Query psy568
Match_columns 1614
No_of_seqs 351 out of 3108
Neff 8.7
Searched_HMMs 46136
Date Fri Aug 16 23:52:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy568.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/568hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3595|consensus 100.0 5E-161 1E-165 1631.3 115.8 1233 316-1614 39-1281(1395)
2 COG5245 DYN1 Dynein, heavy cha 100.0 6E-139 1E-143 1257.0 71.5 1466 35-1614 1174-2657(3164)
3 PF12780 AAA_8: P-loop contain 100.0 3.8E-64 8.2E-69 566.0 22.6 268 727-1015 1-268 (268)
4 PF12777 MT: Microtubule-bindi 100.0 1.4E-60 3E-65 563.5 35.8 337 1027-1389 1-344 (344)
5 PF12781 AAA_9: ATP-binding dy 100.0 1.8E-52 4E-57 460.5 13.2 207 1405-1614 1-208 (228)
6 PF12775 AAA_7: P-loop contain 100.0 3.1E-50 6.7E-55 458.1 21.4 261 389-656 6-272 (272)
7 COG5271 MDN1 AAA ATPase contai 100.0 3.4E-37 7.3E-42 376.1 41.3 649 37-798 1167-1891(4600)
8 COG5271 MDN1 AAA ATPase contai 100.0 4.5E-33 9.8E-38 340.5 38.7 728 28-940 871-1706(4600)
9 KOG0733|consensus 99.8 2E-18 4.3E-23 201.3 22.1 146 411-583 218-377 (802)
10 TIGR03345 VI_ClpV1 type VI sec 99.8 4E-17 8.6E-22 214.0 26.9 145 415-583 207-366 (852)
11 PRK11034 clpA ATP-dependent Cl 99.8 4E-17 8.6E-22 209.3 25.1 430 415-940 206-669 (758)
12 KOG1808|consensus 99.7 7.6E-17 1.6E-21 214.0 26.3 604 29-797 424-1086(1856)
13 TIGR02639 ClpA ATP-dependent C 99.7 8.1E-17 1.7E-21 210.7 26.2 423 415-940 202-665 (731)
14 TIGR01650 PD_CobS cobaltochela 99.7 5.6E-17 1.2E-21 185.2 21.5 257 395-687 46-316 (327)
15 COG0542 clpA ATP-binding subun 99.7 2.3E-16 5.1E-21 196.4 25.8 471 407-940 181-708 (786)
16 TIGR02640 gas_vesic_GvpN gas v 99.7 9.1E-17 2E-21 184.6 19.5 217 396-637 1-239 (262)
17 PF12774 AAA_6: Hydrolytic ATP 99.7 7.7E-17 1.7E-21 178.7 16.5 215 393-636 9-225 (231)
18 PRK10865 protein disaggregatio 99.7 8.8E-16 1.9E-20 202.3 23.5 156 408-583 190-357 (857)
19 KOG1808|consensus 99.7 8.3E-16 1.8E-20 204.3 20.7 433 394-926 417-877 (1856)
20 CHL00095 clpC Clp protease ATP 99.7 3E-15 6.5E-20 198.2 25.1 463 415-940 199-735 (821)
21 KOG0730|consensus 99.6 4.4E-14 9.5E-19 168.8 21.3 381 414-942 216-620 (693)
22 TIGR03346 chaperone_ClpB ATP-d 99.6 8.4E-14 1.8E-18 184.9 24.6 149 415-583 193-352 (852)
23 PHA02244 ATPase-like protein 99.6 4.1E-14 9E-19 162.8 17.3 195 404-634 107-307 (383)
24 KOG0736|consensus 99.5 2.2E-13 4.7E-18 163.9 17.3 328 416-824 431-773 (953)
25 PF07728 AAA_5: AAA domain (dy 99.5 2.1E-14 4.5E-19 149.3 6.9 132 418-559 1-139 (139)
26 KOG0735|consensus 99.5 2.3E-12 5E-17 153.6 21.5 317 413-826 428-771 (952)
27 TIGR01243 CDC48 AAA family ATP 99.4 2.3E-12 4.9E-17 170.0 21.2 137 414-581 210-360 (733)
28 TIGR02639 ClpA ATP-dependent C 99.4 3.7E-11 8E-16 157.8 31.6 157 419-583 487-665 (731)
29 PRK11034 clpA ATP-dependent Cl 99.4 5.8E-11 1.3E-15 153.1 31.7 158 418-583 490-669 (758)
30 COG0714 MoxR-like ATPases [Gen 99.4 2.9E-12 6.3E-17 153.0 15.3 161 404-575 31-197 (329)
31 PF07726 AAA_3: ATPase family 99.3 2.1E-12 4.5E-17 125.8 8.2 128 418-560 1-130 (131)
32 KOG0735|consensus 99.3 1.8E-10 3.9E-15 137.8 21.6 149 413-583 698-851 (952)
33 PF07728 AAA_5: AAA domain (dy 99.3 6.6E-12 1.4E-16 130.5 7.5 125 45-185 1-139 (139)
34 COG1222 RPT1 ATP-dependent 26S 99.2 2.4E-11 5.2E-16 135.8 10.8 152 410-583 179-338 (406)
35 PF05496 RuvB_N: Holliday junc 99.2 7.9E-11 1.7E-15 126.3 13.4 133 417-578 51-190 (233)
36 CHL00095 clpC Clp protease ATP 99.2 3.1E-09 6.8E-14 141.3 31.4 158 419-583 542-735 (821)
37 PRK11331 5-methylcytosine-spec 99.2 1.2E-10 2.6E-15 138.4 15.1 152 409-566 187-357 (459)
38 TIGR01243 CDC48 AAA family ATP 99.2 1.1E-09 2.4E-14 144.6 24.7 145 414-581 485-636 (733)
39 COG5245 DYN1 Dynein, heavy cha 99.2 4.6E-10 9.9E-15 141.3 19.0 201 1110-1345 2531-2738(3164)
40 COG1223 Predicted ATPase (AAA+ 99.1 1.6E-09 3.4E-14 115.3 16.0 164 396-581 123-298 (368)
41 PLN00020 ribulose bisphosphate 99.1 2.8E-10 6.2E-15 129.8 10.7 148 414-582 146-313 (413)
42 KOG0733|consensus 99.1 2.7E-10 5.9E-15 134.3 10.7 148 412-582 541-694 (802)
43 KOG0730|consensus 99.1 4.3E-10 9.2E-15 135.3 10.5 184 409-636 461-650 (693)
44 KOG1051|consensus 99.0 1.1E-08 2.3E-13 130.5 21.8 160 400-582 194-365 (898)
45 COG2256 MGS1 ATPase related to 99.0 2.9E-09 6.2E-14 121.6 14.2 133 409-578 39-174 (436)
46 TIGR00763 lon ATP-dependent pr 99.0 1.8E-09 3.9E-14 142.7 13.5 198 416-637 347-553 (775)
47 COG0542 clpA ATP-binding subun 99.0 1.4E-09 2.9E-14 136.7 11.6 160 418-584 523-709 (786)
48 PF01078 Mg_chelatase: Magnesi 99.0 2.4E-09 5.2E-14 114.6 10.9 124 405-544 11-160 (206)
49 KOG0741|consensus 99.0 7.6E-09 1.6E-13 120.2 15.6 152 413-584 253-418 (744)
50 PHA02244 ATPase-like protein 98.9 5.3E-09 1.1E-13 121.2 12.0 146 27-193 103-261 (383)
51 TIGR01650 PD_CobS cobaltochela 98.9 4.2E-08 9.1E-13 113.0 19.0 138 35-188 56-214 (327)
52 CHL00195 ycf46 Ycf46; Provisio 98.9 2.3E-09 4.9E-14 132.0 8.9 137 414-583 257-408 (489)
53 KOG0734|consensus 98.9 1.4E-09 3E-14 126.3 6.5 145 416-583 337-487 (752)
54 KOG0727|consensus 98.9 2.8E-09 6E-14 112.5 8.1 150 412-583 185-342 (408)
55 KOG0738|consensus 98.9 6.6E-09 1.4E-13 117.0 10.7 146 408-583 237-398 (491)
56 TIGR02640 gas_vesic_GvpN gas v 98.9 1.3E-08 2.7E-13 117.4 12.5 146 31-193 9-185 (262)
57 PRK10787 DNA-binding ATP-depen 98.9 1.2E-08 2.7E-13 133.0 13.5 198 415-637 348-554 (784)
58 TIGR03689 pup_AAA proteasome A 98.8 8.5E-09 1.9E-13 126.5 10.6 147 413-583 213-381 (512)
59 TIGR02881 spore_V_K stage V sp 98.8 4.1E-08 8.8E-13 113.5 15.5 143 416-582 42-193 (261)
60 PTZ00454 26S protease regulato 98.8 2.2E-08 4.8E-13 120.9 13.8 147 414-582 177-331 (398)
61 COG3829 RocR Transcriptional r 98.8 4.8E-08 1E-12 116.4 15.7 216 391-637 243-478 (560)
62 CHL00206 ycf2 Ycf2; Provisiona 98.8 5.9E-08 1.3E-12 129.4 16.9 157 409-579 1623-1816(2281)
63 CHL00176 ftsH cell division pr 98.8 5E-08 1.1E-12 124.1 15.8 139 415-582 215-368 (638)
64 CHL00181 cbbX CbbX; Provisiona 98.8 9.5E-09 2.1E-13 119.2 8.5 143 416-583 59-212 (287)
65 KOG0736|consensus 98.8 1E-08 2.2E-13 124.5 8.7 157 406-583 695-860 (953)
66 PRK03992 proteasome-activating 98.8 1.7E-08 3.7E-13 122.9 9.9 140 415-582 164-317 (389)
67 COG2255 RuvB Holliday junction 98.8 4.4E-08 9.4E-13 106.8 11.5 156 396-580 28-194 (332)
68 KOG2028|consensus 98.8 2.6E-08 5.7E-13 110.7 10.0 141 408-581 152-295 (554)
69 COG0466 Lon ATP-dependent Lon 98.7 3.4E-08 7.5E-13 120.3 10.9 195 419-637 353-556 (782)
70 TIGR01241 FtsH_fam ATP-depende 98.7 1.1E-07 2.5E-12 120.0 16.1 139 415-582 87-240 (495)
71 PRK00080 ruvB Holliday junctio 98.7 5.1E-08 1.1E-12 116.7 12.2 137 417-582 52-195 (328)
72 KOG0731|consensus 98.7 3.6E-08 7.8E-13 123.1 10.5 149 412-583 340-498 (774)
73 PRK13407 bchI magnesium chelat 98.7 4.5E-08 9.7E-13 114.9 10.6 154 411-578 23-214 (334)
74 TIGR02880 cbbX_cfxQ probable R 98.7 2.3E-08 5E-13 116.2 7.9 184 416-636 58-251 (284)
75 TIGR03345 VI_ClpV1 type VI sec 98.7 7.6E-08 1.6E-12 127.3 13.7 158 419-583 599-783 (852)
76 TIGR03346 chaperone_ClpB ATP-d 98.7 8.1E-08 1.8E-12 128.3 13.6 201 418-636 597-823 (852)
77 KOG2004|consensus 98.7 7.6E-08 1.7E-12 116.2 11.7 198 415-636 437-643 (906)
78 PRK13531 regulatory ATPase Rav 98.7 1.6E-07 3.4E-12 113.0 13.7 158 405-578 28-192 (498)
79 KOG0652|consensus 98.7 3.7E-08 8.1E-13 104.6 7.3 150 408-583 197-358 (424)
80 KOG0739|consensus 98.7 2.6E-08 5.6E-13 108.1 6.0 140 417-581 167-313 (439)
81 TIGR01242 26Sp45 26S proteasom 98.7 1.1E-07 2.5E-12 115.4 12.4 145 416-582 156-308 (364)
82 KOG0737|consensus 98.6 1.8E-08 3.9E-13 114.1 4.6 153 410-582 121-276 (386)
83 PLN03025 replication factor C 98.6 2.2E-07 4.8E-12 110.7 14.2 166 375-582 2-173 (319)
84 PTZ00361 26 proteosome regulat 98.6 2.8E-08 6.1E-13 120.5 6.4 140 415-583 216-370 (438)
85 TIGR00635 ruvB Holliday juncti 98.6 1.4E-07 3.1E-12 112.2 12.1 136 417-581 31-173 (305)
86 COG0464 SpoVK ATPases of the A 98.6 6.6E-08 1.4E-12 122.7 9.6 148 413-582 273-425 (494)
87 PRK13342 recombination factor 98.6 1.3E-07 2.9E-12 116.5 11.8 139 408-582 26-166 (413)
88 PF07724 AAA_2: AAA domain (Cd 98.6 2.1E-08 4.5E-13 106.9 3.9 120 417-544 4-131 (171)
89 TIGR02902 spore_lonB ATP-depen 98.6 3.3E-07 7.3E-12 115.7 14.8 187 414-636 84-310 (531)
90 PRK14956 DNA polymerase III su 98.6 3.8E-07 8.2E-12 110.4 14.5 139 409-581 30-194 (484)
91 PF00004 AAA: ATPase family as 98.6 4.7E-08 1E-12 100.5 5.7 122 419-565 1-131 (132)
92 KOG0740|consensus 98.6 9.4E-08 2E-12 112.8 7.8 144 416-583 186-336 (428)
93 PRK10733 hflB ATP-dependent me 98.6 5.9E-07 1.3E-11 116.1 15.9 140 415-583 184-338 (644)
94 PRK11608 pspF phage shock prot 98.6 5.8E-07 1.3E-11 106.9 14.6 218 395-636 8-238 (326)
95 PRK13341 recombination factor 98.6 2.8E-07 6E-12 119.0 12.7 140 408-582 42-183 (725)
96 PRK09862 putative ATP-dependen 98.6 2.1E-07 4.7E-12 114.4 11.0 151 408-572 202-393 (506)
97 TIGR02974 phageshock_pspF psp 98.6 5.4E-07 1.2E-11 107.0 14.0 212 400-637 6-232 (329)
98 TIGR03185 DNA_S_dndD DNA sulfu 98.6 0.00085 1.8E-08 88.0 44.6 25 759-783 30-55 (650)
99 PRK14962 DNA polymerase III su 98.5 6.7E-07 1.4E-11 110.5 13.4 140 408-581 25-190 (472)
100 CHL00195 ycf46 Ycf46; Provisio 98.5 3.5E-05 7.6E-10 95.5 28.1 70 753-824 256-327 (489)
101 KOG0726|consensus 98.5 6E-08 1.3E-12 104.9 3.5 148 410-583 213-372 (440)
102 KOG0742|consensus 98.5 4.6E-07 9.9E-12 102.5 10.4 168 391-584 353-532 (630)
103 PRK15424 propionate catabolism 98.5 1.1E-06 2.5E-11 109.6 14.8 221 394-637 220-464 (538)
104 TIGR02329 propionate_PrpR prop 98.5 1.3E-06 2.9E-11 109.1 15.4 220 395-637 214-449 (526)
105 TIGR01817 nifA Nif-specific re 98.5 2.3E-06 4.9E-11 109.6 17.8 215 397-637 200-427 (534)
106 smart00350 MCM minichromosome 98.5 5.8E-07 1.2E-11 113.4 12.0 150 417-581 237-401 (509)
107 PF00158 Sigma54_activat: Sigm 98.5 7.6E-07 1.6E-11 94.7 11.0 152 400-563 6-166 (168)
108 PRK08084 DNA replication initi 98.5 1.3E-06 2.9E-11 99.0 13.6 150 394-580 22-180 (235)
109 PRK04195 replication factor C 98.5 1.1E-06 2.3E-11 110.8 14.1 135 416-581 39-174 (482)
110 PRK05342 clpX ATP-dependent pr 98.5 1.8E-07 3.9E-12 113.3 6.6 120 415-542 107-239 (412)
111 COG0606 Predicted ATPase with 98.5 3.2E-07 6.9E-12 108.1 8.2 130 406-544 188-337 (490)
112 TIGR00368 Mg chelatase-related 98.5 6.6E-07 1.4E-11 111.0 11.4 154 406-572 201-396 (499)
113 cd00009 AAA The AAA+ (ATPases 98.5 1E-06 2.2E-11 92.2 11.5 138 407-565 8-150 (151)
114 PHA02544 44 clamp loader, smal 98.4 8E-07 1.7E-11 106.4 11.8 142 408-583 32-176 (316)
115 KOG0744|consensus 98.4 1.7E-06 3.7E-11 95.7 12.9 150 413-584 174-344 (423)
116 PRK07003 DNA polymerase III su 98.4 1.7E-06 3.7E-11 108.3 14.3 141 408-582 27-193 (830)
117 COG0465 HflB ATP-dependent Zn 98.4 5.5E-07 1.2E-11 111.0 9.8 146 414-582 181-335 (596)
118 COG2204 AtoC Response regulato 98.4 2.5E-06 5.5E-11 102.6 14.7 218 393-637 141-373 (464)
119 PRK05022 anaerobic nitric oxid 98.4 4.3E-06 9.4E-11 106.0 17.6 211 400-636 194-418 (509)
120 COG1221 PspF Transcriptional r 98.4 1.4E-06 3E-11 102.9 12.1 162 395-569 80-249 (403)
121 PRK14960 DNA polymerase III su 98.4 1.5E-06 3.2E-11 108.0 12.7 142 407-582 25-192 (702)
122 KOG0743|consensus 98.4 1.7E-06 3.7E-11 101.3 11.7 136 416-582 235-385 (457)
123 PRK10865 protein disaggregatio 98.4 7.1E-05 1.5E-09 99.9 28.4 155 746-939 187-356 (857)
124 PRK00411 cdc6 cell division co 98.4 4.1E-06 8.9E-11 103.7 15.7 162 405-581 42-221 (394)
125 TIGR00382 clpX endopeptidase C 98.4 7.1E-07 1.5E-11 107.3 8.4 117 416-542 116-247 (413)
126 KOG0728|consensus 98.4 1.1E-06 2.3E-11 93.3 8.5 144 412-581 177-332 (404)
127 PTZ00112 origin recognition co 98.4 3.1E-06 6.7E-11 106.0 13.9 163 403-582 765-951 (1164)
128 PRK08691 DNA polymerase III su 98.4 5.6E-06 1.2E-10 104.0 16.2 141 408-582 27-193 (709)
129 PRK11388 DNA-binding transcrip 98.4 4.5E-06 9.8E-11 109.4 16.3 219 392-636 324-552 (638)
130 COG0464 SpoVK ATPases of the A 98.3 1E-05 2.2E-10 102.9 18.8 70 753-824 273-344 (494)
131 PRK12323 DNA polymerase III su 98.3 1.8E-06 3.9E-11 106.8 11.3 140 408-581 27-197 (700)
132 PRK06893 DNA replication initi 98.3 5.1E-06 1.1E-10 93.9 14.1 132 416-581 38-175 (229)
133 KOG0991|consensus 98.3 7.2E-07 1.6E-11 93.9 6.4 163 374-578 15-183 (333)
134 PRK10923 glnG nitrogen regulat 98.3 8E-06 1.7E-10 103.5 17.3 217 395-637 140-370 (469)
135 PRK06645 DNA polymerase III su 98.3 4.5E-06 9.8E-11 103.5 14.2 141 408-582 32-202 (507)
136 KOG0996|consensus 98.3 0.037 8E-07 71.8 58.3 24 760-783 111-134 (1293)
137 PRK15429 formate hydrogenlyase 98.3 4.8E-06 1E-10 109.8 15.1 220 392-637 375-608 (686)
138 TIGR03420 DnaA_homol_Hda DnaA 98.3 4.1E-06 8.9E-11 95.1 12.6 166 414-636 36-207 (226)
139 KOG0729|consensus 98.3 9.7E-07 2.1E-11 94.4 6.7 151 406-582 201-363 (435)
140 PRK14949 DNA polymerase III su 98.3 4.2E-06 9.1E-11 107.0 13.0 140 409-582 28-193 (944)
141 PRK14961 DNA polymerase III su 98.3 5.5E-06 1.2E-10 100.4 13.6 140 409-582 28-193 (363)
142 TIGR02031 BchD-ChlD magnesium 98.3 2E-06 4.4E-11 109.7 10.1 150 417-580 17-174 (589)
143 CHL00081 chlI Mg-protoporyphyr 98.3 2.2E-06 4.8E-11 100.8 9.3 83 486-578 145-230 (350)
144 KOG0250|consensus 98.3 0.05 1.1E-06 70.7 55.4 70 1230-1299 359-429 (1074)
145 PRK11331 5-methylcytosine-spec 98.3 4.3E-06 9.4E-11 100.1 11.5 157 32-193 183-358 (459)
146 PRK14964 DNA polymerase III su 98.3 5.9E-06 1.3E-10 101.6 13.0 140 408-581 24-189 (491)
147 PF05673 DUF815: Protein of un 98.3 7.7E-06 1.7E-10 89.7 12.4 136 416-581 52-208 (249)
148 TIGR02928 orc1/cdc6 family rep 98.3 4.9E-06 1.1E-10 101.9 12.5 163 405-581 27-213 (365)
149 PRK07994 DNA polymerase III su 98.2 6.5E-06 1.4E-10 104.2 13.4 140 408-581 27-192 (647)
150 TIGR02030 BchI-ChlI magnesium 98.2 3.1E-06 6.8E-11 99.8 9.9 149 416-578 25-217 (337)
151 PRK10820 DNA-binding transcrip 98.2 8.1E-06 1.8E-10 103.4 14.3 221 391-637 202-436 (520)
152 PRK14951 DNA polymerase III su 98.2 2.1E-05 4.5E-10 99.6 17.3 140 408-581 27-197 (618)
153 PF00308 Bac_DnaA: Bacterial d 98.2 1.6E-05 3.4E-10 88.9 14.6 161 394-582 8-181 (219)
154 PRK12402 replication factor C 98.2 9.6E-06 2.1E-10 98.2 14.0 148 405-581 23-198 (337)
155 PRK14957 DNA polymerase III su 98.2 9.9E-06 2.1E-10 101.1 14.0 140 409-582 28-193 (546)
156 PRK14958 DNA polymerase III su 98.2 4.3E-06 9.2E-11 104.6 10.8 140 408-581 27-192 (509)
157 PRK08903 DnaA regulatory inact 98.2 1.3E-05 2.8E-10 90.9 13.7 159 415-635 41-204 (227)
158 PRK00440 rfc replication facto 98.2 1.4E-05 3E-10 95.9 14.6 143 407-581 27-175 (319)
159 KOG0732|consensus 98.2 1.1E-05 2.4E-10 104.0 13.8 155 410-584 293-455 (1080)
160 COG2256 MGS1 ATPase related to 98.2 1.1E-05 2.4E-10 92.9 11.9 137 750-938 40-177 (436)
161 COG1239 ChlI Mg-chelatase subu 98.2 2.3E-05 5E-10 91.6 14.6 146 417-576 39-228 (423)
162 TIGR02442 Cob-chelat-sub cobal 98.2 9.5E-06 2.1E-10 105.0 12.9 145 417-577 26-211 (633)
163 PTZ00111 DNA replication licen 98.2 8.3E-06 1.8E-10 104.9 11.8 151 415-581 491-658 (915)
164 PRK06620 hypothetical protein; 98.2 2.8E-05 6.1E-10 86.5 14.7 138 393-581 15-161 (214)
165 PRK05896 DNA polymerase III su 98.2 2.7E-05 5.9E-10 97.1 15.9 140 408-581 27-192 (605)
166 PRK12422 chromosomal replicati 98.1 2.2E-05 4.7E-10 96.8 14.6 161 394-582 111-286 (445)
167 KOG0989|consensus 98.1 5.4E-06 1.2E-10 91.9 8.0 147 410-581 50-202 (346)
168 TIGR00362 DnaA chromosomal rep 98.1 1.7E-05 3.7E-10 98.1 13.3 161 394-582 110-283 (405)
169 TIGR02168 SMC_prok_B chromosom 98.1 0.0075 1.6E-07 86.3 42.1 29 756-784 22-50 (1179)
170 PRK08727 hypothetical protein; 98.1 1.2E-05 2.6E-10 91.0 10.1 131 416-581 41-176 (233)
171 PF12128 DUF3584: Protein of u 98.1 0.021 4.5E-07 80.1 43.6 34 755-788 15-48 (1201)
172 PRK14086 dnaA chromosomal repl 98.1 2.2E-05 4.9E-10 97.9 13.0 139 417-582 315-461 (617)
173 PRK14088 dnaA chromosomal repl 98.1 1.7E-05 3.6E-10 98.2 11.9 162 394-581 105-277 (440)
174 TIGR02397 dnaX_nterm DNA polym 98.1 1.4E-05 2.9E-10 97.6 11.0 141 408-582 25-191 (355)
175 KOG1969|consensus 98.1 5.5E-05 1.2E-09 92.7 15.6 145 417-581 327-482 (877)
176 TIGR02915 PEP_resp_reg putativ 98.1 4.7E-05 1E-09 95.9 15.8 210 401-636 147-370 (445)
177 PRK14963 DNA polymerase III su 98.0 4.3E-05 9.4E-10 95.5 14.6 140 408-581 25-189 (504)
178 TIGR00678 holB DNA polymerase 98.0 4.1E-05 8.8E-10 84.0 12.5 136 410-579 5-167 (188)
179 TIGR02903 spore_lon_C ATP-depe 98.0 3.9E-05 8.4E-10 98.7 14.1 153 415-581 174-367 (615)
180 PRK14969 DNA polymerase III su 98.0 3.1E-05 6.7E-10 97.7 12.8 140 408-581 27-192 (527)
181 PF13173 AAA_14: AAA domain 98.0 1.4E-05 3E-10 81.6 8.0 122 415-572 1-127 (128)
182 PRK14952 DNA polymerase III su 98.0 4.6E-05 1E-09 96.2 14.1 141 407-581 23-191 (584)
183 PRK00149 dnaA chromosomal repl 98.0 1.2E-05 2.5E-10 100.7 8.8 163 394-582 122-295 (450)
184 PRK14959 DNA polymerase III su 98.0 3.5E-05 7.5E-10 96.7 12.7 142 406-581 25-192 (624)
185 TIGR02169 SMC_prok_A chromosom 98.0 0.045 9.7E-07 78.3 46.1 30 755-784 21-50 (1164)
186 PRK05642 DNA replication initi 98.0 7.4E-05 1.6E-09 84.7 13.7 128 417-579 46-178 (234)
187 PRK05563 DNA polymerase III su 98.0 3.9E-05 8.4E-10 97.5 12.6 140 408-581 27-192 (559)
188 KOG0651|consensus 98.0 8.7E-06 1.9E-10 89.9 5.7 136 412-575 162-311 (388)
189 PF00493 MCM: MCM2/3/5 family 98.0 1.3E-05 2.9E-10 95.3 7.8 154 414-583 55-224 (331)
190 PRK09087 hypothetical protein; 98.0 0.00012 2.6E-09 82.3 14.9 145 393-582 20-168 (226)
191 PRK08451 DNA polymerase III su 98.0 8.3E-05 1.8E-09 92.4 14.8 140 408-581 25-190 (535)
192 PRK07764 DNA polymerase III su 98.0 5.6E-05 1.2E-09 99.2 13.9 140 408-581 26-193 (824)
193 COG1196 Smc Chromosome segrega 98.0 0.065 1.4E-06 75.3 44.8 31 754-784 21-51 (1163)
194 PRK07133 DNA polymerase III su 98.0 5.7E-05 1.2E-09 96.3 13.5 141 407-581 28-191 (725)
195 PRK11361 acetoacetate metaboli 97.9 9.8E-05 2.1E-09 93.4 15.7 212 399-636 149-374 (457)
196 PRK14087 dnaA chromosomal repl 97.9 3.6E-05 7.8E-10 95.3 11.2 164 394-582 115-290 (450)
197 TIGR03015 pepcterm_ATPase puta 97.9 5.2E-05 1.1E-09 88.6 12.0 172 394-581 20-206 (269)
198 KOG1051|consensus 97.9 1.7E-05 3.8E-10 101.8 8.1 117 418-544 593-712 (898)
199 PRK15115 response regulator Gl 97.9 0.00014 3.1E-09 91.5 16.3 209 402-636 143-365 (444)
200 PRK07940 DNA polymerase III su 97.9 7E-05 1.5E-09 90.6 12.4 127 417-577 37-186 (394)
201 PRK14954 DNA polymerase III su 97.9 0.00028 6.2E-09 89.8 18.3 140 408-581 27-200 (620)
202 PRK14970 DNA polymerase III su 97.8 0.00015 3.3E-09 88.5 14.5 141 407-581 27-181 (367)
203 PRK14953 DNA polymerase III su 97.8 0.00013 2.7E-09 91.1 13.9 141 407-581 26-192 (486)
204 PRK14948 DNA polymerase III su 97.8 0.00014 3E-09 93.2 14.5 140 408-581 27-194 (620)
205 PF06068 TIP49: TIP49 C-termin 97.8 0.00016 3.5E-09 83.5 13.0 61 394-454 24-89 (398)
206 PRK14965 DNA polymerase III su 97.8 9.6E-05 2.1E-09 94.5 12.4 141 407-581 26-192 (576)
207 PF12780 AAA_8: P-loop contain 97.8 5.1E-05 1.1E-09 86.8 8.9 217 396-632 10-262 (268)
208 PF13401 AAA_22: AAA domain; P 97.8 1.4E-05 3E-10 82.1 3.7 109 415-542 3-125 (131)
209 TIGR00764 lon_rel lon-related 97.8 0.0003 6.4E-09 90.3 16.1 133 487-634 219-367 (608)
210 PRK06305 DNA polymerase III su 97.8 0.00017 3.7E-09 89.4 13.2 140 408-581 28-194 (451)
211 PF00004 AAA: ATPase family as 97.8 5.9E-05 1.3E-09 77.4 7.8 68 760-827 1-70 (132)
212 TIGR01818 ntrC nitrogen regula 97.8 0.00032 6.9E-09 88.9 16.1 211 401-637 142-366 (463)
213 PRK09111 DNA polymerase III su 97.8 0.00021 4.5E-09 90.9 13.9 139 409-581 36-205 (598)
214 COG1474 CDC6 Cdc6-related prot 97.8 0.00019 4.2E-09 86.0 12.9 162 404-582 28-205 (366)
215 PRK06647 DNA polymerase III su 97.8 0.00018 3.9E-09 91.1 13.1 139 409-581 28-192 (563)
216 KOG0979|consensus 97.7 0.34 7.3E-06 62.5 43.3 32 756-787 40-72 (1072)
217 PRK14971 DNA polymerase III su 97.7 0.00079 1.7E-08 86.4 18.7 141 408-582 28-195 (614)
218 PRK14955 DNA polymerase III su 97.7 0.00015 3.3E-09 89.0 11.2 141 407-581 26-200 (397)
219 TIGR02881 spore_V_K stage V sp 97.7 0.00092 2E-08 77.4 16.8 143 757-940 42-194 (261)
220 COG3604 FhlA Transcriptional r 97.7 0.00029 6.3E-09 83.6 12.4 160 395-567 225-394 (550)
221 COG1224 TIP49 DNA helicase TIP 97.7 0.00043 9.2E-09 78.4 12.9 61 394-454 39-104 (450)
222 PRK07003 DNA polymerase III su 97.7 0.0033 7.2E-08 79.7 21.9 130 758-938 38-192 (830)
223 COG1219 ClpX ATP-dependent pro 97.7 9.2E-05 2E-09 82.3 7.3 72 415-497 96-174 (408)
224 PRK13342 recombination factor 97.6 0.00037 8.1E-09 86.2 13.6 130 758-939 37-166 (413)
225 PRK13406 bchD magnesium chelat 97.6 0.00014 3.1E-09 91.9 9.9 142 417-572 26-174 (584)
226 PRK04132 replication factor C 97.6 0.0002 4.4E-09 93.2 11.3 132 418-581 566-703 (846)
227 KOG0480|consensus 97.6 0.00032 7E-09 84.8 12.1 207 413-632 375-617 (764)
228 PRK14956 DNA polymerase III su 97.6 0.00032 6.9E-09 85.5 12.1 133 750-883 31-191 (484)
229 smart00763 AAA_PrkA PrkA AAA d 97.6 0.00036 7.7E-09 81.9 12.0 88 487-581 238-328 (361)
230 PF05496 RuvB_N: Holliday junc 97.6 0.00025 5.3E-09 77.1 9.7 82 756-844 49-130 (233)
231 PRK09112 DNA polymerase III su 97.6 0.00069 1.5E-08 81.0 14.0 150 406-578 32-211 (351)
232 PRK14950 DNA polymerase III su 97.6 0.00057 1.2E-08 88.0 14.2 140 408-581 27-193 (585)
233 COG2607 Predicted ATPase (AAA+ 97.6 0.00047 1E-08 74.2 10.7 96 417-542 86-183 (287)
234 smart00382 AAA ATPases associa 97.6 0.00014 3.1E-09 75.2 7.0 40 416-455 2-43 (148)
235 PF05729 NACHT: NACHT domain 97.6 0.00016 3.5E-09 77.4 7.5 150 417-581 1-164 (166)
236 KOG0478|consensus 97.5 0.0017 3.8E-08 79.4 16.6 151 417-580 463-626 (804)
237 KOG0994|consensus 97.5 0.63 1.4E-05 60.2 44.8 26 1130-1155 1475-1504(1758)
238 PRK10365 transcriptional regul 97.5 0.001 2.2E-08 83.8 15.6 205 406-636 152-370 (441)
239 PRK14960 DNA polymerase III su 97.5 0.00058 1.2E-08 85.5 12.7 124 760-884 40-189 (702)
240 PLN00020 ribulose bisphosphate 97.5 0.00028 6.2E-09 81.7 9.1 72 753-825 145-222 (413)
241 COG0593 DnaA ATPase involved i 97.5 0.00069 1.5E-08 80.9 12.5 162 393-580 86-257 (408)
242 PRK13341 recombination factor 97.5 0.00074 1.6E-08 87.8 13.9 141 748-939 42-183 (725)
243 PRK04195 replication factor C 97.5 0.00044 9.6E-09 87.3 11.3 95 756-850 38-137 (482)
244 KOG1969|consensus 97.5 0.00028 6.1E-09 86.7 8.8 82 759-840 328-412 (877)
245 TIGR00390 hslU ATP-dependent p 97.5 0.00095 2.1E-08 79.4 12.8 89 485-576 247-342 (441)
246 TIGR02880 cbbX_cfxQ probable R 97.5 0.00091 2E-08 78.0 12.5 143 756-940 57-211 (284)
247 PRK06645 DNA polymerase III su 97.4 0.00073 1.6E-08 84.2 12.1 125 758-886 44-201 (507)
248 PRK08181 transposase; Validate 97.4 0.00035 7.6E-09 80.1 8.6 95 408-512 98-194 (269)
249 KOG1514|consensus 97.4 0.0033 7.2E-08 77.6 17.2 208 407-637 410-658 (767)
250 PRK12323 DNA polymerase III su 97.4 0.0012 2.6E-08 82.5 13.3 124 758-885 38-196 (700)
251 PF12128 DUF3584: Protein of u 97.4 0.63 1.4E-05 65.7 41.5 63 1106-1175 502-564 (1201)
252 PRK14963 DNA polymerase III su 97.4 0.02 4.4E-07 71.9 24.0 131 758-939 36-190 (504)
253 PRK14964 DNA polymerase III su 97.4 0.0012 2.5E-08 81.7 12.7 102 759-864 37-167 (491)
254 PRK02224 chromosome segregatio 97.4 0.56 1.2E-05 64.6 40.4 23 418-440 25-47 (880)
255 COG1241 MCM2 Predicted ATPase 97.4 0.00082 1.8E-08 85.0 11.5 153 416-584 319-487 (682)
256 CHL00181 cbbX CbbX; Provisiona 97.4 0.00078 1.7E-08 78.5 10.6 143 756-940 58-212 (287)
257 PRK08116 hypothetical protein; 97.4 0.00016 3.5E-09 83.4 4.7 132 415-568 113-250 (268)
258 PF14532 Sigma54_activ_2: Sigm 97.4 0.00022 4.8E-09 73.8 5.2 127 401-567 6-136 (138)
259 PRK14958 DNA polymerase III su 97.3 0.0014 3E-08 82.4 13.1 128 758-886 38-192 (509)
260 PLN03025 replication factor C 97.3 0.0012 2.6E-08 78.9 12.0 82 758-839 35-123 (319)
261 PRK14962 DNA polymerase III su 97.3 0.00062 1.3E-08 84.6 9.8 78 749-827 26-129 (472)
262 PF12777 MT: Microtubule-bindi 97.3 0.046 1E-06 65.7 25.1 59 1237-1295 222-280 (344)
263 PRK07471 DNA polymerase III su 97.3 0.0047 1E-07 74.4 16.6 74 483-579 139-212 (365)
264 PRK14961 DNA polymerase III su 97.3 0.0013 2.9E-08 79.8 12.1 98 736-842 18-143 (363)
265 PF12775 AAA_7: P-loop contain 97.3 0.00066 1.4E-08 78.4 9.0 192 756-1004 32-244 (272)
266 PRK14949 DNA polymerase III su 97.3 0.0012 2.6E-08 85.3 11.9 129 758-887 38-193 (944)
267 PF03215 Rad17: Rad17 cell cyc 97.3 0.0034 7.3E-08 78.6 15.7 187 373-581 6-227 (519)
268 PRK05201 hslU ATP-dependent pr 97.3 0.0011 2.4E-08 78.9 10.6 89 485-576 249-344 (443)
269 PRK14957 DNA polymerase III su 97.3 0.0015 3.1E-08 82.1 12.1 124 737-864 19-170 (546)
270 PRK07994 DNA polymerase III su 97.3 0.001 2.2E-08 84.7 10.9 128 758-886 38-192 (647)
271 TIGR00602 rad24 checkpoint pro 97.3 0.00081 1.8E-08 85.6 9.7 24 417-440 111-134 (637)
272 COG3283 TyrR Transcriptional r 97.2 0.0034 7.3E-08 71.1 13.0 148 409-569 220-372 (511)
273 PRK13765 ATP-dependent proteas 97.2 0.0051 1.1E-07 78.7 16.4 36 406-441 40-75 (637)
274 PRK04778 septation ring format 97.2 1.4 3E-05 57.1 39.2 85 1000-1084 62-148 (569)
275 PRK06526 transposase; Provisio 97.2 0.00032 7E-09 80.0 5.0 128 412-568 94-235 (254)
276 TIGR00763 lon ATP-dependent pr 97.2 0.0023 5.1E-08 85.4 13.9 144 759-937 349-505 (775)
277 TIGR02902 spore_lonB ATP-depen 97.2 0.0048 1E-07 78.4 16.1 180 736-941 67-280 (531)
278 PHA02544 44 clamp loader, smal 97.2 0.0023 5E-08 76.6 12.6 81 759-840 44-126 (316)
279 COG0470 HolB ATPase involved i 97.2 0.0013 2.8E-08 79.1 10.6 126 416-571 23-172 (325)
280 PF13177 DNA_pol3_delta2: DNA 97.2 0.0018 3.8E-08 68.9 10.2 138 28-192 4-160 (162)
281 PRK07764 DNA polymerase III su 97.2 0.0016 3.5E-08 85.8 11.9 128 758-886 37-193 (824)
282 cd00009 AAA The AAA+ (ATPases 97.2 0.0016 3.5E-08 67.7 10.0 73 755-827 17-96 (151)
283 PRK12402 replication factor C 97.2 0.0097 2.1E-07 72.0 18.1 47 886-939 153-199 (337)
284 PRK08058 DNA polymerase III su 97.2 0.0023 5E-08 76.5 12.4 137 407-577 16-179 (329)
285 COG3284 AcoR Transcriptional a 97.2 0.002 4.4E-08 79.3 11.9 204 399-637 319-539 (606)
286 PRK14955 DNA polymerase III su 97.2 0.0033 7.1E-08 77.3 13.8 123 760-886 41-200 (397)
287 PRK05707 DNA polymerase III su 97.2 0.002 4.3E-08 76.4 11.4 128 417-578 23-176 (328)
288 COG2812 DnaX DNA polymerase II 97.2 0.00095 2.1E-08 82.1 8.9 141 407-581 26-192 (515)
289 KOG0933|consensus 97.2 1.5 3.3E-05 56.7 40.1 56 761-826 29-88 (1174)
290 KOG0976|consensus 97.2 1.2 2.7E-05 55.5 37.1 11 1162-1172 274-284 (1265)
291 KOG2227|consensus 97.2 0.0031 6.6E-08 74.5 12.1 148 414-582 173-340 (529)
292 PRK10787 DNA-binding ATP-depen 97.2 0.0018 3.9E-08 85.5 11.6 145 758-938 350-507 (784)
293 PRK14959 DNA polymerase III su 97.1 0.0035 7.6E-08 79.2 13.4 72 759-831 40-135 (624)
294 TIGR00635 ruvB Holliday juncti 97.1 0.0014 3.1E-08 77.9 9.7 80 757-843 30-109 (305)
295 PRK14953 DNA polymerase III su 97.1 0.0031 6.8E-08 78.8 12.9 72 758-830 38-134 (486)
296 PF07724 AAA_2: AAA domain (Cd 97.1 0.00033 7.1E-09 74.9 3.7 91 755-845 1-109 (171)
297 PRK05896 DNA polymerase III su 97.1 0.0035 7.6E-08 78.7 12.9 122 760-885 41-191 (605)
298 KOG0995|consensus 97.1 1.3 2.7E-05 54.3 40.4 115 1219-1348 421-535 (581)
299 PRK14969 DNA polymerase III su 97.1 0.0034 7.4E-08 79.5 12.8 122 758-886 38-192 (527)
300 KOG0994|consensus 97.1 0.61 1.3E-05 60.3 31.4 53 1235-1287 1590-1642(1758)
301 PF07693 KAP_NTPase: KAP famil 97.1 0.0077 1.7E-07 72.5 15.3 85 484-584 171-267 (325)
302 PRK14951 DNA polymerase III su 97.1 0.0024 5.1E-08 81.3 10.9 143 737-885 19-196 (618)
303 PRK08691 DNA polymerase III su 97.0 0.0042 9.2E-08 78.8 12.9 123 760-886 41-192 (709)
304 KOG0731|consensus 97.0 0.0012 2.6E-08 83.6 7.9 94 753-864 341-442 (774)
305 KOG0482|consensus 97.0 0.0015 3.2E-08 76.9 7.8 152 416-583 375-542 (721)
306 KOG0933|consensus 97.0 2.1 4.5E-05 55.5 35.2 33 1225-1257 673-705 (1174)
307 KOG2028|consensus 97.0 0.0032 6.8E-08 71.4 9.9 132 759-940 164-297 (554)
308 KOG0745|consensus 97.0 0.00085 1.8E-08 77.8 5.6 79 415-498 225-304 (564)
309 PRK09111 DNA polymerase III su 97.0 0.0035 7.6E-08 80.0 11.7 146 736-886 26-205 (598)
310 PRK03992 proteasome-activating 96.9 0.014 3.1E-07 71.4 16.0 153 754-942 163-320 (389)
311 PRK08699 DNA polymerase III su 96.9 0.0038 8.2E-08 74.0 10.4 141 41-207 19-183 (325)
312 PHA02562 46 endonuclease subun 96.9 1.4 3.1E-05 57.3 35.5 26 757-782 27-52 (562)
313 PRK05342 clpX ATP-dependent pr 96.9 0.0039 8.5E-08 76.1 10.5 73 755-827 106-185 (412)
314 PRK00080 ruvB Holliday junctio 96.9 0.0035 7.6E-08 75.2 9.8 78 755-839 49-126 (328)
315 KOG2035|consensus 96.9 0.014 3E-07 64.4 13.1 146 408-582 24-201 (351)
316 PRK00440 rfc replication facto 96.9 0.007 1.5E-07 72.6 12.4 82 758-839 39-126 (319)
317 PRK09112 DNA polymerase III su 96.8 0.0074 1.6E-07 72.3 12.1 167 27-207 29-211 (351)
318 KOG0734|consensus 96.8 0.0023 5E-08 75.9 7.5 64 755-826 336-407 (752)
319 PF13177 DNA_pol3_delta2: DNA 96.8 0.011 2.4E-07 62.9 12.2 129 406-568 6-162 (162)
320 TIGR01242 26Sp45 26S proteasom 96.8 0.029 6.3E-07 68.4 17.6 152 754-942 154-311 (364)
321 TIGR00606 rad50 rad50. This fa 96.8 3.5 7.6E-05 59.1 40.4 128 1228-1356 735-869 (1311)
322 PRK14952 DNA polymerase III su 96.8 0.0073 1.6E-07 76.7 12.3 106 757-863 34-168 (584)
323 PTZ00454 26S protease regulato 96.8 0.013 2.8E-07 71.5 13.9 69 754-824 177-247 (398)
324 PRK14954 DNA polymerase III su 96.8 0.0073 1.6E-07 77.2 12.2 123 760-886 41-200 (620)
325 TIGR00634 recN DNA repair prot 96.8 0.66 1.4E-05 60.0 30.2 30 755-784 20-49 (563)
326 TIGR00678 holB DNA polymerase 96.8 0.0031 6.8E-08 69.1 7.8 154 34-207 5-166 (188)
327 PRK03918 chromosome segregatio 96.8 4.6 0.0001 55.8 40.9 67 1315-1384 390-456 (880)
328 PRK05564 DNA polymerase III su 96.8 0.011 2.3E-07 70.6 12.9 137 408-578 15-163 (313)
329 COG1222 RPT1 ATP-dependent 26S 96.8 0.003 6.6E-08 72.2 7.5 157 745-943 173-341 (406)
330 PF01637 Arch_ATPase: Archaeal 96.8 0.0025 5.3E-08 72.5 7.1 163 409-581 11-205 (234)
331 PTZ00361 26 proteosome regulat 96.8 0.014 3E-07 71.6 13.9 147 755-942 216-372 (438)
332 TIGR02680 conserved hypothetic 96.8 5.8 0.00013 56.7 46.1 25 754-778 21-45 (1353)
333 PF03969 AFG1_ATPase: AFG1-lik 96.7 0.0017 3.6E-08 77.8 5.6 131 415-569 61-203 (362)
334 COG0470 HolB ATPase involved i 96.7 0.006 1.3E-07 73.4 10.5 126 41-192 22-167 (325)
335 PF13401 AAA_22: AAA domain; P 96.7 0.0026 5.6E-08 65.1 6.2 92 756-847 3-120 (131)
336 PRK14950 DNA polymerase III su 96.7 0.009 1.9E-07 77.1 12.4 101 757-861 37-168 (585)
337 PRK14965 DNA polymerase III su 96.7 0.013 2.7E-07 75.4 13.3 128 758-886 38-192 (576)
338 TIGR00382 clpX endopeptidase C 96.7 0.005 1.1E-07 74.6 9.1 72 757-828 116-194 (413)
339 PRK07133 DNA polymerase III su 96.7 0.01 2.3E-07 76.1 12.3 79 758-840 40-140 (725)
340 TIGR02169 SMC_prok_A chromosom 96.7 5 0.00011 57.5 41.2 17 1437-1453 548-564 (1164)
341 PRK05707 DNA polymerase III su 96.7 0.0088 1.9E-07 71.0 10.9 140 38-207 17-176 (328)
342 TIGR03015 pepcterm_ATPase puta 96.7 0.026 5.7E-07 65.8 14.9 88 753-840 39-148 (269)
343 TIGR02397 dnaX_nterm DNA polym 96.7 0.013 2.8E-07 71.5 12.8 24 759-782 38-61 (355)
344 TIGR03185 DNA_S_dndD DNA sulfu 96.7 3.3 7.2E-05 54.7 35.8 46 1103-1156 264-309 (650)
345 PRK11637 AmiB activator; Provi 96.6 3.1 6.7E-05 51.9 34.0 12 1481-1492 358-369 (428)
346 KOG0477|consensus 96.6 0.001 2.2E-08 80.0 2.6 132 417-565 483-629 (854)
347 TIGR02030 BchI-ChlI magnesium 96.6 0.0045 9.8E-08 73.4 8.0 145 32-189 14-200 (337)
348 CHL00176 ftsH cell division pr 96.6 0.0046 9.9E-08 79.6 8.5 70 754-825 214-285 (638)
349 PRK08769 DNA polymerase III su 96.6 0.023 5E-07 66.9 13.6 152 29-207 8-183 (319)
350 TIGR02903 spore_lon_C ATP-depe 96.6 0.024 5.2E-07 73.3 15.0 157 757-939 175-368 (615)
351 KOG0738|consensus 96.6 0.0025 5.5E-08 73.1 5.3 69 753-823 241-312 (491)
352 PRK09183 transposase/IS protei 96.6 0.0019 4E-08 74.3 4.3 37 413-449 99-137 (259)
353 PRK06305 DNA polymerase III su 96.6 0.012 2.7E-07 73.1 11.8 126 760-886 42-194 (451)
354 PF00261 Tropomyosin: Tropomyo 96.6 2 4.4E-05 48.7 28.8 119 1229-1357 113-231 (237)
355 KOG0990|consensus 96.5 0.0021 4.6E-08 72.3 4.3 137 417-581 63-204 (360)
356 smart00382 AAA ATPases associa 96.5 0.018 4E-07 59.2 11.3 37 757-793 2-41 (148)
357 PF14516 AAA_35: AAA-like doma 96.5 0.016 3.4E-07 69.5 12.0 162 408-579 23-213 (331)
358 PRK06964 DNA polymerase III su 96.5 0.028 6E-07 66.8 13.8 152 41-207 19-202 (342)
359 PF04665 Pox_A32: Poxvirus A32 96.5 0.015 3.3E-07 64.9 10.9 33 410-442 7-39 (241)
360 KOG0250|consensus 96.5 5.1 0.00011 53.0 38.6 40 420-465 66-105 (1074)
361 COG1223 Predicted ATPase (AAA+ 96.5 0.0071 1.5E-07 65.8 7.8 65 759-824 153-219 (368)
362 PRK08451 DNA polymerase III su 96.5 0.53 1.2E-05 59.3 25.5 131 758-939 36-191 (535)
363 PF07726 AAA_3: ATPase family 96.5 0.0016 3.5E-08 64.4 2.8 43 759-801 1-43 (131)
364 PRK06835 DNA replication prote 96.5 0.0047 1E-07 73.1 7.2 99 408-516 175-277 (329)
365 PF00158 Sigma54_activat: Sigm 96.5 0.0086 1.9E-07 63.9 8.5 127 28-172 6-142 (168)
366 PRK14948 DNA polymerase III su 96.5 0.015 3.2E-07 74.9 12.2 88 737-829 19-135 (620)
367 PRK04863 mukB cell division pr 96.5 8 0.00017 55.0 40.0 23 418-440 29-51 (1486)
368 KOG0161|consensus 96.5 5.2 0.00011 57.2 36.8 27 44-70 169-195 (1930)
369 PRK07940 DNA polymerase III su 96.5 0.017 3.8E-07 70.1 11.8 68 760-831 39-133 (394)
370 PRK06964 DNA polymerase III su 96.5 0.019 4.1E-07 68.2 11.7 73 483-578 130-202 (342)
371 PRK05564 DNA polymerase III su 96.4 0.0083 1.8E-07 71.5 8.8 150 27-207 10-163 (313)
372 PRK06871 DNA polymerase III su 96.4 0.026 5.7E-07 66.5 12.7 145 32-207 13-177 (325)
373 PRK07399 DNA polymerase III su 96.4 0.025 5.3E-07 66.9 12.5 72 484-579 123-194 (314)
374 PRK13531 regulatory ATPase Rav 96.4 0.42 9.2E-06 58.8 23.1 29 754-782 36-64 (498)
375 PRK06871 DNA polymerase III su 96.4 0.027 5.8E-07 66.5 12.6 136 409-578 14-177 (325)
376 PRK06647 DNA polymerase III su 96.4 0.019 4.1E-07 73.1 12.2 80 760-843 41-144 (563)
377 PRK14088 dnaA chromosomal repl 96.4 0.017 3.7E-07 71.7 11.7 78 759-842 132-227 (440)
378 TIGR02688 conserved hypothetic 96.4 0.013 2.9E-07 69.8 10.0 114 403-540 194-312 (449)
379 TIGR02168 SMC_prok_B chromosom 96.4 5.8 0.00013 57.0 39.1 23 45-67 25-47 (1179)
380 COG0714 MoxR-like ATPases [Gen 96.4 0.0091 2E-07 71.7 8.7 140 756-928 42-193 (329)
381 PRK08769 DNA polymerase III su 96.4 0.032 6.8E-07 65.8 12.9 135 409-577 16-182 (319)
382 TIGR01241 FtsH_fam ATP-depende 96.4 0.0068 1.5E-07 77.0 7.9 69 754-824 86-156 (495)
383 PRK07952 DNA replication prote 96.3 0.0069 1.5E-07 68.5 6.8 90 417-518 100-191 (244)
384 COG0466 Lon ATP-dependent Lon 96.3 0.012 2.6E-07 73.3 9.1 71 755-827 347-429 (782)
385 KOG2680|consensus 96.3 0.017 3.6E-07 64.1 9.2 75 487-580 290-371 (454)
386 PRK08084 DNA replication initi 96.3 0.052 1.1E-06 61.7 13.8 82 758-848 46-136 (235)
387 PRK10869 recombination and rep 96.3 5.8 0.00013 51.1 38.5 30 754-783 19-48 (553)
388 TIGR02928 orc1/cdc6 family rep 96.3 0.027 5.8E-07 69.0 12.3 158 757-938 40-213 (365)
389 PRK05563 DNA polymerase III su 96.3 0.026 5.6E-07 72.2 12.3 80 758-841 38-142 (559)
390 COG0497 RecN ATPase involved i 96.2 5.1 0.00011 50.1 37.2 59 999-1057 136-194 (557)
391 cd01128 rho_factor Transcripti 96.2 0.013 2.7E-07 66.7 8.4 122 413-543 13-167 (249)
392 KOG2004|consensus 96.2 0.012 2.7E-07 72.6 8.6 73 750-824 430-514 (906)
393 TIGR00602 rad24 checkpoint pro 96.2 0.027 5.9E-07 72.0 12.1 28 760-787 113-140 (637)
394 PRK07399 DNA polymerase III su 96.2 0.033 7.1E-07 65.9 12.0 166 27-207 10-193 (314)
395 PF01695 IstB_IS21: IstB-like 96.2 0.0034 7.4E-08 67.7 3.5 93 411-513 42-136 (178)
396 PHA02774 E1; Provisional 96.2 0.024 5.2E-07 70.1 10.9 130 404-567 419-555 (613)
397 PRK06090 DNA polymerase III su 96.2 0.041 9E-07 64.7 12.6 147 31-207 13-178 (319)
398 PRK07471 DNA polymerase III su 96.2 0.041 8.9E-07 66.4 12.9 156 28-207 26-211 (365)
399 KOG2543|consensus 96.2 0.087 1.9E-06 61.2 14.5 152 407-578 16-191 (438)
400 COG4650 RtcR Sigma54-dependent 96.2 0.014 2.9E-07 64.2 7.8 126 404-540 195-330 (531)
401 PRK12422 chromosomal replicati 96.2 0.05 1.1E-06 67.5 13.8 145 758-936 142-303 (445)
402 PRK13407 bchI magnesium chelat 96.1 0.0061 1.3E-07 72.2 5.4 135 42-189 27-197 (334)
403 cd01131 PilT Pilus retraction 96.1 0.019 4.1E-07 63.4 8.9 85 45-136 3-87 (198)
404 PF12774 AAA_6: Hydrolytic ATP 96.1 0.036 7.8E-07 62.3 11.1 95 736-837 12-106 (231)
405 KOG0729|consensus 96.1 0.032 6.9E-07 60.7 9.9 44 744-788 198-242 (435)
406 PF00931 NB-ARC: NB-ARC domain 96.1 0.018 3.9E-07 67.9 9.1 147 408-581 8-171 (287)
407 COG1219 ClpX ATP-dependent pro 96.1 0.013 2.8E-07 65.9 7.1 80 744-823 79-170 (408)
408 PHA02562 46 endonuclease subun 96.1 2.8 6.1E-05 54.6 30.3 74 1261-1344 334-407 (562)
409 TIGR00606 rad50 rad50. This fa 96.1 13 0.00029 53.3 43.1 20 418-437 30-49 (1311)
410 PRK07261 topology modulation p 96.1 0.0088 1.9E-07 64.3 5.7 22 46-67 3-24 (171)
411 KOG2228|consensus 96.1 0.01 2.2E-07 67.3 6.2 150 414-580 47-219 (408)
412 PRK00411 cdc6 cell division co 96.0 0.8 1.7E-05 56.7 23.6 157 757-938 55-221 (394)
413 PRK00149 dnaA chromosomal repl 96.0 0.043 9.3E-07 68.9 12.3 33 758-790 149-186 (450)
414 PRK05917 DNA polymerase III su 96.0 0.035 7.6E-07 64.0 10.4 137 30-193 6-154 (290)
415 PRK07952 DNA replication prote 96.0 0.043 9.4E-07 62.1 11.0 63 758-827 100-174 (244)
416 PRK13808 adenylate kinase; Pro 96.0 0.0099 2.2E-07 69.7 5.9 23 46-68 3-25 (333)
417 PF05621 TniB: Bacterial TniB 96.0 0.046 1E-06 62.6 11.0 158 394-569 34-215 (302)
418 PRK06921 hypothetical protein; 96.0 0.01 2.2E-07 68.5 6.0 36 415-450 116-154 (266)
419 KOG1970|consensus 95.9 0.036 7.7E-07 67.0 10.3 152 417-583 111-283 (634)
420 PRK00409 recombination and DNA 95.9 2.1 4.5E-05 57.3 27.9 20 759-778 329-348 (782)
421 KOG0976|consensus 95.9 7.5 0.00016 49.0 35.8 43 1311-1353 360-402 (1265)
422 PRK10536 hypothetical protein; 95.9 0.054 1.2E-06 60.9 11.0 163 36-206 67-259 (262)
423 COG2255 RuvB Holliday junction 95.9 0.028 6.2E-07 62.5 8.6 83 750-839 45-127 (332)
424 PF00308 Bac_DnaA: Bacterial d 95.9 0.11 2.3E-06 58.4 13.6 128 759-889 36-202 (219)
425 PRK14971 DNA polymerase III su 95.9 0.052 1.1E-06 70.0 12.5 122 758-883 39-191 (614)
426 CHL00206 ycf2 Ycf2; Provisiona 95.8 0.012 2.5E-07 80.9 6.5 39 753-792 1627-1665(2281)
427 PRK03918 chromosome segregatio 95.8 13 0.00029 51.3 39.1 22 419-440 26-47 (880)
428 PRK12377 putative replication 95.8 0.011 2.4E-07 67.1 5.4 94 412-518 97-192 (248)
429 KOG0161|consensus 95.8 17 0.00036 52.4 39.9 10 416-425 551-560 (1930)
430 PF01637 Arch_ATPase: Archaeal 95.8 0.025 5.4E-07 64.2 8.5 52 887-939 155-206 (234)
431 PF01078 Mg_chelatase: Magnesi 95.8 0.0041 8.9E-08 67.3 1.8 123 28-169 9-154 (206)
432 PF06160 EzrA: Septation ring 95.8 9.3 0.0002 49.3 36.1 90 1002-1091 60-151 (560)
433 TIGR03689 pup_AAA proteasome A 95.8 0.014 3E-07 72.6 6.5 69 754-824 214-298 (512)
434 PRK14970 DNA polymerase III su 95.8 0.038 8.1E-07 67.7 10.3 88 737-829 20-122 (367)
435 PRK06090 DNA polymerase III su 95.8 0.1 2.3E-06 61.4 13.3 134 410-577 16-177 (319)
436 KOG0743|consensus 95.7 0.017 3.6E-07 68.7 6.5 59 757-823 236-294 (457)
437 TIGR01069 mutS2 MutS2 family p 95.7 2.7 5.8E-05 56.1 27.6 23 758-780 323-345 (771)
438 PRK07993 DNA polymerase III su 95.7 0.063 1.4E-06 64.0 11.5 148 30-207 11-178 (334)
439 PF00910 RNA_helicase: RNA hel 95.7 0.02 4.4E-07 56.2 6.0 103 419-541 1-106 (107)
440 PF13245 AAA_19: Part of AAA d 95.7 0.013 2.8E-07 53.4 4.2 39 412-451 6-51 (76)
441 KOG1029|consensus 95.7 5.9 0.00013 49.8 27.4 94 1260-1356 482-575 (1118)
442 PRK14087 dnaA chromosomal repl 95.7 0.072 1.6E-06 66.3 12.2 80 758-843 142-240 (450)
443 PRK08727 hypothetical protein; 95.7 0.19 4.1E-06 57.1 14.6 128 759-938 43-176 (233)
444 PRK10733 hflB ATP-dependent me 95.6 0.033 7.1E-07 72.7 9.3 69 754-824 183-253 (644)
445 TIGR00362 DnaA chromosomal rep 95.6 0.071 1.5E-06 66.1 11.9 32 759-790 138-174 (405)
446 KOG0739|consensus 95.6 0.018 3.9E-07 63.8 5.6 67 755-824 164-234 (439)
447 TIGR00041 DTMP_kinase thymidyl 95.6 0.021 4.6E-07 63.0 6.5 47 45-93 5-51 (195)
448 CHL00081 chlI Mg-protoporyphyr 95.6 0.018 4E-07 68.3 6.2 138 44-188 39-212 (350)
449 PRK06893 DNA replication initi 95.6 0.14 2.9E-06 58.1 13.1 121 759-888 41-177 (229)
450 COG1484 DnaC DNA replication p 95.6 0.017 3.7E-07 66.1 5.8 94 412-514 101-196 (254)
451 PF13173 AAA_14: AAA domain 95.6 0.03 6.5E-07 57.0 7.0 83 758-842 3-87 (128)
452 PRK08116 hypothetical protein; 95.6 0.12 2.5E-06 59.9 12.6 42 759-806 116-160 (268)
453 PF05673 DUF815: Protein of un 95.6 0.1 2.2E-06 58.0 11.4 81 755-842 50-134 (249)
454 PRK05201 hslU ATP-dependent pr 95.5 0.035 7.6E-07 66.5 8.3 35 757-791 50-84 (443)
455 KOG0980|consensus 95.5 4.8 0.0001 51.7 26.6 58 1230-1287 446-503 (980)
456 COG3267 ExeA Type II secretory 95.5 0.066 1.4E-06 59.1 9.6 147 405-575 39-208 (269)
457 KOG0978|consensus 95.5 12 0.00025 48.2 38.5 124 1226-1352 486-609 (698)
458 PF13207 AAA_17: AAA domain; P 95.5 0.011 2.3E-07 59.6 3.2 22 46-67 2-23 (121)
459 COG1196 Smc Chromosome segrega 95.5 20 0.00044 50.8 42.8 12 1482-1493 613-624 (1163)
460 PRK07993 DNA polymerase III su 95.5 0.05 1.1E-06 64.9 9.3 127 416-576 24-176 (334)
461 TIGR00767 rho transcription te 95.4 0.023 5E-07 67.7 6.3 82 413-496 165-266 (415)
462 TIGR03420 DnaA_homol_Hda DnaA 95.4 0.17 3.6E-06 57.3 13.3 66 755-829 36-104 (226)
463 PF12718 Tropomyosin_1: Tropom 95.4 1.4 3E-05 45.6 18.2 121 1231-1354 16-139 (143)
464 PRK09376 rho transcription ter 95.4 0.019 4.2E-07 67.9 5.4 28 413-440 166-193 (416)
465 TIGR03574 selen_PSTK L-seryl-t 95.4 0.012 2.6E-07 67.7 3.6 24 46-69 2-25 (249)
466 TIGR00390 hslU ATP-dependent p 95.4 0.032 6.9E-07 66.8 7.1 35 757-791 47-81 (441)
467 KOG0727|consensus 95.3 0.035 7.5E-07 60.0 6.6 63 753-823 186-256 (408)
468 COG0194 Gmk Guanylate kinase [ 95.3 0.04 8.6E-07 58.1 6.9 26 415-440 3-28 (191)
469 PRK12377 putative replication 95.3 0.054 1.2E-06 61.5 8.5 77 757-839 101-189 (248)
470 PRK13948 shikimate kinase; Pro 95.3 0.14 3.1E-06 55.4 11.3 35 755-789 8-42 (182)
471 PRK07132 DNA polymerase III su 95.3 0.22 4.8E-06 58.2 13.7 138 407-577 6-159 (299)
472 PRK02224 chromosome segregatio 95.3 20 0.00043 49.6 45.4 27 755-781 21-47 (880)
473 PRK09087 hypothetical protein; 95.3 0.16 3.4E-06 57.2 12.1 113 759-887 46-168 (226)
474 PRK08939 primosomal protein Dn 95.3 0.02 4.3E-07 67.4 5.0 37 415-451 155-193 (306)
475 KOG3595|consensus 95.2 9.7 0.00021 54.6 32.0 128 40-184 124-280 (1395)
476 KOG3347|consensus 95.2 0.026 5.7E-07 56.5 4.8 163 418-619 9-174 (176)
477 PF09726 Macoilin: Transmembra 95.1 16 0.00034 48.0 30.8 62 1241-1302 543-604 (697)
478 COG1116 TauB ABC-type nitrate/ 95.1 0.012 2.5E-07 65.1 2.3 24 45-68 31-54 (248)
479 PF05621 TniB: Bacterial TniB 95.1 0.57 1.2E-05 54.0 15.8 46 735-780 35-84 (302)
480 COG3911 Predicted ATPase [Gene 95.1 0.022 4.9E-07 56.8 4.0 82 45-135 11-94 (183)
481 PRK08699 DNA polymerase III su 95.1 0.15 3.3E-06 60.5 11.8 123 760-883 24-183 (325)
482 TIGR00368 Mg chelatase-related 95.0 0.031 6.7E-07 70.1 6.0 116 41-173 209-347 (499)
483 KOG0989|consensus 95.0 3.8 8.2E-05 46.9 21.4 28 756-783 56-83 (346)
484 PRK08181 transposase; Validate 95.0 0.061 1.3E-06 61.9 7.9 91 38-147 101-195 (269)
485 PF05729 NACHT: NACHT domain 95.0 0.045 9.7E-07 58.4 6.5 46 44-89 1-49 (166)
486 PRK06835 DNA replication prote 95.0 0.2 4.4E-06 59.5 12.3 46 754-805 180-228 (329)
487 PRK05818 DNA polymerase III su 95.0 0.11 2.4E-06 58.6 9.5 125 40-193 4-147 (261)
488 PRK06620 hypothetical protein; 94.9 0.22 4.8E-06 55.6 12.0 26 758-783 45-70 (214)
489 KOG0652|consensus 94.9 0.028 6.1E-07 60.9 4.5 78 744-824 192-273 (424)
490 PRK12608 transcription termina 94.9 0.032 7E-07 66.1 5.4 89 408-496 123-231 (380)
491 PF12718 Tropomyosin_1: Tropom 94.9 1.4 3.1E-05 45.4 16.7 90 1244-1333 8-97 (143)
492 KOG0991|consensus 94.9 0.36 7.8E-06 52.2 12.5 90 735-826 28-124 (333)
493 KOG0977|consensus 94.9 15 0.00031 46.0 29.2 23 1040-1062 112-134 (546)
494 KOG0741|consensus 94.9 0.031 6.6E-07 66.8 5.0 85 35-131 246-332 (744)
495 COG0465 HflB ATP-dependent Zn 94.9 0.036 7.9E-07 69.4 6.0 63 754-824 181-251 (596)
496 COG4088 Predicted nucleotide k 94.9 0.035 7.6E-07 58.7 4.9 25 46-70 4-28 (261)
497 COG1126 GlnQ ABC-type polar am 94.8 0.017 3.7E-07 62.0 2.6 25 41-65 26-50 (240)
498 KOG0651|consensus 94.8 0.054 1.2E-06 60.9 6.5 70 753-824 163-234 (388)
499 PF13555 AAA_29: P-loop contai 94.8 0.025 5.5E-07 48.6 3.1 24 45-68 25-48 (62)
500 KOG1970|consensus 94.8 0.24 5.3E-06 60.1 12.3 115 741-895 92-234 (634)
No 1
>KOG3595|consensus
Probab=100.00 E-value=5e-161 Score=1631.30 Aligned_cols=1233 Identities=42% Similarity=0.724 Sum_probs=1159.2
Q ss_pred hHHHHHHHHHHhhhcccCCCccchHHHHHHHhhhccccCCCCCCCeeEEEEecCCCceeecCCCCccccccccccCCcce
Q psy568 316 RYIPRILVYSLLWSFAGDGKLKMRSDFGNFLRSVTTITLPATSSDIVDFEVNIKNGEWVPWSNKVPQIEVETQKVAASDV 395 (1614)
Q Consensus 316 ~~~~~~f~fa~~Ws~gg~l~~~~r~~f~~~l~~~~~~~~p~~~~~v~d~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 395 (1614)
.++...|+||++|++||.+..+.|..|..+++.... .+++||++...+.|.+|.+.++ +... .+.. ++
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~--~~ 106 (1395)
T KOG3595|consen 39 SHLERLFLFALIWALGGDLDADSREKFREFLRRLIN--------IIDLYYIDEEIGDWEPWIDKVP-FELL-EDHE--DI 106 (1395)
T ss_pred HHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHh--------hhhheeeeeccccccchhhhCc-cccc-cccc--ce
Confidence 467789999999999999999999999999999765 5788889999999999999999 5433 2333 99
Q ss_pred eeeCcchhhHHHHHHHHHhcCCCEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCCHHHHHhHhhcccceeecCCc
Q psy568 396 VVPTLDTVRHESLLYTWLAEHKPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTPELLLKTFDHYCEYRKTPNG 475 (1614)
Q Consensus 396 ~vpT~~t~r~~~ll~~~l~~~~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~~~~l~~~~~~~~~~~~~~~g 475 (1614)
+|||.||+|+.+++..++..+++++++||+|+|||.++...+.......+..++||..|++..++..+++.++++.. |
T Consensus 107 ~v~t~dt~r~~~~~~~~~~~~k~~~~~g~~g~gk~~~~~~~~~~~~~~~~~~~~fs~~ts~~~~q~~~~~~~~k~~~--~ 184 (1395)
T KOG3595|consen 107 LVPTIDTVRYDRLLKLLLAHGKPVLLVGPTGTGKTVLVLSELRSLQDREVYLLNFSSVTSSELLQEIIESKLDKRRS--G 184 (1395)
T ss_pred ecCccceeeHHHHHHHHHHhCCeEEEEcCCCCCeeeehHHHHHhcccchheEEeeeeeccHHHHHHHHHHHHHHhcc--c
Confidence 99999999999999999999999999999999999999999988765554449999999999999999999988773 4
Q ss_pred cccccccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCCCcccc
Q psy568 476 VILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRF 555 (1614)
Q Consensus 476 ~~~~p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~ 555 (1614)
. ++|. .++++++|+||+|||..|.||+|++++++||+++++|||++....|..+.++++++|||||+ +||+++++||
T Consensus 185 ~-~~~~-~~~~~~~f~ddinmp~~~~yg~q~~~~~lrq~~e~~g~~~~~~~~~~~i~~i~~~~a~~~~~-~gr~~i~~r~ 261 (1395)
T KOG3595|consen 185 N-YGPP-LGKKLVLFVDDINMPALDKYGDQPPIELLRQMLEHGGFYDRKKSEWVEIENVQLVGAMNPPG-GGRNDITERF 261 (1395)
T ss_pred C-CCCC-CCceeEEEEeccCCchhhhcCCccHHHHHHHHHHhceeecccccceeEEeeeEEEeecCCCC-CccCcccHHH
Confidence 4 5554 69999999999999999999999999999999999999998889999999999999999965 8999999999
Q ss_pred cccccEEEecCCChhHHHHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHHHhhcCC-CCCCccccChhhHHHHhhhh
Q psy568 556 LRHVPVIYVDYPGETSLKQIYGTFSRAMLRLIPPLRGYADALTNAMVELYLASQEKFTQ-DMQPHYVYSPREMTRWVRGI 634 (1614)
Q Consensus 556 ~r~f~~i~i~~p~~~~l~~I~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~hY~F~lRdl~~v~~~i 634 (1614)
.|||.+++++.|+.+++..||+.++..+..+.+........++++++.+|......+.+ +.++||.||+||+++|++|+
T Consensus 262 ~r~f~~~~~~~~~~~sl~~if~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~t~~~~hyv~~lrd~~r~~~~i 341 (1395)
T KOG3595|consen 262 LRHFLIVSLNYPSQESLTQIFNTILTGHLRFAPAFRTSIEPIVNASVDFYPKVQENFLPTPSKSHYVFNLRDLSRVVQGI 341 (1395)
T ss_pred HHHeeeEeeCCCChhhHHHHHHHHHhcccCccHHHHHhHHHHHHHHHHHHHHHHHhcCCCCCcceeeechhhhhhheeeh
Confidence 99999999999999999999999999987766777777999999999999999988875 78899999999999999999
Q ss_pred hcccCCCccCCHHHHHHHHHHhhhhhhcccCCChhHHHHHHHHHHHHHHhhcCCcchhhcccCceeccCCcCC---Cccc
Q psy568 635 CEAIRPLESLTVEGLVRLWAHEALRLFQDRLVNDVERQWTNENIDAVAMKYFSNIDKEVLARPILYSNWLSKN---YVPV 711 (1614)
Q Consensus 635 ~~~~~~~~~~~~~~l~~lw~hE~~Rvf~DRL~~~~d~~~~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~~~~~---~~~v 711 (1614)
..+. +....+...++++|+||+.|||.|||++.+|+.|+.+.+...+..+|.... ...|..|+++.... |.++
T Consensus 342 ~~~~-~~~~~~~~~l~~~~~~e~~rv~~drlv~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~y~~~ 417 (1395)
T KOG3595|consen 342 LLAV-SEALLTLEDLIRLWVHEAIRVFADRLVDDEDRQWFDKKLQEVLLKLFEADS---LQMPLLYGDFRSESHKIYEEV 417 (1395)
T ss_pred cccC-cHhhccHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHhhhhh---hcCCceeeecccccccccCch
Confidence 9986 777888999999999999999999999999999999999999999997654 56678888887744 6666
Q ss_pred Ch-hHHHHHHHHHHHHHH-hhhcccchhhHHHHHHHHHHHHHHhccCCccEEEeecCCCChHHHHHHHHHHcCCeEEEEE
Q psy568 712 GT-TELREYVQARLKVFY-EEELDVQLVLFDEVLDHVLRIDRIFRQPQGHLLLIGVSGAGKTTLSRFVAFMNGLSVFQIR 789 (1614)
Q Consensus 712 ~~-~~l~~~~~~~l~~~~-~~~~~~~lvlf~~~i~hi~ri~Ril~~p~gh~LLvG~~GsGKtsl~rlaA~~~~~~~~~i~ 789 (1614)
.. +.++..+...+..|+ .+...|++|+|.+++.|+.|+.|++++|+||++|+|.+|+||++++|++++++++.+++++
T Consensus 418 ~~~~~l~~~~~~~l~~~~~~~~~~~~lvlf~~~~~h~~ri~ril~~~~g~~llvgv~g~gkqsl~r~~~~~~~~~~fq~~ 497 (1395)
T KOG3595|consen 418 LSVELLRGVLEAYLKQFNIEEIRPMHLVLFRDAIEHVLRIDRILRQPRGHALLVGVGGSGKQSLTRLAAFINGLSVFQIE 497 (1395)
T ss_pred HhHHHHHHHHHHHHHHHhhhccCCCceeeeHHHhhhhhhhHHHhcCCCccEEEeecCCCCcccHHHHHHhhccccceeee
Confidence 54 667777778888888 6678899999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCChhcHHHHHHHHHHHhccCCCcEEEEEcCCcccccchHHHHHHhhccCCCCCCCChhhHHHHHHHhHHHHHHcC-
Q psy568 790 AHNKYTGADFDEDLRTVLRRSGCKNEKIAFLLDESNVLESGFLERMNTLLANGEIPGLFEGDEYTTLMTQCKEGAQREG- 868 (1614)
Q Consensus 790 ~~~~~~~~df~~~lk~~l~~ag~~~~~~v~ll~d~~i~~~~~le~in~lL~~G~v~~Lf~~eE~~~i~~~~~~~~~~~~- 868 (1614)
.+++|+..+|+++++.+++.+|.++++++|+++|.++.++.|+|+||++|++|++|+||.+||++.++..........+
T Consensus 498 ~~~~y~~~~~~~dl~~~~r~~g~~~~~~~f~~~~~~i~~e~fle~ln~ll~~gevp~lf~~de~~~~~~~~~~~~~~~~~ 577 (1395)
T KOG3595|consen 498 ITRSYNIEDFREDLKAILRKAGLKNKETVFILTDSQIKDESFLEDLNNLLASGEVPNLFTGDELDEIKMELAGEMGEEAK 577 (1395)
T ss_pred ccccCcHHHHHHHHHHHHHHhccCCCceEEeechHHHHHHHHHHHHHHHHhCCCCCCccchHHHHHHHHHHHHHhhhhcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999997777666665554
Q ss_pred CCCCCHHHHHHHHHHHHhhcceEEEEECCCChhhHHHhhhCccccccceecccCCCcHHHHHHHHHHhhcccCCCCCCCC
Q psy568 869 LMLDSNEELYKWFTQQVMKNLHVVFTMNPSSEGLKDRAATSPALFNRCVLNWFGDWSDTALYQVAKEFTSKIDLDGPQNW 948 (1614)
Q Consensus 869 ~~~~s~~~l~~~f~~rv~~nlhivl~~sp~~~~~r~~~~~~PaL~~~~~i~wf~~W~~eaL~~va~~~l~~~~~~~~~~~ 948 (1614)
...++.+++|.||+.|++.|+|+|++++|+|+.||.|.+.||+++|||+||||++||.+++.+|+..++.+.....+
T Consensus 578 ~~~~s~e~~~~~f~~~~~~~l~~vl~~~~~g~~~~~r~~~~pal~~~~~i~w~~~w~~~al~~v~~~~l~~~~~~~~--- 654 (1395)
T KOG3595|consen 578 LILDSRENLYLFFIFRVRRNLHVVLSVSPVGDAFRLRARKFPALVNRCTIDWFDSWPTEALLSVAEEFLASQDILSP--- 654 (1395)
T ss_pred ccCccHHHHHHHHHHHHHHhcceeEEeCchhhHHHHHHHhChhhhccchhhhcccCCHHHHHHHHHHHHhhhcCCCc---
Confidence 45689999999999999999999999999999999999999999999999999999999999999999987665432
Q ss_pred CCCCCCcccccccCCCcchhHHHHHHHHHHHhcHHHHHHHHHHhcCCccccCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy568 949 KAPDFFPSVCSLVSTTPSHRDSVINACVYVHQTLHKANARLSKRGSRTMAITPRHYLDFINHFVKLYREKCSELEEQQLH 1028 (1614)
Q Consensus 949 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~r~~~~tp~~yl~~l~~f~~l~~~k~~~~~~~~~~ 1028 (1614)
...+..+...+..+|.++.+.+..|+...+|++|+||++|++|+++|..++++|++++..+..|
T Consensus 655 ----------------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~~tp~~~l~~i~~f~~ll~~k~~~~~~~~~r 718 (1395)
T KOG3595|consen 655 ----------------SEKRGAISLTMILFHETVLESFASYFDRLSRHNYVTPTSYLEFIGTFKKLLKEKRSEVRLRKLR 718 (1395)
T ss_pred ----------------ccccchhhhhhhhhhhhHHHHhHHHHHhcCceeecCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2235678889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy568 1029 LNVGLGKIAETVEQVEEMQKSLAVKSQELQSKNEAANLKLKEMIKDQQEAEKRKVQSQDIQAEIEKQTVEIAQKRVFVME 1108 (1614)
Q Consensus 1029 l~~gL~kl~~~~~~v~~l~~~L~~~~~~l~~~~~~~~~~l~~i~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ 1108 (1614)
+..||+||.++.++|+.|+.+|..+++++..+.+++++.+.++..+.++++.++..+.+.+++.+++...+...+++|++
T Consensus 719 ~~~gl~kl~~a~~~v~~l~~~l~~~~~el~~~~~~a~~~l~~i~~~~~~~e~~k~~v~~~e~~~~~~~~~~~~~k~~v~~ 798 (1395)
T KOG3595|consen 719 LELGLDKLKEAGEQVAGLQKELAALQPELQVKSKEANDVLAKILKETQAAEAQKEAVLEDEKKAQEKAGLIQAQKAEVEE 798 (1395)
T ss_pred HHhhhHHhhHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHHhhhhhHHHhhcCCCCcHHHHHHHHHHHHhcC-CCCCCHHHHHHHhchhh-hHHHHHhhcCCC
Q psy568 1109 DLAQVEPAVMDAQQAVKEIKKQQLVELRSMANPPSVVKLALESICLLLG-ENATDWKAIRAVVMREN-FINSIVSNFNTE 1186 (1614)
Q Consensus 1109 ~l~~a~p~l~~A~~al~~l~~~dl~Eirs~~~PP~~V~~v~eavc~Llg-~~~~~W~~~k~~l~~~~-F~~~l~~~~d~~ 1186 (1614)
++++|+|++++|.+++++|++.|+.++|+|.+||.+|+.+|+|||+|+| ...++|.++.++|.+.+ |+..+. +|+++
T Consensus 799 ~l~~a~P~leeA~aal~ti~k~~l~~lks~~~PP~~Vk~~meavciLlg~~~~~~w~~~~~~~~~~~~fl~~l~-~~~~~ 877 (1395)
T KOG3595|consen 799 DLEEAEPALEEASAALSTIKKADLSELKSMKNPPHAVKLVMEAVCILLGRLSSTDWKNISKLLLSDDFFLIILR-EFDKD 877 (1395)
T ss_pred HHhhhhHHHHHHHHHHhcCChhhHHHHHhcCCCcHHHHHHHHHHHHHhccccCCChHHHHHHhhcccHHHHHhh-cCccc
Confidence 9999999999999999999999999999999999999999999999999 44467888877777765 888887 99999
Q ss_pred CCcHHHHHHHHhhhcCCCCCCHHHHHhhhhchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy568 1187 MITDEVREKMHSRYLSNPDYSYEKANRASMACGPMVKWAIAQISYADMLKKVEPLRLELKSLEVQASENKAKGEETKDLI 1266 (1614)
Q Consensus 1187 ~i~~~~~~~l~~~~~~~~~f~~~~~~~~S~aa~~L~~Wv~Ai~~y~~v~~~v~P~~~~l~~~~~~~~~~~~~l~~~~~~l 1266 (1614)
++++.+.+.+.+.|+++|+|.|+.+.++|.||++||.||.|+..|+++++.|+|++.++++++.+.....+++++...++
T Consensus 878 ~i~~~~~k~i~~~~~~~p~f~~~~v~~~s~a~~~l~~wv~a~~~~~kv~~~v~p~~~~~~~~e~~~~~~~~~l~~~~~~l 957 (1395)
T KOG3595|consen 878 EIPEEIMKLIKKFYFQNPDFVPEKVNRASLACEGLCLWVIAIDKYSKVLKVVEPKRQELARLEAELKAAMKELEEKSAEL 957 (1395)
T ss_pred cChHHHHHHHHHhhcCCccCCHHHHHhhhhhhhhHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhHHHHH
Q psy568 1267 TQLEKSIASYKDEYAQLIAQATAIKTDLDNVQAKFYEYAQLIAQATAIKTDLDNVQAKVERSMALLKSLGIERERWEATS 1346 (1614)
Q Consensus 1267 ~~~e~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~rl~~a~~l~~~L~~e~~rW~~~~ 1346 (1614)
.+++++++.+++++++...+.+.+ +.++..++.|+.+|.+|+.+|++|+.||....
