BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy568
(1614 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VKH|A Chain A, X-Ray Structure Of A Functional Full-Length Dynein Motor
Domain
pdb|3VKH|B Chain B, X-Ray Structure Of A Functional Full-Length Dynein Motor
Domain
Length = 3367
Score = 1984 bits (5141), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 935/1644 (56%), Positives = 1224/1644 (74%), Gaps = 60/1644 (3%)
Query: 1 MTGLKEKIKEVCREEFLVCGEGNEEGGPWMEKVLQLYQISNLNHGLMMVGPSGSGKSTAW 60
M L++KI+E+ ++ LV + W+EK+LQL+QI N+NHG+MMVGPSG GK+T+W
Sbjct: 870 MDQLRKKIQEIAKQRHLVTKQ------EWVEKILQLHQILNINHGVMMVGPSGGGKTTSW 923
Query: 61 KVLLKALERYEGVEGVAHIIDPKAISKEALYGVLDPNTREWTDGLFTHILRRIIDNVRGE 120
+V L+A+E+ + ++ AH++DPKAI+K+ L+G LD TREWTDGLFT LRRIIDNVRGE
Sbjct: 924 EVYLEAIEQVDNIKSEAHVMDPKAITKDQLFGSLDLTTREWTDGLFTATLRRIIDNVRGE 983
Query: 121 ISKRQWIIFDGDVDPEWVENLNSVLDDNKLLTLPNGERLSLPPNIRIMFEVQDLKYATLA 180
+KR WIIFDGDVDPEWVENLNS+LDDNKLLTLPNGERL+LP N+R+MFEVQDLKYATLA
Sbjct: 984 STKRHWIIFDGDVDPEWVENLNSLLDDNKLLTLPNGERLALPNNVRVMFEVQDLKYATLA 1043
Query: 181 TVSRCGMIWFSEDVLSTEMIFENYLSRLRN-------IAXXXXXXXXXXXXTVDATGKAP 233
T+SRCGM+WFSE++L+T+MIF+NYL L N T +P
Sbjct: 1044 TISRCGMVWFSEEILTTQMIFQNYLDTLSNEPFDPQEKEQQKRNENAQLQQQQQTTITSP 1103
Query: 234 ------------------DDVLSPALTLQQDVASILSTHFAPDGLVVRALDYAMQQEHIM 275
++ L +Q++ A+I+S +F P GLV + L+ A Q+ HIM
Sbjct: 1104 ILTSPPTTSSSSRSTTSTTSMIPAGLKVQKECAAIISQYFEPGGLVHKVLEDAGQRPHIM 1163
Query: 276 DFTRLRALGSLFSMLNQGVRNVLQYNHSHSDFPLSQDVVERYIPRILVYSLLWSFAGDGK 335
DFTRLR L S FS++N+ + NV++YN HSDFP+S + YI L+YSL+W G
Sbjct: 1164 DFTRLRVLNSFFSLMNRSIVNVIEYNQLHSDFPMSPENQSNYITNRLLYSLMWGLGGSMG 1223
Query: 336 LKMRSDFGNFLRSVTTITLPATSSDIVDFEVNIKNGEWVPWSNKVPQIEVETQKVAASDV 395
L R +F F++++ +PA + ++D+ V+I + W W NKVP +EVET KVA+ DV
Sbjct: 1224 LVERENFSKFIQTIAITPVPANTIPLLDYSVSIDDANWSLWKNKVPSVEVETHKVASPDV 1283
Query: 396 VVPTLDTVRHESLLYTWLAEHKPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATT 455
V+PT+DT RH +L+ WL+EH+PL+LCGPPGSGKTMTL S LRA PD EVVSLNFSSATT
Sbjct: 1284 VIPTVDTTRHVDVLHAWLSEHRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATT 1343
Query: 456 PELLLKTFDHYCEYRKTPNG-VILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQL 514
PELLLKTFDH+CEY++TP+G +L P QLGKWLV+FCDEINLP DKY TQRVI+F+RQ+
Sbjct: 1344 PELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLVVFCDEINLPSTDKYGTQRVITFIRQM 1403
Query: 515 IEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLRHVPVIYVDYPGETSLKQ 574
+E+ GF+R +D W+ L++IQ VGACNPPTD GR L+HRFLRH P++ VD+P +SL Q
Sbjct: 1404 VEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLRHAPILLVDFPSTSSLTQ 1463
Query: 575 IYGTFSRAMLRLIPPLRGYADALTNAMVELYLASQEKFTQDMQPHYVYSPREMTRWVRGI 634
IYGTF+RA+++L+P LR +AD LT+AMVE Y SQ++FT D+Q HY+YSPRE++RW R +
Sbjct: 1464 IYGTFNRALMKLLPNLRSFADNLTDAMVEFYSESQKRFTPDIQAHYIYSPRELSRWDRAL 1523
Query: 635 CEAIRPLESLTVEGLVRLWAHEALRLFQDRLVNDVERQWTNENIDAVAMKYFSNIDKEVL 694
EAI+ ++ T+EGLVRLWAHEALRLFQDRLV E++WT++ ID VA+K+F +++ + L
Sbjct: 1524 LEAIQTMDGCTLEGLVRLWAHEALRLFQDRLVETEEKEWTDKKIDEVALKHFPSVNLDAL 1583
Query: 695 ARPILYSNWLSKNYVPVGTTELREYVQARLKVFYEEELDVQLVLFDEVLDHVLRIDRIFR 754
RPILYSNWL+K+Y PV ++LREYV+ARLKVFYEEELDV LVLF+EVLDH+LRIDR+FR
Sbjct: 1584 KRPILYSNWLTKDYQPVNRSDLREYVKARLKVFYEEELDVPLVLFNEVLDHILRIDRVFR 1643
Query: 755 QPQGHLLLIGVSGAGKTTLSRFVAFMNGLSVFQIRAHNKYTGADFDEDLRTVLRRSGCKN 814
QPQGH LLIGVSG GK+ LSRFVA+MNGLS++ I+ +N Y +DFD+DLR +L+R+GCK
Sbjct: 1644 QPQGHALLIGVSGGGKSVLSRFVAWMNGLSIYTIKVNNNYKSSDFDDDLRMLLKRAGCKE 1703
Query: 815 EKIAFLLDESNVLESGFLERMNTLLANGEIPGLFEGDEYTTLMTQCKEGAQREGLMLDSN 874
EKI F+ DESNVLES FLERMNTLLA GE+PGLFEG+E+T LM CKE AQR GL+LDS
Sbjct: 1704 EKICFIFDESNVLESSFLERMNTLLAGGEVPGLFEGEEFTALMHACKETAQRNGLILDSE 1763
Query: 875 EELYKWFTQQVMKNLHVVFTMNPSSEGLKDRAATSPALFNRCVLNWFGDWSDTALYQVAK 934
EELYK+FT QV +NLHVVFTMNP+S +R+ATSPALFNRCVL+WFG+WS AL+QV
Sbjct: 1764 EELYKYFTSQVRRNLHVVFTMNPASPDFHNRSATSPALFNRCVLDWFGEWSPEALFQVGS 1823
Query: 935 EFTSKIDLDGPQNWKAPDFFPSV----CSLVSTTPSHRDSVINACVYVHQTLHKANARLS 990
EFT +DL+ PQ P F +L++ PSHRD+V+++ VY+HQT+ +AN RL
Sbjct: 1824 EFTRNLDLENPQYIAPPVFIQEAEIMGNNLMAIPPSHRDAVVSSLVYIHQTIGEANIRLL 1883
Query: 991 KRGSRTMAITPRHYLDFINHFVKLYREKCSELEEQQLHLNVGLGKIAETVEQVEEMQKSL 1050
KR R +TPRHYLDFIN V L EK +LEE+QLHLN+GL K+ +T QV+++Q SL
Sbjct: 1884 KRQGRQNYVTPRHYLDFINQVVLLINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSL 1943
Query: 1051 AVKSQELQSKNEAANLKLKEMIKDQQEAEKRKVQSQDIQAEIEKQTVEIAQKRVFVMEDL 1110
A K++EL KNE AN KLK+M++DQQ AE ++ ++++Q +++ + EIA ++V DL
Sbjct: 1944 AQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQKVKAYADL 2003
Query: 1111 AQVEPAVMDAQQAVKEIKKQQLVELRSMANPPSVVKLALESICLLLGENATDWKAIRAVV 1170
+ EPA+++AQ+AV IKK+ L E++S+ PP+ VKLA+E++CL+LG +W IR +
Sbjct: 2004 EKAEPAIIEAQEAVSTIKKKHLDEIKSLPKPPTPVKLAMEAVCLMLGGKKLEWADIRKKI 2063
Query: 1171 MRENFINSIVSNFNTEMITDEVREKMHSRYLSNPDYSYEKANRASMACGPMVKWAIAQIS 1230
M NFI SI++ +M+T ++RE + YL +P + YE NRAS ACGP+VKWA AQ
Sbjct: 2064 MEPNFITSIINYDTKKMMTPKIREAITKGYLEDPGFDYETVNRASKACGPLVKWATAQTY 2123
Query: 1231 YADMLKKVEPLRLELKSLEVQASENKAKGEETKDLITQLEKSIASYKDEYAQLIAQATAI 1290
Y+++L +++PLR E++ LE A+E K K +E IT LEKSIA+YK+EY
Sbjct: 2124 YSEILDRIKPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEY---------- 2173
Query: 1291 KTDLDNVQAKFYEYAQLIAQATAIKTDLDNVQAKVERSMALLKSLGIERERWEATSETFR 1350
A LI + IKT+ V+ KV+RS+ALL +L ER RWE SE F
Sbjct: 2174 --------------ATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFN 2219
Query: 1351 SQMATIIGDVLLSSAYLAYAGYFDQHYRQSLFSTWNSHLIAAGIQFRPEIALTEYLSSPD 1410
