RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5679
(149 letters)
>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, unknown function;
2.90A {Bacillus cereus}
Length = 105
Score = 92.0 bits (229), Expect = 2e-25
Identities = 23/103 (22%), Positives = 46/103 (44%), Gaps = 1/103 (0%)
Query: 46 IIEKIDDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGE 105
+ I++ I + VL + +CG C + K++ V E + VE ++I +++ E
Sbjct: 4 TFKTIEELATYIEEQQLVLLFIKTENCGVCDVMLRKVNYVLENYNYVEKIEILLQD-MQE 62
Query: 106 IAREFEVQAVPTVIGFRNGDPVDTVVGNADQDVIQTLVSKLSQ 148
IA + V PTV+ F NG + + ++ + +
Sbjct: 63 IAGRYAVFTGPTVLLFYNGKEILRESRFISLENLERTIQLFEE 105
>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized,
dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A
2oe0_A
Length = 114
Score = 88.2 bits (219), Expect = 1e-23
Identities = 26/110 (23%), Positives = 58/110 (52%), Gaps = 4/110 (3%)
Query: 38 QAVQMAYLIIEKIDDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKI 97
+ + + + +F+ I+ + ++ F+ CG CK ++P ++ + + V FVK
Sbjct: 8 HSSYTSITKLTNLTEFRNLIKQNDKLVIDFYATWCGPCKMMQPHLTKLIQAYPDVRFVKC 67
Query: 98 NV-ENGGGEIAREFEVQAVPTVIGFRNGDPVDTVVGNADQDVIQTLVSKL 146
+V E+ +IA+E EV A+PT + ++G + ++G A+ ++ + L
Sbjct: 68 DVDES--PDIAKECEVTAMPTFVLGKDGQLIGKIIG-ANPTALEKGIKDL 114
>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB:
2l6d_A
Length = 110
Score = 87.0 bits (216), Expect = 3e-23
Identities = 19/108 (17%), Positives = 39/108 (36%), Gaps = 3/108 (2%)
Query: 42 MAYLIIEKIDDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINV-E 100
M+ + + G + + +F K C CK +E + V ++
Sbjct: 1 MSAIRDITTEAGMAHFEGLSDAIVFFHKNLCPHCKNMEKVLDKFGARAPQVAISSVDSEA 60
Query: 101 NGGGEIAREFEVQAVPTVIGFRNGDPVDTVVGNADQDVIQTLVSKLSQ 148
E+ +E + VPT++ R+G G + +Q L + +
Sbjct: 61 R--PELMKELGFERVPTLVFIRDGKVAKVFSGIMNPRELQALYASIHH 106
>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure
initiative structural genomics of pathogenic protozoa
consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1
Length = 112
Score = 87.0 bits (216), Expect = 3e-23
Identities = 28/106 (26%), Positives = 56/106 (52%), Gaps = 3/106 (2%)
Query: 42 MAYLIIEKIDDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVEN 101
M ++ + +F I V+ FF CG CK++ P S+T + + F+K++V+
Sbjct: 9 MVKIVTSQ-AEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDVDE 67
Query: 102 GGGEIAREFEVQAVPTVIGFRNGDPVDTVVGNADQDVIQTLVSKLS 147
E+ + + ++PT ++NG VDT++G A+ ++ L+ K +
Sbjct: 68 -VSEVTEKENITSMPTFKVYKNGSSVDTLLG-ANDSALKQLIEKYA 111
>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm,
deoxyribonucleotide synthesis, golgi apparatus,
membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB:
3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B
Length = 109
Score = 85.4 bits (212), Expect = 9e-23
Identities = 33/107 (30%), Positives = 53/107 (49%), Gaps = 5/107 (4%)
Query: 42 MAYLIIEKIDDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINV-E 100
M +F I V+ F+ CG CK + P I SE +F K++V E
Sbjct: 7 MVTQFKTA-SEFDSAIAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQADFYKLDVDE 65
Query: 101 NGGGEIAREFEVQAVPTVIGFRNGDPVDTVVGNADQDVIQTLVSKLS 147
G++A++ EV A+PT++ F+NG V VVG A+ I+ ++ +
Sbjct: 66 L--GDVAQKNEVSAMPTLLLFKNGKEVAKVVG-ANPAAIKQAIAANA 109
>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A
{Trypanosoma} SCOP: c.47.1.1
Length = 125
Score = 85.5 bits (212), Expect = 1e-22
Identities = 24/113 (21%), Positives = 53/113 (46%), Gaps = 4/113 (3%)
Query: 38 QAVQMAYLIIEKIDDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKI 97
+A + + + ++ F+ + +A+F CG CK +E + ++ V+F K+
Sbjct: 15 RARYPSVVDVYSVEQFRNIMSEDILTVAWFTAVWCGPCKTIERPMEKIAYEFPTVKFAKV 74
Query: 98 NV-ENGGGEIAREFEVQAVPTVIGFRNGDPVDTVVGNADQDVIQTLVSKLSQK 149
+ N EI + V +PT I R+G + V+G A+ +++ + + +
Sbjct: 75 DADNN--SEIVSKCRVLQLPTFIIARSGKMLGHVIG-ANPGMLRQKLRDIIKD 124
>1gh2_A Thioredoxin-like protein; redox-active center, electron transport;
2.22A {Homo sapiens} SCOP: c.47.1.1
Length = 107
Score = 83.9 bits (208), Expect = 4e-22
Identities = 23/109 (21%), Positives = 43/109 (39%), Gaps = 4/109 (3%)
Query: 42 MAYLIIEKIDDFKQTIR--GRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINV 99
+ + DF+ + G + F CG C ++ P S++S F++++V
Sbjct: 1 VGVKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDV 60
Query: 100 ENGGGEIAREFEVQAVPTVIGFRNGDPVDTVVGNADQDVIQTLVSKLSQ 148
A + A PT FRN +D G AD ++ + + +
Sbjct: 61 HQCQ-GTAATNNISATPTFQFFRNKVRIDQYQG-ADAVGLEEKIKQHLE 107
>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP:
c.47.1.1
Length = 113
Score = 83.1 bits (206), Expect = 1e-21
Identities = 30/99 (30%), Positives = 54/99 (54%), Gaps = 4/99 (4%)
Query: 51 DDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINV-ENGGGEIARE 109
+ F++ + ++ F C CK + P + +++ V F+K++V E +A E
Sbjct: 17 EHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFPNVTFLKVDVDEL--KAVAEE 74
Query: 110 FEVQAVPTVIGFRNGDPVDTVVGNADQDVIQTLVSKLSQ 148
+ V+A+PT I ++G VD VG AD+D + TLV+K +
Sbjct: 75 WNVEAMPTFIFLKDGKLVDKTVG-ADKDGLPTLVAKHAT 112
>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} PDB: 3m9k_A
2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A
1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A*
1cqg_A 1cqh_A 1mdi_A ...
Length = 105
Score = 81.9 bits (203), Expect = 2e-21
Identities = 29/102 (28%), Positives = 57/102 (55%), Gaps = 4/102 (3%)
Query: 47 IEKIDDFKQTIR--GRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGG 104
IE F++ + G V+ F CG CK ++P ++SE S V F++++V++
Sbjct: 5 IESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQ- 63
Query: 105 EIAREFEVQAVPTVIGFRNGDPVDTVVGNADQDVIQTLVSKL 146
++A E EV+++PT F+ G V G A+++ ++ +++L
Sbjct: 64 DVASESEVKSMPTFQFFKKGQKVGEFSG-ANKEKLEATINEL 104
>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine
nucleotide disulfide oxidoreductase, electron TRAN
oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB:
3qfb_C*
Length = 116
Score = 82.0 bits (203), Expect = 2e-21
Identities = 28/102 (27%), Positives = 56/102 (54%), Gaps = 4/102 (3%)
Query: 47 IEKIDDFKQTIR--GRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGG 104
IE F++ + G V+ F CG K ++P ++SE S V F++++V++
Sbjct: 16 IESKTAFQEALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSNVIFLEVDVDDCQ- 74
Query: 105 EIAREFEVQAVPTVIGFRNGDPVDTVVGNADQDVIQTLVSKL 146
++A E EV+++PT F+ G V G A+++ ++ +++L
Sbjct: 75 DVASECEVKSMPTFQFFKKGQKVGEFSG-ANKEKLEATINEL 115
>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola
hepatica}
Length = 104
Score = 81.1 bits (201), Expect = 3e-21
Identities = 26/103 (25%), Positives = 54/103 (52%), Gaps = 6/103 (5%)
Query: 46 IIEKIDDFKQTIR--GRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINV-ENG 102
++ D ++ I ++ FF CG C+ + PK+ +++ VEF K++V +N
Sbjct: 3 VLATAADLEKLINENKGRLIVVDFFAQWCGPCRNIAPKVEALAKEIPEVEFAKVDVDQNE 62
Query: 103 GGEIAREFEVQAVPTVIGFRNGDPVDTVVGNADQDVIQTLVSK 145
E A ++ V A+PT + ++G VD G A++ ++ +++
Sbjct: 63 --EAAAKYSVTAMPTFVFIKDGKEVDRFSG-ANETKLRETITR 102
>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A
Length = 153
Score = 81.1 bits (200), Expect = 1e-20
Identities = 22/103 (21%), Positives = 52/103 (50%), Gaps = 4/103 (3%)
Query: 47 IEKIDDFKQTIR--GRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGG 104
+ F++ +R ++ ++ +F+ P C Q+ ++ +++ V FVK+ E
Sbjct: 17 VGSAGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKELPQVSFVKLEAEGVP- 75
Query: 105 EIAREFEVQAVPTVIGFRNGDPVDTVVGNADQDVIQTLVSKLS 147
E++ ++E+ +VPT + F+N +D + G A + V + +
Sbjct: 76 EVSEKYEISSVPTFLFFKNSQKIDRLDG-AHAPELTKKVQRHA 117
>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE,
fungi, epitope, allergen; 1.41A {Malassezia sympodialis}
Length = 121
Score = 80.1 bits (198), Expect = 1e-20
Identities = 40/121 (33%), Positives = 65/121 (53%), Gaps = 6/121 (4%)
Query: 30 RAHLPNLIQAVQMAYLIIEKIDDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETT 89
+H + + + +I D FKQ G V+ F+ CG CK + P +S+T
Sbjct: 3 GSHHHHHHLVPRGSVQVISSYDQFKQVTGGDKVVVIDFWATWCGPCKMIGPVFEKISDTP 62
Query: 90 SG--VEFVKINV-ENGGGEIAREFEVQAVPTVIGFRNGDPVDTVVGNADQDVIQTLVSKL 146
+G V F K++V E +IA+E ++A+PT + F+NG +DTVVG AD +Q +++
Sbjct: 63 AGDKVGFYKVDVDEQS--QIAQEVGIRAMPTFVFFKNGQKIDTVVG-ADPSKLQAAITQH 119
Query: 147 S 147
S
Sbjct: 120 S 120
>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP:
c.47.1.1
Length = 124
Score = 80.1 bits (198), Expect = 1e-20
Identities = 27/120 (22%), Positives = 45/120 (37%), Gaps = 3/120 (2%)
Query: 30 RAHLPNLIQAVQMAYLIIEKIDDFKQTIR--GRNPVLAYFFKPSCGFCKQLEPKISTVSE 87
L + + D F ++ G PV+ F CG CK + PK ++E
Sbjct: 5 ELALGTQEMEAIVGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAE 64
Query: 88 TTSGVEFVKINVENGGGEIAREFEVQAVPTVIGFRNGDPVDTVVGNADQDVIQTLVSKLS 147
V F+K++ +A+E ++ VPT + V V G A D + +
Sbjct: 65 EYLDVIFLKLDCNQENKTLAKELGIRVVPTFKILKENSVVGEVTG-AKYDKLLEAIQAAR 123
>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex,
iron-sulfur, electron transport; 1.65A {Spinacia
oleracea} PDB: 2pvo_C 1f9m_A
Length = 111
Score = 80.1 bits (198), Expect = 2e-20
Identities = 25/99 (25%), Positives = 41/99 (41%), Gaps = 3/99 (3%)
Query: 51 DDFKQTIR--GRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAR 108
D F ++ G PV+ F CG K + PK ++E V F+K++ +A+
Sbjct: 13 DTFWPIVKAAGDKPVVLDMFTQWCGPSKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAK 72
Query: 109 EFEVQAVPTVIGFRNGDPVDTVVGNADQDVIQTLVSKLS 147
E ++ VPT + V V G A D + +
Sbjct: 73 ELGIRVVPTFKILKENSVVGEVTG-AKYDKLLEAIQAAR 110
>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure
initiative, CESG, center for eukaryotic structural
genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1
Length = 124
Score = 79.0 bits (195), Expect = 5e-20
Identities = 24/96 (25%), Positives = 51/96 (53%), Gaps = 4/96 (4%)
Query: 51 DDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINV-ENGGGEIARE 109
+ ++ + V+ F CG C+ + P + +++ V F+K++ E +A +
Sbjct: 29 EQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVLFLKVDTDEL--KSVASD 86
Query: 110 FEVQAVPTVIGFRNGDPVDTVVGNADQDVIQTLVSK 145
+ +QA+PT + + G +D VVG A +D +Q+ ++K
Sbjct: 87 WAIQAMPTFMFLKEGKILDKVVG-AKKDELQSTIAK 121
>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A
{Schistosoma mansoni} PDB: 2xbq_A 2xbi_A
Length = 117
Score = 78.5 bits (194), Expect = 5e-20
Identities = 33/108 (30%), Positives = 56/108 (51%), Gaps = 6/108 (5%)
Query: 42 MAYLI-IEKIDDFKQTIR--GRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKIN 98
M+ LI +++ D + + V+ FF CG CK + P +SE + FVK++
Sbjct: 12 MSELIELKQDGDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKYDAI-FVKVD 70
Query: 99 VENGGGEIAREFEVQAVPTVIGFRNGDPVDTVVGNADQDVIQTLVSKL 146
V+ E AR++ + A+PT I +NG+ V VVG A ++ ++ K
Sbjct: 71 VDKLE-ETARKYNISAMPTFIAIKNGEKVGDVVG-ASIAKVEDMIKKF 116
>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein
disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum
vulgare var} PDB: 2vm2_A
Length = 118
Score = 78.5 bits (194), Expect = 6e-20
Identities = 27/107 (25%), Positives = 50/107 (46%), Gaps = 8/107 (7%)
Query: 47 IEKIDDFKQTI----RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINV-EN 101
+F + V+ F CG C+ + P + ++ G F+K++V E
Sbjct: 11 CHTKQEFDTHMANGKDTGKLVIIDFTASWCGPCRVIAPVFAEYAKKFPGAIFLKVDVDEL 70
Query: 102 GGGEIAREFEVQAVPTVIGFRNGDPVDTVVGNADQDVIQTLVSKLSQ 148
++A + V+A+PT + ++G+ VD+VVG +D I T + L
Sbjct: 71 K--DVAEAYNVEAMPTFLFIKDGEKVDSVVG-GRKDDIHTKIVALMG 114
>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport,
redox- active center, transport, oxidoreductase; HET:
CME; 1.50A {Saccharomyces cerevisiae}
Length = 112
Score = 78.2 bits (193), Expect = 7e-20
Identities = 28/108 (25%), Positives = 41/108 (37%), Gaps = 9/108 (8%)
Query: 47 IEKIDDFKQTIR---GRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG--VEFVKINV-E 100
I + F G ++ YF CK L+ +S S V F+ I+ E
Sbjct: 5 INDQEQFTYLTTTAAGDKLIVLYFHTSWAEPCKALKQVFEAISNEPSNSNVSFLSIDADE 64
Query: 101 NGGGEIAREFEVQAVPTVIGFRNGDPVDTVVGNADQDVIQTLVSKLSQ 148
N EI+ FE+ AVP I G + + G AD +L+
Sbjct: 65 NS--EISELFEISAVPYFIIIHKGTILKELSG-ADPKEYVSLLEDCKN 109
>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase,
thioredoxin-fold, protein disulfide reductase; 1.70A
{Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*
Length = 122
Score = 78.6 bits (194), Expect = 7e-20
Identities = 24/96 (25%), Positives = 47/96 (48%), Gaps = 2/96 (2%)
Query: 53 FKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEV 112
++ + V+ F CG C+ + P + +++ F+K++V+ IA +F V
Sbjct: 27 IEEANTAKKLVVIDFTASWCGPCRIMAPVFADLAKKFPNAVFLKVDVDE-LKPIAEQFSV 85