T Consensus 958 ~~~e~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~k~~~a~~Li~~Ls~e~~rW~~~~ 1013 (1395)
T KOG3595|consen 958 QDLEEKLQRLKDEYEQLIAEKQEL------------------------EEDMDACELKLLRAEELIQGLSGEKERWSETS 1013 (1395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHhcccchHHHHHHH
Confidence 999999999999999887776666 77888999999999999999999999999999
Q ss_pred HHHHHhhhhchhHHHHHHHHHHhhcccCHHhHHHHHHHHHHHHHhccCCCCCCCchhcccCCHHHHHhhhhcCCCCChhh
Q psy568 1347 ETFRSQMATIIGDVLLSSAYLAYAGYFDQHYRQSLFSTWNSHLIAAGIQFRPEIALTEYLSSPDERLRWQGNALPSDHLC 1426 (1614)
Q Consensus 1347 ~~~~~~~~~l~gd~ll~aa~i~Y~G~f~~~~R~~l~~~w~~~l~~~~I~~~~~~~~~~~l~~~~~~~~w~~~gLp~d~~s 1426 (1614)
+.+..+...++||+++++++++|+|+|+..+|..++..|...+....+ +.+++++..+++++.++..|...|+|.|.++
T Consensus 1014 ~~~~~~~~~l~gd~ll~~~~~~y~g~~~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~w~~~~lp~~~~s 1092 (1395)
T KOG3595|consen 1014 EQFSKQYSRLVGDVLLSSAFVAYLGAFDQLYRQSLLRLWESLCTQLKI-VLSNFSLISMLVDPTEILNWNIRGLPADDLS 1092 (1395)
T ss_pred HHHHHHHhhhhHHHHhhhhhhhhccccCHHHHHHHHHHhHHhcCcccc-cccccchHhhcCchHhhcchhhccCcccccc
Confidence 999999999999999999999999999999999999999999998888 8899999999999999999999999999999
Q ss_pred HHHHHHHhhcCCcccccCCchHHHHHHHHhhccCCeEEeccCChhHHHHHHHHHHcCCcEEEeec-cccCCcchhhhhhh
Q psy568 1427 TENAIMLRRFNRYPLIIDPSGQATEFILKEFESRKITKTSFLDDAFRKNLESALRFGNPLLVQDV-ENYDTILNPVLNRE 1505 (1614)
Q Consensus 1427 ~eNaii~~~~~r~PLliDPq~qa~~wlk~~~~~~~~~v~s~~~~~~~~~le~ai~~G~~lli~dv-e~~dp~l~~vl~~~ 1505 (1614)
+||++++.++.|||++||||+|+..||+++++.++..++++++..|++.+|+|+++|.|++++|+ +.+||.|+|++.+.
T Consensus 1093 ~en~~i~~~~~~~~l~id~q~q~~~~i~~~~~~~~~~~i~~~~~~~l~~le~a~~~g~~il~~~~~e~~d~~l~~ll~~~ 1172 (1395)
T KOG3595|consen 1093 IENGIIITNSNRWPLIIDPQGQANEWIKNKESENKLQVISFNEKEFLRQLENALRFGEPVLIEDVNEELDPALEPLLLKE 1172 (1395)
T ss_pred hhHHHHHhccCCCceeecchhhhhHhHhhhhhhcccceeeccchhHHHHHHhHhccCCceeccchhhhhchhhhhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999 89999999999999
Q ss_pred hhccCCeEEEEeCCcccccCCCceEEEeeCCCCCCCCcccccceEEEEEeeChhhHHHHHHHHHHHhhCCCHHHHHHHHH
Q psy568 1506 LRRTGGRVLITLGDQDIDISPTFVIFLSTRDPTVEFPPDICSRVTFVNFTVTRSSLQSQCLNRVLKAERPDIDTKRSDLL 1585 (1614)
Q Consensus 1506 ~~~~~~~~~i~ig~~~i~~~~~F~l~l~T~~~~p~~~p~~~~~~tvinf~vt~~gLe~qlL~~vv~~e~p~le~~~~~l~ 1585 (1614)
..+.|+...+++||++++++++|++|++|+++||||.|+++++++++||++|..++++|+|+.++..|+|+++++|..++
T Consensus 1173 ~~~~g~~~~~~~gd~~~~~~~~f~~~~~t~~~~~~~~p~~~~~~~~v~f~~t~~~l~~qll~~v~~~e~~~~~~~~~~l~ 1252 (1395)
T KOG3595|consen 1173 TFKQGGRVLIKLGDKEIDLNPDFRLYITTKLRNPHYLPELSARVTLVNFTVTPSGLEDQLLGSVVAIERPDLEEERSDLI 1252 (1395)
T ss_pred eeeccCeEeeecCceeeecCCCeeEEEeecccCcccChhhhhceeEEEeEechhHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcCCCC
Q psy568 1586 KLQGEFHLRLRHLEKSLLGALNESKGKLL 1614 (1614)
Q Consensus 1586 ~~~~~~~~~l~~le~~lL~~L~~~~g~il 1614 (1614)
.+.++++.+|+++|+.+|+.|+.|+||+|
T Consensus 1253 ~~~~~~~~~lk~le~~lL~~l~~s~~~~l 1281 (1395)
T KOG3595|consen 1253 KLQAEIKRQLKELEDRLLERLSSSEGNIL 1281 (1395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCccc
Confidence 99999999999999999999999999986
No 2
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=100.00 E-value=6.1e-139 Score=1256.99 Aligned_cols=1466 Identities=23% Similarity=0.256 Sum_probs=1239.6
Q ss_pred HHHHHHHhccEEEEecCCCCChhhHHHHHHHHHHHhhcCCceEEEeCCCCCCcCcccccccCCCCccccchHHHHHHHHH
Q psy568 35 QLYQISNLNHGLMMVGPSGSGKSTAWKVLLKALERYEGVEGVAHIIDPKAISKEALYGVLDPNTREWTDGLFTHILRRII 114 (1614)
Q Consensus 35 qL~e~~~~r~gVmlvG~~gsGKTt~~~~L~~al~~~~~~~~~~~~inPkais~~eLyG~~d~~t~eW~DGvls~i~r~~~ 114 (1614)
.+|.........++||..|+|||.-|+....-+ +--...||+. + ++| .+-||. |+|+++.|+-.
T Consensus 1174 ~f~~~~~t~~~~~~~~~~~~~k~~~~~~~~d~~----~h~~~~yv~~-------~---~~~-a~~e~r-~~f~~~~r~d~ 1237 (3164)
T COG5245 1174 SFLRSVDTGAFHAEYFRVFLCKIKHYTDACDYL----WHVKSPYVKK-------K---YFD-ADMELR-QFFLMFNREDM 1237 (3164)
T ss_pred HHHHHhhhcHHHHHHHHHhhcccchhhhhhccc----cccCchhhHH-------H---Hhh-hhHHHH-HHHHHHhHHhh
Confidence 388888888888999999999999999877732 2111223333 1 555 467999 99999999754
Q ss_pred hhhcCCCCCceEEEEccCCChhhhhhhhhhhcCCCccccCCCceeeCCCCceEEEEeccccccCccccccceeEEecCcc
Q psy568 115 DNVRGEISKRQWIIFDGDVDPEWVENLNSVLDDNKLLTLPNGERLSLPPNIRIMFEVQDLKYATLATVSRCGMIWFSEDV 194 (1614)
Q Consensus 115 ~~~~~~~~~~~WivfDG~vd~~WiE~lnsvLDdnk~L~L~nGeri~l~~~~~~iFEv~dL~~ASPAtVSRcgmv~~~~~~ 194 (1614)
.. .-.+.+-|.+||. ++|.+|+++||||++++|+||+ +++|| +|. ..||||.|||.-|.+..-
T Consensus 1238 ~~--~~~~s~~~~~~~~-----yve~~~a~~~~~kl~~~~~ge~-------~v~~~--nl~-s~~~~v~rc~~~~ds~~~ 1300 (3164)
T COG5245 1238 EA--RLADSKMEYEVER-----YVEKTKAEVSSLKLELSSVGEG-------QVVVS--NLG-SIGDKVGRCLVEYDSISR 1300 (3164)
T ss_pred hh--hhccceEEEehHH-----HHHHHHhhhccceeeeccCCCc-------eEEEe--eCC-Cccchhheeeeeecccch
Confidence 21 1134578999998 8999999999999999999999 88998 888 889999999999998887
Q ss_pred cchHHHHHHHHHhhhccccCCcccchhhhHhhccCCCCCCcccchhHHHH---HHHHHHhhhccCCcchHHHHHHHhhhc
Q psy568 195 LSTEMIFENYLSRLRNIALDDIDDDSSLLITVDATGKAPDDVLSPALTLQ---QDVASILSTHFAPDGLVVRALDYAMQQ 271 (1614)
Q Consensus 195 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (1614)
++-+..+..-+... + ..+..++++. ......++++. ...+..++.+....
T Consensus 1301 ~St~~~~~~~lg~T-~------------------------~~Ld~~ld~fs~~~~~~~~~de~~--m~~~a~~~~fs~dl 1353 (3164)
T COG5245 1301 LSTKGVFLDELGDT-K------------------------RYLDECLDFFSCFEEVQKEIDELS--MVFCADALRFSADL 1353 (3164)
T ss_pred hccchhhHHhhccc-h------------------------hhhhhhhhhhhHHHHHHHHHHHHH--HHHHHHHHhhhhHH
Confidence 66655554443221 1 1111111111 11111122111 12334455544444
Q ss_pred ccccccchHHHHHHHHHHHHHH---hhhhhhcCCCCCCCCCChHHHHhHHHHHHHHHHhhhcccCCCccchHHHHHHHhh
Q psy568 272 EHIMDFTRLRALGSLFSMLNQG---VRNVLQYNHSHSDFPLSQDVVERYIPRILVYSLLWSFAGDGKLKMRSDFGNFLRS 348 (1614)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~fa~~Ws~gg~l~~~~r~~f~~~l~~ 348 (1614)
.|++... .+..++..+... ..+..+.. ..++...+..++.....+.+.|.+.|+-..+.+..|-.++..
T Consensus 1354 ~hI~~~r---rF~~~~~~~~~s~~l~~~s~~~~-----~~L~~K~l~~~mk~~I~~vL~~~~~gD~~~es~~rf~~~~~~ 1425 (3164)
T COG5245 1354 YHIVKER---RFSGVLAGSDASESLGGKSIELA-----AILEHKDLIVEMKRGINDVLKLRIFGDKCRESTPRFYLISDG 1425 (3164)
T ss_pred HHHhhhh---hhhhhhhhhHhHHHHhhhHHHHH-----HhcccHHHHHHHHHHHHHHHHHHHhcCcccccchhHHHhhhh
Confidence 4554422 222222221111 11111110 123445667788888999999999999999999999999887
Q ss_pred hccccCCCCC----CCeeEEEEecCCCceeecCCCCccccccccccCCc-ceeeeCcchhhHHHHHHHHHhcCCCEEEec
Q psy568 349 VTTITLPATS----SDIVDFEVNIKNGEWVPWSNKVPQIEVETQKVAAS-DVVVPTLDTVRHESLLYTWLAEHKPLVLCG 423 (1614)
Q Consensus 349 ~~~~~~p~~~----~~v~d~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~-~~~vpT~~t~r~~~ll~~~l~~~~~vLL~G 423 (1614)
-+...+|... ..+.++.++.....|.+ .+.+......+... ++++||.||.++..++.-+++..+.++++|
T Consensus 1426 ~~~~dl~e~sdye~~~i~~f~is~~~~~~~~----Iag~~l~~~~vm~~~~vVipt~dt~~~~~f~n~~lnt~R~~i~cG 1501 (3164)
T COG5245 1426 DLIKDLNERSDYEEMLIMMFNISAVITNNGS----IAGFELRGERVMLRKEVVIPTSDTGFVDSFSNEALNTLRSYIYCG 1501 (3164)
T ss_pred hhhhccchhhhhHHHHHhhcccceEeecccc----cCCceechhhhcccCCeecccccchhHHHHHHHHHhccceEEEEC
Confidence 7666666521 22344444443333333 34455555555555 899999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHhcCCCCceEEEEcccCCCHHHHHhHhhcccceeecCCccccccccCCceEEEEeccCCCCCccccC
Q psy568 424 PPGSGKTMTLLSALRALPDMEVVSLNFSSATTPELLLKTFDHYCEYRKTPNGVILSPIQLGKWLVLFCDEINLPDMDKYA 503 (1614)
Q Consensus 424 p~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~~~~l~~~~~~~~~~~~~~~g~~~~p~~~gk~~vlfiDdin~p~~d~~g 503 (1614)
|||+|||+++...+++.....++.+|||..|+..++...++...++.++.+|..+.|...-+.+|+|+|+||||..++|+
T Consensus 1502 ppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t~T~s~ls~Ler~t~yy~~tg~~~l~PK~~vK~lVLFcDeInLp~~~~y~ 1581 (3164)
T COG5245 1502 PPGSGKEMLMCPSLRSELITEVKYFNFSTCTMTPSKLSVLERETEYYPNTGVVRLYPKPVVKDLVLFCDEINLPYGFEYY 1581 (3164)
T ss_pred CCCCccchhcchhhhhhhheeeeEEeeccccCCHHHHHHHHhhceeeccCCeEEEccCcchhheEEEeeccCCccccccC
Confidence 99999999998888877778899999999999999999999999998877788888987788999999999999999999
Q ss_pred cccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCCCcccccccccEEEecCCChhHHHHHHHHHHHhh
Q psy568 504 TQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLRHVPVIYVDYPGETSLKQIYGTFSRAM 583 (1614)
Q Consensus 504 ~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r~f~~i~i~~p~~~~l~~I~~~~~~~~ 583 (1614)
++.++-+||+++++.|||.+-...|+.+.++.++|||||+++.||.+.+.||+||-.++++.+|+..++..||..++...
T Consensus 1582 ~~~vI~FlR~l~e~QGfw~s~~~~wvTI~~i~l~Gacnp~td~gRv~~~eRf~r~~v~vf~~ype~~SL~~Iyea~l~~s 1661 (3164)
T COG5245 1582 PPTVIVFLRPLVERQGFWSSIAVSWVTICGIILYGACNPGTDEGRVKYYERFIRKPVFVFCCYPELASLRNIYEAVLMGS 1661 (3164)
T ss_pred CCceEEeeHHHHHhcccccchhhhHhhhcceEEEccCCCCCCcccCccHHHHhcCceEEEecCcchhhHHHHHHHHHHHH
Confidence 99999999999999999998888999999999999999999999999999999999999999999999999999998887
Q ss_pred hhcchhhhhhHHHHHHHHHHHHHHHHhhcCCCCCCccccChhhHHHHhhhhhcccCCCccCCHHHHHHHHHHhhhhhhcc
Q psy568 584 LRLIPPLRGYADALTNAMVELYLASQEKFTQDMQPHYVYSPREMTRWVRGICEAIRPLESLTVEGLVRLWAHEALRLFQD 663 (1614)
Q Consensus 584 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~hY~F~lRdl~~v~~~i~~~~~~~~~~~~~~l~~lw~hE~~Rvf~D 663 (1614)
....|..+.+...++.+.+++|..+++++....+.||.|++|||.||++++..+.......+.-+++++|+||++|+|.|
T Consensus 1662 ~l~~~ef~~~se~~~~aSv~ly~~~k~~~k~~lq~~y~y~pReLtR~lr~i~~yaeT~~~t~~~slI~~wy~ea~r~~~d 1741 (3164)
T COG5245 1662 YLCFDEFNRLSEETMSASVELYLSSKDKTKFFLQMNYGYKPRELTRSLRAIFGYAETRIDTPDVSLIIDWYCEAIREKID 1741 (3164)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccChHHHHHHHHHHHhHHhcCCCCCcHHHHHHHHHHHHHHHHH
Confidence 77788889999999999999999999998888888999999999999999998654444445678999999999999999
Q ss_pred cCCChhHHHHHHHHHHHHHHhhcCCcchh-hcccCceeccCCcCCCcccChhHHHHHHHHHHHHHHhhhcccchhhHHHH
Q psy568 664 RLVNDVERQWTNENIDAVAMKYFSNIDKE-VLARPILYSNWLSKNYVPVGTTELREYVQARLKVFYEEELDVQLVLFDEV 742 (1614)
Q Consensus 664 RL~~~~d~~~~~~~l~~~~~~~f~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~l~~~~~~~~~~~lvlf~~~ 742 (1614)
||+.+.+..|+.+.+.+...++|+..+.. .....++|+..+..+...+...++..++++..+.|+.++...++|+++++
T Consensus 1742 RLV~qkE~st~~q~ly~~~~~~~~e~~~g~i~e~~I~fS~Il~~g~~~l~k~dl~~fvEe~~K~F~sshl~v~~V~~~~~ 1821 (3164)
T COG5245 1742 RLVQQKESSTSRQDLYDFGLRAIREMIAGHIGEAEITFSMILFFGMACLLKKDLAVFVEEVRKIFGSSHLDVEAVAYKDA 1821 (3164)
T ss_pred HHHHHHhcchHHHHHHHHHHHhhhhhhhcccchhhhhHHHHHhccHHHHhhhhHHHHHHHHHHHhcccCCCCceeeeHHH
Confidence 99999999999999999999999865443 44556677777776677777888999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCccEEEeecCCCChHHHHHHHHHHcCCeEEEEEecCCCChhcHHHHHHHHHHHhccCCCcEEEEEc
Q psy568 743 LDHVLRIDRIFRQPQGHLLLIGVSGAGKTTLSRFVAFMNGLSVFQIRAHNKYTGADFDEDLRTVLRRSGCKNEKIAFLLD 822 (1614)
Q Consensus 743 i~hi~ri~Ril~~p~gh~LLvG~~GsGKtsl~rlaA~~~~~~~~~i~~~~~~~~~df~~~lk~~l~~ag~~~~~~v~ll~ 822 (1614)
+.|+.|+.|+|.+-+||++|.|..|.|++-+++++||+++.+++++..|++|.+.||++-+|..+.++++.+.+.|++++
T Consensus 1822 l~HiLr~~R~l~~vggh~~l~g~~~~g~~~~~efvcwlN~~~m~e~~~hr~~~~~Df~d~lk~~~~~~~~~~~r~Cl~I~ 1901 (3164)
T COG5245 1822 LLHILRSRRGLLVVGGHGVLKGVLIRGACDAREFVCWLNPRNMREIFGHRDELTGDFRDSLKVQDLRRNIHGGRECLFIF 1901 (3164)
T ss_pred HHHHHHHHHHHHHhccchhhhhhhhhhhHHHHHHHHHhCccchhhhhcccccchhhHHHHHHHHHHhccccCCceEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccchHHHHHHhhccCCCCCCCChhhHHHHHHHhHHHHHHcCCCCCCHHHHHHHHHHHHhhcceEEEEECCCChhh
Q psy568 823 ESNVLESGFLERMNTLLANGEIPGLFEGDEYTTLMTQCKEGAQREGLMLDSNEELYKWFTQQVMKNLHVVFTMNPSSEGL 902 (1614)
Q Consensus 823 d~~i~~~~~le~in~lL~~G~v~~Lf~~eE~~~i~~~~~~~~~~~~~~~~s~~~l~~~f~~rv~~nlhivl~~sp~~~~~ 902 (1614)
|+....++|||++|+||++.++|+||+++|+..|.+.+|......+...||.++++++|+..+-+|+|+|++.-...+.-
T Consensus 1902 Esi~~es~fLe~~N~LL~n~~~~~lf~gne~~~I~~nlr~~~es~~L~~dTe~tlt~vFl~~~~~Nl~vVFs~c~s~d~~ 1981 (3164)
T COG5245 1902 ESIPVESSFLEDFNPLLDNNRFLCLFSGNERIRIPENLRFVFESTSLEKDTEATLTRVFLVYMEENLPVVFSACCSQDTS 1981 (3164)
T ss_pred cCCccchHHHHHhhhhhhccccchhccchhHHHHHHHHHhhhhccccccCCHHHHHHHHHHHHHhcCCeEEEEecCCCch
Confidence 99999999999999999999999999999999999999999988888889999999999999999999999775444433
Q ss_pred HHHhhhCccccccceecccCCCcHHHHHHHHHHhhcccCCCCCCCCCCCCCCcccc-cccCCCc-chhHHHHHHHHHHHh
Q psy568 903 KDRAATSPALFNRCVLNWFGDWSDTALYQVAKEFTSKIDLDGPQNWKAPDFFPSVC-SLVSTTP-SHRDSVINACVYVHQ 980 (1614)
Q Consensus 903 r~~~~~~PaL~~~~~i~wf~~W~~eaL~~va~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~h~ 980 (1614)
-.-.-.+|||.|+|+|||++.|..+.+.++|+..+...-.+. ..+-+. ++....+ ...+......+.+|.
T Consensus 1982 ~~a~i~spal~nrc~id~~~~wdt~~msq~An~V~~~s~~~~--------~v~~in~el~~~kg~~i~~~~~~~~vv~~~ 2053 (3164)
T COG5245 1982 VLAGIRSPALKNRCFIDFKKLWDTEEMSQYANSVETLSRDGG--------RVFFINGELGVGKGALISEVFGDDAVVIEG 2053 (3164)
T ss_pred HhhccCCHHHhhhhhhhhhhhccHHHHHHHHhhhhheeecCC--------cccccccccccCcchhhHHHHhhhheeecc
Confidence 344567999999999999999999999999996543211000 000000 0001111 122333333333443
Q ss_pred cHHHHHHHHHHhcCCccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy568 981 TLHKANARLSKRGSRTMAITPRHYLDFINHFVKLYREKCSELEEQQLHLNVGLGKIAETVEQVEEMQKSLAVKSQELQSK 1060 (1614)
Q Consensus 981 ~~~~~~~~~~~~~~r~~~~tp~~yl~~l~~f~~l~~~k~~~~~~~~~~l~~gL~kl~~~~~~v~~l~~~L~~~~~~l~~~ 1060 (1614)
+--..+- ..+ ..+.+|-+|.+++++|..+...+.++++....++..|+.|++|+...+.+++++|..+...|-.+
T Consensus 2054 r~f~~~m----~~G-s~~~s~~~fI~gl~~~~~~~~~~~~~l~~~~~~l~~g~~K~nE~~~g~~elke~Ls~~~~il~~k 2128 (3164)
T COG5245 2054 RGFEISM----IEG-SLGESKIKFIGGLKVYDARCVIYIEELDCTNVNLVEGVRKYNEYGRGMGELKEQLSNTVVILGVK 2128 (3164)
T ss_pred cceEEEe----eec-cCccCcceeecchHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhHHHHHHHHhcceeeeeec
Confidence 2211110 012 46789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhHHHhhcCCC
Q psy568 1061 NEAANLKLKEMIKDQQEAEKRKVQSQDIQAEIEKQTVEIAQKRVFVMEDLAQVEPAVMDAQQAVKEIKKQQLVELRSMAN 1140 (1614)
Q Consensus 1061 ~~~~~~~l~~i~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~l~~a~p~l~~A~~al~~l~~~dl~Eirs~~~ 1140 (1614)
.+.+++.++.+-.++++.|.+++.+++.++-+..+++++.+.+.-+.+....++|++-+|+..|.+|++.+|.|||+|.+
T Consensus 2129 eK~a~d~L~~~~~er~e~E~K~v~~e~~~~~l~~~ee~vrkrk~svmk~~s~~kPaVLEA~~~V~~ikka~L~EIrs~ir 2208 (3164)
T COG5245 2129 EKNADDALSGTPGERLEREVKSVFVEAPRDMLFLLEEEVRKRKGSVMKFKSSKKPAVLEAVLFVYKIKKASLREIRSFIR 2208 (3164)
T ss_pred ccccchhhhcChhhHHHHHHHHHHHHhHHHHHHHhHHHHHHHhhhhHhhhhccccHHHHHHHHHHHhhHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHhcCCCCCCHHHHHHHhchhhhHHHHHhhcCCC-CCcHHHHHHHHhhhcCCCCCCHHHHHhhhhchh
Q psy568 1141 PPSVVKLALESICLLLGENATDWKAIRAVVMRENFINSIVSNFNTE-MITDEVREKMHSRYLSNPDYSYEKANRASMACG 1219 (1614)
Q Consensus 1141 PP~~V~~v~eavc~Llg~~~~~W~~~k~~l~~~~F~~~l~~~~d~~-~i~~~~~~~l~~~~~~~~~f~~~~~~~~S~aa~ 1219 (1614)
||..|+.+||+||-|||-....|...|+++.+++|+..+. +|+.+ .++++...++++.|++||.|+.+.+.+||+||+
T Consensus 2209 pp~~l~i~me~Vc~LLgf~a~~w~~~qQ~LrrDDfi~~i~-~y~~e~e~~~~~Rr~~E~~~~Sdp~ft~~~lnRaskacG 2287 (3164)
T COG5245 2209 PPGDLCIEMEDVCDLLGFEAKIWFGEQQSLRRDDFIRIIG-KYPDEIEFDLEARRFREARECSDPSFTGSILNRASKACG 2287 (3164)
T ss_pred CcccceeeHHHHHHHhcchhHHhhhHHHHhhhhhHHHHhc-cCCceeecCHHHHHHHHHHhcCCCcchhHHhhhhhhccC
Confidence 9999999999999999999999999999999999999999 99876 799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q psy568 1220 PMVKWAIAQISYADMLKKVEPLRLELKSLEVQASENKAKGEETKDLITQLEKSIASYKDEYAQLIAQATAIKTDLDNVQA 1299 (1614)
Q Consensus 1220 ~L~~Wv~Ai~~y~~v~~~v~P~~~~l~~~~~~~~~~~~~l~~~~~~l~~~e~~l~~l~~~~~~~~~~~~~l~~~l~~~~~ 1299 (1614)
||.+|+.+.+.|.+|...+.|++++..+++-+...+++.+.+....-++++..+...|.+|+-...+.+..
T Consensus 2288 Pl~~Wl~~~cn~skvLE~~~plr~E~kRI~~E~~~~e~~L~~~~~~s~dl~~~~l~~r~~YSl~I~~Vh~~--------- 2358 (3164)
T COG5245 2288 PLKRWLVRECNRSKVLEVKIPLREEEKRIDGEAFLVEDRLTLGKGLSSDLMTFKLRRRSYYSLDILRVHGK--------- 2358 (3164)
T ss_pred cHHHHHHHHhhHHHhhhhcccchhHHHhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH---------
Confidence 99999999999999999999999999999999888899999999999999999999999999888887777
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhchhHHHHHHHHHHhhcccCHHhHH
Q psy568 1300 KFYEYAQLIAQATAIKTDLDNVQAKVERSMALLKSLGIERERWEATSETFRSQMATIIGDVLLSSAYLAYAGYFDQHYRQ 1379 (1614)
Q Consensus 1300 ~~~~~~~~~~~~~~l~~~~~~~~~rl~~a~~l~~~L~~e~~rW~~~~~~~~~~~~~l~gd~ll~aa~i~Y~G~f~~~~R~ 1379 (1614)
+.++...+.++.|.-.++..|..|+.+|....+++.+....++||++++|.+..|.|-++...|-
T Consensus 2359 ---------------~~~md~v~~~~~rsi~v~~~l~~e~~ew~g~~~~~pk~m~eL~g~~~~sS~~~~y~g~l~~~~Ra 2423 (3164)
T COG5245 2359 ---------------IADMDTVHKDVLRSIFVSEILINEDSEWGGVFSEVPKLMVELDGDGHPSSCLHPYIGTLGFLCRA 2423 (3164)
T ss_pred ---------------hhhhhhHHHhhhhceeeeeecceecccccchHhhccHHHHHhhcCCcchheeeeeeccccHHHHH
Confidence 67778888899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCCCC--CchhcccCCHHHHHhhhhcCCCCChhhHHHHHHHhhc-CCcccccCCchHHHHHHHHh
Q psy568 1380 SLFSTWNSHLIAAGIQFRPE--IALTEYLSSPDERLRWQGNALPSDHLCTENAIMLRRF-NRYPLIIDPSGQATEFILKE 1456 (1614)
Q Consensus 1380 ~l~~~w~~~l~~~~I~~~~~--~~~~~~l~~~~~~~~w~~~gLp~d~~s~eNaii~~~~-~r~PLliDPq~qa~~wlk~~ 1456 (1614)
.++......+.+ +.+.++. ..+.+....-.+-..|-.+ +.+++.||.-|+.+. .-.|+++||..+...-++++
T Consensus 2424 ~~~~~~~~~Is~-~F~~k~~~~r~fI~~~Vq~~e~~K~~~c---~tDy~lEN~~i~~~~qd~~~~L~dpss~ivt~~~~~ 2499 (3164)
T COG5245 2424 IEFGMSFIRISK-EFRDKEIRRRQFITEGVQKIEDFKEEAC---STDYGLENSRIRKDLQDLTAVLNDPSSKIVTSQRQM 2499 (3164)
T ss_pred HHHhhhHHHhcc-cCchHHHHHHHHHHHHHHHHHHHHHHHh---cchhcchhhHHHhhccccHhHhcCcHHHHHHhhHHH
Confidence 888877777753 4444433 2334444455555667665 567889998777655 46789999999999999999
Q ss_pred hccCCeEEeccCChhHHHHHHHHHHcCCcEEEeeccccCCcchhhhhhhhhccCCeEEEEeCCcccccCCCceEEEeeCC
Q psy568 1457 FESRKITKTSFLDDAFRKNLESALRFGNPLLVQDVENYDTILNPVLNRELRRTGGRVLITLGDQDIDISPTFVIFLSTRD 1536 (1614)
Q Consensus 1457 ~~~~~~~v~s~~~~~~~~~le~ai~~G~~lli~dve~~dp~l~~vl~~~~~~~~~~~~i~ig~~~i~~~~~F~l~l~T~~ 1536 (1614)
++++.-...|+....|...|++|+++|..++|.|.|.+||.+.|++.+++...+++..+.||+-+|..+-.|.+|..+..
T Consensus 2500 y~~kkail~sf~e~~f~~~L~~a~r~gs~~iI~daE~~d~~i~rlIk~ef~s~~~eV~v~i~~~eI~~S~~~~vf~~se~ 2579 (3164)
T COG5245 2500 YDEKKAILGSFREMEFAFGLSQARREGSDKIIGDAEALDEEIGRLIKEEFKSNLSEVKVMINPPEIVRSTVEAVFWLSEG 2579 (3164)
T ss_pred hccchhhhhhhhhHHHHHHHHHHHHhccceEecchhhhhhhhhhhhhHHHhcCCceEEEEECCCeeEEecceeEEEEeec
Confidence 99888888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccccceEEEEEeeChhhHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCC
Q psy568 1537 PTVEFPPDICSRVTFVNFTVTRSSLQSQCLNRVLKAERPDIDTKRSDLLKLQGEFHLRLRHLEKSLLGALNESKGKLL 1614 (1614)
Q Consensus 1537 ~~p~~~p~~~~~~tvinf~vt~~gLe~qlL~~vv~~e~p~le~~~~~l~~~~~~~~~~l~~le~~lL~~L~~~~g~il 1614 (1614)
+.-..+.-...++.++||+....|+|-|++..++..+.|++..++++|....+..+.+|..|+..+|..|.++.||++
T Consensus 2580 ~Sgdm~~~~~k~l~~v~Fvs~v~~~ET~i~d~~~~~~~~~lf~~~~~l~~lk~~~~l~L~~L~~~ll~~L~~s~~nm~ 2657 (3164)
T COG5245 2580 RSGDMGSIEWKQLIQVMFVSKVLGCETEIPDALEKLVSGPLFVHEKALNALKACGSLFLWVLARYLLAKLMLSISNME 2657 (3164)
T ss_pred CCCchhHHHHHHhHhhheehhhhhhhhhhhHHHHhhhccchhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhcccccc
Confidence 887788888899999999999999999999999999999999999999999999999999999999999999999985
No 3
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=100.00 E-value=3.8e-64 Score=565.97 Aligned_cols=268 Identities=39% Similarity=0.769 Sum_probs=226.2
Q ss_pred HHhhhcccchhhHHHHHHHHHHHHHHhccCCccEEEeecCCCChHHHHHHHHHHcCCeEEEEEecCCCChhcHHHHHHHH
Q psy568 727 FYEEELDVQLVLFDEVLDHVLRIDRIFRQPQGHLLLIGVSGAGKTTLSRFVAFMNGLSVFQIRAHNKYTGADFDEDLRTV 806 (1614)
Q Consensus 727 ~~~~~~~~~lvlf~~~i~hi~ri~Ril~~p~gh~LLvG~~GsGKtsl~rlaA~~~~~~~~~i~~~~~~~~~df~~~lk~~ 806 (1614)
||+.+..|++|+|+++++|++||+|+|++|+||+||+|.+||||+|++|||||++++++++|.++++|+..||++|||.+
T Consensus 1 yN~~n~~m~lVlf~~ai~hi~ri~RvL~~~~Gh~LLvG~~GsGr~sl~rLaa~i~~~~~~~i~~~~~y~~~~f~~dLk~~ 80 (268)
T PF12780_consen 1 YNESNTKMNLVLFDEAIEHIARISRVLSQPRGHALLVGVGGSGRQSLARLAAFICGYEVFQIEITKGYSIKDFKEDLKKA 80 (268)
T ss_dssp -------------HHHHHHHHHHHHHHCSTTEEEEEECTTTSCHHHHHHHHHHHTTEEEE-TTTSTTTHHHHHHHHHHHH
T ss_pred CCccccccceeeHHHHHHHHHHHHHHHcCCCCCeEEecCCCccHHHHHHHHHHHhccceEEEEeeCCcCHHHHHHHHHHH
Confidence 45566789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCCcEEEEEcCCcccccchHHHHHHhhccCCCCCCCChhhHHHHHHHhHHHHHHcCCCCCCHHHHHHHHHHHHh
Q psy568 807 LRRSGCKNEKIAFLLDESNVLESGFLERMNTLLANGEIPGLFEGDEYTTLMTQCKEGAQREGLMLDSNEELYKWFTQQVM 886 (1614)
Q Consensus 807 l~~ag~~~~~~v~ll~d~~i~~~~~le~in~lL~~G~v~~Lf~~eE~~~i~~~~~~~~~~~~~~~~s~~~l~~~f~~rv~ 886 (1614)
+++||++|+++||+++|+|+.++.|||+||+||++||||+||++||++.|++.+++.+++.|. .++++++|+||++|||
T Consensus 81 ~~~ag~~~~~~vfll~d~qi~~~~fLe~in~LL~sGeip~LF~~eE~~~i~~~l~~~~~~~~~-~~~~~~~~~~F~~rvr 159 (268)
T PF12780_consen 81 LQKAGIKGKPTVFLLTDSQIVDESFLEDINSLLSSGEIPNLFTKEELDNIISSLREEAKAEGI-SDSRESLYEFFIERVR 159 (268)
T ss_dssp HHHHHCS-S-EEEEEECCCSSSCHHHHHHHHHHHCSS-TTTS-TCHHHHHHHHHHHHHHHCT---SSHHHHHHHHHHHHC
T ss_pred HHHHhccCCCeEEEecCcccchHhHHHHHHHHHhCCCCCCCccHHHHHHHHHHhHHHHHHcCC-CCchHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999986 4789999999999999
Q ss_pred hcceEEEEECCCChhhHHHhhhCccccccceecccCCCcHHHHHHHHHHhhcccCCCCCCCCCCCCCCcccccccCCCcc
Q psy568 887 KNLHVVFTMNPSSEGLKDRAATSPALFNRCVLNWFGDWSDTALYQVAKEFTSKIDLDGPQNWKAPDFFPSVCSLVSTTPS 966 (1614)
Q Consensus 887 ~nlhivl~~sp~~~~~r~~~~~~PaL~~~~~i~wf~~W~~eaL~~va~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 966 (1614)
+|||||+||||.|+.||.|+|+||+|+|||+||||++||+|||.+||++++++.+.. .++
T Consensus 160 ~nLHivl~~sp~~~~~r~~~~~fPaL~~~ctIdW~~~W~~eaL~~Va~~~l~~~~~~--------------------~~~ 219 (268)
T PF12780_consen 160 KNLHIVLCMSPVGPNFRDRCRSFPALVNCCTIDWFDPWPEEALLSVANKFLSDIELL--------------------SEE 219 (268)
T ss_dssp CCEEEEEEESTTTTCCCHHHHHHCCHHHHSEEEEEES--HHHHHHHHHHHCCHHHTS--------------------S--
T ss_pred hheeEEEEECCCCchHHHHHHhCcchhcccEEEeCCcCCHHHHHHHHHHHHHhhccc--------------------chh
Confidence 999999999999999999999999999999999999999999999999999876531 134
Q ss_pred hhHHHHHHHHHHHhcHHHHHHHHHHhcCCccccCchhHHHHHHHHHHHH
Q psy568 967 HRDSVINACVYVHQTLHKANARLSKRGSRTMAITPRHYLDFINHFVKLY 1015 (1614)
Q Consensus 967 ~~~~~~~~~~~~h~~~~~~~~~~~~~~~r~~~~tp~~yl~~l~~f~~l~ 1015 (1614)
.+++++++|+++|.++.+++..|+.+.+|++|+||++|++||++|++|+
T Consensus 220 ~~~~l~~~~~~iH~sv~~~s~~y~~~~~r~~yvTP~syL~~i~~f~~Ll 268 (268)
T PF12780_consen 220 LKKSLAEIMVFIHQSVEEISRKYLQELRRYNYVTPKSYLEFIKTFKNLL 268 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCS------HHHHHHHHH------
T ss_pred HHHHHHHHHHHHhccchHhHHHHHHHcCCcceECcHHHHHHHhhhccCC
Confidence 6789999999999999999999999999999999999999999999875
No 4
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=100.00 E-value=1.4e-60 Score=563.53 Aligned_cols=337 Identities=36% Similarity=0.632 Sum_probs=308.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy568 1027 LHLNVGLGKIAETVEQVEEMQKSLAVKSQELQSKNEAANLKLKEMIKDQQEAEKRKVQSQDIQAEIEKQTVEIAQKRVFV 1106 (1614)
Q Consensus 1027 ~~l~~gL~kl~~~~~~v~~l~~~L~~~~~~l~~~~~~~~~~l~~i~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~k~~~ 1106 (1614)
+||++||+||.+|..+|+.|+.+|..++++|+++++++++++++|..+++++++++..+.+.+++++.+..++...+++|
T Consensus 1 erl~~GL~KL~et~~~V~~m~~~L~~~~~~L~~k~~e~e~ll~~i~~~~~~a~~~~~~~~~ee~~~~~~~~ei~~~~~~a 80 (344)
T PF12777_consen 1 ERLENGLDKLKETEEQVEEMQEELEEKQPELEEKQKEAEELLEEIEKEQEEAEKKKAIVEEEEEEAEKQAKEIEEIKEEA 80 (344)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999998888888889999999999999999
Q ss_pred HHHhhhhhHHHHHHHHHHHHhhhhhHHHhhcCCCCcHHHHHHHHHHHHhcCCC-----CCCHHHHHHHhch-hhhHHHHH
Q psy568 1107 MEDLAQVEPAVMDAQQAVKEIKKQQLVELRSMANPPSVVKLALESICLLLGEN-----ATDWKAIRAVVMR-ENFINSIV 1180 (1614)
Q Consensus 1107 ~~~l~~a~p~l~~A~~al~~l~~~dl~Eirs~~~PP~~V~~v~eavc~Llg~~-----~~~W~~~k~~l~~-~~F~~~l~ 1180 (1614)
+++|++|+|+|++|.+||++|+++||+|||||++||++|+.||+|||+|||+. +++|.++|++|++ ++|+++|.
T Consensus 81 ~~~L~~a~P~L~~A~~al~~l~k~di~Eiks~~~PP~~V~~V~~aV~iLl~~~~~~~k~~~W~~ak~~l~~~~~Fl~~L~ 160 (344)
T PF12777_consen 81 EEELAEAEPALEEAQEALKSLDKSDISEIKSYANPPEAVKLVMEAVCILLGPKGKLPKDTSWESAKKLLSDSDNFLQRLK 160 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHCS-HHHHHHHHHSSS--HHHHHHHHHHHHHTT-S-SEE---HHHHHHCHHCSSTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhCCCcHHHHHHHHHHhhHHhccccccccccHHHHHHHHHhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999863 4689999999998 58999999
Q ss_pred hhcCCCCCcHHHHHHHHhhhcCCCCCCHHHHHhhhhchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy568 1181 SNFNTEMITDEVREKMHSRYLSNPDYSYEKANRASMACGPMVKWAIAQISYADMLKKVEPLRLELKSLEVQASENKAKGE 1260 (1614)
Q Consensus 1181 ~~~d~~~i~~~~~~~l~~~~~~~~~f~~~~~~~~S~aa~~L~~Wv~Ai~~y~~v~~~v~P~~~~l~~~~~~~~~~~~~l~ 1260 (1614)
+||+++|++.++.+|+ +|+++|+|+|+.+.++|.||++||.||+||+.|++|+++|+|++++++++++++..++++|+
T Consensus 161 -~fd~~~i~~~~~~~l~-~~~~~p~F~~e~v~~~S~Aa~~Lc~WV~A~~~Y~~v~~~V~P~~~~l~~a~~~l~~~~~~L~ 238 (344)
T PF12777_consen 161 -NFDKDNIPEATIKKLK-KYLKNPDFNPEKVRKASKAAGSLCKWVRAMVKYYEVNKEVEPKRQKLEEAEAELEEAEEQLA 238 (344)
T ss_dssp -HS-GGG--HHHHHHHH-CTTTSTTSSHHHHHHH-TTHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHH
T ss_pred -hhccccccHHHHHHHH-HHhcCCCCCHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhh
Q psy568 1261 ETKDLITQLEKSIASYKDEYAQLIAQATAIKTDLDNVQAKFYEYAQLIAQATAIKTDLDNVQAKVERSMALLKSLGIERE 1340 (1614)
Q Consensus 1261 ~~~~~l~~~e~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~rl~~a~~l~~~L~~e~~ 1340 (1614)
+.+..+..++.+++.|+.+|+..+.+++.+ +.+++.++.||.||.+|+++|++|+.
T Consensus 239 ~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l------------------------~~~~~~~~~kl~rA~~Li~~L~~E~~ 294 (344)
T PF12777_consen 239 EKQAELAELEEKLAALQKEYEEAQKEKQEL------------------------EEEIEETERKLERAEKLISGLSGEKE 294 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHhhhccHHHHHhhhcchhh
Confidence 999999999999999999999888777776 77888999999999999999999999
Q ss_pred hHHHHHHHHHHhhhhchhHHHHHHHHHHhhcccCHHhHHHHHH-HHHHHH
Q psy568 1341 RWEATSETFRSQMATIIGDVLLSSAYLAYAGYFDQHYRQSLFS-TWNSHL 1389 (1614)
Q Consensus 1341 rW~~~~~~~~~~~~~l~gd~ll~aa~i~Y~G~f~~~~R~~l~~-~w~~~l 1389 (1614)
||.+.+..++.+..+++|||||+|||++|+|||+++||+.+++ .|.++|
T Consensus 295 RW~~~~~~l~~~~~~l~GD~llaaa~isY~G~f~~~~R~~l~~~~W~~~l 344 (344)
T PF12777_consen 295 RWSEQIEELEEQLKNLVGDSLLAAAFISYLGPFTPEYRQELLKKMWKPYL 344 (344)
T ss_dssp CCHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCTSHHHHHHHHHHH-----
T ss_pred hHHHHHHHHHHHhcccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhccccC
Confidence 9999999999999999999999999999999999999999995 598764
No 5
>PF12781 AAA_9: ATP-binding dynein motor region D5; PDB: 3VKG_A 3VKH_C 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=100.00 E-value=1.8e-52 Score=460.50 Aligned_cols=207 Identities=43% Similarity=0.801 Sum_probs=179.0
Q ss_pred ccCCHHHHHhhhhcCCCCChhhHHHHHHHhhcCCcccccCCchHHHHHHHHhhccCCeEEeccCChhHHHHHHHHHHcCC
Q psy568 1405 YLSSPDERLRWQGNALPSDHLCTENAIMLRRFNRYPLIIDPSGQATEFILKEFESRKITKTSFLDDAFRKNLESALRFGN 1484 (1614)
Q Consensus 1405 ~l~~~~~~~~w~~~gLp~d~~s~eNaii~~~~~r~PLliDPq~qa~~wlk~~~~~~~~~v~s~~~~~~~~~le~ai~~G~ 1484 (1614)
+|+++.+++.|+.+|||+|.+|+|||+|+.++.||||+|||||||.+||+++++ +++.++++++++|.++||+|+++|+
T Consensus 1 ~L~d~~~i~~W~~~GLP~D~~siENa~i~~~~~r~PLiIDPq~qa~~wi~~~~~-~~l~v~~~~~~~~~~~le~air~G~ 79 (228)
T PF12781_consen 1 MLSDDVEIRQWISQGLPSDQLSIENAIILKNSRRWPLIIDPQGQANKWIKNMYK-NDLEVTSFSDSNFLKQLENAIRFGK 79 (228)
T ss_dssp ---------HHHHCT--SSHHHHHHHHHCCC-SSEEEEESTTTCHHHHHHHHCC-CCEEEEETTSTCHHHHHHHHHHCT-
T ss_pred CCccccchhhHHhcCCCCCchHHhhHHHHhhcCCCceEECCchHHHHHHHHhhh-hcccccccchHhHHHHHHHHHHcCC
Confidence 478999999999999999999999999999999999999999999999999875 4699999999999999999999999
Q ss_pred cEEEeec-cccCCcchhhhhhhhhccCCeEEEEeCCcccccCCCceEEEeeCCCCCCCCcccccceEEEEEeeChhhHHH
Q psy568 1485 PLLVQDV-ENYDTILNPVLNRELRRTGGRVLITLGDQDIDISPTFVIFLSTRDPTVEFPPDICSRVTFVNFTVTRSSLQS 1563 (1614)
Q Consensus 1485 ~lli~dv-e~~dp~l~~vl~~~~~~~~~~~~i~ig~~~i~~~~~F~l~l~T~~~~p~~~p~~~~~~tvinf~vt~~gLe~ 1563 (1614)
||||+|| |.+||+|+|+|.|++++.| + +|++||+.|+|||+|||||+|+++||||+|++++++|+|||++|++|||+
T Consensus 80 ~llIe~v~e~~dp~l~plL~k~~~~~g-~-~i~igd~~v~~~~~FrL~L~T~~~~p~~~pe~~s~vtviNFtvt~~gLe~ 157 (228)
T PF12781_consen 80 PLLIENVGESLDPILDPLLRKNIIKSG-K-FIKIGDKEVDYNPNFRLYLTTKLPNPHYPPEVSSKVTVINFTVTQEGLED 157 (228)
T ss_dssp EEEEC-GCSCHHCTCHHHHTTT-EE-S-S-EEESSSSEEE--SS-EEEEEESSTTSHHHHHHHHCSEEEE----CHHHHH
T ss_pred eeeecccccccChhhhhhhcchhccCC-c-eEEecCeEEEeeccceEEEeecCCCCCCChhhhceeeEEEEEecHHHHHH
Confidence 9999999 7899999999999988765 4 79999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCC
Q psy568 1564 QCLNRVLKAERPDIDTKRSDLLKLQGEFHLRLRHLEKSLLGALNESKGKLL 1614 (1614)
Q Consensus 1564 qlL~~vv~~e~p~le~~~~~l~~~~~~~~~~l~~le~~lL~~L~~~~g~il 1614 (1614)
|||+.+|++|+|+||++|.+|+++.+++|.+|++|||+||+.|++|+||||
T Consensus 158 qll~~vv~~e~PeLe~~r~~L~~~~~~~k~~L~~lEd~lL~~Ls~s~g~iL 208 (228)
T PF12781_consen 158 QLLSIVVKHERPELEEQRNELLKEIAENKIQLKELEDQLLELLSNSEGNIL 208 (228)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCTSSCCC
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence 999999999999999999999999999999999999999999999999997
No 6
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=100.00 E-value=3.1e-50 Score=458.14 Aligned_cols=261 Identities=40% Similarity=0.685 Sum_probs=218.7
Q ss_pred ccCCcceeeeCcchhhHHHHHHHHHhcCCCEEEecCCCCchHHHHHHHHhcCCCCc--eEEEEcccCCCHHHHHhHhhcc
Q psy568 389 KVAASDVVVPTLDTVRHESLLYTWLAEHKPLVLCGPPGSGKTMTLLSALRALPDME--VVSLNFSSATTPELLLKTFDHY 466 (1614)
Q Consensus 389 ~~~~~~~~vpT~~t~r~~~ll~~~l~~~~~vLL~Gp~GtGKT~lv~~~~~~l~~~~--~~~i~~s~~t~~~~l~~~~~~~ 466 (1614)
++++.+++|||+||+|+.++++.++.+++||||+||+|||||++++++++.+.+.. ...++||+.|++..++..+++.
T Consensus 6 ~~~~~~~~VpT~dt~r~~~ll~~l~~~~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tts~~~q~~ie~~ 85 (272)
T PF12775_consen 6 EMPFNEILVPTVDTVRYSYLLDLLLSNGRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTTSNQLQKIIESK 85 (272)
T ss_dssp -------T---HHHHHHHHHHHHHHHCTEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHHHHHHHHCCCTT
T ss_pred ccccceEEeCcHHHHHHHHHHHHHHHcCCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCCHHHHHHHHhhc
Confidence 56788999999999999999999999999999999999999999999999886655 4579999999999999999999
Q ss_pred cceeecCCccccccccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCC
Q psy568 467 CEYRKTPNGVILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDP 546 (1614)
Q Consensus 467 ~~~~~~~~g~~~~p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~ 546 (1614)
+++++ |..++|+ .|+++|+||||+|||.+|+||+|+++|+|||++|+|||||+++..|+.+.+++++|||+|+ +
T Consensus 86 l~k~~---~~~~gP~-~~k~lv~fiDDlN~p~~d~ygtq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~--~ 159 (272)
T PF12775_consen 86 LEKRR---GRVYGPP-GGKKLVLFIDDLNMPQPDKYGTQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPT--G 159 (272)
T ss_dssp ECECT---TEEEEEE-SSSEEEEEEETTT-S---TTS--HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESST--T
T ss_pred EEcCC---CCCCCCC-CCcEEEEEecccCCCCCCCCCCcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCC--C
Confidence 98765 7777886 6899999999999999999999999999999999999999988999999999999999986 4
Q ss_pred CCCCCcccccccccEEEecCCChhHHHHHHHHHHHhhhh---cchhhhhhHHHHHHHHHHHHHHHHhhcCC-CCCCcccc
Q psy568 547 GRKPLSHRFLRHVPVIYVDYPGETSLKQIYGTFSRAMLR---LIPPLRGYADALTNAMVELYLASQEKFTQ-DMQPHYVY 622 (1614)
Q Consensus 547 g~~~l~~r~~r~f~~i~i~~p~~~~l~~I~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~hY~F 622 (1614)
||+.+++||+|||+++++++|+.+++..||++++..++. +...+...++.++++++++|..+++.|.| |.++||.|
T Consensus 160 Gr~~is~R~~r~f~i~~~~~p~~~sl~~If~~il~~~l~~~~f~~~v~~~~~~lv~ati~ly~~i~~~~~ptp~k~HY~F 239 (272)
T PF12775_consen 160 GRNPISPRFLRHFNILNIPYPSDESLNTIFSSILQSHLKNGGFPEDVQKLADKLVQATIELYQKIRQQFLPTPSKPHYTF 239 (272)
T ss_dssp T--SHHHHHHTTEEEEE----TCCHHHHHHHHHHHHHTCHTTSSGGGCCCHHHHHHHHHHHHHHHHHHS-TTTTCTTTTS
T ss_pred CCCCCChHHhhheEEEEecCCChHHHHHHHHHHHhhhcccCCCChHHHHHHHHHHHHHHHHHHhhhcccCCCCccceeec
Confidence 899999999999999999999999999999999998874 55677889999999999999999999976 68999999
Q ss_pred ChhhHHHHhhhhhcccCCCccCCHHHHHHHHHHh
Q psy568 623 SPREMTRWVRGICEAIRPLESLTVEGLVRLWAHE 656 (1614)
Q Consensus 623 ~lRdl~~v~~~i~~~~~~~~~~~~~~l~~lw~hE 656 (1614)
|+||++||++|++.+ .+....+...+++||+||
T Consensus 240 nlRDlsrv~qGil~~-~~~~~~~~~~l~rLW~HE 272 (272)
T PF12775_consen 240 NLRDLSRVFQGILLA-SPESIKTKESLLRLWVHE 272 (272)
T ss_dssp HHHHHHHHHHHHHHH-HCTSSS-SHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhc-ChhhcCCHHHheEeecCC
Confidence 999999999999987 566677888999999999
No 7
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=100.00 E-value=3.4e-37 Score=376.11 Aligned_cols=649 Identities=21% Similarity=0.264 Sum_probs=387.0
Q ss_pred HHHHHhccEEEEecCCCCChhhHHHHHHHHHHHhh-----------c------CCce----------------EEEeCCC
Q psy568 37 YQISNLNHGLMMVGPSGSGKSTAWKVLLKALERYE-----------G------VEGV----------------AHIIDPK 83 (1614)
Q Consensus 37 ~e~~~~r~gVmlvG~~gsGKTt~~~~L~~al~~~~-----------~------~~~~----------------~~~inPk 83 (1614)
..++.....|+|||.+||||||+.++|+..+.+.- | .+++ ..+-+..
T Consensus 1167 ~~Cl~~kepvlLVgetgcgktt~cqvLa~~~~rel~~~nahq~Te~gdiigaqrPVrnrse~~y~l~k~l~~a~nV~~~~ 1246 (4600)
T COG5271 1167 GKCLVTKEPVLLVGETGCGKTTGCQVLADTFRRELNLMNAHQETENGDIIGAQRPVRNRSETGYGLTKALDIASNVFKTR 1246 (4600)
T ss_pred HHhhcccCceEEEeecCcchhHHHHHHHHHHHHHHHHHHHhhhccccccccccccchhhhhhhhhHHHHHHHHHhhhhhh
Confidence 44566777899999999999999999999886520 0 0100 0111222
Q ss_pred CCC---cCcccccccC---------------CCCccccchHHHHHHHHHhhhcCCCCCceEEEEc--cCCChhhhhhhhh
Q psy568 84 AIS---KEALYGVLDP---------------NTREWTDGLFTHILRRIIDNVRGEISKRQWIIFD--GDVDPEWVENLNS 143 (1614)
Q Consensus 84 ais---~~eLyG~~d~---------------~t~eW~DGvls~i~r~~~~~~~~~~~~~~WivfD--G~vd~~WiE~lns 143 (1614)
-++ +.+.|..-|. .--||+||.|..+||.. ..+++| .-.|....|.|||
T Consensus 1247 didL~e~~~~~ssSdn~nls~~~e~~I~k~r~lfeW~DGpLV~AMk~G-----------dfFLlDEIsLAdDSVLERLNS 1315 (4600)
T COG5271 1247 DIDLIEMHRGISSSDNDNLSFIGESFIFKNRKLFEWKDGPLVKAMKCG-----------DFFLLDEISLADDSVLERLNS 1315 (4600)
T ss_pred cchHHHHHhhhcccccccHHHHHHHHHHHhhhheeeccchHHHHHhcC-----------CeeEeeeccccchHHHHHHHH
Confidence 222 2333333331 11489999999999885 578888 4679999999999
Q ss_pred hhcCCCccccC-CC---ceeeCCCCceEEEEeccc------cccCccccccceeEEecCcccchHHHHHHHHHhhhcccc
Q psy568 144 VLDDNKLLTLP-NG---ERLSLPPNIRIMFEVQDL------KYATLATVSRCGMIWFSEDVLSTEMIFENYLSRLRNIAL 213 (1614)
Q Consensus 144 vLDdnk~L~L~-nG---eri~l~~~~~~iFEv~dL------~~ASPAtVSRcgmv~~~~~~l~~~~~~~~~~~~~~~~~~ 213 (1614)
||.-.+.|+|+ -| +-+.-+++.+|+ -|.+- +..|||.-.|+.-||+++-. ...+++.-...++....
T Consensus 1316 VLE~~RtL~l~E~g~a~~~vtA~dgF~ff-ATMNPGGDyGKkELSPALRNRFTEiwvp~m~-D~~d~~~iv~~~l~~~~- 1392 (4600)
T COG5271 1316 VLESQRTLYLTETGNAAEEVTAHDGFRFF-ATMNPGGDYGKKELSPALRNRFTEIWVPVMS-DEADLIFIVLVDLRFGE- 1392 (4600)
T ss_pred hhcccceEEEeecCCccceeeeccCceEE-EeeCCCCccchhhCCHHHhcccceEeecccc-cccchhhhhhhhhhcCc-
Confidence 99999999997 44 788889999954 44443 35699999999999997642 22333333333322110
Q ss_pred CCcccchhhhHhhccCCCCCCcccchhHHHHHHHHHHhhhccCCcchHHHHHH---HhhhcccccccchHHHHHHHHHHH
Q psy568 214 DDIDDDSSLLITVDATGKAPDDVLSPALTLQQDVASILSTHFAPDGLVVRALD---YAMQQEHIMDFTRLRALGSLFSML 290 (1614)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l 290 (1614)
-+.-.|..+....+..-+- .+.--.+...+. |+... .+.+.+.+ ++......+
T Consensus 1393 --------------------vdla~p~ve~~kw~a~~l~--~~~vISiRd~l~~VEFIn~~-~i~d~~~~-l~~~~smvf 1448 (4600)
T COG5271 1393 --------------------VDLAKPSVETFKWLARSLL--YNDVISIRDLLLIVEFINRR-EILDLNLV-LFNAVSMVF 1448 (4600)
T ss_pred --------------------ccccchHHHHHHHHHHHhh--ccCceeHHHHHHHHHHHHHH-HhhhhhhH-hhhhhhHHH
Confidence 0111233222222222110 000001122221 21111 11111100 000000000
Q ss_pred HHHhhhhhhcCCCCCCCCCChHHHHhHHHHHHHHHHhhhc--ccCCCccchHHHHHHHhhhccccCCCCCCCeeEEEEec
Q psy568 291 NQGVRNVLQYNHSHSDFPLSQDVVERYIPRILVYSLLWSF--AGDGKLKMRSDFGNFLRSVTTITLPATSSDIVDFEVNI 368 (1614)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~fa~~Ws~--gg~l~~~~r~~f~~~l~~~~~~~~p~~~~~v~d~~~~~ 368 (1614)
..++. -|+.+..- |.++ ...|+..-.|+..+.+..+-.....+-..||..
T Consensus 1449 idalG---------------------------~fst~~laen~~dl-~s~r~~c~v~l~~L~g~~i~~~~~~~n~i~f~d 1500 (4600)
T COG5271 1449 IDALG---------------------------EFSTVALAENGLDL-ESERQRCFVWLEALEGAGIKGIEADVNAIYFED 1500 (4600)
T ss_pred HHHhc---------------------------ccchhHHhhcccch-hHHHHHHHHHHHHhccCCceeeecccceeEecc
Confidence 00000 00000000 0011 122333334444443322222222222333322
Q ss_pred CCCceeecCC-CCccccccccccCCcceeeeCcchhhHHHHHHHHHhcCCCEEEecCCCCchHHHHHHHHhcCCCCceEE
Q psy568 369 KNGEWVPWSN-KVPQIEVETQKVAASDVVVPTLDTVRHESLLYTWLAEHKPLVLCGPPGSGKTMTLLSALRALPDMEVVS 447 (1614)
Q Consensus 369 ~~~~~~~w~~-~~~~~~~~~~~~~~~~~~vpT~~t~r~~~ll~~~l~~~~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~ 447 (1614)
+... - .+ ..|.+. +.+ ..+..=..+|.|..++.-+-.++..++|+||.|.||+|||+++..+++.. |..+++
T Consensus 1501 ~~~f--~-g~f~iP~~~-~~~--S~Ssf~l~spTT~~Nl~rVlRAmqv~kpilLEGsPGVGKTSlItaLAr~t-G~kliR 1573 (4600)
T COG5271 1501 ERMF--G-GDFVIPYLV-EHH--SSSSFDLESPTTTVNLRRVLRAMQVGKPILLEGSPGVGKTSLITALARKT-GKKLIR 1573 (4600)
T ss_pred ccee--c-ccccccccc-ccc--cCccccccCCchHHhHHHHHHHHhcCCceeecCCCCccHHHHHHHHHHHh-cCceEE
Confidence 1100 0 00 011110 111 11122234455666777777889999999999999999999998888776 889999
Q ss_pred EEcccCCCHHHHHhHhhccc--ceeecCCccccccccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCc-eeeCC
Q psy568 448 LNFSSATTPELLLKTFDHYC--EYRKTPNGVILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRG-FYRPA 524 (1614)
Q Consensus 448 i~~s~~t~~~~l~~~~~~~~--~~~~~~~g~~~~p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~-~~~~~ 524 (1614)
+|.|.+|+--++.|..-..- ..-.+.+.+++.+++.|.|+++ ||+|+ ++|+++|-|..++||++ .|.|.
T Consensus 1574 INLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~G~WVlL--DEiNL------aSQSVlEGLNacLDhR~eayIPE 1645 (4600)
T COG5271 1574 INLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRDGGWVLL--DEINL------ASQSVLEGLNACLDHRREAYIPE 1645 (4600)
T ss_pred eeccccchHHHHhCCCCCcccCceeEecccHHHHHhhcCCEEEe--ehhhh------hHHHHHHHHHHHHhhcccccccc
Confidence 99999999877777642211 1122345788899999999998 99999 99999999999999987 77764
Q ss_pred -CCceEeecCeEEEEeecCCC-CCCCCCCcccccccccEEEecCCChhHHHHHHHHHHHhhhhcchhhhhhHHHHHHHHH
Q psy568 525 -DKQWVSLERIQCVGACNPPT-DPGRKPLSHRFLRHVPVIYVDYPGETSLKQIYGTFSRAMLRLIPPLRGYADALTNAMV 602 (1614)
Q Consensus 525 -~~~~~~~~~~~~iaa~n~~~-~~g~~~l~~r~~r~f~~i~i~~p~~~~l~~I~~~~~~~~~~~~~~~~~~~~~l~~~~~ 602 (1614)
+..+..+|+++++||.||.. ++||+.||..|..||.+++++..+.+++..|....++..- .+..-++++.+-
T Consensus 1646 ld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~nRFsvV~~d~lt~dDi~~Ia~~~yp~v~------~d~~~kiik~ms 1719 (4600)
T COG5271 1646 LDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLNRFSVVKMDGLTTDDITHIANKMYPQVN------EDWRLKIIKFMS 1719 (4600)
T ss_pred ccceeeccCCeeeeeecCchhcCCCcccCCHHHhhhhheEEecccccchHHHHHHhhCCccC------hHHHHHHHHHHH
Confidence 45888999999999999986 6799999999999999999999999999999776554321 133445555555
Q ss_pred HHHHHHHhh--cCCCCCCccccChhhHHHHhhhhhcccCCCccCCHHHHHHHHHHhhhhhhcccCCChhHHHHHHHHHHH
Q psy568 603 ELYLASQEK--FTQDMQPHYVYSPREMTRWVRGICEAIRPLESLTVEGLVRLWAHEALRLFQDRLVNDVERQWTNENIDA 680 (1614)
Q Consensus 603 ~~~~~~~~~--~~~~~~~hY~F~lRdl~~v~~~i~~~~~~~~~~~~~~l~~lw~hE~~Rvf~DRL~~~~d~~~~~~~l~~ 680 (1614)
.+-.++++. |... .+-+.||+||-.||.+.+-++ ......+...++...+-.-+| .-+||....+++.+
T Consensus 1720 ~lqd~i~k~~~~g~~-gsPwefnlrdTLRwl~llNq~-~~~edvd~~dfid~~V~~r~r-------tv~dr~rt~~l~~e 1790 (4600)
T COG5271 1720 RLQDNIEKDISFGSF-GSPWEFNLRDTLRWLILLNQV-GTLEDVDTSDFIDESVVRRMR-------TVEDRVRTCELFKE 1790 (4600)
T ss_pred HHHHhhhhhhcccCC-CCCeEEehHHHHHHHHHhhcc-CccccCCHHHHHHHHHHHHhh-------hHhhhhHHHHHHHH
Confidence 555555443 3223 334999999999999987765 333444565665554444444 44555666666666
Q ss_pred HHHhhcCCcchhhcccCceeccCCcCCCcccChhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHHhccCCccE
Q psy568 681 VAMKYFSNIDKEVLARPILYSNWLSKNYVPVGTTELREYVQARLKVFYEEELDVQLVLFDEVLDHVLRIDRIFRQPQGHL 760 (1614)
Q Consensus 681 ~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~l~~~~~~~~~~~lvlf~~~i~hi~ri~Ril~~p~gh~ 760 (1614)
++.++=+. ...|. ++..|..++-+-. -+..++ ......++++...-+.-+..+.|++.+.. ++
T Consensus 1791 vfg~~~~r--------~~~f~--ls~~~~kv~~sv~-----vr~~er-r~~l~~~~~~l~sql~vlEsV~~cIn~nw-Pl 1853 (4600)
T COG5271 1791 VFGDYEPR--------TIGFS--LSSQCFKVGHSVT-----VRMKER-RPRLDDSFVLLHSQLQVLESVMRCINMNW-PL 1853 (4600)
T ss_pred HhcccCcc--------ccccc--chhhHhhcCceEE-----Eecccc-CCCcccchhhhhhhhHHHHHHHHHHhcCC-CE
Confidence 64432211 01110 1112222211000 000000 00111235666666666777788888765 69
Q ss_pred EEeecCCCChHHHHHHHHHHcCCeEEEEEecCCCChhc
Q psy568 761 LLIGVSGAGKTTLSRFVAFMNGLSVFQIRAHNKYTGAD 798 (1614)
Q Consensus 761 LLvG~~GsGKtsl~rlaA~~~~~~~~~i~~~~~~~~~d 798 (1614)
+|||++|+|||++.|++|.++|.++-..+++++.+.-|
T Consensus 1854 IlvG~t~~GKt~~lRflasI~G~~~~~f~~nsDtD~mD 1891 (4600)
T COG5271 1854 ILVGDTGVGKTSLLRFLASIFGQEMTLFNCNSDTDVMD 1891 (4600)
T ss_pred EEEcCCCCchHHHHHHHHHHhcccceEEeccCCchHHH
Confidence 99999999999999999999999888888887766444
No 8
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=100.00 E-value=4.5e-33 Score=340.46 Aligned_cols=728 Identities=21% Similarity=0.279 Sum_probs=419.8
Q ss_pred hHHHH-HHHHH-HHHHhccEEEEecCCCCChhhHHHHHHHHHHHhhcCCceEEEeCCCCCCcCcccccccCCC-C--ccc
Q psy568 28 PWMEK-VLQLY-QISNLNHGLMMVGPSGSGKSTAWKVLLKALERYEGVEGVAHIIDPKAISKEALYGVLDPNT-R--EWT 102 (1614)
Q Consensus 28 ~~~~K-~~qL~-e~~~~r~gVmlvG~~gsGKTt~~~~L~~al~~~~~~~~~~~~inPkais~~eLyG~~d~~t-~--eW~ 102 (1614)
+||+| .+.+- .+...+-.|+|-|||.||||+++.-|++-... + .+.+-|+.--...|..|.|-.+. + +++
T Consensus 871 PfVqkn~ln~~Ra~s~~~fP~LiQGpTSSGKTSMI~yla~~tgh----k-fVRINNHEHTdlqeYiGTyvTdd~G~lsFk 945 (4600)
T COG5271 871 PFVQKNYLNTMRAASLSNFPLLIQGPTSSGKTSMILYLARETGH----K-FVRINNHEHTDLQEYIGTYVTDDDGSLSFK 945 (4600)
T ss_pred HHHHHHHHHHHHHHhhcCCcEEEecCCCCCcchHHHHHHHHhCc----c-EEEecCcccchHHHHhhceeecCCCceeee
Confidence 68887 44443 44556668999999999999999999987421 1 34566788889999999975433 2 699
Q ss_pred cchHHHHHHHHHhhhcCCCCCceEEEEcc--CCChhhhhhhhhhhcCCCccccCCCcee-eCCCCceEEEEeccccccCc
Q psy568 103 DGLFTHILRRIIDNVRGEISKRQWIIFDG--DVDPEWVENLNSVLDDNKLLTLPNGERL-SLPPNIRIMFEVQDLKYATL 179 (1614)
Q Consensus 103 DGvls~i~r~~~~~~~~~~~~~~WivfDG--~vd~~WiE~lnsvLDdnk~L~L~nGeri-~l~~~~~~iFEv~dL~~ASP 179 (1614)
.|+|.-++|+. .|||+|- -.-+...|.||.+||||+-|..|.-+-+ .-+|+.+ +|-|++- |
T Consensus 946 EGvLVeAlR~G-----------yWIVLDELNLApTDVLEaLNRLLDDNRelfIPETqevV~PHp~F~-lFATQNp----p 1009 (4600)
T COG5271 946 EGVLVEALRRG-----------YWIVLDELNLAPTDVLEALNRLLDDNRELFIPETQEVVVPHPNFR-LFATQNP----P 1009 (4600)
T ss_pred hhHHHHHHhcC-----------cEEEeeccccCcHHHHHHHHHhhccccceecCCcceeeccCCCee-EEeecCC----C
Confidence 99999999985 8999994 3345569999999999999999965554 4555554 7877761 1
Q ss_pred cccccceeEEecCcccchHHHHHHHHHhhhccccCCcccchhhhHhhccCCCCCCcccchhHHHHHHHHHHhhhccCCcc
Q psy568 180 ATVSRCGMIWFSEDVLSTEMIFENYLSRLRNIALDDIDDDSSLLITVDATGKAPDDVLSPALTLQQDVASILSTHFAPDG 259 (1614)
Q Consensus 180 AtVSRcgmv~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (1614)
| +|= |-+-+-+.+.+|+-..++++++.+....+.+. .+-+.|..- ..+...+..+-
T Consensus 1010 ------g-~Yg-----GRK~LSrAFRNRFlE~hFddipedEle~ILh~------rc~iapSya--kKiVeVyr~Ls---- 1065 (4600)
T COG5271 1010 ------G-GYG-----GRKGLSRAFRNRFLEMHFDDIPEDELEEILHG------RCEIAPSYA--KKIVEVYRGLS---- 1065 (4600)
T ss_pred ------c-ccc-----chHHHHHHHHhhhHhhhcccCcHHHHHHHHhc------cCccCHHHH--HHHHHHHHHhh----
Confidence 1 222 22334445556665666666666655544433 223333211 11111110000
Q ss_pred hHHHHHHHhhhcccccccchHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCChHHHHhHHHHHHHHHHhhhcccCCCccch
Q psy568 260 LVVRALDYAMQQEHIMDFTRLRALGSLFSMLNQGVRNVLQYNHSHSDFPLSQDVVERYIPRILVYSLLWSFAGDGKLKMR 339 (1614)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~fa~~Ws~gg~l~~~~r 339 (1614)
+.+... ..+...+.+.++-.++.++.+....+. + +..-+++- +.+++|
T Consensus 1066 -~rRs~~--------rifeqknsfaTLRDLFrWa~R~avgy~-----------q-------la~~Gyml-----laER~R 1113 (4600)
T COG5271 1066 -SRRSIN--------RIFEQKNSFATLRDLFRWAGRIAVGYD-----------Q-------LAFLGYML-----LAERQR 1113 (4600)
T ss_pred -hhhhHH--------HHHHhhhhHHHHHHHHHHhccccchHH-----------H-------HHHhhHHH-----HHHHhc
Confidence 000000 001122334444444444433221111 0 00001100 122333
Q ss_pred HHH-----HHHHhhhccccCCCCCCCeeEEEEecCCCceeecCCCCccccccccccCCcceeeeCcchhhHHHHHHHHHh
Q psy568 340 SDF-----GNFLRSVTTITLPATSSDIVDFEVNIKNGEWVPWSNKVPQIEVETQKVAASDVVVPTLDTVRHESLLYTWLA 414 (1614)
Q Consensus 340 ~~f-----~~~l~~~~~~~~p~~~~~v~d~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~vpT~~t~r~~~ll~~~l~ 414 (1614)
..= .+-+.+..++. ..-||+|+.-. + ....--.-++=|.-+.|...+....+.
