RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5679
(149 letters)
>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 217
Score = 63.5 bits (154), Expect = 1e-13
Identities = 17/103 (16%), Positives = 40/103 (38%), Gaps = 5/103 (4%)
Query: 47 IEKIDDFKQTI---RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGG 103
+E + F +TI + ++ ++ C L + ++ V+F KI N
Sbjct: 104 LETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEYPMVKFCKIRASNT- 162
Query: 104 GEIAREFEVQAVPTVIGFRNGDPVDTVVGNADQDVIQTLVSKL 146
F +PT++ ++ G+ + + A+Q + +
Sbjct: 163 -GAGDRFSSDVLPTLLVYKGGELISNFISVAEQFAEDFFAADV 204
>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius,
formerly Bacillus acidocaldarius [TaxId: 405212]}
Length = 105
Score = 61.0 bits (147), Expect = 1e-13
Identities = 28/99 (28%), Positives = 55/99 (55%), Gaps = 2/99 (2%)
Query: 51 DDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENGGGEIARE 109
+F+Q I+G PVL F+ CG C+ + P + +E + V K+NV+ E +
Sbjct: 8 ANFQQAIQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENP-ETTSQ 66
Query: 110 FEVQAVPTVIGFRNGDPVDTVVGNADQDVIQTLVSKLSQ 148
F + ++PT+I F+ G+PV ++G ++ ++ ++ + Q
Sbjct: 67 FGIMSIPTLILFKGGEPVKQLIGYQPKEQLEAQLADVLQ 105
>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 107
Score = 54.4 bits (130), Expect = 4e-11
Identities = 23/106 (21%), Positives = 42/106 (39%), Gaps = 4/106 (3%)
Query: 42 MAYLIIEKIDDFKQTIR--GRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINV 99
+ + DF+ + G + F CG C ++ P S++S F++++V
Sbjct: 1 VGVKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDV 60
Query: 100 ENGGGEIAREFEVQAVPTVIGFRNGDPVDTVVGNADQDVIQTLVSK 145
A + A PT FRN +D G AD ++ + +
Sbjct: 61 HQCQ-GTAATNNISATPTFQFFRNKVRIDQYQG-ADAVGLEEKIKQ 104
>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea),
thioredoxin F [TaxId: 3562]}
Length = 112
Score = 54.4 bits (130), Expect = 5e-11
Identities = 25/99 (25%), Positives = 44/99 (44%), Gaps = 2/99 (2%)
Query: 51 DDFKQTIR--GRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAR 108
D F ++ G PV+ F CG CK + PK ++E V F+K++ +A+
Sbjct: 14 DTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAK 73
Query: 109 EFEVQAVPTVIGFRNGDPVDTVVGNADQDVIQTLVSKLS 147
E ++ VPT + V V G +++ + + S
Sbjct: 74 ELGIRVVPTFKILKENSVVGEVTGAKYDKLLEAIQAARS 112
>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 105
Score = 54.0 bits (129), Expect = 6e-11
Identities = 29/102 (28%), Positives = 56/102 (54%), Gaps = 4/102 (3%)
Query: 47 IEKIDDFKQTIR--GRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGG 104
IE F++ + G V+ F CG CK ++P ++SE S V F++++V++
Sbjct: 5 IESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQ- 63
Query: 105 EIAREFEVQAVPTVIGFRNGDPVDTVVGNADQDVIQTLVSKL 146
++A E EV+ +PT F+ G V G A+++ ++ +++L
Sbjct: 64 DVASECEVKCMPTFQFFKKGQKVGEFSG-ANKEKLEATINEL 104
>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium
falciparum) [TaxId: 5833]}
Length = 103
Score = 51.7 bits (123), Expect = 4e-10
Identities = 28/102 (27%), Positives = 54/102 (52%), Gaps = 2/102 (1%)
Query: 46 IIEKIDDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGE 105