Query: 113 QAVPTVIGFRNGDPVDTVVGNADQDVIQTLVSKLSQ 148
+A+PT + + GD D VVG A ++ + V +
Sbjct: 86 EAMPTFLFMKEGDVKDRVVG-AIKEELTAKVGLHAA 120
>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm,
redox-active center, transport, oxidoreductase; 1.60A
{Populus trichocarpa x populusdeltoides} PDB: 3d21_A
Length = 139
Score = 78.7 bits (194), Expect = 9e-20
Identities = 27/108 (25%), Positives = 51/108 (47%), Gaps = 6/108 (5%)
Query: 46 IIEKIDDFKQTI----RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVEN 101
+I + + Q + R VLA F CG +Q+ P +SE + F+ I+V+
Sbjct: 28 LITTKERWDQKLSEASRDGKIVLANFSARWCGPSRQIAPYYIELSENYPSLMFLVIDVDE 87
Query: 102 GGGEIAREFEVQAVPTVIGFRNGDPVDTVVGNADQDVIQTLVSKLSQK 149
+ + +E++A PT R+G VD +VG A++ + ++ +
Sbjct: 88 -LSDFSASWEIKATPTFFFLRDGQQVDKLVG-ANKPELHKKITAILDS 133
>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome
research, oxidoreductase; NMR {Oryza sativa}
Length = 130
Score = 78.2 bits (193), Expect = 1e-19
Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
Query: 53 FKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINV-ENGGGEIAREFE 111
+ V+ F CG C+ + P + ++ G F+K++V E E+A ++
Sbjct: 29 MTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVDVDEL--KEVAEKYN 86
Query: 112 VQAVPTVIGFRNGDPVDTVVGNADQDVIQTLVSK 145
V+A+PT + ++G D VVG A +D +Q + K
Sbjct: 87 VEAMPTFLFIKDGAEADKVVG-ARKDDLQNTIVK 119
>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}
Length = 118
Score = 74.8 bits (184), Expect = 2e-18
Identities = 25/116 (21%), Positives = 47/116 (40%), Gaps = 8/116 (6%)
Query: 39 AVQMAYLIIEKIDDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKIN 98
+ + + + VL FF CG C++L + +++E V F+K++
Sbjct: 2 SDPIVHFNGTHEALLNRIKEAPGLVLVDFFATWCGPCQRLGQILPSIAEANKDVTFIKVD 61
Query: 99 V-ENGGGEIAREFEVQAVPTVIGFRNG----DPVDTVVGNADQDVIQTLVSKLSQK 149
V +N G A + V ++P + + +D VG AD I+ + K
Sbjct: 62 VDKN--GNAADAYGVSSIPALFFVKKEGNEIKTLDQFVG-ADVSRIKADIEKFKHH 114
>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron
transport; 2.20A {Drosophila melanogaster} SCOP:
c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A
Length = 106
Score = 74.6 bits (184), Expect = 2e-18
Identities = 28/108 (25%), Positives = 52/108 (48%), Gaps = 8/108 (7%)
Query: 42 MAYLIIEKIDDFKQTIR--GRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKIN 98
M Y + +K D + V+ FF CG CK + PK+ +S + V +K++
Sbjct: 1 MVYQVKDK-ADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVD 59
Query: 99 V-ENGGGEIAREFEVQAVPTVIGFRNGDPVDTVVGNADQDVIQTLVSK 145
V E +IA E+ + ++PT + +NG V+ G A+ ++ ++
Sbjct: 60 VDECE--DIAMEYNISSMPTFVFLKNGVKVEEFAG-ANAKRLEDVIKA 104
>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase,
structural genomics consortium, SGC; 2.00A {Plasmodium
falciparum}
Length = 133
Score = 73.6 bits (181), Expect = 6e-18
Identities = 20/107 (18%), Positives = 40/107 (37%), Gaps = 9/107 (8%)
Query: 47 IEKIDDFKQTIR--GRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGG 104
++ Q + ++ F C C +++ V V I+V+
Sbjct: 25 LKNTGSLNQVFSSTQNSSIVIKFGAVWCKPCNKIKEYFKNQLNYYY-VTLVDIDVDIHP- 82
Query: 105 EIAREFEVQAVPTVIGFRNG----DPVDTVVGNADQDVIQTLVSKLS 147
++ + ++A+PT + N V TV G A+Q+ I+ K
Sbjct: 83 KLNDQHNIKALPTFEFYFNLNNEWVLVHTVEG-ANQNDIEKAFQKYC 128
>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas
reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A
Length = 112
Score = 73.1 bits (180), Expect = 7e-18
Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 5/99 (5%)
Query: 52 DFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINV-ENGGGEIARE 109
+ P++ F CG CK + P T+S +G V F+K++V +A
Sbjct: 16 QLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVA--AVAEA 73
Query: 110 FEVQAVPTVIGFRNGDPVDTVVGNADQDVIQTLVSKLSQ 148
+ A+PT +++G D +VG A QD ++ LV+K +
Sbjct: 74 AGITAMPTFHVYKDGVKADDLVG-ASQDKLKALVAKHAA 111
>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 2.25A {Aeropyrum pernix}
Length = 135
Score = 72.9 bits (179), Expect = 2e-17
Identities = 14/105 (13%), Positives = 38/105 (36%), Gaps = 13/105 (12%)
Query: 51 DDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG--------VEFVKINV-EN 101
++F+Q ++ + + +C C + P++ S+ + +
Sbjct: 24 EEFRQLLQ--GDAILAVYSKTCPHCHRDWPQLIQASKEVDVPIVMFIWGSLIGERELSAA 81
Query: 102 GGGEIAREFEVQAVPTVIGFRNGDPVDTVVGNADQDVIQTLVSKL 146
+ V+ PT++ ++ G VD +VG + ++
Sbjct: 82 R--LEMNKAGVEGTPTLVFYKEGRIVDKLVGATPWSLKVEKAREI 124
>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB:
3hhv_A
Length = 104
Score = 71.6 bits (176), Expect = 2e-17
Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 3/97 (3%)
Query: 51 DDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINV-ENGGGEIARE 109
+F + + F+ C C L P I ++E V F K+N EN +IA
Sbjct: 7 KNFDSFLASHEIAVVDFWAEWCAPCLILAPIIEELAEDYPQVGFGKLNSDENP--DIAAR 64
Query: 110 FEVQAVPTVIGFRNGDPVDTVVGNADQDVIQTLVSKL 146
+ V ++PTVI F++G+PVD ++G ++ I+ + L
Sbjct: 65 YGVMSLPTVIFFKDGEPVDEIIGAVPREEIEIRIKNL 101
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat,
lysine dimethylation, protein binding; HET: MLY; 1.80A
{Escherichia coli} PDB: 3qdn_A*
Length = 287
Score = 74.1 bits (182), Expect = 8e-17
Identities = 28/102 (27%), Positives = 51/102 (50%), Gaps = 4/102 (3%)
Query: 51 DDFKQTIRG--RNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENGGGEIA 107
+ +Q + PVL YF+ C QL P + +++ +G K++ + IA
Sbjct: 15 SNLQQVLEQSMTTPVLFYFWSERSQHCLQLTPILESLAAQYNGQFILAKLDCDAEQ-MIA 73
Query: 108 REFEVQAVPTVIGFRNGDPVDTVVGNADQDVIQTLVSKLSQK 149
+F ++A+PTV F+NG PVD G ++ I+ L+ + +
Sbjct: 74 AQFGLRAIPTVYLFQNGQPVDGFQGPQPEEAIRALLDXVLPR 115
>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase;
1.90A {Sulfolobus solfataricus}
Length = 109
Score = 70.1 bits (172), Expect = 1e-16
Identities = 33/109 (30%), Positives = 55/109 (50%), Gaps = 5/109 (4%)
Query: 41 QMAYLIIEKIDD-FKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKIN 98
+ + + ++ F + IR VL + C C EP V+E G F ++N
Sbjct: 1 KKEDVTLVLTEENFDEVIRNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKGKAVFGRLN 60
Query: 99 V-ENGGGEIAREFEVQAVPTVIGFRNGDPVDTVVGNADQDVIQTLVSKL 146
V EN +IA ++ V +PT + F NG VD++VG D+D +++ V+K
Sbjct: 61 VDENQ--KIADKYSVLNIPTTLIFVNGQLVDSLVGAVDEDTLESTVNKY 107
>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural
genomics/proteomics initiative, RSGI; 1.82A {Thermus
thermophilus}
Length = 140
Score = 70.1 bits (172), Expect = 2e-16
Identities = 31/98 (31%), Positives = 53/98 (54%), Gaps = 4/98 (4%)
Query: 51 DDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINV-ENGGGEIAR 108
F Q + G L FF P CG C+ + P + ++ +G ++ VK+NV E+ +A
Sbjct: 41 KGFAQEVAGAPLTLVDFFAPWCGPCRLVSPILEELARDHAGRLKVVKVNVDEHP--GLAA 98
Query: 109 EFEVQAVPTVIGFRNGDPVDTVVGNADQDVIQTLVSKL 146
+ V++VPT++ FR G PV T VG + + V++ +
Sbjct: 99 RYGVRSVPTLVLFRRGAPVATWVGASPRRVLEERLRPY 136
>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium
falciparum}
Length = 128
Score = 69.3 bits (170), Expect = 3e-16
Identities = 20/128 (15%), Positives = 50/128 (39%), Gaps = 6/128 (4%)
Query: 22 SARAALPPRAHLPNLIQAVQMAYLIIEKIDD-FKQTIRGRN-PVLAYFFKPSCGFCKQLE 79
+ L P + +++ + +N ++ YFF C C
Sbjct: 2 TNDDPLTPLNRFDKYYLRMFKKVPRLQQNGSNIINGVNMKNTVIVLYFFAKWCQACTMQS 61
Query: 80 PKISTVSETTSG-VEFVKINV-ENGGGEIAREFEVQAVPTVIGFRNGDPVDTVVGNADQD 137
++ + + + +K+++ +N +AR+F V+++PT+I +N + +
Sbjct: 62 TEMDKLQKYYGKRIYLLKVDLDKNE--SLARKFSVKSLPTIILLKNKTMLARKDHFVSSN 119
Query: 138 VIQTLVSK 145
+ L+ K
Sbjct: 120 DLIALIKK 127
>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion,
electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB:
1uvz_A 1w89_A
Length = 119
Score = 68.5 bits (168), Expect = 6e-16
Identities = 35/108 (32%), Positives = 56/108 (51%), Gaps = 5/108 (4%)
Query: 42 MAYLIIEKIDDFKQT-IRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINV 99
I+ DF+ + PV+ F CG CK L P++ + G V K+++
Sbjct: 12 STTFNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDI 71
Query: 100 -ENGGGEIAREFEVQAVPTVIGFRNGDPVDTVVGNADQDVIQTLVSKL 146
++ ++A E+EV AVPTV+ +NGD VD VG D+D ++ + KL
Sbjct: 72 DDHT--DLAIEYEVSAVPTVLAMKNGDVVDKFVGIKDEDQLEAFLKKL 117
>2l57_A Uncharacterized protein; structural genomics, unknown function,
thioredoxin-like, PSI protein structure initiative; NMR
{Clostridium perfringens}
Length = 126
Score = 67.9 bits (166), Expect = 9e-16
Identities = 19/116 (16%), Positives = 51/116 (43%), Gaps = 3/116 (2%)
Query: 37 IQAVQMAYLIIEKIDDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFV 95
++ ++ + + + + P + F +C +C +++ ++S VS+ G
Sbjct: 3 LEGIKQINFQSINVVENLEEAKEGIPTIIMFKTDTCPYCVEMQKELSYVSKEREGKFNIY 62
Query: 96 KINV-ENGGGEIAREFEVQAVPTVIGF-RNGDPVDTVVGNADQDVIQTLVSKLSQK 149
+ E ++A +++ VPT + + G+ G ++ I+T+++ L K
Sbjct: 63 YARLEEEKNIDLAYKYDANIVPTTVFLDKEGNKFYVHQGLMRKNNIETILNSLGVK 118
>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich,
unknown function; 2.70A {Homo sapiens}
Length = 118
Score = 67.5 bits (165), Expect = 1e-15
Identities = 13/89 (14%), Positives = 33/89 (37%), Gaps = 7/89 (7%)
Query: 51 DDFKQTI---RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIA 107
+ + + V+ + ++ S C + +S ++ +FVK V
Sbjct: 11 NQYVNEVTNAEEDVWVIIHLYRSSIPMCLLVNQHLSLLARKFPETKFVKAIVN----SCI 66
Query: 108 REFEVQAVPTVIGFRNGDPVDTVVGNADQ 136
+ + +PT+ ++NG +G +
Sbjct: 67 QHYHDNCLPTIFVYKNGQIEAKFIGIIEC 95
>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi;
structural genomics, PSI, protein structure initiative;
2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB:
2gzp_A 2jzt_A
Length = 142
Score = 67.5 bits (165), Expect = 2e-15
Identities = 15/99 (15%), Positives = 33/99 (33%), Gaps = 4/99 (4%)
Query: 50 IDDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEF--VKINVENGGGEIA 107
+DD+ + + G +L I+ + ++ ++E I
Sbjct: 27 VDDWIKRV-GDGVILLSSDPRRTPEVSDNPVMIAELLREFPQFDWQVAVADLEQSE-AIG 84
Query: 108 REFEVQAVPTVIGFRNGDPVDTVVGNADQDVIQTLVSKL 146
F V+ P + F +G + G + TL+ +
Sbjct: 85 DRFNVRRFPATLVFTDGKLRGALSGIHPWAELLTLMRSI 123
>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A
{Escherichia coli}
Length = 128
Score = 67.0 bits (164), Expect = 3e-15
Identities = 26/109 (23%), Positives = 50/109 (45%), Gaps = 6/109 (5%)
Query: 28 PPRAHLPNLIQAVQMAYLIIEKIDD-FKQT-IRGRNPVLAYFFKPSCGFCKQLEPKISTV 85
H L+ + II DD F ++ +L F+ CG K + P + +
Sbjct: 6 HHHHHSSGLVPRGSHSDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPAKMIAPILDEI 65
Query: 86 SETTSG-VEFVKINV-ENGGGEIAREFEVQAVPTVIGFRNGDPVDTVVG 132
++ G + K+N+ +N A ++ ++ +PT++ F+NG+ T VG
Sbjct: 66 ADEYQGKLTVAKLNIDQNP--GTAPKYGIRGIPTLLLFKNGEVAATKVG 112
>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural
genomics, center for structural genomics of infec
diseases, csgid; 2.19A {Yersinia pestis}
Length = 148
Score = 67.1 bits (164), Expect = 4e-15
Identities = 22/97 (22%), Positives = 48/97 (49%), Gaps = 2/97 (2%)
Query: 51 DDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENGGGEIARE 109
+ + ++ P++ F+ P CG C+ P + + +G V FVK+N E ++
Sbjct: 46 ETLDKLLQDDLPMVIDFWAPWCGPCRSFAPIFAETAAERAGKVRFVKVNTEAEP-ALSTR 104
Query: 110 FEVQAVPTVIGFRNGDPVDTVVGNADQDVIQTLVSKL 146
F ++++PT++ +RNG +D + G + + +
Sbjct: 105 FRIRSIPTIMLYRNGKMIDMLNGAVPKAPFDNWLDEQ 141
>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein
structure initiative, midwest CENT structural genomics;
1.99A {Desulfitobacterium hafniense dcb-2}
Length = 111
Score = 66.2 bits (162), Expect = 4e-15
Identities = 22/110 (20%), Positives = 53/110 (48%), Gaps = 10/110 (9%)
Query: 42 MAYLIIEKIDD--FKQTIRGRN-PVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKI 97
M+ +EK+D F+Q I L F + +C C+++ P + + F +
Sbjct: 4 MS---LEKLDTNTFEQLIYDEGKACLVMFSRKNCHVCQKVTPVLEELRLNYEESFGFYYV 60
Query: 98 NV-ENGGGEIAREFEVQAVPTVIGFRNGDPVDTVVGNADQDVIQTLVSKL 146
+V E + + F ++ VP ++ F++G+ + G+ + D ++ +++ +
Sbjct: 61 DVEEEK--TLFQRFSLKGVPQILYFKDGEYKGKMAGDVEDDEVEQMIADV 108
>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A
{Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB:
1rqm_A 1quw_A 1nw2_A
Length = 105
Score = 65.4 bits (160), Expect = 5e-15
Identities = 29/97 (29%), Positives = 53/97 (54%), Gaps = 4/97 (4%)
Query: 51 DDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINV-ENGGGEIAR 108
+F+Q I+G PVL F+ CG C+ + P + +E + V K+NV EN E
Sbjct: 8 ANFQQAIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENP--ETTS 65
Query: 109 EFEVQAVPTVIGFRNGDPVDTVVGNADQDVIQTLVSK 145
+F + ++PT+I F+ G PV ++G ++ ++ ++
Sbjct: 66 QFGIMSIPTLILFKGGRPVKQLIGYQPKEQLEAQLAD 102
>2yzu_A Thioredoxin; redox protein, electron transport, structural
genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A
Length = 109
Score = 65.4 bits (160), Expect = 5e-15
Identities = 27/98 (27%), Positives = 50/98 (51%), Gaps = 4/98 (4%)
Query: 51 DDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINV-ENGGGEIAR 108
+F +T+ VL F+ C C+ + P + +++ G + K++V EN + A
Sbjct: 9 QNFDETLGQHPLVLVDFWAEWCAPCRMIAPILEEIAKEYEGKLLVAKLDVDENP--KTAM 66
Query: 109 EFEVQAVPTVIGFRNGDPVDTVVGNADQDVIQTLVSKL 146
+ V ++PTVI F++G PV+ +VG + Q + K
Sbjct: 67 RYRVMSIPTVILFKDGQPVEVLVGAQPKRNYQAKIEKH 104
>2dbc_A PDCL2, unnamed protein product; phosducin-like protein,
thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus
musculus}
Length = 135
Score = 66.0 bits (161), Expect = 7e-15
Identities = 13/89 (14%), Positives = 32/89 (35%), Gaps = 7/89 (7%)
Query: 51 DDFKQTI---RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIA 107
+ + + V+ + ++ S C + +S ++ +FVK V
Sbjct: 18 NQYVNEVTNAEKDLWVVIHLYRSSVPMCLVVNQHLSVLARKFPETKFVKAIVN----SCI 73
Query: 108 REFEVQAVPTVIGFRNGDPVDTVVGNADQ 136
+ +PT+ ++NG +G +
Sbjct: 74 EHYHDNCLPTIFVYKNGQIEGKFIGIIEC 102
>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction,
regulation, phosphorylation, G proteins, thioredoxin,
vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB:
1b9y_C 1b9x_C
Length = 245
Score = 67.4 bits (164), Expect = 1e-14
Identities = 17/93 (18%), Positives = 38/93 (40%), Gaps = 5/93 (5%)
Query: 47 IEKIDDFKQTIRGRNP---VLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGG 103
+E + F +TI ++ + ++ C L + ++ V+F KI N G
Sbjct: 117 LESGEQFLETIEKEQKITTIVVHIYEDGIKGCDALNSSLICLAAEYPMVKFCKIKASNTG 176
Query: 104 GEIAREFEVQAVPTVIGFRNGDPVDTVVGNADQ 136
F +PT++ ++ G+ + + +Q
Sbjct: 177 --AGDRFSSDVLPTLLVYKGGELLSNFISVTEQ 207
>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport;
1.60A {Nostoc SP} SCOP: c.47.1.1
Length = 115
Score = 64.2 bits (157), Expect = 2e-14
Identities = 25/108 (23%), Positives = 52/108 (48%), Gaps = 6/108 (5%)
Query: 42 MAYLIIEKIDD-FKQT-IRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKIN 98
M+ +I D F+ ++ PVL YF+ CG C+ + P I+ + T S ++ VK+
Sbjct: 5 MSKGVITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLE 64
Query: 99 V-ENGGGEIAREFEVQAVPTVIGFRNGDPVDTVVGNADQDVIQTLVSK 145
+ N ++++V+ VP + + +D+ G +D + + +
Sbjct: 65 IDPNP--TTVKKYKVEGVPALRLVKGEQILDSTEGVISKDKLLSFLDT 110
>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure
initiative, structural genomics; 2.30A {Methanosarcina
mazei}
Length = 140
Score = 65.1 bits (159), Expect = 2e-14
Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 7/110 (6%)
Query: 42 MAYLIIEKIDD--FKQTIRGRN-PVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKI 97
+ I + +D + Q + PV+ F+ P+C +CK +EP ++ F +I
Sbjct: 3 LNGSSIIEFEDMTWSQQVEDSKKPVVVMFYSPACPYCKAMEPYFEEYAKEYGSSAVFGRI 62
Query: 98 NV-ENGGGEIAREFEVQAVPTVIGFRNGDPVDTVVGNADQDVIQTLVSKL 146
N+ N A ++ VQ PT F +G PV VG +++ V +
Sbjct: 63 NIATNP--WTAEKYGVQGTPTFKFFCHGRPVWEQVGQIYPSILKNAVRDM 110
>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A
{Rhodobacter capsulatus}
Length = 155
Score = 65.2 bits (159), Expect = 2e-14
Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 3/84 (3%)
Query: 51 DDFKQ-TIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENGGGEIAR 108
R P+L F+ P CG C+Q+ P+ + T +G V KI+ + +A
Sbjct: 54 PAILARAERDDLPLLVDFWAPWCGPCRQMAPQFQAAAATLAGQVRLAKIDTQAHP-AVAG 112
Query: 109 EFEVQAVPTVIGFRNGDPVDTVVG 132
+Q +P I F G + G
Sbjct: 113 RHRIQGIPAFILFHKGRELARAAG 136
>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox
enzymology, oxidoreductase, redox-active center,
transport; 1.85A {Staphylococcus aureus} PDB: 2o7k_A
2o85_A 2o89_A 2o87_A
Length = 106
Score = 63.5 bits (155), Expect = 3e-14
Identities = 29/97 (29%), Positives = 52/97 (53%), Gaps = 5/97 (5%)
Query: 51 DDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINV-ENGGGEIAR 108
DF + L F+ +CG CK + P + ++ G + +K++V EN A
Sbjct: 11 ADFDSKVE-SGVQLVDFWATACGPCKMIAPVLEELAADYEGKADILKLDVDENP--STAA 67
Query: 109 EFEVQAVPTVIGFRNGDPVDTVVGNADQDVIQTLVSK 145
++EV ++PT+I F++G PVD VVG ++ + ++ K
Sbjct: 68 KYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDK 104
>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule,
electron transport; 1.51A {Streptomyces coelicolor}
Length = 112
Score = 63.5 bits (155), Expect = 3e-14
Identities = 29/96 (30%), Positives = 51/96 (53%), Gaps = 6/96 (6%)
Query: 41 QMAYLIIEKIDD-FKQT-IRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKI 97
MA + DD F+Q ++ PVL F+ CG C+Q+ P + ++ +E VK+
Sbjct: 2 HMAGTLKHVTDDSFEQDVLKNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDKIEIVKL 61
Query: 98 NV-ENGGGEIAREFEVQAVPTVIGFRNGDPVDTVVG 132
N+ EN A ++ V ++PT+ ++ G+ T+VG
Sbjct: 62 NIDENP--GTAAKYGVMSIPTLNVYQGGEVAKTIVG 95
>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A
{Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB:
1j08_A
Length = 226
Score = 65.1 bits (158), Expect = 8e-14
Identities = 23/131 (17%), Positives = 43/131 (32%), Gaps = 8/131 (6%)
Query: 25 AALPPRAHLPNLIQAVQMAYLIIEKIDD--FKQTIRGRNPV-LAYFFKPSCGFCKQLEPK 81
LP ++ + + D + V + F P+C +C
Sbjct: 96 FGLPAGHEFAAFLEDIVDVSREETNLMDETKQAIRNIDQDVRILVFVTPTCPYCPLAVRM 155
Query: 82 ISTVSETTSGVEFVKINVENGGG----EIAREFEVQAVPTVIGFRNGDPVDTVVGNAD-Q 136
+ + KI + E A ++ V AVP ++ NG+ G +
Sbjct: 156 AHKFAIENTKAGKGKILGDMVEAIEYPEWADQYNVMAVPKIVIQVNGEDRVEFEGAYPEK 215
Query: 137 DVIQTLVSKLS 147
++ L+S LS
Sbjct: 216 MFLEKLLSALS 226
>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport,
redox-active center; 1.50A {Bacillus subtilis} PDB:
2ipa_A 2gzy_A 2gzz_A
Length = 112
Score = 61.9 bits (151), Expect = 1e-13
Identities = 34/107 (31%), Positives = 58/107 (54%), Gaps = 8/107 (7%)
Query: 42 MAYLIIEKIDD-FKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINV 99
MA I++ D F VLA F+ P CG K + P + + + ++ VKI+V
Sbjct: 1 MA--IVKATDQSFSAETSEG-VVLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKIDV 57
Query: 100 -ENGGGEIAREFEVQAVPTVIGFRNGDPVDTVVGNADQDVIQTLVSK 145
EN E A ++ V ++PT++ ++G+ V+T VG ++ +Q LV+K
Sbjct: 58 DENQ--ETAGKYGVMSIPTLLVLKDGEVVETSVGFKPKEALQELVNK 102
>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP:
c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C
Length = 105
Score = 60.7 bits (148), Expect = 3e-13
Identities = 25/86 (29%), Positives = 49/86 (56%), Gaps = 4/86 (4%)
Query: 62 PVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINV-ENGGGEIAREFEVQAVPTVI 119
PV+ F+ P CG CK + P I +++ SG + K+N E IA ++ ++++PTV+
Sbjct: 20 PVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAP--GIATQYNIRSIPTVL 77
Query: 120 GFRNGDPVDTVVGNADQDVIQTLVSK 145
F+NG+ ++++G + + + K
Sbjct: 78 FFKNGERKESIIGAVPKSTLTDSIEK 103
>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}
Length = 106
Score = 60.8 bits (148), Expect = 3e-13
Identities = 31/98 (31%), Positives = 59/98 (60%), Gaps = 5/98 (5%)
Query: 51 DDFKQ-TIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINV-ENGGGEIA 107
++F+Q ++ PVL F+ P CG C+ + P I +++ G V+ VK+NV EN A
Sbjct: 9 ENFEQEVLKSDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEGKVKVVKVNVDENP--NTA 66
Query: 108 REFEVQAVPTVIGFRNGDPVDTVVGNADQDVIQTLVSK 145
++ ++++PT++ F+NG VD +VG ++ ++ + K
Sbjct: 67 AQYGIRSIPTLLLFKNGQVVDRLVGAQPKEALKERIDK 104
>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2,
protein structure initiative; NMR {Bacteroides
thetaiotaomicron}
Length = 130
Score = 61.3 bits (149), Expect = 4e-13
Identities = 23/102 (22%), Positives = 45/102 (44%), Gaps = 6/102 (5%)
Query: 51 DDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKIST---VSETTSG-VEFVKINVENG-GGE 105
+ K+ + F CG CK+L + V++ + +K+++E G G E
Sbjct: 18 EALKRAEVEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNRHFVNLKMDMEKGEGVE 77
Query: 106 IAREFEVQAVPTVIGFR-NGDPVDTVVGNADQDVIQTLVSKL 146
+ +++ V A PT++ +G+ V +VG D + V
Sbjct: 78 LRKKYGVHAYPTLLFINSSGEVVYRLVGAEDAPELLKKVKLG 119
>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell
cycle, mRNA processing, mRNA splicing, nucleus,
phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens}
PDB: 1xbs_A
Length = 149
Score = 61.5 bits (149), Expect = 4e-13
Identities = 17/97 (17%), Positives = 35/97 (36%), Gaps = 6/97 (6%)
Query: 51 DDFKQTIR--GRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINV-ENGGGEI 106
+ Q I+ ++ F + C QL+ +S S S ++V +
Sbjct: 12 KEVDQAIKSTAEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKMAAIYLVDVDQTA--VY 69
Query: 107 AREFEVQAVPTVIGFRNGDPVDTVVGNADQDVIQTLV 143
+ F++ +P+ + F NG + G+ D
Sbjct: 70 TQYFDISYIPSTVFFFNGQHMKVDYGSPDHTKFVGSF 106
>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A
{Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A
2l59_A
Length = 121
Score = 60.8 bits (148), Expect = 4e-13
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 5/85 (5%)
Query: 51 DDFKQT-IRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINV-ENGGGEIA 107
F + PVL F+ CG CK + P + ++ + + K++V N E A
Sbjct: 20 ASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNP--ETA 77
Query: 108 REFEVQAVPTVIGFRNGDPVDTVVG 132
R F+V ++PT+I F++G PV +VG
Sbjct: 78 RNFQVVSIPTLILFKDGQPVKRIVG 102
>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic
thioredoxin, oxidoreductase; NMR {Chlamydomonas
reinhardtii} SCOP: c.47.1.1
Length = 107
Score = 60.4 bits (147), Expect = 5e-13
Identities = 21/73 (28%), Positives = 43/73 (58%), Gaps = 4/73 (5%)
Query: 62 PVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINV-ENGGGEIAREFEVQAVPTVI 119
PVL F+ P CG C+ + P + ++ ++ VK+N E+ +A E+ ++++PT++
Sbjct: 21 PVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESP--NVASEYGIRSIPTIM 78
Query: 120 GFRNGDPVDTVVG 132
F+ G +T++G
Sbjct: 79 VFKGGKKCETIIG 91
>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A
{Acetobacter aceti}
Length = 107
Score = 60.4 bits (147), Expect = 5e-13
Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 5/85 (5%)
Query: 51 DDFKQT-IRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINV-ENGGGEIA 107
F Q ++ VL F+ CG CK + P + + + +G V K+N+ +N E
Sbjct: 10 SSFDQDVLKASGLVLVDFWAEWCGPCKMIGPALGEIGKEFAGKVTVAKVNIDDNP--ETP 67
Query: 108 REFEVQAVPTVIGFRNGDPVDTVVG 132
++V+++PT++ R+G +D VG
Sbjct: 68 NAYQVRSIPTLMLVRDGKVIDKKVG 92
>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction,
regulation, phosphorylation, G proteins, thioredoxin,
vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6
Length = 217
Score = 62.0 bits (150), Expect = 1e-12
Identities = 18/93 (19%), Positives = 38/93 (40%), Gaps = 5/93 (5%)
Query: 47 IEKIDDFKQTIRGRNP---VLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGG 103
+E + F +TI ++ ++ C L + ++ V+F KI N G
Sbjct: 104 LETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEYPMVKFCKIRASNTG 163
Query: 104 GEIAREFEVQAVPTVIGFRNGDPVDTVVGNADQ 136
F +PT++ ++ G+ + + A+Q
Sbjct: 164 --AGDRFSSDVLPTLLVYKGGELISNFISVAEQ 194
>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 140
Score = 60.5 bits (147), Expect = 1e-12
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
Query: 51 DDFKQTIRGRNPVLAYFFKPSCGFCKQLEPK----ISTVSETTSGVEFVKINVENGGGEI 106
+F + ++ VL F+ P CG CKQ P+ ST+ + + KI+ + +
Sbjct: 25 GNFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATS-ASML 83
Query: 107 AREFEVQAVPTVIGFRNGDPVD 128
A +F+V PT+ + G VD
Sbjct: 84 ASKFDVSGYPTIKILKKGQAVD 105
>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide
bond, endoplasmic reticulum isomerase, redox-active
center; 1.95A {Homo sapiens} PDB: 2dj2_A
Length = 241
Score = 62.2 bits (151), Expect = 1e-12
Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 5/82 (6%)
Query: 51 DDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSET----TSGVEFVKINVENGGGEI 106
+F + ++ VL F+ P CG CKQ P+ ++ + KI+ + +
Sbjct: 23 ANFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDATS-ASVL 81
Query: 107 AREFEVQAVPTVIGFRNGDPVD 128
A F+V PT+ + G VD
Sbjct: 82 ASRFDVSGYPTIKILKKGQAVD 103
Score = 58.3 bits (141), Expect = 2e-11
Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 51 DDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG----VEFVKINVENGGGEI 106
++F + + + +L F+ P CG CK+L P+ ++ S + K++ ++
Sbjct: 138 ENFDEVVNDADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATA-ETDL 196
Query: 107 AREFEVQAVPTVIGFRNGDPVD 128
A+ F+V PT+ FR G P D
Sbjct: 197 AKRFDVSGYPTLKIFRKGRPYD 218
>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP:
c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B*
1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B*
1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T*
2h6x_A ...