+QM+T++GDV+L+SA+LAY G+FDQ++R L W L + GI+F+ ++++ +LS P+
Sbjct: 2220 TQMSTVVGDVVLASAFLAYIGFFDQNFRTDLMRKWMIRLDSVGIKFKSDLSVPSFLSKPE 2279
Query: 1411 ERLRWQGNALPSDHLCTENAIMLRRFNRYPLIIDPSGQATEFILKEFESRKITKTSFLDD 1470
ERL W N+LPSD LC ENAIML+RFNRYPL+IDPSGQA EF++ ++ +KITKTSFLD
Sbjct: 2280 ERLNWHANSLPSDELCIENAIMLKRFNRYPLVIDPSGQAMEFLMNQYADKKITKTSFLDS 2339
Query: 1471 AFRKNLESALRFGNPLLVQDVENYDTILNPVLNRELRRTGGRVLITLGDQDIDISPTFVI 1530
+F KNLESALRFG PLLVQDVEN D +LNPVLN+E+R+ GGR+LI LGDQD+D SP+F+I
Sbjct: 2340 SFMKNLESALRFGCPLLVQDVENIDPVLNPVLNKEIRKKGGRILIRLGDQDVDFSPSFMI 2399
Query: 1531 FLSTRDPTVEFPPDICSRVTFVNFTVTRSSLQSQCLNRVLKAERPDIDTKRSDLLKLQGE 1590
FL TRDPT F PD+CSRVTFVNFTVT SSLQSQCL+ LK ERPD KRSDLLK+QGE
Sbjct: 2400 FLFTRDPTAHFTPDLCSRVTFVNFTVTPSSLQSQCLHEALKTERPDTHKKRSDLLKIQGE 2459
Query: 1591 FHLRLRHLEKSLLGALNESKGKLL 1614
F ++LR LEKSLL AL+++ G +L
Sbjct: 2460 FQVKLRILEKSLLNALSQASGNIL 2483
>pdb|3VKG|A Chain A, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein Motor
Domain
pdb|3VKG|B Chain B, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein Motor
Domain
Length = 3245
Score = 1422 bits (3682), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 667/1167 (57%), Positives = 871/1167 (74%), Gaps = 42/1167 (3%)
Query: 1 MTGLKEKIKEVCREEFLVCGEGNEEGGPWMEKVLQLYQISNLNHGLMMVGPSGSGKSTAW 60
M L++KI+E+ ++ LV + W+EK+LQL+QI N+NHG+MMVGPSG GK+T+W
Sbjct: 870 MDQLRKKIQEIAKQRHLVTKQ------EWVEKILQLHQILNINHGVMMVGPSGGGKTTSW 923
Query: 61 KVLLKALERYEGVEGVAHIIDPKAISKEALYGVLDPNTREWTDGLFTHILRRIIDNVRGE 120
+V L+A+E+ + ++ AH++DPKAI+K+ L+G LD TREWTDGLFT LRRIIDNVRGE
Sbjct: 924 EVYLEAIEQVDNIKSEAHVMDPKAITKDQLFGSLDLTTREWTDGLFTATLRRIIDNVRGE 983
Query: 121 ISKRQWIIFDGDVDPEWVENLNSVLDDNKLLTLPNGERLSLPPNIRIMFEVQDLKYATLA 180
+KR WIIFDGDVDPEWVENLNS+LDDNKLLTLPNGERL+LP N+R+MFEVQDLKYATLA
Sbjct: 984 STKRHWIIFDGDVDPEWVENLNSLLDDNKLLTLPNGERLALPNNVRVMFEVQDLKYATLA 1043
Query: 181 TVSRCGMIWFSEDVLSTEMIFENYLSRLRN-------IAXXXXXXXXXXXXTVDATGKAP 233
T+SRCGM+WFSE++L+T+MIF+NYL L N T +P
Sbjct: 1044 TISRCGMVWFSEEILTTQMIFQNYLDTLSNEPFDPQEKEQQKRNENAQLQQQQQTTITSP 1103
Query: 234 ------------------DDVLSPALTLQQDVASILSTHFAPDGLVVRALDYAMQQEHIM 275
++ L +Q++ A+I+S +F P GLV + L+ A Q+ HIM
Sbjct: 1104 ILTSPPTTSSSSRSTTSTTSMIPAGLKVQKECAAIISQYFEPGGLVHKVLEDAGQRPHIM 1163
Query: 276 DFTRLRALGSLFSMLNQGVRNVLQYNHSHSDFPLSQDVVERYIPRILVYSLLWSFAGDGK 335
DFTRLR L S FS++N+ + NV++YN HSDFP+S + YI L+YSL+W G
Sbjct: 1164 DFTRLRVLNSFFSLMNRSIVNVIEYNQLHSDFPMSPENQSNYITNRLLYSLMWGLGGSMG 1223
Query: 336 LKMRSDFGNFLRSVTTITLPATSSDIVDFEVNIKNGEWVPWSNKVPQIEVETQKVAASDV 395
L R +F F++++ +PA + ++D+ V+I + W W NKVP +EVET KVA+ DV
Sbjct: 1224 LVERENFSKFIQTIAITPVPANTIPLLDYSVSIDDANWSLWKNKVPSVEVETHKVASPDV 1283
Query: 396 VVPTLDTVRHESLLYTWLAEHKPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATT 455
V+PT+DT RH +L+ WL+EH+PL+LCGPPGSGKTMTL S LRA PD EVVSLNFSSATT
Sbjct: 1284 VIPTVDTTRHVDVLHAWLSEHRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATT 1343
Query: 456 PELLLKTFDHYCEYRKTPNG-VILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQL 514
PELLLKTFDH+CEY++TP+G +L P QLGKWLV+FCDEINLP DKY TQRVI+F+RQ+
Sbjct: 1344 PELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLVVFCDEINLPSTDKYGTQRVITFIRQM 1403
Query: 515 IEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLRHVPVIYVDYPGETSLKQ 574
+E+ GF+R +D W+ L++IQ VGACNPPTD GR L+HRFLRH P++ VD+P +SL Q
Sbjct: 1404 VEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLRHAPILLVDFPSTSSLTQ 1463
Query: 575 IYGTFSRAMLRLIPPLRGYADALTNAMVELYLASQEKFTQDMQPHYVYSPREMTRWVRGI 634
IYGTF+RA+++L+P LR +AD LT+AMVE Y SQ++FT D+Q HY+YSPRE++RW R +
Sbjct: 1464 IYGTFNRALMKLLPNLRSFADNLTDAMVEFYSESQKRFTPDIQAHYIYSPRELSRWDRAL 1523
Query: 635 CEAIRPLESLTVEGLVRLWAHEALRLFQDRLVNDVERQWTNENIDAVAMKYFSNIDKEVL 694
EAI+ ++ T+EGLVRLWAHEALRLFQDRLV E++WT++ ID VA+K+F +++ + L
Sbjct: 1524 LEAIQTMDGCTLEGLVRLWAHEALRLFQDRLVETEEKEWTDKKIDEVALKHFPSVNLDAL 1583
Query: 695 ARPILYSNWLSKNYVPVGTTELREYVQARLKVFYEEELDVQLVLFDEVLDHVLRIDRIFR 754
RPILYSNWL+K+Y PV ++LREYV+ARLKVFYEEELDV LVLF+EVLDH+LRIDR+FR
Sbjct: 1584 KRPILYSNWLTKDYQPVNRSDLREYVKARLKVFYEEELDVPLVLFNEVLDHILRIDRVFR 1643
Query: 755 QPQGHLLLIGVSGAGKTTLSRFVAFMNGLSVFQIRAHNKYTGADFDEDLRTVLRRSGCKN 814
QPQGH LLIGVSG GK+ LSRFVA+MNGLS++ I+ +N Y +DFD+DLR +L+R+GCK
Sbjct: 1644 QPQGHALLIGVSGGGKSVLSRFVAWMNGLSIYTIKVNNNYKSSDFDDDLRMLLKRAGCKE 1703
Query: 815 EKIAFLLDESNVLESGFLERMNTLLANGEIPGLFEGDEYTTLMTQCKEGAQREGLMLDSN 874
EKI F+ DESNVLES FLERMNTLLA GE+PGLFEG+E+T LM CKE AQR GL+LDS
Sbjct: 1704 EKICFIFDESNVLESSFLERMNTLLAGGEVPGLFEGEEFTALMHACKETAQRNGLILDSE 1763
Query: 875 EELYKWFTQQVMKNLHVVFTMNPSSEGLKDRAATSPALFNRCVLNWFGDWSDTALYQVAK 934
EELYK+FT QV +NLHVVFTMNP+S +R+ATSPALFNRCVL+WFG+WS AL+QV
Sbjct: 1764 EELYKYFTSQVRRNLHVVFTMNPASPDFHNRSATSPALFNRCVLDWFGEWSPEALFQVGS 1823
Query: 935 EFTSKIDLDGPQNWKAPDFFPSV----CSLVSTTPSHRDSVINACVYVHQTLHKANARLS 990
EFT +DL+ PQ P F +L++ PSHRD+V+++ VY+HQT+ +AN RL
Sbjct: 1824 EFTRNLDLENPQYIAPPVFIQEAEIMGNNLMAIPPSHRDAVVSSLVYIHQTIGEANIRLL 1883
Query: 991 KRGSRTMAITPRHYLDFINHFVKLYREKCSELEEQQLHLNVGLGKIAETVEQVEEMQKSL 1050
KR R +TPRHYLDFIN V L EK +LEE+QLHLN+GL K+ +T QV+++Q SL
Sbjct: 1884 KRQGRQNYVTPRHYLDFINQVVLLINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSL 1943
Query: 1051 AVKSQELQSKNEAANLKLKEMIKDQQEAEKRKVQSQDIQAEIEKQTVEIAQKRVFVMEDL 1110
A K++EL KNE AN KLK+M++DQQ AE ++ ++++Q +++ + EIA ++V DL
Sbjct: 1944 AQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQKVKAYADL 2003
Query: 1111 AQVEPA------VMDAQQAVKEIKKQQ 1131
+ EP V + A E+K +Q
Sbjct: 2004 EKAEPTGPLREEVEQLENAANELKLKQ 2030
Score = 445 bits (1145), Expect = e-125, Method: Compositional matrix adjust.
