have well-conserved core domains; however, they only share about 60% similarity. TLFs, like TBPs, interact with TFIIA and TFIIB, which are part of the basal transcription machinery. Yet, in contrast to TBPs, TLFs seem not to interact with the TATA-box and even have a negative effect on the transcription of TATA-containing promoters. Recent results indicate that TLFs are involved in the transcription via TATA-less promoters.
Probab=29.40 E-value=1.4e+02 Score=20.25 Aligned_cols=30 Identities=10% Similarity=0.242 Sum_probs=23.1
Q ss_pred cEEEEEeCCeeeeeeeCCCCHHHHHHHHHHHh
Q psy5679 116 PTVIGFRNGDPVDTVVGNADQDVIQTLVSKLS 147 (149)
Q Consensus 116 Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~ 147 (149)
.++.+|.+|+.+ ..|..+.+++...++.++
T Consensus 48 ~t~lIF~sGKiv--iTGaks~~~~~~a~~~~~ 77 (174)
T cd04517 48 ATASVWSSGKIT--ITGATSEEEAKQAARRAA 77 (174)
T ss_pred EEEEEECCCeEE--EEccCCHHHHHHHHHHHH
Confidence 367788899984 678778888888877654
No 375
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=29.31 E-value=2e+02 Score=20.07 Aligned_cols=37 Identities=16% Similarity=0.316 Sum_probs=25.8
Q ss_pred CCCCEEEEEeCCCChhHHhhhHHHHHHHhhcCCceEEEEE
Q psy5679 59 GRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKIN 98 (149)
Q Consensus 59 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd 98 (149)
....-+.+|....|+.|......+. .....+.++-|+
T Consensus 107 ~~~~rlalFvkd~C~~C~~~~~~l~---a~~~~~Diylvg 143 (200)
T TIGR03759 107 QGGGRLALFVKDDCVACDARVQRLL---ADNAPLDLYLVG 143 (200)
T ss_pred CCCCeEEEEeCCCChHHHHHHHHHh---cCCCceeEEEec
Confidence 4556677888899999998876652 222237778777
No 376
>PF02484 Rhabdo_NV: Rhabdovirus Non-virion protein; InterPro: IPR003490 Infectious hematopoietic necrosis virus (IHNV) is a member of the family Rhabdoviridae. The non-virion protein (NV) is coded for by one of the six genes of the IHNV genome [], but is absent in vesiculovirus-like rhabdovirus [].
Probab=29.19 E-value=81 Score=18.89 Aligned_cols=38 Identities=16% Similarity=0.185 Sum_probs=24.8
Q ss_pred hcCCCcccEEEEEeCCeeeeeeeCCCCHHHHHHHHHHH
Q psy5679 109 EFEVQAVPTVIGFRNGDPVDTVVGNADQDVIQTLVSKL 146 (149)
Q Consensus 109 ~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~ 146 (149)
+|.+...-.=++|.+|+.++...|......+...+..+
T Consensus 18 ryk~~va~hgflfddg~~vw~e~~d~~w~rl~~vv~al 55 (111)
T PF02484_consen 18 RYKNEVARHGFLFDDGDIVWSEDDDETWNRLCDVVNAL 55 (111)
T ss_pred HHHhhccccceEecCCcEEEecCChHHHHHHHHHHHHH
Confidence 34444444445778999999888866666665555543
No 377
>KOG3445|consensus
Probab=28.72 E-value=1.7e+02 Score=19.10 Aligned_cols=69 Identities=16% Similarity=0.134 Sum_probs=45.6
Q ss_pred EEeCCCChhHHhhhH----HHHHHHhhcCCceEEEEEecCCchhhhHhcCCCcccEEEEE-eCCeeeeeeeCCCCHHHHH
Q psy5679 66 YFFKPSCGFCKQLEP----KISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTVIGF-RNGDPVDTVVGNADQDVIQ 140 (149)
Q Consensus 66 ~f~~~~C~~C~~~~~----~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~~i~~~Pt~~~~-~~g~~~~~~~g~~~~~~l~ 140 (149)
+=|-.|-+.++-++. .|.++++++|++.|+..... ...|.+... .||+..-.-.-.++.+++.
T Consensus 28 ~sfCnwggSSrGmR~Fle~~L~~~a~enP~v~i~v~~rr------------g~hP~lraeY~NGre~vicvrnms~eevs 95 (145)
T KOG3445|consen 28 VSFCNWGGSSRGMREFLESELPDLARENPGVVIYVEPRR------------GQHPLLRAEYLNGRERVICVRNMSQEEVS 95 (145)
T ss_pred EEEecCCCccHHHHHHHHHHHHHHHhhCCCeEEEEeccC------------CCCceEEEEecCCceEEEeeccCCHHHHH
Confidence 344667777766655 45688999998777653322 235666644 6887654444568999998
Q ss_pred HHHHHH
Q psy5679 141 TLVSKL 146 (149)
Q Consensus 141 ~~i~~~ 146 (149)
.++..+
T Consensus 96 ~~~~lL 101 (145)
T KOG3445|consen 96 KKATLL 101 (145)
T ss_pred HHHHHH
Confidence 888765
No 378
>PRK13817 ribosome-binding factor A; Provisional
Probab=28.06 E-value=1.1e+02 Score=19.25 Aligned_cols=22 Identities=14% Similarity=0.073 Sum_probs=18.2
Q ss_pred hhhhHhcCCCcccEEEEEeCCe
Q psy5679 104 GEIAREFEVQAVPTVIGFRNGD 125 (149)
Q Consensus 104 ~~~~~~~~i~~~Pt~~~~~~g~ 125 (149)
..++++.+++.+|.+.|+.|..