I+ +F I V+ FF CG CK++ P S+T + + F+K++V+ E
Sbjct: 4 IVTSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDVDEVS-E 62
Query: 106 IAREFEVQAVPTVIGFRNGDPVDTVVGNADQDVIQTLVSKLS 147
+ + + ++PT ++NG VDT++G A+ ++ L+ K +
Sbjct: 63 VTEKENITSMPTFKVYKNGSSVDTLLG-ANDSALKQLIEKYA 103
>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId:
1167]}
Length = 108
Score = 51.0 bits (121), Expect = 9e-10
Identities = 20/97 (20%), Positives = 42/97 (43%), Gaps = 1/97 (1%)
Query: 51 DDFKQTIRGRN-PVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIARE 109
+F+ + PVL YF+ CG C+ + P I+ + T S V + ++
Sbjct: 10 AEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNPTTVKK 69
Query: 110 FEVQAVPTVIGFRNGDPVDTVVGNADQDVIQTLVSKL 146
++V+ VP + + +D+ G +D + + +
Sbjct: 70 YKVEGVPALRLVKGEQILDSTEGVISKDKLLSFLDTH 106
>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii
[TaxId: 3055]}
Length = 107
Score = 49.9 bits (118), Expect = 2e-09
Identities = 28/107 (26%), Positives = 53/107 (49%), Gaps = 4/107 (3%)
Query: 42 MAYLIIEKIDDFKQTIRGRN-PVLAYFFKPSCGFCKQLEPKISTV-SETTSGVEFVKINV 99
M + D FK + + PVL F+ P CG C+ + P + + E ++ VK+N
Sbjct: 1 MEAGAVND-DTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNT 59
Query: 100 ENGGGEIAREFEVQAVPTVIGFRNGDPVDTVVGNADQDVIQTLVSKL 146
+ +A E+ ++++PT++ F+ G +T++G + I V K
Sbjct: 60 DE-SPNVASEYGIRSIPTIMVFKGGKKCETIIGAVPKATIVQTVEKY 105
>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus
tremula), thioredoxin H [TaxId: 113636]}
Length = 113
Score = 49.4 bits (117), Expect = 3e-09
Identities = 28/97 (28%), Positives = 52/97 (53%), Gaps = 2/97 (2%)
Query: 51 DDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREF 110
+ F++ + ++ F C CK + P + +++ V F+K++V+ E+
Sbjct: 17 EHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFPNVTFLKVDVDELKAVA-EEW 75
Query: 111 EVQAVPTVIGFRNGDPVDTVVGNADQDVIQTLVSKLS 147
V+A+PT I ++G VD VG AD+D + TLV+K +
Sbjct: 76 NVEAMPTFIFLKDGKLVDKTVG-ADKDGLPTLVAKHA 111
>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId:
5691]}
Length = 113
Score = 48.7 bits (115), Expect = 7e-09
Identities = 21/117 (17%), Positives = 44/117 (37%), Gaps = 10/117 (8%)
Query: 30 RAHLPNLIQAVQMAYLIIEKIDDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETT 89
RA P+++ + ++ F+ + +A+F CG CK +
Sbjct: 4 RARYPSVVD--------VYSVEQFRNIMSEDILTVAWFTAVWCGPCKT-IERPMEKIAYE 54
Query: 90 SGVEFVKINVENGGGEIAREFEVQAVPTVIGFRNGDPVDTVVGNADQDVIQTLVSKL 146
+ EI + V +PT I R+G + V+G A+ +++ + +
Sbjct: 55 FPTVKFAKVDADNNSEIVSKCRVLQLPTFIIARSGKMLGHVIG-ANPGMLRQKLRDI 110
>d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit
fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 122
Score = 48.5 bits (115), Expect = 7e-09
Identities = 12/107 (11%), Positives = 33/107 (30%), Gaps = 8/107 (7%)
Query: 51 DDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKI--STVSETTSGVEFVKINVENGGGEIAR 108
F++T+ + F S K + + T + + V++ G +
Sbjct: 10 LSFEKTVERFPYSVVKFDIASPYGEKHEAFTAFSKSAHKATKDLLIATVGVKDYGELENK 69
Query: 109 E------FEVQAVPTVIGFRNGDPVDTVVGNADQDVIQTLVSKLSQK 149
+ + P++ F+ + + + L + +S
Sbjct: 70 ALGDRYKVDDKNFPSIFLFKGNADEYVQLPSHVDVTLDNLKAFVSAN 116