Length = 108
Score = 59.2 bits (144), Expect = 1e-12
Identities = 22/85 (25%), Positives = 44/85 (51%), Gaps = 5/85 (5%)
Query: 51 DDFKQT-IRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINV-ENGGGEIA 107
D F ++ +L F+ CG CK + P + +++ G + K+N+ +N A
Sbjct: 10 DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP--GTA 67
Query: 108 REFEVQAVPTVIGFRNGDPVDTVVG 132
++ ++ +PT++ F+NG+ T VG
Sbjct: 68 PKYGIRGIPTLLLFKNGEVAATKVG 92
>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2,
protein STRU initiative; NMR {Bacteroides vulgatus}
Length = 136
Score = 59.8 bits (145), Expect = 2e-12
Identities = 15/92 (16%), Positives = 39/92 (42%), Gaps = 4/92 (4%)
Query: 57 IRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINV-ENGGGEIAREFEVQA 114
G P + F+ CG CK + P + +++ G + K++ + E+A F +++
Sbjct: 35 YEGDKPAIVDFYADWCGPCKMVAPILDELAKEYDGQIVIYKVDTEKEQ--ELAGAFGIRS 92
Query: 115 VPTVIGFRNGDPVDTVVGNADQDVIQTLVSKL 146
+P+++ + G + + + +
Sbjct: 93 IPSILFIPMEGKPEMAQGAMPKASFKKAIDEF 124
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, alternative
splicing, FBP interacting repressor, RRM, electron
transport; 2.20A {Escherichia coli O157}
Length = 222
Score = 61.4 bits (149), Expect = 2e-12
Identities = 26/108 (24%), Positives = 53/108 (49%), Gaps = 6/108 (5%)
Query: 42 MAYLIIEKIDD-FKQT-IRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKIN 98
M+ II DD F ++ +L F+ CG CK + P + +++ G + K+N
Sbjct: 10 MSDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLN 69
Query: 99 V-ENGGGEIAREFEVQAVPTVIGFRNGDPVDTVVGNADQDVIQTLVSK 145
+ +N A ++ ++ +PT++ F+NG+ T VG + ++ +
Sbjct: 70 IDQNP--GTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDA 115
>1mek_A Protein disulfide isomerase; electron transport, redox-active
center, endoplasmic reticulum; NMR {Homo sapiens} SCOP:
c.47.1.2
Length = 120
Score = 59.2 bits (144), Expect = 2e-12
Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Query: 51 DDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKI----STVSETTSGVEFVKINVENGGGEI 106
+F + + +L F+ P CG CK L P+ + S + K++ ++
Sbjct: 15 SNFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATE-ESDL 73
Query: 107 AREFEVQAVPTVIGFRNGDPVD 128
A+++ V+ PT+ FRNGD
Sbjct: 74 AQQYGVRGYPTIKFFRNGDTAS 95
>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif,
endoplasmic reticulum, oxidore; 1.90A {Mus musculus}
Length = 122
Score = 58.5 bits (142), Expect = 4e-12
Identities = 17/102 (16%), Positives = 41/102 (40%), Gaps = 9/102 (8%)
Query: 51 DDFKQTI-RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINV-ENGGGEIA 107
F + + +G+ + F+ P CG C+ P+ ++ G V K++ +
Sbjct: 11 QTFNEKVLQGKTHWVVDFYAPWCGPCQNFAPEFELLARMIKGKVRAGKVDCQAYP--QTC 68
Query: 108 REFEVQAVPTVIGFRNGDPVDTVV----GNADQDVIQTLVSK 145
++ ++A P+V ++ ++ + D I L+
Sbjct: 69 QKAGIKAYPSVKLYQYERAKKSIWEEQINSRDAKTIAALIYG 110
>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis}
PDB: 3hyp_A
Length = 141
Score = 58.7 bits (142), Expect = 5e-12
Identities = 23/101 (22%), Positives = 47/101 (46%), Gaps = 4/101 (3%)
Query: 51 DDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINV-ENGGGEIAR 108
+ G P + F+ CG CK + P + +S+ +G + K+NV + E+AR
Sbjct: 42 HSKEWKYLGDKPAIVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVDKEP--ELAR 99
Query: 109 EFEVQAVPTVIGFRNGDPVDTVVGNADQDVIQTLVSKLSQK 149
+F +Q++PT+ +G ++ ++ + K+ K
Sbjct: 100 DFGIQSIPTIWFVPMKGEPQVNMGALSKEQLKGYIDKVLLK 140
>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP:
c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A
Length = 504
Score = 61.0 bits (147), Expect = 6e-12
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 51 DDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG--VEFVKINVENGGGEIAR 108
D F + I+ + VLA FF P CG CK + P+ +ET + +I+ ++
Sbjct: 22 DSFNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTE-NQDLCM 80
Query: 109 EFEVQAVPTVIGFRNGDP 126
E + P++ F+N D
Sbjct: 81 EHNIPGFPSLKIFKNSDV 98
Score = 47.2 bits (111), Expect = 4e-07
Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 8/85 (9%)
Query: 51 DDFKQTIRGRN-PVLAYFFKPSCGFCKQLEPKISTVSET----TSGVEFVKINVENGGGE 105
+ + + VL ++ P CG CK+L P +++T TS V K++
Sbjct: 366 KNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTE---N 422
Query: 106 IAREFEVQAVPTVIGFRNGDPVDTV 130
R ++ PT++ + G ++V
Sbjct: 423 DVRGVVIEGYPTIVLYPGGKKSESV 447
>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich,
structural genomics, PSI, protein structure initiative;
HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP:
c.47.1.1
Length = 118
Score = 56.5 bits (136), Expect = 2e-11
Identities = 13/106 (12%), Positives = 32/106 (30%), Gaps = 6/106 (5%)
Query: 43 AYLIIEKIDDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENG 102
L + + ++ + + + + +C +C++ +S V T IN E
Sbjct: 12 KDLEVTTVVRAQEALDKKETATFFIGRKTCPYCRKFAGTLSGVVAET-KAHIYFINSEEP 70
Query: 103 GG-----EIAREFEVQAVPTVIGFRNGDPVDTVVGNADQDVIQTLV 143
+ + VP + +G + I+
Sbjct: 71 SQLNDLQAFRSRYGIPTVPGFVHITDGQINVRCDSSMSAQEIKDFA 116
>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone,
endoplasmic reticulum, S response; 2.60A {Homo sapiens}
Length = 382
Score = 59.2 bits (143), Expect = 2e-11
Identities = 17/84 (20%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 51 DDFKQTIRGRNPVLAYFFKPSCGFCKQLEP-------KISTVSETTSGVEFVKINVENGG 103
++ + + + L F+ C F + L P I + V F +++ +
Sbjct: 13 ENIDEILNNADVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFARVDCDQ-H 71
Query: 104 GEIAREFEVQAVPTVIGFRNGDPV 127
+IA+ + + PT+ FRNG +
Sbjct: 72 SDIAQRYRISKYPTLKLFRNGMMM 95
>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31
protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 137
Score = 56.4 bits (136), Expect = 4e-11
Identities = 18/104 (17%), Positives = 39/104 (37%), Gaps = 15/104 (14%)
Query: 42 MAYLIIEKIDD--FKQTIRG--RNPVLAYFFKPSCGFCKQLEPKISTVSE--TTSGVEFV 95
+ I+ +D + + R + FF C+ P + +S +G+ F
Sbjct: 4 GSSGYIKYFNDKTIDEELERDKRVTWIVEFFANWSNDCQSFAPIYADLSLKYNCTGLNFG 63
Query: 96 KINV-ENGGGEIAREFEVQA------VPTVIGFRNGDPVDTVVG 132
K++V +++ ++V +PT+I F+ G
Sbjct: 64 KVDVGRYT--DVSTRYKVSTSPLTKQLPTLILFQGGKEAMRRPQ 105
>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC
structure funded by NIH, protein structure initiative,
PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1
Length = 85
Score = 54.2 bits (131), Expect = 6e-11
Identities = 20/86 (23%), Positives = 35/86 (40%), Gaps = 8/86 (9%)
Query: 62 PVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINV-ENGGGEIAREFEVQAVPTVI 119
+ F P C C + + V+ VE INV EN + A E+ + AVPT++
Sbjct: 4 VKIELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVMENP--QKAMEYGIMAVPTIV 61
Query: 120 GFRNGDPVDTVVGNADQDVIQTLVSK 145
+ +G ++ + + K
Sbjct: 62 INGDV----EFIGAPTKEALVEAIKK 83
>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 126
Score = 55.4 bits (134), Expect = 7e-11
Identities = 16/80 (20%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
Query: 51 DDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG--VEFVKINVENGGGEIAR 108
+++++ + G + F+ P C C+ L+P+ + +E V K++V ++
Sbjct: 15 ENWRELLEG--DWMIEFYAPWCPACQNLQPEWESFAEWGEDLEVNIAKVDVTEQP-GLSG 71
Query: 109 EFEVQAVPTVIGFRNGDPVD 128
F + A+PT+ ++G+
Sbjct: 72 RFIINALPTIYHCKDGEFRR 91
>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold,
isomerase; 2.00A {Homo sapiens} PDB: 2diz_A
Length = 111
Score = 55.0 bits (133), Expect = 7e-11
Identities = 25/101 (24%), Positives = 40/101 (39%), Gaps = 6/101 (5%)
Query: 51 DDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKI----STVSETTSGVEFVKINVENGGGEI 106
++F TI F+ P CG CK L P +GV+ +++ I
Sbjct: 13 NNFDDTI-AEGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTA-ERNI 70
Query: 107 AREFEVQAVPTVIGFRNGDPVDTVVGNADQDVIQTLVSKLS 147
++ V+ PT++ FR G V G D D + V +
Sbjct: 71 CSKYSVRGYPTLLLFRGGKKVSEHSGGRDLDSLHRFVLSQA 111
>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum,
glycoprotein, immunoglobulin domain, microsome, protein
disulfide isomerase, thioredoxin-like FO like domain;
HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A
Length = 481
Score = 57.9 bits (139), Expect = 8e-11
Identities = 24/93 (25%), Positives = 37/93 (39%), Gaps = 5/93 (5%)
Query: 51 DDFKQTI---RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENGGGEI 106
D+F+ I +L FF P CG K+L P+ + G V K++
Sbjct: 9 DNFESRISDTGSAGLMLVEFFAPWCGHAKRLAPEYEAAATRLKGIVPLAKVDCTA-NTNT 67
Query: 107 AREFEVQAVPTVIGFRNGDPVDTVVGNADQDVI 139
++ V PT+ FR+G+ G D I
Sbjct: 68 CNKYGVSGYPTLKIFRDGEEAGAYDGPRTADGI 100
Score = 49.9 bits (118), Expect = 4e-08
Identities = 23/107 (21%), Positives = 41/107 (38%), Gaps = 6/107 (5%)
Query: 28 PPRAHLPNLIQAVQMAYLIIEKIDDFKQTIRGRN-PVLAYFFKPSCGFCKQLEPKISTVS 86
R I + + ++F + + N VL F+ P CG CK LEPK +
Sbjct: 337 LKRYLKSEPIPESNDGPVKVVVAENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELG 396
Query: 87 ETTSG---VEFVKINVENGGGEIAREFEVQAVPTVIGFRNGDPVDTV 130
E S + K++ ++ +EV+ PT+ ++
Sbjct: 397 EKLSKDPNIVIAKMDATA--NDVPSPYEVRGFPTIYFSPANKKLNPK 441
>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy,
IGE, conformational diversity, multispecficity,
redox-active center; 2.77A {Escherichia coli} SCOP:
c.47.1.1
Length = 123
Score = 54.0 bits (130), Expect = 2e-10
Identities = 26/109 (23%), Positives = 49/109 (44%), Gaps = 20/109 (18%)
Query: 42 MAYLIIEKIDD-FKQT-IRGRNPVLAYFFKPSCG--------------FCKQLEPKISTV 85
M+ II DD F ++ +L F+ CG CK + P + +
Sbjct: 1 MSDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEI 60
Query: 86 SETTSG-VEFVKINV-ENGGGEIAREFEVQAVPTVIGFRNGDPVDTVVG 132
++ G + K+N+ +N A ++ ++ +PT++ F+NG+ T VG
Sbjct: 61 ADEYQGKLTVAKLNIDQNP--GTAPKYGIRGIPTLLLFKNGEVAATKVG 107
>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin
like domain, redox, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 133
Score = 53.2 bits (128), Expect = 5e-10
Identities = 21/105 (20%), Positives = 40/105 (38%), Gaps = 7/105 (6%)
Query: 51 DDFKQTIRGRN-PVLAYFFKPSCGFCKQLEPKISTV-----SETTSGVEFVKINVENGGG 104
D F + + + F+ P CG CK LEP+ + +T V+ ++
Sbjct: 15 DSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATV-NQ 73
Query: 105 EIAREFEVQAVPTVIGFRNGDPVDTVVGNADQDVIQTLVSKLSQK 149
+A + ++ PT+ F+ G+ G + I + L
Sbjct: 74 VLASRYGIRGFPTIKIFQKGESPVDYDGGRTRSDIVSRALDLFSD 118
>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus
musculus} PDB: 3t59_A*
Length = 519
Score = 55.0 bits (131), Expect = 7e-10
Identities = 20/110 (18%), Positives = 33/110 (30%), Gaps = 11/110 (10%)
Query: 51 DDFKQTIRGRN-PVLAYFFKPSCGFCKQLEPKISTVSETTSG----VEFVKIN-VENGGG 104
D + T+ G + FF CG P ++ + ++ E
Sbjct: 20 DSVRPTVLGSSSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAEETNS 79
Query: 105 EIAREFEVQAVPTVIGFRNG-----DPVDTVVGNADQDVIQTLVSKLSQK 149
+ REF + PTV F+ G Q + L+ L
Sbjct: 80 AVCREFNIAGFPTVRFFQAFTKNGSGATLPGAGANVQTLRMRLIDALESH 129
>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC,
endoplasmic reticulum, glycoprotein, redox-active
center; 2.00A {Saccharomyces cerevisiae}
Length = 298
Score = 54.8 bits (131), Expect = 8e-10
Identities = 20/98 (20%), Positives = 38/98 (38%), Gaps = 3/98 (3%)
Query: 51 DDFKQTIRGRN-PVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINV-ENGGGEIA 107
F + I N L F+ P CG CK+L ++ G V+ +N N +
Sbjct: 25 KSFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGVVQVAAVNCDLNKNKALC 84
Query: 108 REFEVQAVPTVIGFRNGDPVDTVVGNADQDVIQTLVSK 145
+++V PT++ FR + + + ++
Sbjct: 85 AKYDVNGFPTLMVFRPPKIDLSKPIDNAKKSFSAHANE 122
>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus
cuniculus} PDB: 1a8y_A 3trq_A* 3trp_A* 3uom_A
Length = 367
Score = 53.9 bits (129), Expect = 2e-09
Identities = 9/86 (10%), Positives = 30/86 (34%), Gaps = 9/86 (10%)
Query: 51 DDFKQTIRGRNPVLAYFFKPSCGFCKQ------LEPKISTVSET--TSGVEFVKINVENG 102
++K + + + +P E + ++ GV F ++ E