T Consensus 1114 ~~~dkv~V~~v~ekvmkvk------~d~d~~y~sme-------d---------~slkel~~v~wt~~m~rl~~lv~~Cl~ 1171 (4600)
T COG5271 1114 ELEDKVRVGQVFEKVMKVK------SDEDYKYDSME-------D---------ISLKELSKVVWTEPMCRLERLVGKCLV 1171 (4600)
T ss_pred CHHhhhhHHHHHHHHHhhh------hcchhhhhhHh-------h---------hhHHhhhhcccccchhhhhhHHHHhhc
Confidence 222 22222222322 13456664210 0 001112235556667788888999999
Q ss_pred cCCCEEEecCCCCchHHHHHHHHhcCC--------------C------CceEE---EEc--ccCC-CH--------HHHH
Q psy568 415 EHKPLVLCGPPGSGKTMTLLSALRALP--------------D------MEVVS---LNF--SSAT-TP--------ELLL 460 (1614)
Q Consensus 415 ~~~~vLL~Gp~GtGKT~lv~~~~~~l~--------------~------~~~~~---i~~--s~~t-~~--------~~l~ 460 (1614)
+..||||+|++|||||+...-++..+. + .++.. ++. ..+. .+ .++.
T Consensus 1172 ~kepvlLVgetgcgktt~cqvLa~~~~rel~~~nahq~Te~gdiigaqrPVrnrse~~y~l~k~l~~a~nV~~~~didL~ 1251 (4600)
T COG5271 1172 TKEPVLLVGETGCGKTTGCQVLADTFRRELNLMNAHQETENGDIIGAQRPVRNRSETGYGLTKALDIASNVFKTRDIDLI 1251 (4600)
T ss_pred ccCceEEEeecCcchhHHHHHHHHHHHHHHHHHHHhhhccccccccccccchhhhhhhhhHHHHHHHHHhhhhhhcchHH
Confidence 999999999999999997644332110 0 11100 000 0000 00 0010
Q ss_pred -------------------hH---hhcccceeecCCccccccccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcC
Q psy568 461 -------------------KT---FDHYCEYRKTPNGVILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQR 518 (1614)
Q Consensus 461 -------------------~~---~~~~~~~~~~~~g~~~~p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~ 518 (1614)
.. ...-++| .+|+++.+++.|..+++ |||++ +..+++|-|..+++..
T Consensus 1252 e~~~~~ssSdn~nls~~~e~~I~k~r~lfeW---~DGpLV~AMk~GdfFLl--DEIsL------AdDSVLERLNSVLE~~ 1320 (4600)
T COG5271 1252 EMHRGISSSDNDNLSFIGESFIFKNRKLFEW---KDGPLVKAMKCGDFFLL--DEISL------ADDSVLERLNSVLESQ 1320 (4600)
T ss_pred HHHhhhcccccccHHHHHHHHHHHhhhheee---ccchHHHHHhcCCeeEe--eeccc------cchHHHHHHHHhhccc
Confidence 11 1112333 46999999998987777 99999 7788999999999874
Q ss_pred -ceeeCCCC----ceEeecCeEEEEeecCCCCCCCCCCcccccccccEEEecCCCh-hHHHHHHHHHHHhhhhcchhhhh
Q psy568 519 -GFYRPADK----QWVSLERIQCVGACNPPTDPGRKPLSHRFLRHVPVIYVDYPGE-TSLKQIYGTFSRAMLRLIPPLRG 592 (1614)
Q Consensus 519 -~~~~~~~~----~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r~f~~i~i~~p~~-~~l~~I~~~~~~~~~~~~~~~~~ 592 (1614)
.+|-...+ ....+.+|+|+|||||+|+.|+++|+|++.+||+-|++|..++ +++..|+..-+.. ...+
T Consensus 1321 RtL~l~E~g~a~~~vtA~dgF~ffATMNPGGDyGKkELSPALRNRFTEiwvp~m~D~~d~~~iv~~~l~~------~~vd 1394 (4600)
T COG5271 1321 RTLYLTETGNAAEEVTAHDGFRFFATMNPGGDYGKKELSPALRNRFTEIWVPVMSDEADLIFIVLVDLRF------GEVD 1394 (4600)
T ss_pred ceEEEeecCCccceeeeccCceEEEeeCCCCccchhhCCHHHhcccceEeecccccccchhhhhhhhhhc------Cccc
Confidence 46654333 5667789999999999999999999999999999999998754 5566665443221 1112
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCCCCCccccChhhHHHHhhhhhcccCCCccCCHHHHHHHHHHhhhhhhcccCCCh----
Q psy568 593 YADALTNAMVELYLASQEKFTQDMQPHYVYSPREMTRWVRGICEAIRPLESLTVEGLVRLWAHEALRLFQDRLVND---- 668 (1614)
Q Consensus 593 ~~~~l~~~~~~~~~~~~~~~~~~~~~hY~F~lRdl~~v~~~i~~~~~~~~~~~~~~l~~lw~hE~~Rvf~DRL~~~---- 668 (1614)
++.. .++.+.-....+... -+.++||+.-|+.-+.+. ...+.. .+...-+.-||-|-|=..
T Consensus 1395 la~p----~ve~~kw~a~~l~~~----~vISiRd~l~~VEFIn~~----~i~d~~---~~l~~~~smvfidalG~fst~~ 1459 (4600)
T COG5271 1395 LAKP----SVETFKWLARSLLYN----DVISIRDLLLIVEFINRR----EILDLN---LVLFNAVSMVFIDALGEFSTVA 1459 (4600)
T ss_pred ccch----HHHHHHHHHHHhhcc----CceeHHHHHHHHHHHHHH----Hhhhhh---hHhhhhhhHHHHHHhcccchhH
Confidence 3333 333343333333111 126899999998876654 111221 122333444565544321
Q ss_pred ---------hHHHHHHHHHHHHHHhhcCCcchh----hcccCceeccCCcCCCc-ccChhHHHHHHHHHHHHHHhhhccc
Q psy568 669 ---------VERQWTNENIDAVAMKYFSNIDKE----VLARPILYSNWLSKNYV-PVGTTELREYVQARLKVFYEEELDV 734 (1614)
Q Consensus 669 ---------~d~~~~~~~l~~~~~~~f~~~~~~----~~~~~~~~~~~~~~~~~-~v~~~~l~~~~~~~l~~~~~~~~~~ 734 (1614)
..|+.+.-.+..+..........+ .+.+..+|..-+.-+|. ..... ..|
T Consensus 1460 laen~~dl~s~r~~c~v~l~~L~g~~i~~~~~~~n~i~f~d~~~f~g~f~iP~~~~~~S~----------Ssf------- 1522 (4600)
T COG5271 1460 LAENGLDLESERQRCFVWLEALEGAGIKGIEADVNAIYFEDERMFGGDFVIPYLVEHHSS----------SSF------- 1522 (4600)
T ss_pred HhhcccchhHHHHHHHHHHHHhccCCceeeecccceeEecccceeccccccccccccccC----------ccc-------
Confidence 122222222222211111111100 11222222211111111 10000 001
Q ss_pred chhhHHHHHHHHHHHHHHhccCCccEEEeecCCCChHHHHHHHHHHcCCeEEEEEecCCCChhcHHHHHH----------
Q psy568 735 QLVLFDEVLDHVLRIDRIFRQPQGHLLLIGVSGAGKTTLSRFVAFMNGLSVFQIRAHNKYTGADFDEDLR---------- 804 (1614)
Q Consensus 735 ~lvlf~~~i~hi~ri~Ril~~p~gh~LLvG~~GsGKtsl~rlaA~~~~~~~~~i~~~~~~~~~df~~~lk---------- 804 (1614)
++ -.+....++.|+.|++.--+ ++||-|.||+||||+...+|...|..+..|+++.+.++-|..+.=-
T Consensus 1523 ~l-~spTT~~Nl~rVlRAmqv~k-pilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w 1600 (4600)
T COG5271 1523 DL-ESPTTTVNLRRVLRAMQVGK-PILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRW 1600 (4600)
T ss_pred cc-cCCchHHhHHHHHHHHhcCC-ceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEe
Confidence 00 01234456677778776555 4999999999999999999999999999999998877554322100
Q ss_pred --HHHHHhccCCCcEEEEEcCCcccccchHHHHHHhhccCC---CCCCCChhhHHHHHHHhHHHHHHcCCCCCCHHHHHH
Q psy568 805 --TVLRRSGCKNEKIAFLLDESNVLESGFLERMNTLLANGE---IPGLFEGDEYTTLMTQCKEGAQREGLMLDSNEELYK 879 (1614)
Q Consensus 805 --~~l~~ag~~~~~~v~ll~d~~i~~~~~le~in~lL~~G~---v~~Lf~~eE~~~i~~~~~~~~~~~~~~~~s~~~l~~ 879 (1614)
.-+.+|- .++.|+++|+-+++..++||-+|+.|.... ||.| +-
T Consensus 1601 ~dapfL~am--r~G~WVlLDEiNLaSQSVlEGLNacLDhR~eayIPEl---------------------------d~--- 1648 (4600)
T COG5271 1601 MDAPFLHAM--RDGGWVLLDEINLASQSVLEGLNACLDHRREAYIPEL---------------------------DK--- 1648 (4600)
T ss_pred cccHHHHHh--hcCCEEEeehhhhhHHHHHHHHHHHHhhccccccccc---------------------------cc---
Confidence 0122221 234588999999999999999999995421 2221 00
Q ss_pred HHHHHHhhcceEEEEECCCChhhHHHhhhCccccccceecccCCCcHHHHHHHHHHhhccc
Q psy568 880 WFTQQVMKNLHVVFTMNPSSEGLKDRAATSPALFNRCVLNWFGDWSDTALYQVAKEFTSKI 940 (1614)
Q Consensus 880 ~f~~rv~~nlhivl~~sp~~~~~r~~~~~~PaL~~~~~i~wf~~W~~eaL~~va~~~l~~~ 940 (1614)
.=.|+-|++|+...+|-... -.|--.--+++|++++.+++-...+.+..+|.+....+
T Consensus 1649 --~f~~HpnfrVFAaqNPq~qg-gGRKgLPkSF~nRFsvV~~d~lt~dDi~~Ia~~~yp~v 1706 (4600)
T COG5271 1649 --TFDVHPNFRVFAAQNPQDQG-GGRKGLPKSFLNRFSVVKMDGLTTDDITHIANKMYPQV 1706 (4600)
T ss_pred --eeeccCCeeeeeecCchhcC-CCcccCCHHHhhhhheEEecccccchHHHHHHhhCCcc
Confidence 01367799999999986532 23334455789999999999999999999998765443
No 9
>KOG0733|consensus
Probab=99.80 E-value=2e-18 Score=201.26 Aligned_cols=146 Identities=21% Similarity=0.327 Sum_probs=102.2
Q ss_pred HHHhcCCCEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCC------CHHHHHhHhhcccceeecCCccccccccCC
Q psy568 411 TWLAEHKPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSAT------TPELLLKTFDHYCEYRKTPNGVILSPIQLG 484 (1614)
Q Consensus 411 ~~l~~~~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t------~~~~l~~~~~~~~~~~~~~~g~~~~p~~~g 484 (1614)
+-+...+.|||+||||||||++++.++..+ +.+++.++-.+-. +-..+...|++ +...
T Consensus 218 lGv~PprGvLlHGPPGCGKT~lA~AiAgel-~vPf~~isApeivSGvSGESEkkiRelF~~---------------A~~~ 281 (802)
T KOG0733|consen 218 LGVRPPRGVLLHGPPGCGKTSLANAIAGEL-GVPFLSISAPEIVSGVSGESEKKIRELFDQ---------------AKSN 281 (802)
T ss_pred cCCCCCCceeeeCCCCccHHHHHHHHhhhc-CCceEeecchhhhcccCcccHHHHHHHHHH---------------Hhcc
Confidence 344556899999999999999999888887 7888777654322 22333333332 2234
Q ss_pred ceEEEEeccCCCCCccccCccc-----HHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCCCcccccc--
Q psy568 485 KWLVLFCDEINLPDMDKYATQR-----VISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLR-- 557 (1614)
Q Consensus 485 k~~vlfiDdin~p~~d~~g~q~-----~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r-- 557 (1614)
.+||+|||||+-.++..-++|. +...|...||.-+.-.. .-..+.+|||+|.|. .|+++|.|
T Consensus 282 aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~------~g~~VlVIgATnRPD-----slDpaLRRaG 350 (802)
T KOG0733|consen 282 APCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKT------KGDPVLVIGATNRPD-----SLDPALRRAG 350 (802)
T ss_pred CCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhccccccc------CCCCeEEEecCCCCc-----ccCHHHhccc
Confidence 5699999999986665545544 33444455554221111 123589999999997 69998887
Q ss_pred ccc-EEEecCCChhHHHHHHHHHHHhh
Q psy568 558 HVP-VIYVDYPGETSLKQIYGTFSRAM 583 (1614)
Q Consensus 558 ~f~-~i~i~~p~~~~l~~I~~~~~~~~ 583 (1614)
||- -|.+..|+..+..+|++.+++.+
T Consensus 351 RFdrEI~l~vP~e~aR~~IL~~~~~~l 377 (802)
T KOG0733|consen 351 RFDREICLGVPSETAREEILRIICRGL 377 (802)
T ss_pred cccceeeecCCchHHHHHHHHHHHhhC
Confidence 676 89999999999999999988865
No 10
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.76 E-value=4e-17 Score=214.00 Aligned_cols=145 Identities=13% Similarity=0.164 Sum_probs=99.2
Q ss_pred cCCCEEEecCCCCchHHHHHHHHhcCC---------CCceEEEEcccCCCH----HHHHhHhhcccceeecCCccccccc
Q psy568 415 EHKPLVLCGPPGSGKTMTLLSALRALP---------DMEVVSLNFSSATTP----ELLLKTFDHYCEYRKTPNGVILSPI 481 (1614)
Q Consensus 415 ~~~~vLL~Gp~GtGKT~lv~~~~~~l~---------~~~~~~i~~s~~t~~----~~l~~~~~~~~~~~~~~~g~~~~p~ 481 (1614)
...+++|+||||||||++++.+++.+. +..++.++++..... ..+...+...+... .
T Consensus 207 ~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~~ge~e~~lk~ii~e~----------~ 276 (852)
T TIGR03345 207 RQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASVKGEFENRLKSVIDEV----------K 276 (852)
T ss_pred CcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhcccccchHHHHHHHHHHHHH----------H
Confidence 347899999999999999999987652 234556666543211 11222222222111 1
Q ss_pred cCCceEEEEeccCCCCCcc--ccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCCCcccccccc
Q psy568 482 QLGKWLVLFCDEINLPDMD--KYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLRHV 559 (1614)
Q Consensus 482 ~~gk~~vlfiDdin~p~~d--~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r~f 559 (1614)
..+..+|+||||+|.-... .-|.+.+-.+|...++.| .+++|||+++....-...++++|.|||
T Consensus 277 ~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G--------------~l~~IgaTT~~e~~~~~~~d~AL~rRf 342 (852)
T TIGR03345 277 ASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARG--------------ELRTIAATTWAEYKKYFEKDPALTRRF 342 (852)
T ss_pred hcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCC--------------CeEEEEecCHHHHhhhhhccHHHHHhC
Confidence 1245689999999985432 124566666788887754 478899999865334467899999999
Q ss_pred cEEEecCCChhHHHHHHHHHHHhh
Q psy568 560 PVIYVDYPGETSLKQIYGTFSRAM 583 (1614)
Q Consensus 560 ~~i~i~~p~~~~l~~I~~~~~~~~ 583 (1614)
.+|.+++|+.++...|+..+...+
T Consensus 343 ~~i~v~eps~~~~~~iL~~~~~~~ 366 (852)
T TIGR03345 343 QVVKVEEPDEETAIRMLRGLAPVL 366 (852)
T ss_pred eEEEeCCCCHHHHHHHHHHHHHhh
Confidence 999999999999999987665543
No 11
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.76 E-value=4e-17 Score=209.32 Aligned_cols=430 Identities=17% Similarity=0.224 Sum_probs=225.7
Q ss_pred cCCCEEEecCCCCchHHHHHHHHhcCC---------CCceEEEEcccCCCHHHHHhHhhcccceeecCCccccccccCCc
Q psy568 415 EHKPLVLCGPPGSGKTMTLLSALRALP---------DMEVVSLNFSSATTPELLLKTFDHYCEYRKTPNGVILSPIQLGK 485 (1614)
Q Consensus 415 ~~~~vLL~Gp~GtGKT~lv~~~~~~l~---------~~~~~~i~~s~~t~~~~l~~~~~~~~~~~~~~~g~~~~p~~~gk 485 (1614)
.+.++||+||||||||++++.+..... +..++.++.++........+.++..+. .. ..-.....
T Consensus 206 ~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~llaG~~~~Ge~e~rl~------~l-~~~l~~~~ 278 (758)
T PRK11034 206 RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFK------AL-LKQLEQDT 278 (758)
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHHHhcccchhhhHHHHHH------HH-HHHHHhcC
Confidence 467999999999999999999886531 112222222111110111111111111 11 11011123
Q ss_pred eEEEEeccCCCCCccc---cCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCCCcccccccccEE
Q psy568 486 WLVLFCDEINLPDMDK---YATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLRHVPVI 562 (1614)
Q Consensus 486 ~~vlfiDdin~p~~d~---~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r~f~~i 562 (1614)
..|+||||+|...... -|...+..+|+.++..| ++++|||++++........+++|.|||..|
T Consensus 279 ~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g--------------~i~vIgATt~~E~~~~~~~D~AL~rRFq~I 344 (758)
T PRK11034 279 NSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSG--------------KIRVIGSTTYQEFSNIFEKDRALARRFQKI 344 (758)
T ss_pred CCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCC--------------CeEEEecCChHHHHHHhhccHHHHhhCcEE
Confidence 4799999999642221 13455667788888653 478899999875333457899999999999
Q ss_pred EecCCChhHHHHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHHHhhcCCCCCCccccChhhHHHHhhhhhcccCCCc
Q psy568 563 YVDYPGETSLKQIYGTFSRAMLRLIPPLRGYADALTNAMVELYLASQEKFTQDMQPHYVYSPREMTRWVRGICEAIRPLE 642 (1614)
Q Consensus 563 ~i~~p~~~~l~~I~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~hY~F~lRdl~~v~~~i~~~~~~~~ 642 (1614)
.+++|+.++...|+..+...+..... ..+.+....+.+++. .++. .+.|-+-....++...+....-..
T Consensus 345 ~v~ePs~~~~~~IL~~~~~~ye~~h~--v~i~~~al~~a~~ls----~ryi-----~~r~lPdKaidlldea~a~~~~~~ 413 (758)
T PRK11034 345 DITEPSIEETVQIINGLKPKYEAHHD--VRYTAKAVRAAVELA----VKYI-----NDRHLPDKAIDVIDEAGARARLMP 413 (758)
T ss_pred EeCCCCHHHHHHHHHHHHHHhhhccC--CCcCHHHHHHHHHHh----hccc-----cCccChHHHHHHHHHHHHhhccCc
Confidence 99999999999998877665543211 122233333333332 1211 122233344444444332110000
Q ss_pred cCCHHHHHHHHHHhhhhhhcccCCChhHHHHHHHHHHHHHHhhcCCcchhhcccCceeccCCcCCCcccChhHHHHHHHH
Q psy568 643 SLTVEGLVRLWAHEALRLFQDRLVNDVERQWTNENIDAVAMKYFSNIDKEVLARPILYSNWLSKNYVPVGTTELREYVQA 722 (1614)
Q Consensus 643 ~~~~~~l~~lw~hE~~Rvf~DRL~~~~d~~~~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~ 722 (1614)
. . .+ ..-++.+ .+..++.+ |.+-....+...+. .
T Consensus 414 ~-~------------~~---~~~v~~~-------~i~~v~~~------------------~tgip~~~~~~~~~-----~ 447 (758)
T PRK11034 414 V-S------------KR---KKTVNVA-------DIESVVAR------------------IARIPEKSVSQSDR-----D 447 (758)
T ss_pred c-c------------cc---ccccChh-------hHHHHHHH------------------HhCCChhhhhhhHH-----H
Confidence 0 0 00 0001111 11111111 11100000111110 1
Q ss_pred HHHHHHhhhcccchhhHHHHHHHHHHHHHHh-------ccCCccEEEeecCCCChHHHHHHHHHHcCCeEEEEEecCCCC
Q psy568 723 RLKVFYEEELDVQLVLFDEVLDHVLRIDRIF-------RQPQGHLLLIGVSGAGKTTLSRFVAFMNGLSVFQIRAHNKYT 795 (1614)
Q Consensus 723 ~l~~~~~~~~~~~lvlf~~~i~hi~ri~Ril-------~~p~gh~LLvG~~GsGKtsl~rlaA~~~~~~~~~i~~~~~~~ 795 (1614)
.+.. .+......++-.+++++.+.+..+.. ..|.|++||+||+|+|||.+++.+|...+.+++.++++....
T Consensus 448 ~l~~-l~~~L~~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~ 526 (758)
T PRK11034 448 TLKN-LGDRLKMLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYME 526 (758)
T ss_pred HHHH-HHHHhcceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcc
Confidence 1111 11223334666688888888776654 367889999999999999999999999999998887654321
Q ss_pred ---hhcHHH--------HHHHHHHHhccCCCcEEEEEcCCcccccchHHHHHHhhccCCCCCCCChhhHHHHHHHhHHHH
Q psy568 796 ---GADFDE--------DLRTVLRRSGCKNEKIAFLLDESNVLESGFLERMNTLLANGEIPGLFEGDEYTTLMTQCKEGA 864 (1614)
Q Consensus 796 ---~~df~~--------~lk~~l~~ag~~~~~~v~ll~d~~i~~~~~le~in~lL~~G~v~~Lf~~eE~~~i~~~~~~~~ 864 (1614)
.+.+.+ +....+..+-......|+++|+-+-.++++...+..+|..|.+.+--.. .. .+++..
T Consensus 527 ~~~~~~LiG~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld~G~ltd~~g~-~v-----d~rn~i 600 (758)
T PRK11034 527 RHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMDNGTLTDNNGR-KA-----DFRNVV 600 (758)
T ss_pred cccHHHHcCCCCCcccccccchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHhcCeeecCCCc-ee-----cCCCcE
Confidence 111111 0011222222233457899999998999999999999998877542110 00 000000
Q ss_pred HHcCCCCCCHHHHHHHHHHHHhhcceEEEEECCC---ChhhHHHhhhCccccccce-ecccCCCcHHHHHHHHHHhhccc
Q psy568 865 QREGLMLDSNEELYKWFTQQVMKNLHVVFTMNPS---SEGLKDRAATSPALFNRCV-LNWFGDWSDTALYQVAKEFTSKI 940 (1614)
Q Consensus 865 ~~~~~~~~s~~~l~~~f~~rv~~nlhivl~~sp~---~~~~r~~~~~~PaL~~~~~-i~wf~~W~~eaL~~va~~~l~~~ 940 (1614)
- ...|+...-. -.+.++.+. .-++. -+.++. ..-|.++|++. |..|.+.+.+.+..++..++.++
T Consensus 601 i----I~TsN~g~~~----~~~~~~g~~-~~~~~~~~~~~~~~--~f~pefl~Rid~ii~f~~L~~~~l~~I~~~~l~~~ 669 (758)
T PRK11034 601 L----VMTTNAGVRE----TERKSIGLI-HQDNSTDAMEEIKK--IFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVEL 669 (758)
T ss_pred E----EEeCCcCHHH----HhhcccCcc-cchhhHHHHHHHHH--hcCHHHHccCCEEEEcCCCCHHHHHHHHHHHHHHH
Confidence 0 0000000000 001111100 00000 011221 23499999985 88999999999999999887653
No 12
>KOG1808|consensus
Probab=99.75 E-value=7.6e-17 Score=213.97 Aligned_cols=604 Identities=19% Similarity=0.241 Sum_probs=311.0
Q ss_pred HHHHHHHHHHHHHhc--cEEEEecCCCCChhhHHHHHHHHHHHhhcCCceEEEeCCCCCCcCcccc-cccCCCC--cccc
Q psy568 29 WMEKVLQLYQISNLN--HGLMMVGPSGSGKSTAWKVLLKALERYEGVEGVAHIIDPKAISKEALYG-VLDPNTR--EWTD 103 (1614)
Q Consensus 29 ~~~K~~qL~e~~~~r--~gVmlvG~~gsGKTt~~~~L~~al~~~~~~~~~~~~inPkais~~eLyG-~~d~~t~--eW~D 103 (1614)
+++|.+-..-....- --++|.||++||||++++-|+++..+- .+.+.|..-++..++.| |++.+++ .|.+
T Consensus 424 ~vq~~la~~~~a~~~~~~pillqG~tssGKtsii~~la~~~g~~-----~vrinnhehtd~qeyig~y~~~~~g~l~fre 498 (1856)
T KOG1808|consen 424 RVQKNLADLARAISSGKFPILLQGPTSSGKTSIIKELARATGKN-----IVRINNHEHTDLQEYIGTYVADDNGDLVFRE 498 (1856)
T ss_pred HHHHHHHHHHHHHhcCCCCeEEecCcCcCchhHHHHHHHHhccC-----ceehhccccchHHHHHHhhhcCCCCCeeeeh
Confidence 344444333333332 379999999999999999999997432 34567788899999999 5555555 6999
Q ss_pred chHHHHHHHHHhhhcCCCCCceEEEEcc--CCChhhhhhhhhhhcCCCccccCCCceeeCCCCceEEEEeccccc-----
Q psy568 104 GLFTHILRRIIDNVRGEISKRQWIIFDG--DVDPEWVENLNSVLDDNKLLTLPNGERLSLPPNIRIMFEVQDLKY----- 176 (1614)
Q Consensus 104 Gvls~i~r~~~~~~~~~~~~~~WivfDG--~vd~~WiE~lnsvLDdnk~L~L~nGeri~l~~~~~~iFEv~dL~~----- 176 (1614)
|++..++|+. .|+|||| -+...-+|.||-+||||+-|.+|.|.|.--+..+.++|=+.+-..
T Consensus 499 g~LV~Alr~G-----------~~~vlD~lnla~~dvL~aLnrllddnRel~ipe~~rlv~~h~~f~lfatqn~~~~y~gr 567 (1856)
T KOG1808|consen 499 GVLVQALRNG-----------DWIVLDELNLAPHDVLEALNRLLDDNRELFIPETQRLVKAHPEFMLFATQNPPGTYGGR 567 (1856)
T ss_pred hHHHHHHHhC-----------CEEEeccccccchHHHHHHHhhhhhhccccccccceeeccCcchhhhhhccCccccchh
Confidence 9999999996 7999999 456778999999999999999999999998888888997765431
Q ss_pred --cCccccccceeEEecCcccchHHHHHHHHHhhhccccCCcccchhhhHhhccCCCCCCcccchhHHHH-HHHHHHhhh
Q psy568 177 --ATLATVSRCGMIWFSEDVLSTEMIFENYLSRLRNIALDDIDDDSSLLITVDATGKAPDDVLSPALTLQ-QDVASILST 253 (1614)
Q Consensus 177 --ASPAtVSRcgmv~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 253 (1614)
-|-|.-+|.-.+++.. ...+....+. ...+.+.|..... ..+...+
T Consensus 568 k~lsRa~~~rf~e~~f~~-----------------------~~e~e~~~i~------~~~~~i~~~~~~k~~~~~~~L-- 616 (1856)
T KOG1808|consen 568 KILSRALRNRFIELHFDD-----------------------IGEEELEEIL------EHRCGIPPSYEKKMVQVMREL-- 616 (1856)
T ss_pred hhhhhcccccchhhhhhh-----------------------cCchhhhhhh------cccccCCchHHHHHHHHhhhh--
Confidence 1233333333222211 1111100000 0112223222100 0000000
Q ss_pred ccCCcchHHHHHHHhhhcccccccchHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCChHHHHhHHHHHHHHHHhhhcccC
Q psy568 254 HFAPDGLVVRALDYAMQQEHIMDFTRLRALGSLFSMLNQGVRNVLQYNHSHSDFPLSQDVVERYIPRILVYSLLWSFAGD 333 (1614)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~fa~~Ws~gg~ 333 (1614)
....-+.+...+.+ .+.++-..+....+ +.+. .....+.+ +...+-++
T Consensus 617 ------~~~rqls~i~e~~~--------~~gtlrd~f~w~~r----~~e~---~~~~~~~l--------~~~g~~~L--- 664 (1856)
T KOG1808|consen 617 ------SLRRQLSRIFEQKP--------SFGTLRDLFRWLLR----FTET---IAESNDQL--------AENGYMLL--- 664 (1856)
T ss_pred ------hhHHHHhhHHHhcc--------ccCCcHHHHHHHhh----cccc---ccchhhhh--------hhhhHHHh---
Confidence 00001111100000 00011111111111 0000 00000000 00000000
Q ss_pred CCccchHHHHHHHhhhccccCCCCCCCeeEEEEecCCCceeecCCCCccccccccccCCccee-eeCcchhhHHHHHHHH
Q psy568 334 GKLKMRSDFGNFLRSVTTITLPATSSDIVDFEVNIKNGEWVPWSNKVPQIEVETQKVAASDVV-VPTLDTVRHESLLYTW 412 (1614)
Q Consensus 334 l~~~~r~~f~~~l~~~~~~~~p~~~~~v~d~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~-vpT~~t~r~~~ll~~~ 412 (1614)
..+.|. ..--+. +..|.. .++.--.+. ...+ +-|+...|....-...
T Consensus 665 -~~r~r~--~~~~~~---v~~~~e--~~~~~~~~~------------------------~~l~~~~t~~m~r~~~~~~~~ 712 (1856)
T KOG1808|consen 665 -SSRQRY--EKEKRL---VQQPLE--KVMRKAVDK------------------------DQLSTVWTPGMTRLTIEKALV 712 (1856)
T ss_pred -hhhhhc--cchhhh---hhccch--hhhHHHHHH------------------------HHHHhhcchhhhhhhhhHHHH
Confidence 001010 000000 000100 000000000 0000 2233333444444556
Q ss_pred HhcCCCEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCC-----------HHHHHh----HhhcccceeecCCccc
Q psy568 413 LAEHKPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATT-----------PELLLK----TFDHYCEYRKTPNGVI 477 (1614)
Q Consensus 413 l~~~~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~-----------~~~l~~----~~~~~~~~~~~~~g~~ 477 (1614)
+....++ ++|++|||||+ +..+++.........++....+. -+...+ .+.+..+| ..|.+
T Consensus 713 ~~~~~~~-~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~ew---~dglL 787 (1856)
T KOG1808|consen 713 LAIKEQV-LVGLTGCGDTT-VCQILAEKSGVALRILNAHEHTEAQRPNVLFRENLQHDEIREDKMLKDLFEW---SDGLL 787 (1856)
T ss_pred HHhhcch-hcccccccchh-hhhhhhhcccceeeeehhhhhhhhccccccccccchhhHhhhhhhhhccccc---cCccc
Confidence 6678888 99999999997 55566555455566666655552 111111 12333444 45999
Q ss_pred cccccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCc-eeeCC-----CCceEeecCeEEEEeecCCCCCCCCCC
Q psy568 478 LSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRG-FYRPA-----DKQWVSLERIQCVGACNPPTDPGRKPL 551 (1614)
Q Consensus 478 ~~p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~-~~~~~-----~~~~~~~~~~~~iaa~n~~~~~g~~~l 551 (1614)
.++.+.|+..++ |+|.. +..++++-++.+++.-. ++..+ .......++++++|||||+++.|.+++
T Consensus 788 i~a~~~G~~~l~--Dei~l------a~dsvleRln~~Le~~rtL~~~e~~~a~~~~v~A~~~f~~~atmnpGgd~gkkEl 859 (1856)
T KOG1808|consen 788 IGAQGVGKQFLV--DEISL------AEDSVLERLNEVLEPDRTLLLLENQTAEEETVIAEEGFQLVATMNPGGDYGKKEL 859 (1856)
T ss_pred hhhhhccchhhh--hcccc------chhhHHHHHHHHhCcccccccccccccchhceeecccchhhhccCCccccceeec
Confidence 999888888777 99998 66678888888887633 44433 234566789999999999999999999
Q ss_pred cccccccccEEEecCCCh-hHHHHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHHHhhcCCCCCCccccChhhHHHH
Q psy568 552 SHRFLRHVPVIYVDYPGE-TSLKQIYGTFSRAMLRLIPPLRGYADALTNAMVELYLASQEKFTQDMQPHYVYSPREMTRW 630 (1614)
Q Consensus 552 ~~r~~r~f~~i~i~~p~~-~~l~~I~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~hY~F~lRdl~~v 630 (1614)
+++++.+|..+.++...+ .++..++... + ...-... ++.....-..+... .+.+.+++||..-|
T Consensus 860 s~AlrNrfte~~~~~~~d~~~l~~l~~g~----~--~~~~~~~----~~~~~~~~~~~~~~-----~~~~~~svrd~~~~ 924 (1856)
T KOG1808|consen 860 SPALRNRFTEVILQSLVDTGELLILVDGR----S--HEEDISN----AEPLEESQEWIKKL-----HTFFVPSVRDYETW 924 (1856)
T ss_pred ChhhhhceeEEEEeccCCccchhhhhccc----c--hhccccc----ccchhhhhhhhhhh-----ccccccchhhhhhh
Confidence 999999999887775543 3443222211 0 0000011 11111110111111 12344568888887
Q ss_pred hhhhhcccCCCccCCHHHHHHHHHHhhhhhhcccCCChhHHHH------HHHHHHHHHHhhcCCcch-------------
Q psy568 631 VRGICEAIRPLESLTVEGLVRLWAHEALRLFQDRLVNDVERQW------TNENIDAVAMKYFSNIDK------------- 691 (1614)
Q Consensus 631 ~~~i~~~~~~~~~~~~~~l~~lw~hE~~Rvf~DRL~~~~d~~~------~~~~l~~~~~~~f~~~~~------------- 691 (1614)
+.-+.+.... .......+..- ..-||.|++-..-+.-. ....+...+.. |+..-.
T Consensus 925 v~fl~~~~~~----~~~~~~al~~~-l~~vf~d~l~~~~~~~k~~~~~~~~~~l~~~~~~-~~~l~~~~~~~~~~~~~~~ 998 (1856)
T KOG1808|consen 925 VEFLNNMFQA----ILGDLFALHLG-LEMVFLDALQGELTMLKQFNENVPVKSLTELVAE-LGELRGRTKQLERQYPYST 998 (1856)
T ss_pred HHHHHHHHHH----HHHHHHHHHhh-hhhhcchhhcchhhHHHhhccccchHHHHHHHHH-Hhhhhcccchhhhccccch
Confidence 7665542110 01111111110 12366666554322110 00111111111 110000
Q ss_pred -hhcccCceeccCCcCCCcccChhHHHHHHHHHHHHHHhhhcccchhhH-HHHHHHHHHHHHHhccCCccEEEeecCCCC
Q psy568 692 -EVLARPILYSNWLSKNYVPVGTTELREYVQARLKVFYEEELDVQLVLF-DEVLDHVLRIDRIFRQPQGHLLLIGVSGAG 769 (1614)
Q Consensus 692 -~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~l~~~~~~~~~~~lvlf-~~~i~hi~ri~Ril~~p~gh~LLvG~~GsG 769 (1614)
..+......+.|.......+ . ...++.++ .++.+.+.|+.|.+..|.| +++-|.+|+|
T Consensus 999 ~~~v~~~~~~g~f~~~~~~~~----~---------------ss~~f~~~a~t~~~nl~~~l~~~~l~~p-~~leg~sg~g 1058 (1856)
T KOG1808|consen 999 EEAVNDVFHVGHFPIKTLPLV----A---------------SSFDFDSYAPTTSENLRRVLRALGLPKP-ILLEGESGSG 1058 (1856)
T ss_pred hhheeeeeeeccCCCCCCCcc----c---------------ccccccccChHHHHHHHHHHHhccCCcc-ccccCCCCCC
Confidence 00000000111110000000 0 00112222 4667788888999888987 9999999999
Q ss_pred hHHHHHHHHHHcCCeEEEEEecCCCChh
Q psy568 770 KTTLSRFVAFMNGLSVFQIRAHNKYTGA 797 (1614)
Q Consensus 770 Ktsl~rlaA~~~~~~~~~i~~~~~~~~~ 797 (1614)
||+++.-.+.+.|.....++++...+..
T Consensus 1059 ktsl~~~l~~~~G~~~~r~nl~~qtdl~ 1086 (1856)
T KOG1808|consen 1059 KTSLVLALGRLTGKWTIRLNLSDQTDLA 1086 (1856)
T ss_pred ccchhhhhhhhcccceeccccccccccc
Confidence 9999999999999999988776554433
No 13
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.75 E-value=8.1e-17 Score=210.75 Aligned_cols=423 Identities=18% Similarity=0.248 Sum_probs=224.3
Q ss_pred cCCCEEEecCCCCchHHHHHHHHhcC---------CCCceEEEEcccCCCHHHHHhHhhcccceeecCCccccccccCCc
Q psy568 415 EHKPLVLCGPPGSGKTMTLLSALRAL---------PDMEVVSLNFSSATTPELLLKTFDHYCEYRKTPNGVILSPIQLGK 485 (1614)
Q Consensus 415 ~~~~vLL~Gp~GtGKT~lv~~~~~~l---------~~~~~~~i~~s~~t~~~~l~~~~~~~~~~~~~~~g~~~~p~~~gk 485 (1614)
...+++|+||||||||++++.++..+ .+..++.+++++........+.++..+. ..+-.. ...+
T Consensus 202 ~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~~~~g~~e~~l~------~i~~~~-~~~~ 274 (731)
T TIGR02639 202 KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGTKYRGDFEERLK------AVVSEI-EKEP 274 (731)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhccccchHHHHHH------HHHHHH-hccC
Confidence 45789999999999999999998765 2345566665543322212222222111 111111 1123
Q ss_pred eEEEEeccCCCCCccc---cCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCCCcccccccccEE
Q psy568 486 WLVLFCDEINLPDMDK---YATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLRHVPVI 562 (1614)
Q Consensus 486 ~~vlfiDdin~p~~d~---~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r~f~~i 562 (1614)
..|+||||+|.-.... -|+..+..+|+..++.| .+++|||+|+....-....+++|.|||.+|
T Consensus 275 ~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g--------------~i~~IgaTt~~e~~~~~~~d~al~rRf~~i 340 (731)
T TIGR02639 275 NAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSG--------------KLRCIGSTTYEEYKNHFEKDRALSRRFQKI 340 (731)
T ss_pred CeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCC--------------CeEEEEecCHHHHHHHhhhhHHHHHhCceE
Confidence 5899999999643221 13344567888887643 478899999854323356799999999999
Q ss_pred EecCCChhHHHHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHHHhhcCCCCCCccccChhhHHHHhhhhhccc--CC
Q psy568 563 YVDYPGETSLKQIYGTFSRAMLRLIPPLRGYADALTNAMVELYLASQEKFTQDMQPHYVYSPREMTRWVRGICEAI--RP 640 (1614)
Q Consensus 563 ~i~~p~~~~l~~I~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~hY~F~lRdl~~v~~~i~~~~--~~ 640 (1614)
.+++|+.++...|++.....+..+.. ..+.+....+.+.+ ..++.+ ..|-++.-.+++...+... .+
T Consensus 341 ~v~~p~~~~~~~il~~~~~~~e~~~~--v~i~~~al~~~~~l----s~ryi~-----~r~~P~kai~lld~a~a~~~~~~ 409 (731)
T TIGR02639 341 DVGEPSIEETVKILKGLKEKYEEFHH--VKYSDEALEAAVEL----SARYIN-----DRFLPDKAIDVIDEAGASFRLRP 409 (731)
T ss_pred EeCCCCHHHHHHHHHHHHHHHHhccC--cccCHHHHHHHHHh----hhcccc-----cccCCHHHHHHHHHhhhhhhcCc
Confidence 99999999999999877665433221 12223333333332 222211 1223333333343322210 11
Q ss_pred CccCCHHHHHHHHHHhhhhhhcccCCChhHHHHHHHHHHHHHHhhcCCcchhhcccCceeccCCcCCCcccChhHHHHHH
Q psy568 641 LESLTVEGLVRLWAHEALRLFQDRLVNDVERQWTNENIDAVAMKYFSNIDKEVLARPILYSNWLSKNYVPVGTTELREYV 720 (1614)
Q Consensus 641 ~~~~~~~~l~~lw~hE~~Rvf~DRL~~~~d~~~~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~ 720 (1614)
... . ...++.+|- ..++...- +++. ..+..++... +
T Consensus 410 ~~~-~-----------------~~~v~~~~i-------~~~i~~~t-giP~-----------------~~~~~~~~~~-l 445 (731)
T TIGR02639 410 KAK-K-----------------KANVSVKDI-------ENVVAKMA-HIPV-----------------KTVSVDDREK-L 445 (731)
T ss_pred ccc-c-----------------ccccCHHHH-------HHHHHHHh-CCCh-----------------hhhhhHHHHH-H
Confidence 000 0 011222222 11111110 1100 0011111100 0
Q ss_pred HHHHHHHHhhhcccchhhHHHHHHHHHHHHHHhc-------cCCccEEEeecCCCChHHHHHHHHHHcCCeEEEEEecCC
Q psy568 721 QARLKVFYEEELDVQLVLFDEVLDHVLRIDRIFR-------QPQGHLLLIGVSGAGKTTLSRFVAFMNGLSVFQIRAHNK 793 (1614)
Q Consensus 721 ~~~l~~~~~~~~~~~lvlf~~~i~hi~ri~Ril~-------~p~gh~LLvG~~GsGKtsl~rlaA~~~~~~~~~i~~~~~ 793 (1614)
.. + .......++-.+++++.+.+..+..+ .|.|++||+||+|+|||.+++.+|...+.+++.++++..
T Consensus 446 ~~-l----~~~l~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~ 520 (731)
T TIGR02639 446 KN-L----EKNLKAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEY 520 (731)
T ss_pred HH-H----HHHHhcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchh
Confidence 00 0 11112234445667777766655432 478889999999999999999999999999888876532
Q ss_pred CC---hhcHHHH--------HHHHHHHhccCCCcEEEEEcCCcccccchHHHHHHhhccCCCCCCCChh-hHH---HHHH
Q psy568 794 YT---GADFDED--------LRTVLRRSGCKNEKIAFLLDESNVLESGFLERMNTLLANGEIPGLFEGD-EYT---TLMT 858 (1614)
Q Consensus 794 ~~---~~df~~~--------lk~~l~~ag~~~~~~v~ll~d~~i~~~~~le~in~lL~~G~v~~Lf~~e-E~~---~i~~ 858 (1614)
.+ .+.+.+. --..+..+-......++++|+-+-.++.+.+.+..+|..|.+.+-.... ++. -|+.
T Consensus 521 ~~~~~~~~lig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~T 600 (731)
T TIGR02639 521 MEKHTVSRLIGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDYATLTDNNGRKADFRNVILIMT 600 (731)
T ss_pred hhcccHHHHhcCCCCCcccchhhHHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhccCeeecCCCcccCCCCCEEEEC
Confidence 11 1111100 0011222222334568999999999999999999999999876422100 000 0000
Q ss_pred -Hh--HHHHH-HcCCCCCCHHHHHHHHHHHHhhcceEEEEECCCChhhHHHhhhCccccccce-ecccCCCcHHHHHHHH
Q psy568 859 -QC--KEGAQ-REGLMLDSNEELYKWFTQQVMKNLHVVFTMNPSSEGLKDRAATSPALFNRCV-LNWFGDWSDTALYQVA 933 (1614)
Q Consensus 859 -~~--~~~~~-~~~~~~~s~~~l~~~f~~rv~~nlhivl~~sp~~~~~r~~~~~~PaL~~~~~-i~wf~~W~~eaL~~va 933 (1614)
.. +...+ ..|. .... ..+.++ ..++. ..-|.++++.. |.-|.+.+.+.+..++
T Consensus 601 sn~g~~~~~~~~~~f---~~~~----~~~~~~-------------~~~~~--~f~pef~~Rid~Vi~F~pLs~e~l~~Iv 658 (731)
T TIGR02639 601 SNAGASEMSKPPIGF---GSEN----VESKSD-------------KAIKK--LFSPEFRNRLDAIIHFNPLSEEVLEKIV 658 (731)
T ss_pred CCcchhhhhhccCCc---chhh----hHHHHH-------------HHHHh--hcChHHHhcCCeEEEcCCCCHHHHHHHH
Confidence 00 00000 0000 0000 000000 11111 13578889985 7889999999999999
Q ss_pred HHhhccc
Q psy568 934 KEFTSKI 940 (1614)
Q Consensus 934 ~~~l~~~ 940 (1614)
...++++
T Consensus 659 ~~~L~~l 665 (731)
T TIGR02639 659 QKFVDEL 665 (731)
T ss_pred HHHHHHH
Confidence 9988753
No 14
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.75 E-value=5.6e-17 Score=185.25 Aligned_cols=257 Identities=15% Similarity=0.180 Sum_probs=182.7
Q ss_pred eeeeCcchhhHHHHHHHHHhcCCCEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCCHHHHHhHhhccc----cee
Q psy568 395 VVVPTLDTVRHESLLYTWLAEHKPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTPELLLKTFDHYC----EYR 470 (1614)
Q Consensus 395 ~~vpT~~t~r~~~ll~~~l~~~~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~~~~l~~~~~~~~----~~~ 470 (1614)
.|+..+++.+. +...+..++||||.||||||||++++.+++.+ +.+++.++|++.+++.++.|...-.. ...
T Consensus 46 ~y~f~~~~~~~---vl~~l~~~~~ilL~G~pGtGKTtla~~lA~~l-~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~ 121 (327)
T TIGR01650 46 AYLFDKATTKA---ICAGFAYDRRVMVQGYHGTGKSTHIEQIAARL-NWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQIT 121 (327)
T ss_pred CccCCHHHHHH---HHHHHhcCCcEEEEeCCCChHHHHHHHHHHHH-CCCeEEEEecCCCChhhcCCCceeeccCCccee
Confidence 46666666542 44456679999999999999999999999988 88999999999999999988632111 112
Q ss_pred ecCCccccccccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCc-eeeCCCCceE-eecCeEEEEeecCCC----
Q psy568 471 KTPNGVILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRG-FYRPADKQWV-SLERIQCVGACNPPT---- 544 (1614)
Q Consensus 471 ~~~~g~~~~p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~-~~~~~~~~~~-~~~~~~~iaa~n~~~---- 544 (1614)
.+..|++..+.+.| .++++||+|+ +.+.++..|..++|+++ ++..+.+... .+++|++|||+||.+
T Consensus 122 ~f~~GpL~~A~~~g--~illlDEin~------a~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~ 193 (327)
T TIGR01650 122 EFRDGILPWALQHN--VALCFDEYDA------GRPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDT 193 (327)
T ss_pred EEecCcchhHHhCC--eEEEechhhc------cCHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCC
Confidence 23458777766555 5566699999 66668899999999754 6665555444 778999999999965
Q ss_pred ---CCCCCCCcccccccccE-EEecCCChhHHHHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHHHhhcCCCCCCcc
Q psy568 545 ---DPGRKPLSHRFLRHVPV-IYVDYPGETSLKQIYGTFSRAMLRLIPPLRGYADALTNAMVELYLASQEKFTQDMQPHY 620 (1614)
Q Consensus 545 ---~~g~~~l~~r~~r~f~~-i~i~~p~~~~l~~I~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~hY 620 (1614)
+.|.+.++.+++.||.+ +.+++|+.++...|......... ......+++.++++...++..+.. .....
T Consensus 194 ~G~y~Gt~~l~~A~lDRF~i~~~~~Yp~~e~E~~Il~~~~~~~~------~~~~~~i~~~mV~la~~tR~~~~~-~~i~~ 266 (327)
T TIGR01650 194 TGLYHGTQQINQAQMDRWSIVTTLNYLEHDNEAAIVLAKAKGFD------DTEGKDIINAMVRVADMTRNAFIN-GDIST 266 (327)
T ss_pred CcceeeeecCCHHHHhheeeEeeCCCCCHHHHHHHHHhhccCCC------ccchHHHHHHHHHHHHHHHhhhcc-CCccc
Confidence 46889999999999985 68999999999999765432211 012456777788887777765532 23356
Q ss_pred ccChhhHHHHhhhhhcccCCCccCCHHHHHHHHHHhhhhhhcccCCChhHHHHHHHHHHHHHHhhcC
Q psy568 621 VYSPREMTRWVRGICEAIRPLESLTVEGLVRLWAHEALRLFQDRLVNDVERQWTNENIDAVAMKYFS 687 (1614)
Q Consensus 621 ~F~lRdl~~v~~~i~~~~~~~~~~~~~~l~~lw~hE~~Rvf~DRL~~~~d~~~~~~~l~~~~~~~f~ 687 (1614)
..|+|.+.+|.+.....-. + ..|--.+.|..| .++.+|... .+.+++.|+
T Consensus 267 ~~SpR~li~w~~~~~~f~~-----~-------~~~a~~~~~~n~-~~~~er~~~----~e~~q~~f~ 316 (327)
T TIGR01650 267 VMSPRTVITWAENAEIFDH-----D-------IALAFRLTFLNK-CDELERPTV----AEFFQRAFG 316 (327)
T ss_pred cccHHHHHHHHHHHHhhCc-----c-------HHHHHHHHHHhc-CCHHHHHHH----HHHHHHHcC
Confidence 7899999999987654310 1 122233456666 466667654 444555565
No 15
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=2.3e-16 Score=196.37 Aligned_cols=471 Identities=18% Similarity=0.235 Sum_probs=247.3
Q ss_pred HHHHHHHh-cCCCEEEecCCCCchHHHHHHHHhcC---------CCCceEEEEcccCCCHHHHHhHhhcccceeecCCcc
Q psy568 407 SLLYTWLA-EHKPLVLCGPPGSGKTMTLLSALRAL---------PDMEVVSLNFSSATTPELLLKTFDHYCEYRKTPNGV 476 (1614)
Q Consensus 407 ~ll~~~l~-~~~~vLL~Gp~GtGKT~lv~~~~~~l---------~~~~~~~i~~s~~t~~~~l~~~~~~~~~~~~~~~g~ 476 (1614)
.+++.+.. ...+.+|+|+||+|||++++.++... .+..++.++.++-.......|-|+..+. +.
T Consensus 181 r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvAGakyRGeFEeRlk------~v 254 (786)
T COG0542 181 RTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVAGAKYRGEFEERLK------AV 254 (786)
T ss_pred HHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHHhccccccCcHHHHHH------HH
Confidence 34555554 45678999999999999999999754 2345667777655555445555544332 22
Q ss_pred ccccccCCceEEEEeccCCCCCccc--cC-cccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCCCcc
Q psy568 477 ILSPIQLGKWLVLFCDEINLPDMDK--YA-TQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSH 553 (1614)
Q Consensus 477 ~~~p~~~gk~~vlfiDdin~p~~d~--~g-~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~ 553 (1614)
.........+|+||||+|..--.. -| +-.+-.+|...+..|. +++|||++...+....+-++
T Consensus 255 -l~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGe--------------L~~IGATT~~EYRk~iEKD~ 319 (786)
T COG0542 255 -LKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGE--------------LRCIGATTLDEYRKYIEKDA 319 (786)
T ss_pred -HHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCC--------------eEEEEeccHHHHHHHhhhch
Confidence 222222237999999999853331 12 3567888999988764 67899998876444567799
Q ss_pred cccccccEEEecCCChhHHHHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHHHhhcCCCCCCccccChhhHHHHhhh
Q psy568 554 RFLRHVPVIYVDYPGETSLKQIYGTFSRAMLRLIPPLRGYADALTNAMVELYLASQEKFTQDMQPHYVYSPREMTRWVRG 633 (1614)
Q Consensus 554 r~~r~f~~i~i~~p~~~~l~~I~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~hY~F~lRdl~~v~~~ 633 (1614)
+|.|||..|.+++|+.++-..|+..+-..+..+.. +.-.-.+++.+..-....+..++.|+.- .++=|-.--...
T Consensus 320 AL~RRFQ~V~V~EPs~e~ti~ILrGlk~~yE~hH~-V~i~D~Al~aAv~LS~RYI~dR~LPDKA----IDLiDeA~a~~~ 394 (786)
T COG0542 320 ALERRFQKVLVDEPSVEDTIAILRGLKERYEAHHG-VRITDEALVAAVTLSDRYIPDRFLPDKA----IDLLDEAGARVR 394 (786)
T ss_pred HHHhcCceeeCCCCCHHHHHHHHHHHHHHHHHccC-ceecHHHHHHHHHHHHhhcccCCCCchH----HHHHHHHHHHHH
Confidence 99999999999999999999998876665543221 1112233333332222334445544321 122222111111
Q ss_pred hhcccCCCccCCHHHHHHHHHHhhhhhhcccCCChhH---HHHHHHHHHHHHHhhcCCcchhhccc------CceeccCC
Q psy568 634 ICEAIRPLESLTVEGLVRLWAHEALRLFQDRLVNDVE---RQWTNENIDAVAMKYFSNIDKEVLAR------PILYSNWL 704 (1614)
Q Consensus 634 i~~~~~~~~~~~~~~l~~lw~hE~~Rvf~DRL~~~~d---~~~~~~~l~~~~~~~f~~~~~~~~~~------~~~~~~~~ 704 (1614)
+-.. .|......+. +++.-|.-+. .+..++| +..... +...-....+......... -.+...|.
T Consensus 395 l~~~-~p~~l~~~~~--~~~~l~~e~~---~~~~e~~~~~k~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~Ia~vv~~~T 467 (786)
T COG0542 395 LEID-KPEELDELER--ELAQLEIEKE---ALEREQDEKEKKLIDE-IIKLKEGRIPELEKELEAEVDEDDIAEVVARWT 467 (786)
T ss_pred hccc-CCcchhHHHH--HHHHHHHHHH---HHhhhhhHHHHHHHHH-HHHHhhhhhhhHHHHHhhccCHHHHHHHHHHHH
Confidence 1111 1211111110 0111011110 0111111 111111 1101000000000000000 00001111
Q ss_pred cCCCcccChhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHHhc-------cCCccEEEeecCCCChHHHHHHH
Q psy568 705 SKNYVPVGTTELREYVQARLKVFYEEELDVQLVLFDEVLDHVLRIDRIFR-------QPQGHLLLIGVSGAGKTTLSRFV 777 (1614)
Q Consensus 705 ~~~~~~v~~~~l~~~~~~~l~~~~~~~~~~~lvlf~~~i~hi~ri~Ril~-------~p~gh~LLvG~~GsGKtsl~rla 777 (1614)
+-+...+...+ ..++.. .++.....++-.++|+..+++..|--+ .|-|..|++||+|+|||.+++.+
T Consensus 468 gIPv~~l~~~e-----~~kll~-le~~L~~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaL 541 (786)
T COG0542 468 GIPVAKLLEDE-----KEKLLN-LERRLKKRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKAL 541 (786)
T ss_pred CCChhhhchhh-----HHHHHH-HHHHHhcceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHH
Confidence 11111111101 111111 123344467778999999998877644 78899999999999999999966
Q ss_pred H-HHcCCeEEEEEecCCCChhcHHHH--HHHH---------------HHHhccCCCc-EEEEEcCCcccccchHHHHHHh
Q psy568 778 A-FMNGLSVFQIRAHNKYTGADFDED--LRTV---------------LRRSGCKNEK-IAFLLDESNVLESGFLERMNTL 838 (1614)
Q Consensus 778 A-~~~~~~~~~i~~~~~~~~~df~~~--lk~~---------------l~~ag~~~~~-~v~ll~d~~i~~~~~le~in~l 838 (1614)
| ++.|-+-.-| .++|+||.+. +.++ |..+ +..+| .|+|+|+-+-++|.+++.+-.+
T Consensus 542 A~~Lfg~e~ali----R~DMSEy~EkHsVSrLIGaPPGYVGyeeGG~LTEa-VRr~PySViLlDEIEKAHpdV~nilLQV 616 (786)
T COG0542 542 AEALFGDEQALI----RIDMSEYMEKHSVSRLIGAPPGYVGYEEGGQLTEA-VRRKPYSVILLDEIEKAHPDVFNLLLQV 616 (786)
T ss_pred HHHhcCCCccce----eechHHHHHHHHHHHHhCCCCCCceeccccchhHh-hhcCCCeEEEechhhhcCHHHHHHHHHH
Confidence 6 5565443323 2367777663 1111 2222 23344 5899999999999999999999
Q ss_pred hccCCCCCCCChh-hH-HHHHHHhHHHHHHcCCCCCCHHHHHHHHHHHHhhcceEEEEECCCC----hhhHHHh--hhCc
Q psy568 839 LANGEIPGLFEGD-EY-TTLMTQCKEGAQREGLMLDSNEELYKWFTQQVMKNLHVVFTMNPSS----EGLKDRA--ATSP 910 (1614)
Q Consensus 839 L~~G~v~~Lf~~e-E~-~~i~~~~~~~~~~~~~~~~s~~~l~~~f~~rv~~nlhivl~~sp~~----~~~r~~~--~~~P 910 (1614)
|..|.+.+=-... ++ ..|+= | ....| + +.+.++.-. --.+.. +.++..+ ..-|
T Consensus 617 lDdGrLTD~~Gr~VdFrNtiII-m---TSN~G----s---------~~i~~~~~~--~~~~~~~~~~~~v~~~l~~~F~P 677 (786)
T COG0542 617 LDDGRLTDGQGRTVDFRNTIII-M---TSNAG----S---------EEILRDADG--DDFADKEALKEAVMEELKKHFRP 677 (786)
T ss_pred hcCCeeecCCCCEEecceeEEE-E---ecccc----h---------HHHHhhccc--cccchhhhHHHHHHHHHHhhCCH
Confidence 9999876543210 00 00000 0 00000 0 000000000 000101 1111111 2358
Q ss_pred cccccce-ecccCCCcHHHHHHHHHHhhccc
Q psy568 911 ALFNRCV-LNWFGDWSDTALYQVAKEFTSKI 940 (1614)
Q Consensus 911 aL~~~~~-i~wf~~W~~eaL~~va~~~l~~~ 940 (1614)
.+.|+.. |..|.+.+.+.+..|....+.++
T Consensus 678 EFLNRid~II~F~~L~~~~l~~Iv~~~L~~l 708 (786)
T COG0542 678 EFLNRIDEIIPFNPLSKEVLERIVDLQLNRL 708 (786)
T ss_pred HHHhhcccEEeccCCCHHHHHHHHHHHHHHH
Confidence 8999988 99999999999999999888764
No 16
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.73 E-value=9.1e-17 Score=184.58 Aligned_cols=217 Identities=18% Similarity=0.201 Sum_probs=167.2
Q ss_pred eeeCcchhhHHHHHHHHHhcCCCEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCCHHHHHhHhhccc--------
Q psy568 396 VVPTLDTVRHESLLYTWLAEHKPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTPELLLKTFDHYC-------- 467 (1614)
Q Consensus 396 ~vpT~~t~r~~~ll~~~l~~~~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~~~~l~~~~~~~~-------- 467 (1614)
||+|+.+.+....+..++..|.|++|.||||||||++++.+++.+ +.+++.++|++.++++++.+...+..
T Consensus 1 ~~~t~~~~~l~~~~l~~l~~g~~vLL~G~~GtGKT~lA~~la~~l-g~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~ 79 (262)
T TIGR02640 1 FIETDAVKRVTSRALRYLKSGYPVHLRGPAGTGKTTLAMHVARKR-DRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQF 79 (262)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHh-CCCEEEEeCCccCCHHHHhhhhcccchhhHHHHH
Confidence 578888888888888899999999999999999999999998866 88999999999999888876543210
Q ss_pred ----------ceeecCCccccccccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCC----CceEeecC
Q psy568 468 ----------EYRKTPNGVILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPAD----KQWVSLER 533 (1614)
Q Consensus 468 ----------~~~~~~~g~~~~p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~----~~~~~~~~ 533 (1614)
....+..|++..+...|. ++++||+|. .+..+...|..+++.+.+..++. .....+++
T Consensus 80 ~~~~~~~~~~~~~~~~~g~l~~A~~~g~--~lllDEi~r------~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~ 151 (262)
T TIGR02640 80 IHNVVKLEDIVRQNWVDNRLTLAVREGF--TLVYDEFTR------SKPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPE 151 (262)
T ss_pred HHHhhhhhcccceeecCchHHHHHHcCC--EEEEcchhh------CCHHHHHHHHHHhcCCeEEccCCCCCCceEecCCC
Confidence 011223577766555554 555699999 44457888899999877665432 22345689
Q ss_pred eEEEEeecCCCCCCCCCCcccccccccEEEecCCChhHHHHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHHHhhcC
Q psy568 534 IQCVGACNPPTDPGRKPLSHRFLRHVPVIYVDYPGETSLKQIYGTFSRAMLRLIPPLRGYADALTNAMVELYLASQEKFT 613 (1614)
Q Consensus 534 ~~~iaa~n~~~~~g~~~l~~r~~r~f~~i~i~~p~~~~l~~I~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 613 (1614)
+++|+|+||....|.++++++|++||..+.+++|+.++...|+...+ +..+.+++.+++++..+++.
T Consensus 152 frvIaTsN~~~~~g~~~l~~aL~~R~~~i~i~~P~~~~e~~Il~~~~-----------~~~~~~~~~iv~~~~~~R~~-- 218 (262)
T TIGR02640 152 FRVIFTSNPVEYAGVHETQDALLDRLITIFMDYPDIDTETAILRAKT-----------DVAEDSAATIVRLVREFRAS-- 218 (262)
T ss_pred CEEEEeeCCccccceecccHHHHhhcEEEECCCCCHHHHHHHHHHhh-----------CCCHHHHHHHHHHHHHHHhh--
Confidence 99999999987678889999999999999999999999999976532 23456777888888777721
Q ss_pred CCCCCccccChhhHHHHhhhhhcc
Q psy568 614 QDMQPHYVYSPREMTRWVRGICEA 637 (1614)
Q Consensus 614 ~~~~~hY~F~lRdl~~v~~~i~~~ 637 (1614)
..++.+++|....|++.+...
T Consensus 219 ---~~~~~~~~r~~i~~~~~~~~~ 239 (262)
T TIGR02640 219 ---GDEITSGLRASLMIAEVATQQ 239 (262)
T ss_pred ---CCccCCcHHHHHHHHHHHHHc
Confidence 235667899999988876543
No 17
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=99.72 E-value=7.7e-17 Score=178.71 Aligned_cols=215 Identities=24% Similarity=0.242 Sum_probs=144.2
Q ss_pred cceeeeCcchhhHHHHHHHHHhcCCCEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCCHHHHHhHhhcccceeec
Q psy568 393 SDVVVPTLDTVRHESLLYTWLAEHKPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTPELLLKTFDHYCEYRKT 472 (1614)
Q Consensus 393 ~~~~vpT~~t~r~~~ll~~~l~~~~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~~~~l~~~~~~~~~~~~~ 472 (1614)
...+|-||.|.|+...+..++..+....+.||+|||||.+++.+++.+ +..++.+||++.++...+.+.+.+.
T Consensus 9 ~~rlv~Tplt~r~~~~l~~al~~~~~~~~~GpagtGKtetik~La~~l-G~~~~vfnc~~~~~~~~l~ril~G~------ 81 (231)
T PF12774_consen 9 SPRLVITPLTDRCFLTLTQALSLNLGGALSGPAGTGKTETIKDLARAL-GRFVVVFNCSEQMDYQSLSRILKGL------ 81 (231)
T ss_dssp -------HHHHHHHHHHHHHHCTTTEEEEESSTTSSHHHHHHHHHHCT-T--EEEEETTSSS-HHHHHHHHHHH------
T ss_pred CCCceechHHHHHHHHHHHHhccCCCCCCcCCCCCCchhHHHHHHHHh-CCeEEEecccccccHHHHHHHHHHH------
Confidence 456899999999999999999999999999999999999999999988 8899999999999999998877532
Q ss_pred CCccccccccCCceEEEEeccCCCCCccccC--cccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCC
Q psy568 473 PNGVILSPIQLGKWLVLFCDEINLPDMDKYA--TQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKP 550 (1614)
Q Consensus 473 ~~g~~~~p~~~gk~~vlfiDdin~p~~d~~g--~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~ 550 (1614)
++.|.|+++ ||+|....+... ++.+..+...+.+...-+.-.+..+...++..++.||||.+ .|+.+
T Consensus 82 --------~~~GaW~cf--defnrl~~~vLS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y-~gr~~ 150 (231)
T PF12774_consen 82 --------AQSGAWLCF--DEFNRLSEEVLSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGY-AGRSE 150 (231)
T ss_dssp --------HHHT-EEEE--ETCCCSSHHHHHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-C-CCC--
T ss_pred --------hhcCchhhh--hhhhhhhHHHHHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeecccc-CCccc
Confidence 235889999 999996555322 22222222222222233333445566667899999999976 79999
Q ss_pred CcccccccccEEEecCCChhHHHHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHHHhhcCCCCCCccccChhhHHHH
Q psy568 551 LSHRFLRHVPVIYVDYPGETSLKQIYGTFSRAMLRLIPPLRGYADALTNAMVELYLASQEKFTQDMQPHYVYSPREMTRW 630 (1614)
Q Consensus 551 l~~r~~r~f~~i~i~~p~~~~l~~I~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~hY~F~lRdl~~v 630 (1614)
||+.+...|+++.+..||...+.+++ +.......+..+...++.+|..+.+.+ +.+.||.|+||.+..|
T Consensus 151 LP~nLk~lFRpvam~~PD~~~I~ei~---------L~s~GF~~a~~La~kl~~l~~l~~~~l--S~q~hydfgLRalk~v 219 (231)
T PF12774_consen 151 LPENLKALFRPVAMMVPDLSLIAEIL---------LLSQGFKDAKSLAKKLVSLFQLCKEQL--SKQDHYDFGLRALKSV 219 (231)
T ss_dssp S-HHHCTTEEEEE--S--HHHHHHHH---------HHCCCTSSHHHHHHHHHHHHHHHHHCS---SSTT---SHHHHHHH
T ss_pred CCHhHHHHhheeEEeCCCHHHHHHHH---------HHHcCchhHHHHHHHHHHHHHHHHHhh--ccCccccccHHHHHHH
Confidence 99999999999999999988887773 112222456788888899998888777 5567999999999998
Q ss_pred hhhhhc
Q psy568 631 VRGICE 636 (1614)
Q Consensus 631 ~~~i~~ 636 (1614)
+.....
T Consensus 220 l~~a~~ 225 (231)
T PF12774_consen 220 LRMAGS 225 (231)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 876543
No 18
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.69 E-value=8.8e-16 Score=202.30 Aligned_cols=156 Identities=17% Similarity=0.209 Sum_probs=101.7
Q ss_pred HHHHHHh-cCCCEEEecCCCCchHHHHHHHHhcCC---------CCceEEEEcccCCCHHHHHhHhhcccceeecCCccc
Q psy568 408 LLYTWLA-EHKPLVLCGPPGSGKTMTLLSALRALP---------DMEVVSLNFSSATTPELLLKTFDHYCEYRKTPNGVI 477 (1614)
Q Consensus 408 ll~~~l~-~~~~vLL~Gp~GtGKT~lv~~~~~~l~---------~~~~~~i~~s~~t~~~~l~~~~~~~~~~~~~~~g~~ 477 (1614)
++..+.. ...+++|+||||||||++++.++..+. +..++.+++++........+.++..+. ..+
T Consensus 190 ~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ag~~~~g~~e~~lk------~~~ 263 (857)
T PRK10865 190 TIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLK------GVL 263 (857)
T ss_pred HHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhhccchhhhhHHHHH------HHH
Confidence 3333333 345899999999999999999998662 456667777654332222222221111 111
Q ss_pred cccccCCceEEEEeccCCCCCcc--ccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCCCcccc
Q psy568 478 LSPIQLGKWLVLFCDEINLPDMD--KYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRF 555 (1614)
Q Consensus 478 ~~p~~~gk~~vlfiDdin~p~~d--~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~ 555 (1614)
-.....+...|+||||+|..... ..|+...-.+|...+..| .+++|||++++.......++++|
T Consensus 264 ~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g--------------~l~~IgaTt~~e~r~~~~~d~al 329 (857)
T PRK10865 264 NDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARG--------------ELHCVGATTLDEYRQYIEKDAAL 329 (857)
T ss_pred HHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhcC--------------CCeEEEcCCCHHHHHHhhhcHHH
Confidence 00001234689999999975322 124445566676666543 47899999987532235689999
Q ss_pred cccccEEEecCCChhHHHHHHHHHHHhh
Q psy568 556 LRHVPVIYVDYPGETSLKQIYGTFSRAM 583 (1614)
Q Consensus 556 ~r~f~~i~i~~p~~~~l~~I~~~~~~~~ 583 (1614)
.|||..|.++.|+.++...|++.+...+
T Consensus 330 ~rRf~~i~v~eP~~~~~~~iL~~l~~~~ 357 (857)
T PRK10865 330 ERRFQKVFVAEPSVEDTIAILRGLKERY 357 (857)
T ss_pred HhhCCEEEeCCCCHHHHHHHHHHHhhhh
Confidence 9999999999999999999988766543
No 19
>KOG1808|consensus
Probab=99.67 E-value=8.3e-16 Score=204.28 Aligned_cols=433 Identities=24% Similarity=0.319 Sum_probs=271.0
Q ss_pred ceeeeCcchhhHHHHHHHHHhcC-CCEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCCHHHHHhH-hhcccceee
Q psy568 394 DVVVPTLDTVRHESLLYTWLAEH-KPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTPELLLKT-FDHYCEYRK 471 (1614)
Q Consensus 394 ~~~vpT~~t~r~~~ll~~~l~~~-~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~~~~l~~~-~~~~~~~~~ 471 (1614)
..+|+|+...++...+..+...| .|+||.||+|||||++++.+++.. ++.++.++-...|+....+++ +......-.
T Consensus 417 ~~~i~T~~vq~~la~~~~a~~~~~~pillqG~tssGKtsii~~la~~~-g~~~vrinnhehtd~qeyig~y~~~~~g~l~ 495 (1856)
T KOG1808|consen 417 THYIITPRVQKNLADLARAISSGKFPILLQGPTSSGKTSIIKELARAT-GKNIVRINNHEHTDLQEYIGTYVADDNGDLV 495 (1856)
T ss_pred ceeeccHHHHHHHHHHHHHHhcCCCCeEEecCcCcCchhHHHHHHHHh-ccCceehhccccchHHHHHHhhhcCCCCCee
Confidence 45999999999999998888887 899999999999999999998887 889999999999999988884 444444444
Q ss_pred cCCccccccccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHc-CceeeCCCC-ceEeecCeEEEEeecCCC-CCCC
Q psy568 472 TPNGVILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQ-RGFYRPADK-QWVSLERIQCVGACNPPT-DPGR 548 (1614)
Q Consensus 472 ~~~g~~~~p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~-~~~~~~~~~-~~~~~~~~~~iaa~n~~~-~~g~ 548 (1614)
++.|+++.+...|.|+++ |+||+ +.-.+++.|.+++++ +++|.+.+. .+..++++.+++|.||++ ++|+
T Consensus 496 freg~LV~Alr~G~~~vl--D~lnl------a~~dvL~aLnrllddnRel~ipe~~rlv~~h~~f~lfatqn~~~~y~gr 567 (1856)
T KOG1808|consen 496 FREGVLVQALRNGDWIVL--DELNL------APHDVLEALNRLLDDNRELFIPETQRLVKAHPEFMLFATQNPPGTYGGR 567 (1856)
T ss_pred eehhHHHHHHHhCCEEEe--ccccc------cchHHHHHHHhhhhhhccccccccceeeccCcchhhhhhccCccccchh
Confidence 556999999999999888 99999 555599999999998 889987665 456788999999999996 5799
Q ss_pred CCCcccccccccEEEecCCChhHHHHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHHH--hhcCC-CCCCccccChh
Q psy568 549 KPLSHRFLRHVPVIYVDYPGETSLKQIYGTFSRAMLRLIPPLRGYADALTNAMVELYLASQ--EKFTQ-DMQPHYVYSPR 625 (1614)
Q Consensus 549 ~~l~~r~~r~f~~i~i~~p~~~~l~~I~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~-~~~~hY~F~lR 625 (1614)
+.++.+|..+|..+++....++++..|+.... ...+......++.|.... +++.- ....|-.-++|
T Consensus 568 k~lsRa~~~rf~e~~f~~~~e~e~~~i~~~~~-----------~i~~~~~~k~~~~~~~L~~~rqls~i~e~~~~~gtlr 636 (1856)
T KOG1808|consen 568 KILSRALRNRFIELHFDDIGEEELEEILEHRC-----------GIPPSYEKKMVQVMRELSLRRQLSRIFEQKPSFGTLR 636 (1856)
T ss_pred hhhhhcccccchhhhhhhcCchhhhhhhcccc-----------cCCchHHHHHHHHhhhhhhHHHHhhHHHhccccCCcH
Confidence 99999999999999999888999888854321 122334444455553322 11110 01112223788
Q ss_pred hHHHHhhhhhcccCCCccCCHHHHHHHHHHhhhhhhcccCCChhHHHHHHHHHHHHHHhhcCCcchhhcccCceeccCCc
Q psy568 626 EMTRWVRGICEAIRPLESLTVEGLVRLWAHEALRLFQDRLVNDVERQWTNENIDAVAMKYFSNIDKEVLARPILYSNWLS 705 (1614)
Q Consensus 626 dl~~v~~~i~~~~~~~~~~~~~~l~~lw~hE~~Rvf~DRL~~~~d~~~~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~~~ 705 (1614)
|+.+|.-+.-.. . ..+.+.+ +-+.+-..+.|....+++.....-+..++++
T Consensus 637 d~f~w~~r~~e~--~--~~~~~~l----~~~g~~~L~~r~r~~~~~~~v~~~~e~~~~~--------------------- 687 (1856)
T KOG1808|consen 637 DLFRWLLRFTET--I--AESNDQL----AENGYMLLSSRQRYEKEKRLVQQPLEKVMRK--------------------- 687 (1856)
T ss_pred HHHHHHhhcccc--c--cchhhhh----hhhhHHHhhhhhhccchhhhhhccchhhhHH---------------------
Confidence 998887763311 0 0011111 1111122233333333332211111111000
Q ss_pred CCCcccChhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHHhccCCccEEEeecCCCChHHHHHHHHHHcCCeE
Q psy568 706 KNYVPVGTTELREYVQARLKVFYEEELDVQLVLFDEVLDHVLRIDRIFRQPQGHLLLIGVSGAGKTTLSRFVAFMNGLSV 785 (1614)
Q Consensus 706 ~~~~~v~~~~l~~~~~~~l~~~~~~~~~~~lvlf~~~i~hi~ri~Ril~~p~gh~LLvG~~GsGKtsl~rlaA~~~~~~~ 785 (1614)
.+... ..+. +..+....-.+.-..++.. .-.. ++|.+|+||++++..+|+..+..+
T Consensus 688 -------------~~~~~--~l~~-------~~t~~m~r~~~~~~~~~~~-~~~~-~~~~~~~~~~~v~~~~~~~~~~~~ 743 (1856)
T KOG1808|consen 688 -------------AVDKD--QLST-------VWTPGMTRLTIEKALVLAI-KEQV-LVGLTGCGDTTVCQILAEKSGVAL 743 (1856)
T ss_pred -------------HHHHH--HHHh-------hcchhhhhhhhhHHHHHHh-hcch-hcccccccchhhhhhhhhccccee
Confidence 00000 0000 0000001111111111111 2235 999999999999999999998887
Q ss_pred EEEEecCCCC----hhcHHHHHHHHHHH----------------hccCCCcEEEEEcCCcccccchHHHHHHhhccCCCC
Q psy568 786 FQIRAHNKYT----GADFDEDLRTVLRR----------------SGCKNEKIAFLLDESNVLESGFLERMNTLLANGEIP 845 (1614)
Q Consensus 786 ~~i~~~~~~~----~~df~~~lk~~l~~----------------ag~~~~~~v~ll~d~~i~~~~~le~in~lL~~G~v~ 845 (1614)
..++.+..-. ...|.+.++....+ .+..+.+..|+.|+-...+++++|++|.+|-.-.