>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]}
Length = 108
Score = 47.5 bits (112), Expect = 1e-08
Identities = 21/98 (21%), Positives = 46/98 (46%), Gaps = 3/98 (3%)
Query: 51 DDFKQTIRGRN-PVLAYFFKPSCGFCKQLEPKISTVS-ETTSGVEFVKINVENGGGEIAR 108
D F + + +L F+ CG CK + P + ++ E + K+N++ A
Sbjct: 10 DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP-GTAP 68
Query: 109 EFEVQAVPTVIGFRNGDPVDTVVGNADQDVIQTLVSKL 146
++ ++ +PT++ F+NG+ T VG + ++ +
Sbjct: 69 KYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDAN 106
>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii
[TaxId: 3055]}
Length = 112
Score = 47.1 bits (111), Expect = 2e-08
Identities = 24/97 (24%), Positives = 42/97 (43%), Gaps = 1/97 (1%)
Query: 51 DDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREF 110
+ P++ F CG CK + P T+S +G + +A
Sbjct: 15 AQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAEAA 74
Query: 111 EVQAVPTVIGFRNGDPVDTVVGNADQDVIQTLVSKLS 147
+ A+PT +++G D +VG A QD ++ LV+K +
Sbjct: 75 GITAMPTFHVYKDGVKADDLVG-ASQDKLKALVAKHA 110
>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein
Bta {Streptococcus pneumoniae [TaxId: 1313]}
Length = 115
Score = 46.8 bits (110), Expect = 4e-08
Identities = 11/107 (10%), Positives = 34/107 (31%), Gaps = 4/107 (3%)
Query: 42 MAYLIIEKIDDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVEN 101
+ L + + ++ + + + + +C +C++ +S V T + + E
Sbjct: 8 IKDLEVTTVVRAQEALDKKETATFFIGRKTCPYCRKFAGTLSGVVAETKAHIYFINSEEP 67
Query: 102 GGGEIARE----FEVQAVPTVIGFRNGDPVDTVVGNADQDVIQTLVS 144
+ + + VP + +G + I+
Sbjct: 68 SQLNDLQAFRSRYGIPTVPGFVHITDGQINVRCDSSMSAQEIKDFAG 114
>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo
sapiens) [TaxId: 9606]}
Length = 120
Score = 44.1 bits (103), Expect = 3e-07
Identities = 21/103 (20%), Positives = 40/103 (38%), Gaps = 6/103 (5%)
Query: 51 DDFKQTIRGRNPVLAYFFKPSCGFCKQ----LEPKISTVSETTSGVEFVKINVENGGGEI 106
+F + + +L F+ P CG CK + S + K++
Sbjct: 15 SNFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLA 74
Query: 107 AREFEVQAVPTVIGFRNGDPVDTVVGNADQDVIQTLVSKLSQK 149
+ + V+ PT+ FRNGD A ++ +V+ L ++
Sbjct: 75 QQ-YGVRGYPTIKFFRNGDTASPKEYTAGREA-DDIVNWLKKR 115
>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE
{Escherichia coli [TaxId: 562]}
Length = 132
Score = 44.3 bits (104), Expect = 4e-07
Identities = 15/105 (14%), Positives = 27/105 (25%), Gaps = 4/105 (3%)
Query: 47 IEKIDDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVE--FVKINVENGGG 104
++DD+ VL I + ++E
Sbjct: 24 ESRLDDWLTQAPDG-VVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQ-SE 81
Query: 105 EIAREFEVQAVPTVIGFRNGDPVDTVVGNADQDVIQTLVSKLSQK 149
I F V P + F G+ + G + L+ L +
Sbjct: 82 AIGDRFGVFRFPATLVFTGGNYRGVLNGIHPWAELINLMRGLVEP 126
>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 107
Score = 43.4 bits (101), Expect = 6e-07
Identities = 23/104 (22%), Positives = 40/104 (38%), Gaps = 7/104 (6%)
Query: 51 DDFKQTIR--GRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAR 108
D+ KQ IR ++ + F P+C +C + + KI +
Sbjct: 4 DETKQAIRNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYP 63