T Consensus 74 ~~l~~~l~lR~~PeL~F~~D~s 95 (119)
T PRK13817 74 HLLAQATVLRYVPKLEFVYDES 95 (119)
T ss_pred HHHHHhCCCeECCEEEEEEcCc
Confidence 4678889999999999986653
No 379
>PF08599 Nbs1_C: DNA damage repair protein Nbs1; InterPro: IPR013908 This C-terminal region of the DNA damage repair protein Nbs1 has been identified to be necessary for the binding of Mre11 and Tel1 [].
Probab=27.84 E-value=52 Score=18.27 Aligned_cols=33 Identities=15% Similarity=0.349 Sum_probs=20.6
Q ss_pred CCCcccEEEEEeCCeeeeeeeCCCCHHHHHHHHHHHh
Q psy5679 111 EVQAVPTVIGFRNGDPVDTVVGNADQDVIQTLVSKLS 147 (149)
Q Consensus 111 ~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~ 147 (149)
|..+.|.|+- ....+....+ ...++.+|+.+.+
T Consensus 14 Ga~~lP~IIG--GSDLi~h~~~--knseleeWl~~e~ 46 (65)
T PF08599_consen 14 GAGGLPHIIG--GSDLIAHHAG--KNSELEEWLRQEM 46 (65)
T ss_pred CCCCCCeeec--chhhhhcccc--ccccHHHHHHHHH
Confidence 5567888865 3334434444 4448999998765
No 380
>PRK05463 hypothetical protein; Provisional
Probab=27.82 E-value=1.2e+02 Score=22.05 Aligned_cols=53 Identities=11% Similarity=0.206 Sum_probs=33.1
Q ss_pred hhhHHHHHHHhhcCC-ceEEE-EEec--CCchhhhHhcCCC-cccEEEEEeCCeeeeee
Q psy5679 77 QLEPKISTVSETTSG-VEFVK-INVE--NGGGEIAREFEVQ-AVPTVIGFRNGDPVDTV 130 (149)
Q Consensus 77 ~~~~~l~~~~~~~~~-v~~~~-vd~~--~~~~~~~~~~~i~-~~Pt~~~~~~g~~~~~~ 130 (149)
+....|..+.+.++. --++. .+.. .. +.+....+|+ .+|.+-+|++|+.....
T Consensus 42 ~~A~DF~~FC~rNpkpCPLL~v~~~G~~~~-~~la~~~DIRTD~P~Y~vy~~G~l~~e~ 99 (262)
T PRK05463 42 DWAYDFLLFCQRNPKPCPLLDVTEPGSPEL-PLLGPDADIRTDVPRYRVYRDGELVEEV 99 (262)
T ss_pred HHHHHHHHHHhhCCCCCCceeecCCCCCcc-cccCCCcccccCCCceEEEECCEEeeec
Confidence 455677788888876 22222 2221 22 3445566776 58999999999876543
No 381
>PHA02513 V1 structural protein V1; Reviewed
Probab=27.57 E-value=32 Score=21.46 Aligned_cols=26 Identities=12% Similarity=0.165 Sum_probs=23.4
Q ss_pred EEeCCCChhHHhhhHHHHHHHhhcCC
Q psy5679 66 YFFKPSCGFCKQLEPKISTVSETTSG 91 (149)
Q Consensus 66 ~f~~~~C~~C~~~~~~l~~~~~~~~~ 91 (149)
.||..|.+.-..-...+-|+++..|.
T Consensus 33 if~qtwdgnii~sa~~fveva~~npk 58 (135)
T PHA02513 33 IFYQTWDGNIISSARRFVEVAKANPK 58 (135)
T ss_pred HHHHhcCchHHHHHHHHHHHHhcCCc
Confidence 48999999999999999999999885
No 382
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=27.53 E-value=1.2e+02 Score=16.89 Aligned_cols=71 Identities=8% Similarity=0.113 Sum_probs=39.4
Q ss_pred EeCCCChhHHhhhHHHHHHHhhcCCceEEEEEec----CCchhhhHhcCCCcccEEEEEeC--CeeeeeeeCCCCHHHHH
Q psy5679 67 FFKPSCGFCKQLEPKISTVSETTSGVEFVKINVE----NGGGEIAREFEVQAVPTVIGFRN--GDPVDTVVGNADQDVIQ 140 (149)
Q Consensus 67 f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~----~~~~~~~~~~~i~~~Pt~~~~~~--g~~~~~~~g~~~~~~l~ 140 (149)
+|...++.|++..-.+++..-.+ ....++.. .. +++.+......+|++.. .+ |..+ ..-..+.