Sbjct: 21 KNYKNVFKKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEK- 79
Query: 103 GGEIAREFEVQAVPTVIGFRNGDPVD 128
+A++ + ++ F+ + ++
Sbjct: 80 DAAVAKKLGLTEEDSIYVFKEDEVIE 105
>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform;
glycoprotein, calcium-binding, muscle protein, metal
binding protein; 2.40A {Canis lupus familiaris} PDB:
2vaf_A
Length = 350
Score = 53.5 bits (128), Expect = 2e-09
Identities = 10/87 (11%), Positives = 32/87 (36%), Gaps = 11/87 (12%)
Query: 51 DDFKQTIRGRNPVLAYFFKPSCGFCKQLEP---------KISTVSETTSGVEFVKINVEN 101
+FKQ ++ + VL ++ S K + ++ + FV ++ +
Sbjct: 19 KNFKQVLK-KYDVLCLYYHESVSSDKVAQKQFQLKEIVLELVAQVLEHKDIGFVMVDAKK 77
Query: 102 GGGEIAREFEVQAVPTVIGFRNGDPVD 128
++A++ ++ + ++
Sbjct: 78 -EAKLAKKLGFDEEGSLYVLKGDRTIE 103
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin,
endoplasmic reticulum, oxidoreducta; 2.40A {Mus
musculus}
Length = 780
Score = 52.8 bits (126), Expect = 4e-09
Identities = 14/96 (14%), Positives = 32/96 (33%), Gaps = 2/96 (2%)
Query: 51 DDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENGGGEIARE 109
+F + F+ P L P ++ G + +N + + R
Sbjct: 124 REFDAAVNSGELWFVNFYSPGSSHSHDLAPTWREFAKEVDGLLRIGAVNCGD-DRMLCRM 182
Query: 110 FEVQAVPTVIGFRNGDPVDTVVGNADQDVIQTLVSK 145
V + P++ FR+G G+ ++ + +
Sbjct: 183 KGVNSYPSLFIFRSGMAAVKYNGDRSKESLVAFAMQ 218
Score = 52.1 bits (124), Expect = 8e-09
Identities = 15/79 (18%), Positives = 30/79 (37%), Gaps = 4/79 (5%)
Query: 51 DDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENGGGEIARE 109
+F + + P L FF P + L P++ S G ++ ++ +
Sbjct: 448 QNFPAS--DKEPWLVDFFAPWSPPSRALLPELRKASTLLYGQLKVGTLDCTI-HEGLCNM 504
Query: 110 FEVQAVPTVIGFRNGDPVD 128
+ +QA PT + F +
Sbjct: 505 YNIQAYPTTVVFNQSSIHE 523
Score = 51.3 bits (122), Expect = 1e-08
Identities = 12/76 (15%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Query: 51 DDFKQTI-RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENGGGEIAR 108
F + + +G+ + F+ P G + P+ ++ G V K++ + + +
Sbjct: 665 QTFNEKVLQGKTHWVVDFYAPWSGPSQNFAPEFELLARMIKGKVRAGKVDCQA-YPQTCQ 723
Query: 109 EFEVQAVPTVIGFRNG 124
+ ++A P+V ++
Sbjct: 724 KAGIKAYPSVKLYQYE 739
Score = 49.0 bits (116), Expect = 1e-07
Identities = 9/80 (11%), Positives = 26/80 (32%), Gaps = 2/80 (2%)
Query: 48 EKIDDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENGGGEI 106
++ + + + F+ P + L P+ ++ T +G + ++
Sbjct: 551 STFNELVKQRKHDEVWMVDFYSPWSHPSQVLMPEWKRMARTLTGLINVGSVDCGQ-YHSF 609
Query: 107 AREFEVQAVPTVIGFRNGDP 126
+ VQ P + +
Sbjct: 610 CTQENVQRYPEIRFYPQKSS 629
Score = 35.5 bits (81), Expect = 0.004
Identities = 8/78 (10%), Positives = 19/78 (24%), Gaps = 5/78 (6%)
Query: 51 DDFKQTIRGRNPVLAYFFKPSCGFCKQLEP---KISTVSETTSGVEFVKINVENGGGEIA 107
+F I + C + ++ V ++ + +
Sbjct: 230 GNFVNAIETAFAAGVGWLITFCSKGEDCLTSQTRLRLSGMLDGLVNVGWVDCDA-QDSLC 288
Query: 108 REFEVQAVPTVIGFRNGD 125
+ + A T F G
Sbjct: 289 KSLDTTASTTAY-FPPGA 305
Score = 28.6 bits (63), Expect = 0.92
Identities = 8/96 (8%), Positives = 30/96 (31%), Gaps = 6/96 (6%)
Query: 45 LIIEKIDDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG--VEFVKINVENG 102
+ + + L +F +P++ + ++ V+ + +
Sbjct: 336 DFELLSANQLEDRLAHHRWLVFFHF--GKNENANDPELKKLKTLLKNEHIQVVRFDCSS- 392
Query: 103 GGEIAREFEVQAVPTVIGFRNGDPVDTVVGNADQDV 138
I + V P++ F+ + + + + +
Sbjct: 393 APGICSDLYVFQ-PSLAVFKGQGTKEYEIHHGKKIL 427
>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing
protein 7, endoplasmic reticulum, redox-active center,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 130
Score = 49.7 bits (119), Expect = 1e-08
Identities = 16/77 (20%), Positives = 32/77 (41%), Gaps = 3/77 (3%)
Query: 51 DDFKQTIRGRN-PVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENGGGEIAR 108
+F + + + L F+ P CG C++L P+ + V+ +N + +
Sbjct: 25 SNFNREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAATALKDVVKVGAVNADK-HQSLGG 83
Query: 109 EFEVQAVPTVIGFRNGD 125
++ VQ PT+ F
Sbjct: 84 QYGVQGFPTIKIFGANK 100
>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold,
sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A
{Trypanosoma brucei} PDB: 3qd9_A*
Length = 470
Score = 50.4 bits (119), Expect = 3e-08
Identities = 16/89 (17%), Positives = 32/89 (35%), Gaps = 12/89 (13%)
Query: 51 DDFKQTIRGRN--PVLAYFFKPSCGFCKQLEP---------KISTVSETTSGVEFVKINV 99
DDF + R P + F+ CG C++ K+ + +N
Sbjct: 31 DDFSRVHRVAPLCPWIVLFYNDGCGACRRYASTFSKFAGGLKVEHGKDALQIATAAAVNC 90
Query: 100 ENGGGEIAREFEVQAVPTVIGFRNGDPVD 128
+ ++ R++++ VP + F D
Sbjct: 91 AS-EVDLCRKYDINFVPRLFFFYPRDSCR 118
>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin,
thioredoxin fold, oxidoreductase, reductive methylation;
HET: MLY; 2.05A {Homo sapiens}
Length = 244
Score = 49.6 bits (118), Expect = 4e-08
Identities = 22/110 (20%), Positives = 33/110 (30%), Gaps = 11/110 (10%)
Query: 51 DDFKQTIRGRN-PVLAYFFKPSCGFCKQLEPKI----STVSETTSGVEFVKIN-VENGGG 104
D + + G FF CG C P V + ++ E
Sbjct: 20 DTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEETNS 79
Query: 105 EIAREFEVQAVPTVIGFRNG-----DPVDTVVGNADQDVIQTLVSKLSQK 149
+ R+F + PTV F V V G Q + + L+ L
Sbjct: 80 AVCRDFNIPGFPTVRFFXAFTXNGSGAVFPVAGADVQTLRERLIDALESH 129
Score = 31.9 bits (72), Expect = 0.047
Identities = 13/88 (14%), Positives = 26/88 (29%), Gaps = 7/88 (7%)
Query: 61 NPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTVIG 120
+ F +++ + GV ++ + R+F V P+
Sbjct: 158 EYLALIFEXGGSYLAREVALDL----SQHKGVAVRRVLNTEA--NVVRKFGVTDFPSCYL 211
Query: 121 F-RNGDPVDTVVGNADQDVIQTLVSKLS 147
RNG V + + +LS
Sbjct: 212 LFRNGSVSRVPVLMESRSFYTAYLQRLS 239
>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like,
C-terminal domain, reduced form at PH7, oxidoreductase;
0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A
2fwf_A 2fwg_A 1vrs_D 1uc7_A
Length = 134
Score = 47.5 bits (113), Expect = 8e-08
Identities = 23/123 (18%), Positives = 45/123 (36%), Gaps = 14/123 (11%)
Query: 38 QAVQMAYLIIEKIDDFKQTIRGRN--PVLAYFFKPSCGFCKQLEPKI---STVSETTSGV 92
+ + I+ +D+ Q + PV+ + C CK+ E V + +
Sbjct: 7 TQTHLNFTQIKTVDELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALADT 66
Query: 93 EFVKINVENGGGE---IAREFEVQAVPTVIGF-RNGD--PVDTVVGNADQDVIQTLVSKL 146
++ NV + + + V +PT++ F G P V G D + T + L
Sbjct: 67 VLLQANVTANDAQDVALLKHLNVLGLPTILFFDGQGQEHPQARVTGFMDAE---TFSAHL 123
Query: 147 SQK 149
+
Sbjct: 124 RDR 126
>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase,
sulfur oxidation, thiol- disulfide oxidoreductase; HET:
MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*
Length = 116
Score = 45.8 bits (108), Expect = 2e-07
Identities = 14/94 (14%), Positives = 34/94 (36%), Gaps = 6/94 (6%)
Query: 61 NPVLAYFFKPSCGFCKQLEPKISTVSETTS-----GVEFVKINVENGGGEIAREFEVQAV 115
L F +P C +C + + +I+ T V+ +++ + + V
Sbjct: 19 ELRLLMFEQPGCLYCARWDAEIAPQYPLTDEGRAAPVQRLQMR-DPLPPGLELARPVTFT 77
Query: 116 PTVIGFRNGDPVDTVVGNADQDVIQTLVSKLSQK 149
PT + + G +D ++++L +
Sbjct: 78 PTFVLMAGDVESGRLEGYPGEDFFWPMLARLIGQ 111
>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR
{Methanothermobacter thermautotrophicusorganism_taxid}
SCOP: c.47.1.1
Length = 85
Score = 44.2 bits (105), Expect = 4e-07
Identities = 12/55 (21%), Positives = 24/55 (43%), Gaps = 4/55 (7%)
Query: 67 FFKPSCGFCKQLEPKISTVSETTSG-VEFVKINV-ENGGGEIAREFEVQAVPTVI 119
F P+C +C + + ++ KI++ + E A E+ + AVP +
Sbjct: 8 FTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVD--REKAIEYGLMAVPAIA 60
>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19,
structural genomics, PSI, protein structure initiative;
1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A
Length = 164
Score = 45.4 bits (107), Expect = 7e-07
Identities = 17/80 (21%), Positives = 33/80 (41%), Gaps = 4/80 (5%)
Query: 62 PVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENGGGEIAREFEVQA--VPTV 118
P++ K CG CK L+PK + +E + FV +N+E+ +F +P +
Sbjct: 48 PLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEPKDEDFSPDGGYIPRI 107
Query: 119 IGF-RNGDPVDTVVGNADQD 137
+ +G ++
Sbjct: 108 LFLDPSGKVHPEIINENGNP 127
>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A
{Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A
Length = 361
Score = 46.2 bits (109), Expect = 8e-07
Identities = 19/76 (25%), Positives = 28/76 (36%), Gaps = 1/76 (1%)
Query: 51 DDFKQTIRGRN-PVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIARE 109
+F+ V F+ P CG CKQL P + ET E + I +
Sbjct: 257 KNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANEVEA 316
Query: 110 FEVQAVPTVIGFRNGD 125
+V + PT+ F
Sbjct: 317 VKVHSFPTLKFFPASA 332
Score = 29.7 bits (66), Expect = 0.34
Identities = 16/122 (13%), Positives = 38/122 (31%), Gaps = 5/122 (4%)
Query: 32 HLPNLIQAVQMAYLIIEKIDDFKQTIRGRNP-VLAYFFKPSCGFCKQLEPKISTVSETTS 90
+L + I+ Q+ +I + G + F S T +E+
Sbjct: 106 NLLDFIKHNQLPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFK 165
Query: 91 G-VEFVKINV-ENGGGEIAREFEVQA--VPTVIGFRNGDPVDTVVGNADQDVIQTLVSKL 146
G + F+ I+ I F ++ P V + + +++ + +
Sbjct: 166 GKILFIFIDSDHTDNQRILEFFGLKKEECPAVRLITLEEEMTKYKPESEELTAERITEFC 225
Query: 147 SQ 148
+
Sbjct: 226 HR 227
>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural
genomics, PSI, protein structure initiative; 1.12A
{Mycobacterium tuberculosis} SCOP: c.47.1.10
Length = 136
Score = 42.7 bits (101), Expect = 4e-06
Identities = 24/115 (20%), Positives = 37/115 (32%), Gaps = 27/115 (23%)
Query: 58 RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVEN---------------- 101
+G+ P + +F+ P C FC P +S V+ V FV I
Sbjct: 23 QGK-PAVLWFWTPWCPFCNAEAPSLSQVAAANPAVTFVGIATRADVGAMQSFVSKYNLNF 81
Query: 102 -----GGGEIAREFEVQAVPT--VIGFRNG--DPVDTVVGNADQDVIQTLVSKLS 147
G I + V P +G V+ QD + V+ L+
Sbjct: 82 TNLNDADGVIWARYNVPWQPAFVFYR-ADGTSTFVNNPTAAMSQDELSGRVAALT 135
>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 133
Score = 42.7 bits (101), Expect = 4e-06
Identities = 23/91 (25%), Positives = 37/91 (40%), Gaps = 10/91 (10%)
Query: 51 DDFKQTIRGRN-PVLAYFFKPSCGFCKQLEP---KISTVSETTSGVEFVKINV-ENGGGE 105
F + VL F+ P CG CKQLEP + + + K++ N
Sbjct: 15 KTFDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDATAN--DI 72
Query: 106 IAREFEVQAVPTVIGFRNGD---PVDTVVGN 133
+++V+ PT+ +GD P+ GN
Sbjct: 73 TNDQYKVEGFPTIYFAPSGDKKNPIKFEGGN 103
>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics,
NPPSFA, national project protein structural and
functional analyses; 2.30A {Aquifex aeolicus} PDB:
2ayt_A
Length = 229
Score = 43.5 bits (102), Expect = 6e-06
Identities = 21/129 (16%), Positives = 43/129 (33%), Gaps = 9/129 (6%)
Query: 25 AALPPRAHLPNLIQAVQMAYLIIEKID-DFKQTIRG--RNPVLAYFFKPSCGFCKQLEPK 81
LP LI + ++ + ++ + F SCG+C
Sbjct: 98 IGLPAGLEFTTLINGIFHVSQRKPQLSEKTLELLQVVDIPIEIWVFVTTSCGYCPSAAVM 157
Query: 82 ISTVSETTSGVEFVKINV-ENGGGEIAREFEVQAVPTVIGFRNGDPVDTVVGNADQDVIQ 140
+ + I+ EN ++A +F+V VP + N + VG ++
Sbjct: 158 AWDFALANDYITSKVIDASENQ--DLAEQFQVVGVPKI--VINKGVAE-FVGAQPENAFL 212
Query: 141 TLVSKLSQK 149
+ + +K
Sbjct: 213 GYIMAVYEK 221
Score = 38.5 bits (89), Expect = 3e-04
Identities = 15/102 (14%), Positives = 37/102 (36%), Gaps = 5/102 (4%)
Query: 53 FKQTIRGRNPVLAYFFKPSCGFCKQLEP---KISTVSETTSGVEFVKINVENGG--GEIA 107
++ + + + C C+ E + V G + +K+++ + E
Sbjct: 15 AQKEFKEPVSIKLFSQAIGCESCQTAEELLKETVEVIGEAVGQDKIKLDIYSPFTHKEET 74
Query: 108 REFEVQAVPTVIGFRNGDPVDTVVGNADQDVIQTLVSKLSQK 149
++ V VPT++ + D +G TL++ +
Sbjct: 75 EKYGVDRVPTIVIEGDKDYGIRYIGLPAGLEFTTLINGIFHV 116
>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain
(residues 33-153), D domain (residues 154-261), CHA;
2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A
Length = 240
Score = 42.3 bits (99), Expect = 2e-05
Identities = 16/82 (19%), Positives = 34/82 (41%), Gaps = 7/82 (8%)
Query: 51 DDFKQTIRGRNPVLAYFFKPSCGFCKQLEP-KISTVSETTSGVEFVKINVENGGG----E 105
F + I VL F KQ E +++ S ++ + ++ + + G E
Sbjct: 13 VTFYKVIPKSKFVLVKFDTQYPYGEKQDEFKRLAENSASSDDLLVAEVGISDYGDKLNME 72