Query: 109 EF----EVQAVPTVIGFRNGDPVDTVVGNAD-QDVIQTLVSKLS 147
E+ V AVP ++ NG+ G + ++ L+S LS
Sbjct: 64 EWADQYNVMAVPKIVIQVNGEDRVEFEGAYPEKMFLEKLLSALS 107
>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis
thaliana) [TaxId: 3702]}
Length = 114
Score = 43.3 bits (101), Expect = 6e-07
Identities = 23/95 (24%), Positives = 51/95 (53%), Gaps = 2/95 (2%)
Query: 51 DDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREF 110
+ ++ + V+ F CG C+ + P + +++ V F+K++ + +A ++
Sbjct: 19 EQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVLFLKVDTDELK-SVASDW 77
Query: 111 EVQAVPTVIGFRNGDPVDTVVGNADQDVIQTLVSK 145
+QA+PT + + G +D VVG A +D +Q+ ++K
Sbjct: 78 AIQAMPTFMFLKEGKILDKVVG-AKKDELQSTIAK 111
>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo
sapiens) [TaxId: 9606]}
Length = 137
Score = 43.6 bits (102), Expect = 9e-07
Identities = 12/97 (12%), Positives = 32/97 (32%), Gaps = 2/97 (2%)
Query: 51 DDFKQTIRGRN--PVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAR 108
Q I V+ F C +++ + +++E + + + +
Sbjct: 11 WQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNK 70
Query: 109 EFEVQAVPTVIGFRNGDPVDTVVGNADQDVIQTLVSK 145
+E+ TV+ F + +G + + I +
Sbjct: 71 MYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWAMED 107
>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea),
thioredoxin M [TaxId: 3562]}
Length = 104
Score = 42.6 bits (99), Expect = 1e-06
Identities = 24/97 (24%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
Query: 51 DDFKQTI-RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIARE 109
+K+ + PV+ F+ P CG CK + P I +++ SG V + IA +
Sbjct: 7 SSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQ 66
Query: 110 FEVQAVPTVIGFRNGDPVDTVVGNADQDVIQTLVSKL 146
+ ++++PTV+ F+NG+ ++++G + + + K
Sbjct: 67 YNIRSIPTVLFFKNGERKESIIGAVPKSTLTDSIEKY 103
>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein
{Archaeon Methanobacterium thermoautotrophicum [TaxId:
145262]}
Length = 85
Score = 40.8 bits (95), Expect = 3e-06
Identities = 13/81 (16%), Positives = 26/81 (32%), Gaps = 4/81 (4%)
Query: 66 YFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTVIGFRNGD 125
F P+C +C + + V+ E A E+ + AVP +
Sbjct: 7 VFTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVDREKAIEYGLMAVPAIAINGVV- 65
Query: 126 PVDTVVGNADQDVIQTLVSKL 146
VG ++ + ++
Sbjct: 66 ---RFVGAPSREELFEAINDE 83
>d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 140
Score = 40.2 bits (93), Expect = 1e-05
Identities = 17/90 (18%), Positives = 36/90 (40%), Gaps = 2/90 (2%)
Query: 51 DDFKQTIRGRN-PVLAYFFKPSCGFCKQLEPKISTVS-ETTSGVEFVKINVENGGGEIAR 108
+ + + VL ++ P CG CK+L P ++ + V I + R
Sbjct: 20 KNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTENDVR 79
Query: 109 EFEVQAVPTVIGFRNGDPVDTVVGNADQDV 138
++ PT++ + G ++VV + +
Sbjct: 80 GVVIEGYPTIVLYPGGKKSESVVYQGSRSL 109
>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 85
Score = 39.2 bits (90), Expect = 1e-05
Identities = 14/83 (16%), Positives = 31/83 (37%), Gaps = 4/83 (4%)
Query: 63 VLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTVIGFR 122
+ F P C C + + V+ V+ + A E+ + AVPT++