T Consensus 4 Ly~~~~~~~~~v~~~l~~~gl~~---~~~~~~~~~~~~~~-~~~~~~~p~~~vP~l~~-~~~~g~~l------~eS~aI~ 72 (81)
T cd03048 4 LYTHGTPNGFKVSIMLEELGLPY---EIHPVDISKGEQKK-PEFLKINPNGRIPAIVD-HNGTPLTV------FESGAIL 72 (81)
T ss_pred EEeCCCCChHHHHHHHHHcCCCc---EEEEecCcCCcccC-HHHHHhCcCCCCCEEEe-CCCCceEE------EcHHHHH
Confidence 34333599999888777764443 44455542 22 34444445678999854 22 4332 2334466
Q ss_pred HHHHHHhc
Q psy5679 141 TLVSKLSQ 148 (149)
Q Consensus 141 ~~i~~~~~ 148 (149)
.+|.+...
T Consensus 73 ~yL~~~~~ 80 (81)
T cd03048 73 LYLAEKYD 80 (81)
T ss_pred HHHHHHhC
Confidence 66665543
No 383
>PF00708 Acylphosphatase: Acylphosphatase; InterPro: IPR001792 Acylphosphatase (3.6.1.7 from EC) is an enzyme of approximately 98 amino acid residues that specifically catalyses the hydrolysis of the carboxyl-phosphate bond of acylphosphates [], its substrates including 1,3-diphosphoglycerate and carbamyl phosphate []. The enzyme has a mainly beta-sheet structure with 2 short alpha-helical segments. It is distributed in a tissue-specific manner in a wide variety of species, although its physiological role is as yet unknown []: it may, however, play a part in the regulation of the glycolytic pathway and pyrimidine biosynthesis []. There are two known isozymes. One seems to be specific to muscular tissues, the other, called 'organ-common type', is found in many different tissues. While bacterial and archebacterial hypothetical proteins that are highly similar to that enzyme and that probably possess the same activity. These proteins include: Escherichia coli putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yccX). Bacillus subtilis putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yflL). Archaeoglobus fulgidus putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (O29440 from SWISSPROT). An acylphosphatase-like domain is also found in some prokaryotic hydrogenase maturation HypF carbamoyltransferases [, ].; PDB: 1APS_A 1GXT_A 1GXU_A 2HLT_A 2FHM_A 2HLU_A 3BR8_A 1ULR_A 3TRG_A 2BJD_A ....
Probab=27.38 E-value=1.2e+02 Score=17.74 Aligned_cols=39 Identities=18% Similarity=0.320 Sum_probs=23.9
Q ss_pred hhhhHhcCCCcccEEEEEeCCeeeeeeeCCCCHHHHHHHHHHH
Q psy5679 104 GEIAREFEVQAVPTVIGFRNGDPVDTVVGNADQDVIQTLVSKL 146 (149)
Q Consensus 104 ~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~ 146 (149)
..++.++++.++ +--..+|.......| +.+.+..+++.+
T Consensus 24 ~~~A~~~gl~G~--V~N~~dg~V~i~~~G--~~~~l~~f~~~l 62 (91)
T PF00708_consen 24 KRIARKLGLTGW--VRNLPDGSVEIEAEG--EEEQLEEFIKWL 62 (91)
T ss_dssp HHHHHHTT-EEE--EEE-TTSEEEEEEEE--EHHHHHHHHHHH
T ss_pred HHHHHHhCCceE--EEECCCCEEEEEEEe--CHHHHHHHHHHH
Confidence 356778888876 333467866667777 555666665544
No 384
>PF15379 DUF4606: Domain of unknown function (DUF4606)
Probab=26.66 E-value=71 Score=19.69 Aligned_cols=17 Identities=12% Similarity=0.477 Sum_probs=13.1
Q ss_pred CCCChhHHhhhHHHHHH
Q psy5679 69 KPSCGFCKQLEPKISTV 85 (149)
Q Consensus 69 ~~~C~~C~~~~~~l~~~ 85 (149)
++.|+.|.+-+..+.+.