Identities = 223/388 (57%), Positives = 282/388 (72%), Gaps = 28/388 (7%)
Query: 1230 SYADMLKKVEP---LRLELKSLEVQASENKAKGEETKDLITQLEKSIASYKDEYAQLIAQ 1286
+YAD L+K EP LR E++ LE A+E K K +E IT LEKSIA+YK+EY
Sbjct: 1999 AYAD-LEKAEPTGPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEY------ 2051
Query: 1287 ATAIKTDLDNVQAKFYEYAQLIAQATAIKTDLDNVQAKVERSMALLKSLGIERERWEATS 1346
A LI + IKT+ V+ KV+RS+ALL +L ER RWE S
Sbjct: 2052 ------------------ATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQS 2093
Query: 1347 ETFRSQMATIIGDVLLSSAYLAYAGYFDQHYRQSLFSTWNSHLIAAGIQFRPEIALTEYL 1406
E F +QM+T++GDV+L+SA+LAY G+FDQ++R L W L + GI+F+ ++++ +L
Sbjct: 2094 ENFNTQMSTVVGDVVLASAFLAYIGFFDQNFRTDLMRKWMIRLDSVGIKFKSDLSVPSFL 2153
Query: 1407 SSPDERLRWQGNALPSDHLCTENAIMLRRFNRYPLIIDPSGQATEFILKEFESRKITKTS 1466
S P+ERL W N+LPSD LC ENAIML+RFNRYPL+IDPSGQA EF++ ++ +KITKTS
Sbjct: 2154 SKPEERLNWHANSLPSDELCIENAIMLKRFNRYPLVIDPSGQAMEFLMNQYADKKITKTS 2213
Query: 1467 FLDDAFRKNLESALRFGNPLLVQDVENYDTILNPVLNRELRRTGGRVLITLGDQDIDISP 1526
FLD +F KNLESALRFG PLLVQDVEN D +LNPVLN+E+R+ GGR+LI LGDQD+D SP
Sbjct: 2214 FLDSSFMKNLESALRFGCPLLVQDVENIDPVLNPVLNKEIRKKGGRILIRLGDQDVDFSP 2273
Query: 1527 TFVIFLSTRDPTVEFPPDICSRVTFVNFTVTRSSLQSQCLNRVLKAERPDIDTKRSDLLK 1586
+F+IFL TRDPT F PD+CSRVTFVNFTVT SSLQSQCL+ LK ERPD KRSDLLK
Sbjct: 2274 SFMIFLFTRDPTAHFTPDLCSRVTFVNFTVTPSSLQSQCLHEALKTERPDTHKKRSDLLK 2333
Query: 1587 LQGEFHLRLRHLEKSLLGALNESKGKLL 1614
+QGEF ++LR LEKSLL AL+++ G +L
Sbjct: 2334 IQGEFQVKLRILEKSLLNALSQASGNIL 2361
>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex
pdb|4AI6|B Chain B, Dynein Motor Domain - Adp Complex
pdb|4AKG|A Chain A, Dynein Motor Domain - Atp Complex
pdb|4AKG|B Chain B, Dynein Motor Domain - Atp Complex
pdb|4AKH|A Chain A, Dynein Motor Domain - Amppnp Complex
pdb|4AKH|B Chain B, Dynein Motor Domain - Amppnp Complex
pdb|4AKI|A Chain A, Dynein Motor Domain - Luac Derivative
pdb|4AKI|B Chain B, Dynein Motor Domain - Luac Derivative
Length = 2695
Score = 730 bits (1884), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 392/1034 (37%), Positives = 601/1034 (58%), Gaps = 56/1034 (5%)
Query: 29 WMEKVLQLYQISNLNHGLMMVGPSGSGKSTAWKVLLKALERYEGVEGVAHIIDPKAISKE 88
+++K +Q Y + L++VG +G GK+ WK ++ A+ ++G V ++ID K ++KE
Sbjct: 909 FLKKCMQFYYMQKTQQALILVGKAGCGKTATWKTVIDAMAIFDGHANVVYVIDTKVLTKE 968
Query: 89 ALYGVLDPNTREWTDGLFTHILRRIIDNVRGEI-SKRQWIIFDGDVDPEWVENLNSVLDD 147
+LYG + T EW DGLFT ILRR+ D++ G + R W++FD D+DPE+VE +NSVLDD
Sbjct: 969 SLYGSMLKATLEWRDGLFTSILRRVNDDITGTFKNSRIWVVFDSDLDPEYVEAMNSVLDD 1028
Query: 148 NKLLTLPNGERLSLPPNIRIMFEVQDLKYATLATVSRCGMIWFSEDVLSTEMIFENYLSR 207
NK+LTLPNGERL +PPN RI+FE +L + T AT++RCG++WFS DV S ++ L++
Sbjct: 1029 NKILTLPNGERLPIPPNFRILFETDNLDHTTPATITRCGLLWFSTDVCSISSKIDHLLNK 1088
Query: 208 LRNIAXXXXXXXXXXXXTVDATGKAPDDVLSPALTLQQDVASILSTHFAPDGLVVRALDY 267
D L ++ D+AS+ + + LV
Sbjct: 1089 SYEALDNKLSMFEL-------------DKLKDLISDSFDMASLTNIFTCSNDLV------ 1129
Query: 268 AMQQEHIMDFTRLRALGSLFSMLNQGVRNVLQYNHSHSDFPLSQDVVERYIPRILVYSLL 327
HI+ L + + + + Q+ + D L +DV+ I R SLL
Sbjct: 1130 -----HILGVRTFNKLETAVQLAVHLISSYRQWFQNLDDKSL-KDVITLLIKR----SLL 1179
Query: 328 WSFAGDGKLKMRSDFGNFLRSVTTITLPATSSDIVDFEVNIKNGEWVPWSN---KVPQIE 384
++ AGD + + F++++ T S ++ D+ + + + +S+ ++P +
Sbjct: 1180 YALAGDSTGESQR---AFIQTINTY-FGHDSQELSDYSTIVIANDKLSFSSFCSEIPSVS 1235
Query: 385 VETQKVAASDVVVPTLDTVRHESLLYTWLAEHKPLVLCGPPGSGKTMTLLSALRALPDME 444
+E +V D+V+PT+DT++HE + Y L + ++LCGPPGSGKTM + +ALR +
Sbjct: 1236 LEAHEVMRPDIVIPTIDTIKHEKIFYDLLNSKRGIILCGPPGSGKTMIMNNALRNSSLYD 1295
Query: 445 VVSLNFSSATTPELLLKTFDHYCEYRKTPNGVILSPIQLGKWLVLFCDEINLPDMDKYAT 504
VV +NFS TT E +L + Y T G+ L P K LVLFCDEINLP +DKY +
Sbjct: 1296 VVGINFSKDTTTEHILSALHRHTNYVTTSKGLTLLPKSDIKNLVLFCDEINLPKLDKYGS 1355
Query: 505 QRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLRHVPVIYV 564
Q V+ FLRQL+E++GF++ + +WV++ERI VGACNPPTDPGR P+S RF RH ++Y+
Sbjct: 1356 QNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHAAILYL 1415
Query: 565 DYPGETSLKQIYGTFSRAMLRLIPPLRGYADALTNAMVELYLASQEKFTQDMQPHYVYSP 624
YP SL QIY + +A+ +L+P R Y + A V LY + +++ +Q HY++SP
Sbjct: 1416 GYPSGKSLSQIYEIYYKAIFKLVPEFRSYTEPFARASVHLYNECKARYSTGLQSHYLFSP 1475
Query: 625 REMTRWVRGICEAIRPLESLTVEGLVRLWAHEALRLFQDRLVNDVERQWTNENIDAVAMK 684
RE+TR VRG+ AI T+ L+RLWA+EA R+F DRLV E+ + + K
Sbjct: 1476 RELTRLVRGVYTAINTGPRQTLRSLIRLWAYEAWRIFADRLVGVKEKNSFEQLLYETVDK 1535
Query: 685 YFSNID-KEVLARPILYSNWLSKNYVPVGTTELREYVQARLKVFYEEELDVQLVLFDEVL 743
Y N D + + +L+S LS ++ V T+L +++ R K F +EEL+V +V+ + ++
Sbjct: 1536 YLPNQDLGNISSTSLLFSGLLSLDFKEVNKTDLVNFIEERFKTFCDEELEVPMVIHESMV 1595
Query: 744 DHVLRIDRIFRQPQGHLLLIGVSGAGKTTLSRFVAFMNGLSVFQIRAHNKYTGADFDEDL 803