T Consensus 744 ~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~ew~dglLi~a~~~G~~~l~Dei~la~dsvleRln~~Le~~r-- 821 (1856)
T KOG1808|consen 744 RILNAHEHTEAQRPNVLFRENLQHDEIREDKMLKDLFEWSDGLLIGAQGVGKQFLVDEISLAEDSVLERLNEVLEPDR-- 821 (1856)
T ss_pred eeehhhhhhhhccccccccccchhhHhhhhhhhhccccccCccchhhhhccchhhhhccccchhhHHHHHHHHhCccc--
Confidence 7766554421 12333333322111 0122334567777777778889999999883221
Q ss_pred CCCChhhHHHHHHHhHHHHHHcCCCCCCHHHHHHHHHHHHhhcceEEEEECCCChhhHHHhhhCccccccceecccCCCc
Q psy568 846 GLFEGDEYTTLMTQCKEGAQREGLMLDSNEELYKWFTQQVMKNLHVVFTMNPSSEGLKDRAATSPALFNRCVLNWFGDWS 925 (1614)
Q Consensus 846 ~Lf~~eE~~~i~~~~~~~~~~~~~~~~s~~~l~~~f~~rv~~nlhivl~~sp~~~~~r~~~~~~PaL~~~~~i~wf~~W~ 925 (1614)
.|...|- +.+...+ -.....+.++-+|+|.|+-... ...||+.|+.|..|+.+-.
T Consensus 822 tL~~~e~---------~~a~~~~--------------v~A~~~f~~~atmnpGgd~gkk--Els~AlrNrfte~~~~~~~ 876 (1856)
T KOG1808|consen 822 TLLLLEN---------QTAEEET--------------VIAEEGFQLVATMNPGGDYGKK--ELSPALRNRFTEVILQSLV 876 (1856)
T ss_pred ccccccc---------cccchhc--------------eeecccchhhhccCCcccccee--ecChhhhhceeEEEEeccC
Confidence 1111110 1111111 1245578888999998875433 6799999999999998654
Q ss_pred H
Q psy568 926 D 926 (1614)
Q Consensus 926 ~ 926 (1614)
+
T Consensus 877 d 877 (1856)
T KOG1808|consen 877 D 877 (1856)
T ss_pred C
Confidence 4
No 20
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.67 E-value=3e-15 Score=198.18 Aligned_cols=463 Identities=17% Similarity=0.220 Sum_probs=228.3
Q ss_pred cCCCEEEecCCCCchHHHHHHHHhcCC---------CCceEEEEcccCCCHHHHHhHhhcccceeecCCccccccccCCc
Q psy568 415 EHKPLVLCGPPGSGKTMTLLSALRALP---------DMEVVSLNFSSATTPELLLKTFDHYCEYRKTPNGVILSPIQLGK 485 (1614)
Q Consensus 415 ~~~~vLL~Gp~GtGKT~lv~~~~~~l~---------~~~~~~i~~s~~t~~~~l~~~~~~~~~~~~~~~g~~~~p~~~gk 485 (1614)
...+++|+||||||||++++.++..+. +..++.++.++........+.++..+. . ++.-....+
T Consensus 199 ~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ag~~~~ge~e~rl~------~-i~~~~~~~~ 271 (821)
T CHL00095 199 TKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLAGTKYRGEFEERLK------R-IFDEIQENN 271 (821)
T ss_pred ccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhccCCCccHHHHHHH------H-HHHHHHhcC
Confidence 457899999999999999998887542 345666665433221111122221111 1 111111223
Q ss_pred eEEEEeccCCCCCcc--ccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCCCcccccccccEEE
Q psy568 486 WLVLFCDEINLPDMD--KYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLRHVPVIY 563 (1614)
Q Consensus 486 ~~vlfiDdin~p~~d--~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r~f~~i~ 563 (1614)
.+|+||||+|..... ..|...+..+|+..+..| .+++|||+++..+....+.++.|.+||.++.
T Consensus 272 ~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg--------------~l~~IgaTt~~ey~~~ie~D~aL~rRf~~I~ 337 (821)
T CHL00095 272 NIILVIDEVHTLIGAGAAEGAIDAANILKPALARG--------------ELQCIGATTLDEYRKHIEKDPALERRFQPVY 337 (821)
T ss_pred CeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCC--------------CcEEEEeCCHHHHHHHHhcCHHHHhcceEEe
Confidence 589999999964321 124455677888887754 4788999998753222457899999999999
Q ss_pred ecCCChhHHHHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHHHhhcCCCCCCccccChhhHHHHhhhhhcccCCCcc
Q psy568 564 VDYPGETSLKQIYGTFSRAMLRLIPPLRGYADALTNAMVELYLASQEKFTQDMQPHYVYSPREMTRWVRGICEAIRPLES 643 (1614)
Q Consensus 564 i~~p~~~~l~~I~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~hY~F~lRdl~~v~~~i~~~~~~~~~ 643 (1614)
++.|+.++...|+..+...+..+.. + .+.+..+.++..+. .++.+ +.|-+..-.+++...+....-...
T Consensus 338 v~ep~~~e~~aILr~l~~~~e~~~~-v-~i~deal~~i~~ls----~~yi~-----~r~lPdkaidlld~a~a~~~~~~~ 406 (821)
T CHL00095 338 VGEPSVEETIEILFGLRSRYEKHHN-L-SISDKALEAAAKLS----DQYIA-----DRFLPDKAIDLLDEAGSRVRLINS 406 (821)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHcC-C-CCCHHHHHHHHHHh----hccCc-----cccCchHHHHHHHHHHHHHHhhcc
Confidence 9999999999998876654433221 1 12233333333332 22211 122233223333322221100000
Q ss_pred CCHHHHH------HHHHHhhhhhhcc-cCC---ChhH-HHHHHHHHHHHHHhhcCC----------cchhhcccCceecc
Q psy568 644 LTVEGLV------RLWAHEALRLFQD-RLV---NDVE-RQWTNENIDAVAMKYFSN----------IDKEVLARPILYSN 702 (1614)
Q Consensus 644 ~~~~~l~------~lw~hE~~Rvf~D-RL~---~~~d-~~~~~~~l~~~~~~~f~~----------~~~~~~~~~~~~~~ 702 (1614)
..+..+. +-+..|-.....+ .+. ...+ .....+.+...... +.. ++..... .+++.
T Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~i~--~~~~~ 483 (821)
T CHL00095 407 RLPPAARELDKELREILKDKDEAIREQDFETAKQLRDREMEVRAQIAAIIQS-KKTEEEKRLEVPVVTEEDIA--EIVSA 483 (821)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHH-HHhhhcccccCCccCHHHHH--HHHHH
Confidence 0011110 1111111100000 000 0000 00011111111000 000 0000000 01111
Q ss_pred CCcCCCcccChhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHHh-------ccCCccEEEeecCCCChHHHHH
Q psy568 703 WLSKNYVPVGTTELREYVQARLKVFYEEELDVQLVLFDEVLDHVLRIDRIF-------RQPQGHLLLIGVSGAGKTTLSR 775 (1614)
Q Consensus 703 ~~~~~~~~v~~~~l~~~~~~~l~~~~~~~~~~~lvlf~~~i~hi~ri~Ril-------~~p~gh~LLvG~~GsGKtsl~r 775 (1614)
+.+-+...+..++. .++.. .++.....++-.++++..+++..+.. ..|.|++||.||+|+|||++++
T Consensus 484 ~tgip~~~~~~~~~-----~~l~~-l~~~L~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~ 557 (821)
T CHL00095 484 WTGIPVNKLTKSES-----EKLLH-MEETLHKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTK 557 (821)
T ss_pred HHCCCchhhchhHH-----HHHHH-HHHHhcCcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHH
Confidence 11111111111111 11111 12223445677788888887765532 2456779999999999999999
Q ss_pred HHHHHc---CCeEEEEEecCCCC---hhcHH------------HHHHHHHHHhccCCCcEEEEEcCCcccccchHHHHHH
Q psy568 776 FVAFMN---GLSVFQIRAHNKYT---GADFD------------EDLRTVLRRSGCKNEKIAFLLDESNVLESGFLERMNT 837 (1614)
Q Consensus 776 laA~~~---~~~~~~i~~~~~~~---~~df~------------~~lk~~l~~ag~~~~~~v~ll~d~~i~~~~~le~in~ 837 (1614)
.+|... +..++.+.++...+ .+.+. +.|...++ .+...|+++|+-+-.++.+...+-.
T Consensus 558 ~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~g~~~gyvg~~~~~~l~~~~~----~~p~~VvllDeieka~~~v~~~Llq 633 (821)
T CHL00095 558 ALASYFFGSEDAMIRLDMSEYMEKHTVSKLIGSPPGYVGYNEGGQLTEAVR----KKPYTVVLFDEIEKAHPDIFNLLLQ 633 (821)
T ss_pred HHHHHhcCCccceEEEEchhccccccHHHhcCCCCcccCcCccchHHHHHH----hCCCeEEEECChhhCCHHHHHHHHH
Confidence 888654 35677776653221 11100 11222222 2334688999999999999999999
Q ss_pred hhccCCCCCCCCh-------------hhHHHHHHHhHHHHHHcCCCCCC---HHHHHHHHHHHHhhcceEEEEECCCChh
Q psy568 838 LLANGEIPGLFEG-------------DEYTTLMTQCKEGAQREGLMLDS---NEELYKWFTQQVMKNLHVVFTMNPSSEG 901 (1614)
Q Consensus 838 lL~~G~v~~Lf~~-------------eE~~~i~~~~~~~~~~~~~~~~s---~~~l~~~f~~rv~~nlhivl~~sp~~~~ 901 (1614)
+|..|.+.+--.. .--..++. ......|..... ....|....+.++. .
T Consensus 634 ~le~g~~~d~~g~~v~~~~~i~I~Tsn~g~~~i~---~~~~~~gf~~~~~~~~~~~~~~~~~~~~~-------------~ 697 (821)
T CHL00095 634 ILDDGRLTDSKGRTIDFKNTLIIMTSNLGSKVIE---TNSGGLGFELSENQLSEKQYKRLSNLVNE-------------E 697 (821)
T ss_pred HhccCceecCCCcEEecCceEEEEeCCcchHHHH---hhccccCCcccccccccccHHHHHHHHHH-------------H
Confidence 9999977542110 00001111 000011111000 01112222222221 1
Q ss_pred hHHHhhhCccccccc-eecccCCCcHHHHHHHHHHhhccc
Q psy568 902 LKDRAATSPALFNRC-VLNWFGDWSDTALYQVAKEFTSKI 940 (1614)
Q Consensus 902 ~r~~~~~~PaL~~~~-~i~wf~~W~~eaL~~va~~~l~~~ 940 (1614)
++.. .-|.++||+ .|.-|.+.+.+.+..++...++++
T Consensus 698 ~~~~--f~peflnRid~ii~F~pL~~~~l~~Iv~~~l~~l 735 (821)
T CHL00095 698 LKQF--FRPEFLNRLDEIIVFRQLTKNDVWEIAEIMLKNL 735 (821)
T ss_pred HHHh--cCHHHhccCCeEEEeCCCCHHHHHHHHHHHHHHH
Confidence 2222 358899998 789999999999999999887754
No 21
>KOG0730|consensus
Probab=99.59 E-value=4.4e-14 Score=168.82 Aligned_cols=381 Identities=20% Similarity=0.290 Sum_probs=218.5
Q ss_pred hcCCCEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCC------CHHHHHhHhhcccceeecCCccccccccCCc-e
Q psy568 414 AEHKPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSAT------TPELLLKTFDHYCEYRKTPNGVILSPIQLGK-W 486 (1614)
Q Consensus 414 ~~~~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t------~~~~l~~~~~~~~~~~~~~~g~~~~p~~~gk-~ 486 (1614)
...+.+|++||||||||.+++.+++.. +-.++.+|.++-. +-+.+...|+. +...+ +
T Consensus 216 ~~prg~Ll~gppg~Gkt~l~~aVa~e~-~a~~~~i~~peli~k~~gEte~~LR~~f~~---------------a~k~~~p 279 (693)
T KOG0730|consen 216 KPPRGLLLYGPPGTGKTFLVRAVANEY-GAFLFLINGPELISKFPGETESNLRKAFAE---------------ALKFQVP 279 (693)
T ss_pred CCCCCccccCCCCCChHHHHHHHHHHh-CceeEecccHHHHHhcccchHHHHHHHHHH---------------HhccCCC
Confidence 446789999999999999999888766 4455556554211 11222222221 11233 6
Q ss_pred EEEEeccCCCCCccccCccc----HHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCCCcccccc-ccc-
Q psy568 487 LVLFCDEINLPDMDKYATQR----VISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLR-HVP- 560 (1614)
Q Consensus 487 ~vlfiDdin~p~~d~~g~q~----~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r-~f~- 560 (1614)
.++|||||+...+..-++.. +..-|+.|+|.-+ ...++.+++|+|.|. .|++.+.| ||-
T Consensus 280 sii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~----------~~~~vivl~atnrp~-----sld~alRRgRfd~ 344 (693)
T KOG0730|consen 280 SIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLK----------PDAKVIVLAATNRPD-----SLDPALRRGRFDR 344 (693)
T ss_pred eeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCc----------CcCcEEEEEecCCcc-----ccChhhhcCCCcc
Confidence 89999999975543334433 5556667776533 223677899998885 68999886 776
Q ss_pred EEEecCCChhHHHHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHHHhhcCCCCCCccccChhhHHHHhhhhhcccCC
Q psy568 561 VIYVDYPGETSLKQIYGTFSRAMLRLIPPLRGYADALTNAMVELYLASQEKFTQDMQPHYVYSPREMTRWVRGICEAIRP 640 (1614)
Q Consensus 561 ~i~i~~p~~~~l~~I~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~hY~F~lRdl~~v~~~i~~~~~~ 640 (1614)
.+.+..|+......|.+.+...+-.. +. .....+...+ | -|.-.||...+.......
T Consensus 345 ev~IgiP~~~~RldIl~~l~k~~~~~-~~--~~l~~iA~~t-----------------h-GyvGaDL~~l~~ea~~~~-- 401 (693)
T KOG0730|consen 345 EVEIGIPGSDGRLDILRVLTKKMNLL-SD--VDLEDIAVST-----------------H-GYVGADLAALCREASLQA-- 401 (693)
T ss_pred eeeecCCCchhHHHHHHHHHHhcCCc-ch--hhHHHHHHHc-----------------c-chhHHHHHHHHHHHHHHH--
Confidence 78999999999999988776654221 10 0000111100 1 123456666655433210
Q ss_pred CccCCHHHHHHHHHHhhhhhhcccCCChhHHHHHHHHHHHHHHhhcCCcchhhcccCceeccCCcCCCcccC-hhHHHHH
Q psy568 641 LESLTVEGLVRLWAHEALRLFQDRLVNDVERQWTNENIDAVAMKYFSNIDKEVLARPILYSNWLSKNYVPVG-TTELREY 719 (1614)
Q Consensus 641 ~~~~~~~~l~~lw~hE~~Rvf~DRL~~~~d~~~~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~l~~~ 719 (1614)
+ | + +. +.+....+...+..... .. ....+-.|..++ .++++..
T Consensus 402 --------~---------r---~------~~----~~~~~A~~~i~psa~Re----~~--ve~p~v~W~dIGGlE~lK~e 445 (693)
T KOG0730|consen 402 --------T---------R---R------TL----EIFQEALMGIRPSALRE----IL--VEMPNVSWDDIGGLEELKRE 445 (693)
T ss_pred --------h---------h---h------hH----HHHHHHHhcCCchhhhh----ee--ccCCCCChhhccCHHHHHHH
Confidence 0 0 0 00 11111222222211111 00 111122233333 4666666
Q ss_pred HHHHHHHHHhhhcccchhhHHHHHHHHHHHHHH-hccCCccEEEeecCCCChHHHHHHHHHHcCCeEEEEE----ecCCC
Q psy568 720 VQARLKVFYEEELDVQLVLFDEVLDHVLRIDRI-FRQPQGHLLLIGVSGAGKTTLSRFVAFMNGLSVFQIR----AHNKY 794 (1614)
Q Consensus 720 ~~~~l~~~~~~~~~~~lvlf~~~i~hi~ri~Ri-l~~p~gh~LLvG~~GsGKtsl~rlaA~~~~~~~~~i~----~~~~~ 794 (1614)
+++.+ .+.++|.....|. ++.|+| +||.||||||||+++|.+|..++++|.++. +++-+
T Consensus 446 lq~~V---------------~~p~~~pe~F~r~Gi~ppkG-VLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~v 509 (693)
T KOG0730|consen 446 LQQAV---------------EWPLKHPEKFARFGISPPKG-VLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYV 509 (693)
T ss_pred HHHHH---------------hhhhhchHHHHHhcCCCCce-EEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhc
Confidence 65544 2567788888888 577788 999999999999999999999999999995 44444
Q ss_pred ChhcHHHHHHHHHHHhccCCCcEEEEEcCCcccccchHHHHHHhhcc--CCCCCCCChhhHHHHHHHhHHHHHHcCCCCC
Q psy568 795 TGADFDEDLRTVLRRSGCKNEKIAFLLDESNVLESGFLERMNTLLAN--GEIPGLFEGDEYTTLMTQCKEGAQREGLMLD 872 (1614)
Q Consensus 795 ~~~df~~~lk~~l~~ag~~~~~~v~ll~d~~i~~~~~le~in~lL~~--G~v~~Lf~~eE~~~i~~~~~~~~~~~~~~~~ 872 (1614)
+-+| ..++.++++|- ...|+++++|+ |.++-.. |+-. +=-+.+++++-... .|..
T Consensus 510 GeSE--r~ir~iF~kAR-~~aP~IiFfDE-----------iDsi~~~R~g~~~-----~v~~RVlsqLLtEm--DG~e-- 566 (693)
T KOG0730|consen 510 GESE--RAIREVFRKAR-QVAPCIIFFDE-----------IDALAGSRGGSSS-----GVTDRVLSQLLTEM--DGLE-- 566 (693)
T ss_pred CchH--HHHHHHHHHHh-hcCCeEEehhh-----------HHhHhhccCCCcc-----chHHHHHHHHHHHc--cccc--
Confidence 5443 67888898884 44566666665 3333321 2222 11233344333322 2221
Q ss_pred CHHHHHHHHHHHHhhcceEEEEECCCChhhHHHhhhCccccc--c-ceecccCCCcHHHHHHHHHHhhcccCC
Q psy568 873 SNEELYKWFTQQVMKNLHVVFTMNPSSEGLKDRAATSPALFN--R-CVLNWFGDWSDTALYQVAKEFTSKIDL 942 (1614)
Q Consensus 873 s~~~l~~~f~~rv~~nlhivl~~sp~~~~~r~~~~~~PaL~~--~-~~i~wf~~W~~eaL~~va~~~l~~~~~ 942 (1614)
..+|+-|+-..+-- + +--|||+. + =.+.|+..=+.++-.++-..++..+..
T Consensus 567 ------------~~k~V~ViAATNRp-d------~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~ 620 (693)
T KOG0730|consen 567 ------------ALKNVLVIAATNRP-D------MIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPF 620 (693)
T ss_pred ------------ccCcEEEEeccCCh-h------hcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCC
Confidence 12455555544421 1 23566665 3 346667666667888888888877654
No 22
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.58 E-value=8.4e-14 Score=184.93 Aligned_cols=149 Identities=16% Similarity=0.226 Sum_probs=96.7
Q ss_pred cCCCEEEecCCCCchHHHHHHHHhcCC---------CCceEEEEcccCCCHHHHHhHhhcccceeecCCccccccccCCc
Q psy568 415 EHKPLVLCGPPGSGKTMTLLSALRALP---------DMEVVSLNFSSATTPELLLKTFDHYCEYRKTPNGVILSPIQLGK 485 (1614)
Q Consensus 415 ~~~~vLL~Gp~GtGKT~lv~~~~~~l~---------~~~~~~i~~s~~t~~~~l~~~~~~~~~~~~~~~g~~~~p~~~gk 485 (1614)
.+.+++|+||||||||++++.++..+. +..++.+++++........+.++..+. ..+-.....++
T Consensus 193 ~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a~~~~~g~~e~~l~------~~l~~~~~~~~ 266 (852)
T TIGR03346 193 TKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIAGAKYRGEFEERLK------AVLNEVTKSEG 266 (852)
T ss_pred CCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhhcchhhhhHHHHHH------HHHHHHHhcCC
Confidence 457899999999999999999887652 445666665543221111122211110 11100001234
Q ss_pred eEEEEeccCCCCCcc--ccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCCCcccccccccEEE
Q psy568 486 WLVLFCDEINLPDMD--KYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLRHVPVIY 563 (1614)
Q Consensus 486 ~~vlfiDdin~p~~d--~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r~f~~i~ 563 (1614)
..|+||||+|..... .-|+.....+|+..+..| .+++|||++++.......++++|.|||.+|.
T Consensus 267 ~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g--------------~i~~IgaTt~~e~r~~~~~d~al~rRf~~i~ 332 (852)
T TIGR03346 267 QIILFIDELHTLVGAGKAEGAMDAGNMLKPALARG--------------ELHCIGATTLDEYRKYIEKDAALERRFQPVF 332 (852)
T ss_pred CeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcC--------------ceEEEEeCcHHHHHHHhhcCHHHHhcCCEEE
Confidence 689999999964321 113445566776665432 5789999998753222568999999999999
Q ss_pred ecCCChhHHHHHHHHHHHhh
Q psy568 564 VDYPGETSLKQIYGTFSRAM 583 (1614)
Q Consensus 564 i~~p~~~~l~~I~~~~~~~~ 583 (1614)
++.|+.++...|+..+...+
T Consensus 333 v~~p~~~~~~~iL~~~~~~~ 352 (852)
T TIGR03346 333 VDEPTVEDTISILRGLKERY 352 (852)
T ss_pred eCCCCHHHHHHHHHHHHHHh
Confidence 99999999999988775554
No 23
>PHA02244 ATPase-like protein
Probab=99.57 E-value=4.1e-14 Score=162.82 Aligned_cols=195 Identities=18% Similarity=0.205 Sum_probs=135.3
Q ss_pred hHHHHHHHHHhcCCCEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCCHHHHHhHhhcccceeecCCccccccccC
Q psy568 404 RHESLLYTWLAEHKPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTPELLLKTFDHYCEYRKTPNGVILSPIQL 483 (1614)
Q Consensus 404 r~~~ll~~~l~~~~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~~~~l~~~~~~~~~~~~~~~g~~~~p~~~ 483 (1614)
.....+..++..+.||||.||||||||++++.+++.+ +.+++.++. .++...+.+.+.... .+..|+++.+...
T Consensus 107 ~~~~ri~r~l~~~~PVLL~GppGtGKTtLA~aLA~~l-g~pfv~In~--l~d~~~L~G~i~~~g---~~~dgpLl~A~~~ 180 (383)
T PHA02244 107 YETADIAKIVNANIPVFLKGGAGSGKNHIAEQIAEAL-DLDFYFMNA--IMDEFELKGFIDANG---KFHETPFYEAFKK 180 (383)
T ss_pred HHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHh-CCCEEEEec--ChHHHhhcccccccc---cccchHHHHHhhc
Confidence 3444567788999999999999999999999998876 777887763 233333433322211 2234677766666
Q ss_pred CceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCC------CCCCCCcccccc
Q psy568 484 GKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTD------PGRKPLSHRFLR 557 (1614)
Q Consensus 484 gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~------~g~~~l~~r~~r 557 (1614)
|. +++|||++. .++.++..|..+++++ ++...+.....++++++|+|+|+++. .|++.++++++.
T Consensus 181 Gg--vLiLDEId~------a~p~vq~~L~~lLd~r-~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD 251 (383)
T PHA02244 181 GG--LFFIDEIDA------SIPEALIIINSAIANK-FFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLD 251 (383)
T ss_pred CC--EEEEeCcCc------CCHHHHHHHHHHhccC-eEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHh
Confidence 64 555599999 5666888999999876 55555666777899999999999752 278999999999
Q ss_pred cccEEEecCCChhHHHHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHHHhhcCCCCCCccccChhhHHHHhhhh
Q psy568 558 HVPVIYVDYPGETSLKQIYGTFSRAMLRLIPPLRGYADALTNAMVELYLASQEKFTQDMQPHYVYSPREMTRWVRGI 634 (1614)
Q Consensus 558 ~f~~i~i~~p~~~~l~~I~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~hY~F~lRdl~~v~~~i 634 (1614)
||.++.+++|+..+. .|.. . ...++.+...++..+.. ...-+.||+|++.+|.+..
T Consensus 252 RFv~I~~dyp~~~E~-~i~~---------------~----~~~lv~~a~~lR~~~~~-~~l~~~~StR~li~~a~~~ 307 (383)
T PHA02244 252 RFAPIEFDYDEKIEH-LISN---------------G----DEDLVNFVALLRHEMAE-KGLDHVFSMRAIIHGKKFD 307 (383)
T ss_pred hcEEeeCCCCcHHHH-HHhh---------------h----HHHHHHHHHHHHHHHhc-CCCCccccHHHHHHHHHhh
Confidence 999999999984333 2211 0 12233333334333321 2234889999999998864
No 24
>KOG0736|consensus
Probab=99.51 E-value=2.2e-13 Score=163.91 Aligned_cols=328 Identities=20% Similarity=0.256 Sum_probs=188.2
Q ss_pred CCCEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCC------HHHHHhHhhcccceeecCCccccccccCCceEEE
Q psy568 416 HKPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATT------PELLLKTFDHYCEYRKTPNGVILSPIQLGKWLVL 489 (1614)
Q Consensus 416 ~~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~------~~~l~~~~~~~~~~~~~~~g~~~~p~~~gk~~vl 489 (1614)
+-.|||.|+||||||++++.+++.+ +.+++.++|.+.+. ...++..+. + .+ .-..+|+
T Consensus 431 ~~~vLLhG~~g~GK~t~V~~vas~l-g~h~~evdc~el~~~s~~~~etkl~~~f~----~-----a~------~~~pavi 494 (953)
T KOG0736|consen 431 NPSVLLHGPPGSGKTTVVRAVASEL-GLHLLEVDCYELVAESASHTETKLQAIFS----R-----AR------RCSPAVL 494 (953)
T ss_pred ceEEEEeCCCCCChHHHHHHHHHHh-CCceEeccHHHHhhcccchhHHHHHHHHH----H-----Hh------hcCceEE
Confidence 3468999999999999998888887 88888888865432 222333222 1 11 2235899
Q ss_pred EeccCCCCCccccCc--ccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCCCccccccccc-EEEecC
Q psy568 490 FCDEINLPDMDKYAT--QRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLRHVP-VIYVDY 566 (1614)
Q Consensus 490 fiDdin~p~~d~~g~--q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r~f~-~i~i~~ 566 (1614)
|+-++|.-..|..|. -+++..+|.++.. +.....-+.+.+||+++... .+|+.+.++|. .|.++.
T Consensus 495 fl~~~dvl~id~dgged~rl~~~i~~~ls~-------e~~~~~~~~~ivv~t~~s~~-----~lp~~i~~~f~~ei~~~~ 562 (953)
T KOG0736|consen 495 FLRNLDVLGIDQDGGEDARLLKVIRHLLSN-------EDFKFSCPPVIVVATTSSIE-----DLPADIQSLFLHEIEVPA 562 (953)
T ss_pred EEeccceeeecCCCchhHHHHHHHHHHHhc-------ccccCCCCceEEEEeccccc-----cCCHHHHHhhhhhccCCC
Confidence 999999887777663 4567778888772 11111234678889887654 69999999987 899999
Q ss_pred CChhHHHHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHHHhhcCCCCCCccccChhhHHHHhhhhhcccCCCccCCH
Q psy568 567 PGETSLKQIYGTFSRAMLRLIPPLRGYADALTNAMVELYLASQEKFTQDMQPHYVYSPREMTRWVRGICEAIRPLESLTV 646 (1614)
Q Consensus 567 p~~~~l~~I~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~hY~F~lRdl~~v~~~i~~~~~~~~~~~~ 646 (1614)
|++++..+|++-+..... +... +.. +....+ .-.|+++|+.....++-..... .....
T Consensus 563 lse~qRl~iLq~y~~~~~-~n~~------------v~~-k~~a~~-------t~gfs~~~L~~l~~~~s~~~~~-~i~~~ 620 (953)
T KOG0736|consen 563 LSEEQRLEILQWYLNHLP-LNQD------------VNL-KQLARK-------TSGFSFGDLEALVAHSSLAAKT-RIKNK 620 (953)
T ss_pred CCHHHHHHHHHHHHhccc-cchH------------HHH-HHHHHh-------cCCCCHHHHHHHhcCchHHHHH-HHHhh
Confidence 999999999877665432 1111 000 011111 1346777877766655211000 00000
Q ss_pred HHHHHHHHHhh--hhhhcccCCChhHHHHHHHHHHHHHHhhcCCcchhhcccCceeccCCcCCCcccC-hhHHHHHHHHH
Q psy568 647 EGLVRLWAHEA--LRLFQDRLVNDVERQWTNENIDAVAMKYFSNIDKEVLARPILYSNWLSKNYVPVG-TTELREYVQAR 723 (1614)
Q Consensus 647 ~~l~~lw~hE~--~Rvf~DRL~~~~d~~~~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~l~~~~~~~ 723 (1614)
.+.....||- .-.-..-++..+|- ...+.+. ++.|++.-..+.. | +-.|..++ .++.+..+...
T Consensus 621 -~l~g~~~~~~~~~~~~~~~~l~~edf---~kals~~-~~~fs~aiGAPKI-P-------nV~WdDVGGLeevK~eIldT 687 (953)
T KOG0736|consen 621 -GLAGGLQEEDEGELCAAGFLLTEEDF---DKALSRL-QKEFSDAIGAPKI-P-------NVSWDDVGGLEEVKTEILDT 687 (953)
T ss_pred -cccccchhccccccccccceecHHHH---HHHHHHH-HHhhhhhcCCCCC-C-------ccchhcccCHHHHHHHHHHH
Confidence 0000001110 00011122333332 2222221 2223221111111 1 11233332 24555544443
Q ss_pred HHHHHhhhcccchhhHHHHHHHHHHHHHHhccCCccEEEeecCCCChHHHHHHHHHHcCCeEEEEEe---cCCCChhcHH
Q psy568 724 LKVFYEEELDVQLVLFDEVLDHVLRIDRIFRQPQGHLLLIGVSGAGKTTLSRFVAFMNGLSVFQIRA---HNKYTGADFD 800 (1614)
Q Consensus 724 l~~~~~~~~~~~lvlf~~~i~hi~ri~Ril~~p~gh~LLvG~~GsGKtsl~rlaA~~~~~~~~~i~~---~~~~~~~df~ 800 (1614)
++- -++|..-+..-++...| +||.||||+|||-++|.+|.-+..+++++.- -.-| +.+-.
T Consensus 688 Iql---------------PL~hpeLfssglrkRSG-ILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNMY-VGqSE 750 (953)
T KOG0736|consen 688 IQL---------------PLKHPELFSSGLRKRSG-ILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNMY-VGQSE 750 (953)
T ss_pred hcC---------------cccChhhhhccccccce-eEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHHH-hcchH
Confidence 321 13444445555554444 9999999999999999999999999998852 1222 22334
Q ss_pred HHHHHHHHHhccCCCcEEEEEcCC
Q psy568 801 EDLRTVLRRSGCKNEKIAFLLDES 824 (1614)
Q Consensus 801 ~~lk~~l~~ag~~~~~~v~ll~d~ 824 (1614)
+.+|+++.+| ....|+|+++|+-
T Consensus 751 ~NVR~VFerA-R~A~PCVIFFDEL 773 (953)
T KOG0736|consen 751 ENVREVFERA-RSAAPCVIFFDEL 773 (953)
T ss_pred HHHHHHHHHh-hccCCeEEEeccc
Confidence 6799999998 4678999999874
No 25
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.50 E-value=2.1e-14 Score=149.32 Aligned_cols=132 Identities=31% Similarity=0.431 Sum_probs=98.4
Q ss_pred CEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCCHHHHHhHhhcccceeecCCccccccccCCceEEEEeccCCCC
Q psy568 418 PLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTPELLLKTFDHYCEYRKTPNGVILSPIQLGKWLVLFCDEINLP 497 (1614)
Q Consensus 418 ~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~~~~l~~~~~~~~~~~~~~~g~~~~p~~~gk~~vlfiDdin~p 497 (1614)
||+|+||||||||++++.+++.+ +.++..+++++.++.+++.+.+........+.+|.+..+.+ +..+++|||+|+
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~-~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~--~~~il~lDEin~- 76 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALL-GRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMR--KGGILVLDEINR- 76 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH-TCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHH--EEEEEEESSCGG-
T ss_pred CEEEECCCCCCHHHHHHHHHHHh-hcceEEEEeccccccccceeeeeeccccccccccccccccc--ceeEEEECCccc-
Confidence 69999999999999999999888 88899999999999999999876422111222376666653 457777899999
Q ss_pred CccccCcccHHHHHHHHHHcCceeeCCCCceEeec-------CeEEEEeecCCCCCCCCCCcccccccc
Q psy568 498 DMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLE-------RIQCVGACNPPTDPGRKPLSHRFLRHV 559 (1614)
Q Consensus 498 ~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~-------~~~~iaa~n~~~~~g~~~l~~r~~r~f 559 (1614)
+...+++.|.++++.+.+..+........+ ++++||||||.+ .+++.++++|++||
T Consensus 77 -----a~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~-~~~~~l~~al~~Rf 139 (139)
T PF07728_consen 77 -----APPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRD-KGRKELSPALLDRF 139 (139)
T ss_dssp -------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST---TTTTCHHHHTT-
T ss_pred -----CCHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCC-CCcCcCCHHHHhhC
Confidence 666799999999999887755444443333 499999999987 78999999999998
No 26
>KOG0735|consensus
Probab=99.47 E-value=2.3e-12 Score=153.59 Aligned_cols=317 Identities=19% Similarity=0.300 Sum_probs=178.4
Q ss_pred HhcCCCEEEecCCCCchHHHHHHHHhcCCCC---ceEEEEccc--CCCHHHHHhHhhcccceeecCCccccccccCCceE
Q psy568 413 LAEHKPLVLCGPPGSGKTMTLLSALRALPDM---EVVSLNFSS--ATTPELLLKTFDHYCEYRKTPNGVILSPIQLGKWL 487 (1614)
Q Consensus 413 l~~~~~vLL~Gp~GtGKT~lv~~~~~~l~~~---~~~~i~~s~--~t~~~~l~~~~~~~~~~~~~~~g~~~~p~~~gk~~ 487 (1614)
+-.+.++||.||+|||||.+++.++....+. .+..++||. .+..+.+|+.+...+.. +.-++| .
T Consensus 428 v~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse-----~~~~~P------S 496 (952)
T KOG0735|consen 428 VFRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSE-----ALWYAP------S 496 (952)
T ss_pred ccccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHHHHHHHHHHHH-----HHhhCC------c
Confidence 4567889999999999999999999877532 245677774 34456777777654431 333445 5
Q ss_pred EEEeccCCCCCc--cc------cCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCCCcccccc--
Q psy568 488 VLFCDEINLPDM--DK------YATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLR-- 557 (1614)
Q Consensus 488 vlfiDdin~p~~--d~------~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r-- 557 (1614)
|+.+||++.... +. .+.+....+|.|++..-+-+. ..+.+||+.+.- ..++++|.+
T Consensus 497 iIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~---------~~ia~Iat~qe~-----qtl~~~L~s~~ 562 (952)
T KOG0735|consen 497 IIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRN---------RKIAVIATGQEL-----QTLNPLLVSPL 562 (952)
T ss_pred EEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccC---------cEEEEEEechhh-----hhcChhhcCcc
Confidence 677799996432 11 123445567777765422111 137788887644 356666653
Q ss_pred ccc-EEEecCCChhHHHHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHHHhhcCCCCCCccccChhhHHHHhhhhhc
Q psy568 558 HVP-VIYVDYPGETSLKQIYGTFSRAMLRLIPPLRGYADALTNAMVELYLASQEKFTQDMQPHYVYSPREMTRWVRGICE 636 (1614)
Q Consensus 558 ~f~-~i~i~~p~~~~l~~I~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~hY~F~lRdl~~v~~~i~~ 636 (1614)
+|. ++.++.|...+...|+..+++..+. ......++++....+. |.++||.-.+.+..
T Consensus 563 ~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~----------~~~~~dLd~ls~~TEG----------y~~~DL~ifVeRai- 621 (952)
T KOG0735|consen 563 LFQIVIALPAPAVTRRKEILTTIFSKNLS----------DITMDDLDFLSVKTEG----------YLATDLVIFVERAI- 621 (952)
T ss_pred ceEEEEecCCcchhHHHHHHHHHHHhhhh----------hhhhHHHHHHHHhcCC----------ccchhHHHHHHHHH-
Confidence 666 7899999999999998887765431 1122222222111111 34555554444332
Q ss_pred ccCCCccCCHHHHHHHHHHhhhhhhcccCCChhHHHHHHHHHHHHHHhhcCCcchh-hcccCceeccCCcCCCcccC-hh
Q psy568 637 AIRPLESLTVEGLVRLWAHEALRLFQDRLVNDVERQWTNENIDAVAMKYFSNIDKE-VLARPILYSNWLSKNYVPVG-TT 714 (1614)
Q Consensus 637 ~~~~~~~~~~~~l~~lw~hE~~Rvf~DRL~~~~d~~~~~~~l~~~~~~~f~~~~~~-~~~~~~~~~~~~~~~~~~v~-~~ 714 (1614)
|+++ ..|..+. .+-...+.+...+..+-+..-.. .+..+. +-.+..++ ..
T Consensus 622 ------------------~~a~---leris~~-~klltke~f~ksL~~F~P~aLR~ik~~k~t------gi~w~digg~~ 673 (952)
T KOG0735|consen 622 ------------------HEAF---LERISNG-PKLLTKELFEKSLKDFVPLALRGIKLVKST------GIRWEDIGGLF 673 (952)
T ss_pred ------------------HHHH---HHHhccC-cccchHHHHHHHHHhcChHHhhhccccccC------CCCceecccHH
Confidence 3332 1111111 11111122222222221210000 000000 01122222 23
Q ss_pred HHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHH-----hccCCccEEEeecCCCChHHHHHHHHHHcCCeEEEEE
Q psy568 715 ELREYVQARLKVFYEEELDVQLVLFDEVLDHVLRIDRI-----FRQPQGHLLLIGVSGAGKTTLSRFVAFMNGLSVFQIR 789 (1614)
Q Consensus 715 ~l~~~~~~~l~~~~~~~~~~~lvlf~~~i~hi~ri~Ri-----l~~p~gh~LLvG~~GsGKtsl~rlaA~~~~~~~~~i~ 789 (1614)
+.++.+.+. ++...+...+ |+.+.| +||.||+|||||-|+-.+|..++..++.+.
T Consensus 674 ~~k~~l~~~-------------------i~~P~kyp~if~~~plr~~~g-iLLyGppGcGKT~la~a~a~~~~~~fisvK 733 (952)
T KOG0735|consen 674 EAKKVLEEV-------------------IEWPSKYPQIFANCPLRLRTG-ILLYGPPGCGKTLLASAIASNSNLRFISVK 733 (952)
T ss_pred HHHHHHHHH-------------------HhccccchHHHhhCCcccccc-eEEECCCCCcHHHHHHHHHhhCCeeEEEec
Confidence 333333332 2222332222 455666 999999999999999999999999999885
Q ss_pred ----ecCCCChhcHHHHHHHHHHHhccCCCcEEEEEcCCcc
Q psy568 790 ----AHNKYTGADFDEDLRTVLRRSGCKNEKIAFLLDESNV 826 (1614)
Q Consensus 790 ----~~~~~~~~df~~~lk~~l~~ag~~~~~~v~ll~d~~i 826 (1614)
+++..|-+| +.+|.++.+|. ..+|+++++|+-+-
T Consensus 734 GPElL~KyIGaSE--q~vR~lF~rA~-~a~PCiLFFDEfdS 771 (952)
T KOG0735|consen 734 GPELLSKYIGASE--QNVRDLFERAQ-SAKPCILFFDEFDS 771 (952)
T ss_pred CHHHHHHHhcccH--HHHHHHHHHhh-ccCCeEEEeccccc
Confidence 333344443 67888888884 56899999987543
No 27
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.44 E-value=2.3e-12 Score=169.96 Aligned_cols=137 Identities=25% Similarity=0.366 Sum_probs=88.4
Q ss_pred hcCCCEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCC------HHHHHhHhhcccceeecCCccccccccCCceE
Q psy568 414 AEHKPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATT------PELLLKTFDHYCEYRKTPNGVILSPIQLGKWL 487 (1614)
Q Consensus 414 ~~~~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~------~~~l~~~~~~~~~~~~~~~g~~~~p~~~gk~~ 487 (1614)
..++++||+||||||||++++.++..+ +.+++.++++...+ ...+...++ .+..+...
T Consensus 210 ~~~~giLL~GppGtGKT~laraia~~~-~~~~i~i~~~~i~~~~~g~~~~~l~~lf~---------------~a~~~~p~ 273 (733)
T TIGR01243 210 EPPKGVLLYGPPGTGKTLLAKAVANEA-GAYFISINGPEIMSKYYGESEERLREIFK---------------EAEENAPS 273 (733)
T ss_pred CCCceEEEECCCCCChHHHHHHHHHHh-CCeEEEEecHHHhcccccHHHHHHHHHHH---------------HHHhcCCc
Confidence 446889999999999999999888776 56677777643221 112222221 11123457
Q ss_pred EEEeccCCCCCcccc---Cc--ccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCCCcccccc--ccc
Q psy568 488 VLFCDEINLPDMDKY---AT--QRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLR--HVP 560 (1614)
Q Consensus 488 vlfiDdin~p~~d~~---g~--q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r--~f~ 560 (1614)
|+||||++......- +. ..+...|..+++. +.. ...+.+|+|+|++. .+++++.| ||.
T Consensus 274 il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~--l~~--------~~~vivI~atn~~~-----~ld~al~r~gRfd 338 (733)
T TIGR01243 274 IIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDG--LKG--------RGRVIVIGATNRPD-----ALDPALRRPGRFD 338 (733)
T ss_pred EEEeehhhhhcccccCCcchHHHHHHHHHHHHhhc--ccc--------CCCEEEEeecCChh-----hcCHHHhCchhcc
Confidence 899999997543321 11 2233344444442 111 12578899999886 58888876 675
Q ss_pred -EEEecCCChhHHHHHHHHHHH
Q psy568 561 -VIYVDYPGETSLKQIYGTFSR 581 (1614)
Q Consensus 561 -~i~i~~p~~~~l~~I~~~~~~ 581 (1614)
.+.++.|+.++...|+....+
T Consensus 339 ~~i~i~~P~~~~R~~Il~~~~~ 360 (733)
T TIGR01243 339 REIVIRVPDKRARKEILKVHTR 360 (733)
T ss_pred EEEEeCCcCHHHHHHHHHHHhc
Confidence 789999999999999875544
No 28
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.43 E-value=3.7e-11 Score=157.80 Aligned_cols=157 Identities=18% Similarity=0.270 Sum_probs=111.5
Q ss_pred EEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCCHHHHHhHhhcccceeec-CCccccccccCCceEEEEeccCCCC
Q psy568 419 LVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTPELLLKTFDHYCEYRKT-PNGVILSPIQLGKWLVLFCDEINLP 497 (1614)
Q Consensus 419 vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~~~~l~~~~~~~~~~~~~-~~g~~~~p~~~gk~~vlfiDdin~p 497 (1614)
+||+||||||||.+++.+++.+ +..++.+++|...+...+-..+.+...+... ..|.+....+.....|+++||++.
T Consensus 487 ~lf~Gp~GvGKT~lA~~la~~l-~~~~~~~d~se~~~~~~~~~lig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEiek- 564 (731)
T TIGR02639 487 FLFTGPTGVGKTELAKQLAEAL-GVHLERFDMSEYMEKHTVSRLIGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEK- 564 (731)
T ss_pred EEEECCCCccHHHHHHHHHHHh-cCCeEEEeCchhhhcccHHHHhcCCCCCcccchhhHHHHHHHhCCCeEEEEechhh-
Confidence 6999999999999999999887 6778999998765543333333222111111 113344443334568999999998
Q ss_pred CccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCC------C--------------CCCCcccccc
Q psy568 498 DMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDP------G--------------RKPLSHRFLR 557 (1614)
Q Consensus 498 ~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~------g--------------~~~l~~r~~r 557 (1614)
....+...|.+++|.|.+.+. .+......+..||+|+|.+... | +..++|.|+.
T Consensus 565 -----a~~~~~~~Ll~~ld~g~~~d~-~g~~vd~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~ 638 (731)
T TIGR02639 565 -----AHPDIYNILLQVMDYATLTDN-NGRKADFRNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRN 638 (731)
T ss_pred -----cCHHHHHHHHHhhccCeeecC-CCcccCCCCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHh
Confidence 555689999999998777653 4555667788899999875310 1 1336788999
Q ss_pred ccc-EEEecCCChhHHHHHHHHHHHhh
Q psy568 558 HVP-VIYVDYPGETSLKQIYGTFSRAM 583 (1614)
Q Consensus 558 ~f~-~i~i~~p~~~~l~~I~~~~~~~~ 583 (1614)
|+. ++.+.+.+.+++..|+...+..+
T Consensus 639 Rid~Vi~F~pLs~e~l~~Iv~~~L~~l 665 (731)
T TIGR02639 639 RLDAIIHFNPLSEEVLEKIVQKFVDEL 665 (731)
T ss_pred cCCeEEEcCCCCHHHHHHHHHHHHHHH
Confidence 996 88899999999999988776643
No 29
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.42 E-value=5.8e-11 Score=153.07 Aligned_cols=158 Identities=19% Similarity=0.303 Sum_probs=113.4
Q ss_pred CEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCCHHHHHhHhhcccceeec-CCccccccccCCceEEEEeccCCC
Q psy568 418 PLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTPELLLKTFDHYCEYRKT-PNGVILSPIQLGKWLVLFCDEINL 496 (1614)
Q Consensus 418 ~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~~~~l~~~~~~~~~~~~~-~~g~~~~p~~~gk~~vlfiDdin~ 496 (1614)
++||+||||||||.+++.+++.+ +.+++.++++.......+...+.....+... ..|.+..........|+|+||++.
T Consensus 490 ~~Lf~GP~GvGKT~lAk~LA~~l-~~~~i~id~se~~~~~~~~~LiG~~~gyvg~~~~g~L~~~v~~~p~sVlllDEiek 568 (758)
T PRK11034 490 SFLFAGPTGVGKTEVTVQLSKAL-GIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEK 568 (758)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh-CCCcEEeechhhcccccHHHHcCCCCCcccccccchHHHHHHhCCCcEEEeccHhh
Confidence 48999999999999999998887 6788999999877654444444322211111 123333333334468999999999
Q ss_pred CCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCC------CC--------------CCCCccccc
Q psy568 497 PDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTD------PG--------------RKPLSHRFL 556 (1614)
Q Consensus 497 p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~------~g--------------~~~l~~r~~ 556 (1614)
.+..+...|.+++|.|.+.+. .+......++.||+|+|.... .| +..+.|.|+
T Consensus 569 ------a~~~v~~~LLq~ld~G~ltd~-~g~~vd~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl 641 (758)
T PRK11034 569 ------AHPDVFNLLLQVMDNGTLTDN-NGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFR 641 (758)
T ss_pred ------hhHHHHHHHHHHHhcCeeecC-CCceecCCCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHH
Confidence 455589999999999888764 445566678889999995410 01 234778999
Q ss_pred cccc-EEEecCCChhHHHHHHHHHHHhh
Q psy568 557 RHVP-VIYVDYPGETSLKQIYGTFSRAM 583 (1614)
Q Consensus 557 r~f~-~i~i~~p~~~~l~~I~~~~~~~~ 583 (1614)
+|+. ++.+++++.+++..|....+..+
T Consensus 642 ~Rid~ii~f~~L~~~~l~~I~~~~l~~~ 669 (758)
T PRK11034 642 NRLDNIIWFDHLSTDVIHQVVDKFIVEL 669 (758)
T ss_pred ccCCEEEEcCCCCHHHHHHHHHHHHHHH
Confidence 9997 88999999999999987766544
No 30
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.39 E-value=2.9e-12 Score=153.04 Aligned_cols=161 Identities=27% Similarity=0.345 Sum_probs=128.1
Q ss_pred hHHHHHHHHHhcCCCEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCCHHHHHhHhhcc-----cceeecCCcccc
Q psy568 404 RHESLLYTWLAEHKPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTPELLLKTFDHY-----CEYRKTPNGVIL 478 (1614)
Q Consensus 404 r~~~ll~~~l~~~~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~~~~l~~~~~~~-----~~~~~~~~g~~~ 478 (1614)
.....+...+..|.|+||.||||||||++++.+++.+ +.++..++|++.++++++.|...-. .....+.+|+++
T Consensus 31 ~~~~~~l~a~~~~~~vll~G~PG~gKT~la~~lA~~l-~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~ 109 (329)
T COG0714 31 EVIELALLALLAGGHVLLEGPPGVGKTLLARALARAL-GLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLF 109 (329)
T ss_pred HHHHHHHHHHHcCCCEEEECCCCccHHHHHHHHHHHh-CCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcc
Confidence 4455666788899999999999999999999999988 6899999999999999998886433 222333457666
Q ss_pred ccccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCCCccccccc
Q psy568 479 SPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLRH 558 (1614)
Q Consensus 479 ~p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r~ 558 (1614)
.+.+ .++|+||||. +...+...|.+.++.+.++.+..........+.++||+||....|.+++++++++|
T Consensus 110 ~~~~----~ill~DEInr------a~p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ldR 179 (329)
T COG0714 110 AAVR----VILLLDEINR------APPEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLDR 179 (329)
T ss_pred cccc----eEEEEecccc------CCHHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHhh
Confidence 5532 6899999999 55558888999999888777543334555689999999998888999999999999
Q ss_pred c-cEEEecCCChhHHHHH
Q psy568 559 V-PVIYVDYPGETSLKQI 575 (1614)
Q Consensus 559 f-~~i~i~~p~~~~l~~I 575 (1614)
| ..+++++|..++...+
T Consensus 180 f~~~~~v~yp~~~~e~~~ 197 (329)
T COG0714 180 FLLRIYVDYPDSEEEERI 197 (329)
T ss_pred EEEEEecCCCCchHHHHH
Confidence 9 7899999955554444
No 31
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.34 E-value=2.1e-12 Score=125.79 Aligned_cols=128 Identities=23% Similarity=0.277 Sum_probs=76.0
Q ss_pred CEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCCHHHHHhHhh--cccceeecCCccccccccCCceEEEEeccCC
Q psy568 418 PLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTPELLLKTFD--HYCEYRKTPNGVILSPIQLGKWLVLFCDEIN 495 (1614)
Q Consensus 418 ~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~~~~l~~~~~--~~~~~~~~~~g~~~~p~~~gk~~vlfiDdin 495 (1614)
||||.|+||+|||++++.+++.+ +..+.++.|++...++++.|.-- .....-...+|++. . -|+++||||
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~-~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif----~---~ill~DEiN 72 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSL-GLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIF----T---NILLADEIN 72 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHT-T--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT-----S---SEEEEETGG
T ss_pred CEeeECCCccHHHHHHHHHHHHc-CCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhh----h---ceeeecccc
Confidence 79999999999999999999887 77889999999999999998731 11111111124332 1 267789999
Q ss_pred CCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCCCccccccccc
Q psy568 496 LPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLRHVP 560 (1614)
Q Consensus 496 ~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r~f~ 560 (1614)
+ ++..+...|.+.|..+.+-.. +..+.....+.+|||+||....|..+||.+++.||.
T Consensus 73 r------appktQsAlLeam~Er~Vt~~-g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~DRF~ 130 (131)
T PF07726_consen 73 R------APPKTQSALLEAMEERQVTID-GQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLDRFM 130 (131)
T ss_dssp G------S-HHHHHHHHHHHHHSEEEET-TEEEE--SS-EEEEEE-TT--S------HHHHTTSS
T ss_pred c------CCHHHHHHHHHHHHcCeEEeC-CEEEECCCcEEEEEecCccccCceecCCHHHhcccc
Confidence 9 666678888888888775542 223334446999999999887899999999999995
No 32
>KOG0735|consensus
Probab=99.28 E-value=1.8e-10 Score=137.80 Aligned_cols=149 Identities=24% Similarity=0.372 Sum_probs=96.4
Q ss_pred HhcCCCEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCCHHHHHhHhhcccceeecCCccccccccCCceEEEEec
Q psy568 413 LAEHKPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTPELLLKTFDHYCEYRKTPNGVILSPIQLGKWLVLFCD 492 (1614)
Q Consensus 413 l~~~~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~~~~l~~~~~~~~~~~~~~~g~~~~p~~~gk~~vlfiD 492 (1614)
+....+|||+||||||||.++..+++.. +..++.+ -.|+.+-+.+.. .+... ... +.-++..++||+|+|
T Consensus 698 lr~~~giLLyGppGcGKT~la~a~a~~~-~~~fisv-----KGPElL~KyIGa-SEq~v--R~l-F~rA~~a~PCiLFFD 767 (952)
T KOG0735|consen 698 LRLRTGILLYGPPGCGKTLLASAIASNS-NLRFISV-----KGPELLSKYIGA-SEQNV--RDL-FERAQSAKPCILFFD 767 (952)
T ss_pred cccccceEEECCCCCcHHHHHHHHHhhC-CeeEEEe-----cCHHHHHHHhcc-cHHHH--HHH-HHHhhccCCeEEEec
Confidence 5567899999999999999988887765 4444433 355555444432 11111 011 222245678999999
Q ss_pred cCCCCCccc--cCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCCCcccccc--ccc-EEEecCC
Q psy568 493 EINLPDMDK--YATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLR--HVP-VIYVDYP 567 (1614)
Q Consensus 493 din~p~~d~--~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r--~f~-~i~i~~p 567 (1614)
|++..++.+ -.+.-+-.++.|++..- |.-. .+.++.++||+..|. -++|+++| |+. .++++.|
T Consensus 768 EfdSiAPkRGhDsTGVTDRVVNQlLTel---DG~E----gl~GV~i~aaTsRpd-----liDpALLRpGRlD~~v~C~~P 835 (952)
T KOG0735|consen 768 EFDSIAPKRGHDSTGVTDRVVNQLLTEL---DGAE----GLDGVYILAATSRPD-----LIDPALLRPGRLDKLVYCPLP 835 (952)
T ss_pred cccccCcccCCCCCCchHHHHHHHHHhh---cccc----ccceEEEEEecCCcc-----ccCHhhcCCCccceeeeCCCC
Confidence 999866543 11222334555555431 1111 134688899988886 68999987 444 7899999
Q ss_pred ChhHHHHHHHHHHHhh
Q psy568 568 GETSLKQIYGTFSRAM 583 (1614)
Q Consensus 568 ~~~~l~~I~~~~~~~~ 583 (1614)
+..+...|++.+...+
T Consensus 836 ~~~eRl~il~~ls~s~ 851 (952)
T KOG0735|consen 836 DEPERLEILQVLSNSL 851 (952)
T ss_pred CcHHHHHHHHHHhhcc
Confidence 9999999998876644
No 33
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.27 E-value=6.6e-12 Score=130.48 Aligned_cols=125 Identities=29% Similarity=0.467 Sum_probs=98.7
Q ss_pred EEEEecCCCCChhhHHHHHHHHHHHhhcCCceEEEeCCCCCCcCcccccccC--CCCccccchHHHHHHHHHhhhcCCCC
Q psy568 45 GLMMVGPSGSGKSTAWKVLLKALERYEGVEGVAHIIDPKAISKEALYGVLDP--NTREWTDGLFTHILRRIIDNVRGEIS 122 (1614)
Q Consensus 45 gVmlvG~~gsGKTt~~~~L~~al~~~~~~~~~~~~inPkais~~eLyG~~d~--~t~eW~DGvls~i~r~~~~~~~~~~~ 122 (1614)
+|||+||||||||++.+.+++.+ +.+ ...+--+...+..+|+|.+++ ...+|.||.+...+++
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~----~~~-~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~~---------- 65 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALL----GRP-VIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMRK---------- 65 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH----TCE-EEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHHE----------
T ss_pred CEEEECCCCCCHHHHHHHHHHHh----hcc-eEEEEeccccccccceeeeeecccccccccccccccccc----------
Confidence 59999999999999999999998 222 233344555799999999996 4568999999998873
Q ss_pred CceEEEEcc--CCChhhhhhhhhhhcCCCccccCCCceeeCCC------CceEEEEecccc----ccCccccccc
Q psy568 123 KRQWIIFDG--DVDPEWVENLNSVLDDNKLLTLPNGERLSLPP------NIRIMFEVQDLK----YATLATVSRC 185 (1614)
Q Consensus 123 ~~~WivfDG--~vd~~WiE~lnsvLDdnk~L~L~nGeri~l~~------~~~~iFEv~dL~----~ASPAtVSRc 185 (1614)
..|+++|. -+++..++.|+++||+++......++.+..++ ++++|+-..+-. ..+||+.+||
T Consensus 66 -~~il~lDEin~a~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~Rf 139 (139)
T PF07728_consen 66 -GGILVLDEINRAPPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLDRF 139 (139)
T ss_dssp -EEEEEESSCGG--HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHTT-
T ss_pred -eeEEEECCcccCCHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHhhC
Confidence 48999997 45799999999999999888777888887777 499999998888 8899999997
No 34
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=2.4e-11 Score=135.81 Aligned_cols=152 Identities=22% Similarity=0.312 Sum_probs=102.7
Q ss_pred HHHHhcCCCEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCCHHHHHhHhhcccceeecCCccccccccCCceEEE
Q psy568 410 YTWLAEHKPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTPELLLKTFDHYCEYRKTPNGVILSPIQLGKWLVL 489 (1614)
Q Consensus 410 ~~~l~~~~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~~~~l~~~~~~~~~~~~~~~g~~~~p~~~gk~~vl 489 (1614)
..-+...+.|||+||||||||.+++.+++.. +-.++.+..| +.+|+.+..-....+ . ++.-++...++|+
T Consensus 179 ~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T-~AtFIrvvgS-----ElVqKYiGEGaRlVR---e-lF~lArekaPsII 248 (406)
T COG1222 179 ELGIDPPKGVLLYGPPGTGKTLLAKAVANQT-DATFIRVVGS-----ELVQKYIGEGARLVR---E-LFELAREKAPSII 248 (406)
T ss_pred HcCCCCCCceEeeCCCCCcHHHHHHHHHhcc-CceEEEeccH-----HHHHHHhccchHHHH---H-HHHHHhhcCCeEE
Confidence 3456678999999999999999999888766 6667776543 445544432110000 1 1222335667999
Q ss_pred EeccCCCCCcccc-----CcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCCCcccccc--ccc-E
Q psy568 490 FCDEINLPDMDKY-----ATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLR--HVP-V 561 (1614)
Q Consensus 490 fiDdin~p~~d~~-----g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r--~f~-~ 561 (1614)
|||||+-...-.+ |...+.-.+-+|+..-.=|++. .|+.+|+|+|.+. .|+|+++| ||- .
T Consensus 249 FiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~-------~nvKVI~ATNR~D-----~LDPALLRPGR~DRk 316 (406)
T COG1222 249 FIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPR-------GNVKVIMATNRPD-----ILDPALLRPGRFDRK 316 (406)
T ss_pred EEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCC-------CCeEEEEecCCcc-----ccChhhcCCCcccce
Confidence 9999996543322 3334444444444332223432 4799999999987 79999998 665 7
Q ss_pred EEecCCChhHHHHHHHHHHHhh
Q psy568 562 IYVDYPGETSLKQIYGTFSRAM 583 (1614)
Q Consensus 562 i~i~~p~~~~l~~I~~~~~~~~ 583 (1614)
|.+|.|+.+....||+.+.+.+
T Consensus 317 IEfplPd~~gR~~Il~IHtrkM 338 (406)
T COG1222 317 IEFPLPDEEGRAEILKIHTRKM 338 (406)
T ss_pred eecCCCCHHHHHHHHHHHhhhc
Confidence 9999999999999998877765
No 35
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.23 E-value=7.9e-11 Score=126.26 Aligned_cols=133 Identities=19% Similarity=0.221 Sum_probs=88.9
Q ss_pred CCEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCCHHHHHhHhhcccceeecCCccccccccCCceEEEEeccCCC
Q psy568 417 KPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTPELLLKTFDHYCEYRKTPNGVILSPIQLGKWLVLFCDEINL 496 (1614)
Q Consensus 417 ~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~~~~l~~~~~~~~~~~~~~~g~~~~p~~~gk~~vlfiDdin~ 496 (1614)
-|+||+||||+|||+++.-+++.+ +.++..++-+.-..+.++.+.+.. -++.-|+||||||.
T Consensus 51 ~h~lf~GPPG~GKTTLA~IIA~e~-~~~~~~~sg~~i~k~~dl~~il~~-----------------l~~~~ILFIDEIHR 112 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLARIIANEL-GVNFKITSGPAIEKAGDLAAILTN-----------------LKEGDILFIDEIHR 112 (233)
T ss_dssp -EEEEESSTTSSHHHHHHHHHHHC-T--EEEEECCC--SCHHHHHHHHT-------------------TT-EEEECTCCC
T ss_pred ceEEEECCCccchhHHHHHHHhcc-CCCeEeccchhhhhHHHHHHHHHh-----------------cCCCcEEEEechhh
Confidence 379999999999999988777777 666666655444455666665532 12236899999999
Q ss_pred CCccccCcccHHHHHHHHHHcCceee--CCC--C--ceEeecCeEEEEeecCCCCCCCCCCcccccccccEE-EecCCCh
Q psy568 497 PDMDKYATQRVISFLRQLIEQRGFYR--PAD--K--QWVSLERIQCVGACNPPTDPGRKPLSHRFLRHVPVI-YVDYPGE 569 (1614)
Q Consensus 497 p~~d~~g~q~~lelLrqlld~~~~~~--~~~--~--~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r~f~~i-~i~~p~~ 569 (1614)
-+..+.+.|-..|+.+.+-. ..+ . .-..++.|++|||++..+ .|++.|..||.++ .+++.+.
T Consensus 113 ------lnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g-----~ls~pLrdRFgi~~~l~~Y~~ 181 (233)
T PF05496_consen 113 ------LNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAG-----LLSSPLRDRFGIVLRLEFYSE 181 (233)
T ss_dssp --------HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGC-----CTSHCCCTTSSEEEE----TH
T ss_pred ------ccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeecccc-----ccchhHHhhcceecchhcCCH
Confidence 45557899999999887522 221 1 234668999999999876 6999999999976 7999999
Q ss_pred hHHHHHHHH
Q psy568 570 TSLKQIYGT 578 (1614)
Q Consensus 570 ~~l~~I~~~ 578 (1614)
+++.+|...
T Consensus 182 ~el~~Iv~r 190 (233)
T PF05496_consen 182 EELAKIVKR 190 (233)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999764
No 36
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.22 E-value=3.1e-09 Score=141.34 Aligned_cols=158 Identities=15% Similarity=0.228 Sum_probs=112.5
Q ss_pred EEEecCCCCchHHHHHHHHhcCC--CCceEEEEcccCCCHHHHHhHhhcccceeec-CCccccccccCCceEEEEeccCC
Q psy568 419 LVLCGPPGSGKTMTLLSALRALP--DMEVVSLNFSSATTPELLLKTFDHYCEYRKT-PNGVILSPIQLGKWLVLFCDEIN 495 (1614)
Q Consensus 419 vLL~Gp~GtGKT~lv~~~~~~l~--~~~~~~i~~s~~t~~~~l~~~~~~~~~~~~~-~~g~~~~p~~~gk~~vlfiDdin 495 (1614)
+||+||+|||||.+++.+++.+. +..++.+++|..+....+...+.+...+... ..|.+....+.....|+++||++
T Consensus 542 ~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeie 621 (821)
T CHL00095 542 FLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIE 621 (821)
T ss_pred EEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHhcCCCCcccCcCccchHHHHHHhCCCeEEEECChh
Confidence 78999999999999999998774 3568889988776655554444332222111 11334334333445789999999
Q ss_pred CCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCC--------CCC-------------------
Q psy568 496 LPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTD--------PGR------------------- 548 (1614)
Q Consensus 496 ~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~--------~g~------------------- 548 (1614)
. .+..+...|.+++|.|.+-+. .+......+..||.|+|.+.. .|.
T Consensus 622 k------a~~~v~~~Llq~le~g~~~d~-~g~~v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~ 694 (821)
T CHL00095 622 K------AHPDIFNLLLQILDDGRLTDS-KGRTIDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLV 694 (821)
T ss_pred h------CCHHHHHHHHHHhccCceecC-CCcEEecCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHH
Confidence 8 566689999999999887774 456667789999999997531 010
Q ss_pred -----CCCcccccccc-cEEEecCCChhHHHHHHHHHHHhh
Q psy568 549 -----KPLSHRFLRHV-PVIYVDYPGETSLKQIYGTFSRAM 583 (1614)
Q Consensus 549 -----~~l~~r~~r~f-~~i~i~~p~~~~l~~I~~~~~~~~ 583 (1614)
..+.|.|++|+ .++.+.+.+.+++..|....+..+
T Consensus 695 ~~~~~~~f~peflnRid~ii~F~pL~~~~l~~Iv~~~l~~l 735 (821)
T CHL00095 695 NEELKQFFRPEFLNRLDEIIVFRQLTKNDVWEIAEIMLKNL 735 (821)
T ss_pred HHHHHHhcCHHHhccCCeEEEeCCCCHHHHHHHHHHHHHHH
Confidence 11456789998 689999999999999988776654
No 37
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.21 E-value=1.2e-10 Score=138.36 Aligned_cols=152 Identities=22% Similarity=0.311 Sum_probs=105.3
Q ss_pred HHHHHhcCCCEEEecCCCCchHHHHHHHHhcCCCC----ceEEEEcccCCCHHHHHhHhhcccceeecCCcccc----cc
Q psy568 409 LYTWLAEHKPLVLCGPPGSGKTMTLLSALRALPDM----EVVSLNFSSATTPELLLKTFDHYCEYRKTPNGVIL----SP 480 (1614)
Q Consensus 409 l~~~l~~~~~vLL~Gp~GtGKT~lv~~~~~~l~~~----~~~~i~~s~~t~~~~l~~~~~~~~~~~~~~~g~~~----~p 480 (1614)
+...+..+++++|+||||||||++++.++..+.+. .+..+.|+...+..++.+.+...........|.+. .+
T Consensus 187 l~~~L~~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vgy~~~~G~f~~~~~~A 266 (459)
T PRK11331 187 ILKRLTIKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQA 266 (459)
T ss_pred HHHHHhcCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCCCeEecCchHHHHHHHH
Confidence 34456689999999999999999999988776432 34568888888888877554221111112235442 11
Q ss_pred c-cCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcC--c-------eeeCCC-CceEeecCeEEEEeecCCCCCCCC
Q psy568 481 I-QLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQR--G-------FYRPAD-KQWVSLERIQCVGACNPPTDPGRK 549 (1614)
Q Consensus 481 ~-~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~--~-------~~~~~~-~~~~~~~~~~~iaa~n~~~~~g~~ 549 (1614)
. ..+++.++||||||++.+++ ++.-+.++++++ + .|+..+ ..+...+|+.||||||..+ .+..
T Consensus 267 ~~~p~~~~vliIDEINRani~k-----iFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~D-rs~~ 340 (459)
T PRK11331 267 KEQPEKKYVFIIDEINRANLSK-----VFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPENVYIIGLMNTAD-RSLA 340 (459)
T ss_pred HhcccCCcEEEEehhhccCHHH-----hhhhhhhhccccccccccceeeeccccccccccCCCCeEEEEecCccc-cchh
Confidence 1 11356889999999977664 455567888864 2 333322 3466668999999999986 4666
Q ss_pred CCcccccccccEEEecC
Q psy568 550 PLSHRFLRHVPVIYVDY 566 (1614)
Q Consensus 550 ~l~~r~~r~f~~i~i~~ 566 (1614)
.++.+|.|||..+.+.+
T Consensus 341 ~lD~AlrRRF~fi~i~p 357 (459)
T PRK11331 341 VVDYALRRRFSFIDIEP 357 (459)
T ss_pred hccHHHHhhhheEEecC
Confidence 89999999999998875
No 38
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.19 E-value=1.1e-09 Score=144.60 Aligned_cols=145 Identities=23% Similarity=0.326 Sum_probs=89.8
Q ss_pred hcCCCEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCCHHHHHhHhhcccceeecCCccccccccCCceEEEEecc
Q psy568 414 AEHKPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTPELLLKTFDHYCEYRKTPNGVILSPIQLGKWLVLFCDE 493 (1614)
Q Consensus 414 ~~~~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~~~~l~~~~~~~~~~~~~~~g~~~~p~~~gk~~vlfiDd 493 (1614)
...+.+||+||||||||++++.++..+ +.+++.+..+...+ .+-+..++.. ..++.-++....+|+||||
T Consensus 485 ~~~~giLL~GppGtGKT~lakalA~e~-~~~fi~v~~~~l~~------~~vGese~~i---~~~f~~A~~~~p~iifiDE 554 (733)
T TIGR01243 485 RPPKGVLLFGPPGTGKTLLAKAVATES-GANFIAVRGPEILS------KWVGESEKAI---REIFRKARQAAPAIIFFDE 554 (733)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhc-CCCEEEEehHHHhh------cccCcHHHHH---HHHHHHHHhcCCEEEEEEC
Confidence 445779999999999999999888876 66777776543211 1111111000 0111111234458999999
Q ss_pred CCCCCccc--cCcccH-HHHHHHHHHc-CceeeCCCCceEeecCeEEEEeecCCCCCCCCCCcccccc--ccc-EEEecC
Q psy568 494 INLPDMDK--YATQRV-ISFLRQLIEQ-RGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLR--HVP-VIYVDY 566 (1614)
Q Consensus 494 in~p~~d~--~g~q~~-lelLrqlld~-~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r--~f~-~i~i~~ 566 (1614)
++...... .+...+ -.++.+++.. .|+- ...++.+|||+|.+. .++++++| ||. .++++.
T Consensus 555 id~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~--------~~~~v~vI~aTn~~~-----~ld~allRpgRfd~~i~v~~ 621 (733)
T TIGR01243 555 IDAIAPARGARFDTSVTDRIVNQLLTEMDGIQ--------ELSNVVVIAATNRPD-----ILDPALLRPGRFDRLILVPP 621 (733)
T ss_pred hhhhhccCCCCCCccHHHHHHHHHHHHhhccc--------CCCCEEEEEeCCChh-----hCCHhhcCCCccceEEEeCC
Confidence 98643221 111111 1233333322 1111 123688999999986 69999998 887 899999
Q ss_pred CChhHHHHHHHHHHH
Q psy568 567 PGETSLKQIYGTFSR 581 (1614)
Q Consensus 567 p~~~~l~~I~~~~~~ 581 (1614)
|+.++...|++....
T Consensus 622 Pd~~~R~~i~~~~~~ 636 (733)
T TIGR01243 622 PDEEARKEIFKIHTR 636 (733)
T ss_pred cCHHHHHHHHHHHhc
Confidence 999999999876544
No 39
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=99.19 E-value=4.6e-10 Score=141.32 Aligned_cols=201 Identities=23% Similarity=0.409 Sum_probs=151.7
Q ss_pred hhhhhHHHHHHHHHHHHhhhhhHHHhhcCCCCcHHHHHHHHHHHHhcCCCCC-----CHHHHHHHhchhhhHHHHHhhcC
Q psy568 1110 LAQVEPAVMDAQQAVKEIKKQQLVELRSMANPPSVVKLALESICLLLGENAT-----DWKAIRAVVMRENFINSIVSNFN 1184 (1614)
Q Consensus 1110 l~~a~p~l~~A~~al~~l~~~dl~Eirs~~~PP~~V~~v~eavc~Llg~~~~-----~W~~~k~~l~~~~F~~~l~~~~d 1184 (1614)
+..|+-..++...-++..-+....|++.+-+||..++...++|.++-..+.. -|+.+..++ |..++. ...
T Consensus 2531 I~daE~~d~~i~rlIk~ef~s~~~eV~v~i~~~eI~~S~~~~vf~~se~~Sgdm~~~~~k~l~~v~----Fvs~v~-~~E 2605 (3164)
T COG5245 2531 IGDAEALDEEIGRLIKEEFKSNLSEVKVMINPPEIVRSTVEAVFWLSEGRSGDMGSIEWKQLIQVM----FVSKVL-GCE 2605 (3164)
T ss_pred ecchhhhhhhhhhhhhHHHhcCCceEEEEECCCeeEEecceeEEEEeecCCCchhHHHHHHhHhhh----eehhhh-hhh
Confidence 4445555555566677788899999999999999999998888777533221 266555544 887776 554
Q ss_pred CCCCcHHHHHHHHhhhcCCCCCCHHHHHhhhhchhHHHHHHHHHHHHHHHHhhhhHHHH--HHHHHHHHHHHHHHHHHHH
Q psy568 1185 TEMITDEVREKMHSRYLSNPDYSYEKANRASMACGPMVKWAIAQISYADMLKKVEPLRL--ELKSLEVQASENKAKGEET 1262 (1614)
Q Consensus 1185 ~~~i~~~~~~~l~~~~~~~~~f~~~~~~~~S~aa~~L~~Wv~Ai~~y~~v~~~v~P~~~--~l~~~~~~~~~~~~~l~~~ 1262 (1614)
. .|++.+ . ...+-|-|..++.-.+++|++.|.-|+.|=..|.+......|..+ ++..+...+++.....++.
T Consensus 2606 T-~i~d~~----~-~~~~~~lf~~~~~l~~lk~~~~l~L~~L~~~ll~~L~~s~~nm~~tDEI~vll~NlKk~~~~Ie~~ 2679 (3164)
T COG5245 2606 T-EIPDAL----E-KLVSGPLFVHEKALNALKACGSLFLWVLARYLLAKLMLSISNMEQTDEIAVLLHNLKKSRKEIEEE 2679 (3164)
T ss_pred h-hhhHHH----H-hhhccchhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHhHHHHHHHHHHH
Confidence 3 444333 3 355667799999999999999999999999999999999999887 8888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhH
Q psy568 1263 KDLITQLEKSIASYKDEYAQLIAQATAIKTDLDNVQAKFYEYAQLIAQATAIKTDLDNVQAKVERSMALLKSLGIERERW 1342 (1614)
Q Consensus 1263 ~~~l~~~e~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~rl~~a~~l~~~L~~e~~rW 1342 (1614)
..+..+++.++..|..+|....+....+..+++..-+ +-.--..-+..+.++-++|
T Consensus 2680 ~sEs~ei~~riD~L~~eY~~svk~~~sI~v~~~~F~~------------------------~~~~y~~si~~~~s~f~k~ 2735 (3164)
T COG5245 2680 ESESMEIEDRIDALKSEYNASVKRLESIRVEIAMFDE------------------------KALMYNKSICELSSEFEKW 2735 (3164)
T ss_pred HhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHhhhhHHHHHHHHHHH
Confidence 8889999999999999999888887777544433322 2222345566677788888
Q ss_pred HHH
Q psy568 1343 EAT 1345 (1614)
Q Consensus 1343 ~~~ 1345 (1614)
-..