Sbjct: 5 KIELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVMENPQKAMEYGIMAVPTIVING 64
Query: 123 NGDPVDTVVGNADQDVIQTLVSK 145
+ + +G ++ + + K
Sbjct: 65 DVE----FIGAPTKEALVEAIKK 83
>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus
cuniculus) [TaxId: 9986]}
Length = 124
Score = 39.8 bits (92), Expect = 2e-05
Identities = 10/106 (9%), Positives = 35/106 (33%), Gaps = 10/106 (9%)
Query: 51 DDFKQTIRGRNPVLAYFFKPSCG------FCKQLEPKISTVSE--TTSGVEFVKINVENG 102
++K + + + +P + E + ++ GV F ++ E
Sbjct: 19 KNYKNVFKKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEKD 78
Query: 103 GGEIAREFEVQAVPTVIGFRNGDPVDTVVGNADQDVIQTLVSKLSQ 148
++ + ++ F+ + ++ G D + + + +
Sbjct: 79 AAVA-KKLGLTEEDSIYVFKEDEVIEY-DGEFSADTLVEFLLDVLE 122
>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi
(Humicola insolens) [TaxId: 34413]}
Length = 116
Score = 39.0 bits (90), Expect = 2e-05
Identities = 22/101 (21%), Positives = 40/101 (39%), Gaps = 4/101 (3%)
Query: 51 DDFKQTIRGRN-PVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINV--ENGGGEIA 107
++ + + VL F+ P CG CK L PK + + EF V +
Sbjct: 10 KNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATAND 69
Query: 108 REFEVQAVPTVIGFRNGDPVDTVVGNADQDVIQTLVSKLSQ 148
E+Q PT+ + G V + + V + L+ +++
Sbjct: 70 VPDEIQGFPTIKLYPAGAKGQPVTYSGSRTV-EDLIKFIAE 109
>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 119
Score = 39.1 bits (90), Expect = 3e-05
Identities = 22/100 (22%), Positives = 44/100 (44%), Gaps = 2/100 (2%)
Query: 51 DDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEF-VKINVENGGGEIARE 109
D F + I+ + VLA FF P CG CK + P+ +ET + ++ E
Sbjct: 18 DSFNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTENQDLCME 77
Query: 110 FEVQAVPTVIGFRNGDPVDTVVGNADQDVIQTLVSKLSQK 149
+ P++ F+N D +++ + + +V + ++
Sbjct: 78 HNIPGFPSLKIFKNSDVNNSIDYEGPRTA-EAIVQFMIKQ 116
>d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV
{Bacillus subtilis [TaxId: 1423]}
Length = 143
Score = 38.8 bits (89), Expect = 5e-05
Identities = 17/122 (13%), Positives = 39/122 (31%), Gaps = 28/122 (22%)
Query: 53 FKQTIRGRNPVLAYFFKPSCGFCKQ-LEPKISTVSETTSGVEFVKINVENGG-------- 103
++ + G P L +F+ SC CK+ + + + V +++
Sbjct: 22 TREQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMPRSEDDLDPGKI 81
Query: 104 ------------------GEIAREFEVQAVPTVIGF-RNGDPVDTVVGNADQDVIQTLVS 144
+ FE + VP F + G G + +++ V+
Sbjct: 82 KETAAEHDITQPIFVDSDHALTDAFENEYVPAYYVFDKTGQLRHFQAGGSGMKMLEKRVN 141
Query: 145 KL 146
++
Sbjct: 142 RV 143
>d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29,
N-terminal domain {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 122
Score = 37.7 bits (87), Expect = 8e-05
Identities = 18/106 (16%), Positives = 31/106 (29%), Gaps = 8/106 (7%)
Query: 51 DDFKQTIRGRNPVLAYFFKPSCGFCKQ-----LEPKISTVSETTSG-VEFVKINV-ENGG 103
F + I VL F KQ L ++ + V N
Sbjct: 12 VTFYKVIPKSKFVLVKFDTQYPYGEKQDEFKRLAENSASSDDLLVAEVGISDYGDKLNME 71
Query: 104 GEIAREFEVQAVPTVIGFRNGDPVDTVVGNADQDVIQTLVSKLSQK 149
+ + ++ P FR+GD + V + V + L +
Sbjct: 72 LSEKYKLDKESYPVFYLFRDGDFENPVPYSGAVKV-GAIQRWLKGQ 116
>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 111
Score = 36.4 bits (83), Expect = 2e-04