DH+LRIDR +Q QGH++LIG S GKT L+RFVA++NGL + Q + H +DFD L
Sbjct: 1596 DHILRIDRALKQVQGHMMLIGASRTGKTILTRFVAWLNGLKIVQPKIHRHSNLSDFDMIL 1655
Query: 804 RTVLRRSGCKNEKIAFLLDESNVLESGFLERMNTLLANGEIPGLFEGDEYTTLMTQCKEG 863
+ + K + ++DESN+LE+ FLERMNTLLAN +IP LF+G+EY L+ +
Sbjct: 1656 KKAISDCSLKESRTCLIIDESNILETAFLERMNTLLANADIPDLFQGEEYDKLLNNLRNK 1715
Query: 864 AQREGLMLDSNEELYKWFTQQVMKNLHVVFTMNPSSEGLKDRAATSPALFNRCVLNWFGD 923
+ GL+LD+ +ELY WF ++ KNLHVVFT+ + +SPALFNRC++NW GD
Sbjct: 1716 TRSLGLLLDTEQELYDWFVGEIAKNLHVVFTICDPTNNKSSAMISSPALFNRCIINWMGD 1775
Query: 924 WSDTALYQVAKEFTSKIDLDGPQNWKAPDFF-PSVCS-LVSTTP--SHRDSVINACVYVH 979
W + QVA I ++ DF P V LV T P + RD+V+N ++
Sbjct: 1776 WDTKTMSQVANNMVDVIPME------FTDFIVPEVNKELVFTEPIQTIRDAVVNILIHFD 1829
Query: 980 QTLH-KANARLSKRGSRTMAITPRHYLDFINHFVKLYREKCSELEEQQLHLNVGLGKIAE 1038
+ + K ++ R +P +++D + VKL K +L+E Q +NVGL K+ E
Sbjct: 1830 RNFYQKMKVGVNPR-------SPGYFIDGLRALVKLVTAKYQDLQENQRFVNVGLEKLNE 1882
Query: 1039 TVEQVEEMQKSLAV 1052
+V +V E+ K+L++
Sbjct: 1883 SVLKVNELNKTLSI 1896
Score = 177 bits (448), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 91/288 (31%), Positives = 164/288 (56%), Gaps = 2/288 (0%)
Query: 1328 SMALLKSLGIERERWEATSETFRSQMATIIGDVLLSSAYLAYAGYFDQHYRQSLFSTWNS 1387
S++L+KSL E+ERW T++ F +IG+ ++SS Y Y G+ ++ R +
Sbjct: 1895 SISLVKSLTFEKERWLNTTKQFSKTSQELIGNCIISSIYETYFGHLNERERADMLVILKR 1954
Query: 1388 HLIAAGIQFRPEIALTEYLSSPDERLRWQGNALPSDHLCTEN-AIMLRRFNRYPLIIDPS 1446
L +++ +YL + DE+++W L + EN +I++ + P ++DPS
Sbjct: 1955 LLGKFAVKYDVNYRFIDYLVTLDEKMKWLECGLDKNDYFLENMSIVMNSQDAVPFLLDPS 2014
Query: 1447 GQATEFILKEFESRKITKTSFLDDAFRKNLESALRFGNPLLVQDVENYDTILNPVLNREL 1506
++ + K SFL++ F K LE+A+RFG+ +++QD E +D I++ +++RE
Sbjct: 2015 SHMIT-VISNYYGNKTVLLSFLEEGFVKRLENAIRFGSVVIIQDGEFFDPIISRLISREF 2073
Query: 1507 RRTGGRVLITLGDQDIDISPTFVIFLSTRDPTVEFPPDICSRVTFVNFTVTRSSLQSQCL 1566
G RV + +GD ++D+S F +F+ + DP+ + P + SRV V+F + S++++
Sbjct: 2074 NHAGNRVTVEIGDHEVDVSGDFKLFIHSCDPSGDIPIFLRSRVRLVHFVTNKESIETRIF 2133
Query: 1567 NRVLKAERPDIDTKRSDLLKLQGEFHLRLRHLEKSLLGALNESKGKLL 1614
+ L E ++ KR DL+KL E+ L+L++LEK LL LN S+G +L
Sbjct: 2134 DITLTEENAEMQRKREDLIKLNTEYKLKLKNLEKRLLEELNNSQGNML 2181
>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
pdb|3QMZ|B Chain B, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
Length = 2486
Score = 729 bits (1882), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 391/1032 (37%), Positives = 600/1032 (58%), Gaps = 56/1032 (5%)
Query: 29 WMEKVLQLYQISNLNHGLMMVGPSGSGKSTAWKVLLKALERYEGVEGVAHIIDPKAISKE 88
+++K +Q Y + L++VG +G GK+ WK ++ A+ ++G V ++ID K ++KE
Sbjct: 690 FLKKCMQFYYMQKTQQALILVGKAGCGKTATWKTVIDAMAIFDGHANVVYVIDTKVLTKE 749
Query: 89 ALYGVLDPNTREWTDGLFTHILRRIIDNVRGEI-SKRQWIIFDGDVDPEWVENLNSVLDD 147
+LYG + T EW DGLFT ILRR+ D++ G + R W++FD D+DPE+VE +NSVLDD
Sbjct: 750 SLYGSMLKATLEWRDGLFTSILRRVNDDITGTFKNSRIWVVFDSDLDPEYVEAMNSVLDD 809
Query: 148 NKLLTLPNGERLSLPPNIRIMFEVQDLKYATLATVSRCGMIWFSEDVLSTEMIFENYLSR 207
NK+LTLPNGERL +PPN RI+FE +L + T AT++RCG++WFS DV S ++ L++
Sbjct: 810 NKILTLPNGERLPIPPNFRILFETDNLDHTTPATITRCGLLWFSTDVCSISSKIDHLLNK 869
Query: 208 LRNIAXXXXXXXXXXXXTVDATGKAPDDVLSPALTLQQDVASILSTHFAPDGLVVRALDY 267
+ D L ++ D+AS+ + + LV
Sbjct: 870 -------------SYEALDNKLSMFELDKLKDLISDSFDMASLTNIFTCSNDLV------ 910
Query: 268 AMQQEHIMDFTRLRALGSLFSMLNQGVRNVLQYNHSHSDFPLSQDVVERYIPRILVYSLL 327
HI+ L + + + + Q+ + D L +DV+ I R SLL
Sbjct: 911 -----HILGVRTFNKLETAVQLAVHLISSYRQWFQNLDDKSL-KDVITLLIKR----SLL 960
Query: 328 WSFAGDGKLKMRSDFGNFLRSVTTITLPATSSDIVDFEVNIKNGEWVPWSN---KVPQIE 384
++ AGD + + F++++ T S ++ D+ + + + +S+ ++P +
Sbjct: 961 YALAGDSTGESQR---AFIQTINTY-FGHDSQELSDYSTIVIANDKLSFSSFCSEIPSVS 1016
Query: 385 VETQKVAASDVVVPTLDTVRHESLLYTWLAEHKPLVLCGPPGSGKTMTLLSALRALPDME 444
+E +V D+V+PT+DT++HE + Y L + ++LCGPPGSGKTM + +ALR +
Sbjct: 1017 LEAHEVMRPDIVIPTIDTIKHEKIFYDLLNSKRGIILCGPPGSGKTMIMNNALRNSSLYD 1076
Query: 445 VVSLNFSSATTPELLLKTFDHYCEYRKTPNGVILSPIQLGKWLVLFCDEINLPDMDKYAT 504
VV +NFS TT E +L + Y T G+ L P K LVLFCDEINLP +DKY +
Sbjct: 1077 VVGINFSKDTTTEHILSALHRHTNYVTTSKGLTLLPKSDIKNLVLFCDEINLPKLDKYGS 1136
Query: 505 QRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLRHVPVIYV 564
Q V+ FLRQL+E++GF++ + +WV++ERI VGACNPPTDPGR P+S RF RH ++Y+
Sbjct: 1137 QNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHAAILYL 1196
Query: 565 DYPGETSLKQIYGTFSRAMLRLIPPLRGYADALTNAMVELYLASQEKFTQDMQPHYVYSP 624
YP SL QIY + +A+ +L+P R Y + A V LY + +++ +Q HY++SP
Sbjct: 1197 GYPSGKSLSQIYEIYYKAIFKLVPEFRSYTEPFARASVHLYNECKARYSTGLQSHYLFSP 1256
Query: 625 REMTRWVRGICEAIRPLESLTVEGLVRLWAHEALRLFQDRLVNDVERQWTNENIDAVAMK 684
RE+TR VRG+ AI T+ L+RLWA+EA R+F DRLV E+ + + K