T Consensus 2736 ~~~ 2738 (3164)
T COG5245 2736 RRM 2738 (3164)
T ss_pred HHH
Confidence 765
No 40
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.11 E-value=1.6e-09 Score=115.31 Aligned_cols=164 Identities=18% Similarity=0.277 Sum_probs=111.6
Q ss_pred eeeCcchhhHHHHHHHHHhc--------CCCEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCCHHHHHhHhhccc
Q psy568 396 VVPTLDTVRHESLLYTWLAE--------HKPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTPELLLKTFDHYC 467 (1614)
Q Consensus 396 ~vpT~~t~r~~~ll~~~l~~--------~~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~~~~l~~~~~~~~ 467 (1614)
+|--.+..+--.++...+.+ .++||++||||||||++++.++... +.+++.++-. .++|..-+--
T Consensus 123 ViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~-kvp~l~vkat------~liGehVGdg 195 (368)
T COG1223 123 VIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEA-KVPLLLVKAT------ELIGEHVGDG 195 (368)
T ss_pred hhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhccc-CCceEEechH------HHHHHHhhhH
Confidence 45555666666666666654 4899999999999999998887665 6677766532 3333332211
Q ss_pred ceeecCCccccccccCCceEEEEeccCCCCCccc-cC--cccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCC
Q psy568 468 EYRKTPNGVILSPIQLGKWLVLFCDEINLPDMDK-YA--TQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPT 544 (1614)
Q Consensus 468 ~~~~~~~g~~~~p~~~gk~~vlfiDdin~p~~d~-~g--~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~ 544 (1614)
.++- ..++.-++...+||+||||++-...|. |- ...+-|.+..|+..-. ..+.-.++..|||+|.|.
T Consensus 196 ar~I---hely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelD-------gi~eneGVvtIaaTN~p~ 265 (368)
T COG1223 196 ARRI---HELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELD-------GIKENEGVVTIAATNRPE 265 (368)
T ss_pred HHHH---HHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhcc-------CcccCCceEEEeecCChh
Confidence 1111 112211223456999999999888875 21 2457788888876421 112335788999999886
Q ss_pred CCCCCCCccccccccc-EEEecCCChhHHHHHHHHHHH
Q psy568 545 DPGRKPLSHRFLRHVP-VIYVDYPGETSLKQIYGTFSR 581 (1614)
Q Consensus 545 ~~g~~~l~~r~~r~f~-~i~i~~p~~~~l~~I~~~~~~ 581 (1614)
-|+++..+||- -|.+..|+.++...|+..+..
T Consensus 266 -----~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k 298 (368)
T COG1223 266 -----LLDPAIRSRFEEEIEFKLPNDEERLEILEYYAK 298 (368)
T ss_pred -----hcCHHHHhhhhheeeeeCCChHHHHHHHHHHHH
Confidence 69999999999 799999999999999776554
No 41
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.10 E-value=2.8e-10 Score=129.84 Aligned_cols=148 Identities=16% Similarity=0.194 Sum_probs=97.3
Q ss_pred hcCCCEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCC-----H-HHHHhHhhcccceeecCCccccccccCCceE
Q psy568 414 AEHKPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATT-----P-ELLLKTFDHYCEYRKTPNGVILSPIQLGKWL 487 (1614)
Q Consensus 414 ~~~~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~-----~-~~l~~~~~~~~~~~~~~~g~~~~p~~~gk~~ 487 (1614)
+....++|+||||||||.+++.+++.+ +.+++.++.++-.+ + ..+...|...-.. ....++.+
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~el-g~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~----------a~~~~aPc 214 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKM-GIEPIVMSAGELESENAGEPGKLIRQRYREAADI----------IKKKGKMS 214 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHc-CCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHH----------hhccCCCe
Confidence 455778999999999999999999987 77777777654432 2 2333333211100 00136779
Q ss_pred EEEeccCCCCCccccCc------ccHHHHHHHHHHc------CceeeCCCCceEeecCeEEEEeecCCCCCCCCCCcccc
Q psy568 488 VLFCDEINLPDMDKYAT------QRVISFLRQLIEQ------RGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRF 555 (1614)
Q Consensus 488 vlfiDdin~p~~d~~g~------q~~lelLrqlld~------~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~ 555 (1614)
|||||||+......-++ |-+...|-.++|+ .|.|.. .....++.+|+|+|.|. .|+++|
T Consensus 215 VLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~----~~~~~~V~VIaTTNrpd-----~LDpAL 285 (413)
T PLN00020 215 CLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWRE----KEEIPRVPIIVTGNDFS-----TLYAPL 285 (413)
T ss_pred EEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccc----cccCCCceEEEeCCCcc-----cCCHhH
Confidence 99999999533321122 2223455555664 333410 01235688999999987 799999
Q ss_pred cc--cccEEEecCCChhHHHHHHHHHHHh
Q psy568 556 LR--HVPVIYVDYPGETSLKQIYGTFSRA 582 (1614)
Q Consensus 556 ~r--~f~~i~i~~p~~~~l~~I~~~~~~~ 582 (1614)
+| ||-.+ +..|+.++...|++.+++.
T Consensus 286 lRpGRfDk~-i~lPd~e~R~eIL~~~~r~ 313 (413)
T PLN00020 286 IRDGRMEKF-YWAPTREDRIGVVHGIFRD 313 (413)
T ss_pred cCCCCCCce-eCCCCHHHHHHHHHHHhcc
Confidence 99 99864 4689999999998877664
No 42
>KOG0733|consensus
Probab=99.10 E-value=2.7e-10 Score=134.31 Aligned_cols=148 Identities=24% Similarity=0.399 Sum_probs=104.9
Q ss_pred HHhcCCCEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCCHHHHHhHhhcccceeecCCccccccccCCceEEEEe
Q psy568 412 WLAEHKPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTPELLLKTFDHYCEYRKTPNGVILSPIQLGKWLVLFC 491 (1614)
Q Consensus 412 ~l~~~~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~~~~l~~~~~~~~~~~~~~~g~~~~p~~~gk~~vlfi 491 (1614)
-+.....|||+||||||||.+++.++..- +.+++.+. .|+ +..++-+..++.. ...+.++ +...+||||+
T Consensus 541 Gi~~PsGvLL~GPPGCGKTLlAKAVANEa-g~NFisVK-----GPE-LlNkYVGESErAV--R~vFqRA-R~saPCVIFF 610 (802)
T KOG0733|consen 541 GIDAPSGVLLCGPPGCGKTLLAKAVANEA-GANFISVK-----GPE-LLNKYVGESERAV--RQVFQRA-RASAPCVIFF 610 (802)
T ss_pred CCCCCCceEEeCCCCccHHHHHHHHhhhc-cCceEeec-----CHH-HHHHHhhhHHHHH--HHHHHHh-hcCCCeEEEe
Confidence 45567889999999999999998887655 66666553 444 3344444333222 1223333 3466799999
Q ss_pred ccCCC--CCccccCcccHHHHHHHHHHc-CceeeCCCCceEeecCeEEEEeecCCCCCCCCCCcccccc--ccc-EEEec
Q psy568 492 DEINL--PDMDKYATQRVISFLRQLIEQ-RGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLR--HVP-VIYVD 565 (1614)
Q Consensus 492 Ddin~--p~~d~~g~q~~lelLrqlld~-~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r--~f~-~i~i~ 565 (1614)
||++- |..+.-++...--++.||+.. .|+-++ .++.+|||+|.|. -++++++| ||- +++++
T Consensus 611 DEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R--------~gV~viaATNRPD-----iIDpAiLRPGRlDk~LyV~ 677 (802)
T KOG0733|consen 611 DEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEER--------RGVYVIAATNRPD-----IIDPAILRPGRLDKLLYVG 677 (802)
T ss_pred cchhhcCcccCCCCchhHHHHHHHHHHHhcccccc--------cceEEEeecCCCc-----ccchhhcCCCccCceeeec
Confidence 99995 555555665566677777753 344433 3688999999997 69999997 665 89999
Q ss_pred CCChhHHHHHHHHHHHh
Q psy568 566 YPGETSLKQIYGTFSRA 582 (1614)
Q Consensus 566 ~p~~~~l~~I~~~~~~~ 582 (1614)
.|+.++...|++++.+.
T Consensus 678 lPn~~eR~~ILK~~tkn 694 (802)
T KOG0733|consen 678 LPNAEERVAILKTITKN 694 (802)
T ss_pred CCCHHHHHHHHHHHhcc
Confidence 99999999999888774
No 43
>KOG0730|consensus
Probab=99.06 E-value=4.3e-10 Score=135.26 Aligned_cols=184 Identities=21% Similarity=0.265 Sum_probs=114.9
Q ss_pred HHHHHhcCCCEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCCHHHHHhHhhcccceeecCCccccccccCCceEE
Q psy568 409 LYTWLAEHKPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTPELLLKTFDHYCEYRKTPNGVILSPIQLGKWLV 488 (1614)
Q Consensus 409 l~~~l~~~~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~~~~l~~~~~~~~~~~~~~~g~~~~p~~~gk~~v 488 (1614)
...-++..+.|||+||||||||++++.++..- +.+++.+.... +..++-+..++-- +.++.-++....+|
T Consensus 461 ~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~-~~nFlsvkgpE------L~sk~vGeSEr~i---r~iF~kAR~~aP~I 530 (693)
T KOG0730|consen 461 ARFGISPPKGVLLYGPPGCGKTLLAKALANEA-GMNFLSVKGPE------LFSKYVGESERAI---REVFRKARQVAPCI 530 (693)
T ss_pred HHhcCCCCceEEEECCCCcchHHHHHHHhhhh-cCCeeeccCHH------HHHHhcCchHHHH---HHHHHHHhhcCCeE
Confidence 34456778999999999999999998887654 66677664321 1111111111100 00111111233499
Q ss_pred EEeccCCCCCccccCc--ccHHHHHHHHHHc-CceeeCCCCceEeecCeEEEEeecCCCCCCCCCCcccccc--ccc-EE
Q psy568 489 LFCDEINLPDMDKYAT--QRVISFLRQLIEQ-RGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLR--HVP-VI 562 (1614)
Q Consensus 489 lfiDdin~p~~d~~g~--q~~lelLrqlld~-~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r--~f~-~i 562 (1614)
+|+|||+......-|. +-.--+|.|++.. .|+-. ..++.+|||+|.|. .|+++++| ||- +|
T Consensus 531 iFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~--------~k~V~ViAATNRpd-----~ID~ALlRPGRlD~ii 597 (693)
T KOG0730|consen 531 IFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEA--------LKNVLVIAATNRPD-----MIDPALLRPGRLDRII 597 (693)
T ss_pred EehhhHHhHhhccCCCccchHHHHHHHHHHHcccccc--------cCcEEEEeccCChh-----hcCHHHcCCcccceeE
Confidence 9999999755444232 2233455555542 22221 15799999999997 79999999 777 89
Q ss_pred EecCCChhHHHHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHHHhhcCCCCCCccccChhhHHHHhhhhhc
Q psy568 563 YVDYPGETSLKQIYGTFSRAMLRLIPPLRGYADALTNAMVELYLASQEKFTQDMQPHYVYSPREMTRWVRGICE 636 (1614)
Q Consensus 563 ~i~~p~~~~l~~I~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~hY~F~lRdl~~v~~~i~~ 636 (1614)
+++.|+.+....|++..++.+- +.+.+ -...++.+| --||-+||..+||+.+.
T Consensus 598 yVplPD~~aR~~Ilk~~~kkmp-~~~~v--dl~~La~~T------------------~g~SGAel~~lCq~A~~ 650 (693)
T KOG0730|consen 598 YVPLPDLEARLEILKQCAKKMP-FSEDV--DLEELAQAT------------------EGYSGAEIVAVCQEAAL 650 (693)
T ss_pred eecCccHHHHHHHHHHHHhcCC-CCccc--cHHHHHHHh------------------ccCChHHHHHHHHHHHH
Confidence 9999999999999988877652 22221 112333332 12578899988887653
No 44
>KOG1051|consensus
Probab=99.03 E-value=1.1e-08 Score=130.53 Aligned_cols=160 Identities=20% Similarity=0.252 Sum_probs=104.3
Q ss_pred cchhhHHHHHHHHHh-cCCCEEEecCCCCchHHHHHHHHhcCC---------CCceEEEEcccCCCHHHHHhHhhcccce
Q psy568 400 LDTVRHESLLYTWLA-EHKPLVLCGPPGSGKTMTLLSALRALP---------DMEVVSLNFSSATTPELLLKTFDHYCEY 469 (1614)
Q Consensus 400 ~~t~r~~~ll~~~l~-~~~~vLL~Gp~GtGKT~lv~~~~~~l~---------~~~~~~i~~s~~t~~~~l~~~~~~~~~~ 469 (1614)
.+..|. ++.+.. .+.+-+|+|+||+|||+++..+++... +..++.+++........-.+-++..+..
T Consensus 194 eeirRv---i~iL~Rrtk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~aGa~~rge~E~rlk~ 270 (898)
T KOG1051|consen 194 EEIRRV---IEILSRKTKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLVAGAKRRGEFEERLKE 270 (898)
T ss_pred HHHHHH---HHHHhccCCCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhcccCcccchHHHHHHHH
Confidence 344444 444443 346889999999999999999997542 2456777776544332222222222211
Q ss_pred eecCCccccccccCCceEEEEeccCCCCCcc--ccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCC
Q psy568 470 RKTPNGVILSPIQLGKWLVLFCDEINLPDMD--KYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPG 547 (1614)
Q Consensus 470 ~~~~~g~~~~p~~~gk~~vlfiDdin~p~~d--~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g 547 (1614)
. +....- .|..+|+|+||+|+..-. .||......+|..++.+|+ +.+|||++...+.-
T Consensus 271 l----~k~v~~--~~~gvILfigelh~lvg~g~~~~~~d~~nlLkp~L~rg~--------------l~~IGatT~e~Y~k 330 (898)
T KOG1051|consen 271 L----LKEVES--GGGGVILFLGELHWLVGSGSNYGAIDAANLLKPLLARGG--------------LWCIGATTLETYRK 330 (898)
T ss_pred H----HHHHhc--CCCcEEEEecceeeeecCCCcchHHHHHHhhHHHHhcCC--------------eEEEecccHHHHHH
Confidence 1 000011 355699999999975333 2556678889999888765 55788776544223
Q ss_pred CCCCcccccccccEEEecCCChhHHHHHHHHHHHh
Q psy568 548 RKPLSHRFLRHVPVIYVDYPGETSLKQIYGTFSRA 582 (1614)
Q Consensus 548 ~~~l~~r~~r~f~~i~i~~p~~~~l~~I~~~~~~~ 582 (1614)
-.+-+|+|-|+|..+.++.|+.++...|+...-..
T Consensus 331 ~iekdPalErrw~l~~v~~pS~~~~~~iL~~l~~~ 365 (898)
T KOG1051|consen 331 CIEKDPALERRWQLVLVPIPSVENLSLILPGLSER 365 (898)
T ss_pred HHhhCcchhhCcceeEeccCcccchhhhhhhhhhh
Confidence 34558899999999999999999888887765444
No 45
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.01 E-value=2.9e-09 Score=121.58 Aligned_cols=133 Identities=23% Similarity=0.272 Sum_probs=96.3
Q ss_pred HHHHHhcC--CCEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCC-HHHHHhHhhcccceeecCCccccccccCCc
Q psy568 409 LYTWLAEH--KPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATT-PELLLKTFDHYCEYRKTPNGVILSPIQLGK 485 (1614)
Q Consensus 409 l~~~l~~~--~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~-~~~l~~~~~~~~~~~~~~~g~~~~p~~~gk 485 (1614)
+..++.+| .+.+|.||||||||++++-++... +..+..+ |+.++ ..+++..++..-..+ ..|+
T Consensus 39 lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~-~~~f~~~--sAv~~gvkdlr~i~e~a~~~~-----------~~gr 104 (436)
T COG2256 39 LRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTT-NAAFEAL--SAVTSGVKDLREIIEEARKNR-----------LLGR 104 (436)
T ss_pred HHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhh-CCceEEe--ccccccHHHHHHHHHHHHHHH-----------hcCC
Confidence 45567766 579999999999999887666654 5565544 44443 466777666422111 1378
Q ss_pred eEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCCCcccccccccEEEec
Q psy568 486 WLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLRHVPVIYVD 565 (1614)
Q Consensus 486 ~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r~f~~i~i~ 565 (1614)
+.|+||||||.-... -...|...++.|. +.+|||++-.. .+.+.+++++|+.++.+.
T Consensus 105 ~tiLflDEIHRfnK~------QQD~lLp~vE~G~--------------iilIGATTENP---sF~ln~ALlSR~~vf~lk 161 (436)
T COG2256 105 RTILFLDEIHRFNKA------QQDALLPHVENGT--------------IILIGATTENP---SFELNPALLSRARVFELK 161 (436)
T ss_pred ceEEEEehhhhcChh------hhhhhhhhhcCCe--------------EEEEeccCCCC---CeeecHHHhhhhheeeee
Confidence 899999999993332 3456777777653 66788775322 368999999999999999
Q ss_pred CCChhHHHHHHHH
Q psy568 566 YPGETSLKQIYGT 578 (1614)
Q Consensus 566 ~p~~~~l~~I~~~ 578 (1614)
+.+.+++..+.+.
T Consensus 162 ~L~~~di~~~l~r 174 (436)
T COG2256 162 PLSSEDIKKLLKR 174 (436)
T ss_pred cCCHHHHHHHHHH
Confidence 9999999999877
No 46
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=98.99 E-value=1.8e-09 Score=142.73 Aligned_cols=198 Identities=20% Similarity=0.225 Sum_probs=124.1
Q ss_pred CCCEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCCHHHHHhHhhcccceeecCCcccccccc--CCceEEEEecc
Q psy568 416 HKPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTPELLLKTFDHYCEYRKTPNGVILSPIQ--LGKWLVLFCDE 493 (1614)
Q Consensus 416 ~~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~~~~l~~~~~~~~~~~~~~~g~~~~p~~--~gk~~vlfiDd 493 (1614)
+.+++|+||||||||++++.++..+ +.+++.++++...+...+.+.-..... ...|.+..... .....|+||||
T Consensus 347 ~~~lll~GppG~GKT~lAk~iA~~l-~~~~~~i~~~~~~~~~~i~g~~~~~~g---~~~g~i~~~l~~~~~~~~villDE 422 (775)
T TIGR00763 347 GPILCLVGPPGVGKTSLGKSIAKAL-NRKFVRFSLGGVRDEAEIRGHRRTYVG---AMPGRIIQGLKKAKTKNPLFLLDE 422 (775)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh-cCCeEEEeCCCcccHHHHcCCCCceeC---CCCchHHHHHHHhCcCCCEEEEec
Confidence 4569999999999999999999887 678888888776666655443211110 00122211100 11224788999
Q ss_pred CCCCCccccCcccHHHHHHHHHHc---CceeeCCCCceEeecCeEEEEeecCCCCCCCCCCcccccccccEEEecCCChh
Q psy568 494 INLPDMDKYATQRVISFLRQLIEQ---RGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLRHVPVIYVDYPGET 570 (1614)
Q Consensus 494 in~p~~d~~g~q~~lelLrqlld~---~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r~f~~i~i~~p~~~ 570 (1614)
|+....+..| .+...|.+++|. +.|.+..........++.||+|+|+.. .+++.|++||.+|.++.|+.+
T Consensus 423 idk~~~~~~~--~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~TtN~~~-----~i~~~L~~R~~vi~~~~~~~~ 495 (775)
T TIGR00763 423 IDKIGSSFRG--DPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIATANSID-----TIPRPLLDRMEVIELSGYTEE 495 (775)
T ss_pred hhhcCCccCC--CHHHHHHHhcCHHhcCccccccCCceeccCCEEEEEecCCch-----hCCHHHhCCeeEEecCCCCHH
Confidence 9987665322 355677777774 334443222334456789999999864 699999999999999999999
Q ss_pred HHHHHHHHHHHhh-hh---cchhhhhhHHHHHHHHHHHHHHHHhhcCCCCCCccccChhhHHHHhhhhhcc
Q psy568 571 SLKQIYGTFSRAM-LR---LIPPLRGYADALTNAMVELYLASQEKFTQDMQPHYVYSPREMTRWVRGICEA 637 (1614)
Q Consensus 571 ~l~~I~~~~~~~~-~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~hY~F~lRdl~~v~~~i~~~ 637 (1614)
+...|+..++... .. ..+.-..+.+....+++.-| .-..+.|+|.|.++.+++.
T Consensus 496 e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~-------------~~e~g~R~l~r~i~~~~~~ 553 (775)
T TIGR00763 496 EKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYY-------------TREAGVRNLERQIEKICRK 553 (775)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhc-------------ChhcCChHHHHHHHHHHHH
Confidence 9999987765321 11 11110112222233333211 1234889999988887753
No 47
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=1.4e-09 Score=136.74 Aligned_cols=160 Identities=18% Similarity=0.257 Sum_probs=129.6
Q ss_pred CEEEecCCCCchHHHHHHHHhcCCC--CceEEEEcccCCCHHHHHhHhhcccceeecC-CccccccccCCceEEEEeccC
Q psy568 418 PLVLCGPPGSGKTMTLLSALRALPD--MEVVSLNFSSATTPELLLKTFDHYCEYRKTP-NGVILSPIQLGKWLVLFCDEI 494 (1614)
Q Consensus 418 ~vLL~Gp~GtGKT~lv~~~~~~l~~--~~~~~i~~s~~t~~~~l~~~~~~~~~~~~~~-~g~~~~p~~~gk~~vlfiDdi 494 (1614)
.+|+.||||+|||.+++.++..+-+ ..++++++|.......+-+.+.+...+.... .|.++.+.+.....|+++|||
T Consensus 523 sFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEI 602 (786)
T COG0542 523 SFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEI 602 (786)
T ss_pred EEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHHHhCCCCCCceeccccchhHhhhcCCCeEEEechh
Confidence 4699999999999999999998854 5689999999998888888887665554432 467777777667889999999
Q ss_pred CCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCC------CC-----------------CCCC
Q psy568 495 NLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTD------PG-----------------RKPL 551 (1614)
Q Consensus 495 n~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~------~g-----------------~~~l 551 (1614)
.. +.+.++.+|.|++|.|.+.|. .+..+...|+.+|.|+|-... .+ ++.+
T Consensus 603 EK------AHpdV~nilLQVlDdGrLTD~-~Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F 675 (786)
T COG0542 603 EK------AHPDVFNLLLQVLDDGRLTDG-QGRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHF 675 (786)
T ss_pred hh------cCHHHHHHHHHHhcCCeeecC-CCCEEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhC
Confidence 99 555699999999999999884 567888899999999997531 00 2456
Q ss_pred ccccccccc-EEEecCCChhHHHHHHHHHHHhhh
Q psy568 552 SHRFLRHVP-VIYVDYPGETSLKQIYGTFSRAML 584 (1614)
Q Consensus 552 ~~r~~r~f~-~i~i~~p~~~~l~~I~~~~~~~~~ 584 (1614)
+|.|++|+. +|.+.+.+.+.+.+|....+..+.
T Consensus 676 ~PEFLNRid~II~F~~L~~~~l~~Iv~~~L~~l~ 709 (786)
T COG0542 676 RPEFLNRIDEIIPFNPLSKEVLERIVDLQLNRLA 709 (786)
T ss_pred CHHHHhhcccEEeccCCCHHHHHHHHHHHHHHHH
Confidence 788899998 899999999999999887766543
No 48
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.97 E-value=2.4e-09 Score=114.61 Aligned_cols=124 Identities=30% Similarity=0.291 Sum_probs=72.2
Q ss_pred HHHHHHHHHhcCCCEEEecCCCCchHHHHHHHHhcCCCCceE-EEEcc------------------------cCCCHHHH
Q psy568 405 HESLLYTWLAEHKPLVLCGPPGSGKTMTLLSALRALPDMEVV-SLNFS------------------------SATTPELL 459 (1614)
Q Consensus 405 ~~~ll~~~l~~~~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~-~i~~s------------------------~~t~~~~l 459 (1614)
....+..+...++++|++||||||||++++.+..-++..... .+..+ ..++...+
T Consensus 11 aKrAL~iAAaG~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~~~~~~~~~~~~Pfr~phhs~s~~~l 90 (206)
T PF01078_consen 11 AKRALEIAAAGGHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAGLGPDEGLIRQRPFRAPHHSASEAAL 90 (206)
T ss_dssp HHHHHHHHHHCC--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT---S---EEEE---EEEE-TT--HHHH
T ss_pred HHHHHHHHHcCCCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhccccccccCCCCCceecCCCcccCCCCcCHHHH
Confidence 344566677789999999999999999999988776542211 11111 11222222
Q ss_pred HhHhhcccceeecCCccccccccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeC-CCCceEeecCeEEEE
Q psy568 460 LKTFDHYCEYRKTPNGVILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRP-ADKQWVSLERIQCVG 538 (1614)
Q Consensus 460 ~~~~~~~~~~~~~~~g~~~~p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~-~~~~~~~~~~~~~ia 538 (1614)
.| +-...+ .|.+..+ .+.|+|+||+|. -...+++.||+-++.|..... .+.......+|.+||
T Consensus 91 iG---gg~~~~---PGeislA----h~GVLflDE~~e------f~~~vld~Lr~ple~g~v~i~R~~~~~~~Pa~f~lv~ 154 (206)
T PF01078_consen 91 IG---GGRPPR---PGEISLA----HRGVLFLDELNE------FDRSVLDALRQPLEDGEVTISRAGGSVTYPARFLLVA 154 (206)
T ss_dssp HE---EGGGEE---E-CGGGG----TTSEEEECETTT------S-HHHHHHHHHHHHHSBEEEEETTEEEEEB--EEEEE
T ss_pred hC---CCcCCC---cCHHHHh----cCCEEEechhhh------cCHHHHHHHHHHHHCCeEEEEECCceEEEecccEEEE
Confidence 22 111111 1333222 457999999999 667799999999999987664 344555556999999
Q ss_pred eecCCC
Q psy568 539 ACNPPT 544 (1614)
Q Consensus 539 a~n~~~ 544 (1614)
||||-.
T Consensus 155 a~NPcp 160 (206)
T PF01078_consen 155 AMNPCP 160 (206)
T ss_dssp EE-S--
T ss_pred Eecccc
Confidence 999964
No 49
>KOG0741|consensus
Probab=98.97 E-value=7.6e-09 Score=120.22 Aligned_cols=152 Identities=24% Similarity=0.310 Sum_probs=93.4
Q ss_pred HhcCCCEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccC------CCHHHHHhHhhc-ccceeecCCccccccccCCc
Q psy568 413 LAEHKPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSA------TTPELLLKTFDH-YCEYRKTPNGVILSPIQLGK 485 (1614)
Q Consensus 413 l~~~~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~------t~~~~l~~~~~~-~~~~~~~~~g~~~~p~~~gk 485 (1614)
+.+=+.+||+||||||||.+++++-..+.....-.+|...- .+-+.+.+.|.. .-++|+ .| + .+|-
T Consensus 253 i~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~KYVGeSE~NvR~LFaDAEeE~r~--~g----~-~SgL 325 (744)
T KOG0741|consen 253 IKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNKYVGESEENVRKLFADAEEEQRR--LG----A-NSGL 325 (744)
T ss_pred ccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHHHhhcccHHHHHHHHHhHHHHHHh--hC----c-cCCc
Confidence 44557899999999999999999988875555444443321 233455555432 223333 12 2 1344
Q ss_pred eEEEEeccCCCCCccc---cC-cccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCCCcccccc--cc
Q psy568 486 WLVLFCDEINLPDMDK---YA-TQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLR--HV 559 (1614)
Q Consensus 486 ~~vlfiDdin~p~~d~---~g-~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r--~f 559 (1614)
.+| .+|||+-.=..+ -| +.---.++.||+..- ...-.+.|+.+||-+|... -++++|+| ||
T Consensus 326 HII-IFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKm-------DGVeqLNNILVIGMTNR~D-----lIDEALLRPGRl 392 (744)
T KOG0741|consen 326 HII-IFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKM-------DGVEQLNNILVIGMTNRKD-----LIDEALLRPGRL 392 (744)
T ss_pred eEE-EehhhHHHHHhcCCCCCCCCccHHHHHHHHHhc-------ccHHhhhcEEEEeccCchh-----hHHHHhcCCCce
Confidence 444 459999421100 01 111123556666541 1223456899999998765 68999998 66
Q ss_pred cE-EEecCCChhHHHHHHHHHHHhhh
Q psy568 560 PV-IYVDYPGETSLKQIYGTFSRAML 584 (1614)
Q Consensus 560 ~~-i~i~~p~~~~l~~I~~~~~~~~~ 584 (1614)
-+ +.+..|++....+||+.....+.
T Consensus 393 EVqmEIsLPDE~gRlQIl~IHT~rMr 418 (744)
T KOG0741|consen 393 EVQMEISLPDEKGRLQILKIHTKRMR 418 (744)
T ss_pred EEEEEEeCCCccCceEEEEhhhhhhh
Confidence 64 67889999998888877666554
No 50
>PHA02244 ATPase-like protein
Probab=98.92 E-value=5.3e-09 Score=121.18 Aligned_cols=146 Identities=21% Similarity=0.301 Sum_probs=112.8
Q ss_pred chHHHHHHHHHHHHHhccEEEEecCCCCChhhHHHHHHHHHHHhhcCCceEEEeCCCCCCcCcccccccCCCCccccchH
Q psy568 27 GPWMEKVLQLYQISNLNHGLMMVGPSGSGKSTAWKVLLKALERYEGVEGVAHIIDPKAISKEALYGVLDPNTREWTDGLF 106 (1614)
Q Consensus 27 ~~~~~K~~qL~e~~~~r~gVmlvG~~gsGKTt~~~~L~~al~~~~~~~~~~~~inPkais~~eLyG~~d~~t~eW~DGvl 106 (1614)
+.|......+-..+..+..|+|.||||||||++.+.++..++ . ..+.+| ..++..+|.|..+.. +.|.||.|
T Consensus 103 p~~~~~~~ri~r~l~~~~PVLL~GppGtGKTtLA~aLA~~lg----~--pfv~In-~l~d~~~L~G~i~~~-g~~~dgpL 174 (383)
T PHA02244 103 PTFHYETADIAKIVNANIPVFLKGGAGSGKNHIAEQIAEALD----L--DFYFMN-AIMDEFELKGFIDAN-GKFHETPF 174 (383)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHhC----C--CEEEEe-cChHHHhhccccccc-ccccchHH
Confidence 334455556677888999999999999999999999999853 2 244555 233455678876654 58999999
Q ss_pred HHHHHHHHhhhcCCCCCceEEEEcc--CCChhhhhhhhhhhcCCCccccCCCceeeCCCCceEEEEeccc----------
Q psy568 107 THILRRIIDNVRGEISKRQWIIFDG--DVDPEWVENLNSVLDDNKLLTLPNGERLSLPPNIRIMFEVQDL---------- 174 (1614)
Q Consensus 107 s~i~r~~~~~~~~~~~~~~WivfDG--~vd~~WiE~lnsvLDdnk~L~L~nGeri~l~~~~~~iFEv~dL---------- 174 (1614)
...+++. .|+++|. -..+.-...||++||+. .+.+. |+++..++++++|+=.+..
T Consensus 175 l~A~~~G-----------gvLiLDEId~a~p~vq~~L~~lLd~r-~l~l~-g~~i~~h~~FRlIATsN~~~~G~~~~y~G 241 (383)
T PHA02244 175 YEAFKKG-----------GLFFIDEIDASIPEALIIINSAIANK-FFDFA-DERVTAHEDFRVISAGNTLGKGADHIYVA 241 (383)
T ss_pred HHHhhcC-----------CEEEEeCcCcCCHHHHHHHHHHhccC-eEEec-CcEEecCCCEEEEEeeCCCccCcccccCC
Confidence 8887553 6999995 45688889999999974 66665 7889999999999866652
Q ss_pred -cccCccccccceeEEecCc
Q psy568 175 -KYATLATVSRCGMIWFSED 193 (1614)
Q Consensus 175 -~~ASPAtVSRcgmv~~~~~ 193 (1614)
...+||+++|+..|+++-.
T Consensus 242 ~k~L~~AllDRFv~I~~dyp 261 (383)
T PHA02244 242 RNKIDGATLDRFAPIEFDYD 261 (383)
T ss_pred CcccCHHHHhhcEEeeCCCC
Confidence 5568999999999988764
No 51
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=98.91 E-value=4.2e-08 Score=113.01 Aligned_cols=138 Identities=21% Similarity=0.295 Sum_probs=104.2
Q ss_pred HHHHHHHhccEEEEecCCCCChhhHHHHHHHHHHHhhcCCceEEEeCCCCCCcCccccccc----CCC--CccccchHHH
Q psy568 35 QLYQISNLNHGLMMVGPSGSGKSTAWKVLLKALERYEGVEGVAHIIDPKAISKEALYGVLD----PNT--REWTDGLFTH 108 (1614)
Q Consensus 35 qL~e~~~~r~gVmlvG~~gsGKTt~~~~L~~al~~~~~~~~~~~~inPkais~~eLyG~~d----~~t--~eW~DGvls~ 108 (1614)
.+--.+..+..|+|.||||||||++.+.|++.++ .+.....+++. ++..+|.|..- ... .+|.||.|+.
T Consensus 56 ~vl~~l~~~~~ilL~G~pGtGKTtla~~lA~~l~----~~~~rV~~~~~-l~~~DliG~~~~~l~~g~~~~~f~~GpL~~ 130 (327)
T TIGR01650 56 AICAGFAYDRRVMVQGYHGTGKSTHIEQIAARLN----WPCVRVNLDSH-VSRIDLVGKDAIVLKDGKQITEFRDGILPW 130 (327)
T ss_pred HHHHHHhcCCcEEEEeCCCChHHHHHHHHHHHHC----CCeEEEEecCC-CChhhcCCCceeeccCCcceeEEecCcchh
Confidence 3445666788899999999999999999999985 23332233333 77888999732 111 3899999999
Q ss_pred HHHHHHhhhcCCCCCceEEEEcc--CCChhhhhhhhhhhcCCCccccC-CCceeeCCCCceEEEEecccc----------
Q psy568 109 ILRRIIDNVRGEISKRQWIIFDG--DVDPEWVENLNSVLDDNKLLTLP-NGERLSLPPNIRIMFEVQDLK---------- 175 (1614)
Q Consensus 109 i~r~~~~~~~~~~~~~~WivfDG--~vd~~WiE~lnsvLDdnk~L~L~-nGeri~l~~~~~~iFEv~dL~---------- 175 (1614)
+++. ..|++||. -.+|.-...||++||+.+.|+++ .|+.|..+|++++|.-.....
T Consensus 131 A~~~-----------g~illlDEin~a~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~G 199 (327)
T TIGR01650 131 ALQH-----------NVALCFDEYDAGRPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHG 199 (327)
T ss_pred HHhC-----------CeEEEechhhccCHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceee
Confidence 8765 27999996 45788889999999998899987 578888888999887665543
Q ss_pred --ccCccccccceeE
Q psy568 176 --YATLATVSRCGMI 188 (1614)
Q Consensus 176 --~ASPAtVSRcgmv 188 (1614)
...+|...|+.++
T Consensus 200 t~~l~~A~lDRF~i~ 214 (327)
T TIGR01650 200 TQQINQAQMDRWSIV 214 (327)
T ss_pred eecCCHHHHhheeeE
Confidence 1257888888765
No 52
>CHL00195 ycf46 Ycf46; Provisional
Probab=98.91 E-value=2.3e-09 Score=132.02 Aligned_cols=137 Identities=17% Similarity=0.271 Sum_probs=92.6
Q ss_pred hcCCCEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCC------HHHHHhHhhcccceeecCCccccccccCCceE
Q psy568 414 AEHKPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATT------PELLLKTFDHYCEYRKTPNGVILSPIQLGKWL 487 (1614)
Q Consensus 414 ~~~~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~------~~~l~~~~~~~~~~~~~~~g~~~~p~~~gk~~ 487 (1614)
...+++||+||||||||.+++.++..+ +.+++.++++...+ ...+...+. -++...++
T Consensus 257 ~~pkGILL~GPpGTGKTllAkaiA~e~-~~~~~~l~~~~l~~~~vGese~~l~~~f~---------------~A~~~~P~ 320 (489)
T CHL00195 257 PTPRGLLLVGIQGTGKSLTAKAIANDW-QLPLLRLDVGKLFGGIVGESESRMRQMIR---------------IAEALSPC 320 (489)
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHh-CCCEEEEEhHHhcccccChHHHHHHHHHH---------------HHHhcCCc
Confidence 345789999999999999999998877 77888887753221 122222221 01123459
Q ss_pred EEEeccCCCCCc--cccC----cccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCCCcccccc--cc
Q psy568 488 VLFCDEINLPDM--DKYA----TQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLR--HV 559 (1614)
Q Consensus 488 vlfiDdin~p~~--d~~g----~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r--~f 559 (1614)
|+|||||+..-. +..+ +..++..+-.+++.. . .++.+|||+|.+. .+|+.++| ||
T Consensus 321 IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~------~------~~V~vIaTTN~~~-----~Ld~allR~GRF 383 (489)
T CHL00195 321 ILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEK------K------SPVFVVATANNID-----LLPLEILRKGRF 383 (489)
T ss_pred EEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcC------C------CceEEEEecCChh-----hCCHHHhCCCcC
Confidence 999999995322 2111 122333333333321 1 3578899999886 79999998 88
Q ss_pred c-EEEecCCChhHHHHHHHHHHHhh
Q psy568 560 P-VIYVDYPGETSLKQIYGTFSRAM 583 (1614)
Q Consensus 560 ~-~i~i~~p~~~~l~~I~~~~~~~~ 583 (1614)
. +++++.|+.++...||+.++...
T Consensus 384 D~~i~v~lP~~~eR~~Il~~~l~~~ 408 (489)
T CHL00195 384 DEIFFLDLPSLEEREKIFKIHLQKF 408 (489)
T ss_pred CeEEEeCCcCHHHHHHHHHHHHhhc
Confidence 7 78999999999999998887653
No 53
>KOG0734|consensus
Probab=98.91 E-value=1.4e-09 Score=126.33 Aligned_cols=145 Identities=22% Similarity=0.284 Sum_probs=94.9
Q ss_pred CCCEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCCHHHHHhHhhcccceeecCCccccccccCCceEEEEeccCC
Q psy568 416 HKPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTPELLLKTFDHYCEYRKTPNGVILSPIQLGKWLVLFCDEIN 495 (1614)
Q Consensus 416 ~~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~~~~l~~~~~~~~~~~~~~~g~~~~p~~~gk~~vlfiDdin 495 (1614)
.+.|||+||||||||.+++.++..- +.+++....|. +-..+-+.-.+|. .-++.+++...+||||||||+
T Consensus 337 PKGVLLvGPPGTGKTlLARAvAGEA-~VPFF~~sGSE------FdEm~VGvGArRV---RdLF~aAk~~APcIIFIDEiD 406 (752)
T KOG0734|consen 337 PKGVLLVGPPGTGKTLLARAVAGEA-GVPFFYASGSE------FDEMFVGVGARRV---RDLFAAAKARAPCIIFIDEID 406 (752)
T ss_pred CCceEEeCCCCCchhHHHHHhhccc-CCCeEeccccc------hhhhhhcccHHHH---HHHHHHHHhcCCeEEEEechh
Confidence 5899999999999999998888654 56665443332 1122222111221 223444445667999999999
Q ss_pred CCCccc--cCcccHHHHHHHHHH-cCceeeCCCCceEeecCeEEEEeecCCCCCCCCCCcccccc--ccc-EEEecCCCh
Q psy568 496 LPDMDK--YATQRVISFLRQLIE-QRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLR--HVP-VIYVDYPGE 569 (1614)
Q Consensus 496 ~p~~d~--~g~q~~lelLrqlld-~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r--~f~-~i~i~~p~~ 569 (1614)
-...-. +...-.-..|.|++. -.||-.. +.+.+|||+|.|. .|+++|+| ||. .|.+|.|+.
T Consensus 407 avG~kR~~~~~~y~kqTlNQLLvEmDGF~qN--------eGiIvigATNfpe-----~LD~AL~RPGRFD~~v~Vp~PDv 473 (752)
T KOG0734|consen 407 AVGGKRNPSDQHYAKQTLNQLLVEMDGFKQN--------EGIIVIGATNFPE-----ALDKALTRPGRFDRHVTVPLPDV 473 (752)
T ss_pred hhcccCCccHHHHHHHHHHHHHHHhcCcCcC--------CceEEEeccCChh-----hhhHHhcCCCccceeEecCCCCc
Confidence 642221 001123334555553 3444432 4789999999997 68998887 777 678999999
Q ss_pred hHHHHHHHHHHHhh
Q psy568 570 TSLKQIYGTFSRAM 583 (1614)
Q Consensus 570 ~~l~~I~~~~~~~~ 583 (1614)
.-...|+..++...
T Consensus 474 ~GR~eIL~~yl~ki 487 (752)
T KOG0734|consen 474 RGRTEILKLYLSKI 487 (752)
T ss_pred ccHHHHHHHHHhcC
Confidence 99999988877654
No 54
>KOG0727|consensus
Probab=98.90 E-value=2.8e-09 Score=112.51 Aligned_cols=150 Identities=20% Similarity=0.289 Sum_probs=98.9
Q ss_pred HHhcCCCEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCCHHHHHhHhhcccceeecCCccccccccCCceEEEEe
Q psy568 412 WLAEHKPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTPELLLKTFDHYCEYRKTPNGVILSPIQLGKWLVLFC 491 (1614)
Q Consensus 412 ~l~~~~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~~~~l~~~~~~~~~~~~~~~g~~~~p~~~gk~~vlfi 491 (1614)
-+...+.||++||||||||++++..+... .-.+++++.| +-+++.+..--.+.+ . +++-++.+.+.|+||
T Consensus 185 gidpprgvllygppg~gktml~kava~~t-~a~firvvgs-----efvqkylgegprmvr---d-vfrlakenapsiifi 254 (408)
T KOG0727|consen 185 GIDPPRGVLLYGPPGTGKTMLAKAVANHT-TAAFIRVVGS-----EFVQKYLGEGPRMVR---D-VFRLAKENAPSIIFI 254 (408)
T ss_pred CCCCCcceEEeCCCCCcHHHHHHHHhhcc-chheeeeccH-----HHHHHHhccCcHHHH---H-HHHHHhccCCcEEEe
Confidence 35567899999999999999999888754 4556776654 444444432111110 1 122233566799999
Q ss_pred ccCCCCCccccCcc-----cHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCCCcccccc---cccEEE
Q psy568 492 DEINLPDMDKYATQ-----RVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLR---HVPVIY 563 (1614)
Q Consensus 492 Ddin~p~~d~~g~q-----~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r---~f~~i~ 563 (1614)
||++..+...|.+| .+..+|-.++....=||.. .|+.+|.|+|... .|+|+++| .-+-|.
T Consensus 255 deidaiatkrfdaqtgadrevqril~ellnqmdgfdq~-------~nvkvimatnrad-----tldpallrpgrldrkie 322 (408)
T KOG0727|consen 255 DEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQT-------TNVKVIMATNRAD-----TLDPALLRPGRLDRKIE 322 (408)
T ss_pred ehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcc-------cceEEEEecCccc-----ccCHhhcCCcccccccc
Confidence 99998766555443 2322333333322223332 3788999999876 68998886 344788
Q ss_pred ecCCChhHHHHHHHHHHHhh
Q psy568 564 VDYPGETSLKQIYGTFSRAM 583 (1614)
Q Consensus 564 i~~p~~~~l~~I~~~~~~~~ 583 (1614)
+|.|+..+-+-+|+++...+
T Consensus 323 fplpdrrqkrlvf~titskm 342 (408)
T KOG0727|consen 323 FPLPDRRQKRLVFSTITSKM 342 (408)
T ss_pred CCCCchhhhhhhHHhhhhcc
Confidence 99999999999999988765
No 55
>KOG0738|consensus
Probab=98.88 E-value=6.6e-09 Score=116.97 Aligned_cols=146 Identities=23% Similarity=0.356 Sum_probs=96.9
Q ss_pred HHHHHHhcCCCEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCCH-------HHHHhHhhcccceeecCCcccccc
Q psy568 408 LLYTWLAEHKPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTP-------ELLLKTFDHYCEYRKTPNGVILSP 480 (1614)
Q Consensus 408 ll~~~l~~~~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~~-------~~l~~~~~~~~~~~~~~~g~~~~p 480 (1614)
+++-+...-+.||++||||||||.|++.++..- + ..++|.|+.|-. +.+.+.+- +. .+++.|
T Consensus 237 ~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc-~--tTFFNVSsstltSKwRGeSEKlvRlLF---em-----ARfyAP 305 (491)
T KOG0738|consen 237 FFKGIRRPWKGVLMVGPPGTGKTLLAKAVATEC-G--TTFFNVSSSTLTSKWRGESEKLVRLLF---EM-----ARFYAP 305 (491)
T ss_pred HHhhcccccceeeeeCCCCCcHHHHHHHHHHhh-c--CeEEEechhhhhhhhccchHHHHHHHH---HH-----HHHhCC
Confidence 445556677999999999999999999888755 3 445666655533 33333321 11 345566
Q ss_pred ccCCceEEEEeccCCCCCccc------cCcccH-HHHHHHHHHc-CceeeCCCCceEeecCeEEEEeecCCCCCCCCCCc
Q psy568 481 IQLGKWLVLFCDEINLPDMDK------YATQRV-ISFLRQLIEQ-RGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLS 552 (1614)
Q Consensus 481 ~~~gk~~vlfiDdin~p~~d~------~g~q~~-lelLrqlld~-~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~ 552 (1614)
.+||||||+..-... .++..+ -|+|-|+ |. ++-.. .-.-+.++||+|.|- +|+
T Consensus 306 ------StIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQm-DG~~~t~e-------~~k~VmVLAATN~PW-----diD 366 (491)
T KOG0738|consen 306 ------STIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQM-DGVQGTLE-------NSKVVMVLAATNFPW-----DID 366 (491)
T ss_pred ------ceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHh-hccccccc-------cceeEEEEeccCCCc-----chH
Confidence 679999999642222 112223 3455444 42 22111 112377889999998 799
Q ss_pred cccccccc-EEEecCCChhHHHHHHHHHHHhh
Q psy568 553 HRFLRHVP-VIYVDYPGETSLKQIYGTFSRAM 583 (1614)
Q Consensus 553 ~r~~r~f~-~i~i~~p~~~~l~~I~~~~~~~~ 583 (1614)
.+|+|||- .|+||.|+.+....+++..++..
T Consensus 367 EAlrRRlEKRIyIPLP~~~~R~~Li~~~l~~~ 398 (491)
T KOG0738|consen 367 EALRRRLEKRIYIPLPDAEARSALIKILLRSV 398 (491)
T ss_pred HHHHHHHhhheeeeCCCHHHHHHHHHHhhccc
Confidence 99999999 89999999999998877666543
No 56
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=98.86 E-value=1.3e-08 Score=117.42 Aligned_cols=146 Identities=19% Similarity=0.282 Sum_probs=107.3
Q ss_pred HHHHHHHHHHHhccEEEEecCCCCChhhHHHHHHHHHHHhhcCCceEEEeCCCCCCcCcccccccC--------------
Q psy568 31 EKVLQLYQISNLNHGLMMVGPSGSGKSTAWKVLLKALERYEGVEGVAHIIDPKAISKEALYGVLDP-------------- 96 (1614)
Q Consensus 31 ~K~~qL~e~~~~r~gVmlvG~~gsGKTt~~~~L~~al~~~~~~~~~~~~inPkais~~eLyG~~d~-------------- 96 (1614)
.-.-++...+..+..|+|.||||||||++.+.+++.+ +.+......++ .++..+|+|.+.+
T Consensus 9 ~l~~~~l~~l~~g~~vLL~G~~GtGKT~lA~~la~~l----g~~~~~i~~~~-~~~~~dllg~~~~~~~~~~~~~~~~~~ 83 (262)
T TIGR02640 9 RVTSRALRYLKSGYPVHLRGPAGTGKTTLAMHVARKR----DRPVMLINGDA-ELTTSDLVGSYAGYTRKKVHDQFIHNV 83 (262)
T ss_pred HHHHHHHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHh----CCCEEEEeCCc-cCCHHHHhhhhcccchhhHHHHHHHHh
Confidence 3334455667778899999999999999999999864 33433333444 4566777776532
Q ss_pred ------CCCccccchHHHHHHHHHhhhcCCCCCceEEEEcc--CCChhhhhhhhhhhcCCCccccCC----CceeeCCCC
Q psy568 97 ------NTREWTDGLFTHILRRIIDNVRGEISKRQWIIFDG--DVDPEWVENLNSVLDDNKLLTLPN----GERLSLPPN 164 (1614)
Q Consensus 97 ------~t~eW~DGvls~i~r~~~~~~~~~~~~~~WivfDG--~vd~~WiE~lnsvLDdnk~L~L~n----Geri~l~~~ 164 (1614)
...+|.||.+..++++ ..|+++|. -.++..-..|+++|++ +.+++++ |+.+..+++
T Consensus 84 ~~~~~~~~~~~~~g~l~~A~~~-----------g~~lllDEi~r~~~~~q~~Ll~~Le~-~~~~i~~~~~~~~~i~~~~~ 151 (262)
T TIGR02640 84 VKLEDIVRQNWVDNRLTLAVRE-----------GFTLVYDEFTRSKPETNNVLLSVFEE-GVLELPGKRGTSRYVDVHPE 151 (262)
T ss_pred hhhhcccceeecCchHHHHHHc-----------CCEEEEcchhhCCHHHHHHHHHHhcC-CeEEccCCCCCCceEecCCC
Confidence 1227999988877754 26999997 4788999999999997 6778875 467889999
Q ss_pred ceEEEEecccc-----ccCccccccceeEEecCc
Q psy568 165 IRIMFEVQDLK-----YATLATVSRCGMIWFSED 193 (1614)
Q Consensus 165 ~~~iFEv~dL~-----~ASPAtVSRcgmv~~~~~ 193 (1614)
+++|+-.+.-. ..++|...||..++++.-
T Consensus 152 frvIaTsN~~~~~g~~~l~~aL~~R~~~i~i~~P 185 (262)
T TIGR02640 152 FRVIFTSNPVEYAGVHETQDALLDRLITIFMDYP 185 (262)
T ss_pred CEEEEeeCCccccceecccHHHHhhcEEEECCCC
Confidence 99888665432 337889999988887653
No 57
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=98.86 E-value=1.2e-08 Score=133.04 Aligned_cols=198 Identities=18% Similarity=0.183 Sum_probs=127.1
Q ss_pred cCCCEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCCHHHHHhHhhcccceeecCCccccccccC-C-ceEEEEec
Q psy568 415 EHKPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTPELLLKTFDHYCEYRKTPNGVILSPIQL-G-KWLVLFCD 492 (1614)
Q Consensus 415 ~~~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~~~~l~~~~~~~~~~~~~~~g~~~~p~~~-g-k~~vlfiD 492 (1614)
.|..++|+||||||||++++.++..+ +.++..++++...+...+.+.-....... .|.+...... | ...|+|+|
T Consensus 348 ~g~~i~l~GppG~GKTtl~~~ia~~l-~~~~~~i~~~~~~d~~~i~g~~~~~~g~~---~G~~~~~l~~~~~~~~villD 423 (784)
T PRK10787 348 KGPILCLVGPPGVGKTSLGQSIAKAT-GRKYVRMALGGVRDEAEIRGHRRTYIGSM---PGKLIQKMAKVGVKNPLFLLD 423 (784)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh-CCCEEEEEcCCCCCHHHhccchhccCCCC---CcHHHHHHHhcCCCCCEEEEE
Confidence 35679999999999999999888776 67788899888777766655432211111 1332211111 1 23478899
Q ss_pred cCCCCCccccCcccHHHHHHHHHHcCc---eeeCCCCceEeecCeEEEEeecCCCCCCCCCCcccccccccEEEecCCCh
Q psy568 493 EINLPDMDKYATQRVISFLRQLIEQRG---FYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLRHVPVIYVDYPGE 569 (1614)
Q Consensus 493 din~p~~d~~g~q~~lelLrqlld~~~---~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r~f~~i~i~~p~~ 569 (1614)
|++....+. ...+...|.+++|.+. |.|..-..-....++.||||+|.- .+|++|++||.+|.+..++.
T Consensus 424 Eidk~~~~~--~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~------~i~~aLl~R~~ii~~~~~t~ 495 (784)
T PRK10787 424 EIDKMSSDM--RGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSM------NIPAPLLDRMEVIRLSGYTE 495 (784)
T ss_pred Chhhccccc--CCCHHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCC------CCCHHHhcceeeeecCCCCH
Confidence 999876653 2246677888888643 333222223455789999988753 49999999999999999999
Q ss_pred hHHHHHHHHHHHh-hhh---cchhhhhhHHHHHHHHHHHHHHHHhhcCCCCCCccccChhhHHHHhhhhhcc
Q psy568 570 TSLKQIYGTFSRA-MLR---LIPPLRGYADALTNAMVELYLASQEKFTQDMQPHYVYSPREMTRWVRGICEA 637 (1614)
Q Consensus 570 ~~l~~I~~~~~~~-~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~hY~F~lRdl~~v~~~i~~~ 637 (1614)
+++..|...++.. ... ....-..+.+..+..+++- + .-.++.|.|.|.++.+++.
T Consensus 496 eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~-------y------t~e~GaR~LeR~I~~i~r~ 554 (784)
T PRK10787 496 DEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRY-------Y------TREAGVRSLEREISKLCRK 554 (784)
T ss_pred HHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHh-------C------CcccCCcHHHHHHHHHHHH
Confidence 9999998877632 111 1111112223333333321 1 1246889999999987753
No 58
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=98.84 E-value=8.5e-09 Score=126.53 Aligned_cols=147 Identities=22% Similarity=0.364 Sum_probs=89.7
Q ss_pred HhcCCCEEEecCCCCchHHHHHHHHhcCCCC-------ceEEEEcccCC--------CHHHHHhHhhcccceeecCCccc
Q psy568 413 LAEHKPLVLCGPPGSGKTMTLLSALRALPDM-------EVVSLNFSSAT--------TPELLLKTFDHYCEYRKTPNGVI 477 (1614)
Q Consensus 413 l~~~~~vLL~Gp~GtGKT~lv~~~~~~l~~~-------~~~~i~~s~~t--------~~~~l~~~~~~~~~~~~~~~g~~ 477 (1614)
+...+++||+||||||||++++.++..+... ....++++... +...+...+....
T Consensus 213 l~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~eLl~kyvGete~~ir~iF~~Ar---------- 282 (512)
T TIGR03689 213 LKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGPELLNKYVGETERQIRLIFQRAR---------- 282 (512)
T ss_pred CCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccchhhcccccchHHHHHHHHHHHHH----------
Confidence 3456789999999999999999999877322 22333433211 0111111111100
Q ss_pred cccccCCceEEEEeccCCCCCccc-cC-cccH-HHHHHHHHHc-CceeeCCCCceEeecCeEEEEeecCCCCCCCCCCcc
Q psy568 478 LSPIQLGKWLVLFCDEINLPDMDK-YA-TQRV-ISFLRQLIEQ-RGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSH 553 (1614)
Q Consensus 478 ~~p~~~gk~~vlfiDdin~p~~d~-~g-~q~~-lelLrqlld~-~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~ 553 (1614)
.-...|+++|+||||++...... .| +... -.++.+++.. .|+. ...++.+|+|+|.+. .|++
T Consensus 283 -~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~--------~~~~ViVI~ATN~~d-----~LDp 348 (512)
T TIGR03689 283 -EKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVE--------SLDNVIVIGASNRED-----MIDP 348 (512)
T ss_pred -HHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccc--------cCCceEEEeccCChh-----hCCH
Confidence 00113567999999999643221 11 1111 1122333321 1221 124688999999986 6999
Q ss_pred cccc--ccc-EEEecCCChhHHHHHHHHHHHhh
Q psy568 554 RFLR--HVP-VIYVDYPGETSLKQIYGTFSRAM 583 (1614)
Q Consensus 554 r~~r--~f~-~i~i~~p~~~~l~~I~~~~~~~~ 583 (1614)
+++| ||. .|.++.|+.++...||+.++...
T Consensus 349 ALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~ 381 (512)
T TIGR03689 349 AILRPGRLDVKIRIERPDAEAAADIFSKYLTDS 381 (512)
T ss_pred hhcCccccceEEEeCCCCHHHHHHHHHHHhhcc
Confidence 9999 887 58999999999999999887653
No 59
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.83 E-value=4.1e-08 Score=113.50 Aligned_cols=143 Identities=17% Similarity=0.131 Sum_probs=84.5
Q ss_pred CCCEEEecCCCCchHHHHHHHHhcC------CCCceEEEEcccCCCHHHHHhHhhcccceeecCCccccccccCCceEEE
Q psy568 416 HKPLVLCGPPGSGKTMTLLSALRAL------PDMEVVSLNFSSATTPELLLKTFDHYCEYRKTPNGVILSPIQLGKWLVL 489 (1614)
Q Consensus 416 ~~~vLL~Gp~GtGKT~lv~~~~~~l------~~~~~~~i~~s~~t~~~~l~~~~~~~~~~~~~~~g~~~~p~~~gk~~vl 489 (1614)
..|++|+||||||||++++.+++.+ ....++.++++. +.+.+.+...... .+.+-.+ .| .|+
T Consensus 42 ~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~------l~~~~~g~~~~~~--~~~~~~a--~~--~VL 109 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERAD------LVGEYIGHTAQKT--REVIKKA--LG--GVL 109 (261)
T ss_pred cceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHH------hhhhhccchHHHH--HHHHHhc--cC--CEE
Confidence 4579999999999999998887653 122344444432 2222111110000 0111111 12 489
Q ss_pred EeccCCCCCccccC--cccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCCCccccccccc-EEEecC
Q psy568 490 FCDEINLPDMDKYA--TQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLRHVP-VIYVDY 566 (1614)
Q Consensus 490 fiDdin~p~~d~~g--~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r~f~-~i~i~~ 566 (1614)
||||++....+... ....+..|...++.+. .++.+|++..+.....-..+++++.+||. .+.++.
T Consensus 110 ~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~------------~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~ 177 (261)
T TIGR02881 110 FIDEAYSLARGGEKDFGKEAIDTLVKGMEDNR------------NEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPD 177 (261)
T ss_pred EEechhhhccCCccchHHHHHHHHHHHHhccC------------CCEEEEecCCcchhHHHHhcChHHHhccceEEEECC
Confidence 99999985543211 1234555555555421 24666776655331122357889999995 699999
Q ss_pred CChhHHHHHHHHHHHh
Q psy568 567 PGETSLKQIYGTFSRA 582 (1614)
Q Consensus 567 p~~~~l~~I~~~~~~~ 582 (1614)
++.+++..|+..++..
T Consensus 178 ~~~~el~~Il~~~~~~ 193 (261)
T TIGR02881 178 YTVEELMEIAERMVKE 193 (261)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999887764
No 60
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=98.83 E-value=2.2e-08 Score=120.90 Aligned_cols=147 Identities=18% Similarity=0.254 Sum_probs=89.2
Q ss_pred hcCCCEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCCHHHHHhHhhcccceeecCCccccccccCCceEEEEecc
Q psy568 414 AEHKPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTPELLLKTFDHYCEYRKTPNGVILSPIQLGKWLVLFCDE 493 (1614)
Q Consensus 414 ~~~~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~~~~l~~~~~~~~~~~~~~~g~~~~p~~~gk~~vlfiDd 493 (1614)
..++++||+||||||||++++.++..+ +..++.+..+.. ...+.+.....- ...+.-+....++|+||||
T Consensus 177 ~~pkgvLL~GppGTGKT~LAkalA~~l-~~~fi~i~~s~l------~~k~~ge~~~~l---r~lf~~A~~~~P~ILfIDE 246 (398)
T PTZ00454 177 DPPRGVLLYGPPGTGKTMLAKAVAHHT-TATFIRVVGSEF------VQKYLGEGPRMV---RDVFRLARENAPSIIFIDE 246 (398)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhc-CCCEEEEehHHH------HHHhcchhHHHH---HHHHHHHHhcCCeEEEEEC
Confidence 356889999999999999999988876 556666654321 111111000000 0011111123458999999
Q ss_pred CCCCCccccC-----cccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCCCcccccc--ccc-EEEec
Q psy568 494 INLPDMDKYA-----TQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLR--HVP-VIYVD 565 (1614)
Q Consensus 494 in~p~~d~~g-----~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r--~f~-~i~i~ 565 (1614)
++......++ ...+...+.+++..-.-+.. ..++.+|+|+|.+. .++++++| ||. .|.++
T Consensus 247 ID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~-------~~~v~VI~aTN~~d-----~LDpAllR~GRfd~~I~~~ 314 (398)
T PTZ00454 247 VDSIATKRFDAQTGADREVQRILLELLNQMDGFDQ-------TTNVKVIMATNRAD-----TLDPALLRPGRLDRKIEFP 314 (398)
T ss_pred HhhhccccccccCCccHHHHHHHHHHHHHhhccCC-------CCCEEEEEecCCch-----hCCHHHcCCCcccEEEEeC
Confidence 9964322211 11222333344332111111 13678999999886 79999998 776 68999
Q ss_pred CCChhHHHHHHHHHHHh
Q psy568 566 YPGETSLKQIYGTFSRA 582 (1614)
Q Consensus 566 ~p~~~~l~~I~~~~~~~ 582 (1614)
.|+.++...|++.++..
T Consensus 315 ~P~~~~R~~Il~~~~~~ 331 (398)
T PTZ00454 315 LPDRRQKRLIFQTITSK 331 (398)
T ss_pred CcCHHHHHHHHHHHHhc
Confidence 99999999999877654
No 61
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=98.82 E-value=4.8e-08 Score=116.36 Aligned_cols=216 Identities=15% Similarity=0.162 Sum_probs=136.9
Q ss_pred CCcceeeeCcchhhHHHHHHHHHhcCCCEEEecCCCCchHHHHHHHHhcC--CCCceEEEEcccCCCHHHHHhHhhcccc
Q psy568 391 AASDVVVPTLDTVRHESLLYTWLAEHKPLVLCGPPGSGKTMTLLSALRAL--PDMEVVSLNFSSATTPELLLKTFDHYCE 468 (1614)
Q Consensus 391 ~~~~~~vpT~~t~r~~~ll~~~l~~~~~vLL~Gp~GtGKT~lv~~~~~~l--~~~~~~~i~~s~~t~~~~l~~~~~~~~~ 468 (1614)
.+.+++=..+.+.+....++.......+|||.|++||||..+++.+-+.. .+.+++.+||.+.-. .+ +++.+-
T Consensus 243 ~f~~Iig~S~~m~~~~~~akr~A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe--~L---lESELF 317 (560)
T COG3829 243 TFDDIIGESPAMLRVLELAKRIAKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPE--TL---LESELF 317 (560)
T ss_pred chhhhccCCHHHHHHHHHHHhhcCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCH--HH---HHHHHh
Confidence 46677878888899999999999999999999999999999887666543 357899999975543 12 222221
Q ss_pred eeecCCccccccccCCce--------EEEEeccCCCCCccccCcccHH-HHHHHHHHcCceeeCCCCceEeecCeEEEEe
Q psy568 469 YRKTPNGVILSPIQLGKW--------LVLFCDEINLPDMDKYATQRVI-SFLRQLIEQRGFYRPADKQWVSLERIQCVGA 539 (1614)
Q Consensus 469 ~~~~~~g~~~~p~~~gk~--------~vlfiDdin~p~~d~~g~q~~l-elLrqlld~~~~~~~~~~~~~~~~~~~~iaa 539 (1614)
- ..+|.++++.+.||+ .-+|+|||+- -+.+.. .+||-+ ..+.+..- ++......|+++|||
T Consensus 318 G--ye~GAFTGA~~~GK~GlfE~A~gGTLFLDEIge------mpl~LQaKLLRVL-QEkei~rv-G~t~~~~vDVRIIAA 387 (560)
T COG3829 318 G--YEKGAFTGASKGGKPGLFELANGGTLFLDEIGE------MPLPLQAKLLRVL-QEKEIERV-GGTKPIPVDVRIIAA 387 (560)
T ss_pred C--cCCccccccccCCCCcceeeccCCeEEehhhcc------CCHHHHHHHHHHH-hhceEEec-CCCCceeeEEEEEec
Confidence 1 124777777655544 4689999985 223333 355555 55565543 233334459999999
Q ss_pred ecCCC----CCCCCCCcccccccccEEEecCCCh----hHHHHHHHHHHHhhhhcc-hhhhhhHHHHHHHHHHHHHHHHh
Q psy568 540 CNPPT----DPGRKPLSHRFLRHVPVIYVDYPGE----TSLKQIYGTFSRAMLRLI-PPLRGYADALTNAMVELYLASQE 610 (1614)
Q Consensus 540 ~n~~~----~~g~~~l~~r~~r~f~~i~i~~p~~----~~l~~I~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~ 610 (1614)
+|..- -.|+ +-..|.-|.+|+.+.-|.- +++..+...++..+...+ ..+.++.+........
T Consensus 388 TN~nL~~~i~~G~--FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~a~~~L~~------- 458 (560)
T COG3829 388 TNRNLEKMIAEGT--FREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPDALALLLR------- 458 (560)
T ss_pred cCcCHHHHHhcCc--chhhheeeeceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCCHHHHHHHHh-------
Confidence 99752 1232 3334555777777766653 455555555555443322 2223333333332211
Q ss_pred hcCCCCCCccccChhhHHHHhhhhhcc
Q psy568 611 KFTQDMQPHYVYSPREMTRWVRGICEA 637 (1614)
Q Consensus 611 ~~~~~~~~hY~F~lRdl~~v~~~i~~~ 637 (1614)
-+|.-|.|+|.+++.+++..
T Consensus 459 -------y~WPGNVRELeNviER~v~~ 478 (560)
T COG3829 459 -------YDWPGNVRELENVIERAVNL 478 (560)
T ss_pred -------CCCCchHHHHHHHHHHHHhc
Confidence 15777999999999998864
No 62
>CHL00206 ycf2 Ycf2; Provisional
Probab=98.80 E-value=5.9e-08 Score=129.45 Aligned_cols=157 Identities=8% Similarity=0.088 Sum_probs=96.5
Q ss_pred HHHHHhcCCCEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCCHH---------------------HHHhHhhcc-
Q psy568 409 LYTWLAEHKPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTPE---------------------LLLKTFDHY- 466 (1614)
Q Consensus 409 l~~~l~~~~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~~~---------------------~l~~~~~~~- 466 (1614)
+...+...++|||+||||||||.+|++++... +.+++.+..+.-.... .+-+-++..
T Consensus 1623 lrLGl~pPKGILLiGPPGTGKTlLAKALA~es-~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~ 1701 (2281)
T CHL00206 1623 LRLALSPSRGILVIGSIGTGRSYLVKYLATNS-YVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTEL 1701 (2281)
T ss_pred HHcCCCCCCceEEECCCCCCHHHHHHHHHHhc-CCceEEEEHHHHhhcccccccccccccccccccccccccccccchhh
Confidence 44456678899999999999999999999876 7788888776543210 000000000
Q ss_pred cce-------eecCCcc-----ccccccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCe
Q psy568 467 CEY-------RKTPNGV-----ILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERI 534 (1614)
Q Consensus 467 ~~~-------~~~~~g~-----~~~p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~ 534 (1614)
+++ ....-|. ++.-++...+|||||||||-...+. .....+..|-..++..+ .. ....++
T Consensus 1702 ~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~d-s~~ltL~qLLneLDg~~--~~-----~s~~~V 1773 (2281)
T CHL00206 1702 LTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNE-SNYLSLGLLVNSLSRDC--ER-----CSTRNI 1773 (2281)
T ss_pred hhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCc-cceehHHHHHHHhcccc--cc-----CCCCCE
Confidence 000 0000011 1222234567999999999866552 11122334434444321 10 112468
Q ss_pred EEEEeecCCCCCCCCCCcccccc--ccc-EEEecCCChhHHHHHHHHH
Q psy568 535 QCVGACNPPTDPGRKPLSHRFLR--HVP-VIYVDYPGETSLKQIYGTF 579 (1614)
Q Consensus 535 ~~iaa~n~~~~~g~~~l~~r~~r--~f~-~i~i~~p~~~~l~~I~~~~ 579 (1614)
.+|||+|.|. .|+|+++| ||. .|.++.|+..+...++..+
T Consensus 1774 IVIAATNRPD-----~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~IL 1816 (2281)
T CHL00206 1774 LVIASTHIPQ-----KVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTL 1816 (2281)
T ss_pred EEEEeCCCcc-----cCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHH
Confidence 8999999997 79999998 887 7899999888878777644
No 63
>CHL00176 ftsH cell division protein; Validated
Probab=98.80 E-value=5e-08 Score=124.13 Aligned_cols=139 Identities=22% Similarity=0.282 Sum_probs=91.7
Q ss_pred cCCCEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCC------HHHHHhHhhcccceeecCCccccccccCCceEE
Q psy568 415 EHKPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATT------PELLLKTFDHYCEYRKTPNGVILSPIQLGKWLV 488 (1614)
Q Consensus 415 ~~~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~------~~~l~~~~~~~~~~~~~~~g~~~~p~~~gk~~v 488 (1614)
..+++||+||||||||++++.++... +.+++.++++.... ...+...+ ..+..+.++|
T Consensus 215 ~p~gVLL~GPpGTGKT~LAralA~e~-~~p~i~is~s~f~~~~~g~~~~~vr~lF---------------~~A~~~~P~I 278 (638)
T CHL00176 215 IPKGVLLVGPPGTGKTLLAKAIAGEA-EVPFFSISGSEFVEMFVGVGAARVRDLF---------------KKAKENSPCI 278 (638)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh-CCCeeeccHHHHHHHhhhhhHHHHHHHH---------------HHHhcCCCcE
Confidence 35689999999999999999998766 67777777654321 11111111 1122355689
Q ss_pred EEeccCCCCCccc-----cCcccHHHHHHHHHHcC-ceeeCCCCceEeecCeEEEEeecCCCCCCCCCCcccccc--ccc
Q psy568 489 LFCDEINLPDMDK-----YATQRVISFLRQLIEQR-GFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLR--HVP 560 (1614)
Q Consensus 489 lfiDdin~p~~d~-----~g~q~~lelLrqlld~~-~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r--~f~ 560 (1614)
+||||++...... -+.......|.+++..- |+-. -.++.+|||+|.+. .++++++| ||.
T Consensus 279 LfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~--------~~~ViVIaaTN~~~-----~LD~ALlRpGRFd 345 (638)
T CHL00176 279 VFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKG--------NKGVIVIAATNRVD-----ILDAALLRPGRFD 345 (638)
T ss_pred EEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccC--------CCCeeEEEecCchH-----hhhhhhhccccCc
Confidence 9999998643221 01222334455555431 2211 13688999999876 58888887 665
Q ss_pred -EEEecCCChhHHHHHHHHHHHh
Q psy568 561 -VIYVDYPGETSLKQIYGTFSRA 582 (1614)
Q Consensus 561 -~i~i~~p~~~~l~~I~~~~~~~ 582 (1614)
.+.++.|+.++...|++.++..
T Consensus 346 ~~I~v~lPd~~~R~~IL~~~l~~ 368 (638)
T CHL00176 346 RQITVSLPDREGRLDILKVHARN 368 (638)
T ss_pred eEEEECCCCHHHHHHHHHHHHhh
Confidence 7899999999999998877654
No 64
>CHL00181 cbbX CbbX; Provisional
Probab=98.79 E-value=9.5e-09 Score=119.20 Aligned_cols=143 Identities=18% Similarity=0.177 Sum_probs=88.5
Q ss_pred CCCEEEecCCCCchHHHHHHHHhcCC------CCceEEEEcccCCCHHHHHhHhhcccceeecCCccccccccCCceEEE
Q psy568 416 HKPLVLCGPPGSGKTMTLLSALRALP------DMEVVSLNFSSATTPELLLKTFDHYCEYRKTPNGVILSPIQLGKWLVL 489 (1614)
Q Consensus 416 ~~~vLL~Gp~GtGKT~lv~~~~~~l~------~~~~~~i~~s~~t~~~~l~~~~~~~~~~~~~~~g~~~~p~~~gk~~vl 489 (1614)
+.|++|+||||||||++++.++..+. ..+++.++ ..++.+.+.+....+. .+.+-.+ .| .|+
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~------~~~l~~~~~g~~~~~~--~~~l~~a--~g--gVL 126 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVT------RDDLVGQYIGHTAPKT--KEVLKKA--MG--GVL 126 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEec------HHHHHHHHhccchHHH--HHHHHHc--cC--CEE
Confidence 67799999999999999998876431 22344443 2334443322111110 0111112 12 589
Q ss_pred EeccCCCCC-cc---ccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCCCccccccccc-EEEe
Q psy568 490 FCDEINLPD-MD---KYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLRHVP-VIYV 564 (1614)
Q Consensus 490 fiDdin~p~-~d---~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r~f~-~i~i 564 (1614)
||||++... ++ .+| ..+++.|.++++.+. .++.+|+|.++..-..-..++|.|.+||. .|.+
T Consensus 127 fIDE~~~l~~~~~~~~~~-~e~~~~L~~~me~~~------------~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F 193 (287)
T CHL00181 127 FIDEAYYLYKPDNERDYG-SEAIEILLQVMENQR------------DDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDF 193 (287)
T ss_pred EEEccchhccCCCccchH-HHHHHHHHHHHhcCC------------CCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEc
Confidence 999999732 11 223 456777778887531 35777887654210001134688999998 7999
Q ss_pred cCCChhHHHHHHHHHHHhh
Q psy568 565 DYPGETSLKQIYGTFSRAM 583 (1614)
Q Consensus 565 ~~p~~~~l~~I~~~~~~~~ 583 (1614)
++++.+++..|+..++...