Query: 106 IAREFEVQAV--PTVIGFRNGD 125
++ ++++ P FR+GD
Sbjct: 73 LSEKYKLDKESYPVFYLFRDGD 94
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain,
endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Length = 210
Score = 41.0 bits (96), Expect = 4e-05
Identities = 16/97 (16%), Positives = 32/97 (32%), Gaps = 2/97 (2%)
Query: 51 DDFKQTIRGRNPVLAYFFKPSCGFCKQLEPK-ISTVSETTSGVEFVKINVENGGGEIARE 109
+F + F+ P C C L P E + +N + + R
Sbjct: 105 REFDAAVNSGELWFVNFYSPGCSHCHDLAPTWREFAKEVDGLLRIGAVNCGDDRM-LCRM 163
Query: 110 FEVQAVPTVIGFRNGDPVDTVVGNADQDVIQTLVSKL 146
V + P++ FR+G G+ ++ + +
Sbjct: 164 KGVNSYPSLFIFRSGMAAVKYNGDRSKESLVAFAMQH 200
>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein
structure initiative, TB structural genomics consortium,
TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP:
c.47.1.10 PDB: 3ios_A
Length = 136
Score = 40.0 bits (94), Expect = 4e-05
Identities = 24/116 (20%), Positives = 42/116 (36%), Gaps = 27/116 (23%)
Query: 58 RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENG--------------- 102
G+ P + +F+ P C C+ P + V+ + V FV + +
Sbjct: 24 LGK-PAVLWFWAPWCPTCQGEAPVVGQVAASHPEVTFVGVAGLDQVPAMQEFVNKYPVKT 82
Query: 103 -------GGEIAREFEVQAVPT--VIGFRNGDPVDTVVGNADQDVIQTLVSKLSQK 149
G + F V P + +G+ VD V G QD + V+ L+ +
Sbjct: 83 FTQLADTDGSVWANFGVTQQPAYAFVD-PHGN-VDVVRGRMSQDELTRRVTALTSR 136
>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A
{Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A
Length = 123
Score = 40.1 bits (93), Expect = 4e-05
Identities = 19/100 (19%), Positives = 38/100 (38%), Gaps = 16/100 (16%)
Query: 41 QMAYLIIEKIDDFKQTIRGRN--PVLAYFF-------KPSCGFCKQLEPKI-STVSETTS 90
+ + + ++F + + N + AYF K C C Q EP + + +
Sbjct: 3 RYEEVSVSGFEEFHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISE 62
Query: 91 GVEFVKINVE------NGGGEIAREFEVQAVPTVIGFRNG 124
G F+ V + + + +V AVPT++ +
Sbjct: 63 GCVFIYCQVGEKPYWKDPNNDFRKNLKVTAVPTLLKYGTP 102
>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein
disulfide isomerase, endoplasmic R isomerase; 1.83A
{Homo sapiens}
Length = 151
Score = 40.0 bits (93), Expect = 5e-05
Identities = 10/74 (13%), Positives = 28/74 (37%), Gaps = 3/74 (4%)
Query: 62 PVLAYFFKPSCGFCKQLEPKISTVSET--TSGVEFVKINVENGGGEIAREFEVQAVPTVI 119
P++ C + + L+ + E + +F+ +N+ + + + Q VP ++
Sbjct: 46 PLMVIHHLEDCQYSQALKKVFAQNEEIQEMAQNKFIMLNLMHETTDKNLSPDGQYVPRIM 105
Query: 120 GFR-NGDPVDTVVG 132
+ + G
Sbjct: 106 FVDPSLTVRADIAG 119
>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines
missing, unknown funct; 1.50A {Trypanosoma cruzi}
Length = 127
Score = 39.6 bits (93), Expect = 6e-05
Identities = 8/82 (9%), Positives = 19/82 (23%), Gaps = 8/82 (9%)
Query: 51 DDFKQTIRGRN-PVLAYFFKPSCGFCKQLEP------KISTVSETTSGVEFVKINVENGG 103
+ F + V ++ P + +I+
Sbjct: 23 ETFDSIVMDPEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAARIDG-EKY 81
Query: 104 GEIAREFEVQAVPTVIGFRNGD 125
++ V PT+ + D
Sbjct: 82 PDVIERMRVSGFPTMRYYTRID 103
>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics
research consortium, oxidoreductase; NMR {Thermus
thermophilus}
Length = 130
Score = 39.3 bits (92), Expect = 8e-05
Identities = 18/80 (22%), Positives = 31/80 (38%), Gaps = 9/80 (11%)
Query: 62 PVLAYFFKPSCGFCKQLEPKI---STVSETTSGV-EFVKINVENGGG-EIAREFEVQAVP 116
V+ YF C +C+Q+ + VS ++V+ G E+AR + V P
Sbjct: 21 MVMVYFHSEHCPYCQQMNTFVLSDPGVSRLLEARFVVASVSVDTPEGQELARRYRVPGTP 80
Query: 117 TVIGF----RNGDPVDTVVG 132
T + + V + G
Sbjct: 81 TFVFLVPKAGAWEEVGRLFG 100
>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola
insolens} SCOP: c.47.1.2 PDB: 2kp1_A
Length = 121
Score = 38.9 bits (91), Expect = 8e-05
Identities = 21/88 (23%), Positives = 32/88 (36%), Gaps = 13/88 (14%)
Query: 51 DDFKQTIRGRN-PVLAYFFKPSCGFCKQLEP------KISTVSETTSGVEFVKINV-ENG 102
++ + + VL F+ P CG CK L P + SE V K++ N
Sbjct: 15 KNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATAN- 73
Query: 103 GGEIAREFEVQAVPTVIGFRNGDPVDTV 130
E+Q PT+ + G V
Sbjct: 74 ----DVPDEIQGFPTIKLYPAGAKGQPV 97
>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul
structural genomics, PSI-2, protein structure
initiative; 1.30A {Xylella fastidiosa}
Length = 133
Score = 38.7 bits (90), Expect = 1e-04
Identities = 19/89 (21%), Positives = 31/89 (34%), Gaps = 9/89 (10%)
Query: 53 FKQTIRGRNPVLAYFFKPSCGFCKQLEPKIST---VSETTSGVEFVKINVENG--GGEIA 107
R P L F C C+ L+ + + E VKI+V N E++
Sbjct: 22 LAAGKRTHKPTLLVFGANWCTDCRALDKSLRNQKNTALIAKHFEVVKIDVGNFDRNLELS 81
Query: 108 REF---EVQAVPTVIGF-RNGDPVDTVVG 132
+ + +P V+ +G T G
Sbjct: 82 QAYGDPIQDGIPAVVVVNSDGKVRYTTKG 110
>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus
subtilis} SCOP: c.47.1.10 PDB: 2b5y_A
Length = 148
Score = 37.7 bits (88), Expect = 3e-04
Identities = 18/118 (15%), Positives = 41/118 (34%), Gaps = 31/118 (26%)
Query: 58 RGRNPVLAYFFKPSCGFCKQLEPKISTVSETT-SGVEFVKINV----------------- 99
+ P L +F+ SC CK+ P+++ + + V +++
Sbjct: 28 GEK-PTLIHFWSISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMPRSEDDLDPGKIKETAA 86
Query: 100 ENG---------GGEIAREFEVQAVPT--VIGFRNGDPVDTVVGNADQDVIQTLVSKL 146
E+ + FE + VP V + G G + +++ V+++
Sbjct: 87 EHDITQPIFVDSDHALTDAFENEYVPAYYVFD-KTGQLRHFQAGGSGMKMLEKRVNRV 143
>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A
{Aeropyrum pernix}
Length = 243
Score = 37.9 bits (87), Expect = 5e-04
Identities = 21/132 (15%), Positives = 42/132 (31%), Gaps = 12/132 (9%)
Query: 3 SFRRSAAAHVTFHNSGGKLSARAALPPRAHLPNLIQAVQMAYLIIEKIDD-FKQTIRG-- 59
F+ V F + +P + L++ + ++D K+ ++
Sbjct: 81 EFKVERVPTVAFLGGEVRW---TGIPAGEEIRALVEVIMRLSEDESGLEDATKEALKSLK 137
Query: 60 RNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVE----NGGGEIAREFEVQAV 115
+ PSC +C + I E +IA ++ V +V
Sbjct: 138 GRVHIETIITPSCPYCPYAVLLAHMFAYEAWKQGNPVILSEAVEAYENPDIADKYGVMSV 197
Query: 116 PTVIGFRNGDPV 127
P++ NG V
Sbjct: 198 PSI--AINGYLV 207
>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET:
MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB:
1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A
3c73_A
Length = 151
Score = 37.2 bits (87), Expect = 5e-04
Identities = 22/114 (19%), Positives = 41/114 (35%), Gaps = 27/114 (23%)
Query: 58 RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTS--GVEFVKINVENG------------- 102
+G+ V F+ C CK+ P ++ + GVE V +NV
Sbjct: 25 KGK-GVFLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGV 83
Query: 103 --------GGEIAREFEVQAVPT--VIGFRNGDPVDTVVGNADQDVIQTLVSKL 146
++ ++V +PT +I G V V G + +I ++ +
Sbjct: 84 NFPVVLDTDRQVLDAYDVSPLPTTFLIN-PEGKVVKVVTGTMTESMIHDYMNLI 136
>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD,
structural genomics, protein structure initiative; 1.80A
{Rhodopseudomonas palustris}
Length = 137
Score = 36.2 bits (83), Expect = 0.001
Identities = 5/55 (9%), Positives = 16/55 (29%), Gaps = 1/55 (1%)
Query: 92 VEFVKINVENGGGEIAREFEVQAVPTVIGFRNGDPVDTVVGNADQDVIQTLVSKL 146
+ ++ E + F V P++ + + + D + +
Sbjct: 68 LVAAEVAAEAER-GLMARFGVAVCPSLAVVQPERTLGVIAKIQDWSSYLAQIGAM 121
>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB
struct genomics consortium, TBSGC, unknown function;
1.90A {Mycobacterium tuberculosis}
Length = 352
Score = 36.1 bits (83), Expect = 0.002
Identities = 21/119 (17%), Positives = 37/119 (31%), Gaps = 32/119 (26%)
Query: 58 RGRNPVLAYFFKPSCGFCKQLEPKISTVSET--TSGVEFVKINVENGG------------ 103
RG+ VL F+ SC C++ P + + SG+ + ++
Sbjct: 81 RGK-VVLIDFWAYSCINCQRAIPHVVGWYQAYKDSGLAVIGVHTPEYAFEKVPGNVAKGA 139
Query: 104 --------------GEIAREFEVQAVPT--VIGFRNGDPVDTVVGNADQDVIQTLVSKL 146
+ + P +I G G D +V +TLV +L
Sbjct: 140 ANLGISYPIALDNNYATWTNYRNRYWPAEYLID-ATGTVRHIKFGEGDYNVTETLVRQL 197
>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural
genomics, midwest CE structural genomics; HET: MSE;
2.20A {Corynebacterium glutamicum}
Length = 160
Score = 35.2 bits (81), Expect = 0.003
Identities = 16/127 (12%), Positives = 35/127 (27%), Gaps = 40/127 (31%)
Query: 58 RGRNPVLAYFFKPSCGFCKQLE-PKISTVSETTS--GVEFVKINVENGGGE--------- 105
RG+ V+ F+ C C P+ + V+ + ++ +
Sbjct: 29 RGK-VVVVEVFQMLCPGCVNHGVPQAQKIHRMIDESQVQVIGLHSVFEHHDVMTPEALKV 87
Query: 106 ------------------------IAREFEVQAVPT--VIGFRNGDPVDTVVGNADQDVI 139
+++ ++ P+ + R G G D V+
Sbjct: 88 FIDEFGIKFPVAVDMPREGQRIPSTMKKYRLEGTPSIILAD-RKGRIRQVQFGQVDDFVL 146
Query: 140 QTLVSKL 146
L+ L
Sbjct: 147 GLLLGSL 153
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.8 bits (82), Expect = 0.004
Identities = 28/169 (16%), Positives = 54/169 (31%), Gaps = 70/169 (41%)
Query: 21 LSARAALPPRAHL-------PNLIQAVQMA-YLIIEKI-----DDFKQTIRG-------- 59
L + P + +L P LI +Q+A Y++ K+ + + ++G
Sbjct: 219 LENPSNTPDKDYLLSIPISCP-LIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGL 277
Query: 60 ----------------RNPVLAY---FFKPSCGF-CKQLEPKISTVSETTSGVEFVKINV 99
+ A FF G C + P S ++ ++
Sbjct: 278 VTAVAIAETDSWESFFVSVRKAITVLFF---IGVRCYEAYPNTSLPPSI------LEDSL 328
Query: 100 ENGGGEIAREFEVQAVPTVIGFRNGDPVDTVVGNADQDVIQTLVSKLSQ 148
EN G VP+ P+ ++ Q+ +Q V+K +
Sbjct: 329 ENNEG----------VPS--------PMLSISN-LTQEQVQDYVNKTNS 358
>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2,
protein struct initiative; NMR {Neisseria meningitidis
serogroup B}
Length = 153
Score = 34.6 bits (80), Expect = 0.004
Identities = 21/118 (17%), Positives = 37/118 (31%), Gaps = 28/118 (23%)
Query: 58 RGRNPVLAYFFKPSCGFCKQLEPKISTVSET--TSGVEFVKINVENGG------------ 103
+G+ L F+ PSC C PKI + + + +
Sbjct: 27 QGK-VTLINFWFPSCPGCVSEMPKIIKTANDYKNKNFQVLAVAQPIDPIESVRQYVKDYG 85
Query: 104 ----------GEIAREFEVQAVPT--VIGFRNGDPVDTVVGNADQDVIQTLVSKLSQK 149
+ + F Q PT +IG + G+ + T VG D + + +
Sbjct: 86 LPFTVMYDADKAVGQAFGTQVYPTSVLIG-KKGEILKTYVGEPDFGKLYQEIDTAWRN 142
>4evm_A Thioredoxin family protein; structural genomics, niaid, national
institute of allergy AN infectious diseases; 1.51A
{Streptococcus pneumoniae}
Length = 138
Score = 34.2 bits (79), Expect = 0.006
Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 104 GEIAREFEVQAVPT--VIGFRNGDPVDTVVGNADQDVIQTLVSKLS 147
G++ + V++ PT I + G V T G ++D I + +L+
Sbjct: 94 GKLLETYGVRSYPTQAFID-KEGKLVKTHPGFMEKDAILQTLKELA 138
>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like
fold, RESA-like fold, dithiol, STOA, redox-active
center; 2.50A {Bacillus subtilis}
Length = 145
Score = 33.8 bits (78), Expect = 0.007
Identities = 18/114 (15%), Positives = 42/114 (36%), Gaps = 30/114 (26%)
Query: 58 RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTS--GVEFVKINVENGG------------ 103
+G+ + +F+ C CK+ P+ + + V+ V +N+ N
Sbjct: 33 KGQ-KTILHFWTSWCPPCKKELPQFQSFYDAHPSDSVKLVTVNLVNSEQNQQVVEDFIKA 91
Query: 104 ------------GEIAREFEVQAVPT--VIGFRNGDPVDTVVGNADQDVIQTLV 143
GE+ +E+ + +PT ++ G+ T +G + ++
Sbjct: 92 NKLTFPIVLDSKGELMKEYHIITIPTSFLLN-EKGEIEKTKIGPMTAEQLKEWT 144
>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily
protein SPOA0173, silicibacter DSS, structural genomics,
PSI-2; 1.95A {Silicibacter pomeroyi}
Length = 158
Score = 33.6 bits (77), Expect = 0.012
Identities = 15/126 (11%), Positives = 35/126 (27%), Gaps = 39/126 (30%)
Query: 58 RGRNPVLAYFFKPSCGFCKQLE-PKISTVSETTS--GVEFVKINVENGGGE--------- 105
RG+ ++ F+ C C P V V + ++ E
Sbjct: 27 RGK-VIVIEAFQMLCPGCVMHGIPLAQKVRAAFPEDKVAVLGLHTVFEHHEAMTPISLKA 85
Query: 106 -----------------------IAREFEVQAVPT--VIGFRNGDPVDTVVGNADQDVIQ 140
++++ P+ +I + GD G+ + ++
Sbjct: 86 FLHEYRIKFPVGVDQPGDGAMPRTMAAYQMRGTPSLLLID-KAGDLRAHHFGDVSELLLG 144
Query: 141 TLVSKL 146
++ L
Sbjct: 145 AEIATL 150
>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein
disulfide isomerase, protein folding, redox protein,
redox-active center; HET: MES; 1.90A {Escherichia coli}
SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A
2iyj_A
Length = 216
Score = 32.1 bits (72), Expect = 0.039
Identities = 8/61 (13%), Positives = 23/61 (37%)