Sbjct: 1257 RELTRLVRGVYTAINTGPRQTLRSLIRLWAYEAWRIFADRLVGVKEKNSFEQLLYETVDK 1316
Query: 685 YFSNID-KEVLARPILYSNWLSKNYVPVGTTELREYVQARLKVFYEEELDVQLVLFDEVL 743
Y N D + + +L+S LS ++ V T+L +++ R K F +EEL+V +V+ + ++
Sbjct: 1317 YLPNQDLGNISSTSLLFSGLLSLDFKEVNKTDLVNFIEERFKTFCDEELEVPMVIHESMV 1376
Query: 744 DHVLRIDRIFRQPQGHLLLIGVSGAGKTTLSRFVAFMNGLSVFQIRAHNKYTGADFDEDL 803
DH+LRIDR +Q QGH++LIG S GKT L+RFVA++NGL + Q + H +DFD L
Sbjct: 1377 DHILRIDRALKQVQGHMMLIGASRTGKTILTRFVAWLNGLKIVQPKIHRHSNLSDFDMIL 1436
Query: 804 RTVLRRSGCKNEKIAFLLDESNVLESGFLERMNTLLANGEIPGLFEGDEYTTLMTQCKEG 863
+ + K + ++DESN+LE+ FLERMNTLLAN +IP LF+G+EY L+ +
Sbjct: 1437 KKAISDCSLKESRTCLIIDESNILETAFLERMNTLLANADIPDLFQGEEYDKLLNNLRNK 1496
Query: 864 AQREGLMLDSNEELYKWFTQQVMKNLHVVFTMNPSSEGLKDRAATSPALFNRCVLNWFGD 923
+ GL+LD+ +ELY WF ++ KNLHVVFT+ + +SPALFNRC++NW GD
Sbjct: 1497 TRSLGLLLDTEQELYDWFVGEIAKNLHVVFTICDPTNNKSSAMISSPALFNRCIINWMGD 1556
Query: 924 WSDTALYQVAKEFTSKIDLDGPQNWKAPDFF-PSVCS-LVSTTP--SHRDSVINACVYVH 979
W + QVA + ++ DF P V LV T P + RD+V+N ++
Sbjct: 1557 WDTKTMSQVANNMVDVVPME------FTDFIVPEVNKELVFTEPIQTIRDAVVNILIHFD 1610
Query: 980 QTLH-KANARLSKRGSRTMAITPRHYLDFINHFVKLYREKCSELEEQQLHLNVGLGKIAE 1038
+ + K ++ R +P +++D + VKL K +L+E Q +NVGL K+ E
Sbjct: 1611 RNFYQKMKVGVNPR-------SPGYFIDGLRALVKLVTAKYQDLQENQRFVNVGLEKLNE 1663
Query: 1039 TVEQVEEMQKSL 1050
+V +V E+ K+L
Sbjct: 1664 SVLKVNELNKTL 1675
Score = 178 bits (452), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 92/290 (31%), Positives = 165/290 (56%), Gaps = 2/290 (0%)
Query: 1326 ERSMALLKSLGIERERWEATSETFRSQMATIIGDVLLSSAYLAYAGYFDQHYRQSLFSTW 1385
E S++L+KSL E+ERW T++ F +IG+ ++SS Y Y G+ ++ R +
Sbjct: 1684 EASISLVKSLTFEKERWLNTTKQFSKTSQELIGNCIISSIYETYFGHLNERERGDMLVIL 1743
Query: 1386 NSHLIAAGIQFRPEIALTEYLSSPDERLRWQGNALPSDHLCTEN-AIMLRRFNRYPLIID 1444
L +++ +YL + DE+++W L + EN +I++ + P ++D
Sbjct: 1744 KRLLGKFAVKYDVNYRFIDYLVTLDEKMKWLECGLDKNDYFLENMSIVMNSQDAVPFLLD 1803
Query: 1445 PSGQATEFILKEFESRKITKTSFLDDAFRKNLESALRFGNPLLVQDVENYDTILNPVLNR 1504
PS ++ + K SFL++ F K LE+A+RFG+ +++QD E +D I++ +++R
Sbjct: 1804 PSSHMIT-VISNYYGNKTVLLSFLEEGFVKRLENAVRFGSVVIIQDGEFFDPIISRLISR 1862
Query: 1505 ELRRTGGRVLITLGDQDIDISPTFVIFLSTRDPTVEFPPDICSRVTFVNFTVTRSSLQSQ 1564
E G RV + +GD ++D+S F +F+ + DP+ + P + SRV V+F + S++++
Sbjct: 1863 EFNHAGNRVTVEIGDHEVDVSGDFKLFIHSCDPSGDIPIFLRSRVRLVHFVTNKESIETR 1922
Query: 1565 CLNRVLKAERPDIDTKRSDLLKLQGEFHLRLRHLEKSLLGALNESKGKLL 1614
+ L E ++ KR DL+KL E+ L+L++LEK LL LN S+G +L
Sbjct: 1923 IFDITLTEENAEMQRKREDLIKLNTEYRLKLKNLEKRLLEELNNSQGNML 1972
>pdb|3J1T|A Chain A, High Affinity Dynein Microtubule Binding Domain - Tubulin
Complex
pdb|3J1U|A Chain A, Low Affinity Dynein Microtubule Binding Domain - Tubulin
Complex
Length = 164
Score = 225 bits (574), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 111/165 (67%), Positives = 135/165 (81%), Gaps = 1/165 (0%)
Query: 1094 KQTVEIAQKRVFVMEDLAQVEPAVMDAQQAVKEIKKQQLVELRSMANPPSVVKLALESIC 1153
KQ IA K++ V EDL +VEPAV++AQ AVK IKKQ LVE+RSMANPP+ VKLALESIC
Sbjct: 1 KQQEVIADKQMSVKEDLDKVEPAVIEAQNAVKSIKKQHLVEVRSMANPPAAVKLALESIC 60
Query: 1154 LLLGENATDWKAIRAVVMRENFINSIVSNFNTEMITDEVREKMHSRYLSNPDYSYEKANR 1213
LLLGE+ TDWK IR+++MRENFI +IV NF+ E I+D +REKM Y+SNP Y+YE NR
Sbjct: 61 LLLGESTTDWKQIRSIIMRENFIPTIV-NFSAEEISDAIREKMKKNYMSNPSYNYEIVNR 119
Query: 1214 ASMACGPMVKWAIAQISYADMLKKVEPLRLELKSLEVQASENKAK 1258
AS+ACGPMVKWAIAQ++YADMLK+VEPLR EL+ LE A +N+ K
Sbjct: 120 ASLACGPMVKWAIAQLNYADMLKRVEPLRNELQKLEDDAKDNQQK 164
>pdb|3ERR|A Chain A, Microtubule Binding Domain From Mouse Cytoplasmic Dynein As
A Fusion With Seryl-Trna Synthetase
pdb|3ERR|B Chain B, Microtubule Binding Domain From Mouse Cytoplasmic Dynein As
A Fusion With Seryl-Trna Synthetase
Length = 536
Score = 220 bits (560), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 110/173 (63%), Positives = 137/173 (79%), Gaps = 1/173 (0%)
Query: 1088 IQAEIEKQTVEIAQKRVFVMEDLAQVEPAVMDAQQAVKEIKKQQLVELRSMANPPSVVKL 1147
+ ++ KQ IA K++ V EDL +VEPAV++AQ AVK IKKQ LVE+RSMANPP+ VKL
Sbjct: 33 VDEQLHKQQEVIADKQMSVKEDLDKVEPAVIEAQNAVKSIKKQHLVEVRSMANPPAAVKL 92
Query: 1148 ALESICLLLGENATDWKAIRAVVMRENFINSIVSNFNTEMITDEVREKMHSRYLSNPDYS 1207
ALESI LLLGE+ TDWK IR+++MRENFI +IV NF+ E I+D +REKM Y+SNP Y+
Sbjct: 93 ALESIALLLGESTTDWKQIRSIIMRENFIPTIV-NFSAEEISDAIREKMKKNYMSNPSYN 151
Query: 1208 YEKANRASMACGPMVKWAIAQISYADMLKKVEPLRLELKSLEVQASENKAKGE 1260
YE NRAS+A GPMVKWAIAQ++YADMLK+VEPLR EL+ LE A +N+ K E
Sbjct: 152 YEIVNRASLAAGPMVKWAIAQLNYADMLKRVEPLRNELQKLEDDAKDNQQKLE 204
>pdb|2RR7|A Chain A, Microtubule Binding Domain Of Dynein-C
Length = 155
Score = 68.2 bits (165), Expect = 4e-11, Method: Composition-based stats.