T Consensus 194 ~~~t~~el~~I~~~~l~~~ 212 (287)
T CHL00181 194 PDYTPEELLQIAKIMLEEQ 212 (287)
T ss_pred CCcCHHHHHHHHHHHHHHh
Confidence 9999999999998887654
No 65
>KOG0736|consensus
Probab=98.79 E-value=1e-08 Score=124.49 Aligned_cols=157 Identities=26% Similarity=0.400 Sum_probs=97.8
Q ss_pred HHHHHHHHhcCCCEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCCHHHHHhHhhcccceeecCCccccccccCCc
Q psy568 406 ESLLYTWLAEHKPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTPELLLKTFDHYCEYRKTPNGVILSPIQLGK 485 (1614)
Q Consensus 406 ~~ll~~~l~~~~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~~~~l~~~~~~~~~~~~~~~g~~~~p~~~gk 485 (1614)
-.++..-++-+-.|||+||||||||.+++.++-.. .++|-+--.|+.+ .++-+..+.-. ..++-+ ++..+
T Consensus 695 peLfssglrkRSGILLYGPPGTGKTLlAKAVATEc------sL~FlSVKGPELL-NMYVGqSE~NV--R~VFer-AR~A~ 764 (953)
T KOG0736|consen 695 PELFSSGLRKRSGILLYGPPGTGKTLLAKAVATEC------SLNFLSVKGPELL-NMYVGQSEENV--REVFER-ARSAA 764 (953)
T ss_pred hhhhhccccccceeEEECCCCCchHHHHHHHHhhc------eeeEEeecCHHHH-HHHhcchHHHH--HHHHHH-hhccC
Confidence 34555556667789999999999999999888765 3444444555544 33333222111 012222 23567
Q ss_pred eEEEEeccCCCCCccc--cC-cccHHH-HHHHHHHc-CceeeCCCCceEeecCeEEEEeecCCCCCCCCCCcccccc--c
Q psy568 486 WLVLFCDEINLPDMDK--YA-TQRVIS-FLRQLIEQ-RGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLR--H 558 (1614)
Q Consensus 486 ~~vlfiDdin~p~~d~--~g-~q~~le-lLrqlld~-~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r--~ 558 (1614)
+||||+||++..++.+ -| +..++. ++-|++.. .|+.+. ...++.+|||+|.|. -|+|+|+| |
T Consensus 765 PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~------~s~~VFViGATNRPD-----LLDpALLRPGR 833 (953)
T KOG0736|consen 765 PCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDS------SSQDVFVIGATNRPD-----LLDPALLRPGR 833 (953)
T ss_pred CeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCC------CCCceEEEecCCCcc-----ccChhhcCCCc
Confidence 7999999999866654 22 122222 33444432 344432 224789999999997 69999998 8
Q ss_pred cc-EEEecCCCh-hHHHHHHHHHHHhh
Q psy568 559 VP-VIYVDYPGE-TSLKQIYGTFSRAM 583 (1614)
Q Consensus 559 f~-~i~i~~p~~-~~l~~I~~~~~~~~ 583 (1614)
|- .+++..+++ ++-.+|++.+.+.+
T Consensus 834 FDKLvyvG~~~d~esk~~vL~AlTrkF 860 (953)
T KOG0736|consen 834 FDKLVYVGPNEDAESKLRVLEALTRKF 860 (953)
T ss_pred cceeEEecCCccHHHHHHHHHHHHHHc
Confidence 88 677776654 44556666655543
No 66
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.77 E-value=1.7e-08 Score=122.86 Aligned_cols=140 Identities=23% Similarity=0.315 Sum_probs=91.3
Q ss_pred cCCCEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCC------HHHHHhHhhcccceeecCCccccccccCCceEE
Q psy568 415 EHKPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATT------PELLLKTFDHYCEYRKTPNGVILSPIQLGKWLV 488 (1614)
Q Consensus 415 ~~~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~------~~~l~~~~~~~~~~~~~~~g~~~~p~~~gk~~v 488 (1614)
..++|||+||||||||++++.+++.+ +.+++.++++.... ...+...+. -+.....+|
T Consensus 164 ~p~gvLL~GppGtGKT~lAkaia~~~-~~~~i~v~~~~l~~~~~g~~~~~i~~~f~---------------~a~~~~p~I 227 (389)
T PRK03992 164 PPKGVLLYGPPGTGKTLLAKAVAHET-NATFIRVVGSELVQKFIGEGARLVRELFE---------------LAREKAPSI 227 (389)
T ss_pred CCCceEEECCCCCChHHHHHHHHHHh-CCCEEEeehHHHhHhhccchHHHHHHHHH---------------HHHhcCCeE
Confidence 35689999999999999999998876 55677776653221 111111111 111234589
Q ss_pred EEeccCCCCCccc-----cCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCCCcccccc--ccc-
Q psy568 489 LFCDEINLPDMDK-----YATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLR--HVP- 560 (1614)
Q Consensus 489 lfiDdin~p~~d~-----~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r--~f~- 560 (1614)
+||||++...... .+...+...+.+++....-+.. ..++.+|||+|.+. .++++++| ||.
T Consensus 228 lfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~-------~~~v~VI~aTn~~~-----~ld~allRpgRfd~ 295 (389)
T PRK03992 228 IFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDP-------RGNVKIIAATNRID-----ILDPAILRPGRFDR 295 (389)
T ss_pred EEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCC-------CCCEEEEEecCChh-----hCCHHHcCCccCce
Confidence 9999999643221 1233344455566543211111 12688999999875 68999987 775
Q ss_pred EEEecCCChhHHHHHHHHHHHh
Q psy568 561 VIYVDYPGETSLKQIYGTFSRA 582 (1614)
Q Consensus 561 ~i~i~~p~~~~l~~I~~~~~~~ 582 (1614)
.|.++.|+.++...|++.++..
T Consensus 296 ~I~v~~P~~~~R~~Il~~~~~~ 317 (389)
T PRK03992 296 IIEVPLPDEEGRLEILKIHTRK 317 (389)
T ss_pred EEEECCCCHHHHHHHHHHHhcc
Confidence 7999999999999998876553
No 67
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.76 E-value=4.4e-08 Score=106.78 Aligned_cols=156 Identities=17% Similarity=0.191 Sum_probs=107.3
Q ss_pred eeeCcchhhHHHHHHHHHhcC----CCEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCCHHHHHhHhhcccceee
Q psy568 396 VVPTLDTVRHESLLYTWLAEH----KPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTPELLLKTFDHYCEYRK 471 (1614)
Q Consensus 396 ~vpT~~t~r~~~ll~~~l~~~----~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~~~~l~~~~~~~~~~~~ 471 (1614)
||--......+.+.-.+.+.+ -|+||+||||.|||+++.-++..+ +.++.......--.+.++...+..
T Consensus 28 fiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Em-gvn~k~tsGp~leK~gDlaaiLt~------ 100 (332)
T COG2255 28 FIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANEL-GVNLKITSGPALEKPGDLAAILTN------ 100 (332)
T ss_pred hcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHh-cCCeEecccccccChhhHHHHHhc------
Confidence 444444444444433333322 589999999999999887777666 555555555555567777766642
Q ss_pred cCCccccccccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCc--eeeCC---CC-ceEeecCeEEEEeecCCCC
Q psy568 472 TPNGVILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRG--FYRPA---DK-QWVSLERIQCVGACNPPTD 545 (1614)
Q Consensus 472 ~~~g~~~~p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~--~~~~~---~~-~~~~~~~~~~iaa~n~~~~ 545 (1614)
+. ..=|+||||||. -+..+-|+|-..|+.-. +...+ .. ....++.|++|||++..|
T Consensus 101 ------Le-----~~DVLFIDEIHr------l~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr~G- 162 (332)
T COG2255 101 ------LE-----EGDVLFIDEIHR------LSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTRAG- 162 (332)
T ss_pred ------CC-----cCCeEEEehhhh------cChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeeccccc-
Confidence 11 125899999999 44558899999998643 12211 12 224568999999999886
Q ss_pred CCCCCCccccccccc-EEEecCCChhHHHHHHHHHH
Q psy568 546 PGRKPLSHRFLRHVP-VIYVDYPGETSLKQIYGTFS 580 (1614)
Q Consensus 546 ~g~~~l~~r~~r~f~-~i~i~~p~~~~l~~I~~~~~ 580 (1614)
.|+..|..||- +..+++.+.+++..|.....
T Consensus 163 ----~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a 194 (332)
T COG2255 163 ----MLTNPLRDRFGIIQRLEFYTVEELEEIVKRSA 194 (332)
T ss_pred ----cccchhHHhcCCeeeeecCCHHHHHHHHHHHH
Confidence 68888888998 56899999999999976544
No 68
>KOG2028|consensus
Probab=98.76 E-value=2.6e-08 Score=110.75 Aligned_cols=141 Identities=18% Similarity=0.228 Sum_probs=97.7
Q ss_pred HHHHHHhcCC--CEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCC-CHHHHHhHhhcccceeecCCccccccccCC
Q psy568 408 LLYTWLAEHK--PLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSAT-TPELLLKTFDHYCEYRKTPNGVILSPIQLG 484 (1614)
Q Consensus 408 ll~~~l~~~~--~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t-~~~~l~~~~~~~~~~~~~~~g~~~~p~~~g 484 (1614)
++..++..++ .++|.||||||||++++-++.......+.++..|+.+ ...++.+.+++.-.... -.+
T Consensus 152 llrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a~t~dvR~ife~aq~~~~----------l~k 221 (554)
T KOG2028|consen 152 LLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNAKTNDVRDIFEQAQNEKS----------LTK 221 (554)
T ss_pred HHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccccchHHHHHHHHHHHHHHh----------hhc
Confidence 5666777763 6899999999999999888877655556667777544 45778888875321111 035
Q ss_pred ceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCCCcccccccccEEEe
Q psy568 485 KWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLRHVPVIYV 564 (1614)
Q Consensus 485 k~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r~f~~i~i 564 (1614)
++.|+||||||.-.. +| ...+...++. .++.+|||+.-. -.+.|..+|++|+.++.+
T Consensus 222 rkTilFiDEiHRFNk----sQ--QD~fLP~VE~--------------G~I~lIGATTEN---PSFqln~aLlSRC~VfvL 278 (554)
T KOG2028|consen 222 RKTILFIDEIHRFNK----SQ--QDTFLPHVEN--------------GDITLIGATTEN---PSFQLNAALLSRCRVFVL 278 (554)
T ss_pred ceeEEEeHHhhhhhh----hh--hhcccceecc--------------CceEEEecccCC---CccchhHHHHhccceeEe
Confidence 679999999998211 11 1122222222 258889887542 246899999999999999
Q ss_pred cCCChhHHHHHHHHHHH
Q psy568 565 DYPGETSLKQIYGTFSR 581 (1614)
Q Consensus 565 ~~p~~~~l~~I~~~~~~ 581 (1614)
.....+.+..|+..-+.
T Consensus 279 ekL~~n~v~~iL~raia 295 (554)
T KOG2028|consen 279 EKLPVNAVVTILMRAIA 295 (554)
T ss_pred ccCCHHHHHHHHHHHHH
Confidence 99999999999765443
No 69
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=3.4e-08 Score=120.27 Aligned_cols=195 Identities=20% Similarity=0.211 Sum_probs=126.3
Q ss_pred EEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCCHHHHHhHhhcccceeecCCccccccccC--CceEEEEeccCCC
Q psy568 419 LVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTPELLLKTFDHYCEYRKTPNGVILSPIQL--GKWLVLFCDEINL 496 (1614)
Q Consensus 419 vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~~~~l~~~~~~~~~~~~~~~g~~~~p~~~--gk~~vlfiDdin~ 496 (1614)
++|+||||+|||++.+.+++.+ +..++++......+-..+.|.=.....- -.|++...++. -+.-|+.+|||+.
T Consensus 353 LcLVGPPGVGKTSLgkSIA~al-~RkfvR~sLGGvrDEAEIRGHRRTYIGa---mPGrIiQ~mkka~~~NPv~LLDEIDK 428 (782)
T COG0466 353 LCLVGPPGVGKTSLGKSIAKAL-GRKFVRISLGGVRDEAEIRGHRRTYIGA---MPGKIIQGMKKAGVKNPVFLLDEIDK 428 (782)
T ss_pred EEEECCCCCCchhHHHHHHHHh-CCCEEEEecCccccHHHhcccccccccc---CChHHHHHHHHhCCcCCeEEeechhh
Confidence 4689999999999999999998 8899999999888888887652221111 12444432211 1235677899998
Q ss_pred CCccccCcccHHHHHHHHHHc---CceeeCCCCceEeecCeEEEEeecCCCCCCCCCCcccccccccEEEecCCChhHHH
Q psy568 497 PDMDKYATQRVISFLRQLIEQ---RGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLRHVPVIYVDYPGETSLK 573 (1614)
Q Consensus 497 p~~d~~g~q~~lelLrqlld~---~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r~f~~i~i~~p~~~~l~ 573 (1614)
-..+-.|. |-..|..++|- ..|-|.--..-..+.++.||||.|... .+|..|+.|+-+|.++..+.++-.
T Consensus 429 m~ss~rGD--PaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~-----tIP~PLlDRMEiI~lsgYt~~EKl 501 (782)
T COG0466 429 MGSSFRGD--PASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLD-----TIPAPLLDRMEVIRLSGYTEDEKL 501 (782)
T ss_pred ccCCCCCC--hHHHHHhhcCHhhcCchhhccccCccchhheEEEeecCccc-----cCChHHhcceeeeeecCCChHHHH
Confidence 77774453 33344455543 224333222334567899999999764 699999999999999999999999
Q ss_pred HHHHHHHHhh-hh---cchhhhhhHHHHHHHHHHHHHHHHhhcCCCCCCccccChhhHHHHhhhhhcc
Q psy568 574 QIYGTFSRAM-LR---LIPPLRGYADALTNAMVELYLASQEKFTQDMQPHYVYSPREMTRWVRGICEA 637 (1614)
Q Consensus 574 ~I~~~~~~~~-~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~hY~F~lRdl~~v~~~i~~~ 637 (1614)
+|...++=.- +. +.+.-..+.+.....++..|.+= =+.|.|.|.+..+++-
T Consensus 502 ~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI~~YTRE-------------AGVR~LeR~i~ki~RK 556 (782)
T COG0466 502 EIAKRHLIPKQLKEHGLKKGELTITDEAIKDIIRYYTRE-------------AGVRNLEREIAKICRK 556 (782)
T ss_pred HHHHHhcchHHHHHcCCCccceeecHHHHHHHHHHHhHh-------------hhhhHHHHHHHHHHHH
Confidence 9977653221 11 11111233444555555544321 1667777777766653
No 70
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=98.73 E-value=1.1e-07 Score=119.98 Aligned_cols=139 Identities=22% Similarity=0.324 Sum_probs=89.1
Q ss_pred cCCCEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCC------CHHHHHhHhhcccceeecCCccccccccCCceEE
Q psy568 415 EHKPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSAT------TPELLLKTFDHYCEYRKTPNGVILSPIQLGKWLV 488 (1614)
Q Consensus 415 ~~~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t------~~~~l~~~~~~~~~~~~~~~g~~~~p~~~gk~~v 488 (1614)
..+++||+||||||||++++.++... +.+++.++.+... +...+...|.. +....++|
T Consensus 87 ~~~giLL~GppGtGKT~la~alA~~~-~~~~~~i~~~~~~~~~~g~~~~~l~~~f~~---------------a~~~~p~I 150 (495)
T TIGR01241 87 IPKGVLLVGPPGTGKTLLAKAVAGEA-GVPFFSISGSDFVEMFVGVGASRVRDLFEQ---------------AKKNAPCI 150 (495)
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHc-CCCeeeccHHHHHHHHhcccHHHHHHHHHH---------------HHhcCCCE
Confidence 34689999999999999999998776 6677766654321 11222222211 11233479
Q ss_pred EEeccCCCCCccc---c--CcccHHHHHHHHHHc-CceeeCCCCceEeecCeEEEEeecCCCCCCCCCCcccccc--ccc
Q psy568 489 LFCDEINLPDMDK---Y--ATQRVISFLRQLIEQ-RGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLR--HVP 560 (1614)
Q Consensus 489 lfiDdin~p~~d~---~--g~q~~lelLrqlld~-~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r--~f~ 560 (1614)
+||||++.-.... . +.......+.+++.. .++.. -.++.+|||+|.+. .++++++| ||.
T Consensus 151 l~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~--------~~~v~vI~aTn~~~-----~ld~al~r~gRfd 217 (495)
T TIGR01241 151 IFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGT--------NTGVIVIAATNRPD-----VLDPALLRPGRFD 217 (495)
T ss_pred EEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccC--------CCCeEEEEecCChh-----hcCHHHhcCCcce
Confidence 9999998643221 1 112222333333322 12211 13588999999986 69999987 775
Q ss_pred -EEEecCCChhHHHHHHHHHHHh
Q psy568 561 -VIYVDYPGETSLKQIYGTFSRA 582 (1614)
Q Consensus 561 -~i~i~~p~~~~l~~I~~~~~~~ 582 (1614)
.+.++.|+.++...|+..++..
T Consensus 218 ~~i~i~~Pd~~~R~~il~~~l~~ 240 (495)
T TIGR01241 218 RQVVVDLPDIKGREEILKVHAKN 240 (495)
T ss_pred EEEEcCCCCHHHHHHHHHHHHhc
Confidence 7999999999999999887654
No 71
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.73 E-value=5.1e-08 Score=116.73 Aligned_cols=137 Identities=20% Similarity=0.225 Sum_probs=95.5
Q ss_pred CCEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCCHHHHHhHhhcccceeecCCccccccccCCceEEEEeccCCC
Q psy568 417 KPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTPELLLKTFDHYCEYRKTPNGVILSPIQLGKWLVLFCDEINL 496 (1614)
Q Consensus 417 ~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~~~~l~~~~~~~~~~~~~~~g~~~~p~~~gk~~vlfiDdin~ 496 (1614)
.+++|+||||||||++++.+++.+ +..+...+.+.......+.+.+.. .+...|+||||++.
T Consensus 52 ~~~ll~GppG~GKT~la~~ia~~l-~~~~~~~~~~~~~~~~~l~~~l~~-----------------l~~~~vl~IDEi~~ 113 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLANIIANEM-GVNIRITSGPALEKPGDLAAILTN-----------------LEEGDVLFIDEIHR 113 (328)
T ss_pred CcEEEECCCCccHHHHHHHHHHHh-CCCeEEEecccccChHHHHHHHHh-----------------cccCCEEEEecHhh
Confidence 579999999999999999998877 455555555444444455444321 12236889999998
Q ss_pred CCccccCcccHHHHHHHHHHcCceee--CCC---Cc-eEeecCeEEEEeecCCCCCCCCCCccccccccc-EEEecCCCh
Q psy568 497 PDMDKYATQRVISFLRQLIEQRGFYR--PAD---KQ-WVSLERIQCVGACNPPTDPGRKPLSHRFLRHVP-VIYVDYPGE 569 (1614)
Q Consensus 497 p~~d~~g~q~~lelLrqlld~~~~~~--~~~---~~-~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r~f~-~i~i~~p~~ 569 (1614)
- +....+.++.+++...... .+. .. ...++++.+|+|+++++ .+++++.+||. ++.++.|+.
T Consensus 114 l------~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~~-----~l~~~L~sRf~~~~~l~~~~~ 182 (328)
T PRK00080 114 L------SPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTRAG-----LLTSPLRDRFGIVQRLEFYTV 182 (328)
T ss_pred c------chHHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCCcc-----cCCHHHHHhcCeeeecCCCCH
Confidence 3 3346678888888755321 111 11 12346789999998875 57888989985 689999999
Q ss_pred hHHHHHHHHHHHh
Q psy568 570 TSLKQIYGTFSRA 582 (1614)
Q Consensus 570 ~~l~~I~~~~~~~ 582 (1614)
+++..|+......
T Consensus 183 ~e~~~il~~~~~~ 195 (328)
T PRK00080 183 EELEKIVKRSARI 195 (328)
T ss_pred HHHHHHHHHHHHH
Confidence 9999998866553
No 72
>KOG0731|consensus
Probab=98.72 E-value=3.6e-08 Score=123.05 Aligned_cols=149 Identities=22% Similarity=0.260 Sum_probs=100.0
Q ss_pred HHhcCCCEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCCHHHHHhHhhcccceeecCCccccccccCCceEEEEe
Q psy568 412 WLAEHKPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTPELLLKTFDHYCEYRKTPNGVILSPIQLGKWLVLFC 491 (1614)
Q Consensus 412 ~l~~~~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~~~~l~~~~~~~~~~~~~~~g~~~~p~~~gk~~vlfi 491 (1614)
-.+..+.|||+||||||||.+++.++..- +.+++.++-|... ..+.+.-.-|. .-++.-++...++++||
T Consensus 340 GAKiPkGvLL~GPPGTGKTLLAKAiAGEA-gVPF~svSGSEFv------E~~~g~~asrv---r~lf~~ar~~aP~iifi 409 (774)
T KOG0731|consen 340 GAKIPKGVLLVGPPGTGKTLLAKAIAGEA-GVPFFSVSGSEFV------EMFVGVGASRV---RDLFPLARKNAPSIIFI 409 (774)
T ss_pred CCcCcCceEEECCCCCcHHHHHHHHhccc-CCceeeechHHHH------HHhcccchHHH---HHHHHHhhccCCeEEEe
Confidence 44557899999999999999999888765 7777776654332 22211100010 11222334566799999
Q ss_pred ccCCCCCccc----c-C-cccHHHHHHHHHHc-CceeeCCCCceEeecCeEEEEeecCCCCCCCCCCcccccc--ccc-E
Q psy568 492 DEINLPDMDK----Y-A-TQRVISFLRQLIEQ-RGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLR--HVP-V 561 (1614)
Q Consensus 492 Ddin~p~~d~----~-g-~q~~lelLrqlld~-~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r--~f~-~ 561 (1614)
|||+.+.... . | .+.--..|.|++-. -||-.. .++.++|+||.++ .|+++|+| ||. .
T Consensus 410 deida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~--------~~vi~~a~tnr~d-----~ld~allrpGRfdr~ 476 (774)
T KOG0731|consen 410 DEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETS--------KGVIVLAATNRPD-----ILDPALLRPGRFDRQ 476 (774)
T ss_pred cccccccccccccccCCCChHHHHHHHHHHHHhcCCcCC--------CcEEEEeccCCcc-----ccCHHhcCCCccccc
Confidence 9999876544 1 2 23334466776643 333221 3688999999987 68888887 666 7
Q ss_pred EEecCCChhHHHHHHHHHHHhh
Q psy568 562 IYVDYPGETSLKQIYGTFSRAM 583 (1614)
Q Consensus 562 i~i~~p~~~~l~~I~~~~~~~~ 583 (1614)
|+++.|+......||..+.+..
T Consensus 477 i~i~~p~~~~r~~i~~~h~~~~ 498 (774)
T KOG0731|consen 477 IQIDLPDVKGRASILKVHLRKK 498 (774)
T ss_pred eeccCCchhhhHHHHHHHhhcc
Confidence 8999999999999988776643
No 73
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=98.71 E-value=4.5e-08 Score=114.90 Aligned_cols=154 Identities=16% Similarity=0.231 Sum_probs=96.0
Q ss_pred HHHhcC-CCEEEecCCCCchHHHHHHHHhcCCCCce--------EEEE----------------------cccCCCHHHH
Q psy568 411 TWLAEH-KPLVLCGPPGSGKTMTLLSALRALPDMEV--------VSLN----------------------FSSATTPELL 459 (1614)
Q Consensus 411 ~~l~~~-~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~--------~~i~----------------------~s~~t~~~~l 459 (1614)
.++..| .|+||.|+||+|||++++.+..-++.... ..+. ....++.+.+
T Consensus 23 ~~~~~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l 102 (334)
T PRK13407 23 TAIDPGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPEDCPEWAHVSSTTMIERPTPVVDLPLGVTEDRV 102 (334)
T ss_pred HHhccCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccCCcccccccCCcccccCCccccCCCCCCccee
Confidence 344355 79999999999999999999887753111 1111 1111222223
Q ss_pred HhHhhc--cc--ceeecCCccccccccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCcee-eCCCCceEeecCe
Q psy568 460 LKTFDH--YC--EYRKTPNGVILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFY-RPADKQWVSLERI 534 (1614)
Q Consensus 460 ~~~~~~--~~--~~~~~~~g~~~~p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~-~~~~~~~~~~~~~ 534 (1614)
.|.++- .+ .......|.+..+ ...++|+||+|. .+..+.+.|++.++.+... .+.+.......++
T Consensus 103 ~G~~d~~~~l~~g~~~~~~G~l~~A----~~GiL~lDEInr------l~~~~q~~Lle~mee~~v~v~r~G~~~~~p~rf 172 (334)
T PRK13407 103 VGALDIERALTRGEKAFEPGLLARA----NRGYLYIDEVNL------LEDHIVDLLLDVAQSGENVVEREGLSIRHPARF 172 (334)
T ss_pred ecchhhhhhhhcCCeeecCCceEEc----CCCeEEecChHh------CCHHHHHHHHHHHHcCCeEEEECCeEEecCCCE
Confidence 332211 00 0111223444322 225788999999 5556888999999988743 2333344444589
Q ss_pred EEEEeecCCCCCCCCCCccccccccc-EEEecCCCh-hHHHHHHHH
Q psy568 535 QCVGACNPPTDPGRKPLSHRFLRHVP-VIYVDYPGE-TSLKQIYGT 578 (1614)
Q Consensus 535 ~~iaa~n~~~~~g~~~l~~r~~r~f~-~i~i~~p~~-~~l~~I~~~ 578 (1614)
.+++|+||.. ..+++.++.||. .+.+++|.. ++...|...
T Consensus 173 iviAt~NP~e----~~l~~aLldRF~~~v~v~~~~~~~e~~~il~~ 214 (334)
T PRK13407 173 VLVGSGNPEE----GELRPQLLDRFGLSVEVRSPRDVETRVEVIRR 214 (334)
T ss_pred EEEecCCccc----CCCCHHHHhhcceEEEcCCCCcHHHHHHHHHH
Confidence 9999999864 259999999998 577888876 666666543
No 74
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.70 E-value=2.3e-08 Score=116.24 Aligned_cols=184 Identities=16% Similarity=0.118 Sum_probs=104.8
Q ss_pred CCCEEEecCCCCchHHHHHHHHhcCC------CCceEEEEcccCCCHHHHHhHhhcccceeecCCccccccccCCceEEE
Q psy568 416 HKPLVLCGPPGSGKTMTLLSALRALP------DMEVVSLNFSSATTPELLLKTFDHYCEYRKTPNGVILSPIQLGKWLVL 489 (1614)
Q Consensus 416 ~~~vLL~Gp~GtGKT~lv~~~~~~l~------~~~~~~i~~s~~t~~~~l~~~~~~~~~~~~~~~g~~~~p~~~gk~~vl 489 (1614)
+.|++|+||||||||++++.+++.+. ..+++.++++ ++.+.+.+...... .+.+-.+ ...++
T Consensus 58 ~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~------~l~~~~~g~~~~~~--~~~~~~a----~~gvL 125 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRD------DLVGQYIGHTAPKT--KEILKRA----MGGVL 125 (284)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHH------HHhHhhcccchHHH--HHHHHHc----cCcEE
Confidence 56899999999999999977665442 1245555532 23222211111000 0111111 12689
Q ss_pred EeccCCCCC-c--cccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCCCccccccccc-EEEec
Q psy568 490 FCDEINLPD-M--DKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLRHVP-VIYVD 565 (1614)
Q Consensus 490 fiDdin~p~-~--d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r~f~-~i~i~ 565 (1614)
||||++.-. . +.-....+.+.|.++++.+. .++.+|+|+++.....-..+++.|.+||. .|.+|
T Consensus 126 ~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~------------~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp 193 (284)
T TIGR02880 126 FIDEAYYLYRPDNERDYGQEAIEILLQVMENQR------------DDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFP 193 (284)
T ss_pred EEechhhhccCCCccchHHHHHHHHHHHHhcCC------------CCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeC
Confidence 999999532 1 11123445667777777532 36788888765421112245789999996 79999
Q ss_pred CCChhHHHHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHHHhhcCCCCCCccccChhhHHHHhhhhhc
Q psy568 566 YPGETSLKQIYGTFSRAMLRLIPPLRGYADALTNAMVELYLASQEKFTQDMQPHYVYSPREMTRWVRGICE 636 (1614)
Q Consensus 566 ~p~~~~l~~I~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~hY~F~lRdl~~v~~~i~~ 636 (1614)
.++.+++..|+..++...-. .+.........+.... .. ..++.-|.|.+.++++....
T Consensus 194 ~l~~edl~~I~~~~l~~~~~------~l~~~a~~~L~~~l~~----~~---~~~~~GN~R~lrn~ve~~~~ 251 (284)
T TIGR02880 194 DYSEAELLVIAGLMLKEQQY------RFSAEAEEAFADYIAL----RR---TQPHFANARSIRNAIDRARL 251 (284)
T ss_pred CcCHHHHHHHHHHHHHHhcc------ccCHHHHHHHHHHHHH----hC---CCCCCChHHHHHHHHHHHHH
Confidence 99999999999888775421 1112222222221111 10 11344589999888876543
No 75
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.70 E-value=7.6e-08 Score=127.34 Aligned_cols=158 Identities=20% Similarity=0.254 Sum_probs=117.3
Q ss_pred EEEecCCCCchHHHHHHHHhcCC--CCceEEEEcccCCCHHHHHhHhhcccceeec-CCccccccccCCceEEEEeccCC
Q psy568 419 LVLCGPPGSGKTMTLLSALRALP--DMEVVSLNFSSATTPELLLKTFDHYCEYRKT-PNGVILSPIQLGKWLVLFCDEIN 495 (1614)
Q Consensus 419 vLL~Gp~GtGKT~lv~~~~~~l~--~~~~~~i~~s~~t~~~~l~~~~~~~~~~~~~-~~g~~~~p~~~gk~~vlfiDdin 495 (1614)
+||+||||||||.+++.++..+- ...++.+++|....+..+...+.....+... ..|.+....+.....|+++|||.
T Consensus 599 ~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~~l~g~~~gyvg~~~~g~L~~~v~~~p~svvllDEie 678 (852)
T TIGR03345 599 FLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTVSRLKGSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVE 678 (852)
T ss_pred EEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhhccccCCCCCcccccccchHHHHHHhCCCcEEEEechh
Confidence 79999999999999999888773 3467899998877665554444432222211 13455555555567899999998
Q ss_pred CCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCC--------CC----------------CCCC
Q psy568 496 LPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTD--------PG----------------RKPL 551 (1614)
Q Consensus 496 ~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~--------~g----------------~~~l 551 (1614)
. ..+.+..+|.|++|.|.+.+. .+......+..||.|+|-+.. .. +..+
T Consensus 679 k------a~~~v~~~Llq~ld~g~l~d~-~Gr~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 751 (852)
T TIGR03345 679 K------AHPDVLELFYQVFDKGVMEDG-EGREIDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVF 751 (852)
T ss_pred h------cCHHHHHHHHHHhhcceeecC-CCcEEeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhc
Confidence 6 666789999999999887764 566778889999999996431 00 1236
Q ss_pred cccccccccEEEecCCChhHHHHHHHHHHHhh
Q psy568 552 SHRFLRHVPVIYVDYPGETSLKQIYGTFSRAM 583 (1614)
Q Consensus 552 ~~r~~r~f~~i~i~~p~~~~l~~I~~~~~~~~ 583 (1614)
.|.|++|+.+|.+.+.+.+++..|+...+...
T Consensus 752 ~PEflnRi~iI~F~pLs~e~l~~Iv~~~L~~l 783 (852)
T TIGR03345 752 KPAFLGRMTVIPYLPLDDDVLAAIVRLKLDRI 783 (852)
T ss_pred cHHHhcceeEEEeCCCCHHHHHHHHHHHHHHH
Confidence 78889999999999999999999988766554
No 76
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.69 E-value=8.1e-08 Score=128.32 Aligned_cols=201 Identities=17% Similarity=0.241 Sum_probs=129.3
Q ss_pred CEEEecCCCCchHHHHHHHHhcCC--CCceEEEEcccCCCHHHHHhHhhcccceeec-CCccccccccCCceEEEEeccC
Q psy568 418 PLVLCGPPGSGKTMTLLSALRALP--DMEVVSLNFSSATTPELLLKTFDHYCEYRKT-PNGVILSPIQLGKWLVLFCDEI 494 (1614)
Q Consensus 418 ~vLL~Gp~GtGKT~lv~~~~~~l~--~~~~~~i~~s~~t~~~~l~~~~~~~~~~~~~-~~g~~~~p~~~gk~~vlfiDdi 494 (1614)
++||+||+|||||.+++.+...+. +.+++.+++|..+....+...+.....+... ..|.+....+.....|+|+|||
T Consensus 597 ~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDei 676 (852)
T TIGR03346 597 SFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEV 676 (852)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHHHhcCCCCCccCcccccHHHHHHHcCCCcEEEEecc
Confidence 489999999999999999998763 4578999998776644443333222111111 1233333333344578999999
Q ss_pred CCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCC------C--------------CCCCCccc
Q psy568 495 NLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTD------P--------------GRKPLSHR 554 (1614)
Q Consensus 495 n~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~------~--------------g~~~l~~r 554 (1614)
+. .+..+...|.++++.|.+.+. .+......+..||+|+|-+.. + -+..+.|.
T Consensus 677 ek------a~~~v~~~Ll~~l~~g~l~d~-~g~~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pe 749 (852)
T TIGR03346 677 EK------AHPDVFNVLLQVLDDGRLTDG-QGRTVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPE 749 (852)
T ss_pred cc------CCHHHHHHHHHHHhcCceecC-CCeEEecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHH
Confidence 98 566688999999999887764 456677778889999997431 0 12335677
Q ss_pred cccccc-EEEecCCChhHHHHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHHHhhcCCCCCCcc--ccChhhHHHHh
Q psy568 555 FLRHVP-VIYVDYPGETSLKQIYGTFSRAMLRLIPPLRGYADALTNAMVELYLASQEKFTQDMQPHY--VYSPREMTRWV 631 (1614)
Q Consensus 555 ~~r~f~-~i~i~~p~~~~l~~I~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~hY--~F~lRdl~~v~ 631 (1614)
|+.|+. ++.+.+++.+++..|....+..+...... .++.-.+.....+ .+... +| .++.|.|.+++
T Consensus 750 l~~Rid~IivF~PL~~e~l~~I~~l~L~~l~~~l~~-~~~~l~i~~~a~~---~L~~~-------~~~~~~gaR~L~~~i 818 (852)
T TIGR03346 750 FLNRIDEIVVFHPLGREQIARIVEIQLGRLRKRLAE-RKITLELSDAALD---FLAEA-------GYDPVYGARPLKRAI 818 (852)
T ss_pred HhcCcCeEEecCCcCHHHHHHHHHHHHHHHHHHHHH-CCCeecCCHHHHH---HHHHh-------CCCCCCCchhHHHHH
Confidence 888885 77888999999999987766543221110 0111111111111 11111 34 68999999999
Q ss_pred hhhhc
Q psy568 632 RGICE 636 (1614)
Q Consensus 632 ~~i~~ 636 (1614)
+..+.
T Consensus 819 ~~~i~ 823 (852)
T TIGR03346 819 QREIE 823 (852)
T ss_pred HHHHH
Confidence 87664
No 77
>KOG2004|consensus
Probab=98.69 E-value=7.6e-08 Score=116.22 Aligned_cols=198 Identities=20% Similarity=0.218 Sum_probs=130.7
Q ss_pred cCCCEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCCHHHHHhHhhcccceeecCCccccccccCC--ceEEEEec
Q psy568 415 EHKPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTPELLLKTFDHYCEYRKTPNGVILSPIQLG--KWLVLFCD 492 (1614)
Q Consensus 415 ~~~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~~~~l~~~~~~~~~~~~~~~g~~~~p~~~g--k~~vlfiD 492 (1614)
.|+=+.++||||+|||++.+.+++.+ +..++++.....++..++.|.=..+... -.|++..+.+.- ..-++.||
T Consensus 437 qGkIlCf~GPPGVGKTSI~kSIA~AL-nRkFfRfSvGG~tDvAeIkGHRRTYVGA---MPGkiIq~LK~v~t~NPliLiD 512 (906)
T KOG2004|consen 437 QGKILCFVGPPGVGKTSIAKSIARAL-NRKFFRFSVGGMTDVAEIKGHRRTYVGA---MPGKIIQCLKKVKTENPLILID 512 (906)
T ss_pred CCcEEEEeCCCCCCcccHHHHHHHHh-CCceEEEeccccccHHhhcccceeeecc---CChHHHHHHHhhCCCCceEEee
Confidence 35667899999999999999999998 8889999999999998887653221111 124333221110 12466679
Q ss_pred cCCCCCccccCcccHHHHHHHHHHc---CceeeCCCCceEeecCeEEEEeecCCCCCCCCCCcccccccccEEEecCCCh
Q psy568 493 EINLPDMDKYATQRVISFLRQLIEQ---RGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLRHVPVIYVDYPGE 569 (1614)
Q Consensus 493 din~p~~d~~g~q~~lelLrqlld~---~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r~f~~i~i~~p~~ 569 (1614)
|++....+.-| .|-..|..++|- ..|.|.--.....+..+.||||.|... .+|+.|+.|+-+|.++-...
T Consensus 513 EvDKlG~g~qG--DPasALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~id-----tIP~pLlDRMEvIelsGYv~ 585 (906)
T KOG2004|consen 513 EVDKLGSGHQG--DPASALLELLDPEQNANFLDHYLDVPVDLSKVLFICTANVID-----TIPPPLLDRMEVIELSGYVA 585 (906)
T ss_pred hhhhhCCCCCC--ChHHHHHHhcChhhccchhhhccccccchhheEEEEeccccc-----cCChhhhhhhheeeccCccH
Confidence 99987644223 344455566653 224443333445667899999999875 79999999999999999999
Q ss_pred hHHHHHHHHHHHhhh----hcchhhhhhHHHHHHHHHHHHHHHHhhcCCCCCCccccChhhHHHHhhhhhc
Q psy568 570 TSLKQIYGTFSRAML----RLIPPLRGYADALTNAMVELYLASQEKFTQDMQPHYVYSPREMTRWVRGICE 636 (1614)
Q Consensus 570 ~~l~~I~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~hY~F~lRdl~~v~~~i~~ 636 (1614)
++-.+|...++-.-. .+.+...++.+..+.++++-|-+= =+.|.|.|-+..+++
T Consensus 586 eEKv~IA~~yLip~a~~~~gl~~e~v~is~~al~~lI~~YcrE-------------aGVRnLqk~iekI~R 643 (906)
T KOG2004|consen 586 EEKVKIAERYLIPQALKDCGLKPEQVKISDDALLALIERYCRE-------------AGVRNLQKQIEKICR 643 (906)
T ss_pred HHHHHHHHHhhhhHHHHHcCCCHHhcCccHHHHHHHHHHHHHH-------------HhHHHHHHHHHHHHH
Confidence 999999776543221 133444455566566666555221 156666666665555
No 78
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.67 E-value=1.6e-07 Score=113.00 Aligned_cols=158 Identities=16% Similarity=0.168 Sum_probs=94.4
Q ss_pred HHHHHHHHHhcCCCEEEecCCCCchHHHHHHHHhcCCCC-ceEEEEcccCCCHHHHHhHhhcccceeecCCcccc----c
Q psy568 405 HESLLYTWLAEHKPLVLCGPPGSGKTMTLLSALRALPDM-EVVSLNFSSATTPELLLKTFDHYCEYRKTPNGVIL----S 479 (1614)
Q Consensus 405 ~~~ll~~~l~~~~~vLL~Gp~GtGKT~lv~~~~~~l~~~-~~~~i~~s~~t~~~~l~~~~~~~~~~~~~~~g~~~----~ 479 (1614)
...++...+.+|.||||.||||||||++++.+....... ++..+.+.- +++.++.|.+.-...+. .|.+. +
T Consensus 28 vI~lll~aalag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~f-ttp~DLfG~l~i~~~~~---~g~f~r~~~G 103 (498)
T PRK13531 28 AIRLCLLAALSGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRF-STPEEVFGPLSIQALKD---EGRYQRLTSG 103 (498)
T ss_pred HHHHHHHHHccCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeee-cCcHHhcCcHHHhhhhh---cCchhhhcCC
Confidence 444666778899999999999999999999888765322 333222221 24566666431111000 12221 1
Q ss_pred cccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCCCcccccccc
Q psy568 480 PIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLRHV 559 (1614)
Q Consensus 480 p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r~f 559 (1614)
|.. .--++|+||||. .+..+...|-..++.+.++. ++....++.-.+++|+|+... ....-++++.||
T Consensus 104 ~L~--~A~lLfLDEI~r------asp~~QsaLLeam~Er~~t~--g~~~~~lp~rfiv~ATN~LPE--~g~~leAL~DRF 171 (498)
T PRK13531 104 YLP--EAEIVFLDEIWK------AGPAILNTLLTAINERRFRN--GAHEEKIPMRLLVTASNELPE--ADSSLEALYDRM 171 (498)
T ss_pred ccc--cccEEeeccccc------CCHHHHHHHHHHHHhCeEec--CCeEEeCCCcEEEEECCCCcc--cCCchHHhHhhE
Confidence 110 112899999997 55567777888888888775 344445544444555575431 123334677777
Q ss_pred c-EEEecCCCh-hHHHHHHHH
Q psy568 560 P-VIYVDYPGE-TSLKQIYGT 578 (1614)
Q Consensus 560 ~-~i~i~~p~~-~~l~~I~~~ 578 (1614)
. .+.+++|+. ++...|+..
T Consensus 172 liri~vp~l~~~~~e~~lL~~ 192 (498)
T PRK13531 172 LIRLWLDKVQDKANFRSMLTS 192 (498)
T ss_pred EEEEECCCCCchHHHHHHHHc
Confidence 5 478888974 555666543
No 79
>KOG0652|consensus
Probab=98.67 E-value=3.7e-08 Score=104.60 Aligned_cols=150 Identities=21% Similarity=0.302 Sum_probs=95.8
Q ss_pred HHHHHHhcCCCEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCCHHHHHhHhhcccceeecCCccccccccCCceE
Q psy568 408 LLYTWLAEHKPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTPELLLKTFDHYCEYRKTPNGVILSPIQLGKWL 487 (1614)
Q Consensus 408 ll~~~l~~~~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~~~~l~~~~~~~~~~~~~~~g~~~~p~~~gk~~ 487 (1614)
+-++-+...+.||++||||||||.+++.+++.. +..+. .-..|..+|..+..-..-.+ ..+ .-++...+.
T Consensus 197 F~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT-~aTFL-----KLAgPQLVQMfIGdGAkLVR---DAF-aLAKEkaP~ 266 (424)
T KOG0652|consen 197 FENLGIRPPKGVLMYGPPGTGKTLMARACAAQT-NATFL-----KLAGPQLVQMFIGDGAKLVR---DAF-ALAKEKAPT 266 (424)
T ss_pred HHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhc-cchHH-----HhcchHHHhhhhcchHHHHH---HHH-HHhhccCCe
Confidence 334566778999999999999999998888754 22221 22344445444421000000 111 112345679
Q ss_pred EEEeccCCCCCcc-----ccCcc----cHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCCCcccccc-
Q psy568 488 VLFCDEINLPDMD-----KYATQ----RVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLR- 557 (1614)
Q Consensus 488 vlfiDdin~p~~d-----~~g~q----~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r- 557 (1614)
|+||||++-.... +-|.. ..+|+|.|+- ||... .++.+|||+|... -|+|+++|
T Consensus 267 IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLD---GFss~--------~~vKviAATNRvD-----iLDPALlRS 330 (424)
T KOG0652|consen 267 IIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLD---GFSSD--------DRVKVIAATNRVD-----ILDPALLRS 330 (424)
T ss_pred EEEEechhhhccccccccccccHHHHHHHHHHHHhhc---CCCCc--------cceEEEeeccccc-----ccCHHHhhc
Confidence 9999999965433 33432 3577777772 33322 3688999999875 68888886
Q ss_pred --cccEEEecCCChhHHHHHHHHHHHhh
Q psy568 558 --HVPVIYVDYPGETSLKQIYGTFSRAM 583 (1614)
Q Consensus 558 --~f~~i~i~~p~~~~l~~I~~~~~~~~ 583 (1614)
.=+-|.+|.|+++...+|++...+.+
T Consensus 331 GRLDRKIEfP~Pne~aRarIlQIHsRKM 358 (424)
T KOG0652|consen 331 GRLDRKIEFPHPNEEARARILQIHSRKM 358 (424)
T ss_pred ccccccccCCCCChHHHHHHHHHhhhhc
Confidence 34468999999999999977655443
No 80
>KOG0739|consensus
Probab=98.66 E-value=2.6e-08 Score=108.08 Aligned_cols=140 Identities=21% Similarity=0.300 Sum_probs=91.3
Q ss_pred CCEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCCHHHHHhHhhcccceeecCCccccccccCCceEEEEeccCCC
Q psy568 417 KPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTPELLLKTFDHYCEYRKTPNGVILSPIQLGKWLVLFCDEINL 496 (1614)
Q Consensus 417 ~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~~~~l~~~~~~~~~~~~~~~g~~~~p~~~gk~~vlfiDdin~ 496 (1614)
+.+||+||||||||.+++.++..- +..++.+. ++++.....+..++-. ..++.-++..++.|||||||+.
T Consensus 167 rgiLLyGPPGTGKSYLAKAVATEA-nSTFFSvS------SSDLvSKWmGESEkLV---knLFemARe~kPSIIFiDEiDs 236 (439)
T KOG0739|consen 167 RGILLYGPPGTGKSYLAKAVATEA-NSTFFSVS------SSDLVSKWMGESEKLV---KNLFEMARENKPSIIFIDEIDS 236 (439)
T ss_pred eeEEEeCCCCCcHHHHHHHHHhhc-CCceEEee------hHHHHHHHhccHHHHH---HHHHHHHHhcCCcEEEeehhhh
Confidence 579999999999999999888655 44444442 3445444444333221 1122233457789999999995
Q ss_pred CCcccc-C----ccc-HHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCCCccccccccc-EEEecCCCh
Q psy568 497 PDMDKY-A----TQR-VISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLRHVP-VIYVDYPGE 569 (1614)
Q Consensus 497 p~~d~~-g----~q~-~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r~f~-~i~i~~p~~ 569 (1614)
.-.... + +.. --|+|=|+ .|+-... ..+.++||+|.|. .|+.+..|||- .|+||.|..
T Consensus 237 lcg~r~enEseasRRIKTEfLVQM---qGVG~d~-------~gvLVLgATNiPw-----~LDsAIRRRFekRIYIPLPe~ 301 (439)
T KOG0739|consen 237 LCGSRSENESEASRRIKTEFLVQM---QGVGNDN-------DGVLVLGATNIPW-----VLDSAIRRRFEKRIYIPLPEA 301 (439)
T ss_pred hccCCCCCchHHHHHHHHHHHHhh---hccccCC-------CceEEEecCCCch-----hHHHHHHHHhhcceeccCCcH
Confidence 322111 1 111 13444444 3333222 3588899999997 79999999998 899999999
Q ss_pred hHHHHHHHHHHH
Q psy568 570 TSLKQIYGTFSR 581 (1614)
Q Consensus 570 ~~l~~I~~~~~~ 581 (1614)
.....+|...+.
T Consensus 302 ~AR~~MF~lhlG 313 (439)
T KOG0739|consen 302 HARARMFKLHLG 313 (439)
T ss_pred HHhhhhheeccC
Confidence 998888765443
No 81
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.66 E-value=1.1e-07 Score=115.36 Aligned_cols=145 Identities=22% Similarity=0.289 Sum_probs=86.6
Q ss_pred CCCEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCCHHHHHhHhhcccceeecCCccccccccCCceEEEEeccCC
Q psy568 416 HKPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTPELLLKTFDHYCEYRKTPNGVILSPIQLGKWLVLFCDEIN 495 (1614)
Q Consensus 416 ~~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~~~~l~~~~~~~~~~~~~~~g~~~~p~~~gk~~vlfiDdin 495 (1614)
.+++||+||||||||++++.++..+ +..++.+..+. +...+.+...... ...+.-+......|+||||++
T Consensus 156 p~gvLL~GppGtGKT~lakaia~~l-~~~~~~v~~~~------l~~~~~g~~~~~i---~~~f~~a~~~~p~il~iDEiD 225 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLAKAVAHET-NATFIRVVGSE------LVRKYIGEGARLV---REIFELAKEKAPSIIFIDEID 225 (364)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhC-CCCEEecchHH------HHHHhhhHHHHHH---HHHHHHHHhcCCcEEEhhhhh
Confidence 5679999999999999999998877 44555543321 1111111000000 001111112345799999999
Q ss_pred CCCccc-----cCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCCCcccccc--ccc-EEEecCC
Q psy568 496 LPDMDK-----YATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLR--HVP-VIYVDYP 567 (1614)
Q Consensus 496 ~p~~d~-----~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r--~f~-~i~i~~p 567 (1614)
...... .+.......+.+++..-.-++. ..++.+|+|+|.+. .++++++| ||. .+.++.|
T Consensus 226 ~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~-------~~~v~vI~ttn~~~-----~ld~al~r~grfd~~i~v~~P 293 (364)
T TIGR01242 226 AIAAKRTDSGTSGDREVQRTLMQLLAELDGFDP-------RGNVKVIAATNRPD-----ILDPALLRPGRFDRIIEVPLP 293 (364)
T ss_pred hhccccccCCCCccHHHHHHHHHHHHHhhCCCC-------CCCEEEEEecCChh-----hCChhhcCcccCceEEEeCCc
Confidence 643221 1222333444455433111211 13688999999875 68888886 665 7899999
Q ss_pred ChhHHHHHHHHHHHh
Q psy568 568 GETSLKQIYGTFSRA 582 (1614)
Q Consensus 568 ~~~~l~~I~~~~~~~ 582 (1614)
+.++...|++.+...
T Consensus 294 ~~~~r~~Il~~~~~~ 308 (364)
T TIGR01242 294 DFEGRLEILKIHTRK 308 (364)
T ss_pred CHHHHHHHHHHHHhc
Confidence 999999998766543
No 82
>KOG0737|consensus
Probab=98.65 E-value=1.8e-08 Score=114.14 Aligned_cols=153 Identities=19% Similarity=0.270 Sum_probs=98.9
Q ss_pred HHHHhcCCCEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCCHHHHHhHhhcccceeecCCccccccccCCceEEE
Q psy568 410 YTWLAEHKPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTPELLLKTFDHYCEYRKTPNGVILSPIQLGKWLVL 489 (1614)
Q Consensus 410 ~~~l~~~~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~~~~l~~~~~~~~~~~~~~~g~~~~p~~~gk~~vl 489 (1614)
-.++...++|||.||||||||.+++..++.. +..++.+..|.-|+- -+ |.=+ ++. +..+.-|. .=+++++
T Consensus 121 g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akea-ga~fInv~~s~lt~K-Wf-gE~e-Klv-----~AvFslAs-Kl~P~iI 190 (386)
T KOG0737|consen 121 GKLLRPPKGILLYGPPGTGKTMLAKAIAKEA-GANFINVSVSNLTSK-WF-GEAQ-KLV-----KAVFSLAS-KLQPSII 190 (386)
T ss_pred cccccCCccceecCCCCchHHHHHHHHHHHc-CCCcceeeccccchh-hH-HHHH-HHH-----HHHHhhhh-hcCccee
Confidence 3455678999999999999999999888776 778888888877762 11 0000 000 12222222 2345899
Q ss_pred EeccCCCCCccc-cCcccH-HHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCCCccccccccc-EEEecC
Q psy568 490 FCDEINLPDMDK-YATQRV-ISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLRHVP-VIYVDY 566 (1614)
Q Consensus 490 fiDdin~p~~d~-~g~q~~-lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r~f~-~i~i~~ 566 (1614)
||||++.--..+ .+.-.+ --.=+|+|. .||. .....-..+.+.||+|.|- +++.+..||+. .++++.
T Consensus 191 FIDEvds~L~~R~s~dHEa~a~mK~eFM~---~WDG--l~s~~~~rVlVlgATNRP~-----DlDeAiiRR~p~rf~V~l 260 (386)
T KOG0737|consen 191 FIDEVDSFLGQRRSTDHEATAMMKNEFMA---LWDG--LSSKDSERVLVLGATNRPF-----DLDEAIIRRLPRRFHVGL 260 (386)
T ss_pred ehhhHHHHHhhcccchHHHHHHHHHHHHH---Hhcc--ccCCCCceEEEEeCCCCCc-----cHHHHHHHhCcceeeeCC
Confidence 999999522221 011111 112234444 2331 1111223488899999985 79999999987 899999
Q ss_pred CChhHHHHHHHHHHHh
Q psy568 567 PGETSLKQIYGTFSRA 582 (1614)
Q Consensus 567 p~~~~l~~I~~~~~~~ 582 (1614)
|+..+..+|++.++..
T Consensus 261 P~~~qR~kILkviLk~ 276 (386)
T KOG0737|consen 261 PDAEQRRKILKVILKK 276 (386)
T ss_pred CchhhHHHHHHHHhcc
Confidence 9999999999888763
No 83
>PLN03025 replication factor C subunit; Provisional
Probab=98.65 E-value=2.2e-07 Score=110.74 Aligned_cols=166 Identities=21% Similarity=0.336 Sum_probs=105.7
Q ss_pred ecCCCCccccccccccCCcceeeeCcchhhHHHHHHHHHhcC--CCEEEecCCCCchHHHHHHHHhcCCC----CceEEE
Q psy568 375 PWSNKVPQIEVETQKVAASDVVVPTLDTVRHESLLYTWLAEH--KPLVLCGPPGSGKTMTLLSALRALPD----MEVVSL 448 (1614)
Q Consensus 375 ~w~~~~~~~~~~~~~~~~~~~~vpT~~t~r~~~ll~~~l~~~--~~vLL~Gp~GtGKT~lv~~~~~~l~~----~~~~~i 448 (1614)
||.+++.+..++ -++...+... .+..++..+ .|+||+||||||||+++..+++.+.+ ..++.+
T Consensus 2 ~w~~kyrP~~l~--------~~~g~~~~~~---~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~el 70 (319)
T PLN03025 2 PWVEKYRPTKLD--------DIVGNEDAVS---RLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLEL 70 (319)
T ss_pred ChhhhcCCCCHH--------HhcCcHHHHH---HHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeee
Confidence 688776443332 2333333222 344455544 57999999999999999999887633 235566
Q ss_pred EcccCCCHHHHHhHhhcccceeecCCccccccccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCce
Q psy568 449 NFSSATTPELLLKTFDHYCEYRKTPNGVILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQW 528 (1614)
Q Consensus 449 ~~s~~t~~~~l~~~~~~~~~~~~~~~g~~~~p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~ 528 (1614)
|-|...+.+.++..+....... .... .|++-|++|||++.-.. .....|+..++. |.
T Consensus 71 n~sd~~~~~~vr~~i~~~~~~~-----~~~~---~~~~kviiiDE~d~lt~------~aq~aL~~~lE~---~~------ 127 (319)
T PLN03025 71 NASDDRGIDVVRNKIKMFAQKK-----VTLP---PGRHKIVILDEADSMTS------GAQQALRRTMEI---YS------ 127 (319)
T ss_pred cccccccHHHHHHHHHHHHhcc-----ccCC---CCCeEEEEEechhhcCH------HHHHHHHHHHhc---cc------
Confidence 6665556556655554322111 0111 24567888999998433 344566777763 21
Q ss_pred EeecCeEEEEeecCCCCCCCCCCcccccccccEEEecCCChhHHHHHHHHHHHh
Q psy568 529 VSLERIQCVGACNPPTDPGRKPLSHRFLRHVPVIYVDYPGETSLKQIYGTFSRA 582 (1614)
Q Consensus 529 ~~~~~~~~iaa~n~~~~~g~~~l~~r~~r~f~~i~i~~p~~~~l~~I~~~~~~~ 582 (1614)
....||.++|.+. .+.+.+.+|+.++.++.|+.+++...+..++..
T Consensus 128 ---~~t~~il~~n~~~-----~i~~~L~SRc~~i~f~~l~~~~l~~~L~~i~~~ 173 (319)
T PLN03025 128 ---NTTRFALACNTSS-----KIIEPIQSRCAIVRFSRLSDQEILGRLMKVVEA 173 (319)
T ss_pred ---CCceEEEEeCCcc-----ccchhHHHhhhcccCCCCCHHHHHHHHHHHHHH
Confidence 1345777887653 577889999999999999999999887776553
No 84
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=98.64 E-value=2.8e-08 Score=120.54 Aligned_cols=140 Identities=23% Similarity=0.376 Sum_probs=88.7
Q ss_pred cCCCEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCC------HHHHHhHhhcccceeecCCccccccccCCceEE
Q psy568 415 EHKPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATT------PELLLKTFDHYCEYRKTPNGVILSPIQLGKWLV 488 (1614)
Q Consensus 415 ~~~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~------~~~l~~~~~~~~~~~~~~~g~~~~p~~~gk~~v 488 (1614)
.+..+||+||||||||++++.++..+ +..++.+..+...+ +..+...|. -+..+.++|
T Consensus 216 ~p~gVLL~GPPGTGKT~LAraIA~el-~~~fi~V~~seL~~k~~Ge~~~~vr~lF~---------------~A~~~~P~I 279 (438)
T PTZ00361 216 PPKGVILYGPPGTGKTLLAKAVANET-SATFLRVVGSELIQKYLGDGPKLVRELFR---------------VAEENAPSI 279 (438)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh-CCCEEEEecchhhhhhcchHHHHHHHHHH---------------HHHhCCCcE
Confidence 45789999999999999999988876 55566665543221 111111111 111345689
Q ss_pred EEeccCCCCCcccc-----CcccHHHHHHHHHHc-CceeeCCCCceEeecCeEEEEeecCCCCCCCCCCcccccc--ccc
Q psy568 489 LFCDEINLPDMDKY-----ATQRVISFLRQLIEQ-RGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLR--HVP 560 (1614)
Q Consensus 489 lfiDdin~p~~d~~-----g~q~~lelLrqlld~-~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r--~f~ 560 (1614)
+||||++....... |...+...+.+++.. .|+ + ...++.+|+|+|.+. .++++++| ||.
T Consensus 280 LfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~-~-------~~~~V~VI~ATNr~d-----~LDpaLlRpGRfd 346 (438)
T PTZ00361 280 VFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGF-D-------SRGDVKVIMATNRIE-----SLDPALIRPGRID 346 (438)
T ss_pred EeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhh-c-------ccCCeEEEEecCChH-----HhhHHhccCCeeE
Confidence 99999986432221 222232333333322 121 1 113688999999875 68999886 665
Q ss_pred -EEEecCCChhHHHHHHHHHHHhh
Q psy568 561 -VIYVDYPGETSLKQIYGTFSRAM 583 (1614)
Q Consensus 561 -~i~i~~p~~~~l~~I~~~~~~~~ 583 (1614)
.|.++.|+.++...|++.++..+
T Consensus 347 ~~I~~~~Pd~~~R~~Il~~~~~k~ 370 (438)
T PTZ00361 347 RKIEFPNPDEKTKRRIFEIHTSKM 370 (438)
T ss_pred EEEEeCCCCHHHHHHHHHHHHhcC
Confidence 79999999999999998766543
No 85
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.63 E-value=1.4e-07 Score=112.24 Aligned_cols=136 Identities=21% Similarity=0.236 Sum_probs=92.3
Q ss_pred CCEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCCHHHHHhHhhcccceeecCCccccccccCCceEEEEeccCCC
Q psy568 417 KPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTPELLLKTFDHYCEYRKTPNGVILSPIQLGKWLVLFCDEINL 496 (1614)
Q Consensus 417 ~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~~~~l~~~~~~~~~~~~~~~g~~~~p~~~gk~~vlfiDdin~ 496 (1614)
.+++|+||||||||++++.+++.+ +..+..+..+.......+.+.+.. .+...++||||++.
T Consensus 31 ~~~ll~Gp~G~GKT~la~~ia~~~-~~~~~~~~~~~~~~~~~l~~~l~~-----------------~~~~~vl~iDEi~~ 92 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLAHIIANEM-GVNLKITSGPALEKPGDLAAILTN-----------------LEEGDVLFIDEIHR 92 (305)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh-CCCEEEeccchhcCchhHHHHHHh-----------------cccCCEEEEehHhh
Confidence 569999999999999999998877 344444444333344444443321 12235889999997
Q ss_pred CCccccCcccHHHHHHHHHHcCcee---eC--CCCce-EeecCeEEEEeecCCCCCCCCCCccccccccc-EEEecCCCh
Q psy568 497 PDMDKYATQRVISFLRQLIEQRGFY---RP--ADKQW-VSLERIQCVGACNPPTDPGRKPLSHRFLRHVP-VIYVDYPGE 569 (1614)
Q Consensus 497 p~~d~~g~q~~lelLrqlld~~~~~---~~--~~~~~-~~~~~~~~iaa~n~~~~~g~~~l~~r~~r~f~-~i~i~~p~~ 569 (1614)
... ...+.|+.+++.++.. +. ....+ ...+.+.+|++++.+. .+++++.+||. ++.++.++.
T Consensus 93 l~~------~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~-----~l~~~l~sR~~~~~~l~~l~~ 161 (305)
T TIGR00635 93 LSP------AVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAG-----MLTSPLRDRFGIILRLEFYTV 161 (305)
T ss_pred hCH------HHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCcc-----ccCHHHHhhcceEEEeCCCCH
Confidence 433 3568888888876521 11 01112 2345688899888764 57888988985 578999999
Q ss_pred hHHHHHHHHHHH
Q psy568 570 TSLKQIYGTFSR 581 (1614)
Q Consensus 570 ~~l~~I~~~~~~ 581 (1614)
+++..|+.....
T Consensus 162 ~e~~~il~~~~~ 173 (305)
T TIGR00635 162 EELAEIVSRSAG 173 (305)
T ss_pred HHHHHHHHHHHH
Confidence 999999876654
No 86
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=6.6e-08 Score=122.75 Aligned_cols=148 Identities=22% Similarity=0.248 Sum_probs=93.5
Q ss_pred HhcCCCEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCCHHHHHhHhhcccceeecCCccccccccCCceEEEEec
Q psy568 413 LAEHKPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTPELLLKTFDHYCEYRKTPNGVILSPIQLGKWLVLFCD 492 (1614)
Q Consensus 413 l~~~~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~~~~l~~~~~~~~~~~~~~~g~~~~p~~~gk~~vlfiD 492 (1614)
+...+.+||+||||||||+++++++... +.+++.+..+..++ .+-+..++.- ...+-. +.....+|+|||
T Consensus 273 ~~~~~giLl~GpPGtGKT~lAkava~~~-~~~fi~v~~~~l~s------k~vGesek~i--r~~F~~-A~~~~p~iiFiD 342 (494)
T COG0464 273 LRPPKGVLLYGPPGTGKTLLAKAVALES-RSRFISVKGSELLS------KWVGESEKNI--RELFEK-ARKLAPSIIFID 342 (494)
T ss_pred CCCCCeeEEECCCCCCHHHHHHHHHhhC-CCeEEEeeCHHHhc------cccchHHHHH--HHHHHH-HHcCCCcEEEEE
Confidence 4456789999999999999999888865 66777776653332 1111111110 001111 123456999999
Q ss_pred cCCCCCccccCc-cc-HHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCCCcccccc--ccc-EEEecCC
Q psy568 493 EINLPDMDKYAT-QR-VISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLR--HVP-VIYVDYP 567 (1614)
Q Consensus 493 din~p~~d~~g~-q~-~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r--~f~-~i~i~~p 567 (1614)
|++.-....-.+ .. ....+.+++....-. ....++.+|||+|.|. .++++++| ||. +++++.|
T Consensus 343 EiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~-------e~~~~v~vi~aTN~p~-----~ld~a~lR~gRfd~~i~v~~p 410 (494)
T COG0464 343 EIDSLASGRGPSEDGSGRRVVGQLLTELDGI-------EKAEGVLVIAATNRPD-----DLDPALLRPGRFDRLIYVPLP 410 (494)
T ss_pred chhhhhccCCCCCchHHHHHHHHHHHHhcCC-------CccCceEEEecCCCcc-----ccCHhhcccCccceEeecCCC
Confidence 999644432111 10 112333333221101 1123588999999987 79999999 998 8999999
Q ss_pred ChhHHHHHHHHHHHh
Q psy568 568 GETSLKQIYGTFSRA 582 (1614)
Q Consensus 568 ~~~~l~~I~~~~~~~ 582 (1614)
+.++...||...+..
T Consensus 411 d~~~r~~i~~~~~~~ 425 (494)
T COG0464 411 DLEERLEIFKIHLRD 425 (494)
T ss_pred CHHHHHHHHHHHhcc
Confidence 999999999887663
No 87
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.62 E-value=1.3e-07 Score=116.52 Aligned_cols=139 Identities=20% Similarity=0.235 Sum_probs=92.9
Q ss_pred HHHHHHhcC--CCEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCCHHHHHhHhhcccceeecCCccccccccCCc
Q psy568 408 LLYTWLAEH--KPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTPELLLKTFDHYCEYRKTPNGVILSPIQLGK 485 (1614)
Q Consensus 408 ll~~~l~~~--~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~~~~l~~~~~~~~~~~~~~~g~~~~p~~~gk 485 (1614)
.+..++..+ .+++|+||||||||++++.+++.. +..++.++.+.. +...+...++..... + ..|+
T Consensus 26 ~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~-~~~~~~l~a~~~-~~~~ir~ii~~~~~~----------~-~~g~ 92 (413)
T PRK13342 26 PLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGAT-DAPFEALSAVTS-GVKDLREVIEEARQR----------R-SAGR 92 (413)
T ss_pred HHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHh-CCCEEEEecccc-cHHHHHHHHHHHHHh----------h-hcCC
Confidence 344555554 479999999999999999888776 556666666532 334444444321110 0 1345
Q ss_pred eEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCCCcccccccccEEEec
Q psy568 486 WLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLRHVPVIYVD 565 (1614)
Q Consensus 486 ~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r~f~~i~i~ 565 (1614)
..|+||||++.-. ....+.|...++.+ .+.+|++++.. ....+++++.+||.++.++
T Consensus 93 ~~vL~IDEi~~l~------~~~q~~LL~~le~~--------------~iilI~att~n---~~~~l~~aL~SR~~~~~~~ 149 (413)
T PRK13342 93 RTILFIDEIHRFN------KAQQDALLPHVEDG--------------TITLIGATTEN---PSFEVNPALLSRAQVFELK 149 (413)
T ss_pred ceEEEEechhhhC------HHHHHHHHHHhhcC--------------cEEEEEeCCCC---hhhhccHHHhccceeeEeC
Confidence 6889999999733 23445666666643 24566665432 1246889999999999999
Q ss_pred CCChhHHHHHHHHHHHh
Q psy568 566 YPGETSLKQIYGTFSRA 582 (1614)
Q Consensus 566 ~p~~~~l~~I~~~~~~~ 582 (1614)
.++.+++..++...+..
T Consensus 150 ~ls~e~i~~lL~~~l~~ 166 (413)
T PRK13342 150 PLSEEDIEQLLKRALED 166 (413)
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999998876553
No 88
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=98.62 E-value=2.1e-08 Score=106.90 Aligned_cols=120 Identities=19% Similarity=0.182 Sum_probs=80.5
Q ss_pred CCEEEecCCCCchHHHHHHHHhcCC---CCceEEEEcccCCCHHHHHhHhhcccceeecCCccccccccCCceEEEEecc
Q psy568 417 KPLVLCGPPGSGKTMTLLSALRALP---DMEVVSLNFSSATTPELLLKTFDHYCEYRKTPNGVILSPIQLGKWLVLFCDE 493 (1614)
Q Consensus 417 ~~vLL~Gp~GtGKT~lv~~~~~~l~---~~~~~~i~~s~~t~~~~l~~~~~~~~~~~~~~~g~~~~p~~~gk~~vlfiDd 493 (1614)
..+||+||+|||||.+++.+++.+. ..+++.++++..++..+....+...... ..|... .. ...|+|+||
T Consensus 4 ~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~~~~~~~~~l~~~---~~~~v~-~~---~~gVVllDE 76 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGDDVESSVSKLLGS---PPGYVG-AE---EGGVVLLDE 76 (171)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHHHCSCHCHHHHHH---TTCHHH-HH---HHTEEEEET
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccchHHhhhhhhhhc---ccceee-cc---chhhhhhHH
Confidence 3589999999999999999998774 2478999999888833322222111100 012111 11 112889999
Q ss_pred CCCCCccc-c----CcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCC
Q psy568 494 INLPDMDK-Y----ATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPT 544 (1614)
Q Consensus 494 in~p~~d~-~----g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~ 544 (1614)
|+...+.. . ....+...|.+++|.|.+.+. .+......++.||+|+|-..
T Consensus 77 idKa~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~-~g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 77 IDKAHPSNSGGADVSGEGVQNSLLQLLEGGTLTDS-YGRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp GGGCSHTTTTCSHHHHHHHHHHHHHHHHHSEEEET-TCCEEEGTTEEEEEEESSST
T ss_pred HhhccccccccchhhHHHHHHHHHHHhcccceecc-cceEEEeCCceEEEeccccc
Confidence 99954410 0 012688999999998887764 34778889999999999754
No 89
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=98.60 E-value=3.3e-07 Score=115.68 Aligned_cols=187 Identities=16% Similarity=0.196 Sum_probs=111.2
Q ss_pred hcCCCEEEecCCCCchHHHHHHHHhcC---------CCCceEEEEcccC-CCH----HHHHhHhhcccce----------
Q psy568 414 AEHKPLVLCGPPGSGKTMTLLSALRAL---------PDMEVVSLNFSSA-TTP----ELLLKTFDHYCEY---------- 469 (1614)
Q Consensus 414 ~~~~~vLL~Gp~GtGKT~lv~~~~~~l---------~~~~~~~i~~s~~-t~~----~~l~~~~~~~~~~---------- 469 (1614)
....|+||+||||||||++++.+.... .+.+++.++|+.. .+. +.+.+........
T Consensus 84 ~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~ 163 (531)
T TIGR02902 84 PNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGI 163 (531)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccccccCCccccchhhcCCcccchhccccccccCCc
Confidence 356899999999999999998776421 1356788888642 222 1222211100000
Q ss_pred eecCCccccccccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCcee------eCCCCc----------eEeecC
Q psy568 470 RKTPNGVILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFY------RPADKQ----------WVSLER 533 (1614)
Q Consensus 470 ~~~~~g~~~~p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~------~~~~~~----------~~~~~~ 533 (1614)
.....|.+.. ....++||||++.. +......|..+++.+.++ +..+.. .....+
T Consensus 164 ~~~~~G~l~~----a~gG~L~IdEI~~L------~~~~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 233 (531)
T TIGR02902 164 PQPKPGAVTR----AHGGVLFIDEIGEL------HPVQMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPAD 233 (531)
T ss_pred ccccCchhhc----cCCcEEEEechhhC------CHHHHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccc
Confidence 0000122111 22368999999984 344666777777776543 221110 011247
Q ss_pred eEEEEeecCCCCCCCCCCcccccccccEEEecCCChhHHHHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHHHhhcC
Q psy568 534 IQCVGACNPPTDPGRKPLSHRFLRHVPVIYVDYPGETSLKQIYGTFSRAMLRLIPPLRGYADALTNAMVELYLASQEKFT 613 (1614)
Q Consensus 534 ~~~iaa~n~~~~~g~~~l~~r~~r~f~~i~i~~p~~~~l~~I~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 613 (1614)
+++|+|++... ..+++++.+||..+.++.++.+++..|++..++..- . .+.+...+. +.
T Consensus 234 ~rlI~ATt~~p----~~L~paLrsR~~~I~f~pL~~eei~~Il~~~a~k~~-i-----~is~~al~~-------I~---- 292 (531)
T TIGR02902 234 FRLIGATTRNP----EEIPPALRSRCVEIFFRPLLDEEIKEIAKNAAEKIG-I-----NLEKHALEL-------IV---- 292 (531)
T ss_pred eEEEEEecCCc----ccCChHHhhhhheeeCCCCCHHHHHHHHHHHHHHcC-C-----CcCHHHHHH-------HH----
Confidence 88888776432 269999999999999999999999999887665321 0 111111111 11
Q ss_pred CCCCCccccChhhHHHHhhhhhc
Q psy568 614 QDMQPHYVYSPREMTRWVRGICE 636 (1614)
Q Consensus 614 ~~~~~hY~F~lRdl~~v~~~i~~ 636 (1614)
+|.+|.|++.++++....
T Consensus 293 -----~y~~n~Rel~nll~~Aa~ 310 (531)
T TIGR02902 293 -----KYASNGREAVNIVQLAAG 310 (531)
T ss_pred -----HhhhhHHHHHHHHHHHHH
Confidence 356689999999887654
No 90
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.60 E-value=3.8e-07 Score=110.38 Aligned_cols=139 Identities=19% Similarity=0.222 Sum_probs=90.5
Q ss_pred HHHHHhcCC---CEEEecCCCCchHHHHHHHHhcCCCC-----------------------ceEEEEcccCCCHHHHHhH
Q psy568 409 LYTWLAEHK---PLVLCGPPGSGKTMTLLSALRALPDM-----------------------EVVSLNFSSATTPELLLKT 462 (1614)
Q Consensus 409 l~~~l~~~~---~vLL~Gp~GtGKT~lv~~~~~~l~~~-----------------------~~~~i~~s~~t~~~~l~~~ 462 (1614)
+..++..++ .+||+||+|||||++++.+++.+... .++.++-.+....+.+...
T Consensus 30 L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~dviEIdaas~~gVd~IReL 109 (484)
T PRK14956 30 LQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGISSDVLEIDAASNRGIENIREL 109 (484)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHccCCccceeechhhcccHHHHHHH
Confidence 455555553 37999999999999999999876321 1222222222333333332
Q ss_pred hhcccceeecCCccccccccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecC
Q psy568 463 FDHYCEYRKTPNGVILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNP 542 (1614)
Q Consensus 463 ~~~~~~~~~~~~g~~~~p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~ 542 (1614)
.+ ...+.|. .|++-|+||||+|+-.. ...+.|+..++.. ...+.||.+++.
T Consensus 110 ~e----------~l~~~p~-~g~~KV~IIDEah~Ls~------~A~NALLKtLEEP------------p~~viFILaTte 160 (484)
T PRK14956 110 RD----------NVKFAPM-GGKYKVYIIDEVHMLTD------QSFNALLKTLEEP------------PAHIVFILATTE 160 (484)
T ss_pred HH----------HHHhhhh-cCCCEEEEEechhhcCH------HHHHHHHHHhhcC------------CCceEEEeecCC
Confidence 22 1122333 46677899999999543 3455555555531 135777877765
Q ss_pred CCCCCCCCCcccccccccEEEecCCChhHHHHHHHHHHH
Q psy568 543 PTDPGRKPLSHRFLRHVPVIYVDYPGETSLKQIYGTFSR 581 (1614)
Q Consensus 543 ~~~~g~~~l~~r~~r~f~~i~i~~p~~~~l~~I~~~~~~ 581 (1614)
+. .+++++.+|+..+.+..++.+++...+..++.
T Consensus 161 ~~-----kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~ 194 (484)
T PRK14956 161 FH-----KIPETILSRCQDFIFKKVPLSVLQDYSEKLCK 194 (484)
T ss_pred hh-----hccHHHHhhhheeeecCCCHHHHHHHHHHHHH
Confidence 43 79999999999999999999998888776654
No 91
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.59 E-value=4.7e-08 Score=100.50 Aligned_cols=122 Identities=22% Similarity=0.296 Sum_probs=77.7
Q ss_pred EEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCC--HHHHHhHhhcccceeecCCccccccccCCceEEEEeccCCC
Q psy568 419 LVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATT--PELLLKTFDHYCEYRKTPNGVILSPIQLGKWLVLFCDEINL 496 (1614)
Q Consensus 419 vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~--~~~l~~~~~~~~~~~~~~~g~~~~p~~~gk~~vlfiDdin~ 496 (1614)
|||+||||||||++++.+++.+ +.+++.++++...+ .......+...+.... ..++++|+||||++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l-~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~----------~~~~~~vl~iDe~d~ 69 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL-GFPFIEIDGSELISSYAGDSEQKIRDFFKKAK----------KSAKPCVLFIDEIDK 69 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT-TSEEEEEETTHHHTSSTTHHHHHHHHHHHHHH----------HTSTSEEEEEETGGG
T ss_pred CEEECcCCCCeeHHHHHHHhhc-cccccccccccccccccccccccccccccccc----------ccccceeeeeccchh
Confidence 6899999999999999999988 77788888876542 2222223322221111 112359999999998
Q ss_pred CCccc--cC---cccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCCCccccc-cccc-EEEec
Q psy568 497 PDMDK--YA---TQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFL-RHVP-VIYVD 565 (1614)
Q Consensus 497 p~~d~--~g---~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~-r~f~-~i~i~ 565 (1614)
...+. -. .+.+++.|...++...- . ..++.+|+|+|.+. .+++++. +||. .+.++
T Consensus 70 l~~~~~~~~~~~~~~~~~~L~~~l~~~~~---~------~~~~~vI~ttn~~~-----~i~~~l~~~rf~~~i~~~ 131 (132)
T PF00004_consen 70 LFPKSQPSSSSFEQRLLNQLLSLLDNPSS---K------NSRVIVIATTNSPD-----KIDPALLRSRFDRRIEFP 131 (132)
T ss_dssp TSHHCSTSSSHHHHHHHHHHHHHHHTTTT---T------SSSEEEEEEESSGG-----GSCHHHHSTTSEEEEEE-
T ss_pred cccccccccccccccccceeeeccccccc---c------cccceeEEeeCChh-----hCCHhHHhCCCcEEEEcC
Confidence 65543 11 23345555555554211 0 23588999999764 7999998 8887 44443
No 92
>KOG0740|consensus
Probab=98.57 E-value=9.4e-08 Score=112.80 Aligned_cols=144 Identities=22% Similarity=0.259 Sum_probs=93.2
Q ss_pred CCCEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCCHHHHHhHhhcccceeecCCccccccccCCceEEEEeccCC
Q psy568 416 HKPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTPELLLKTFDHYCEYRKTPNGVILSPIQLGKWLVLFCDEIN 495 (1614)
Q Consensus 416 ~~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~~~~l~~~~~~~~~~~~~~~g~~~~p~~~gk~~vlfiDdin 495 (1614)
-+.+||.||||+|||++++.++... +-.+ ++.| ++.+-..+-+..++-. ..++.-++..+..|+||||++
T Consensus 186 ~rglLLfGPpgtGKtmL~~aiAsE~-~atf--f~iS----assLtsK~~Ge~eK~v---ralf~vAr~~qPsvifidEid 255 (428)
T KOG0740|consen 186 VRGLLLFGPPGTGKTMLAKAIATES-GATF--FNIS----ASSLTSKYVGESEKLV---RALFKVARSLQPSVIFIDEID 255 (428)
T ss_pred cchhheecCCCCchHHHHHHHHhhh-cceE--eecc----HHHhhhhccChHHHHH---HHHHHHHHhcCCeEEEechhH
Confidence 3678999999999999999888765 3333 3333 3333333322222111 112222345677899999999
Q ss_pred CCCccc------cCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCCCccccccccc-EEEecCCC
Q psy568 496 LPDMDK------YATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLRHVP-VIYVDYPG 568 (1614)
Q Consensus 496 ~p~~d~------~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r~f~-~i~i~~p~ 568 (1614)
..-..+ +...--.|+|-|+.. .-. ..-.++.+|||+|.|- .++.++.|||. ++++|.|+
T Consensus 256 slls~Rs~~e~e~srr~ktefLiq~~~---~~s------~~~drvlvigaTN~P~-----e~Dea~~Rrf~kr~yiplPd 321 (428)
T KOG0740|consen 256 SLLSKRSDNEHESSRRLKTEFLLQFDG---KNS------APDDRVLVIGATNRPW-----ELDEAARRRFVKRLYIPLPD 321 (428)
T ss_pred HHHhhcCCcccccchhhhhHHHhhhcc---ccC------CCCCeEEEEecCCCch-----HHHHHHHHHhhceeeecCCC
Confidence 642211 111223456655532 111 1112799999999986 79999999999 88999999
Q ss_pred hhHHHHHHHHHHHhh
Q psy568 569 ETSLKQIYGTFSRAM 583 (1614)
Q Consensus 569 ~~~l~~I~~~~~~~~ 583 (1614)
.++...++..++...