Query: 51 DDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREF 110
+ V+ F +CG+C +L +++ + V ++ + + +E
Sbjct: 77 EMIVYKAPQEKHVITVFTDITCGYCHKLHEQMADYNALGITVRYLAFPRQGLDSDAEKEM 136
Query: 111 E 111
+
Sbjct: 137 K 137
>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase,
disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB:
3dvw_A 3a3t_A
Length = 193
Score = 31.7 bits (71), Expect = 0.064
Identities = 9/47 (19%), Positives = 17/47 (36%), Gaps = 1/47 (2%)
Query: 62 PVLAYFFKPSCGFCKQLEPKISTVSET-TSGVEFVKINVENGGGEIA 107
+ FF C C LEP +S +++ + +V +
Sbjct: 26 VEVLEFFGYFCPHCAHLEPVLSKHAKSFKDDMYLRTEHVVWQKEMLT 72
>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural
genomics, PSI-2, protein STRU initiative; 2.70A
{Shigella flexneri 2A} PDB: 2hfd_A
Length = 140
Score = 31.2 bits (70), Expect = 0.074
Identities = 8/42 (19%), Positives = 13/42 (30%)
Query: 105 EIAREFEVQAVPTVIGFRNGDPVDTVVGNADQDVIQTLVSKL 146
I F P + F G+ + G + L+ L
Sbjct: 82 AIGDRFGAFRFPATLVFTGGNYRGVLNGIHPWAELINLMRGL 123
>1un2_A DSBA, thiol-disulfide interchange protein; disulfide
oxidoreductase, oxidoreductase, protein disulfide
isomerase, protein folding, thioredoxin; 2.4A
{Escherichia coli} SCOP: c.47.1.13
Length = 197
Score = 31.3 bits (70), Expect = 0.075
Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 4/48 (8%)
Query: 67 FFKPSCGFCKQLEPKISTVSETT----SGVEFVKINVENGGGEIAREF 110
FF C C Q E + GV+ K +V GG++ ++
Sbjct: 120 FFSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYHVNFMGGDLGKDL 167
>3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825
/ FA 1090), DSBC, structural genomics, unknown funct 2;
2.00A {Neisseria gonorrhoeae}
Length = 147
Score = 30.4 bits (68), Expect = 0.11
Identities = 21/128 (16%), Positives = 39/128 (30%), Gaps = 45/128 (35%)
Query: 63 VLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGG------------------ 104
+A F P C FCK+LE + +++ T + I +
Sbjct: 17 KVAVFSDPDCPFCKRLEHEFEKMTDVTVYSFMMPIAGLHPDAARKAQILWCQPDRAKAWT 76
Query: 105 -----------------------EIAREFEVQAVPTVIGFRNGDPVDTVVGNADQDVIQT 141
+ +F PT++ F NG T G + ++
Sbjct: 77 DWMRKGKFPVGGSICDNPVAETTSLGEQFGFNGTPTLV-FPNG---RTQSGYSPMPQLEE 132
Query: 142 LVSKLSQK 149
++ K Q+
Sbjct: 133 IIRKNQQE 140
>1bed_A DSBA oxidoreductase; TCPG, protein disulfide isomerase, disulfide
oxidoreductase; 2.00A {Vibrio cholerae} SCOP: c.47.1.13
PDB: 2ijy_A
Length = 181
Score = 30.4 bits (68), Expect = 0.16
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 62 PVLAYFFKPSCGFCKQLEPKISTVSET-TSGVEFVKINVENGGGEIARE 109
PV++ FF C C EP I+ + + G +F K +V GG + +
Sbjct: 20 PVVSEFFSFYCPHCNTFEPIIAQLKQQLPEGAKFQKNHVSFMGGNMGQA 68
>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II,
structural genomics, protein structure initiative; 1.66A
{Chlorobaculum tepidum}
Length = 165
Score = 30.0 bits (68), Expect = 0.16
Identities = 21/119 (17%), Positives = 36/119 (30%), Gaps = 32/119 (26%)
Query: 58 RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTS--GVEFVKINVENG------------- 102
+G+ + FF C C+ P + V +T + G FV I V
Sbjct: 33 KGK-AYIVNFFATWCPPCRSEIPDMVQVQKTWASRGFTFVGIAVNEQLPNVKNYMKTQGI 91
Query: 103 -------------GGEIAREFEVQAVPT--VIGFRNGDPVDTVVGNADQDVIQTLVSKL 146
+ + +PT VI +G+ +VG + +V
Sbjct: 92 IYPVMMATPELIRAFNGYIDGGITGIPTSFVID-ASGNVSGVIVGPRSKADFDRIVKMA 149
>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI,
structural genomics, protein initiative; 2.45A
{Geobacter metallireducens gs-15}
Length = 154
Score = 30.0 bits (68), Expect = 0.16
Identities = 23/121 (19%), Positives = 47/121 (38%), Gaps = 31/121 (25%)
Query: 58 RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTS--GVEFVKINVENGG------------ 103
+G+ V+ F+ C C++ P + ++ + + ++++ GG
Sbjct: 27 KGQ-VVIVNFWATWCPPCREEIPSMMRLNAAMAGKPFRMLCVSIDEGGKVAVEEFFRKTG 85
Query: 104 ----------GEIAREFEVQAVPT--VIGFRNGDPVDTVVGNADQD---VIQTLVSKLSQ 148
+ + + VP VI R+G + VVG + D VI L ++LS+
Sbjct: 86 FTLPVLLDADKRVGKLYGTTGVPETFVID-RHGVILKKVVGAMEWDHPEVIAFLNNELSK 144
Query: 149 K 149
Sbjct: 145 A 145
>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation,
blood coagulation, oxidoreduc blood
coagulation,oxidoreductase; HET: U10; 3.60A
{Synechococcus SP}
Length = 291
Score = 30.4 bits (67), Expect = 0.16
Identities = 7/54 (12%), Positives = 14/54 (25%)
Query: 64 LAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPT 117
+ C C+ + + VE + E + + PT
Sbjct: 201 GTMYGAYWCPHCQDQKELFGAAFDQVPYVECSPNGPGTPQAQECTEAGITSYPT 254
>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP:
c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A
Length = 85
Score = 29.1 bits (66), Expect = 0.16
Identities = 11/65 (16%), Positives = 22/65 (33%), Gaps = 16/65 (24%)
Query: 69 KPSCGFC---KQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTVIGFRNGD 125
+ C +C K L +S ++ +++ G + + G
Sbjct: 8 RSGCPYCVRAKDL---AEKLSNERDDFQYQYVDIRAEGITKEDLQQ----------KAGK 54
Query: 126 PVDTV 130
PV+TV
Sbjct: 55 PVETV 59
>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
c.47.1.24
Length = 153
Score = 29.9 bits (67), Expect = 0.20
Identities = 7/63 (11%), Positives = 19/63 (30%), Gaps = 5/63 (7%)
Query: 62 PVLAYFFKPSCGFCKQLEPKI---STVSETTSG-VEFVKINVENG-GGEIAREFEVQAVP 116
++ C+ L + V F ++ ++ G + +++ P
Sbjct: 44 WLMINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQVYHDSEEGQRYIQFYKLGDFP 103
Query: 117 TVI 119
V
Sbjct: 104 YVS 106
>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein
disulfide isomerase, protein folding, redox protein;
2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1
Length = 211
Score = 29.9 bits (66), Expect = 0.22
Identities = 10/77 (12%), Positives = 28/77 (36%)
Query: 35 NLIQAVQMAYLIIEKIDDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEF 94
++ + + L K + + V+ F +C +C L ++ ++ V +
Sbjct: 61 DVAGKILVDKLNSYKDEMIVYPAKNEKHVVTVFMDITCHYCHLLHQQLKEYNDLGITVRY 120
Query: 95 VKINVENGGGEIAREFE 111
+ + A++ E
Sbjct: 121 LAFPRAGMNNQTAKQME 137
>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA,
thioredoxin fold, redox- active center; 1.90A {Xylella
fastidiosa}
Length = 193
Score = 29.7 bits (66), Expect = 0.25
Identities = 8/43 (18%), Positives = 13/43 (30%), Gaps = 1/43 (2%)
Query: 62 PVLAYFFKPSCGFCKQLEPKISTVSETT-SGVEFVKINVENGG 103
+ F +C C + K+ V F + GG
Sbjct: 27 IEVVEIFGYTCPHCAHFDSKLQAWGARQAKDVRFTLVPAVFGG 69
>3l9v_A Putative thiol-disulfide isomerase or thioredoxin;
thioredoxin-fold, SRGA, thiol-disulfide oxidoreductase,
ISOM oxidoreductase; HET: PE8 P4C P6G; 2.15A {Salmonella
enterica subsp}
Length = 189
Score = 29.2 bits (64), Expect = 0.36
Identities = 10/46 (21%), Positives = 13/46 (28%), Gaps = 4/46 (8%)
Query: 62 PVLAYFFKPSCGFCKQLEPKISTVSE----TTSGVEFVKINVENGG 103
P + FF C C + G VK +V G
Sbjct: 16 PAVVEFFSFYCPPCYAFSQTMGVDQAIRHVLPQGSRMVKYHVSLLG 61
>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase,
PSI-II, structural genomics, protein structure
initiative; 2.09A {Chlorobium tepidum tls}
Length = 152
Score = 29.2 bits (66), Expect = 0.37
Identities = 24/116 (20%), Positives = 44/116 (37%), Gaps = 29/116 (25%)
Query: 58 RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTS--GVEFVKINVENG------------- 102
G V F+ CG C+Q P ++ + G + V +N++
Sbjct: 27 TGS-VVYLDFWASWCGPCRQSFPWMNQMQAKYKAKGFQVVAVNLDAKTGDAMKFLAQVPA 85
Query: 103 --------GGEIAREFEVQAVPT--VIGFRNGDPVDTVVG--NADQDVIQTLVSKL 146
G+ R + V+ +PT +I RNG + VG AD++ ++ +
Sbjct: 86 EFTVAFDPKGQTPRLYGVKGMPTSFLID-RNGKVLLQHVGFRPADKEALEQQILAA 140
>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond,
redox-active center, transcription regulator; HET: MSE
GOL; 1.50A {Pseudomonas aeruginosa PAO1}
Length = 192
Score = 29.0 bits (64), Expect = 0.42
Identities = 12/42 (28%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 62 PVLAYFFKPSCGFCKQLEPKISTVSET-TSGVEFVKINVENG 102
+ F C C EP I SE + V FV++ G
Sbjct: 27 IEVVELFWYGCPHCYAFEPTIVPWSEKLPADVHFVRLPALFG 68
>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure
initiative II(PSI II), NYSGXRC, structural genomics;
2.35A {Bordetella parapertussis}
Length = 195
Score = 29.2 bits (65), Expect = 0.44
Identities = 9/47 (19%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 62 PVLAYFFKPSCGFCKQLEPKISTVSETT-SGVEFVKINVENGGGEIA 107
+ FF +C C +EP + ++T V ++ + G
Sbjct: 27 IEVLEFFAYTCPHCAAIEPMVEDWAKTAPQDVVLKQVPIAFNAGMKP 73
>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold,
DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis
serogroup B} PDB: 3dvx_A
Length = 195
Score = 29.0 bits (64), Expect = 0.46
Identities = 7/47 (14%), Positives = 14/47 (29%), Gaps = 1/47 (2%)
Query: 62 PVLAYFFKPSCGFCKQLEPKISTVSET-TSGVEFVKINVENGGGEIA 107
+ FF C C +P + + + S +V +
Sbjct: 24 IEVLEFFGYFCVHCHHFDPLLLKLGKALPSDAYLRTEHVVWQPEMLG 70
>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide
formation, redox partner, oxidoreductase; 1.66A
{Synechococcus SP}
Length = 106
Score = 28.1 bits (62), Expect = 0.48
Identities = 7/52 (13%), Positives = 14/52 (26%)
Query: 66 YFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPT 117
+ C C+ + + VE + E + + PT
Sbjct: 18 MYGAYWCPHCQDQKELFGAAFDQVPYVECSPNGPGTPQAQECTEAGITSYPT 69
>2in3_A Hypothetical protein; DSBA family, FRNE-like subfamily, disulfide
isomerase, struc genomics, PSI-2, protein structure
initiative; 1.85A {Nitrosomonas europaea}
Length = 216
Score = 28.8 bits (64), Expect = 0.49
Identities = 5/45 (11%), Positives = 16/45 (35%)
Query: 105 EIAREFEVQAVPTVIGFRNGDPVDTVVGNADQDVIQTLVSKLSQK 149
+ ++ + P ++ D G + ++ L+ Q+
Sbjct: 167 QRVAQWGISGFPALVVESGTDRYLITTGYRPIEALRQLLDTWLQQ 211
>3c7m_A Thiol:disulfide interchange protein DSBA-like; redox protein,
periplasm, redox-active center, oxidoreductase; HET:
PGE; 1.55A {Escherichia coli} PDB: 3l9u_A
Length = 195
Score = 28.8 bits (63), Expect = 0.58
Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 2/56 (3%)
Query: 62 PVLAYFFKPSCGFCKQLEPKISTVSETT--SGVEFVKINVENGGGEIAREFEVQAV 115
L F +C FC + + ++ V F ++E G + EV AV
Sbjct: 19 KTLIKVFSYACPFCYKYDKAVTGPVSEKVKDIVAFTPFHLETKGEYGKQASEVFAV 74
>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3
component; oxidoreductase, homodimer, structural
genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus}
PDB: 2eq8_A* 2eq9_A*
Length = 464
Score = 29.0 bits (66), Expect = 0.59
Identities = 11/59 (18%), Positives = 20/59 (33%), Gaps = 4/59 (6%)
Query: 69 KPSCGFCKQLEPKISTVSETTSGVEFV----KINVENGGGEIAREFEVQAVPTVIGFRN 123
KP K + V + T GV + + + G + EV+ G ++
Sbjct: 76 KPELDLKKLGGWRDQVVKKLTGGVGTLLKGNGVELLRGFARLVGPKEVEVGGERYGAKS 134
>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura
genomics, PSI, protein structure initiative; 1.50A
{Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A
Length = 167
Score = 28.4 bits (63), Expect = 0.65
Identities = 13/86 (15%), Positives = 28/86 (32%), Gaps = 5/86 (5%)
Query: 37 IQAVQMAYLIIEKIDDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVK 96
+ + + + + Q I R +L + C C+ + +E
Sbjct: 32 FRQKLESNGLPSALTERLQRIERRYRLLV-AGEMWCPDCQINLAALDFAQRLQPNIELAI 90
Query: 97 INVENGGGEIAREF---EVQAVPTVI 119
I+ + R+ E A+P V+
Sbjct: 91 ISKG-RAEDDLRQRLALERIAIPLVL 115
>3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure
initiativ midwest center for structural genomics,
rossmann fold; 1.10A {Methanosarcina mazei}
Length = 103
Score = 27.8 bits (62), Expect = 0.67
Identities = 17/84 (20%), Positives = 29/84 (34%), Gaps = 26/84 (30%)
Query: 69 KPSCGFCK----QLEPKISTVSETTSGVEFVKINVENGGGEIAREF--EVQ------AVP 116
+C +CK L GV+F + V+ G+ E EV+ + P
Sbjct: 29 LSTCVWCKKTKKLLTDL---------GVDFDYVYVDRLEGKEEEEAVEEVRRFNPSVSFP 79
Query: 117 TVIGFRNGDPVDTVVGNADQDVIQ 140
T I D + + + I+
Sbjct: 80 TTI---IND--EKAIVGFKEKEIR 98
>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG,
structural genomics, midwest center for structural
genomics; 1.75A {Corynebacterium glutamicum}