T Consensus 31 ~s~Cp~C~kkraeLa~~ 47 (104)
T PF15379_consen 31 SSQCPSCNKKRAELAQS 47 (104)
T ss_pred cccChHHHHHHHHHHHH
Confidence 56799999987776544
No 385
>cd07973 Spt4 Transcription elongation factor Spt4. Spt4 is a transcription elongation factor. Three transcription-elongation factors Spt4, Spt5, and Spt6, are conserved among eukaryotes and are essential for transcription via the modulation of chromatin structure. It is known that Spt4, Spt5, and Spt6 are general transcription-elongation factors, controlling transcription both positively and negatively in important regulatory and developmental roles. Spt4 functions entirely in the context of the Spt4-Spt5 heterodimer and it has been found only as a complex to Spt5 in Yeast and Human. Spt4 is a small protein that has zinc finger at the N-terminus. Spt5 is a large protein that has several interesting structural features of an acidic N-terminus, a single NGN domain, five or six KOW domains, and a set of simple C-termianl repeats. Spt4 binds to Spt5 NGN domain. Unlike Spt5, Spt4 is not essential for viability in yeast, however Spt4 is critical for normal function of the Spt4-Spt5 compl
Probab=26.63 E-value=66 Score=19.63 Aligned_cols=52 Identities=19% Similarity=0.295 Sum_probs=28.6
Q ss_pred EeCCCChhHHhhh-------HHHHHHHhhcCCceEEEEEecCCchhhhHhcCCCc-ccEEEEE
Q psy5679 67 FFKPSCGFCKQLE-------PKISTVSETTSGVEFVKINVENGGGEIAREFEVQA-VPTVIGF 121 (149)
Q Consensus 67 f~~~~C~~C~~~~-------~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~~i~~-~Pt~~~~ 121 (149)
|....|+.|..+. ...+-....|.++. +.+|-+ . ..+++..++.. +|..+.+
T Consensus 18 f~~~gCpnC~~~l~~~g~~~~v~~~tT~~f~G~i-~i~dP~-~-SwVAk~l~i~~~~pG~YAi 77 (98)
T cd07973 18 FERDGCPNCEGYLDMKGNHERVYDCTSPNFEGII-ALMDPE-K-SWVARWQRIDKFVPGIYAI 77 (98)
T ss_pred ccCCCCCCCcchhccCCCccccccccCCCcceEE-EEECCc-h-hHHHHHhCCCCCCCCeEEE
Confidence 6778999996332 12223444555432 223433 3 47888888863 5555444
No 386
>COG4752 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.47 E-value=91 Score=20.75 Aligned_cols=25 Identities=16% Similarity=-0.013 Sum_probs=19.2
Q ss_pred hhhHHHHH-cCCCCEEEEEeCCCChh
Q psy5679 50 IDDFKQTI-RGRNPVLAYFFKPSCGF 74 (149)
Q Consensus 50 ~~~~~~~~-~~~~~~vv~f~~~~C~~ 74 (149)
-+.+...+ ..++|++++|.+-|--+
T Consensus 122 y~~lr~~I~e~dkp~LilfGTGwGlp 147 (190)
T COG4752 122 YSWLRNEIQERDKPWLILFGTGWGLP 147 (190)
T ss_pred HHHHHHHHhhcCCcEEEEecCCCCCC
Confidence 35555555 88999999999988644
No 387
>KOG0852|consensus
Probab=26.11 E-value=2.3e+02 Score=19.57 Aligned_cols=41 Identities=27% Similarity=0.263 Sum_probs=22.1
Q ss_pred hhhhHhcCCC----ccc---EEEEEeCCeeee-----eeeCCCCHHHHHHHHHH
Q psy5679 104 GEIAREFEVQ----AVP---TVIGFRNGDPVD-----TVVGNADQDVIQTLVSK 145 (149)
Q Consensus 104 ~~~~~~~~i~----~~P---t~~~~~~g~~~~-----~~~g~~~~~~l~~~i~~ 145 (149)
..+++.||+. +.+ .+++.++|.... .-.| .+.++....|+.
T Consensus 107 ~~IsrdyGvL~~~~G~~lRglfIId~~gi~R~it~NDlpvg-RSVdE~lRLvqA 159 (196)
T KOG0852|consen 107 HEISRDYGVLKEDEGIALRGLFIIDPDGILRQITINDLPVG-RSVDETLRLVQA 159 (196)
T ss_pred hhhHHhcCceecCCCcceeeeEEEccccceEEeeecccCCC-ccHHHHHHHHHH
Confidence 5778888874 344 233335554322 1123 566776666654
No 388
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=25.34 E-value=2.3e+02 Score=20.23 Aligned_cols=48 Identities=13% Similarity=0.254 Sum_probs=33.5
Q ss_pred ChhHHhhhHHHHHHHhhcCC-ceEEEEEecCCchhhhHhcCCCcccEEEEEeCCeeee
Q psy5679 72 CGFCKQLEPKISTVSETTSG-VEFVKINVENGGGEIAREFEVQAVPTVIGFRNGDPVD 128 (149)
Q Consensus 72 C~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~ 128 (149)
-.+|..+-..++++++++.. +.++--|++ ++..|.- .++.+++|+.+.
T Consensus 168 mkHsv~iMk~Lrrla~el~KtiviVlHDIN-----fAS~YsD----~IVAlK~G~vv~ 216 (252)
T COG4604 168 MKHSVQIMKILRRLADELGKTIVVVLHDIN-----FASCYSD----HIVALKNGKVVK 216 (252)
T ss_pred hHHHHHHHHHHHHHHHHhCCeEEEEEeccc-----HHHhhhh----heeeecCCEEEe
Confidence 37899999999999999987 444444433 3333332 477889998853
No 389
>PRK14429 acylphosphatase; Provisional
Probab=25.30 E-value=1.5e+02 Score=17.47 Aligned_cols=37 Identities=19% Similarity=0.206 Sum_probs=18.6
Q ss_pred hhhHhcCCCcccEEEEEeCCeeeeeeeCCCCHHHHHHHHHH
Q psy5679 105 EIAREFEVQAVPTVIGFRNGDPVDTVVGNADQDVIQTLVSK 145 (149)
Q Consensus 105 ~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~ 145 (149)
.++.++++.++-.= ..+|.......| +.+.|.+++..