T Consensus 322 ~etr~~~~~~ll~~~ 336 (428)
T KOG0740|consen 322 YETRSLLWKQLLKEQ 336 (428)
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999988877654
No 93
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=98.57 E-value=5.9e-07 Score=116.12 Aligned_cols=140 Identities=22% Similarity=0.304 Sum_probs=93.6
Q ss_pred cCCCEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCC------CHHHHHhHhhcccceeecCCccccccccCCceEE
Q psy568 415 EHKPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSAT------TPELLLKTFDHYCEYRKTPNGVILSPIQLGKWLV 488 (1614)
Q Consensus 415 ~~~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t------~~~~l~~~~~~~~~~~~~~~g~~~~p~~~gk~~v 488 (1614)
..++++|+||||||||++++.++... +.+++.++.+... +...+...+.. +....++|
T Consensus 184 ~~~gill~G~~G~GKt~~~~~~a~~~-~~~f~~is~~~~~~~~~g~~~~~~~~~f~~---------------a~~~~P~I 247 (644)
T PRK10733 184 IPKGVLMVGPPGTGKTLLAKAIAGEA-KVPFFTISGSDFVEMFVGVGASRVRDMFEQ---------------AKKAAPCI 247 (644)
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHc-CCCEEEEehHHhHHhhhcccHHHHHHHHHH---------------HHhcCCcE
Confidence 35679999999999999999888776 6677777665322 22223222221 11234589
Q ss_pred EEeccCCCCCccc-----cCcccHHHHHHHHHH-cCceeeCCCCceEeecCeEEEEeecCCCCCCCCCCcccccc--ccc
Q psy568 489 LFCDEINLPDMDK-----YATQRVISFLRQLIE-QRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLR--HVP 560 (1614)
Q Consensus 489 lfiDdin~p~~d~-----~g~q~~lelLrqlld-~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r--~f~ 560 (1614)
+||||++...... -+....-..+.+++. -.|+.. ..++.+|||+|++. .++++++| ||.
T Consensus 248 ifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~--------~~~vivIaaTN~p~-----~lD~Al~RpgRfd 314 (644)
T PRK10733 248 IFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG--------NEGIIVIAATNRPD-----VLDPALLRPGRFD 314 (644)
T ss_pred EEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccC--------CCCeeEEEecCChh-----hcCHHHhCCcccc
Confidence 9999998643221 012222334455442 234433 23688999999987 69999987 785
Q ss_pred -EEEecCCChhHHHHHHHHHHHhh
Q psy568 561 -VIYVDYPGETSLKQIYGTFSRAM 583 (1614)
Q Consensus 561 -~i~i~~p~~~~l~~I~~~~~~~~ 583 (1614)
.+.++.|+.++...|+..++...
T Consensus 315 r~i~v~~Pd~~~R~~Il~~~~~~~ 338 (644)
T PRK10733 315 RQVVVGLPDVRGREQILKVHMRRV 338 (644)
T ss_pred eEEEcCCCCHHHHHHHHHHHhhcC
Confidence 88999999999999988876643
No 94
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.57 E-value=5.8e-07 Score=106.89 Aligned_cols=218 Identities=17% Similarity=0.110 Sum_probs=126.8
Q ss_pred eeeeCcchhhHHHHHHHHHhcCCCEEEecCCCCchHHHHHHHHhcCC--CCceEEEEcccCCCHHHHHhHhhccc-----
Q psy568 395 VVVPTLDTVRHESLLYTWLAEHKPLVLCGPPGSGKTMTLLSALRALP--DMEVVSLNFSSATTPELLLKTFDHYC----- 467 (1614)
Q Consensus 395 ~~vpT~~t~r~~~ll~~~l~~~~~vLL~Gp~GtGKT~lv~~~~~~l~--~~~~~~i~~s~~t~~~~l~~~~~~~~----- 467 (1614)
++-.++.+.+....+..+...+.||||+|++||||+++++.+-.... +.+++.++|..... +.+...+-+.-
T Consensus 8 liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~-~~~~~~lfg~~~~~~~ 86 (326)
T PRK11608 8 LLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNE-NLLDSELFGHEAGAFT 86 (326)
T ss_pred cEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCH-HHHHHHHccccccccC
Confidence 34445566777888888999999999999999999999887665443 56899999997543 33333221110
Q ss_pred ceeecCCccccccccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCC--
Q psy568 468 EYRKTPNGVILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTD-- 545 (1614)
Q Consensus 468 ~~~~~~~g~~~~p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~-- 545 (1614)
.......|.+..+ ....+||||++. -+....+-|..+++.+.+...... .....++++|+|++..-.
T Consensus 87 g~~~~~~g~l~~a----~gGtL~l~~i~~------L~~~~Q~~L~~~l~~~~~~~~g~~-~~~~~~~RiI~~s~~~l~~l 155 (326)
T PRK11608 87 GAQKRHPGRFERA----DGGTLFLDELAT------APMLVQEKLLRVIEYGELERVGGS-QPLQVNVRLVCATNADLPAM 155 (326)
T ss_pred CcccccCCchhcc----CCCeEEeCChhh------CCHHHHHHHHHHHhcCcEEeCCCC-ceeeccEEEEEeCchhHHHH
Confidence 0000012333222 224678899998 334466777788887664432222 222347999999886520
Q ss_pred CCCCCCcccccccccEEEecCCCh----hHHHHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHHHhhcCCCCCCccc
Q psy568 546 PGRKPLSHRFLRHVPVIYVDYPGE----TSLKQIYGTFSRAMLRLIPPLRGYADALTNAMVELYLASQEKFTQDMQPHYV 621 (1614)
Q Consensus 546 ~g~~~l~~r~~r~f~~i~i~~p~~----~~l~~I~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~hY~ 621 (1614)
.....+.+.|..+|.++.+..|.- +++..++..++..+...... .....+....+.... .-+|.
T Consensus 156 ~~~g~f~~dL~~~l~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~--~~~~~~s~~al~~L~----------~y~WP 223 (326)
T PRK11608 156 VAEGKFRADLLDRLAFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGL--PLFPGFTERARETLL----------NYRWP 223 (326)
T ss_pred HHcCCchHHHHHhcCCCEEECCChhhhhhhHHHHHHHHHHHHHHHhCC--CCCCCCCHHHHHHHH----------hCCCC
Confidence 123356677888887655555543 44555555544432111000 000011122221111 11567
Q ss_pred cChhhHHHHhhhhhc
Q psy568 622 YSPREMTRWVRGICE 636 (1614)
Q Consensus 622 F~lRdl~~v~~~i~~ 636 (1614)
-|+|+|.++++..+.
T Consensus 224 GNvrEL~~vl~~a~~ 238 (326)
T PRK11608 224 GNIRELKNVVERSVY 238 (326)
T ss_pred cHHHHHHHHHHHHHH
Confidence 799999999998764
No 95
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.57 E-value=2.8e-07 Score=118.96 Aligned_cols=140 Identities=23% Similarity=0.239 Sum_probs=89.9
Q ss_pred HHHHHHhcC--CCEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCCHHHHHhHhhcccceeecCCccccccccCCc
Q psy568 408 LLYTWLAEH--KPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTPELLLKTFDHYCEYRKTPNGVILSPIQLGK 485 (1614)
Q Consensus 408 ll~~~l~~~--~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~~~~l~~~~~~~~~~~~~~~g~~~~p~~~gk 485 (1614)
.+..++..+ .+++|+||||||||++++.+.+.. +..++.++++.. ...++...++..... . + ..++
T Consensus 42 ~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~-~~~f~~lna~~~-~i~dir~~i~~a~~~--------l-~-~~~~ 109 (725)
T PRK13341 42 LLRRAIKADRVGSLILYGPPGVGKTTLARIIANHT-RAHFSSLNAVLA-GVKDLRAEVDRAKER--------L-E-RHGK 109 (725)
T ss_pred HHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHh-cCcceeehhhhh-hhHHHHHHHHHHHHH--------h-h-hcCC
Confidence 344455544 489999999999999998888766 455666665421 222333322211000 0 0 0234
Q ss_pred eEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCCCcccccccccEEEec
Q psy568 486 WLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLRHVPVIYVD 565 (1614)
Q Consensus 486 ~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r~f~~i~i~ 565 (1614)
+.++||||+|.-.. ...+.|+..++.+ .+.+|+++++.. ...+++++.+|+.++.++
T Consensus 110 ~~IL~IDEIh~Ln~------~qQdaLL~~lE~g--------------~IiLI~aTTenp---~~~l~~aL~SR~~v~~l~ 166 (725)
T PRK13341 110 RTILFIDEVHRFNK------AQQDALLPWVENG--------------TITLIGATTENP---YFEVNKALVSRSRLFRLK 166 (725)
T ss_pred ceEEEEeChhhCCH------HHHHHHHHHhcCc--------------eEEEEEecCCCh---HhhhhhHhhccccceecC
Confidence 57899999997332 2344566666543 245676664422 246889999999999999
Q ss_pred CCChhHHHHHHHHHHHh
Q psy568 566 YPGETSLKQIYGTFSRA 582 (1614)
Q Consensus 566 ~p~~~~l~~I~~~~~~~ 582 (1614)
.++.+++..|+..++..
T Consensus 167 pLs~edi~~IL~~~l~~ 183 (725)
T PRK13341 167 SLSDEDLHQLLKRALQD 183 (725)
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999998877653
No 96
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.56 E-value=2.1e-07 Score=114.44 Aligned_cols=151 Identities=28% Similarity=0.278 Sum_probs=97.8
Q ss_pred HHHHHHhcCCCEEEecCCCCchHHHHHHHHhcCCCCc-eEEEEcccCCCHH---------------------HHHhHhhc
Q psy568 408 LLYTWLAEHKPLVLCGPPGSGKTMTLLSALRALPDME-VVSLNFSSATTPE---------------------LLLKTFDH 465 (1614)
Q Consensus 408 ll~~~l~~~~~vLL~Gp~GtGKT~lv~~~~~~l~~~~-~~~i~~s~~t~~~---------------------~l~~~~~~ 465 (1614)
-+...+..|++++++||+|||||++++.+...++... -..+..+.-.+.. ...+.+.+
T Consensus 202 al~laa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g~~~~~~~~~~rPfr~ph~~~s~~~l~GG 281 (506)
T PRK09862 202 GLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGG 281 (506)
T ss_pred hhheeccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhccccccCCcCCCCccCCCccchHHHHhCC
Confidence 3556677899999999999999999988876654321 1122222211100 01111111
Q ss_pred ccceeecCCccccccccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeC-CCCceEeecCeEEEEeecCCC
Q psy568 466 YCEYRKTPNGVILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRP-ADKQWVSLERIQCVGACNPPT 544 (1614)
Q Consensus 466 ~~~~~~~~~g~~~~p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~-~~~~~~~~~~~~~iaa~n~~~ 544 (1614)
....+ .|.+.. ....++|+||++. ....+++.|++.++.|.++.. .+.......++++||||||..
T Consensus 282 g~~~~---pG~l~~----A~gGvLfLDEi~e------~~~~~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~p 348 (506)
T PRK09862 282 GAIPG---PGEISL----AHNGVLFLDELPE------FERRTLDALREPIESGQIHLSRTRAKITYPARFQLVAAMNPSP 348 (506)
T ss_pred Cceeh---hhHhhh----ccCCEEecCCchh------CCHHHHHHHHHHHHcCcEEEecCCcceeccCCEEEEEeecCcc
Confidence 00000 122222 2347899999988 555689999999999998854 444555667999999999964
Q ss_pred CCCC-----------------CCCcccccccccE-EEecCCChhHH
Q psy568 545 DPGR-----------------KPLSHRFLRHVPV-IYVDYPGETSL 572 (1614)
Q Consensus 545 ~~g~-----------------~~l~~r~~r~f~~-i~i~~p~~~~l 572 (1614)
. |. ..++..++.||.+ +.++.|+.+.+
T Consensus 349 c-G~~~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~~~~~l 393 (506)
T PRK09862 349 T-GHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGIL 393 (506)
T ss_pred c-eecCCCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCCCCHHHH
Confidence 1 21 3588899999995 78888887643
No 97
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.56 E-value=5.4e-07 Score=106.97 Aligned_cols=212 Identities=19% Similarity=0.161 Sum_probs=123.6
Q ss_pred cchhhHHHHHHHHHhcCCCEEEecCCCCchHHHHHHHHhcC--CCCceEEEEcccCCCHHHHHhHhhcc----cc-eeec
Q psy568 400 LDTVRHESLLYTWLAEHKPLVLCGPPGSGKTMTLLSALRAL--PDMEVVSLNFSSATTPELLLKTFDHY----CE-YRKT 472 (1614)
Q Consensus 400 ~~t~r~~~ll~~~l~~~~~vLL~Gp~GtGKT~lv~~~~~~l--~~~~~~~i~~s~~t~~~~l~~~~~~~----~~-~~~~ 472 (1614)
+.+.+....+..+...+.||||.|++||||+.+++.+-... .+.+++.+||..... +.+...+-+. +. ....
T Consensus 6 ~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~-~~l~~~lfG~~~g~~~ga~~~ 84 (329)
T TIGR02974 6 NAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSE-NLLDSELFGHEAGAFTGAQKR 84 (329)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCCh-HHHHHHHhccccccccCcccc
Confidence 34556677788888999999999999999999887665433 356899999986543 3332222111 00 0001
Q ss_pred CCccccccccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCC--CCCCC
Q psy568 473 PNGVILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTD--PGRKP 550 (1614)
Q Consensus 473 ~~g~~~~p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~--~g~~~ 550 (1614)
..|.+..+ ...++|||||+. -+.....-|..+++.+.+.... .......++++|+|++..-. .....
T Consensus 85 ~~G~~~~a----~gGtL~Ldei~~------L~~~~Q~~Ll~~l~~~~~~~~g-~~~~~~~~~RiI~at~~~l~~~~~~g~ 153 (329)
T TIGR02974 85 HQGRFERA----DGGTLFLDELAT------ASLLVQEKLLRVIEYGEFERVG-GSQTLQVDVRLVCATNADLPALAAEGR 153 (329)
T ss_pred cCCchhhC----CCCEEEeCChHh------CCHHHHHHHHHHHHcCcEEecC-CCceeccceEEEEechhhHHHHhhcCc
Confidence 12333322 235688899997 3344666677788877654432 22233458999999986520 11234
Q ss_pred CcccccccccEEEecCCCh----hHHHHHHHHHHHhhhhcch-hh-hhhHHHHHHHHHHHHHHHHhhcCCCCCCccccCh
Q psy568 551 LSHRFLRHVPVIYVDYPGE----TSLKQIYGTFSRAMLRLIP-PL-RGYADALTNAMVELYLASQEKFTQDMQPHYVYSP 624 (1614)
Q Consensus 551 l~~r~~r~f~~i~i~~p~~----~~l~~I~~~~~~~~~~~~~-~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~hY~F~l 624 (1614)
+.+.|..++.++.+..|.- +++..++..++..+..... .+ ..+ ....++.. . .-+|.-|+
T Consensus 154 fr~dL~~rl~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~l----s~~a~~~L---~-------~y~WPGNv 219 (329)
T TIGR02974 154 FRADLLDRLAFDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGF----TPQAREQL---L-------EYHWPGNV 219 (329)
T ss_pred hHHHHHHHhcchhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCc----CHHHHHHH---H-------hCCCCchH
Confidence 6677888887655555543 4555555555443321100 00 111 11111111 1 11567799
Q ss_pred hhHHHHhhhhhcc
Q psy568 625 REMTRWVRGICEA 637 (1614)
Q Consensus 625 Rdl~~v~~~i~~~ 637 (1614)
|+|.++++.++..
T Consensus 220 rEL~n~i~~~~~~ 232 (329)
T TIGR02974 220 RELKNVVERSVYR 232 (329)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999887653
No 98
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=98.55 E-value=0.00085 Score=87.95 Aligned_cols=25 Identities=40% Similarity=0.547 Sum_probs=21.1
Q ss_pred cEEEeecCCCChHHHHHHHHHHc-CC
Q psy568 759 HLLLIGVSGAGKTTLSRFVAFMN-GL 783 (1614)
Q Consensus 759 h~LLvG~~GsGKtsl~rlaA~~~-~~ 783 (1614)
-.+++|+.|+||||+.+.+.+.+ |.
T Consensus 30 ~~~i~G~Ng~GKttll~ai~~~LyG~ 55 (650)
T TIGR03185 30 IILIGGLNGAGKTTLLDAIQLALYGK 55 (650)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 46788999999999999988765 54
No 99
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.51 E-value=6.7e-07 Score=110.52 Aligned_cols=140 Identities=19% Similarity=0.251 Sum_probs=90.7
Q ss_pred HHHHHHhcCC---CEEEecCCCCchHHHHHHHHhcCCCC-----------------------ceEEEEcccCCCHHHHHh
Q psy568 408 LLYTWLAEHK---PLVLCGPPGSGKTMTLLSALRALPDM-----------------------EVVSLNFSSATTPELLLK 461 (1614)
Q Consensus 408 ll~~~l~~~~---~vLL~Gp~GtGKT~lv~~~~~~l~~~-----------------------~~~~i~~s~~t~~~~l~~ 461 (1614)
.+..++..++ ++||+||||||||++++.+++.+... .++.++-+.....+.+..
T Consensus 25 ~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~aa~~~gid~iR~ 104 (472)
T PRK14962 25 LIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELDAASNRGIDEIRK 104 (472)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEEeCcccCCHHHHHH
Confidence 3455565553 37999999999999999988766321 234454444444455543
Q ss_pred HhhcccceeecCCccccccccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeec
Q psy568 462 TFDHYCEYRKTPNGVILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACN 541 (1614)
Q Consensus 462 ~~~~~~~~~~~~~g~~~~p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n 541 (1614)
..+ .. .+.|. .+++-|+||||+|+-. ......|...++.. . ..+.+|++++
T Consensus 105 i~~-~~---------~~~p~-~~~~kVvIIDE~h~Lt------~~a~~~LLk~LE~p-----~-------~~vv~Ilatt 155 (472)
T PRK14962 105 IRD-AV---------GYRPM-EGKYKVYIIDEVHMLT------KEAFNALLKTLEEP-----P-------SHVVFVLATT 155 (472)
T ss_pred HHH-HH---------hhChh-cCCeEEEEEEChHHhH------HHHHHHHHHHHHhC-----C-------CcEEEEEEeC
Confidence 322 11 12232 3566788999999843 33445555666531 1 2356666655
Q ss_pred CCCCCCCCCCcccccccccEEEecCCChhHHHHHHHHHHH
Q psy568 542 PPTDPGRKPLSHRFLRHVPVIYVDYPGETSLKQIYGTFSR 581 (1614)
Q Consensus 542 ~~~~~g~~~l~~r~~r~f~~i~i~~p~~~~l~~I~~~~~~ 581 (1614)
.+. .+++++.+||.++.+..++.+++..++..++.
T Consensus 156 n~~-----kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~ 190 (472)
T PRK14962 156 NLE-----KVPPTIISRCQVIEFRNISDELIIKRLQEVAE 190 (472)
T ss_pred ChH-----hhhHHHhcCcEEEEECCccHHHHHHHHHHHHH
Confidence 432 58999999999999999999999988777654
No 100
>CHL00195 ycf46 Ycf46; Provisional
Probab=98.50 E-value=3.5e-05 Score=95.47 Aligned_cols=70 Identities=21% Similarity=0.414 Sum_probs=53.3
Q ss_pred hccCCccEEEeecCCCChHHHHHHHHHHcCCeEEEEEecCCCC--hhcHHHHHHHHHHHhccCCCcEEEEEcCC
Q psy568 753 FRQPQGHLLLIGVSGAGKTTLSRFVAFMNGLSVFQIRAHNKYT--GADFDEDLRTVLRRSGCKNEKIAFLLDES 824 (1614)
Q Consensus 753 l~~p~gh~LLvG~~GsGKtsl~rlaA~~~~~~~~~i~~~~~~~--~~df~~~lk~~l~~ag~~~~~~v~ll~d~ 824 (1614)
+..|+| +||+||+|||||.+++.+|...|.+++.+..+.-++ ..+-...++.++..+. ...|+++++||-
T Consensus 256 l~~pkG-ILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~vGese~~l~~~f~~A~-~~~P~IL~IDEI 327 (489)
T CHL00195 256 LPTPRG-LLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIVGESESRMRQMIRIAE-ALSPCILWIDEI 327 (489)
T ss_pred CCCCce-EEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccccChHHHHHHHHHHHHH-hcCCcEEEehhh
Confidence 456777 999999999999999999999999999998765433 1222345777777653 346888888874
No 101
>KOG0726|consensus
Probab=98.50 E-value=6e-08 Score=104.88 Aligned_cols=148 Identities=21% Similarity=0.297 Sum_probs=96.6
Q ss_pred HHHHhcCCCEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCCHHHHHhHhhcccceeecCCccccccccCCceEEE
Q psy568 410 YTWLAEHKPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTPELLLKTFDHYCEYRKTPNGVILSPIQLGKWLVL 489 (1614)
Q Consensus 410 ~~~l~~~~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~~~~l~~~~~~~~~~~~~~~g~~~~p~~~gk~~vl 489 (1614)
..-++..+.|+|+|+||||||.+++.+++.. .-.++++ +.++.+|..+..--... ..++.-+......|+
T Consensus 213 emGikpPKGVIlyG~PGTGKTLLAKAVANqT-SATFlRv-----vGseLiQkylGdGpklv----RqlF~vA~e~apSIv 282 (440)
T KOG0726|consen 213 EMGIKPPKGVILYGEPGTGKTLLAKAVANQT-SATFLRV-----VGSELIQKYLGDGPKLV----RELFRVAEEHAPSIV 282 (440)
T ss_pred HcCCCCCCeeEEeCCCCCchhHHHHHHhccc-chhhhhh-----hhHHHHHHHhccchHHH----HHHHHHHHhcCCceE
Confidence 4456778999999999999999998887654 2223322 34444544442100000 011222234456899
Q ss_pred EeccCCCCCccccCcc---------cHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCCCccccccc--
Q psy568 490 FCDEINLPDMDKYATQ---------RVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLRH-- 558 (1614)
Q Consensus 490 fiDdin~p~~d~~g~q---------~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r~-- 558 (1614)
|||||+-...-.|.++ ..+|+|.|+ .||-++ .|+.+|.|+|... .|+|+|.|-
T Consensus 283 FiDEIdAiGtKRyds~SggerEiQrtmLELLNQl---dGFdsr--------gDvKvimATnrie-----~LDPaLiRPGr 346 (440)
T KOG0726|consen 283 FIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQL---DGFDSR--------GDVKVIMATNRIE-----TLDPALIRPGR 346 (440)
T ss_pred EeehhhhhccccccCCCccHHHHHHHHHHHHHhc---cCcccc--------CCeEEEEeccccc-----ccCHhhcCCCc
Confidence 9999998776666542 357777776 233322 3789999999876 689988863
Q ss_pred -ccEEEecCCChhHHHHHHHHHHHhh
Q psy568 559 -VPVIYVDYPGETSLKQIYGTFSRAM 583 (1614)
Q Consensus 559 -f~~i~i~~p~~~~l~~I~~~~~~~~ 583 (1614)
=+-|.++.|+...-++||+.....+
T Consensus 347 IDrKIef~~pDe~TkkkIf~IHTs~M 372 (440)
T KOG0726|consen 347 IDRKIEFPLPDEKTKKKIFQIHTSRM 372 (440)
T ss_pred cccccccCCCchhhhceeEEEeeccc
Confidence 3368899999999999987654443
No 102
>KOG0742|consensus
Probab=98.50 E-value=4.6e-07 Score=102.46 Aligned_cols=168 Identities=20% Similarity=0.270 Sum_probs=107.0
Q ss_pred CCcceeeeCcchhhHHHHHHHHHhc------CCCEEEecCCCCchHHHHHHHHhcCCCCceEEEEccc--CCCHHHHHhH
Q psy568 391 AASDVVVPTLDTVRHESLLYTWLAE------HKPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSS--ATTPELLLKT 462 (1614)
Q Consensus 391 ~~~~~~vpT~~t~r~~~ll~~~l~~------~~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~--~t~~~~l~~~ 462 (1614)
++.+++.++.--.|...+...-.+. -+++|++||||||||+.++.+++.. +..+-.+.... ....+ -...
T Consensus 353 pl~~ViL~psLe~Rie~lA~aTaNTK~h~apfRNilfyGPPGTGKTm~ArelAr~S-GlDYA~mTGGDVAPlG~q-aVTk 430 (630)
T KOG0742|consen 353 PLEGVILHPSLEKRIEDLAIATANTKKHQAPFRNILFYGPPGTGKTMFARELARHS-GLDYAIMTGGDVAPLGAQ-AVTK 430 (630)
T ss_pred CcCCeecCHHHHHHHHHHHHHhcccccccchhhheeeeCCCCCCchHHHHHHHhhc-CCceehhcCCCccccchH-HHHH
Confidence 4555666655545544443222211 2689999999999999999988765 54444333221 11222 2233
Q ss_pred hhcccceeecCCccccccccCCceEEEEeccCCC--CCcc-ccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEe
Q psy568 463 FDHYCEYRKTPNGVILSPIQLGKWLVLFCDEINL--PDMD-KYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGA 539 (1614)
Q Consensus 463 ~~~~~~~~~~~~g~~~~p~~~gk~~vlfiDdin~--p~~d-~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa 539 (1614)
|...++|.++ +.+-+++||||.+- ...+ .|-+...-..|..++-.-|=. -.+|.++.|
T Consensus 431 iH~lFDWakk----------S~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTGdq---------SrdivLvlA 491 (630)
T KOG0742|consen 431 IHKLFDWAKK----------SRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQ---------SRDIVLVLA 491 (630)
T ss_pred HHHHHHHHhh----------cccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhccc---------ccceEEEec
Confidence 4445555432 34559999999883 2222 233444444555555332211 136888999
Q ss_pred ecCCCCCCCCCCccccccccc-EEEecCCChhHHHHHHHHHHHhhh
Q psy568 540 CNPPTDPGRKPLSHRFLRHVP-VIYVDYPGETSLKQIYGTFSRAML 584 (1614)
Q Consensus 540 ~n~~~~~g~~~l~~r~~r~f~-~i~i~~p~~~~l~~I~~~~~~~~~ 584 (1614)
+|.|+ +++.+...|+. ++.+|.|..++..+++..++..+.
T Consensus 492 tNrpg-----dlDsAV~DRide~veFpLPGeEERfkll~lYlnkyi 532 (630)
T KOG0742|consen 492 TNRPG-----DLDSAVNDRIDEVVEFPLPGEEERFKLLNLYLNKYI 532 (630)
T ss_pred cCCcc-----chhHHHHhhhhheeecCCCChHHHHHHHHHHHHHHh
Confidence 99997 68999988888 899999999999999998888765
No 103
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.49 E-value=1.1e-06 Score=109.55 Aligned_cols=221 Identities=13% Similarity=0.193 Sum_probs=126.8
Q ss_pred ceeeeCcchhhHHHHHHHHHhcCCCEEEecCCCCchHHHHHHHHhc----------CCCCceEEEEcccCCCHHHHHhHh
Q psy568 394 DVVVPTLDTVRHESLLYTWLAEHKPLVLCGPPGSGKTMTLLSALRA----------LPDMEVVSLNFSSATTPELLLKTF 463 (1614)
Q Consensus 394 ~~~vpT~~t~r~~~ll~~~l~~~~~vLL~Gp~GtGKT~lv~~~~~~----------l~~~~~~~i~~s~~t~~~~l~~~~ 463 (1614)
+++=.++.+.+....+..+...+.||||.|++||||+.+++.+-.. ..+.+++.+||+.... +.+...+
T Consensus 220 ~iiG~S~~m~~~~~~i~~~A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~e-~lleseL 298 (538)
T PRK15424 220 DLLGQSPQMEQVRQTILLYARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAE-SLLEAEL 298 (538)
T ss_pred heeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccCCh-hhHHHHh
Confidence 3444455666777788888889999999999999999998877654 2456899999987654 2222222
Q ss_pred hcccceeecCCcccccccc--------CCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeE
Q psy568 464 DHYCEYRKTPNGVILSPIQ--------LGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQ 535 (1614)
Q Consensus 464 ~~~~~~~~~~~g~~~~p~~--------~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~ 535 (1614)
-+.- +|.+.++.+ ......+|+|||+. -+.+...-|..+++.+.+....+ ......+++
T Consensus 299 FG~~------~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~------Lp~~~Q~kLl~~L~e~~~~r~G~-~~~~~~dvR 365 (538)
T PRK15424 299 FGYE------EGAFTGSRRGGRAGLFEIAHGGTLFLDEIGE------MPLPLQTRLLRVLEEKEVTRVGG-HQPVPVDVR 365 (538)
T ss_pred cCCc------cccccCccccccCCchhccCCCEEEEcChHh------CCHHHHHHHHhhhhcCeEEecCC-CceeccceE
Confidence 1110 122222110 11235688999997 33345666667777776654322 222335899
Q ss_pred EEEeecCCCC--CCCCCCcccccccccEEEecCCCh----hHHHHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHHH
Q psy568 536 CVGACNPPTD--PGRKPLSHRFLRHVPVIYVDYPGE----TSLKQIYGTFSRAMLRLIPPLRGYADALTNAMVELYLASQ 609 (1614)
Q Consensus 536 ~iaa~n~~~~--~g~~~l~~r~~r~f~~i~i~~p~~----~~l~~I~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 609 (1614)
+|+|++..-. .....+.+.|..|++++.+.-|.- +++..+...++........ ..+.........+....+
T Consensus 366 iIaat~~~L~~~v~~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~--~~~~~~a~~~~~~a~~~L- 442 (538)
T PRK15424 366 VISATHCDLEEDVRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAALS--APFSAALRQGLQQCETLL- 442 (538)
T ss_pred EEEecCCCHHHHHhcccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHHHHHHcC--CCCCHHHHHhhHHHHHHH-
Confidence 9999986520 012234455666777666666654 4455555555544321000 011122211111111111
Q ss_pred hhcCCCCCCccccChhhHHHHhhhhhcc
Q psy568 610 EKFTQDMQPHYVYSPREMTRWVRGICEA 637 (1614)
Q Consensus 610 ~~~~~~~~~hY~F~lRdl~~v~~~i~~~ 637 (1614)
... +|.-|.|+|.+++++++..
T Consensus 443 ~~y------~WPGNvREL~nvier~~i~ 464 (538)
T PRK15424 443 LHY------DWPGNVRELRNLMERLALF 464 (538)
T ss_pred HhC------CCCchHHHHHHHHHHHHHh
Confidence 111 5667999999999987654
No 104
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.49 E-value=1.3e-06 Score=109.14 Aligned_cols=220 Identities=13% Similarity=0.170 Sum_probs=127.8
Q ss_pred eeeeCcchhhHHHHHHHHHhcCCCEEEecCCCCchHHHHHHHHhcC--CCCceEEEEcccCCCHHHHHhHhhcccceeec
Q psy568 395 VVVPTLDTVRHESLLYTWLAEHKPLVLCGPPGSGKTMTLLSALRAL--PDMEVVSLNFSSATTPELLLKTFDHYCEYRKT 472 (1614)
Q Consensus 395 ~~vpT~~t~r~~~ll~~~l~~~~~vLL~Gp~GtGKT~lv~~~~~~l--~~~~~~~i~~s~~t~~~~l~~~~~~~~~~~~~ 472 (1614)
++-.++.+.+....+..+...+.||||.|++||||+.+++.+-... .+.+++.+||..... +.+...+-+.-
T Consensus 214 iiG~S~~m~~~~~~i~~~A~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e-~lleseLFG~~----- 287 (526)
T TIGR02329 214 LLGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAE-SLLEAELFGYE----- 287 (526)
T ss_pred eeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCCh-hHHHHHhcCCc-----
Confidence 3444455667777888888899999999999999999988776543 457899999987654 22222221110
Q ss_pred CCcccccccc--------CCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCC
Q psy568 473 PNGVILSPIQ--------LGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPT 544 (1614)
Q Consensus 473 ~~g~~~~p~~--------~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~ 544 (1614)
+|.+.++.+ ......+|+|||+. -+.+...-|..+++.+.+...++.. ....++++|+|++.+-
T Consensus 288 -~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~------Lp~~~Q~~Ll~~L~~~~~~r~g~~~-~~~~dvRiIaat~~~l 359 (526)
T TIGR02329 288 -EGAFTGARRGGRTGLIEAAHRGTLFLDEIGE------MPLPLQTRLLRVLEEREVVRVGGTE-PVPVDVRVVAATHCAL 359 (526)
T ss_pred -ccccccccccccccchhhcCCceEEecChHh------CCHHHHHHHHHHHhcCcEEecCCCc-eeeecceEEeccCCCH
Confidence 133322211 01235688999997 3344566677777777766533222 2334899999998753
Q ss_pred C--CCCCCCcccccccccEEEecCCCh----hHHHHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHHHhhcCCCCCC
Q psy568 545 D--PGRKPLSHRFLRHVPVIYVDYPGE----TSLKQIYGTFSRAMLRLIPPLRGYADALTNAMVELYLASQEKFTQDMQP 618 (1614)
Q Consensus 545 ~--~g~~~l~~r~~r~f~~i~i~~p~~----~~l~~I~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 618 (1614)
. .....+.+.|..+++++.+.-|.- +++..+...++..+..... ..+.......+-.++..+. . -
T Consensus 360 ~~~v~~g~fr~dL~~rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~--~~~~~~a~~~~~~~~~~L~-~------y 430 (526)
T TIGR02329 360 TTAVQQGRFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQAAAALR--LPDSEAAAQVLAGVADPLQ-R------Y 430 (526)
T ss_pred HHHhhhcchhHHHHHhcCCcEEeCCCchhchhHHHHHHHHHHHHHHHHcC--CCCCHHHHHHhHHHHHHHH-h------C
Confidence 1 112245556666777555555543 4566666665554321110 0111111121111111111 1 1
Q ss_pred ccccChhhHHHHhhhhhcc
Q psy568 619 HYVYSPREMTRWVRGICEA 637 (1614)
Q Consensus 619 hY~F~lRdl~~v~~~i~~~ 637 (1614)
+|.-|.|+|.+++..++..
T Consensus 431 ~WPGNvrEL~nvier~~i~ 449 (526)
T TIGR02329 431 PWPGNVRELRNLVERLALE 449 (526)
T ss_pred CCCchHHHHHHHHHHHHHh
Confidence 5777999999999987653
No 105
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.48 E-value=2.3e-06 Score=109.63 Aligned_cols=215 Identities=12% Similarity=0.077 Sum_probs=126.4
Q ss_pred eeCcchhhHHHHHHHHHhcCCCEEEecCCCCchHHHHHHHHhcC--CCCceEEEEcccCCCHHHHHhHhhccc----c-e
Q psy568 397 VPTLDTVRHESLLYTWLAEHKPLVLCGPPGSGKTMTLLSALRAL--PDMEVVSLNFSSATTPELLLKTFDHYC----E-Y 469 (1614)
Q Consensus 397 vpT~~t~r~~~ll~~~l~~~~~vLL~Gp~GtGKT~lv~~~~~~l--~~~~~~~i~~s~~t~~~~l~~~~~~~~----~-~ 469 (1614)
=..+.+.+....+..+...+.||||.||+||||+++++.+.... .+.+++.+||..... ..+...+-+.- . .
T Consensus 200 G~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~-~~~~~~lfg~~~~~~~~~ 278 (534)
T TIGR01817 200 GKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSE-TLLESELFGHEKGAFTGA 278 (534)
T ss_pred ECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCH-HHHHHHHcCCCCCccCCC
Confidence 33445566777788888899999999999999999998877654 356899999987644 33322221110 0 0
Q ss_pred eecCCccccccccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCC--CC
Q psy568 470 RKTPNGVILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTD--PG 547 (1614)
Q Consensus 470 ~~~~~g~~~~p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~--~g 547 (1614)
.....|.+..+ ...++|||||+.. +......|..+++.+.+....+.. ....++++|+|++.+-. ..
T Consensus 279 ~~~~~g~~~~a----~~GtL~ldei~~L------~~~~Q~~Ll~~l~~~~~~~~~~~~-~~~~~~riI~~s~~~l~~~~~ 347 (534)
T TIGR01817 279 IAQRKGRFELA----DGGTLFLDEIGEI------SPAFQAKLLRVLQEGEFERVGGNR-TLKVDVRLVAATNRDLEEAVA 347 (534)
T ss_pred CcCCCCccccc----CCCeEEEechhhC------CHHHHHHHHHHHhcCcEEECCCCc-eEeecEEEEEeCCCCHHHHHH
Confidence 00011222222 2356888999983 334566677788877665433222 23347999999876420 12
Q ss_pred CCCCcccccccccEEE--ecCCC--hhHHHHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHHHhhcCCCCCCccccC
Q psy568 548 RKPLSHRFLRHVPVIY--VDYPG--ETSLKQIYGTFSRAMLRLIPPLRGYADALTNAMVELYLASQEKFTQDMQPHYVYS 623 (1614)
Q Consensus 548 ~~~l~~r~~r~f~~i~--i~~p~--~~~l~~I~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~hY~F~ 623 (1614)
...+.+.|..+++++. +|+.. .+++..++..++..+......-..+.. ..++... . -+|.-|
T Consensus 348 ~~~f~~~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~----~a~~~L~----~------~~WPGN 413 (534)
T TIGR01817 348 KGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITP----SAIRVLM----S------CKWPGN 413 (534)
T ss_pred cCCCCHHHHHHhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCH----HHHHHHH----h------CCCCCh
Confidence 3346667777877655 44443 366777776666543221100011212 2221111 1 156779
Q ss_pred hhhHHHHhhhhhcc
Q psy568 624 PREMTRWVRGICEA 637 (1614)
Q Consensus 624 lRdl~~v~~~i~~~ 637 (1614)
+|+|.++++.++..
T Consensus 414 vrEL~~v~~~a~~~ 427 (534)
T TIGR01817 414 VRELENCLERTATL 427 (534)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999987653
No 106
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.48 E-value=5.8e-07 Score=113.43 Aligned_cols=150 Identities=18% Similarity=0.153 Sum_probs=92.5
Q ss_pred CCEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccC--CCHHHHHhHhhcccceeecCCccccccccCCceEEEEeccC
Q psy568 417 KPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSA--TTPELLLKTFDHYCEYRKTPNGVILSPIQLGKWLVLFCDEI 494 (1614)
Q Consensus 417 ~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~--t~~~~l~~~~~~~~~~~~~~~g~~~~p~~~gk~~vlfiDdi 494 (1614)
.||||+|+||+|||++++.+.+..+...+.....++. .++..+.....+. .....|.+..+ ...+++|||+
T Consensus 237 ~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~---~~~~~G~l~~A----~~Gil~iDEi 309 (509)
T smart00350 237 INILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTRDPETRE---FTLEGGALVLA----DNGVCCIDEF 309 (509)
T ss_pred ceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceEccCcce---EEecCccEEec----CCCEEEEech
Confidence 4999999999999999988877654332221100000 1111111111111 11123544433 2357788999
Q ss_pred CCCCccccCcccHHHHHHHHHHcCceeeCCCCceEe-ecCeEEEEeecCCCCCCCC----------CCcccccccccE--
Q psy568 495 NLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVS-LERIQCVGACNPPTDPGRK----------PLSHRFLRHVPV-- 561 (1614)
Q Consensus 495 n~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~-~~~~~~iaa~n~~~~~g~~----------~l~~r~~r~f~~-- 561 (1614)
|. .+......|...|+.+.+...+.+.... ..++++|||+||.. |+. .+++.+++||..
T Consensus 310 ~~------l~~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~--g~y~~~~~~~~n~~l~~~lLsRFdLi~ 381 (509)
T smart00350 310 DK------MDDSDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIG--GRYDPKLTPEENIDLPAPILSRFDLLF 381 (509)
T ss_pred hh------CCHHHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCC--cccCCCcChhhccCCChHHhCceeeEE
Confidence 98 4444667788888887764433343333 35899999999975 433 799999999964
Q ss_pred EEecCCChhHHHHHHHHHHH
Q psy568 562 IYVDYPGETSLKQIYGTFSR 581 (1614)
Q Consensus 562 i~i~~p~~~~l~~I~~~~~~ 581 (1614)
+..++|+.+.-..|...++.
T Consensus 382 ~~~d~~~~~~d~~i~~~i~~ 401 (509)
T smart00350 382 VVLDEVDEERDRELAKHVVD 401 (509)
T ss_pred EecCCCChHHHHHHHHHHHH
Confidence 45578888887788665544
No 107
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.47 E-value=7.6e-07 Score=94.70 Aligned_cols=152 Identities=16% Similarity=0.184 Sum_probs=91.8
Q ss_pred cchhhHHHHHHHHHhcCCCEEEecCCCCchHHHHHHHHhcCC--CCceEEEEcccCCCHHHHHhHhhcccc-----eeec
Q psy568 400 LDTVRHESLLYTWLAEHKPLVLCGPPGSGKTMTLLSALRALP--DMEVVSLNFSSATTPELLLKTFDHYCE-----YRKT 472 (1614)
Q Consensus 400 ~~t~r~~~ll~~~l~~~~~vLL~Gp~GtGKT~lv~~~~~~l~--~~~~~~i~~s~~t~~~~l~~~~~~~~~-----~~~~ 472 (1614)
+.+.+....+..+.....||||+|++||||+.+++.+-.... +.+++.+||+.. +.+.+...+-+... ....
T Consensus 6 ~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~-~~~~~e~~LFG~~~~~~~~~~~~ 84 (168)
T PF00158_consen 6 PAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAAL-PEELLESELFGHEKGAFTGARSD 84 (168)
T ss_dssp HHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS--HHHHHHHHHEBCSSSSTTTSSE
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhh-hcchhhhhhhccccccccccccc
Confidence 345667778888889999999999999999999988877543 568999999865 33433333322110 0000
Q ss_pred CCccccccccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCC--CCCCC
Q psy568 473 PNGVILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTD--PGRKP 550 (1614)
Q Consensus 473 ~~g~~~~p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~--~g~~~ 550 (1614)
..|.+-.+ ...++|||||+. -+..+.+.|.++++.+.+....+.. ....++++|+|++.+-. .....
T Consensus 85 ~~G~l~~A----~~GtL~Ld~I~~------L~~~~Q~~Ll~~l~~~~~~~~g~~~-~~~~~~RiI~st~~~l~~~v~~g~ 153 (168)
T PF00158_consen 85 KKGLLEQA----NGGTLFLDEIED------LPPELQAKLLRVLEEGKFTRLGSDK-PVPVDVRIIASTSKDLEELVEQGR 153 (168)
T ss_dssp BEHHHHHT----TTSEEEEETGGG------S-HHHHHHHHHHHHHSEEECCTSSS-EEE--EEEEEEESS-HHHHHHTTS
T ss_pred cCCceeec----cceEEeecchhh------hHHHHHHHHHHHHhhchhccccccc-cccccceEEeecCcCHHHHHHcCC
Confidence 12443333 125677899998 4444778888899988876654433 33358999999986420 00123
Q ss_pred CcccccccccEEE
Q psy568 551 LSHRFLRHVPVIY 563 (1614)
Q Consensus 551 l~~r~~r~f~~i~ 563 (1614)
+.+.|.-|.+++.
T Consensus 154 fr~dLy~rL~~~~ 166 (168)
T PF00158_consen 154 FREDLYYRLNVFT 166 (168)
T ss_dssp S-HHHHHHHTTEE
T ss_pred ChHHHHHHhceEe
Confidence 4555555555444
No 108
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.47 E-value=1.3e-06 Score=98.96 Aligned_cols=150 Identities=12% Similarity=0.087 Sum_probs=90.9
Q ss_pred ceeeeCcchhhHHHHHHHHHh--cCCCEEEecCCCCchHHHHHHHHhcC--CCCceEEEEcccCCCH-HHHHhHhhcccc
Q psy568 394 DVVVPTLDTVRHESLLYTWLA--EHKPLVLCGPPGSGKTMTLLSALRAL--PDMEVVSLNFSSATTP-ELLLKTFDHYCE 468 (1614)
Q Consensus 394 ~~~vpT~~t~r~~~ll~~~l~--~~~~vLL~Gp~GtGKT~lv~~~~~~l--~~~~~~~i~~s~~t~~-~~l~~~~~~~~~ 468 (1614)
+.|++..+. .....+..+.. .+.+++|+||+|||||+++..+.... .+..+..+++....+. ..+.+.+.
T Consensus 22 d~f~~~~n~-~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~~~~~~~~~~~---- 96 (235)
T PRK08084 22 ASFYPGDND-SLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAWFVPEVLEGME---- 96 (235)
T ss_pred cccccCccH-HHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhhhhHHHHHHhh----
Confidence 456666333 34444544443 34689999999999999998777643 2445666666542211 11111110
Q ss_pred eeecCCccccccccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeec-CCCCCC
Q psy568 469 YRKTPNGVILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACN-PPTDPG 547 (1614)
Q Consensus 469 ~~~~~~g~~~~p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n-~~~~~g 547 (1614)
+.-+++|||++....+.-.......++..+.+.|. ..+|.|++ ||. .
T Consensus 97 ----------------~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~--------------~~li~ts~~~p~--~ 144 (235)
T PRK08084 97 ----------------QLSLVCIDNIECIAGDELWEMAIFDLYNRILESGR--------------TRLLITGDRPPR--Q 144 (235)
T ss_pred ----------------hCCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCC--------------CeEEEeCCCChH--H
Confidence 01357789999855443223334566666665432 23444544 443 2
Q ss_pred CCCCcccccccc---cEEEecCCChhHHHHHHHHHH
Q psy568 548 RKPLSHRFLRHV---PVIYVDYPGETSLKQIYGTFS 580 (1614)
Q Consensus 548 ~~~l~~r~~r~f---~~i~i~~p~~~~l~~I~~~~~ 580 (1614)
-..+.+++.+|+ .++.+.+|+.+++..|+....
T Consensus 145 l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a 180 (235)
T PRK08084 145 LNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRA 180 (235)
T ss_pred cCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHHH
Confidence 234679999999 799999999999999976643
No 109
>PRK04195 replication factor C large subunit; Provisional
Probab=98.47 E-value=1.1e-06 Score=110.75 Aligned_cols=135 Identities=20% Similarity=0.269 Sum_probs=91.1
Q ss_pred CCCEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCCHHHHHhHhhcccceeecCCccccccccCCceEEEEeccCC
Q psy568 416 HKPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTPELLLKTFDHYCEYRKTPNGVILSPIQLGKWLVLFCDEIN 495 (1614)
Q Consensus 416 ~~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~~~~l~~~~~~~~~~~~~~~g~~~~p~~~gk~~vlfiDdin 495 (1614)
.+++||+||||||||++++.+++.+ +..++.+|.|...+...+...+...... +.+.+ .++-|++|||++
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el-~~~~ielnasd~r~~~~i~~~i~~~~~~-----~sl~~----~~~kvIiIDEaD 108 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDY-GWEVIELNASDQRTADVIERVAGEAATS-----GSLFG----ARRKLILLDEVD 108 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc-CCCEEEEcccccccHHHHHHHHHHhhcc-----CcccC----CCCeEEEEecCc
Confidence 5789999999999999999998887 7788889988776666665554432211 11111 134677889998
Q ss_pred CCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCCCcc-cccccccEEEecCCChhHHHH
Q psy568 496 LPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSH-RFLRHVPVIYVDYPGETSLKQ 574 (1614)
Q Consensus 496 ~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~-r~~r~f~~i~i~~p~~~~l~~ 574 (1614)
..... +.....+.|+.+++.. +..+|+++|.+. .++. .+.+++..|.++.|+..++..
T Consensus 109 ~L~~~--~d~~~~~aL~~~l~~~--------------~~~iIli~n~~~-----~~~~k~Lrsr~~~I~f~~~~~~~i~~ 167 (482)
T PRK04195 109 GIHGN--EDRGGARAILELIKKA--------------KQPIILTANDPY-----DPSLRELRNACLMIEFKRLSTRSIVP 167 (482)
T ss_pred ccccc--cchhHHHHHHHHHHcC--------------CCCEEEeccCcc-----ccchhhHhccceEEEecCCCHHHHHH
Confidence 74331 1122344455555531 234567777664 3444 567788899999999999998
Q ss_pred HHHHHHH
Q psy568 575 IYGTFSR 581 (1614)
Q Consensus 575 I~~~~~~ 581 (1614)
++..++.
T Consensus 168 ~L~~i~~ 174 (482)
T PRK04195 168 VLKRICR 174 (482)
T ss_pred HHHHHHH
Confidence 8877664
No 110
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=98.46 E-value=1.8e-07 Score=113.29 Aligned_cols=120 Identities=18% Similarity=0.165 Sum_probs=67.7
Q ss_pred cCCCEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCCHH----HHHhHhhcccceeecCCccccccccCCceEEEE
Q psy568 415 EHKPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTPE----LLLKTFDHYCEYRKTPNGVILSPIQLGKWLVLF 490 (1614)
Q Consensus 415 ~~~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~~~----~l~~~~~~~~~~~~~~~g~~~~p~~~gk~~vlf 490 (1614)
...++||+||||||||++++.+++.+ +.+++.++++..+.+. ++...+....... .|.+- .....|+|
T Consensus 107 ~~~~iLl~Gp~GtGKT~lAr~lA~~l-~~pf~~id~~~l~~~gyvG~d~e~~l~~l~~~~---~~~~~----~a~~gIi~ 178 (412)
T PRK05342 107 QKSNILLIGPTGSGKTLLAQTLARIL-DVPFAIADATTLTEAGYVGEDVENILLKLLQAA---DYDVE----KAQRGIVY 178 (412)
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHh-CCCceecchhhcccCCcccchHHHHHHHHHHhc---cccHH----HcCCcEEE
Confidence 35789999999999999999888776 7788888887654321 1211111111100 11111 12457999
Q ss_pred eccCCCCCcccc--------CcccHHHHHHHHHHcCceeeC-CCCceEeecCeEEEEeecC
Q psy568 491 CDEINLPDMDKY--------ATQRVISFLRQLIEQRGFYRP-ADKQWVSLERIQCVGACNP 542 (1614)
Q Consensus 491 iDdin~p~~d~~--------g~q~~lelLrqlld~~~~~~~-~~~~~~~~~~~~~iaa~n~ 542 (1614)
||||+....... +...+...|.+++|......+ .++......++.+|.|+|.
T Consensus 179 iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~~~i~t~ni 239 (412)
T PRK05342 179 IDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQEFIQVDTTNI 239 (412)
T ss_pred EechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcCCCCeEEeccCCc
Confidence 999998654311 112466777788874322222 2222223344445555444
No 111
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=3.2e-07 Score=108.13 Aligned_cols=130 Identities=29% Similarity=0.348 Sum_probs=78.7
Q ss_pred HHHHHHHHhcCCCEEEecCCCCchHHHHHHHHhcCCCCceE-EEEcccCCCHHHHHhHhhccc-ce--eec---------
Q psy568 406 ESLLYTWLAEHKPLVLCGPPGSGKTMTLLSALRALPDMEVV-SLNFSSATTPELLLKTFDHYC-EY--RKT--------- 472 (1614)
Q Consensus 406 ~~ll~~~l~~~~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~-~i~~s~~t~~~~l~~~~~~~~-~~--~~~--------- 472 (1614)
...+..+...|+++|++||||||||++++.+-.-++....- .+.++.- ..+-+.+...+ -+ |.+
T Consensus 188 KrAleiAAAGgHnLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I---~s~~g~~~~~~~~~~~rPFr~PHHsaS~ 264 (490)
T COG0606 188 KRALEIAAAGGHNLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAI---HSLAGDLHEGCPLKIHRPFRAPHHSASL 264 (490)
T ss_pred HHHHHHHHhcCCcEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHH---hhhcccccccCccceeCCccCCCccchH
Confidence 34566788899999999999999999998877666532100 0000000 00000000000 00 000
Q ss_pred ----CCcccccc--ccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceee-CCCCceEeecCeEEEEeecCCC
Q psy568 473 ----PNGVILSP--IQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYR-PADKQWVSLERIQCVGACNPPT 544 (1614)
Q Consensus 473 ----~~g~~~~p--~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~-~~~~~~~~~~~~~~iaa~n~~~ 544 (1614)
..|....| ....+..|+|+||+-- -...+++.||+=+++|.... +.+..+....+|++|+||||..
T Consensus 265 ~aLvGGG~~p~PGeIsLAH~GVLFLDElpe------f~~~iLe~LR~PLE~g~i~IsRa~~~v~ypa~Fqlv~AmNpcp 337 (490)
T COG0606 265 AALVGGGGVPRPGEISLAHNGVLFLDELPE------FKRSILEALREPLENGKIIISRAGSKVTYPARFQLVAAMNPCP 337 (490)
T ss_pred HHHhCCCCCCCCCceeeecCCEEEeeccch------hhHHHHHHHhCccccCcEEEEEcCCeeEEeeeeEEhhhcCCCC
Confidence 01222222 2223568999999866 34479999999999998554 4455566667999999999964
No 112
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.45 E-value=6.6e-07 Score=110.98 Aligned_cols=154 Identities=27% Similarity=0.227 Sum_probs=95.0
Q ss_pred HHHHHHHHhcCCCEEEecCCCCchHHHHHHHHhcCCCCc-eEEEEcccCCCHHHHH---------------------hHh
Q psy568 406 ESLLYTWLAEHKPLVLCGPPGSGKTMTLLSALRALPDME-VVSLNFSSATTPELLL---------------------KTF 463 (1614)
Q Consensus 406 ~~ll~~~l~~~~~vLL~Gp~GtGKT~lv~~~~~~l~~~~-~~~i~~s~~t~~~~l~---------------------~~~ 463 (1614)
...+...+..+++++|.||||||||++++.+...++... -..+..+...+..... ..+
T Consensus 201 ~~al~~aa~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g~~~~~~~~~~~Pf~~p~~s~s~~~~~ 280 (499)
T TIGR00368 201 KRALEIAAAGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVGKLIDRKQIKQRPFRSPHHSASKPALV 280 (499)
T ss_pred HhhhhhhccCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchhhhccccccccCCccccccccchhhhh
Confidence 345666778899999999999999999988876553321 1122222111100000 000
Q ss_pred hcccceeecCCccccccccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceee-CCCCceEeecCeEEEEeecC
Q psy568 464 DHYCEYRKTPNGVILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYR-PADKQWVSLERIQCVGACNP 542 (1614)
Q Consensus 464 ~~~~~~~~~~~g~~~~p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~-~~~~~~~~~~~~~~iaa~n~ 542 (1614)
.+-.. .+.|.+.. ....++||||++. -+..+++.|++.++.+.+.. +.+.......++++|+||||
T Consensus 281 ggg~~---~~pG~i~l----A~~GvLfLDEi~e------~~~~~~~~L~~~LE~~~v~i~r~g~~~~~pa~frlIaa~Np 347 (499)
T TIGR00368 281 GGGPI---PLPGEISL----AHNGVLFLDELPE------FKRSVLDALREPIEDGSISISRASAKIFYPARFQLVAAMNP 347 (499)
T ss_pred CCccc---cchhhhhc----cCCCeEecCChhh------CCHHHHHHHHHHHHcCcEEEEecCcceeccCCeEEEEecCC
Confidence 00000 00122211 2347899999987 45568999999999988653 33444555579999999998
Q ss_pred CC--CCC----------------CCCCccccccccc-EEEecCCChhHH
Q psy568 543 PT--DPG----------------RKPLSHRFLRHVP-VIYVDYPGETSL 572 (1614)
Q Consensus 543 ~~--~~g----------------~~~l~~r~~r~f~-~i~i~~p~~~~l 572 (1614)
.. ..| ...++..|+.||. .+.++.++.+++
T Consensus 348 cpcg~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~~~~~~~~~l 396 (499)
T TIGR00368 348 CPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVPLLPPEKL 396 (499)
T ss_pred cccCcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEEEcCCCHHHH
Confidence 52 111 1258899999999 457777776544
No 113
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.45 E-value=1e-06 Score=92.20 Aligned_cols=138 Identities=25% Similarity=0.294 Sum_probs=79.6
Q ss_pred HHHHHHHhc--CCCEEEecCCCCchHHHHHHHHhcCC--CCceEEEEcccCCCHHHHHhHhhcccceeecCCcccccccc
Q psy568 407 SLLYTWLAE--HKPLVLCGPPGSGKTMTLLSALRALP--DMEVVSLNFSSATTPELLLKTFDHYCEYRKTPNGVILSPIQ 482 (1614)
Q Consensus 407 ~ll~~~l~~--~~~vLL~Gp~GtGKT~lv~~~~~~l~--~~~~~~i~~s~~t~~~~l~~~~~~~~~~~~~~~g~~~~p~~ 482 (1614)
..+...+.. +.+++++||||||||++++.++..+. +..++.++++............... .. ........
T Consensus 8 ~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~---~~---~~~~~~~~ 81 (151)
T cd00009 8 EALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHF---LV---RLLFELAE 81 (151)
T ss_pred HHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhh---hH---hHHHHhhc
Confidence 334444444 78999999999999999999998762 4567777777655544333222210 00 00001111
Q ss_pred CCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCCCcccccccc-cE
Q psy568 483 LGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLRHV-PV 561 (1614)
Q Consensus 483 ~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r~f-~~ 561 (1614)
..+..++++||++.... ...+.+.+++.....+. ....++.+|+++++... ..+.+.+.+|| ..
T Consensus 82 ~~~~~~lilDe~~~~~~------~~~~~~~~~i~~~~~~~------~~~~~~~ii~~~~~~~~---~~~~~~~~~r~~~~ 146 (151)
T cd00009 82 KAKPGVLFIDEIDSLSR------GAQNALLRVLETLNDLR------IDRENVRVIGATNRPLL---GDLDRALYDRLDIR 146 (151)
T ss_pred cCCCeEEEEeChhhhhH------HHHHHHHHHHHhcCcee------ccCCCeEEEEecCcccc---CCcChhHHhhhccE
Confidence 23457888999998422 23334444444322211 12246888999988752 45667777777 45
Q ss_pred EEec
Q psy568 562 IYVD 565 (1614)
Q Consensus 562 i~i~ 565 (1614)
+.++
T Consensus 147 i~~~ 150 (151)
T cd00009 147 IVIP 150 (151)
T ss_pred eecC
Confidence 5443
No 114
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.45 E-value=8e-07 Score=106.37 Aligned_cols=142 Identities=15% Similarity=0.177 Sum_probs=93.6
Q ss_pred HHHHHHhcCC---CEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCCHHHHHhHhhcccceeecCCccccccccCC
Q psy568 408 LLYTWLAEHK---PLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTPELLLKTFDHYCEYRKTPNGVILSPIQLG 484 (1614)
Q Consensus 408 ll~~~l~~~~---~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~~~~l~~~~~~~~~~~~~~~g~~~~p~~~g 484 (1614)
.+..++..|+ .+|++||+|+|||++++.+++.+ +..+..++++. .....+...+...... . |. .+
T Consensus 32 ~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~-~~~~~~i~~~~-~~~~~i~~~l~~~~~~-----~----~~-~~ 99 (316)
T PHA02544 32 TFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV-GAEVLFVNGSD-CRIDFVRNRLTRFAST-----V----SL-TG 99 (316)
T ss_pred HHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh-CccceEeccCc-ccHHHHHHHHHHHHHh-----h----cc-cC
Confidence 3444555553 44558999999999999988876 55677888876 3333333333221110 0 11 12
Q ss_pred ceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCCCcccccccccEEEe
Q psy568 485 KWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLRHVPVIYV 564 (1614)
Q Consensus 485 k~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r~f~~i~i 564 (1614)
..-+++|||++.. +.....+.|+.+++... .++.||.++|.+. .+.+++.+||.++.+
T Consensus 100 ~~~vliiDe~d~l-----~~~~~~~~L~~~le~~~------------~~~~~Ilt~n~~~-----~l~~~l~sR~~~i~~ 157 (316)
T PHA02544 100 GGKVIIIDEFDRL-----GLADAQRHLRSFMEAYS------------KNCSFIITANNKN-----GIIEPLRSRCRVIDF 157 (316)
T ss_pred CCeEEEEECcccc-----cCHHHHHHHHHHHHhcC------------CCceEEEEcCChh-----hchHHHHhhceEEEe
Confidence 2356778999863 13335677888777421 2467888888653 688999999999999
Q ss_pred cCCChhHHHHHHHHHHHhh
Q psy568 565 DYPGETSLKQIYGTFSRAM 583 (1614)
Q Consensus 565 ~~p~~~~l~~I~~~~~~~~ 583 (1614)
+.|+.++...++..+....
T Consensus 158 ~~p~~~~~~~il~~~~~~~ 176 (316)
T PHA02544 158 GVPTKEEQIEMMKQMIVRC 176 (316)
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 9999999888877655443
No 115
>KOG0744|consensus
Probab=98.45 E-value=1.7e-06 Score=95.70 Aligned_cols=150 Identities=19% Similarity=0.324 Sum_probs=93.8
Q ss_pred HhcCCCEEEecCCCCchHHHHHHHHhcCC----C----CceEEEEcccCCC------HHHHHhHhhcccceeecCCcccc
Q psy568 413 LAEHKPLVLCGPPGSGKTMTLLSALRALP----D----MEVVSLNFSSATT------PELLLKTFDHYCEYRKTPNGVIL 478 (1614)
Q Consensus 413 l~~~~~vLL~Gp~GtGKT~lv~~~~~~l~----~----~~~~~i~~s~~t~------~~~l~~~~~~~~~~~~~~~g~~~ 478 (1614)
+..++=+||+||||||||++.+.+++++. + ..++.+|+++-.+ ...+...|...-+..
T Consensus 174 It~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv-------- 245 (423)
T KOG0744|consen 174 ITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELV-------- 245 (423)
T ss_pred eeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHH--------
Confidence 34567799999999999999999998773 1 1245666554322 222333332211111
Q ss_pred ccccCCceEEEEeccCCCCCccc----cCc--ccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCCCc
Q psy568 479 SPIQLGKWLVLFCDEINLPDMDK----YAT--QRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLS 552 (1614)
Q Consensus 479 ~p~~~gk~~vlfiDdin~p~~d~----~g~--q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~ 552 (1614)
.- .|.-+.+.|||+...+.-+ .++ ...+-.+..++.. -...+..+|+.+.+|+|... .++
T Consensus 246 ~d--~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQ-------lDrlK~~~NvliL~TSNl~~-----siD 311 (423)
T KOG0744|consen 246 ED--RGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQ-------LDRLKRYPNVLILATSNLTD-----SID 311 (423)
T ss_pred hC--CCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHH-------HHHhccCCCEEEEeccchHH-----HHH
Confidence 11 2555777889987422111 011 1223333333322 01234557899999999875 699
Q ss_pred cccccccc-EEEecCCChhHHHHHHHHHHHhhh
Q psy568 553 HRFLRHVP-VIYVDYPGETSLKQIYGTFSRAML 584 (1614)
Q Consensus 553 ~r~~r~f~-~i~i~~p~~~~l~~I~~~~~~~~~ 584 (1614)
.+|..|-. +.++.+|+...+.+||...+..+.
T Consensus 312 ~AfVDRADi~~yVG~Pt~~ai~~IlkscieEL~ 344 (423)
T KOG0744|consen 312 VAFVDRADIVFYVGPPTAEAIYEILKSCIEELI 344 (423)
T ss_pred HHhhhHhhheeecCCccHHHHHHHHHHHHHHHH
Confidence 99998766 789999999999999988776654
No 116
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.44 E-value=1.7e-06 Score=108.31 Aligned_cols=141 Identities=14% Similarity=0.180 Sum_probs=93.8
Q ss_pred HHHHHHhcC---CCEEEecCCCCchHHHHHHHHhcCCCC-----------------------ceEEEEcccCCCHHHHHh
Q psy568 408 LLYTWLAEH---KPLVLCGPPGSGKTMTLLSALRALPDM-----------------------EVVSLNFSSATTPELLLK 461 (1614)
Q Consensus 408 ll~~~l~~~---~~vLL~Gp~GtGKT~lv~~~~~~l~~~-----------------------~~~~i~~s~~t~~~~l~~ 461 (1614)
.|..++..| +.+||+||+|||||++++.+++.+... .++.++-++....+++..
T Consensus 27 ~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviEIDAas~rgVDdIRe 106 (830)
T PRK07003 27 ALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVEMDAASNRGVDEMAA 106 (830)
T ss_pred HHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEEecccccccHHHHHH
Confidence 445556654 346999999999999999888866311 234444444455555555
Q ss_pred HhhcccceeecCCccccccccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeec
Q psy568 462 TFDHYCEYRKTPNGVILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACN 541 (1614)
Q Consensus 462 ~~~~~~~~~~~~~g~~~~p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n 541 (1614)
.++. ..+.|. .+++-|++|||+|+-..+ ....+|+ .++.- ..++.||.++|
T Consensus 107 LIe~----------a~~~P~-~gr~KVIIIDEah~LT~~-----A~NALLK-tLEEP------------P~~v~FILaTt 157 (830)
T PRK07003 107 LLER----------AVYAPV-DARFKVYMIDEVHMLTNH-----AFNAMLK-TLEEP------------PPHVKFILATT 157 (830)
T ss_pred HHHH----------HHhccc-cCCceEEEEeChhhCCHH-----HHHHHHH-HHHhc------------CCCeEEEEEEC
Confidence 5432 123343 355678889999995433 1233444 45531 12577888887
Q ss_pred CCCCCCCCCCcccccccccEEEecCCChhHHHHHHHHHHHh
Q psy568 542 PPTDPGRKPLSHRFLRHVPVIYVDYPGETSLKQIYGTFSRA 582 (1614)
Q Consensus 542 ~~~~~g~~~l~~r~~r~f~~i~i~~p~~~~l~~I~~~~~~~ 582 (1614)
.+. .|++.+++||..|.+..++.+++...+..++..
T Consensus 158 d~~-----KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~ 193 (830)
T PRK07003 158 DPQ-----KIPVTVLSRCLQFNLKQMPAGHIVSHLERILGE 193 (830)
T ss_pred Chh-----hccchhhhheEEEecCCcCHHHHHHHHHHHHHH
Confidence 654 688899999999999999999999888777653
No 117
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=5.5e-07 Score=111.01 Aligned_cols=146 Identities=23% Similarity=0.319 Sum_probs=92.5
Q ss_pred hcCCCEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCCHHHHHhHhhcccceeecCCccccccccCCceEEEEecc
Q psy568 414 AEHKPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTPELLLKTFDHYCEYRKTPNGVILSPIQLGKWLVLFCDE 493 (1614)
Q Consensus 414 ~~~~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~~~~l~~~~~~~~~~~~~~~g~~~~p~~~gk~~vlfiDd 493 (1614)
.-.+.|||+||||||||.+++..+..- +.++..++.|+ +...+-+.-..|. .-.+..+ +...+||+||||
T Consensus 181 kiPkGvlLvGpPGTGKTLLAkAvAgEA-~VPFf~iSGS~------FVemfVGvGAsRV--RdLF~qA-kk~aP~IIFIDE 250 (596)
T COG0465 181 KIPKGVLLVGPPGTGKTLLAKAVAGEA-GVPFFSISGSD------FVEMFVGVGASRV--RDLFEQA-KKNAPCIIFIDE 250 (596)
T ss_pred ccccceeEecCCCCCcHHHHHHHhccc-CCCceeccchh------hhhhhcCCCcHHH--HHHHHHh-hccCCCeEEEeh
Confidence 346889999999999999998888765 66766665443 2223222111111 0111122 234469999999
Q ss_pred CCCCCccc---c--CcccHHHHHHHHHHc-CceeeCCCCceEeecCeEEEEeecCCCCCCCCCCcccccc---cccEEEe
Q psy568 494 INLPDMDK---Y--ATQRVISFLRQLIEQ-RGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLR---HVPVIYV 564 (1614)
Q Consensus 494 in~p~~d~---~--g~q~~lelLrqlld~-~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r---~f~~i~i 564 (1614)
|+-..... . |...--..|.|++-. -||.. + ..+.++|++|.|+ -++++++| +++.|.+
T Consensus 251 iDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~-~-------~gviviaaTNRpd-----VlD~ALlRpgRFDRqI~V 317 (596)
T COG0465 251 IDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGG-N-------EGVIVIAATNRPD-----VLDPALLRPGRFDRQILV 317 (596)
T ss_pred hhhcccccCCCCCCCchHHHHHHHHHHhhhccCCC-C-------CceEEEecCCCcc-----cchHhhcCCCCcceeeec
Confidence 99654433 1 122222356666543 34442 1 3588899999987 57887775 5568999
Q ss_pred cCCChhHHHHHHHHHHHh
Q psy568 565 DYPGETSLKQIYGTFSRA 582 (1614)
Q Consensus 565 ~~p~~~~l~~I~~~~~~~ 582 (1614)
+.|+-.....|.+...+.
T Consensus 318 ~~PDi~gRe~IlkvH~~~ 335 (596)
T COG0465 318 ELPDIKGREQILKVHAKN 335 (596)
T ss_pred CCcchhhHHHHHHHHhhc
Confidence 999999999998865554
No 118
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=98.42 E-value=2.5e-06 Score=102.61 Aligned_cols=218 Identities=15% Similarity=0.185 Sum_probs=127.1
Q ss_pred cceeeeCcchhhHHHHHHHHHhcCCCEEEecCCCCchHHHHHHHHhcC--CCCceEEEEcccCCCHHHHHhHhhc----c
Q psy568 393 SDVVVPTLDTVRHESLLYTWLAEHKPLVLCGPPGSGKTMTLLSALRAL--PDMEVVSLNFSSATTPELLLKTFDH----Y 466 (1614)
Q Consensus 393 ~~~~vpT~~t~r~~~ll~~~l~~~~~vLL~Gp~GtGKT~lv~~~~~~l--~~~~~~~i~~s~~t~~~~l~~~~~~----~ 466 (1614)
.+++-.++.+.+....+..+..+..|||+.|++||||-.+++.+-... .+.+++.+||.+... +.+...+-+ .
T Consensus 141 ~~liG~S~am~~l~~~i~kvA~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~-~l~ESELFGhekGA 219 (464)
T COG2204 141 GELVGESPAMQQLRRLIAKVAPSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPE-NLLESELFGHEKGA 219 (464)
T ss_pred CCceecCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCH-HHHHHHhhcccccC
Confidence 345556677888888999999999999999999999998776555433 256899999976554 222221211 1
Q ss_pred cc-eeecCCccccccccCCceEEEEeccCCCCCccccCcccH-HHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCC
Q psy568 467 CE-YRKTPNGVILSPIQLGKWLVLFCDEINLPDMDKYATQRV-ISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPT 544 (1614)
Q Consensus 467 ~~-~~~~~~g~~~~p~~~gk~~vlfiDdin~p~~d~~g~q~~-lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~ 544 (1614)
+. -...+.|.+-.+ ....+|+|||--- +..+ ..+||- +..+.+..-.+... .-.|+++|+|+|..-
T Consensus 220 FTGA~~~r~G~fE~A----~GGTLfLDEI~~m------pl~~Q~kLLRv-Lqe~~~~rvG~~~~-i~vdvRiIaaT~~dL 287 (464)
T COG2204 220 FTGAITRRIGRFEQA----NGGTLFLDEIGEM------PLELQVKLLRV-LQEREFERVGGNKP-IKVDVRIIAATNRDL 287 (464)
T ss_pred cCCcccccCcceeEc----CCceEEeeccccC------CHHHHHHHHHH-HHcCeeEecCCCcc-cceeeEEEeecCcCH
Confidence 10 001112333332 2267899999742 2223 345554 45566655333222 224899999999753
Q ss_pred C--CCCCCCcccccccccEEEecCCCh----hHHHHHHHHHHHhhhhcc-hhhhhhHHHHHHHHHHHHHHHHhhcCCCCC
Q psy568 545 D--PGRKPLSHRFLRHVPVIYVDYPGE----TSLKQIYGTFSRAMLRLI-PPLRGYADALTNAMVELYLASQEKFTQDMQ 617 (1614)
Q Consensus 545 ~--~g~~~l~~r~~r~f~~i~i~~p~~----~~l~~I~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 617 (1614)
. .....+-+.|.-|.+++.+.-|.- +++--++..++..+.... .....+.....+.+.. +
T Consensus 288 ~~~v~~G~FReDLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~~L~~-------------y 354 (464)
T COG2204 288 EEEVAAGRFREDLYYRLNVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALAALLA-------------Y 354 (464)
T ss_pred HHHHHcCCcHHHHHhhhccceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHh-------------C
Confidence 0 011234556777888888887764 556666666655443211 1112222222221110 0
Q ss_pred CccccChhhHHHHhhhhhcc
Q psy568 618 PHYVYSPREMTRWVRGICEA 637 (1614)
Q Consensus 618 ~hY~F~lRdl~~v~~~i~~~ 637 (1614)
-|.-|.|+|.+++.+++-.
T Consensus 355 -~WPGNVREL~N~ver~~il 373 (464)
T COG2204 355 -DWPGNVRELENVVERAVIL 373 (464)
T ss_pred -CCChHHHHHHHHHHHHHhc
Confidence 1344999999999987754
No 119
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.41 E-value=4.3e-06 Score=105.96 Aligned_cols=211 Identities=14% Similarity=0.071 Sum_probs=123.5
Q ss_pred cchhhHHHHHHHHHhcCCCEEEecCCCCchHHHHHHHHhcC--CCCceEEEEcccCCCHHHHHhHhhc----ccc-eeec
Q psy568 400 LDTVRHESLLYTWLAEHKPLVLCGPPGSGKTMTLLSALRAL--PDMEVVSLNFSSATTPELLLKTFDH----YCE-YRKT 472 (1614)
Q Consensus 400 ~~t~r~~~ll~~~l~~~~~vLL~Gp~GtGKT~lv~~~~~~l--~~~~~~~i~~s~~t~~~~l~~~~~~----~~~-~~~~ 472 (1614)
+.+.+....+..+...+.||||+|++||||+.+++.+.... .+.+++.+||+.... +.+...+-+ .+. ....
T Consensus 194 ~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~-~~~e~~lfG~~~g~~~ga~~~ 272 (509)
T PRK05022 194 PAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPE-SLAESELFGHVKGAFTGAISN 272 (509)
T ss_pred HHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCCh-HHHHHHhcCccccccCCCccc
Confidence 34556777788888899999999999999999988777654 356899999987654 222222111 000 0000
Q ss_pred CCccccccccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCC--CCCCC
Q psy568 473 PNGVILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTD--PGRKP 550 (1614)
Q Consensus 473 ~~g~~~~p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~--~g~~~ 550 (1614)
..|.+-.+ ....+|||||+.. +.....-|..+++.+.+....+. .....++++|+|++..-. .....