Identities = 26/109 (23%), Positives = 48/109 (44%), Gaps = 4/109 (3%)
Query: 39 AVQMAYLIIEKIDDFKQTIR--GRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVK 96
A M Y + +K D + V+ FF CG CK + PK+ +S + V
Sbjct: 3 AAAMVYQVKDK-ADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVL 61
Query: 97 INVENGGGEIAREFEVQAVPTVIGFRNGDPVDTVVGNADQDVIQTLVSK 145
+ +IA E+ + ++PT + +NG V+ G A+ ++ ++
Sbjct: 62 KVDVDECEDIAMEYNISSMPTFVFLKNGVKVEEFAG-ANAKRLEDVIKA 109
>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein
C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]}
Length = 100
Score = 36.3 bits (83), Expect = 2e-04
Identities = 14/87 (16%), Positives = 31/87 (35%), Gaps = 7/87 (8%)
Query: 62 PVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTVIGF 121
PVL F K C C + + + + ++ V I + ++ +
Sbjct: 17 PVLTLFTKAPCPLCDEAKEVLQPYKD-RFILQEVDITLPE-NSTWYERYKFD---IPVFH 71
Query: 122 RNGDPVDTVVGNADQDVIQTLVSKLSQ 148
NG + ++ + ++ + KLS
Sbjct: 72 LNGQFL--MMHRVNTSKLEKQLRKLSG 96
>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit
F (AhpF), N-terminal domain {Salmonella typhimurium
[TaxId: 90371]}
Length = 96
Score = 35.1 bits (80), Expect = 6e-04
Identities = 17/101 (16%), Positives = 34/101 (33%), Gaps = 13/101 (12%)
Query: 46 IIEKIDDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGE 105
++E+I D ++ SC C + ++ ++ ++ I+
Sbjct: 6 LLEQIRDIDGDF-----EFETYYSLSCHNCPDVVQALNLMAVLNPRIKHTAIDGGT-FQN 59
Query: 106 IAREFEVQAVPTVIGFRNGDPVDTVVGNADQDVIQTLVSKL 146
E V VP V F NG + +V+K+
Sbjct: 60 EITERNVMGVPAV--FVNGKEFGQGRMTLTE-----IVAKV 93
>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase
MsrA/MsrB, N-terminal domain {Neisseria meningitidis
serogroup A [TaxId: 65699]}
Length = 143
Score = 34.1 bits (77), Expect = 0.002
Identities = 17/120 (14%), Positives = 34/120 (28%), Gaps = 31/120 (25%)
Query: 58 RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKI-------------------- 97
+ + P L F+ C C + ++ I
Sbjct: 22 KDK-PTLIKFWASWCPLCLSELGQTEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWY 80
Query: 98 ---------NVENGGGEIAREFEVQAVPTVIGF-RNGDPVDTVVGNADQDVIQTLVSKLS 147
V + GG IA+ + P+ ++GD V G+ ++ L+ +
Sbjct: 81 AGLNYPKLPVVTDNGGTIAQSLNISVYPSWALIGKDGDVQRIVKGSINEAQALALIRDPN 140
>d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 135
Score = 32.5 bits (73), Expect = 0.007
Identities = 17/86 (19%), Positives = 33/86 (38%), Gaps = 4/86 (4%)
Query: 51 DDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKI---STVSETTSGVEFVKINVENGGGEIA 107
D K+ P++ K CG CK L+PK + +SE + V + E +
Sbjct: 16 DGKKEAAASGLPLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEPKDED 75
Query: 108 REFEVQAVPTVIGFR-NGDPVDTVVG 132
+ +P ++ +G ++
Sbjct: 76 FSPDGGYIPRILFLDPSGKVHPEIIN 101
>d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY,
DsbE) {Escherichia coli [TaxId: 562]}
Length = 136
Score = 31.9 bits (71), Expect = 0.011
Identities = 21/130 (16%), Positives = 42/130 (32%), Gaps = 28/130 (21%)
Query: 47 IEKIDDFKQTI------RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKIN-- 98
+E +D+ Q +G+ PVL + C + ++ +S V +