T Consensus 23 ~~A~~~gl~G~V~N--~~dG~Vei~~qG--~~~~i~~f~~~ 59 (90)
T PRK14429 23 TKARALGVTGYVTN--CEDGSVEILAQG--SDPAVDNLIAW 59 (90)
T ss_pred HHHHHhCCEEEEEE--CCCCeEEEEEEe--CHHHHHHHHHH
Confidence 45666666654322 235655555666 44444444443
No 390
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=25.09 E-value=1.1e+02 Score=21.92 Aligned_cols=63 Identities=13% Similarity=0.162 Sum_probs=41.3
Q ss_pred ecchhhHHHHHcCCCCEEEEEeCCCChhHHhhhHHHHHHHhhcCCceEEEEEecCCchhhhHhcCC
Q psy5679 47 IEKIDDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEV 112 (149)
Q Consensus 47 i~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~~i 112 (149)
+.....+.+....+++++ -+.+.++.++.+...++++....+......++.++- ..+..+||+
T Consensus 208 Ip~~~~v~~A~~~g~pv~--~~~p~s~~a~~~~~la~ell~~~~~~~~~~~~~~~~-~~~~~~~~~ 270 (275)
T TIGR01287 208 VPRSNIVQKAEIRKMTVI--EYDPESEQANEYRELAKKIYENTEFVIPTPLTMDEL-EEILMKFGI 270 (275)
T ss_pred CCCChHHHHHHHcCCceE--EeCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCHHHH-HHHHHHHHH
Confidence 333345666666666653 346788888888888888877654455556666666 666666665
No 391
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=23.65 E-value=78 Score=17.42 Aligned_cols=14 Identities=14% Similarity=0.437 Sum_probs=11.4
Q ss_pred ccEEEEEeCCeeee
Q psy5679 115 VPTVIGFRNGDPVD 128 (149)
Q Consensus 115 ~Pt~~~~~~g~~~~ 128 (149)
.|++.+++||+.+.
T Consensus 12 ~P~v~W~kdg~~l~ 25 (67)
T cd05863 12 PPEFQWYKDGKLIS 25 (67)
T ss_pred CCEEEEEECCEECc
Confidence 57888999998774
No 392
>PF11317 DUF3119: Protein of unknown function (DUF3119); InterPro: IPR021467 This family of proteins has no known function.
Probab=23.58 E-value=2e+02 Score=18.16 Aligned_cols=35 Identities=9% Similarity=0.153 Sum_probs=27.9
Q ss_pred CcccEEEEEeCCeeeeeeeCCCCHHHHHHHHHHHh
Q psy5679 113 QAVPTVIGFRNGDPVDTVVGNADQDVIQTLVSKLS 147 (149)
Q Consensus 113 ~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~ 147 (149)
.++|.+++|++-+-++...--.|..++.+-+++..
T Consensus 81 p~~PiL~YFkE~qsiHFlPiiFd~~~L~~~l~~r~ 115 (116)
T PF11317_consen 81 PGFPILFYFKETQSIHFLPIIFDPKQLREQLEERC 115 (116)
T ss_pred CCCCEEEEEecCCcceeeeeecCHHHHHHHHHHhC
Confidence 48999999998887777666678888888777653
No 393
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=23.56 E-value=1.4e+02 Score=16.24 Aligned_cols=56 Identities=9% Similarity=-0.078 Sum_probs=33.4
Q ss_pred EEEeCCCChhHHhhhHHHHHHHhhcCCceEEEEEecC---CchhhhHhcCCCcccEEEEEeCCe
Q psy5679 65 AYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVEN---GGGEIAREFEVQAVPTVIGFRNGD 125 (149)
Q Consensus 65 v~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~---~~~~~~~~~~i~~~Pt~~~~~~g~ 125 (149)
.+++.+.++.|.++.-.+++..-.+ .+..++... ..+++.+......+|++.. +|.
T Consensus 2 ~l~~~~~s~~~~~v~~~L~~~~l~~---~~~~~~~~~~~~~~~~~~~~nP~~~vP~L~~--~~~ 60 (73)
T cd03047 2 TIWGRRSSINVQKVLWLLDELGLPY---ERIDAGGQFGGLDTPEFLAMNPNGRVPVLED--GDF 60 (73)
T ss_pred EEEecCCCcchHHHHHHHHHcCCCC---EEEEeccccccccCHHHHhhCCCCCCCEEEE--CCE
Confidence 3566777888888887777764443 344444321 1134555455678999954 454
No 394
>PF02042 RWP-RK: RWP-RK domain; InterPro: IPR003035 This domain is named RWP-RK after a conserved motif at the C terminus of the domain. The domain is found in algal minus dominance proteins as well as plant proteins involved in nitrogen-controlled development [].
Probab=22.62 E-value=57 Score=17.36 Aligned_cols=18 Identities=17% Similarity=0.159 Sum_probs=13.7
Q ss_pred ecCCchhhhHhcCCCcccE
Q psy5679 99 VENGGGEIAREFEVQAVPT 117 (149)
Q Consensus 99 ~~~~~~~~~~~~~i~~~Pt 117 (149)
.+.- ...|+++||..+|.