Identities = 42/151 (27%), Positives = 82/151 (54%), Gaps = 15/151 (9%)
Query: 1109 DLAQVEPAVMDAQQAVKEIKKQQLVELRSMANPPSVVKLALESICLLLG-------ENAT 1161
DLA+ P + A +A+ +K + E++ M +PP+ V+ LE+IC++ G + A+
Sbjct: 5 DLAEALPLLEAALKALDTLKPADITEVKGMKSPPAGVRRVLEAICIMKGVKPARVKDTAS 64
Query: 1162 D------WKAIRAVVMRENFINSIVSNFNTEMITDEVREKMHSRYLSNPDYSYEKANRAS 1215
W+A + ++M +F++S+ F+ + I EV K+ + +P++ + + S
Sbjct: 65 GRMVDDYWEASKKMLMEFDFLDSL-RKFDKDHIPPEVIVKIRP-FAQDPEFQPKVIEKQS 122
Query: 1216 MACGPMVKWAIAQISYADMLKKVEPLRLELK 1246
+AC + W IA Y ++K+VEP R +L+
Sbjct: 123 VACAGLCSWVIALEKYDKVIKEVEPKRQKLR 153
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 34.7 bits (78), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 8/65 (12%)
Query: 368 IKNGEWVPWSNKVPQIEVETQKVAASDVVVPTLDTVRHESLLYTWL-AEHKPLVLCGPPG 426
++ G V W++ Q + K A ++V+ L +VR E L+T L A K L+L GPPG
Sbjct: 12 VEGGAKVEWTDIAGQ---DVAKQALQEMVI--LPSVRPE--LFTGLRAPAKGLLLFGPPG 64
Query: 427 SGKTM 431
+GKT+
Sbjct: 65 NGKTL 69
>pdb|4EUN|A Chain A, Crystal Structure Of A Sugar Kinase (Target Efi-502144
From Janibacter Sp. Htcc2649), Unliganded Structure
Length = 200
Score = 33.5 bits (75), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 24/36 (66%)
Query: 755 QPQGHLLLIGVSGAGKTTLSRFVAFMNGLSVFQIRA 790
+P H++++GVSG+GKTT++ VA GL + A
Sbjct: 27 EPTRHVVVMGVSGSGKTTIAHGVADETGLEFAEADA 62
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 32.7 bits (73), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 7/48 (14%)
Query: 754 RQPQGHLLLIGVSGAGKTTLSRFVAFMNGLSVFQIRAHNKYTGADFDE 801
R P+G +LL+G G GKT L+R VA + F I +G+DF E
Sbjct: 47 RMPKG-ILLVGPPGTGKTLLARAVAGEANVPFFHI------SGSDFVE 87
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 32.7 bits (73), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 55/112 (49%), Gaps = 18/112 (16%)
Query: 762 LIGVSGAGKTTLSRFVAFMNGLSVFQIRAHNKYTGADFDEDLRTVLRRSGCKNEKIAFLL 821
++G SG+GK+T+ + ++ + ++ N T D D+D T +RR +KI F+
Sbjct: 36 IMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTN-DLDDDELTKIRR-----DKIGFVF 89
Query: 822 DESNVLESGFLERMNTLLANGEIPGLFE------GDEYTTLMTQCKEGAQRE 867
+ N++ + T L N E+P +F+ G+E +C + A+ E
Sbjct: 90 QQFNLIP------LLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELE 135
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 32.7 bits (73), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 64/239 (26%), Positives = 107/239 (44%), Gaps = 42/239 (17%)
Query: 337 KMRSDFGNFLRSVTTITLPATSSDIVDFEVNIKNGEWVPWSNKVPQIEVETQKVAASDVV 396
+ + D NF R+V + ++IVD NG V + + Q + K A ++V
Sbjct: 82 RKKKDLKNF-RNVDSNLANLIMNEIVD------NGTAVKFDDIAGQ---DLAKQALQEIV 131
Query: 397 VPTLDTVRHESLLYTWL-AEHKPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATT 455
+ L ++R E L+T L A + L+L GPPG+GKTM L A+ A + N S+A+
Sbjct: 132 I--LPSLRPE--LFTGLRAPARGLLLFGPPGNGKTM-LAKAVAA--ESNATFFNISAASL 184
Query: 456 PELLLKTFDHYCEYRKTPNGVILSPIQLGKWLVLFCDEIN-----LPDMDKYATQRVISF 510
T + E K + +L + ++F D+++ + + A++R+ +
Sbjct: 185 ------TSKYVGEGEKLVRALFAVAREL-QPSIIFIDQVDSLLCERREGEHDASRRLKTE 237
Query: 511 LRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLRHVPVIYVDYPGE 569
LIE G D +R+ +GA N P + L RF++ V YV P E
Sbjct: 238 F--LIEFDGVQSAGD------DRVLVMGATNRPQELDEAVL-RRFIKRV---YVSLPNE 284
>pdb|4B3G|A Chain A, Crystal Structure Of Ighmbp2 Helicase In Complex With Rna
pdb|4B3G|B Chain B, Crystal Structure Of Ighmbp2 Helicase In Complex With Rna
Length = 646
Score = 32.3 bits (72), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 26/35 (74%), Gaps = 1/35 (2%)
Query: 400 LDTVRHESLLYTWLAEHKPLVLCGPPGSGKTMTLL 434
LDT + E++L+ L++ + ++ GPPG+GKT T++
Sbjct: 190 LDTSQKEAVLFA-LSQKELAIIHGPPGTGKTTTVV 223
>pdb|2ZIU|A Chain A, Crystal Structure Of The Mus81-Eme1 Complex
pdb|2ZIV|A Chain A, Crystal Structure Of The Mus81-Eme1 Complex
Length = 311
Score = 32.3 bits (72), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 50/109 (45%), Gaps = 2/109 (1%)
Query: 929 LYQVAKEFTSKIDLDGPQNWKAPDFFPSV-CSLVSTTPSHRDSVINACVYVHQTLHKANA 987
LYQ F +L+G ++ ++ CSL++ T + ++ N C V + +
Sbjct: 181 LYQNCTLFCRSRELEGDGEAESEKMVANLSCSLMAFTEFNYGAIKNKCQTVREVFARQLM 240
Query: 988 RLSKRGSRTMAITPRHYLDFINHFVKLYREKCSELEEQQLHLNVGLGKI 1036
++S A HY ++ ++ Y + SE E+++L +V GK+
Sbjct: 241 QISGVSGDKAAAVLEHY-STVSSLLQAYDKCSSETEKEKLLSSVKYGKL 288
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 32.3 bits (72), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 55/112 (49%), Gaps = 18/112 (16%)
Query: 762 LIGVSGAGKTTLSRFVAFMNGLSVFQIRAHNKYTGADFDEDLRTVLRRSGCKNEKIAFLL 821
++G SG+GK+T+ + ++ + ++ N T D D+D T +RR +KI F+
Sbjct: 36 IMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTN-DLDDDELTKIRR-----DKIGFVF 89
Query: 822 DESNVLESGFLERMNTLLANGEIPGLFE------GDEYTTLMTQCKEGAQRE 867
+ N++ + T L N E+P +F+ G+E +C + A+ E
Sbjct: 90 QQFNLIP------LLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELE 135
>pdb|4B3F|X Chain X, Crystal Structure Of 1ghmbp2 Helicase
Length = 646
Score = 32.3 bits (72), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 26/35 (74%), Gaps = 1/35 (2%)
Query: 400 LDTVRHESLLYTWLAEHKPLVLCGPPGSGKTMTLL 434
LDT + E++L+ L++ + ++ GPPG+GKT T++
Sbjct: 190 LDTSQKEAVLFA-LSQKELAIIHGPPGTGKTTTVV 223
>pdb|3K1J|A Chain A, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
pdb|3K1J|B Chain B, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
Length = 604
Score = 31.6 bits (70), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 730 EELDVQLVLFDEVL--DHVLRIDRIFRQPQGHLLLIGVSGAGKTTLSRFVA 778
EE++V L D+V+ +H + + + + H+LLIG G GK+ L + +A
Sbjct: 31 EEIEVPEKLIDQVIGQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMA 81
>pdb|3U2O|A Chain A, Dihydroorotate Dehydrogenase (Dhodh) Crystal Structure In
Complex With Small Molecule Inhibitor
Length = 395
Score = 31.6 bits (70), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 66/156 (42%), Gaps = 15/156 (9%)
Query: 1003 HYLDFINHFVKLYREKCSELEEQQLHLNVGLGKIAETVEQVEEMQKSLAVKSQ------- 1055
H L + H ++ ++K ++L E L L V LGK +V+ E+ + + V
Sbjct: 151 HGLSVVEHRLRARQQKQAKLTEDGLPLGVNLGKNKTSVDAAEDYAEGVRVLGPLADYLVV 210
Query: 1056 ELQSKNEAANLKLKEMIKDQQEAEKRKVQSQDIQAEIEKQTVEIAQKRVFVMEDLAQVEP 1115
+ S N A L Q +AE R++ ++ +Q + V V + DL +
Sbjct: 211 NVSSPNTAGLRSL------QGKAELRRLLTKVLQERDGLRRVHRPAVLVKIAPDLTSQDK 264
Query: 1116 AVMDAQQAVKEIKKQQLVELRSMANPPSVVKLALES 1151
D VKE+ L+ + + P+ ++ AL S
Sbjct: 265 E--DIASVVKELGIDGLIVTNTTVSRPAGLQGALRS 298
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 31.6 bits (70), Expect = 3.8, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 53/112 (47%), Gaps = 18/112 (16%)
Query: 762 LIGVSGAGKTTLSRFVAFMNGLSVFQIRAHNKYTGADFDEDLRTVLRRSGCKNEKIAFLL 821
+ G SG+GK+T + ++ + ++ N T D D+D T +RR +KI F+
Sbjct: 36 IXGPSGSGKSTXLNIIGCLDKPTEGEVYIDNIKTN-DLDDDELTKIRR-----DKIGFVF 89
Query: 822 DESNVLESGFLERMNTLLANGEIPGLFE------GDEYTTLMTQCKEGAQRE 867
+ N++ + T L N E+P +F+ G+E +C + A+ E
Sbjct: 90 QQFNLIP------LLTALENVELPLIFKYRGAXSGEERRKRALECLKXAELE 135
>pdb|1HJS|A Chain A, Structure Of Two Fungal Beta-1,4-Galactanases: Searching For
The Basis For Temperature And Ph Optimum.
pdb|1HJS|B Chain B, Structure Of Two Fungal Beta-1,4-Galactanases: Searching For
The Basis For Temperature And Ph Optimum.