Length = 183
Score = 28.2 bits (63), Expect = 0.74
Identities = 16/113 (14%), Positives = 31/113 (27%), Gaps = 36/113 (31%)
Query: 72 CGFCKQLEPKISTVSE--------TTSGVEFVKINVENGGGEIAREF------------- 110
C C+ + + E T G + INV + +IA++F
Sbjct: 71 CAPCRSESDDLQIIHEELQAAGNGDTPGGTVLGINVRDYSRDIAQDFVTDNGLDYPSIYD 130
Query: 111 ------------EVQAVPT--VIGFRNGDPVDTVVGNADQDVIQTLVSKLSQK 149
+PT V+ + P + + + L +
Sbjct: 131 PPFMTAASLGGVPASVIPTTIVLD-KQHRPAAVFLREVTSKDVLDVALPLVDE 182
>1kte_A Thioltransferase; redox-active center, electron transport,
acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB:
1jhb_A 1b4q_A*
Length = 105
Score = 27.5 bits (62), Expect = 0.80
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 67 FFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEI 106
F KP+C FC++ + +S + +EFV I + EI
Sbjct: 17 FIKPTCPFCRKTQELLSQLPFKEGLLEFVDITATSDTNEI 56
>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein
structure initiative, midwest center for structural
genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus}
Length = 92
Score = 27.2 bits (61), Expect = 0.94
Identities = 17/88 (19%), Positives = 33/88 (37%), Gaps = 29/88 (32%)
Query: 69 KPSCGFCKQ----LEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQA--------VP 116
+C CK+ L+ + GV+F I ++ GE ++ + VP
Sbjct: 19 LSTCPHCKRTLEFLKRE---------GVDFEVIWIDKLEGEERKKVIEKVHSISGSYSVP 69
Query: 117 T-VIGFRNGDPVDTVVGNADQDVIQTLV 143
V G D V +++ ++ L+
Sbjct: 70 VVVKG-------DKHVLGYNEEKLKELI 90
>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox
protein, protein disulfide isomerase, thioredoxin fold;
1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB:
1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A
Length = 241
Score = 28.1 bits (62), Expect = 1.1
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 63 VLAYFFKPSCGFCKQLEPKI 82
++ F P C +CKQ +
Sbjct: 100 IVYVFADPFCPYCKQFWQQA 119
>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase
subunit OST6; oxidoreductase, active site loop, redox
state, membrane; HET: PG4; 1.30A {Saccharomyces
cerevisiae} PDB: 3g7y_A 3g9b_A*
Length = 178
Score = 27.3 bits (60), Expect = 1.7
Identities = 11/57 (19%), Positives = 24/57 (42%), Gaps = 7/57 (12%)
Query: 71 SCGFCKQLEPKISTVSET------TSGVEFVKINVENGGGEIAREFEVQAVPTVIGF 121
SC C E V++ S F ++V ++ ++ ++Q VP ++ +
Sbjct: 55 SCQLCHDFEKTYHAVADVIRSQAPQSLNLFFTVDVNE-VPQLVKDLKLQNVPHLVVY 110
>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi
DSS-3, thioredoxin-like, oxidoreductase, structural
genomics, PSI-2; HET: MSE; 1.76A {Silicibacter
pomeroyi}
Length = 175
Score = 27.3 bits (61), Expect = 1.7
Identities = 6/33 (18%), Positives = 15/33 (45%)
Query: 63 VLAYFFKPSCGFCKQLEPKISTVSETTSGVEFV 95
+ FF +C +C++ ++ + + V V
Sbjct: 25 TVVEFFDYNCPYCRRAMAEVQGLVDADPNVRLV 57
>3l4n_A Monothiol glutaredoxin-6; C-terminal domain of GRX6,
oxidoreductase; HET: GSH; 1.50A {Saccharomyces
cerevisiae}
Length = 127
Score = 27.0 bits (60), Expect = 1.7
Identities = 8/60 (13%), Positives = 23/60 (38%), Gaps = 1/60 (1%)
Query: 52 DFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFE 111
I +P++ F K +C + K ++ + + ++++ G E+ +
Sbjct: 5 KEYSLILDLSPIII-FSKSTCSYSKGMKELLENEYQFIPNYYIIELDKHGHGEELQEYIK 63
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate
hydrogen bond, nucleotide binding fold, thior reductase,
thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium}
SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A
1zyp_A
Length = 521
Score = 27.7 bits (62), Expect = 1.8
Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 9/64 (14%)
Query: 67 FFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGG---EIAREFEVQAVPTVIGFRN 123
++ SC C + ++ ++ ++ I+ GG E V VP V F N
Sbjct: 124 YYSLSCHNCPDVVQALNLMAVLNPRIKHTAID----GGTFQNEITERNVMGVPAV--FVN 177
Query: 124 GDPV 127
G
Sbjct: 178 GKEF 181
>3tdg_A DSBG, putative uncharacterized protein; thioredoxin fold,
reductase, oxidoreductase; HET: P6G; 2.10A {Helicobacter
pylori}
Length = 273
Score = 27.3 bits (59), Expect = 1.9
Identities = 10/53 (18%), Positives = 17/53 (32%), Gaps = 6/53 (11%)
Query: 31 AHLPNLIQAVQMAYLIIEKIDDFKQTIRGRNPVLAYFFK-PSCGFCKQLEPKI 82
A L + + Y I + T + Y P C C++ K+
Sbjct: 122 AKLNAIFNEIPADYAI-----ELPSTNAANKDKILYIVSDPMCPHCQKELTKL 169
>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural
genomics, protein S initiative, midwest center for
structural genomics; HET: MSE; 1.30A {Bacteroides
fragilis}
Length = 142
Score = 26.6 bits (59), Expect = 2.5
Identities = 8/91 (8%), Positives = 23/91 (25%), Gaps = 29/91 (31%)
Query: 57 IRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTS-----GVEFVKINVEN---------- 101
L + P C C ++ + ++ + I +
Sbjct: 29 FPA-EYTLLFINNPGCHACAEMIEGLKASPVINGFTAAKKLKVLSIYPDEELDEWKKHRN 87
Query: 102 -------------GGGEIAREFEVQAVPTVI 119
+ ++++A+PT+
Sbjct: 88 DFAKEWTNGYDKELVIKNKNLYDLRAIPTLY 118
>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A
{Synechocystis SP}
Length = 99
Score = 26.1 bits (58), Expect = 2.6
Identities = 9/43 (20%), Positives = 15/43 (34%), Gaps = 13/43 (30%)
Query: 69 KPSCGFCKQ----LEPKISTVSETTSGVEFVKINVENGGGEIA 107
+C FC + L+ K GVEF + ++
Sbjct: 23 WSTCPFCMRALALLKRK---------GVEFQEYCIDGDNEARE 56
>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A
{Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 458
Score = 27.1 bits (61), Expect = 2.6
Identities = 10/59 (16%), Positives = 21/59 (35%), Gaps = 4/59 (6%)
Query: 69 KPSCGFCKQLEPKISTVSETTSGVEFV----KINVENGGGEIAREFEVQAVPTVIGFRN 123
P + + K V T+GV + + V +G ++ +V+ I +
Sbjct: 79 SPRLDIGQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAKVLDGKQVEVDGQRIQCEH 137
>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET:
GSH; 2.10A {Populus tremula x populus tremuloides} PDB:
1z7p_A 1z7r_A
Length = 116
Score = 26.1 bits (58), Expect = 2.7
Identities = 12/74 (16%), Positives = 27/74 (36%), Gaps = 16/74 (21%)
Query: 42 MAYLIIEKIDDFKQTIRGRNPVLAYFFKPSCGFCKQ----LEPKISTVSETTSGVEF--V 95
M+ ++ + + PV+ F K CG+C + L G + V
Sbjct: 1 MSKQELDAALKKAKELASSAPVVV-FSKTYCGYCNRVKQLLTQV---------GASYKVV 50
Query: 96 KINVENGGGEIARE 109
+++ + G ++
Sbjct: 51 ELDELSDGSQLQSA 64
>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain
swapping, electron transport; 2.69A {Corynebacterium
ammoniagenes} SCOP: c.47.1.1
Length = 75
Score = 25.7 bits (57), Expect = 2.8
Identities = 10/83 (12%), Positives = 22/83 (26%), Gaps = 23/83 (27%)
Query: 69 KPSCGFCKQ----LEPKISTVSETTSGVEFVKINVENGGG--EIAREFEVQAVPTV-IGF 121
KP+C C L+ G+ + +++ + P V +
Sbjct: 8 KPACVQCTATKKALDRA---------GLAYNTVDISLDDEARDYVMALGYVQAPVVEVD- 57
Query: 122 RNGDPVDTVVGNADQDVIQTLVS 144
+ I+ L +
Sbjct: 58 ------GEHWSGFRPERIKQLQA 74
>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin,
redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1
Length = 81
Score = 25.7 bits (57), Expect = 2.9
Identities = 15/67 (22%), Positives = 22/67 (32%), Gaps = 22/67 (32%)
Query: 69 KPSCGFCKQ----LEPKISTVSETTSGVEFVKINVENGGGEIA--REFEVQAVPTVI--- 119
+ C C +E + G +F INV+ R + +P VI
Sbjct: 8 RNDCVQCHATKRAMENR---------GFDFEMINVDRVPEAAEALRAQGFRQLPVVIAGD 58
Query: 120 ----GFR 122
GFR
Sbjct: 59 LSWSGFR 65
>3l9s_A Thiol:disulfide interchange protein; thioredoxin-fold, DSBA,
thiol-disulfide oxidoreductase, DISU bond, redox-active
center; 1.58A {Salmonella enterica subsp} PDB: 1a23_A
1a24_A 1a2j_A 1a2l_A 1a2m_A 1dsb_A 1fvk_A 3dks_A 1bq7_A
1fvj_A 1acv_A 1u3a_A* 1ti1_A* 2hi7_A* 2leg_A* 2zup_A*
3e9j_B* 1ac1_A 2b6m_A 2b3s_A
Length = 191
Score = 26.4 bits (57), Expect = 3.1
Identities = 7/26 (26%), Positives = 9/26 (34%)
Query: 62 PVLAYFFKPSCGFCKQLEPKISTVSE 87
P + FF C C Q E +
Sbjct: 23 PQVLEFFSFYCPHCYQFEEVLHVSDN 48
>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT
structure initiative, northeast structural genomics
consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}
Length = 369
Score = 26.3 bits (59), Expect = 3.8
Identities = 12/76 (15%), Positives = 26/76 (34%), Gaps = 14/76 (18%)
Query: 76 KQLEPKISTV----SETTSGVEFVKI------NVENGGGEIAREFEVQAVPTVIGFRNGD 125
++LEP + S +T V+ + + E+ G ++ + A R
Sbjct: 127 RRLEPALHCTAALVSPSTGIVDSHALMLAYQGDAESDGAQLVFHTPLIA----GRVRPEG 182
Query: 126 PVDTVVGNADQDVIQT 141
+ G A+ +
Sbjct: 183 GFELDFGGAEPMTLSC 198
>1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Length = 100
Score = 25.4 bits (56), Expect = 4.4
Identities = 9/39 (23%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 62 PVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVE 100
PVL F K C C + + + + ++ V I +
Sbjct: 17 PVLTLFTKAPCPLCDEAKEVLQPYKDRF-ILQEVDITLP 54
>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold,
structural genomics, PSI-2, protein structu initiative;
2.00A {Bacteroides fragilis}
Length = 142
Score = 25.8 bits (57), Expect = 5.0
Identities = 10/91 (10%), Positives = 28/91 (30%), Gaps = 29/91 (31%)
Query: 57 IRGRNPVLAYFFKPSCGFCKQLEPKISTVSET-----TSGVEFVKINVEN---------- 101
++ + +F+ P C C++ E + + + + I +
Sbjct: 25 LKA-QYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVENGTLRVLAIYPDENREEWATKAV 83
Query: 102 -------------GGGEIAREFEVQAVPTVI 119
G + ++++A PT+
Sbjct: 84 YMPQGWIVGWNKAGDIRTRQLYDIRATPTIY 114
>3kzq_A Putative uncharacterized protein VP2116; protein with unknown
function, STRU genomics, PSI, MCSG, protein structure
initiative; HET: PG6; 2.10A {Vibrio parahaemolyticus}
Length = 208
Score = 26.1 bits (57), Expect = 5.1
Identities = 5/46 (10%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Query: 105 EIAREFEVQAVPTVIGFRNGDPVDTVVGNAD-QDVIQTLVSKLSQK 149
+A+ V + P+++ N V + ++ + ++ +
Sbjct: 160 SLAKSLGVNSYPSLVLQINDAYFPIEVDYLSTEPTLKLIRERIIEN 205
>3f9u_A Putative exported cytochrome C biogenesis-related; exported
cytochrome C biogenesis-related protein, bacteroide
fragilis; 2.20A {Bacteroides fragilis nctc 9343}
Length = 172
Score = 25.8 bits (56), Expect = 5.2
Identities = 15/68 (22%), Positives = 26/68 (38%), Gaps = 7/68 (10%)
Query: 16 NSGGKLSARAALPPRAHLPNLIQAVQMAYLIIEKIDDFKQTI----RGRNPVLAYFFKPS 71
N+G L A +A P + + K DD+ + + PV+ F
Sbjct: 2 NAGAPLKAVSAFAPPMKTQDFNLYTNE---VHAKFDDYDLGMEYARQHNKPVMLDFTGYG 58
Query: 72 CGFCKQLE 79
C C+++E
Sbjct: 59 CVNCRKME 66
>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G
midwest center for structural genomics, protein
structure initiative; 1.70A {Aeropyrum pernix}
Length = 165
Score = 25.9 bits (57), Expect = 5.2
Identities = 9/59 (15%), Positives = 18/59 (30%), Gaps = 1/59 (1%)
Query: 58 RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVP 116
G V+ +F C C + + ++E + + I+ A P
Sbjct: 36 GGD-VVILWFMAAWCPSCVYMADLLDRLTEKYREISVIAIDFWTAEALKALGLNKPGYP 93
>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia
fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A
1oc9_B 1fg4_A 1oc9_A
Length = 144
Score = 25.5 bits (56), Expect = 6.4
Identities = 12/83 (14%), Positives = 26/83 (31%), Gaps = 26/83 (31%)
Query: 63 VLAYFFKPSCGFCKQLEPKISTVSET---TSGVEFVKINVEN------------------ 101
V YF C + P++ + E + I+ +
Sbjct: 31 VFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLALP 90
Query: 102 -----GGGEIAREFEVQAVPTVI 119
G + F+V+++PT++
Sbjct: 91 FEDRKGMEFLTTGFDVKSIPTLV 113
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.135 0.388
Gapped
Lambda K H
0.267 0.0782 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,254,631
Number of extensions: 129344
Number of successful extensions: 557
Number of sequences better than 10.0: 1
Number of HSP's gapped: 454
Number of HSP's successfully gapped: 184
Length of query: 149
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 64
Effective length of database: 4,328,508
Effective search space: 277024512
Effective search space used: 277024512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.1 bits)