T Consensus 29 ~T~L-Kr~CR~~GI~RWP~ 46 (52)
T PF02042_consen 29 VTTL-KRRCRRLGIPRWPY 46 (52)
T ss_pred HHHH-HHHHHHcCCCCCCc
Confidence 3444 67899999999984
No 395
>TIGR00211 glyS glycyl-tRNA synthetase, tetrameric type, beta subunit. The glycyl-tRNA synthetases differ even among the eubacteria in oligomeric structure. In Escherichia coli and most others, it is a heterodimer of two alpha chains and two beta chains, encoded by tandem genes. The genes are similar, but fused, in Chlamydia trachomatis. By contrast, the glycyl-tRNA synthetases of Thermus thermophilus and of archaea and eukaryotes differ considerably; they are homodimeric, mutually similar, and not detected by this model.
Probab=22.54 E-value=3e+02 Score=23.24 Aligned_cols=64 Identities=16% Similarity=0.225 Sum_probs=34.9
Q ss_pred EEEecchhhHHHHHcCCCCEEEEEeCCCChhHH--hhhHHHHHHHhhcCCceEEEEEecCCchhhhHhcCCCcccEEEE
Q psy5679 44 YLIIEKIDDFKQTIRGRNPVLAYFFKPSCGFCK--QLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTVIG 120 (149)
Q Consensus 44 v~~i~~~~~~~~~~~~~~~~vv~f~~~~C~~C~--~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~~i~~~Pt~~~ 120 (149)
..++.+.++|.+.+.++ .|++.+ ..+ .....++++++...+ . +..++. -+-+--++-.+|+.+.
T Consensus 196 ~i~i~~a~~Y~~~L~~~-~Vi~d~------~eRk~~I~~qi~~~a~~~g~-~---v~~d~~--LLeEVt~LVE~P~~l~ 261 (691)
T TIGR00211 196 EVSIESPDAYPEQLKEN-HVIADP------KERKAMILQQIETLAAKLGG-I---ADIDED--LLDEVVSLVEYPTALL 261 (691)
T ss_pred CeEeCCHHHHHHHHhhC-CEECCH------HHHHHHHHHHHHHHHHHcCC-e---ecCCHH--HHHHHHhccCCCeEEE
Confidence 56778899999998555 666633 332 234455666666542 1 122221 2223335566666554
No 396
>KOG4079|consensus
Probab=22.46 E-value=1.1e+02 Score=19.99 Aligned_cols=28 Identities=18% Similarity=0.183 Sum_probs=19.9
Q ss_pred eCCeeeeeeeCCCCHHHHHHHHHHHhcC
Q psy5679 122 RNGDPVDTVVGNADQDVIQTLVSKLSQK 149 (149)
Q Consensus 122 ~~g~~~~~~~g~~~~~~l~~~i~~~~~k 149 (149)
.+|+.+-.-....+.+++++.|.+.++|
T Consensus 82 ddGr~vL~Dld~~~r~eI~~hl~K~lGK 109 (169)
T KOG4079|consen 82 DDGREVLFDLDGMKREEIEKHLAKTLGK 109 (169)
T ss_pred cCcceEEEEcccccHHHHHHHHHHHhCc
Confidence 5777664333337889999999888765
No 397
>PF02092 tRNA_synt_2f: Glycyl-tRNA synthetase beta subunit; InterPro: IPR015944 The aminoacyl-tRNA synthetases (6.1.1 from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold and are mostly monomeric, while class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet formation, flanked by alpha-helices [], and are mostly dimeric or multimeric. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic aci, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. The 10 class I synthetases are considered to have in common the catalytic domain structure based on the Rossmann fold, which is totally different from the class II catalytic domain structure. The class I synthetases are further divided into three subclasses, a, b and c, according to sequence homology. No conserved structural features for tRNA recognition by class I synthetases have been established. Class-II tRNA synthetases do not share a high degree of similarity, however at least three conserved regions are present [, , ]. In most eubacteria, glycyl-tRNA synthetase (6.1.1.14 from EC) is an alpha2/beta2 tetramer composed of 2 different subunits [, , ] while in archaea, eukaryota and some eubacteria, glycyl-tRNA synthetase is an alpha2 dimer (see IPR002315 from INTERPRO). This entry represents the beta subunit of the tetrameric enzyme. What is most interesting is the lack of similarity between the two types: divergence at the sequence level is so great that it is impossible to infer descent from common genes. The alpha (see IPR002310 from INTERPRO) and beta subunits also lack significant sequence similarity. However, they are translated from a single mRNA [], and a single chain glycyl-tRNA synthetase from Chlamydia trachomatis has been found to have significant similarity with both domains, suggesting divergence from a single polypeptide chain []. This entry represents the beta subunit of glycyl-tRNA synthetase.; GO: 0000166 nucleotide binding, 0004820 glycine-tRNA ligase activity, 0005524 ATP binding, 0006426 glycyl-tRNA aminoacylation, 0005737 cytoplasm
Probab=22.38 E-value=2.7e+02 Score=22.82 Aligned_cols=42 Identities=12% Similarity=0.169 Sum_probs=28.8
Q ss_pred EEEecchhhHHHHHcCCCCEEEEEeCCCChhHHhhhHHHHHHHhhcC
Q psy5679 44 YLIIEKIDDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTS 90 (149)
Q Consensus 44 v~~i~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~ 90 (149)
...+++.++|.+.+.++ .|++.+ -.-.......++++++...