pdb|1HJS|C Chain C, Structure Of Two Fungal Beta-1,4-Galactanases: Searching For
The Basis For Temperature And Ph Optimum.
pdb|1HJS|D Chain D, Structure Of Two Fungal Beta-1,4-Galactanases: Searching For
The Basis For Temperature And Ph Optimum.
pdb|1HJU|A Chain A, Structure Of Two Fungal Beta-1,4-Galactanases: Searching For
The Basis For Temperature And Ph Optimum.
pdb|1HJU|B Chain B, Structure Of Two Fungal Beta-1,4-Galactanases: Searching For
The Basis For Temperature And Ph Optimum.
pdb|1HJU|C Chain C, Structure Of Two Fungal Beta-1,4-Galactanases: Searching For
The Basis For Temperature And Ph Optimum.
pdb|1HJU|D Chain D, Structure Of Two Fungal Beta-1,4-Galactanases: Searching For
The Basis For Temperature And Ph Optimum
Length = 332
Score = 31.6 bits (70), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 29/55 (52%)
Query: 1280 YAQLIAQATAIKTDLDNVQAKFYEYAQLIAQATAIKTDLDNVQAKVERSMALLKS 1334
Y ++ Q T +D D + FY + A +A+K+ LDN+ + +A++++
Sbjct: 192 YTNVLKQGTLELSDFDMMGVSFYPFYSSSATLSALKSSLDNMAKTWNKEIAVVET 246
>pdb|2WV8|A Chain A, Complex Of Human Dihydroorotate Dehydrogenase With The
Inhibitor 221290
Length = 365
Score = 31.2 bits (69), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 66/156 (42%), Gaps = 15/156 (9%)
Query: 1003 HYLDFINHFVKLYREKCSELEEQQLHLNVGLGKIAETVEQVEEMQKSLAVKSQ------- 1055
H L + H ++ ++K ++L E L L V LGK +V+ E+ + + V
Sbjct: 121 HGLSVVEHRLRARQQKQAKLTEDGLPLGVNLGKNKTSVDAAEDYAEGVRVLGPLADYLVV 180
Query: 1056 ELQSKNEAANLKLKEMIKDQQEAEKRKVQSQDIQAEIEKQTVEIAQKRVFVMEDLAQVEP 1115
+ S N A L Q +AE R++ ++ +Q + V V + DL +
Sbjct: 181 NVSSPNTAGLRSL------QGKAELRRLLTKVLQERDGLRRVHRPAVLVKIAPDLTSQDK 234
Query: 1116 AVMDAQQAVKEIKKQQLVELRSMANPPSVVKLALES 1151
D VKE+ L+ + + P+ ++ AL S
Sbjct: 235 E--DIASVVKELGIDGLIVTNTTVSRPAGLQGALRS 268
>pdb|1D3G|A Chain A, Human Dihydroorotate Dehydrogenase Complexed With Brequinar
Analog
pdb|1D3H|A Chain A, Human Dihydroorotate Dehydrogenase Complexed With
Antiproliferative Agent A771726
pdb|2BXV|A Chain A, Dual Binding Mode Of A Novel Series Of Dhodh Inhibitors
pdb|2PRH|A Chain A, The Structures Of Apo- And Inhibitor Bound Human
Dihydroorotate Dehydrogenase Reveal Conformational
Flexibility Within The Inhibitor Binding Site
pdb|2PRL|A Chain A, The Structures Of Apo- And Inhibitor Bound Human
Dihydroorotate Dehydrogenase Reveal Conformational
Flexibility Within The Inhibitor Binding Site
pdb|2PRM|A Chain A, The Structures Of Apo- And Inhibitor Bound Human
Dihydroorotate Dehydrogenase Reveal Conformational
Flexibility Within The Inhibitor Binding Site
pdb|3F1Q|A Chain A, Human Dihydroorotate Dehydrogenase In Complex With A
Leflunomide Derivative Inhibitor 1
pdb|3FJ6|A Chain A, Human Dihydroorotate Dehydrogenase In Complex With A
Leflunomide Derivative Inhibitor 2
pdb|3FJL|A Chain A, Human Dihydroorotate Dehydrogenase In Complex With A
Leflunomide Derivative Inhibitor 3
pdb|3G0U|A Chain A, Human Dihydroorotate Dehydrogenase In Complex With A
Leflunomide Derivative Inhibitor 4
pdb|3G0X|A Chain A, Human Dihydroorotate Dehydrogenase In Complex With A
Leflunomide Derivative Inhibitor 5
pdb|3ZWS|A Chain A, Structure Of Human Dihydroorotate Dehydrogenase With A Bound
Inhibitor
pdb|3ZWT|A Chain A, Structure Of Human Dihydroorotate Dehydrogenase With A Bound
Inhibitor
Length = 367
Score = 31.2 bits (69), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 66/156 (42%), Gaps = 15/156 (9%)
Query: 1003 HYLDFINHFVKLYREKCSELEEQQLHLNVGLGKIAETVEQVEEMQKSLAVKSQ------- 1055
H L + H ++ ++K ++L E L L V LGK +V+ E+ + + V
Sbjct: 123 HGLSVVEHRLRARQQKQAKLTEDGLPLGVNLGKNKTSVDAAEDYAEGVRVLGPLADYLVV 182
Query: 1056 ELQSKNEAANLKLKEMIKDQQEAEKRKVQSQDIQAEIEKQTVEIAQKRVFVMEDLAQVEP 1115
+ S N A L Q +AE R++ ++ +Q + V V + DL +
Sbjct: 183 NVSSPNTAGLRSL------QGKAELRRLLTKVLQERDGLRRVHRPAVLVKIAPDLTSQDK 236
Query: 1116 AVMDAQQAVKEIKKQQLVELRSMANPPSVVKLALES 1151
D VKE+ L+ + + P+ ++ AL S
Sbjct: 237 E--DIASVVKELGIDGLIVTNTTVSRPAGLQGALRS 270
>pdb|3KVJ|A Chain A, Crystal Structure Of Human Dihydroorotate Dehydrogenase
(Dhodh) With Amino-Benzoic Acid Inhibitor 105 At 1.94a
Resolution
pdb|3KVK|A Chain A, Crystal Structure Of Human Dihydroorotate Dehydrogenase
(Dhodh) With Amino-Benzoic Acid Inhibitor 641 At 2.05a
Resolution
pdb|3KVL|A Chain A, Crystal Structure Of Human Dihydroorotate Dehydrogenase
(Dhodh) With Amino-Benzoic Acid Inhibitor 715 At 1.85a
Resolution
pdb|3KVM|A Chain A, Crystal Structure Of Human Dihydroorotate Dehydrogenase
(Dhodh) With Amino-Benzoic Acid Inhibitor 951 At 2.00a
Resolution
Length = 390
Score = 31.2 bits (69), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 66/156 (42%), Gaps = 15/156 (9%)
Query: 1003 HYLDFINHFVKLYREKCSELEEQQLHLNVGLGKIAETVEQVEEMQKSLAVKSQ------- 1055
H L + H ++ ++K ++L E L L V LGK +V+ E+ + + V
Sbjct: 146 HGLSVVEHRLRARQQKQAKLTEDGLPLGVNLGKNKTSVDAAEDYAEGVRVLGPLADYLVV 205
Query: 1056 ELQSKNEAANLKLKEMIKDQQEAEKRKVQSQDIQAEIEKQTVEIAQKRVFVMEDLAQVEP 1115
+ S N A L Q +AE R++ ++ +Q + V V + DL +
Sbjct: 206 NVSSPNTAGLRSL------QGKAELRRLLTKVLQERDGLRRVHRPAVLVKIAPDLTSQDK 259
Query: 1116 AVMDAQQAVKEIKKQQLVELRSMANPPSVVKLALES 1151
D VKE+ L+ + + P+ ++ AL S
Sbjct: 260 E--DIASVVKELGIDGLIVTNTTVSRPAGLQGALRS 293
>pdb|2FPT|A Chain A, Dual Binding Mode Of A Novel Series Of Dhodh Inhibitors
pdb|2FPV|A Chain A, Dual Binding Mode Of A Novel Series Of Dhodh Inhibitors
pdb|2FPY|A Chain A, Dual Binding Mode Of A Novel Series Of Dhodh Inhibitors
pdb|2FQI|A Chain A, Dual Binding Modes Of A Novel Series Of Dhodh Inhibitors
Length = 395
Score = 31.2 bits (69), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 66/156 (42%), Gaps = 15/156 (9%)
Query: 1003 HYLDFINHFVKLYREKCSELEEQQLHLNVGLGKIAETVEQVEEMQKSLAVKSQ------- 1055
H L + H ++ ++K ++L E L L V LGK +V+ E+ + + V
Sbjct: 151 HGLSVVEHRLRARQQKQAKLTEDGLPLGVNLGKNKTSVDAAEDYAEGVRVLGPLADYLVV 210
Query: 1056 ELQSKNEAANLKLKEMIKDQQEAEKRKVQSQDIQAEIEKQTVEIAQKRVFVMEDLAQVEP 1115
+ S N A L Q +AE R++ ++ +Q + V V + DL +
Sbjct: 211 NVSSPNTAGLRSL------QGKAELRRLLTKVLQERDGLRRVHRPAVLVKIAPDLTSQDK 264
Query: 1116 AVMDAQQAVKEIKKQQLVELRSMANPPSVVKLALES 1151
D VKE+ L+ + + P+ ++ AL S
Sbjct: 265 E--DIASVVKELGIDGLIVTNTTVSRPAGLQGALRS 298
>pdb|1G8P|A Chain A, Crystal Structure Of Bchi Subunit Of Magnesium Chelatase
pdb|2X31|G Chain G, Modelling Of The Complex Between Subunits Bchi And Bchd