Sbjct: 2 LESLDNPGQFYQADVLTQGK-PVLLNVWATWCPTSRAEHQYLNQLSAQGIRVVGMNYKDD 60
Query: 99 ------------------VENGGGEIAREFEVQAVP-TVIGFRNGDPVDTVVGNADQDVI 139
+ +G G + + V P T + NG G+ + V
Sbjct: 61 RQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGAPETFLIDGNGIIRYRHAGDLNPRVW 120
Query: 140 QTLVSKLSQK 149
+ + L +K
Sbjct: 121 EEEIKPLWEK 130
>d1t3ba1 c.47.1.9 (A:61-210) Disulfide bond isomerase, DsbC,
C-terminal domain {Haemophilus influenzae [TaxId: 727]}
Length = 150
Score = 31.7 bits (71), Expect = 0.019
Identities = 10/71 (14%), Positives = 30/71 (42%), Gaps = 5/71 (7%)
Query: 45 LIIEKIDDFKQ---TIRGRNP--VLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINV 99
++++K++ +K +N V+ F +C +C L ++ ++ V ++
Sbjct: 6 ILVDKLNSYKDEMIVYPAKNEKHVVTVFMDITCHYCHLLHQQLKEYNDLGITVRYLAFPR 65
Query: 100 ENGGGEIAREF 110
+ A++
Sbjct: 66 AGMNNQTAKQM 76
>d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 134
Score = 31.2 bits (69), Expect = 0.023
Identities = 12/44 (27%), Positives = 16/44 (36%)
Query: 104 GEIAREFEVQAVPTVIGFRNGDPVDTVVGNADQDVIQTLVSKLS 147
G + F V P VD V G QD + V+ L+
Sbjct: 91 GSVWANFGVTQQPAYAFVDPHGNVDVVRGRMSQDELTRRVTALT 134
>d1fvka_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA)
{Escherichia coli [TaxId: 562]}
Length = 188
Score = 31.1 bits (69), Expect = 0.038
Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 4/52 (7%)
Query: 62 PVLAYFFKPSCGFCKQLEPKISTVSE----TTSGVEFVKINVENGGGEIARE 109
P + FF C C Q E + GV+ K +V GG++ ++
Sbjct: 20 PQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYHVNFMGGDLGKD 71
>d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 166
Score = 30.3 bits (67), Expect = 0.049
Identities = 8/78 (10%), Positives = 20/78 (25%), Gaps = 2/78 (2%)
Query: 23 ARAALPPRAHLPNLIQAVQMAYLIIEKIDDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKI 82
+ + Q ++ L + ++ R L + C C+ +
Sbjct: 19 GHGLATEQGAVARFRQKLESNGLPSALTERLQRIER--RYRLLVAGEMWCPDCQINLAAL 76
Query: 83 STVSETTSGVEFVKINVE 100
+E I+
Sbjct: 77 DFAQRLQPNIELAIISKG 94
>d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin
{Corynebacterium ammoniagenes [TaxId: 1697]}
Length = 74
Score = 27.7 bits (61), Expect = 0.18
Identities = 11/78 (14%), Positives = 24/78 (30%), Gaps = 9/78 (11%)
Query: 67 FFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTVIGFRNGDP 126
+ KP+C C + V I++++ + P V +G+
Sbjct: 6 YTKPACVQCTAT---KKALDRAGLAYNTVDISLDDEARDYVMALGYVQAPVV--EVDGE- 59
Query: 127 VDTVVGNADQDVIQTLVS 144
+ I+ L +
Sbjct: 60 ---HWSGFRPERIKQLQA 74
>d1egoa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase)
{Escherichia coli [TaxId: 562]}
Length = 85
Score = 27.7 bits (61), Expect = 0.23
Identities = 6/64 (9%), Positives = 22/64 (34%), Gaps = 3/64 (4%)
Query: 67 FFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGG---EIAREFEVQAVPTVIGFRN 123
F + C +C + + +S ++ +++ G ++ ++ F +
Sbjct: 6 FGRSGCPYCVRAKDLAEKLSNERDDFQYQYVDIRAEGITKEDLQQKAGKPVETVPQIFVD 65
Query: 124 GDPV 127
+
Sbjct: 66 QQHI 69
>d1un2a_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA)
{Escherichia coli [TaxId: 562]}
Length = 195
Score = 28.4 bits (63), Expect = 0.24
Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 4/52 (7%)