T Consensus 191 ~i~i~~a~~Y~~~L~~~-~VIvd~----~~Rk~~I~~~i~~~a~~~~ 232 (548)
T PF02092_consen 191 PIEINSADDYEEVLKKN-FVIVDP----EERKEIIREQINKLAKELG 232 (548)
T ss_pred CeEeCCHHHHHHHHhhC-CEECCH----HHHHHHHHHHHHHHHHHcC
Confidence 56677889999999555 666644 3345566667777777764
No 398
>PTZ00151 translationally controlled tumor-like protein; Provisional
Probab=22.33 E-value=1.3e+02 Score=20.49 Aligned_cols=42 Identities=17% Similarity=0.121 Sum_probs=21.9
Q ss_pred HHHHhhcCCceEEEEE---ecCCchhhhHhcCCCcccEEEEEeCCe
Q psy5679 83 STVSETTSGVEFVKIN---VENGGGEIAREFEVQAVPTVIGFRNGD 125 (149)
Q Consensus 83 ~~~~~~~~~v~~~~vd---~~~~~~~~~~~~~i~~~Pt~~~~~~g~ 125 (149)
..+...+++.+|..-. .+.. -.++.--+-..+|.++++++|=
T Consensus 123 K~il~~Fkd~qFf~GeSmd~dgm-v~l~~Yredg~tP~~~f~KdGL 167 (172)
T PTZ00151 123 KHILENFDDFEFYLGESLDCEAG-LIYGYYKGEELAPRFVYIKDGL 167 (172)
T ss_pred HHHHHhcCCceEeecCCCCCCcc-EEEEeecCCCcceEEEEEcccc
Confidence 3444556566665422 2222 1222111234699999999983
No 399
>PRK14451 acylphosphatase; Provisional
Probab=22.23 E-value=1.7e+02 Score=17.30 Aligned_cols=38 Identities=13% Similarity=0.247 Sum_probs=19.8
Q ss_pred hhhHhcCCCcccEEEEEeCCeeeeeeeCCCCHHHHHHHHHHH
Q psy5679 105 EIAREFEVQAVPTVIGFRNGDPVDTVVGNADQDVIQTLVSKL 146 (149)
Q Consensus 105 ~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~ 146 (149)
.++.++++.++-.= ..||.......| +.+.+.+++..+
T Consensus 24 ~~A~~~gl~G~V~N--~~dG~Vei~~qG--~~~~i~~f~~~l 61 (89)
T PRK14451 24 KLAEQLMISGWARN--LADGRVEVFACG--KEDKLEEFYTWL 61 (89)
T ss_pred HHHHHhCCEEEEEE--CCCCCEEEEEEE--CHHHHHHHHHHH
Confidence 45666666654322 236655555666 445555555443
No 400
>KOG0867|consensus
Probab=22.21 E-value=1.6e+02 Score=20.56 Aligned_cols=54 Identities=9% Similarity=0.078 Sum_probs=36.0
Q ss_pred EEEEeCCCChhHHhhhHHHHHHHhhcCCceEEEEEec---CCchhhhHhcCCCcccEEEE
Q psy5679 64 LAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVE---NGGGEIAREFEVQAVPTVIG 120 (149)
Q Consensus 64 vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~vd~~---~~~~~~~~~~~i~~~Pt~~~ 120 (149)
+.+|+.+..+.|+.+.-.+.++.-.+ .+..+|.. +..+++....-...+|++.-
T Consensus 3 ~~ly~~~~s~~~r~vl~~~~~~~l~~---e~~~v~~~~ge~~~pefl~~nP~~kVP~l~d 59 (226)
T KOG0867|consen 3 LKLYGHLGSPPARAVLIAAKELGLEV---ELKPVDLVKGEQKSPEFLKLNPLGKVPALED 59 (226)
T ss_pred ceEeecCCCcchHHHHHHHHHcCCce---eEEEeeccccccCCHHHHhcCcCCCCCeEec
Confidence 45788888888999887776664444 44444443 22256666777788998865
No 401
>PF07293 DUF1450: Protein of unknown function (DUF1450); InterPro: IPR009910 This entry consists of several hypothetical bacterial proteins of around 80 residues in length representing two families. Members contain four highly conserved cysteine residues and their function is unknown.