Of Magnesium Chelatase Based On Single-Particle Cryo-Em
Reconstruction At 7.5 Ang
pdb|2X31|H Chain H, Modelling Of The Complex Between Subunits Bchi And Bchd
Of Magnesium Chelatase Based On Single-Particle Cryo-Em
Reconstruction At 7.5 Ang
pdb|2X31|I Chain I, Modelling Of The Complex Between Subunits Bchi And Bchd
Of Magnesium Chelatase Based On Single-Particle Cryo-Em
Reconstruction At 7.5 Ang
pdb|2X31|J Chain J, Modelling Of The Complex Between Subunits Bchi And Bchd
Of Magnesium Chelatase Based On Single-Particle Cryo-Em
Reconstruction At 7.5 Ang
pdb|2X31|K Chain K, Modelling Of The Complex Between Subunits Bchi And Bchd
Of Magnesium Chelatase Based On Single-Particle Cryo-Em
Reconstruction At 7.5 Ang
pdb|2X31|L Chain L, Modelling Of The Complex Between Subunits Bchi And Bchd
Of Magnesium Chelatase Based On Single-Particle Cryo-Em
Reconstruction At 7.5 Ang
Length = 350
Score = 31.2 bits (69), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%)
Query: 30 MEKVLQLYQISNLNHGLMMVGPSGSGKSTAWKVLLKALERYEGVEG 75
M+ L L + G+++ G G+GKSTA + L L E VEG
Sbjct: 32 MKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEG 77
>pdb|2B0M|A Chain A, Human Dihydroorotate Dehydrogenase Bound To A Novel
Inhibitor
Length = 393
Score = 31.2 bits (69), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 66/156 (42%), Gaps = 15/156 (9%)
Query: 1003 HYLDFINHFVKLYREKCSELEEQQLHLNVGLGKIAETVEQVEEMQKSLAVKSQ------- 1055
H L + H ++ ++K ++L E L L V LGK +V+ E+ + + V
Sbjct: 149 HGLSVVEHRLRARQQKQAKLTEDGLPLGVNLGKNKTSVDAAEDYAEGVRVLGPLADYLVV 208
Query: 1056 ELQSKNEAANLKLKEMIKDQQEAEKRKVQSQDIQAEIEKQTVEIAQKRVFVMEDLAQVEP 1115
+ S N A L Q +AE R++ ++ +Q + V V + DL +
Sbjct: 209 NVSSPNTAGLRSL------QGKAELRRLLTKVLQERDGLRRVHRPAVLVKIAPDLTSQDK 262
Query: 1116 AVMDAQQAVKEIKKQQLVELRSMANPPSVVKLALES 1151
D VKE+ L+ + + P+ ++ AL S
Sbjct: 263 E--DIASVVKELGIDGLIVTNTTVSRPAGLQGALRS 296
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 31.2 bits (69), Expect = 5.3, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 29/45 (64%), Gaps = 9/45 (20%)
Query: 760 LLLIGVSGAGKTTLSRFVA---------FMNGLSVFQIRAHNKYT 795
++++G +G+GKTTL R ++ F+NG+ V +IR + +Y+
Sbjct: 33 VIILGPNGSGKTTLLRAISGLLPYSGNIFINGMEVRKIRNYIRYS 77
>pdb|1R9J|A Chain A, Transketolase From Leishmania Mexicana
pdb|1R9J|B Chain B, Transketolase From Leishmania Mexicana
Length = 673
Score = 30.8 bits (68), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 24/113 (21%), Positives = 54/113 (47%), Gaps = 19/113 (16%)
Query: 350 TTITLPATSSDIVDFEVNIKNGEWVPWSNKVPQIEVETQKVAASDVVVP----------- 398
+ +T PA S+++VDF + K G ++ + + + + A D ++P
Sbjct: 382 SNLTRPA-SANLVDFSSSSKEGRYIRFGVREHAMCAILNGLDAHDGIIPFGGTFLNFIGY 440
Query: 399 -----TLDTVRHESLLYTWLAEHKPLVLCGPPGSGKTMTLLSALRALPDMEVV 446
L + H ++Y +A H + + + + + L++ALRA+P+++V+
Sbjct: 441 ALGAVRLAAISHHRVIY--VATHDSIGVGEDGPTHQPVELVAALRAMPNLQVI 491
>pdb|1ZAP|A Chain A, Secreted Aspartic Protease From C. Albicans
Length = 342
Score = 30.8 bits (68), Expect = 6.2, Method: Composition-based stats.
Identities = 40/183 (21%), Positives = 70/183 (38%), Gaps = 19/183 (10%)
Query: 1192 VREKMHSRYLSNPDYSYEKANRASMACGPMVKWAIAQISYADMLKKV-----EPLRLELK 1246
+ + +S YL++PD A G ++ + Y+ L + LR+ L
Sbjct: 150 IAKNAYSLYLNSPD----------SATGQIIFGGVDNAKYSGSLIALPVTSDRELRISLG 199
Query: 1247 SLEVQASENKAKGEETKDLITQLEKSIASYKDEYAQLIAQATAIKTDLDNVQAKFYEYAQ 1306
S+EV K + D++ +I + + A I +A K D+ FYE
Sbjct: 200 SVEVSG---KTINTDNVDVLLDSGTTITYLQQDLADQIIKAFNGKLTQDSNGNSFYEVDC 256
Query: 1307 LIAQATAIKTDLDNVQAKVERSMALLKSLGIERERWEATSETFRSQMATIIGDVLLSSAY 1366
++ N + V S + G + + ++ F A I+GD L SAY
Sbjct: 257 NLSGDVVFNFS-KNAKISVPASDFAASTQGDDGQPYDKCQLLFDVNKANILGDNFLRSAY 315
Query: 1367 LAY 1369
+ Y
Sbjct: 316 IVY 318
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 30.4 bits (67), Expect = 8.7, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 754 RQPQGHLLLIGVSGAGKTTLSRFVAFMNGLSV 785
++P HLLL G G GKTTL+ +A G+++
Sbjct: 35 KEPLEHLLLFGPPGLGKTTLAHVIAHELGVNL 66
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 30.4 bits (67), Expect = 8.9, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 754 RQPQGHLLLIGVSGAGKTTLSRFVAFMNGLSV 785
++P HLLL G G GKTTL+ +A G+++
Sbjct: 35 KEPLEHLLLFGPPGLGKTTLAHVIAHELGVNL 66
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 30.4 bits (67), Expect = 8.9, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 754 RQPQGHLLLIGVSGAGKTTLSRFVAFMNGLSV 785
++P HLLL G G GKTTL+ +A G+++
Sbjct: 35 KEPLEHLLLFGPPGLGKTTLAHVIAHELGVNL 66
>pdb|3C9I|A Chain A, Structure Of P22 Tail-Needle Gp26 Bound To Xenon Gas
pdb|3C9I|B Chain B, Structure Of P22 Tail-Needle Gp26 Bound To Xenon Gas
pdb|3C9I|C Chain C, Structure Of P22 Tail-Needle Gp26 Bound To Xenon Gas
pdb|3C9I|D Chain D, Structure Of P22 Tail-Needle Gp26 Bound To Xenon Gas
pdb|3C9I|E Chain E, Structure Of P22 Tail-Needle Gp26 Bound To Xenon Gas
pdb|3C9I|F Chain F, Structure Of P22 Tail-Needle Gp26 Bound To Xenon Gas
Length = 242
Score = 30.0 bits (66), Expect = 9.8, Method: Composition-based stats.
Identities = 36/177 (20%), Positives = 66/177 (37%), Gaps = 11/177 (6%)
Query: 1210 KANRASM-ACGPMVKWAIAQISYADMLKKVEPLRLELKSLEVQASENKAKGEETKDLITQ 1268
KAN A A VK + AD +++ LR+++ E + + N +T
Sbjct: 57 KANEAGQGAYDAQVKNDEQDVELADHEARIKQLRIDVDDHESRITANTKAITALNVRVTT 116
Query: 1269 LEKSIASYKDEYAQLIAQATAIKTDLDNVQAKFYEYAQLIAQATAIKTDLDNVQAKVERS 1328
E IAS + + L + T + ++ +QA + +Q+ A + S
Sbjct: 117 AEGEIASLQTNVSALDGRVTTAENNISALQADYVSKTATTSQSLA-----SPLNVTTSYS 171
Query: 1329 MALLKSLGIERERWEATSET-----FRSQMATIIGDVLLSSAYLAYAGYFDQHYRQS 1380
+ K +G + W A + T F + + + D S A A R++
Sbjct: 172 VGGKKVVGARQTGWTAATGTANKGVFDADLTFAVSDTYTQSEIQAIANALITERRRT 228
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,732,093
Number of Sequences: 62578
Number of extensions: 1950961
Number of successful extensions: 6341
Number of sequences better than 100.0: 54
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 6220
Number of HSP's gapped (non-prelim): 141
length of query: 1614
length of database: 14,973,337
effective HSP length: 112
effective length of query: 1502
effective length of database: 7,964,601
effective search space: 11962830702
effective search space used: 11962830702
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)