Query: 62 PVLAYFFKPSCGFCKQLEPKISTVSE----TTSGVEFVKINVENGGGEIARE 109
P + FF C C Q E + GV+ K +V GG++ ++
Sbjct: 115 PQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYHVNFMGGDLGKD 166
>d1eeja1 c.47.1.9 (A:61-216) Disulfide bond isomerase, DsbC,
C-terminal domain {Escherichia coli [TaxId: 562]}
Length = 156
Score = 27.9 bits (61), Expect = 0.35
Identities = 7/69 (10%), Positives = 30/69 (43%), Gaps = 5/69 (7%)
Query: 45 LIIEKIDDFKQTI-----RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINV 99
+++++++ ++ + V+ F +CG+C +L +++ + V ++
Sbjct: 6 MLLKQLNALEKEMIVYKAPQEKHVITVFTDITCGYCHKLHEQMADYNALGITVRYLAFPR 65
Query: 100 ENGGGEIAR 108
+ + +
Sbjct: 66 QGLDSDAEK 74
>d1knga_ c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY, DsbE)
{Bradyrhizobium japonicum [TaxId: 375]}
Length = 144
Score = 26.6 bits (57), Expect = 0.83
Identities = 12/59 (20%), Positives = 23/59 (38%)
Query: 91 GVEFVKINVENGGGEIAREFEVQAVPTVIGFRNGDPVDTVVGNADQDVIQTLVSKLSQK 149
G F ++ V+ G T + R G V +VG D +++++ +K
Sbjct: 84 GNPFGRVGVDANGRASIEWGVYGVPETFVVGREGTIVYKLVGPITPDNLRSVLLPQMEK 142
>d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 147
Score = 25.5 bits (55), Expect = 2.5
Identities = 9/93 (9%), Positives = 24/93 (25%), Gaps = 7/93 (7%)
Query: 62 PVLAYFFKPSCGFCKQLEPKISTVSETTS--GVEFVKINVENGGGEIAREFEVQAVPT-- 117
++ C+ L + + + F+ V + E R + +
Sbjct: 44 WLMINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQVYHDSEEGQRYIQFYKLGDFP 103
Query: 118 ---VIGFRNGDPVDTVVGNADQDVIQTLVSKLS 147
++ R G + + + L
Sbjct: 104 YVSILDPRTGQKLVEWHQLDVSSFLDQVTGFLG 136
>d1dnva_ b.121.5.3 (A:) Densovirus capsid protein {Galleria
mellonella densovirus [TaxId: 37138]}
Length = 415
Score = 25.3 bits (55), Expect = 3.8
Identities = 10/43 (23%), Positives = 14/43 (32%)
Query: 62 PVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGG 104
++ +KP G K T G V N+ N G
Sbjct: 228 CLIDVTYKPKMGLIKSPLNYKIIGQPTVKGTISVGDNLVNMRG 270
>d1z6ma1 c.47.1.13 (A:1-172) Hypothetical protein EF0770
{Enterococcus faecalis [TaxId: 1351]}
Length = 172
Score = 24.2 bits (51), Expect = 7.4
Identities = 3/16 (18%), Positives = 7/16 (43%)
Query: 67 FFKPSCGFCKQLEPKI 82
F C +C++ +
Sbjct: 31 FINVRCPYCRKWFEES 46
>d1ktea_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Pig
(Sus scrofa) [TaxId: 9823]}
Length = 105
Score = 23.5 bits (50), Expect = 7.4
Identities = 7/24 (29%), Positives = 13/24 (54%), Gaps = 2/24 (8%)
Query: 54 KQTIRGRNPVLAYFFKPSCGFCKQ 77
I+ V+ + KP+C FC++
Sbjct: 6 NSKIQ-PGKVVVFI-KPTCPFCRK 27
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.135 0.388
Gapped
Lambda K H
0.267 0.0496 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 538,305
Number of extensions: 23598
Number of successful extensions: 109
Number of sequences better than 10.0: 1
Number of HSP's gapped: 95
Number of HSP's successfully gapped: 50
Length of query: 149
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 72
Effective length of database: 1,350,386
Effective search space: 97227792
Effective search space used: 97227792
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.2 bits)