Probab=21.88 E-value=1.8e+02 Score=16.92 Aligned_cols=57 Identities=7% Similarity=0.117 Sum_probs=35.7
Q ss_pred hHHHHHHHhhcCCceEEEEEecCCchhhhHhcCCCcccEEEEEeCCeeeeeeeCCCCHHHHHHHHHHHhc
Q psy5679 79 EPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTVIGFRNGDPVDTVVGNADQDVIQTLVSKLSQ 148 (149)
Q Consensus 79 ~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~~ 148 (149)
...++++. +.+++.++..+|-.. | |....-.+ .+.||+.+ .| .+.++|.+.|.+.++
T Consensus 17 ~~~~~~Le-~~p~~~Vie~gCl~~----C---g~C~~~pF-AlVnG~~V---~A-~t~eeL~~kI~~~i~ 73 (78)
T PF07293_consen 17 DQVYEKLE-KDPDIDVIEYGCLSY----C---GPCAKKPF-ALVNGEIV---AA-ETAEELLEKIKEKIE 73 (78)
T ss_pred HHHHHHHh-cCCCccEEEcChhhh----C---cCCCCCcc-EEECCEEE---ec-CCHHHHHHHHHHHHh
Confidence 44566665 457788888887655 2 22222233 33489765 34 688888888888765
No 402
>PRK14449 acylphosphatase; Provisional
Probab=21.64 E-value=1.9e+02 Score=17.07 Aligned_cols=38 Identities=16% Similarity=0.258 Sum_probs=19.3
Q ss_pred hhhHhcCCCcccEEEEEeCCeeeeeeeCCCCHHHHHHHHHHH
Q psy5679 105 EIAREFEVQAVPTVIGFRNGDPVDTVVGNADQDVIQTLVSKL 146 (149)
Q Consensus 105 ~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~ 146 (149)
.++.++++.++ +--..+|...-...| +.+.+.++++.+
T Consensus 24 ~~A~~lgl~G~--V~N~~dG~Vei~~~G--~~~~v~~f~~~l 61 (90)
T PRK14449 24 QKAVSLGITGY--AENLYDGSVEVVAEG--DEENIKELINFI 61 (90)
T ss_pred HHHHHcCCEEE--EEECCCCeEEEEEEe--CHHHHHHHHHHH
Confidence 45556666655 222345655445555 444455555443
No 403
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=21.51 E-value=97 Score=24.81 Aligned_cols=32 Identities=16% Similarity=0.380 Sum_probs=23.2
Q ss_pred CChhHHh---------hhHHHHHHHhhcCCceEEEEEecCC
Q psy5679 71 SCGFCKQ---------LEPKISTVSETTSGVEFVKINVENG 102 (149)
Q Consensus 71 ~C~~C~~---------~~~~l~~~~~~~~~v~~~~vd~~~~ 102 (149)
.||.|.. .....+++.+.+++..+..+|.|..
T Consensus 255 ~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d~~ 295 (505)
T TIGR00595 255 TCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARIDSDTT 295 (505)
T ss_pred CCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEEecccc
Confidence 4666654 3556678888898888888888754
No 404
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=21.43 E-value=76 Score=18.21 Aligned_cols=14 Identities=29% Similarity=0.489 Sum_probs=11.6
Q ss_pred ccEEEEEeCCeeee
Q psy5679 115 VPTVIGFRNGDPVD 128 (149)
Q Consensus 115 ~Pt~~~~~~g~~~~ 128 (149)
.|++.+|+||+.+.
T Consensus 12 ~Pti~W~kng~~l~ 25 (79)
T cd05855 12 KPTLQWFHEGAILN 25 (79)
T ss_pred CCceEEEECCEECC
Confidence 56899999998774
No 405
>PRK14430 acylphosphatase; Provisional
Probab=21.19 E-value=2e+02 Score=17.14 Aligned_cols=39 Identities=10% Similarity=0.115 Sum_probs=22.7
Q ss_pred hhhhHhcCCCcccEEEEEeCCeeeeeeeCCCCHHHHHHHHHHH
Q psy5679 104 GEIAREFEVQAVPTVIGFRNGDPVDTVVGNADQDVIQTLVSKL 146 (149)
Q Consensus 104 ~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~ 146 (149)
..++.++++.++-. -..||+......| +.+.|..++..+
T Consensus 24 ~~~A~~lgl~G~Vr--N~~dGsVei~~qG--~~~~i~~f~~~l 62 (92)
T PRK14430 24 ADAADDLGLGGWVR--NRADGTVEVMASG--TVRQLEALRAWM 62 (92)
T ss_pred HHHHHHhCCEEEEE--ECCCCcEEEEEEc--CHHHHHHHHHHH
Confidence 35677778776542 2257766556777 455555555443
No 406
>COG0295 Cdd Cytidine deaminase [Nucleotide transport and metabolism]
Probab=21.05 E-value=2e+02 Score=18.67 Aligned_cols=7 Identities=57% Similarity=1.640 Sum_probs=3.6
Q ss_pred ChhHHhh
Q psy5679 72 CGFCKQL 78 (149)
Q Consensus 72 C~~C~~~ 78 (149)
|+.|+++
T Consensus 88 CG~CRQ~ 94 (134)
T COG0295 88 CGACRQV 94 (134)
T ss_pred cHHHHHH
Confidence 5555544
No 407
>PRK14438 acylphosphatase; Provisional
Probab=20.55 E-value=2e+02 Score=17.00 Aligned_cols=38 Identities=16% Similarity=0.235 Sum_probs=20.5
Q ss_pred hhhHhcCCCcccEEEEEeCCeeeeeeeCCCCHHHHHHHHHHH
Q psy5679 105 EIAREFEVQAVPTVIGFRNGDPVDTVVGNADQDVIQTLVSKL 146 (149)
Q Consensus 105 ~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~ 146 (149)
.++.++++.++-.= ..+|.......| +.+.|.++++.+
T Consensus 24 ~~A~~~gl~G~V~N--~~dG~Vei~~qG--~~~~i~~f~~~l 61 (91)
T PRK14438 24 QTAQRLNVSGWVKN--LPNGSVQGCFEG--EETDVAALIDWC 61 (91)
T ss_pred HHHHHcCCEEEEEE--CCCCEEEEEEEE--CHHHHHHHHHHH
Confidence 45667777654322 246765556666 444455555443
Done!