T Consensus 273 ~~g~~~~a----~gGtL~ldeI~~L------~~~~Q~~Ll~~l~~~~~~~~g~~-~~~~~~~RiI~~t~~~l~~~~~~~~ 341 (509)
T PRK05022 273 RSGKFELA----DGGTLFLDEIGEL------PLALQAKLLRVLQYGEIQRVGSD-RSLRVDVRVIAATNRDLREEVRAGR 341 (509)
T ss_pred CCcchhhc----CCCEEEecChhhC------CHHHHHHHHHHHhcCCEeeCCCC-cceecceEEEEecCCCHHHHHHcCC
Confidence 12333222 2245788999983 33456667777887776543222 222358999999987520 12335
Q ss_pred CcccccccccEEEecCCCh----hHHHHHHHHHHHhhhhcch-hhhhhHHHHHHHHHHHHHHHHhhcCCCCCCccccChh
Q psy568 551 LSHRFLRHVPVIYVDYPGE----TSLKQIYGTFSRAMLRLIP-PLRGYADALTNAMVELYLASQEKFTQDMQPHYVYSPR 625 (1614)
Q Consensus 551 l~~r~~r~f~~i~i~~p~~----~~l~~I~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~hY~F~lR 625 (1614)
+.+.|..+++++.+.-|.- +++..+...++..+..... ....+ ....++... . -||.-|+|
T Consensus 342 f~~dL~~rl~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~----s~~a~~~L~----~------y~WPGNvr 407 (509)
T PRK05022 342 FRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRL----SPAAQAALL----A------YDWPGNVR 407 (509)
T ss_pred ccHHHHhcccccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCC----CHHHHHHHH----h------CCCCCcHH
Confidence 6777777887766666653 3455554444443221100 00111 111111111 1 16777999
Q ss_pred hHHHHhhhhhc
Q psy568 626 EMTRWVRGICE 636 (1614)
Q Consensus 626 dl~~v~~~i~~ 636 (1614)
+|.+++...+.
T Consensus 408 EL~~~i~ra~~ 418 (509)
T PRK05022 408 ELEHVISRAAL 418 (509)
T ss_pred HHHHHHHHHHH
Confidence 99999998764
No 120
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.41 E-value=1.4e-06 Score=102.94 Aligned_cols=162 Identities=12% Similarity=0.133 Sum_probs=100.0
Q ss_pred eeeeCcchhhHHHHHHHHHhcCCCEEEecCCCCchHHHHHHHHhcC---CCCceEEEEcccCCCHHHH---HhHhhcccc
Q psy568 395 VVVPTLDTVRHESLLYTWLAEHKPLVLCGPPGSGKTMTLLSALRAL---PDMEVVSLNFSSATTPELL---LKTFDHYCE 468 (1614)
Q Consensus 395 ~~vpT~~t~r~~~ll~~~l~~~~~vLL~Gp~GtGKT~lv~~~~~~l---~~~~~~~i~~s~~t~~~~l---~~~~~~~~~ 468 (1614)
++=..+...+...-+..+..++.|||+.|+||+||+.+++.+-... .+.+++.+||...+..-.. .|.-.+.+.
T Consensus 80 LIG~~~~~~~~~eqik~~ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en~~~~eLFG~~kGaft 159 (403)
T COG1221 80 LIGESPSLQELREQIKAYAPSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSENLQEAELFGHEKGAFT 159 (403)
T ss_pred hhccCHHHHHHHHHHHhhCCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCcCHHHHHHhccccceee
Confidence 3334455667777777788899999999999999998876655322 3568999999877654222 222111111
Q ss_pred e-eecCCccccccccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCC
Q psy568 469 Y-RKTPNGVILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPG 547 (1614)
Q Consensus 469 ~-~~~~~g~~~~p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g 547 (1614)
- ...+.|.+-.+ .| ..+|+|||+. -..+..+.|-.++|.|.+..-++ .-....++++|+|++-.. +
T Consensus 160 Ga~~~k~Glfe~A--~G--GtLfLDEI~~------LP~~~Q~kLl~~le~g~~~rvG~-~~~~~~dVRli~AT~~~l--~ 226 (403)
T COG1221 160 GAQGGKAGLFEQA--NG--GTLFLDEIHR------LPPEGQEKLLRVLEEGEYRRVGG-SQPRPVDVRLICATTEDL--E 226 (403)
T ss_pred cccCCcCchheec--CC--CEEehhhhhh------CCHhHHHHHHHHHHcCceEecCC-CCCcCCCceeeeccccCH--H
Confidence 0 01111322222 12 5688999998 44447788889999987765433 444556899999988643 2
Q ss_pred CCCCc-ccccccccEEEecCCCh
Q psy568 548 RKPLS-HRFLRHVPVIYVDYPGE 569 (1614)
Q Consensus 548 ~~~l~-~r~~r~f~~i~i~~p~~ 569 (1614)
+.-+. .-|.+|-.++.+.-|+-
T Consensus 227 ~~~~~g~dl~~rl~~~~I~LPpL 249 (403)
T COG1221 227 EAVLAGADLTRRLNILTITLPPL 249 (403)
T ss_pred HHHHhhcchhhhhcCceecCCCh
Confidence 22222 35666555555555544
No 121
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.41 E-value=1.5e-06 Score=107.95 Aligned_cols=142 Identities=18% Similarity=0.244 Sum_probs=95.5
Q ss_pred HHHHHHHhcC---CCEEEecCCCCchHHHHHHHHhcCCC-----------------------CceEEEEcccCCCHHHHH
Q psy568 407 SLLYTWLAEH---KPLVLCGPPGSGKTMTLLSALRALPD-----------------------MEVVSLNFSSATTPELLL 460 (1614)
Q Consensus 407 ~ll~~~l~~~---~~vLL~Gp~GtGKT~lv~~~~~~l~~-----------------------~~~~~i~~s~~t~~~~l~ 460 (1614)
..+..++..| +.+||+||+|+|||++++.+++.+.. ..++.++.++.+..+++.
T Consensus 25 ~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviEIDAAs~~~VddIR 104 (702)
T PRK14960 25 RALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIEIDAASRTKVEDTR 104 (702)
T ss_pred HHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEEecccccCCHHHHH
Confidence 3455566665 45699999999999999988876631 023445555555666665
Q ss_pred hHhhcccceeecCCccccccccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEee
Q psy568 461 KTFDHYCEYRKTPNGVILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGAC 540 (1614)
Q Consensus 461 ~~~~~~~~~~~~~~g~~~~p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~ 540 (1614)
..++. ..+.|. .|++-|++|||+|+-..+ ....|+..++... ..+.||.++
T Consensus 105 eli~~----------~~y~P~-~gk~KV~IIDEVh~LS~~------A~NALLKtLEEPP------------~~v~FILaT 155 (702)
T PRK14960 105 ELLDN----------VPYAPT-QGRFKVYLIDEVHMLSTH------SFNALLKTLEEPP------------EHVKFLFAT 155 (702)
T ss_pred HHHHH----------Hhhhhh-cCCcEEEEEechHhcCHH------HHHHHHHHHhcCC------------CCcEEEEEE
Confidence 55432 123343 366678889999994433 4555666666411 245677777
Q ss_pred cCCCCCCCCCCcccccccccEEEecCCChhHHHHHHHHHHHh
Q psy568 541 NPPTDPGRKPLSHRFLRHVPVIYVDYPGETSLKQIYGTFSRA 582 (1614)
Q Consensus 541 n~~~~~g~~~l~~r~~r~f~~i~i~~p~~~~l~~I~~~~~~~ 582 (1614)
+.+. .+++.+++|+..+.+..++.+++...+..++..
T Consensus 156 td~~-----kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~k 192 (702)
T PRK14960 156 TDPQ-----KLPITVISRCLQFTLRPLAVDEITKHLGAILEK 192 (702)
T ss_pred CChH-----hhhHHHHHhhheeeccCCCHHHHHHHHHHHHHH
Confidence 6543 467788899999999999999998887776653
No 122
>KOG0743|consensus
Probab=98.38 E-value=1.7e-06 Score=101.31 Aligned_cols=136 Identities=20% Similarity=0.324 Sum_probs=94.4
Q ss_pred CCCEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCCHHHHHhHhhcccceeecCCccccccccCCceEEEEeccCC
Q psy568 416 HKPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTPELLLKTFDHYCEYRKTPNGVILSPIQLGKWLVLFCDEIN 495 (1614)
Q Consensus 416 ~~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~~~~l~~~~~~~~~~~~~~~g~~~~p~~~gk~~vlfiDdin 495 (1614)
++.-||+||||||||++|.+++..+ ++.+.-++.++..+-+++...+.. . .+ +.||.|.||+
T Consensus 235 KRGYLLYGPPGTGKSS~IaAmAn~L-~ydIydLeLt~v~~n~dLr~LL~~--------------t--~~-kSIivIEDID 296 (457)
T KOG0743|consen 235 KRGYLLYGPPGTGKSSFIAAMANYL-NYDIYDLELTEVKLDSDLRHLLLA--------------T--PN-KSILLIEDID 296 (457)
T ss_pred hccceeeCCCCCCHHHHHHHHHhhc-CCceEEeeeccccCcHHHHHHHHh--------------C--CC-CcEEEEeecc
Confidence 3678999999999999998888777 899999999888777777665532 0 12 3667789999
Q ss_pred CCCc--c-------c-cC--cccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCCCcccccc--ccc-
Q psy568 496 LPDM--D-------K-YA--TQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLR--HVP- 560 (1614)
Q Consensus 496 ~p~~--d-------~-~g--~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r--~f~- 560 (1614)
..-. + . .| +.-++.-|.-++| |++..-+. +.+ +|.|+|... .|+|+|+| |.-
T Consensus 297 cs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiD--GlwSscg~-----ERI-ivFTTNh~E-----kLDPALlRpGRmDm 363 (457)
T KOG0743|consen 297 CSFDLRERRKKKKENFEGDLSRVTLSGLLNFLD--GLWSSCGD-----ERI-IVFTTNHKE-----KLDPALLRPGRMDM 363 (457)
T ss_pred cccccccccccccccccCCcceeehHHhhhhhc--cccccCCC-----ceE-EEEecCChh-----hcCHhhcCCCccee
Confidence 6411 1 0 11 2234555555555 34432211 233 456888765 79999999 666
Q ss_pred EEEecCCChhHHHHHHHHHHHh
Q psy568 561 VIYVDYPGETSLKQIYGTFSRA 582 (1614)
Q Consensus 561 ~i~i~~p~~~~l~~I~~~~~~~ 582 (1614)
-|++.+.+.+.+...++.++..
T Consensus 364 hI~mgyCtf~~fK~La~nYL~~ 385 (457)
T KOG0743|consen 364 HIYMGYCTFEAFKTLASNYLGI 385 (457)
T ss_pred EEEcCCCCHHHHHHHHHHhcCC
Confidence 4799999999999888887653
No 123
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.38 E-value=7.1e-05 Score=99.95 Aligned_cols=155 Identities=19% Similarity=0.282 Sum_probs=97.0
Q ss_pred HHHHHHHhcc-CCccEEEeecCCCChHHHHHHHHHHc----------CCeEEEEEecCCCC----hhcHHHHHHHHHHHh
Q psy568 746 VLRIDRIFRQ-PQGHLLLIGVSGAGKTTLSRFVAFMN----------GLSVFQIRAHNKYT----GADFDEDLRTVLRRS 810 (1614)
Q Consensus 746 i~ri~Ril~~-p~gh~LLvG~~GsGKtsl~rlaA~~~----------~~~~~~i~~~~~~~----~~df~~~lk~~l~~a 810 (1614)
+.|+.++|.. ..++++|+|++|+|||++++.+|... ++.++.+.+..... ..+|.+-++.++...
T Consensus 187 i~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ag~~~~g~~e~~lk~~~~~~ 266 (857)
T PRK10865 187 IRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDL 266 (857)
T ss_pred HHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhhccchhhhhHHHHHHHHHHH
Confidence 6677777654 45689999999999999999888765 78888887765432 346777788888775
Q ss_pred ccCCCcEEEEEcCCcccccchHHHHHHhhccCCCCCCCChhhHHHHHHHhHHHHHHcCCCCCCHHHHHHHHHHHHhhcce
Q psy568 811 GCKNEKIAFLLDESNVLESGFLERMNTLLANGEIPGLFEGDEYTTLMTQCKEGAQREGLMLDSNEELYKWFTQQVMKNLH 890 (1614)
Q Consensus 811 g~~~~~~v~ll~d~~i~~~~~le~in~lL~~G~v~~Lf~~eE~~~i~~~~~~~~~~~~~~~~s~~~l~~~f~~rv~~nlh 890 (1614)
...+.++++++|+- ..+...|.-.+-. +...+ +++. . -+-.++
T Consensus 267 ~~~~~~~ILfIDEi-----------h~l~~~~~~~~~~---d~~~~---lkp~------------------l--~~g~l~ 309 (857)
T PRK10865 267 AKQEGNVILFIDEL-----------HTMVGAGKADGAM---DAGNM---LKPA------------------L--ARGELH 309 (857)
T ss_pred HHcCCCeEEEEecH-----------HHhccCCCCccch---hHHHH---hcch------------------h--hcCCCe
Confidence 44567788888774 3444444221111 11111 1111 1 123566
Q ss_pred EEEEECCCChhhHHHhhhCccccccceecccCCCcHHHHHHHHHHhhcc
Q psy568 891 VVFTMNPSSEGLKDRAATSPALFNRCVLNWFGDWSDTALYQVAKEFTSK 939 (1614)
Q Consensus 891 ivl~~sp~~~~~r~~~~~~PaL~~~~~i~wf~~W~~eaL~~va~~~l~~ 939 (1614)
++-...+ +.+|..+..-|+|.+++....+.+-+.+....+-+...+.
T Consensus 310 ~IgaTt~--~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~~~ 356 (857)
T PRK10865 310 CVGATTL--DEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLKER 356 (857)
T ss_pred EEEcCCC--HHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHhhh
Confidence 6665554 4577777778888888854444444666666565554443
No 124
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.37 E-value=4.1e-06 Score=103.66 Aligned_cols=162 Identities=21% Similarity=0.189 Sum_probs=98.7
Q ss_pred HHHHHHHHHhcC--CCEEEecCCCCchHHHHHHHHhcCC----CCceEEEEcccCCCHHHHHhHhhcccce-eecCCccc
Q psy568 405 HESLLYTWLAEH--KPLVLCGPPGSGKTMTLLSALRALP----DMEVVSLNFSSATTPELLLKTFDHYCEY-RKTPNGVI 477 (1614)
Q Consensus 405 ~~~ll~~~l~~~--~~vLL~Gp~GtGKT~lv~~~~~~l~----~~~~~~i~~s~~t~~~~l~~~~~~~~~~-~~~~~g~~ 477 (1614)
....+...+..+ .+++++||||+|||++++.+++.+. +..++.++|....++..+...+-..+.. .....|.-
T Consensus 42 l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~ 121 (394)
T PRK00411 42 LAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQLFGHPPPSSGLS 121 (394)
T ss_pred HHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHHhcCCCCCCCCCC
Confidence 334444445433 5699999999999999999997652 3557889998777766555444332211 00001110
Q ss_pred c--------c-cccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCC
Q psy568 478 L--------S-PIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGR 548 (1614)
Q Consensus 478 ~--------~-p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~ 548 (1614)
. . ....++.+|++|||++... +..+.+....++|.+-+..+ .++.+|+++|+.. -.
T Consensus 122 ~~~~~~~~~~~l~~~~~~~viviDE~d~l~-~~~~~~~l~~l~~~~~~~~~------------~~v~vI~i~~~~~--~~ 186 (394)
T PRK00411 122 FDELFDKIAEYLDERDRVLIVALDDINYLF-EKEGNDVLYSLLRAHEEYPG------------ARIGVIGISSDLT--FL 186 (394)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEECCHhHhh-ccCCchHHHHHHHhhhccCC------------CeEEEEEEECCcc--hh
Confidence 0 0 0113567899999999855 22233334444443322111 1577888888764 12
Q ss_pred CCCcccccccc--cEEEecCCChhHHHHHHHHHHH
Q psy568 549 KPLSHRFLRHV--PVIYVDYPGETSLKQIYGTFSR 581 (1614)
Q Consensus 549 ~~l~~r~~r~f--~~i~i~~p~~~~l~~I~~~~~~ 581 (1614)
..++++..++| ..+.+++++.+++..|+...+.
T Consensus 187 ~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~ 221 (394)
T PRK00411 187 YILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVE 221 (394)
T ss_pred hhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHH
Confidence 23677776666 3689999999999999887654
No 125
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=98.36 E-value=7.1e-07 Score=107.31 Aligned_cols=117 Identities=17% Similarity=0.184 Sum_probs=67.2
Q ss_pred CCCEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCCHH----HHHhHhhcccceeecCCccccccccCCceEEEEe
Q psy568 416 HKPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTPE----LLLKTFDHYCEYRKTPNGVILSPIQLGKWLVLFC 491 (1614)
Q Consensus 416 ~~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~~~----~l~~~~~~~~~~~~~~~g~~~~p~~~gk~~vlfi 491 (1614)
+.++||+||||||||++++.+++.+ +.++..++++..+.+. +..+.+....... .+.+- .....|+||
T Consensus 116 ~~~iLL~GP~GsGKT~lAraLA~~l-~~pf~~~da~~L~~~gyvG~d~e~~L~~~~~~~---~~~l~----~a~~gIV~l 187 (413)
T TIGR00382 116 KSNILLIGPTGSGKTLLAQTLARIL-NVPFAIADATTLTEAGYVGEDVENILLKLLQAA---DYDVE----KAQKGIIYI 187 (413)
T ss_pred CceEEEECCCCcCHHHHHHHHHHhc-CCCeEEechhhccccccccccHHHHHHHHHHhC---cccHH----hcccceEEe
Confidence 5689999999999999999998777 6677777766543221 1111111111111 01111 123458999
Q ss_pred ccCCCCCcc---------ccCcccHHHHHHHHHHcCceee--CCCCceEeecCeEEEEeecC
Q psy568 492 DEINLPDMD---------KYATQRVISFLRQLIEQRGFYR--PADKQWVSLERIQCVGACNP 542 (1614)
Q Consensus 492 Ddin~p~~d---------~~g~q~~lelLrqlld~~~~~~--~~~~~~~~~~~~~~iaa~n~ 542 (1614)
||++...+. ..| ..+...|.++++ |.+-+ +..+......++.+|.|+|.
T Consensus 188 DEIdkl~~~~~~~s~~~dvsg-~~vq~~LL~iLe-G~~~~v~~~~gr~~~~~~~i~i~TsNi 247 (413)
T TIGR00382 188 DEIDKISRKSENPSITRDVSG-EGVQQALLKIIE-GTVANVPPQGGRKHPYQEFIQIDTSNI 247 (413)
T ss_pred cccchhchhhccccccccccc-hhHHHHHHHHhh-ccceecccCCCccccCCCeEEEEcCCc
Confidence 999954331 111 246666778886 55443 23344444556666777665
No 126
>KOG0728|consensus
Probab=98.36 E-value=1.1e-06 Score=93.31 Aligned_cols=144 Identities=24% Similarity=0.316 Sum_probs=91.1
Q ss_pred HHhcCCCEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCCHHHHHhHhhcccceeecCCccccccccCCceEEEEe
Q psy568 412 WLAEHKPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTPELLLKTFDHYCEYRKTPNGVILSPIQLGKWLVLFC 491 (1614)
Q Consensus 412 ~l~~~~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~~~~l~~~~~~~~~~~~~~~g~~~~p~~~gk~~vlfi 491 (1614)
-+...+.|||+||||+|||.+++..+... ...+++++ .++.+|+.+..-....+ -.++-+ +...+.++|.
T Consensus 177 GIaQPKGvlLygppgtGktLlaraVahht-~c~firvs-----gselvqk~igegsrmvr---elfvma-rehapsiifm 246 (404)
T KOG0728|consen 177 GIAQPKGVLLYGPPGTGKTLLARAVAHHT-DCTFIRVS-----GSELVQKYIGEGSRMVR---ELFVMA-REHAPSIIFM 246 (404)
T ss_pred CCCCCcceEEecCCCCchhHHHHHHHhhc-ceEEEEec-----hHHHHHHHhhhhHHHHH---HHHHHH-HhcCCceEee
Confidence 35567899999999999999888777644 44455553 33455555532111111 112222 2344589999
Q ss_pred ccCCCCCcccc-----Cc----ccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCCCccccccc---c
Q psy568 492 DEINLPDMDKY-----AT----QRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLRH---V 559 (1614)
Q Consensus 492 Ddin~p~~d~~-----g~----q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r~---f 559 (1614)
|||+....... |. ...+|+|.|+- ||- ...++.+|.|+|... -|+++++|- -
T Consensus 247 deidsigs~r~e~~~ggdsevqrtmlellnqld---gfe--------atknikvimatnrid-----ild~allrpgrid 310 (404)
T KOG0728|consen 247 DEIDSIGSSRVESGSGGDSEVQRTMLELLNQLD---GFE--------ATKNIKVIMATNRID-----ILDPALLRPGRID 310 (404)
T ss_pred ecccccccccccCCCCccHHHHHHHHHHHHhcc---ccc--------cccceEEEEeccccc-----cccHhhcCCCccc
Confidence 99996533211 12 23577777762 222 234788999999875 688888863 3
Q ss_pred cEEEecCCChhHHHHHHHHHHH
Q psy568 560 PVIYVDYPGETSLKQIYGTFSR 581 (1614)
Q Consensus 560 ~~i~i~~p~~~~l~~I~~~~~~ 581 (1614)
+-|.+|+|+.+....|+....+
T Consensus 311 rkiefp~p~e~ar~~ilkihsr 332 (404)
T KOG0728|consen 311 RKIEFPPPNEEARLDILKIHSR 332 (404)
T ss_pred ccccCCCCCHHHHHHHHHHhhh
Confidence 3688999999998888765443
No 127
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.36 E-value=3.1e-06 Score=106.03 Aligned_cols=163 Identities=17% Similarity=0.192 Sum_probs=99.3
Q ss_pred hhHHHHHHHHHhcCC--CE-EEecCCCCchHHHHHHHHhcCC---------CCceEEEEcccCCCHHHHHhHhhccccee
Q psy568 403 VRHESLLYTWLAEHK--PL-VLCGPPGSGKTMTLLSALRALP---------DMEVVSLNFSSATTPELLLKTFDHYCEYR 470 (1614)
Q Consensus 403 ~r~~~ll~~~l~~~~--~v-LL~Gp~GtGKT~lv~~~~~~l~---------~~~~~~i~~s~~t~~~~l~~~~~~~~~~~ 470 (1614)
.+...+|..++.... ++ +|+|+||||||++++.+++.+. ...++.+||....++..+...+-..+...
T Consensus 765 eeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYqvI~qqL~g~ 844 (1164)
T PTZ00112 765 KEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQVLYKQLFNK 844 (1164)
T ss_pred HHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHHHHHHHHcCC
Confidence 344556666665433 34 5999999999999999986542 23467899987777765544443222100
Q ss_pred ecCCcc--------ccc--cccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEee
Q psy568 471 KTPNGV--------ILS--PIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGAC 540 (1614)
Q Consensus 471 ~~~~g~--------~~~--p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~ 540 (1614)
.-..|. ++. +...+...||+||||+..... . -++|..+++.... . . ..+.+||.+
T Consensus 845 ~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK---~---QDVLYnLFR~~~~--s-~------SKLiLIGIS 909 (1164)
T PTZ00112 845 KPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITK---T---QKVLFTLFDWPTK--I-N------SKLVLIAIS 909 (1164)
T ss_pred CCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCcc---H---HHHHHHHHHHhhc--c-C------CeEEEEEec
Confidence 000111 010 111233468999999975432 1 2445555553111 1 1 247789999
Q ss_pred cCCCCCCCCCCcccccccccE--EEecCCChhHHHHHHHHHHHh
Q psy568 541 NPPTDPGRKPLSHRFLRHVPV--IYVDYPGETSLKQIYGTFSRA 582 (1614)
Q Consensus 541 n~~~~~g~~~l~~r~~r~f~~--i~i~~p~~~~l~~I~~~~~~~ 582 (1614)
|+-. -...+.+|+.+||.. +.+++++.+++..|+...+..
T Consensus 910 NdlD--LperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~ 951 (1164)
T PTZ00112 910 NTMD--LPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLEN 951 (1164)
T ss_pred Cchh--cchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHh
Confidence 8643 223567788888764 788999999999998876654
No 128
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.36 E-value=5.6e-06 Score=103.98 Aligned_cols=141 Identities=16% Similarity=0.226 Sum_probs=90.9
Q ss_pred HHHHHHhcC---CCEEEecCCCCchHHHHHHHHhcCCCC-----------------------ceEEEEcccCCCHHHHHh
Q psy568 408 LLYTWLAEH---KPLVLCGPPGSGKTMTLLSALRALPDM-----------------------EVVSLNFSSATTPELLLK 461 (1614)
Q Consensus 408 ll~~~l~~~---~~vLL~Gp~GtGKT~lv~~~~~~l~~~-----------------------~~~~i~~s~~t~~~~l~~ 461 (1614)
.|..++..+ +.+||+||+|||||++++.+++.+... .++.++-++.+..+.+..
T Consensus 27 ~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~DvlEidaAs~~gVd~IRe 106 (709)
T PRK08691 27 ALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLLEIDAASNTGIDNIRE 106 (709)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceEEEeccccCCHHHHHH
Confidence 455555555 358999999999999999888765211 123344344455555555
Q ss_pred HhhcccceeecCCccccccccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeec
Q psy568 462 TFDHYCEYRKTPNGVILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACN 541 (1614)
Q Consensus 462 ~~~~~~~~~~~~~g~~~~p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n 541 (1614)
.++. + .+.|. .|++-|++|||+++... .....|+..++.. ...+.||.+++
T Consensus 107 lle~-a---------~~~P~-~gk~KVIIIDEad~Ls~------~A~NALLKtLEEP------------p~~v~fILaTt 157 (709)
T PRK08691 107 VLEN-A---------QYAPT-AGKYKVYIIDEVHMLSK------SAFNAMLKTLEEP------------PEHVKFILATT 157 (709)
T ss_pred HHHH-H---------Hhhhh-hCCcEEEEEECccccCH------HHHHHHHHHHHhC------------CCCcEEEEEeC
Confidence 4432 1 12232 35567888999998432 3344455555531 12466777776
Q ss_pred CCCCCCCCCCcccccccccEEEecCCChhHHHHHHHHHHHh
Q psy568 542 PPTDPGRKPLSHRFLRHVPVIYVDYPGETSLKQIYGTFSRA 582 (1614)
Q Consensus 542 ~~~~~g~~~l~~r~~r~f~~i~i~~p~~~~l~~I~~~~~~~ 582 (1614)
.+. .+++.+++||..+.+..++.+++...+..++..
T Consensus 158 d~~-----kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~k 193 (709)
T PRK08691 158 DPH-----KVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDS 193 (709)
T ss_pred Ccc-----ccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHH
Confidence 543 577788899999999999999998888776653
No 129
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.35 E-value=4.5e-06 Score=109.41 Aligned_cols=219 Identities=10% Similarity=0.086 Sum_probs=129.0
Q ss_pred CcceeeeCcchhhHHHHHHHHHhcCCCEEEecCCCCchHHHHHHHHhcC--CCCceEEEEcccCCCHHHHHhHhhccc--
Q psy568 392 ASDVVVPTLDTVRHESLLYTWLAEHKPLVLCGPPGSGKTMTLLSALRAL--PDMEVVSLNFSSATTPELLLKTFDHYC-- 467 (1614)
Q Consensus 392 ~~~~~vpT~~t~r~~~ll~~~l~~~~~vLL~Gp~GtGKT~lv~~~~~~l--~~~~~~~i~~s~~t~~~~l~~~~~~~~-- 467 (1614)
+.+++-..+.+.+....+..+...+.||||.|++||||+++++.+.... .+.+++.+||..... +.+...+-+..
T Consensus 324 ~~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~-~~~~~elfg~~~~ 402 (638)
T PRK11388 324 FDHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPD-EALAEEFLGSDRT 402 (638)
T ss_pred ccceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCCh-HHHHHHhcCCCCc
Confidence 3445555666777888888899999999999999999999998877654 346899999987654 22222221111
Q ss_pred ceeecCCccccccccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCC--
Q psy568 468 EYRKTPNGVILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTD-- 545 (1614)
Q Consensus 468 ~~~~~~~g~~~~p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~-- 545 (1614)
.......|.+-.+ ....+|||||+.. +......|.++++.+.+...+ .......++++|+|++.+-.
T Consensus 403 ~~~~~~~g~~~~a----~~GtL~ldei~~l------~~~~Q~~Ll~~l~~~~~~~~~-~~~~~~~~~riI~~t~~~l~~~ 471 (638)
T PRK11388 403 DSENGRLSKFELA----HGGTLFLEKVEYL------SPELQSALLQVLKTGVITRLD-SRRLIPVDVRVIATTTADLAML 471 (638)
T ss_pred CccCCCCCceeEC----CCCEEEEcChhhC------CHHHHHHHHHHHhcCcEEeCC-CCceEEeeEEEEEeccCCHHHH
Confidence 0111112322222 2356888999973 333566777777776655432 22222347999999986420
Q ss_pred CCCCCCcccccccccEEEecCCCh----hHHHHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHHHhhcCCCCCCccc
Q psy568 546 PGRKPLSHRFLRHVPVIYVDYPGE----TSLKQIYGTFSRAMLRLIPPLRGYADALTNAMVELYLASQEKFTQDMQPHYV 621 (1614)
Q Consensus 546 ~g~~~l~~r~~r~f~~i~i~~p~~----~~l~~I~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~hY~ 621 (1614)
.....+.+.|..+++.+.+.-|.- +++..++..++..+...... . ..+....++... .-+|.
T Consensus 472 ~~~~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~--~--~~~s~~a~~~L~----------~y~WP 537 (638)
T PRK11388 472 VEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFST--R--LKIDDDALARLV----------SYRWP 537 (638)
T ss_pred HhcCCChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCC--C--CCcCHHHHHHHH----------cCCCC
Confidence 012345566777888777766664 34555555554433211000 0 012222222111 11566
Q ss_pred cChhhHHHHhhhhhc
Q psy568 622 YSPREMTRWVRGICE 636 (1614)
Q Consensus 622 F~lRdl~~v~~~i~~ 636 (1614)
-|+|+|.++++.++.
T Consensus 538 GNvreL~~~l~~~~~ 552 (638)
T PRK11388 538 GNDFELRSVIENLAL 552 (638)
T ss_pred ChHHHHHHHHHHHHH
Confidence 799999999998664
No 130
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=1e-05 Score=102.89 Aligned_cols=70 Identities=23% Similarity=0.431 Sum_probs=54.6
Q ss_pred hccCCccEEEeecCCCChHHHHHHHHHHcCCeEEEEEecCCCC--hhcHHHHHHHHHHHhccCCCcEEEEEcCC
Q psy568 753 FRQPQGHLLLIGVSGAGKTTLSRFVAFMNGLSVFQIRAHNKYT--GADFDEDLRTVLRRSGCKNEKIAFLLDES 824 (1614)
Q Consensus 753 l~~p~gh~LLvG~~GsGKtsl~rlaA~~~~~~~~~i~~~~~~~--~~df~~~lk~~l~~ag~~~~~~v~ll~d~ 824 (1614)
++.|. .+||.||+|+|||.+++.+|...+.+++.+....-.+ +.+....++.++..|- +..|+++++|+-
T Consensus 273 ~~~~~-giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk~vGesek~ir~~F~~A~-~~~p~iiFiDEi 344 (494)
T COG0464 273 LRPPK-GVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSKWVGESEKNIRELFEKAR-KLAPSIIFIDEI 344 (494)
T ss_pred CCCCC-eeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhccccchHHHHHHHHHHHHH-cCCCcEEEEEch
Confidence 34444 5999999999999999999999999999998763322 3444556778888774 678888888874
No 131
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.34 E-value=1.8e-06 Score=106.83 Aligned_cols=140 Identities=14% Similarity=0.228 Sum_probs=94.6
Q ss_pred HHHHHHhcCC---CEEEecCCCCchHHHHHHHHhcCCCC----------------------------ceEEEEcccCCCH
Q psy568 408 LLYTWLAEHK---PLVLCGPPGSGKTMTLLSALRALPDM----------------------------EVVSLNFSSATTP 456 (1614)
Q Consensus 408 ll~~~l~~~~---~vLL~Gp~GtGKT~lv~~~~~~l~~~----------------------------~~~~i~~s~~t~~ 456 (1614)
.|..++..++ .+||+||+|+|||++++.+++.+... .++.++-++.+..
T Consensus 27 ~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~hpDviEIdAas~~gV 106 (700)
T PRK12323 27 ALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGRFVDYIEMDAASNRGV 106 (700)
T ss_pred HHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCCCCcceEecccccCCH
Confidence 4555566553 46999999999999999998876320 2344554445556
Q ss_pred HHHHhHhhcccceeecCCccccccccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEE
Q psy568 457 ELLLKTFDHYCEYRKTPNGVILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQC 536 (1614)
Q Consensus 457 ~~l~~~~~~~~~~~~~~~g~~~~p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~ 536 (1614)
+++...++. ..+.|. .|++-|++|||+|+-..+ ....|.-.++. ...++.|
T Consensus 107 DdIReLie~----------~~~~P~-~gr~KViIIDEah~Ls~~------AaNALLKTLEE------------PP~~v~F 157 (700)
T PRK12323 107 DEMAQLLDK----------AVYAPT-AGRFKVYMIDEVHMLTNH------AFNAMLKTLEE------------PPEHVKF 157 (700)
T ss_pred HHHHHHHHH----------HHhchh-cCCceEEEEEChHhcCHH------HHHHHHHhhcc------------CCCCceE
Confidence 666555532 123333 467788999999995433 33333334443 1135677
Q ss_pred EEeecCCCCCCCCCCcccccccccEEEecCCChhHHHHHHHHHHH
Q psy568 537 VGACNPPTDPGRKPLSHRFLRHVPVIYVDYPGETSLKQIYGTFSR 581 (1614)
Q Consensus 537 iaa~n~~~~~g~~~l~~r~~r~f~~i~i~~p~~~~l~~I~~~~~~ 581 (1614)
|.+++.+. .|.+.+++||..+.+..++.+++...+..++.
T Consensus 158 ILaTtep~-----kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~ 197 (700)
T PRK12323 158 ILATTDPQ-----KIPVTVLSRCLQFNLKQMPPGHIVSHLDAILG 197 (700)
T ss_pred EEEeCChH-----hhhhHHHHHHHhcccCCCChHHHHHHHHHHHH
Confidence 77777654 68899999999999999999999888777654
No 132
>PRK06893 DNA replication initiation factor; Validated
Probab=98.34 E-value=5.1e-06 Score=93.89 Aligned_cols=132 Identities=9% Similarity=0.088 Sum_probs=74.8
Q ss_pred CCC-EEEecCCCCchHHHHHHHHhcC--CCCceEEEEcccCCCHHHHHhHhhcccceeecCCccccccccCCceEEEEec
Q psy568 416 HKP-LVLCGPPGSGKTMTLLSALRAL--PDMEVVSLNFSSATTPELLLKTFDHYCEYRKTPNGVILSPIQLGKWLVLFCD 492 (1614)
Q Consensus 416 ~~~-vLL~Gp~GtGKT~lv~~~~~~l--~~~~~~~i~~s~~t~~~~l~~~~~~~~~~~~~~~g~~~~p~~~gk~~vlfiD 492 (1614)
..| ++|+||||||||+++..+++.. .+.....++++..... ....++ + . .+.-+++||
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~~~--~~~~~~----------~-----~--~~~dlLilD 98 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQYF--SPAVLE----------N-----L--EQQDLVCLD 98 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhhhh--hHHHHh----------h-----c--ccCCEEEEe
Confidence 345 6899999999999998888654 2344555555321100 001111 0 0 112367789
Q ss_pred cCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCCCccccccccc---EEEecCCCh
Q psy568 493 EINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLRHVP---VIYVDYPGE 569 (1614)
Q Consensus 493 din~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r~f~---~i~i~~p~~ 569 (1614)
|++....+.......+.++....+.++ .+.++++..+|. .-....+++.+|+. ++.++.|+.
T Consensus 99 Di~~~~~~~~~~~~l~~l~n~~~~~~~-------------~illits~~~p~--~l~~~~~~L~sRl~~g~~~~l~~pd~ 163 (229)
T PRK06893 99 DLQAVIGNEEWELAIFDLFNRIKEQGK-------------TLLLISADCSPH--ALSIKLPDLASRLTWGEIYQLNDLTD 163 (229)
T ss_pred ChhhhcCChHHHHHHHHHHHHHHHcCC-------------cEEEEeCCCChH--HccccchhHHHHHhcCCeeeCCCCCH
Confidence 999854332112223344444433211 122344444443 22234478888887 889999999
Q ss_pred hHHHHHHHHHHH
Q psy568 570 TSLKQIYGTFSR 581 (1614)
Q Consensus 570 ~~l~~I~~~~~~ 581 (1614)
+++..|+.....
T Consensus 164 e~~~~iL~~~a~ 175 (229)
T PRK06893 164 EQKIIVLQRNAY 175 (229)
T ss_pred HHHHHHHHHHHH
Confidence 999999876554
No 133
>KOG0991|consensus
Probab=98.34 E-value=7.2e-07 Score=93.95 Aligned_cols=163 Identities=23% Similarity=0.371 Sum_probs=110.7
Q ss_pred eecCCCCccccccccccCCcceeeeCcchhhHHHHHHHHHhcC--CCEEEecCCCCchHHHHHHHHhcCCCC----ceEE
Q psy568 374 VPWSNKVPQIEVETQKVAASDVVVPTLDTVRHESLLYTWLAEH--KPLVLCGPPGSGKTMTLLSALRALPDM----EVVS 447 (1614)
Q Consensus 374 ~~w~~~~~~~~~~~~~~~~~~~~vpT~~t~r~~~ll~~~l~~~--~~vLL~Gp~GtGKT~lv~~~~~~l~~~----~~~~ 447 (1614)
.+|.+++.+..+. -+|-..+|+. .+..+...| -|+++.||||||||+.+..+++.+.+. .+..
T Consensus 15 l~wVeKYrP~~l~--------dIVGNe~tv~---rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLE 83 (333)
T KOG0991|consen 15 LPWVEKYRPSVLQ--------DIVGNEDTVE---RLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLE 83 (333)
T ss_pred chHHHhhCchHHH--------HhhCCHHHHH---HHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhh
Confidence 3477766544332 2455555544 445556655 479999999999999999999887663 3568
Q ss_pred EEcccCCCHHHHHhHhhcccceeecCCccccccccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCc
Q psy568 448 LNFSSATTPELLLKTFDHYCEYRKTPNGVILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQ 527 (1614)
Q Consensus 448 i~~s~~t~~~~l~~~~~~~~~~~~~~~g~~~~p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~ 527 (1614)
+|.|..-..+.+...+.....++ +.++| |+.-|+.+||.+. -+......||.-++ +|..
T Consensus 84 LNASdeRGIDvVRn~IK~FAQ~k-----v~lp~---grhKIiILDEADS------MT~gAQQAlRRtME---iyS~---- 142 (333)
T KOG0991|consen 84 LNASDERGIDVVRNKIKMFAQKK-----VTLPP---GRHKIIILDEADS------MTAGAQQALRRTME---IYSN---- 142 (333)
T ss_pred ccCccccccHHHHHHHHHHHHhh-----ccCCC---CceeEEEeeccch------hhhHHHHHHHHHHH---HHcc----
Confidence 89998888887877776554433 23333 5566667799986 23334445788877 3553
Q ss_pred eEeecCeEEEEeecCCCCCCCCCCcccccccccEEEecCCChhHHHHHHHH
Q psy568 528 WVSLERIQCVGACNPPTDPGRKPLSHRFLRHVPVIYVDYPGETSLKQIYGT 578 (1614)
Q Consensus 528 ~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r~f~~i~i~~p~~~~l~~I~~~ 578 (1614)
..+|.-+||... .+-+.+.+|+.++.+...++..+..-+..
T Consensus 143 -----ttRFalaCN~s~-----KIiEPIQSRCAiLRysklsd~qiL~Rl~~ 183 (333)
T KOG0991|consen 143 -----TTRFALACNQSE-----KIIEPIQSRCAILRYSKLSDQQILKRLLE 183 (333)
T ss_pred -----cchhhhhhcchh-----hhhhhHHhhhHhhhhcccCHHHHHHHHHH
Confidence 367888998765 56777889999999998888765544333
No 134
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.33 E-value=8e-06 Score=103.51 Aligned_cols=217 Identities=14% Similarity=0.165 Sum_probs=128.4
Q ss_pred eeeeCcchhhHHHHHHHHHhcCCCEEEecCCCCchHHHHHHHHhcCC--CCceEEEEcccCCCHHHHHhHhhcccc----
Q psy568 395 VVVPTLDTVRHESLLYTWLAEHKPLVLCGPPGSGKTMTLLSALRALP--DMEVVSLNFSSATTPELLLKTFDHYCE---- 468 (1614)
Q Consensus 395 ~~vpT~~t~r~~~ll~~~l~~~~~vLL~Gp~GtGKT~lv~~~~~~l~--~~~~~~i~~s~~t~~~~l~~~~~~~~~---- 468 (1614)
++-.++.+.+....+..+...+.||++.|++|||||.+++.+..... +.+++.++|+.... +.+...+.+.-.
T Consensus 140 lig~s~~~~~l~~~~~~~~~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~-~~~~~~lfg~~~g~~~ 218 (469)
T PRK10923 140 IIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPK-DLIESELFGHEKGAFT 218 (469)
T ss_pred ceecCHHHHHHHHHHHHHhccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCH-HHHHHHhcCCCCCCCC
Confidence 34445566667777778888999999999999999998877766543 46789999986633 333333221110
Q ss_pred -eeecCCccccccccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCC--
Q psy568 469 -YRKTPNGVILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTD-- 545 (1614)
Q Consensus 469 -~~~~~~g~~~~p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~-- 545 (1614)
......|.+..+ .| ..+||||++. -+......|.++++.+.+....+.. ....++++|+|++.+-.
T Consensus 219 ~~~~~~~g~~~~a--~~--Gtl~l~~i~~------l~~~~q~~L~~~l~~~~~~~~~~~~-~~~~~~rii~~~~~~l~~~ 287 (469)
T PRK10923 219 GANTIRQGRFEQA--DG--GTLFLDEIGD------MPLDVQTRLLRVLADGQFYRVGGYA-PVKVDVRIIAATHQNLEQR 287 (469)
T ss_pred CCCcCCCCCeeEC--CC--CEEEEecccc------CCHHHHHHHHHHHhcCcEEeCCCCC-eEEeeEEEEEeCCCCHHHH
Confidence 000012333332 12 3578899987 3444666777888887776543333 22348999999976420
Q ss_pred CCCCCCcccccccccEEEecCCCh----hHHHHHHHHHHHhhhhcc-hhhhhhHHHHHHHHHHHHHHHHhhcCCCCCCcc
Q psy568 546 PGRKPLSHRFLRHVPVIYVDYPGE----TSLKQIYGTFSRAMLRLI-PPLRGYADALTNAMVELYLASQEKFTQDMQPHY 620 (1614)
Q Consensus 546 ~g~~~l~~r~~r~f~~i~i~~p~~----~~l~~I~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~hY 620 (1614)
.....+.+.|..++..+.+.-|.- +++..+...++..+.... ..+..+.......+. .-+|
T Consensus 288 ~~~~~~~~~L~~~l~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~--------------~~~w 353 (469)
T PRK10923 288 VQEGKFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALT--------------RLAW 353 (469)
T ss_pred HHcCCchHHHHHHhcceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHH--------------hCCC
Confidence 012356777888888766666653 445555555544332110 011111111111111 1167
Q ss_pred ccChhhHHHHhhhhhcc
Q psy568 621 VYSPREMTRWVRGICEA 637 (1614)
Q Consensus 621 ~F~lRdl~~v~~~i~~~ 637 (1614)
.-|+|+|.++++.+...
T Consensus 354 pgNv~eL~~~i~~~~~~ 370 (469)
T PRK10923 354 PGNVRQLENTCRWLTVM 370 (469)
T ss_pred CChHHHHHHHHHHHHHh
Confidence 77999999999987753
No 135
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.32 E-value=4.5e-06 Score=103.53 Aligned_cols=141 Identities=13% Similarity=0.188 Sum_probs=94.6
Q ss_pred HHHHHHhcC---CCEEEecCCCCchHHHHHHHHhcCCC---------------------------CceEEEEcccCCCHH
Q psy568 408 LLYTWLAEH---KPLVLCGPPGSGKTMTLLSALRALPD---------------------------MEVVSLNFSSATTPE 457 (1614)
Q Consensus 408 ll~~~l~~~---~~vLL~Gp~GtGKT~lv~~~~~~l~~---------------------------~~~~~i~~s~~t~~~ 457 (1614)
.+..++..+ +++||+||+|||||++++.+++.+.. ..++.++-.+.++.+
T Consensus 32 ~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~h~Dv~eidaas~~~vd 111 (507)
T PRK06645 32 VLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHNHPDIIEIDAASKTSVD 111 (507)
T ss_pred HHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCCCCcEEEeeccCCCCHH
Confidence 344444554 47999999999999999999876621 123344444556666
Q ss_pred HHHhHhhcccceeecCCccccccccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEE
Q psy568 458 LLLKTFDHYCEYRKTPNGVILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCV 537 (1614)
Q Consensus 458 ~l~~~~~~~~~~~~~~~g~~~~p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~i 537 (1614)
++...++.. .+.|. .|++-|++|||+++-. ......|...++.. .+.+.||
T Consensus 112 ~Ir~iie~a----------~~~P~-~~~~KVvIIDEa~~Ls------~~a~naLLk~LEep------------p~~~vfI 162 (507)
T PRK06645 112 DIRRIIESA----------EYKPL-QGKHKIFIIDEVHMLS------KGAFNALLKTLEEP------------PPHIIFI 162 (507)
T ss_pred HHHHHHHHH----------Hhccc-cCCcEEEEEEChhhcC------HHHHHHHHHHHhhc------------CCCEEEE
Confidence 676665431 12343 3566788899999843 33455555555531 1356677
Q ss_pred EeecCCCCCCCCCCcccccccccEEEecCCChhHHHHHHHHHHHh
Q psy568 538 GACNPPTDPGRKPLSHRFLRHVPVIYVDYPGETSLKQIYGTFSRA 582 (1614)
Q Consensus 538 aa~n~~~~~g~~~l~~r~~r~f~~i~i~~p~~~~l~~I~~~~~~~ 582 (1614)
.+++.. ..+++.+.+|+..+.+..++.+++..++..++..
T Consensus 163 ~aTte~-----~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~ 202 (507)
T PRK06645 163 FATTEV-----QKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQ 202 (507)
T ss_pred EEeCCh-----HHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHH
Confidence 666543 3588889999999999999999999998877653
No 136
>KOG0996|consensus
Probab=98.32 E-value=0.037 Score=71.75 Aligned_cols=24 Identities=25% Similarity=0.556 Sum_probs=19.4
Q ss_pred EEEeecCCCChHHHHHHHHHHcCC
Q psy568 760 LLLIGVSGAGKTTLSRFVAFMNGL 783 (1614)
Q Consensus 760 ~LLvG~~GsGKtsl~rlaA~~~~~ 783 (1614)
-.+|||.||||+-+.--.-|.+|+
T Consensus 111 taIvGPNGSGKSNVIDsmLFVFGf 134 (1293)
T KOG0996|consen 111 TAIVGPNGSGKSNVIDSMLFVFGF 134 (1293)
T ss_pred eeeECCCCCCchHHHHHHHHHhhh
Confidence 468999999999888777666664
No 137
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.31 E-value=4.8e-06 Score=109.79 Aligned_cols=220 Identities=11% Similarity=0.127 Sum_probs=127.3
Q ss_pred CcceeeeCcchhhHHHHHHHHHhcCCCEEEecCCCCchHHHHHHHHhcC--CCCceEEEEcccCCCHHHHHhHhhcc---
Q psy568 392 ASDVVVPTLDTVRHESLLYTWLAEHKPLVLCGPPGSGKTMTLLSALRAL--PDMEVVSLNFSSATTPELLLKTFDHY--- 466 (1614)
Q Consensus 392 ~~~~~vpT~~t~r~~~ll~~~l~~~~~vLL~Gp~GtGKT~lv~~~~~~l--~~~~~~~i~~s~~t~~~~l~~~~~~~--- 466 (1614)
+.+++-..+.+.+....+..+...+.||||+||+|||||.+++.+.... .+.+++.++|..... ..+...+-+.
T Consensus 375 ~~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~-~~~~~~lfg~~~~ 453 (686)
T PRK15429 375 FGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPA-GLLESDLFGHERG 453 (686)
T ss_pred ccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCCh-hHhhhhhcCcccc
Confidence 3344444555666667788888899999999999999999988776543 357899999986543 3222222111
Q ss_pred -cce-eecCCccccccccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCC
Q psy568 467 -CEY-RKTPNGVILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPT 544 (1614)
Q Consensus 467 -~~~-~~~~~g~~~~p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~ 544 (1614)
... .....|.+-.+ ...++|||||... +.....-|..+++.+.+...+... ....++++|++++.+-
T Consensus 454 ~~~g~~~~~~g~le~a----~~GtL~Ldei~~L------~~~~Q~~L~~~l~~~~~~~~g~~~-~~~~~~RiI~~t~~~l 522 (686)
T PRK15429 454 AFTGASAQRIGRFELA----DKSSLFLDEVGDM------PLELQPKLLRVLQEQEFERLGSNK-IIQTDVRLIAATNRDL 522 (686)
T ss_pred cccccccchhhHHHhc----CCCeEEEechhhC------CHHHHHHHHHHHHhCCEEeCCCCC-cccceEEEEEeCCCCH
Confidence 000 00001222111 2357888999983 344667777788877765533222 2234799999998752
Q ss_pred C--CCCCCCcccccccccEEEecCCChh----HHHHHHHHHHHhhhhcc-hhhhhhHHHHHHHHHHHHHHHHhhcCCCCC
Q psy568 545 D--PGRKPLSHRFLRHVPVIYVDYPGET----SLKQIYGTFSRAMLRLI-PPLRGYADALTNAMVELYLASQEKFTQDMQ 617 (1614)
Q Consensus 545 ~--~g~~~l~~r~~r~f~~i~i~~p~~~----~l~~I~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 617 (1614)
. .....+...|..+++++.+.-|.-. ++-.+.+.++..+.... ..+.. +....++.. . .
T Consensus 523 ~~~~~~~~f~~~L~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~----~s~~al~~L----~------~ 588 (686)
T PRK15429 523 KKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDS----IPAETLRTL----S------N 588 (686)
T ss_pred HHHHHcCcccHHHHhccCeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCC----cCHHHHHHH----H------h
Confidence 0 1233456667777777777766643 34444444443321100 01111 111121111 1 1
Q ss_pred CccccChhhHHHHhhhhhcc
Q psy568 618 PHYVYSPREMTRWVRGICEA 637 (1614)
Q Consensus 618 ~hY~F~lRdl~~v~~~i~~~ 637 (1614)
-+|.-|+|+|.++++..+..
T Consensus 589 y~WPGNvrEL~~~i~~a~~~ 608 (686)
T PRK15429 589 MEWPGNVRELENVIERAVLL 608 (686)
T ss_pred CCCCCcHHHHHHHHHHHHHh
Confidence 26777999999999987753
No 138
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.31 E-value=4.1e-06 Score=95.05 Aligned_cols=166 Identities=12% Similarity=0.074 Sum_probs=93.1
Q ss_pred hcCCCEEEecCCCCchHHHHHHHHhcC--CCCceEEEEcccCCCHHHHHhHhhcccceeecCCccccccccCCceEEEEe
Q psy568 414 AEHKPLVLCGPPGSGKTMTLLSALRAL--PDMEVVSLNFSSATTPELLLKTFDHYCEYRKTPNGVILSPIQLGKWLVLFC 491 (1614)
Q Consensus 414 ~~~~~vLL~Gp~GtGKT~lv~~~~~~l--~~~~~~~i~~s~~t~~~~l~~~~~~~~~~~~~~~g~~~~p~~~gk~~vlfi 491 (1614)
..+.+++|+||+|||||++++.+.... .+..++.++|+..... ....+.. .. + .-+++|
T Consensus 36 ~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~---------------~~-~-~~lLvI 96 (226)
T TIGR03420 36 KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQA--DPEVLEG---------------LE-Q-ADLVCL 96 (226)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHh--HHHHHhh---------------cc-c-CCEEEE
Confidence 456789999999999999999888754 2456777777654321 1111110 00 1 136778
Q ss_pred ccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCCCc-ccccccc---cEEEecCC
Q psy568 492 DEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLS-HRFLRHV---PVIYVDYP 567 (1614)
Q Consensus 492 Ddin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~-~r~~r~f---~~i~i~~p 567 (1614)
||++....+.. ..+.|..+++.. +.. +..+|.|++.+. ....+. +++.++| ..+.++.|
T Consensus 97 Ddi~~l~~~~~----~~~~L~~~l~~~--~~~---------~~~iIits~~~~--~~~~~~~~~L~~r~~~~~~i~l~~l 159 (226)
T TIGR03420 97 DDVEAIAGQPE----WQEALFHLYNRV--REA---------GGRLLIAGRAAP--AQLPLRLPDLRTRLAWGLVFQLPPL 159 (226)
T ss_pred eChhhhcCChH----HHHHHHHHHHHH--HHc---------CCeEEEECCCCh--HHCCcccHHHHHHHhcCeeEecCCC
Confidence 99998433211 133444444421 110 123555665432 111222 6677676 37889999
Q ss_pred ChhHHHHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHHHhhcCCCCCCccccChhhHHHHhhhhhc
Q psy568 568 GETSLKQIYGTFSRAMLRLIPPLRGYADALTNAMVELYLASQEKFTQDMQPHYVYSPREMTRWVRGICE 636 (1614)
Q Consensus 568 ~~~~l~~I~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~hY~F~lRdl~~v~~~i~~ 636 (1614)
+.+++..++..+.... . ..+.....+.+.. |+.-|+|++.++++.+-.
T Consensus 160 ~~~e~~~~l~~~~~~~-~-----~~~~~~~l~~L~~---------------~~~gn~r~L~~~l~~~~~ 207 (226)
T TIGR03420 160 SDEEKIAALQSRAARR-G-----LQLPDEVADYLLR---------------HGSRDMGSLMALLDALDR 207 (226)
T ss_pred CHHHHHHHHHHHHHHc-C-----CCCCHHHHHHHHH---------------hccCCHHHHHHHHHHHHH
Confidence 9999888876543321 0 0111222222211 345589999999887654
No 139
>KOG0729|consensus
Probab=98.31 E-value=9.7e-07 Score=94.38 Aligned_cols=151 Identities=21% Similarity=0.333 Sum_probs=94.9
Q ss_pred HHHHHHHHhcCCCEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCCHHHHHhHhhcccceeecCCccccccccCCc
Q psy568 406 ESLLYTWLAEHKPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTPELLLKTFDHYCEYRKTPNGVILSPIQLGK 485 (1614)
Q Consensus 406 ~~ll~~~l~~~~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~~~~l~~~~~~~~~~~~~~~g~~~~p~~~gk 485 (1614)
..+..+-+...+.|||+||||||||.+++..+... +--++++- .++.+|+.+..-..+. .-++.-++..|
T Consensus 201 erfv~lgidppkgvllygppgtgktl~aravanrt-dacfirvi-----gselvqkyvgegarmv----relf~martkk 270 (435)
T KOG0729|consen 201 ERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRT-DACFIRVI-----GSELVQKYVGEGARMV----RELFEMARTKK 270 (435)
T ss_pred HHHhhcCCCCCCceEEeCCCCCchhHHHHHHhccc-CceEEeeh-----hHHHHHHHhhhhHHHH----HHHHHHhcccc
Confidence 34556677888999999999999998877666544 55556553 3344444432111100 01122223456
Q ss_pred eEEEEeccCCCCCcccc--C---cc----cHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCCCccccc
Q psy568 486 WLVLFCDEINLPDMDKY--A---TQ----RVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFL 556 (1614)
Q Consensus 486 ~~vlfiDdin~p~~d~~--g---~q----~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~ 556 (1614)
-|++|+|||+-..-..| | .. ..+|++.|+- | ||+. .|+.++.|+|.|. .|+|+++
T Consensus 271 aciiffdeidaiggarfddg~ggdnevqrtmleli~qld---g-fdpr-------gnikvlmatnrpd-----tldpall 334 (435)
T KOG0729|consen 271 ACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLD---G-FDPR-------GNIKVLMATNRPD-----TLDPALL 334 (435)
T ss_pred eEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhcc---C-CCCC-------CCeEEEeecCCCC-----CcCHhhc
Confidence 79999999997543332 2 22 2456666652 2 4433 2688889999886 6899888
Q ss_pred c---cccEEEecCCChhHHHHHHHHHHHh
Q psy568 557 R---HVPVIYVDYPGETSLKQIYGTFSRA 582 (1614)
Q Consensus 557 r---~f~~i~i~~p~~~~l~~I~~~~~~~ 582 (1614)
| .=+-+.+..|+.+...+||....+.
T Consensus 335 rpgrldrkvef~lpdlegrt~i~kihaks 363 (435)
T KOG0729|consen 335 RPGRLDRKVEFGLPDLEGRTHIFKIHAKS 363 (435)
T ss_pred CCcccccceeccCCcccccceeEEEeccc
Confidence 6 3345778889988888887654443
No 140
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.28 E-value=4.2e-06 Score=107.04 Aligned_cols=140 Identities=16% Similarity=0.218 Sum_probs=92.0
Q ss_pred HHHHHhcC---CCEEEecCCCCchHHHHHHHHhcCCCCc-----------------------eEEEEcccCCCHHHHHhH
Q psy568 409 LYTWLAEH---KPLVLCGPPGSGKTMTLLSALRALPDME-----------------------VVSLNFSSATTPELLLKT 462 (1614)
Q Consensus 409 l~~~l~~~---~~vLL~Gp~GtGKT~lv~~~~~~l~~~~-----------------------~~~i~~s~~t~~~~l~~~ 462 (1614)
|..++..| +..||+||+|||||++++.+++.+.... ++.++-++......+...
T Consensus 28 LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviEidAas~~kVDdIReL 107 (944)
T PRK14949 28 LTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIEVDAASRTKVDDTREL 107 (944)
T ss_pred HHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEEeccccccCHHHHHHH
Confidence 44555554 3358999999999999999998774321 112222222344445443
Q ss_pred hhcccceeecCCccccccccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecC
Q psy568 463 FDHYCEYRKTPNGVILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNP 542 (1614)
Q Consensus 463 ~~~~~~~~~~~~g~~~~p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~ 542 (1614)
++. + .+.|. .|++-|++|||+++- +....+.|+..++.- ..+++||.+++.
T Consensus 108 ie~-v---------~~~P~-~gk~KViIIDEAh~L------T~eAqNALLKtLEEP------------P~~vrFILaTTe 158 (944)
T PRK14949 108 LDN-V---------QYRPS-RGRFKVYLIDEVHML------SRSSFNALLKTLEEP------------PEHVKFLLATTD 158 (944)
T ss_pred HHH-H---------Hhhhh-cCCcEEEEEechHhc------CHHHHHHHHHHHhcc------------CCCeEEEEECCC
Confidence 321 1 12333 467788999999994 444666666777741 125677777665
Q ss_pred CCCCCCCCCcccccccccEEEecCCChhHHHHHHHHHHHh
Q psy568 543 PTDPGRKPLSHRFLRHVPVIYVDYPGETSLKQIYGTFSRA 582 (1614)
Q Consensus 543 ~~~~g~~~l~~r~~r~f~~i~i~~p~~~~l~~I~~~~~~~ 582 (1614)
+. .|.+-+++|+.++.+..++.+++...+..++..
T Consensus 159 ~~-----kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~ 193 (944)
T PRK14949 159 PQ-----KLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQ 193 (944)
T ss_pred ch-----hchHHHHHhheEEeCCCCCHHHHHHHHHHHHHH
Confidence 53 478889999999999999999999887776543
No 141
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.28 E-value=5.5e-06 Score=100.38 Aligned_cols=140 Identities=16% Similarity=0.213 Sum_probs=88.1
Q ss_pred HHHHHhcC---CCEEEecCCCCchHHHHHHHHhcCCCC-----------------------ceEEEEcccCCCHHHHHhH
Q psy568 409 LYTWLAEH---KPLVLCGPPGSGKTMTLLSALRALPDM-----------------------EVVSLNFSSATTPELLLKT 462 (1614)
Q Consensus 409 l~~~l~~~---~~vLL~Gp~GtGKT~lv~~~~~~l~~~-----------------------~~~~i~~s~~t~~~~l~~~ 462 (1614)
+..++..| +.+||+||+|+|||++++.+++.+... .+..++.++....+++...
T Consensus 28 l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~~~~~~~~~~v~~ir~i 107 (363)
T PRK14961 28 ISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLIEIDAASRTKVEEMREI 107 (363)
T ss_pred HHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceEEecccccCCHHHHHHH
Confidence 44555554 346999999999999999999876311 1222333333444555444
Q ss_pred hhcccceeecCCccccccccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecC
Q psy568 463 FDHYCEYRKTPNGVILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNP 542 (1614)
Q Consensus 463 ~~~~~~~~~~~~g~~~~p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~ 542 (1614)
++. + ...|. .|++-|++|||+++.. ....+.|...++.. . +.+.||.+++.
T Consensus 108 ~~~-~---------~~~p~-~~~~kviIIDEa~~l~------~~a~naLLk~lEe~-----~-------~~~~fIl~t~~ 158 (363)
T PRK14961 108 LDN-I---------YYSPS-KSRFKVYLIDEVHMLS------RHSFNALLKTLEEP-----P-------QHIKFILATTD 158 (363)
T ss_pred HHH-H---------hcCcc-cCCceEEEEEChhhcC------HHHHHHHHHHHhcC-----C-------CCeEEEEEcCC
Confidence 331 1 12232 3556788899999843 23344444555531 1 24566666654
Q ss_pred CCCCCCCCCcccccccccEEEecCCChhHHHHHHHHHHHh
Q psy568 543 PTDPGRKPLSHRFLRHVPVIYVDYPGETSLKQIYGTFSRA 582 (1614)
Q Consensus 543 ~~~~g~~~l~~r~~r~f~~i~i~~p~~~~l~~I~~~~~~~ 582 (1614)
+. .+++++.+|+..+.++.|+.+++..+...++..
T Consensus 159 ~~-----~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~ 193 (363)
T PRK14961 159 VE-----KIPKTILSRCLQFKLKIISEEKIFNFLKYILIK 193 (363)
T ss_pred hH-----hhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHH
Confidence 32 588899999999999999999999887765543
No 142
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.28 E-value=2e-06 Score=109.72 Aligned_cols=150 Identities=18% Similarity=0.204 Sum_probs=99.2
Q ss_pred CCEEEecCCCCchHHHHHHHHhcCCC-CceEEEEcccCCCHHHHHhHhhcc--c--ceeecCCccccccccCCceEEEEe
Q psy568 417 KPLVLCGPPGSGKTMTLLSALRALPD-MEVVSLNFSSATTPELLLKTFDHY--C--EYRKTPNGVILSPIQLGKWLVLFC 491 (1614)
Q Consensus 417 ~~vLL~Gp~GtGKT~lv~~~~~~l~~-~~~~~i~~s~~t~~~~l~~~~~~~--~--~~~~~~~g~~~~p~~~gk~~vlfi 491 (1614)
.||||.|++|||||++++.+.+.++. .+++.++++ .+...+.+.++-. + .......|.+..+ ...++|+
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~--~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A----~~GvL~l 90 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLG--VTEDRLIGGIDVEESLAGGQRVTQPGLLDEA----PRGVLYV 90 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcc--cchhhcccchhhhhhhhcCcccCCCCCeeeC----CCCcEec
Confidence 48999999999999999988887654 357777753 4445555543211 0 0111223554433 2357889
Q ss_pred ccCCCCCccccCcccHHHHHHHHHHcCceeeC-CCCceEeecCeEEEEeecCCCCCCCCCCcccccccccE-EEecC-CC
Q psy568 492 DEINLPDMDKYATQRVISFLRQLIEQRGFYRP-ADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLRHVPV-IYVDY-PG 568 (1614)
Q Consensus 492 Ddin~p~~d~~g~q~~lelLrqlld~~~~~~~-~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r~f~~-i~i~~-p~ 568 (1614)
||+|. -+..+...|.+.++.|.+... .+.......++.+|||+||... ...+++.|+.||.+ +.+.+ |+
T Consensus 91 DEi~r------l~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~--~g~L~~~LldRf~l~v~~~~~~~ 162 (589)
T TIGR02031 91 DMANL------LDDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEG--GGGLPDHLLDRLALHVSLEDVAS 162 (589)
T ss_pred cchhh------CCHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccc--cCCCCHHHHHhccCeeecCCCCC
Confidence 99999 555588889999998876443 3334444458999999999752 23799999999985 34444 45
Q ss_pred hhHHHHHHHHHH
Q psy568 569 ETSLKQIYGTFS 580 (1614)
Q Consensus 569 ~~~l~~I~~~~~ 580 (1614)
.++...|....+
T Consensus 163 ~~er~eil~~~~ 174 (589)
T TIGR02031 163 QDLRVEIVRRER 174 (589)
T ss_pred HHHHHHHHHHHH
Confidence 555566665544
No 143
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=98.27 E-value=2.2e-06 Score=100.81 Aligned_cols=83 Identities=18% Similarity=0.185 Sum_probs=59.0
Q ss_pred eEEEEeccCCCCCccccCcccHHHHHHHHHHcCc-eeeCCCCceEeecCeEEEEeecCCCCCCCCCCccccccccc-EEE
Q psy568 486 WLVLFCDEINLPDMDKYATQRVISFLRQLIEQRG-FYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLRHVP-VIY 563 (1614)
Q Consensus 486 ~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~-~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r~f~-~i~ 563 (1614)
..++|+||+|+ -+..+...|...++.|. -+.+.+.......++.+|+|+||.. | .+++.++.||. .+.
T Consensus 145 ~GiL~lDEInr------L~~~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~e--g--~l~~~LldRf~l~i~ 214 (350)
T CHL00081 145 RGILYVDEVNL------LDDHLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEE--G--ELRPQLLDRFGMHAE 214 (350)
T ss_pred CCEEEecChHh------CCHHHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCccc--C--CCCHHHHHHhCceee
Confidence 46889999999 44446677777887754 2333333333445899999999875 2 49999999999 578
Q ss_pred ecCCCh-hHHHHHHHH
Q psy568 564 VDYPGE-TSLKQIYGT 578 (1614)
Q Consensus 564 i~~p~~-~~l~~I~~~ 578 (1614)
+.+|+. +....|...
T Consensus 215 l~~~~~~~~e~~il~~ 230 (350)
T CHL00081 215 IRTVKDPELRVKIVEQ 230 (350)
T ss_pred cCCCCChHHHHHHHHh
Confidence 899974 777777544
No 144
>KOG0250|consensus
Probab=98.26 E-value=0.05 Score=70.70 Aligned_cols=70 Identities=19% Similarity=0.322 Sum_probs=42.6
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q psy568 1230 SYADMLKKVEPLRLELKSLEVQASENKAKG-EETKDLITQLEKSIASYKDEYAQLIAQATAIKTDLDNVQA 1299 (1614)
Q Consensus 1230 ~y~~v~~~v~P~~~~l~~~~~~~~~~~~~l-~~~~~~l~~~e~~l~~l~~~~~~~~~~~~~l~~~l~~~~~ 1299 (1614)
+|......++-++.++..+++.+..++++. +.+...+.+.+.++..|+.+.+++..+...|..+++.+..
T Consensus 359 ~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~ 429 (1074)
T KOG0250|consen 359 EIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKE 429 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555666666666666666666666666 5566666666666666666666666555555555444443
No 145
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.26 E-value=4.3e-06 Score=100.11 Aligned_cols=157 Identities=18% Similarity=0.270 Sum_probs=109.2
Q ss_pred HHHHHHHHHHhccEEEEecCCCCChhhHHHHHHHHHHHhhcCCceEEEeCCCCCCcCcccccccCC--CCccccchHHHH
Q psy568 32 KVLQLYQISNLNHGLMMVGPSGSGKSTAWKVLLKALERYEGVEGVAHIIDPKAISKEALYGVLDPN--TREWTDGLFTHI 109 (1614)
Q Consensus 32 K~~qL~e~~~~r~gVmlvG~~gsGKTt~~~~L~~al~~~~~~~~~~~~inPkais~~eLyG~~d~~--t~eW~DGvls~i 109 (1614)
.+-++...+..++.+++.||||+|||++.+.|+..+..-.....+..+-..-..+..++.|.+-|. .-.|.+|+|..+
T Consensus 183 ~le~l~~~L~~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vgy~~~~G~f~~~ 262 (459)
T PRK11331 183 TIETILKRLTIKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFYNF 262 (459)
T ss_pred HHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCCCeEecCchHHHH
Confidence 344566777789999999999999999999999887421111112222233445666666555443 347899999998
Q ss_pred HHHHHhhhcCCCCCceEEEEc----cCCChhhhhhhhhhhcCCC-----ccccC----CCceeeCCCCceEEEEeccc--
Q psy568 110 LRRIIDNVRGEISKRQWIIFD----GDVDPEWVENLNSVLDDNK-----LLTLP----NGERLSLPPNIRIMFEVQDL-- 174 (1614)
Q Consensus 110 ~r~~~~~~~~~~~~~~WivfD----G~vd~~WiE~lnsvLDdnk-----~L~L~----nGeri~l~~~~~~iFEv~dL-- 174 (1614)
.+++..+ .....|+|+| |+++..+=|.+ ++||..+ .+.|+ +++++.+|+|+++|--+.+-
T Consensus 263 ~~~A~~~----p~~~~vliIDEINRani~kiFGel~-~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Dr 337 (459)
T PRK11331 263 CQQAKEQ----PEKKYVFIIDEINRANLSKVFGEVM-MLMEHDKRGENWSVPLTYSENDEERFYVPENVYIIGLMNTADR 337 (459)
T ss_pred HHHHHhc----ccCCcEEEEehhhccCHHHhhhhhh-hhccccccccccceeeeccccccccccCCCCeEEEEecCcccc
Confidence 8886432 2346999999 77777777764 4665332 23332 36789999999999877443
Q ss_pred --cccCccccccceeEEecCc
Q psy568 175 --KYATLATVSRCGMIWFSED 193 (1614)
Q Consensus 175 --~~ASPAtVSRcgmv~~~~~ 193 (1614)
....+|.-=|+.+|.+.|+
T Consensus 338 s~~~lD~AlrRRF~fi~i~p~ 358 (459)
T PRK11331 338 SLAVVDYALRRRFSFIDIEPG 358 (459)
T ss_pred chhhccHHHHhhhheEEecCC
Confidence 3678999999999999885
No 146
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.26 E-value=5.9e-06 Score=101.57 Aligned_cols=140 Identities=16% Similarity=0.218 Sum_probs=97.6
Q ss_pred HHHHHHhcC---CCEEEecCCCCchHHHHHHHHhcCC-----------------------CCceEEEEcccCCCHHHHHh
Q psy568 408 LLYTWLAEH---KPLVLCGPPGSGKTMTLLSALRALP-----------------------DMEVVSLNFSSATTPELLLK 461 (1614)
Q Consensus 408 ll~~~l~~~---~~vLL~Gp~GtGKT~lv~~~~~~l~-----------------------~~~~~~i~~s~~t~~~~l~~ 461 (1614)
.+..++..| ++.||+||+|+|||++++-+++.+. ...++.++-++.++.+++..
T Consensus 24 ~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eidaas~~~vddIR~ 103 (491)
T PRK14964 24 ILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEIDAASNTSVDDIKV 103 (491)
T ss_pred HHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEecccCCCHHHHHH
Confidence 444555554 5699999999999999988876431 12356677777778788776
Q ss_pred HhhcccceeecCCccccccccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeec
Q psy568 462 TFDHYCEYRKTPNGVILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACN 541 (1614)
Q Consensus 462 ~~~~~~~~~~~~~g~~~~p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n 541 (1614)
.++.. .+.|. .+++-|++|||+|+- +....+.|...++.- .+.+.||.+++
T Consensus 104 Iie~~----------~~~P~-~~~~KVvIIDEah~L------s~~A~NaLLK~LEeP------------p~~v~fIlatt 154 (491)
T PRK14964 104 ILENS----------CYLPI-SSKFKVYIIDEVHML------SNSAFNALLKTLEEP------------APHVKFILATT 154 (491)
T ss_pred HHHHH----------Hhccc-cCCceEEEEeChHhC------CHHHHHHHHHHHhCC------------CCCeEEEEEeC
Confidence 66431 13343 355667888999994 334556666666641 13466777665
Q ss_pred CCCCCCCCCCcccccccccEEEecCCChhHHHHHHHHHHH
Q psy568 542 PPTDPGRKPLSHRFLRHVPVIYVDYPGETSLKQIYGTFSR 581 (1614)
Q Consensus 542 ~~~~~g~~~l~~r~~r~f~~i~i~~p~~~~l~~I~~~~~~ 581 (1614)
.+ ..+++.+.+|+..+.+..++.+++...+..++.
T Consensus 155 e~-----~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~ 189 (491)
T PRK14964 155 EV-----KKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAK 189 (491)
T ss_pred Ch-----HHHHHHHHHhheeeecccccHHHHHHHHHHHHH
Confidence 43 258889999999999999999999888777655
No 147
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.25 E-value=7.7e-06 Score=89.71 Aligned_cols=136 Identities=15% Similarity=0.237 Sum_probs=87.7
Q ss_pred CCCEEEecCCCCchHHHHHHHHhcCCC--CceEEEEcccCCCHHHHHhHhhcccceeecCCccccccccCCceEEEEecc
Q psy568 416 HKPLVLCGPPGSGKTMTLLSALRALPD--MEVVSLNFSSATTPELLLKTFDHYCEYRKTPNGVILSPIQLGKWLVLFCDE 493 (1614)
Q Consensus 416 ~~~vLL~Gp~GtGKT~lv~~~~~~l~~--~~~~~i~~s~~t~~~~l~~~~~~~~~~~~~~~g~~~~p~~~gk~~vlfiDd 493 (1614)
..||||.|+.|||||++|+.++....+ ..++.+.=..-.+...+...+.. ...+.|||+||
T Consensus 52 annvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~~l~~l~~~l~~-----------------~~~kFIlf~DD 114 (249)
T PF05673_consen 52 ANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLGDLPELLDLLRD-----------------RPYKFILFCDD 114 (249)
T ss_pred CcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhccHHHHHHHHhc-----------------CCCCEEEEecC
Confidence 478999999999999999999987644 34444433333343444443321 23469999999
Q ss_pred CCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCC----C---C-CC--CCCCc--------ccc
Q psy568 494 INLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPP----T---D-PG--RKPLS--------HRF 555 (1614)
Q Consensus 494 in~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~----~---~-~g--~~~l~--------~r~ 555 (1614)
+.....|. -...|+.++|.+- -.+ ..|+.+.||+|.- . + .+ ..++- -.|
T Consensus 115 LsFe~~d~-----~yk~LKs~LeGgl-e~~-------P~NvliyATSNRRHLv~E~~~d~~~~~~~eih~~d~~eEklSL 181 (249)
T PF05673_consen 115 LSFEEGDT-----EYKALKSVLEGGL-EAR-------PDNVLIYATSNRRHLVPESFSDREDIQDDEIHPSDTIEEKLSL 181 (249)
T ss_pred CCCCCCcH-----HHHHHHHHhcCcc-ccC-------CCcEEEEEecchhhccchhhhhccCCCccccCcchHHHHHHhH
Confidence 99865553 4578899998543 221 2479999999851 0 0 00 00111 134
Q ss_pred ccccc-EEEecCCChhHHHHHHHHHHH
Q psy568 556 LRHVP-VIYVDYPGETSLKQIYGTFSR 581 (1614)
Q Consensus 556 ~r~f~-~i~i~~p~~~~l~~I~~~~~~ 581 (1614)
..||- .|.+..|+.++...|...++.
T Consensus 182 sDRFGL~l~F~~~~q~~YL~IV~~~~~ 208 (249)
T PF05673_consen 182 SDRFGLWLSFYPPDQEEYLAIVRHYAE 208 (249)
T ss_pred HHhCCcEEEecCCCHHHHHHHHHHHHH
Confidence 45676 678888999888888777664
No 148
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.25 E-value=4.9e-06 Score=101.86 Aligned_cols=163 Identities=20% Similarity=0.205 Sum_probs=97.2
Q ss_pred HHHHHHHHHhc--CCCEEEecCCCCchHHHHHHHHhcCC----C----CceEEEEcccCCCHHHHHhHhhcccc---eee
Q psy568 405 HESLLYTWLAE--HKPLVLCGPPGSGKTMTLLSALRALP----D----MEVVSLNFSSATTPELLLKTFDHYCE---YRK 471 (1614)
Q Consensus 405 ~~~ll~~~l~~--~~~vLL~Gp~GtGKT~lv~~~~~~l~----~----~~~~~i~~s~~t~~~~l~~~~~~~~~---~~~ 471 (1614)
....+...+.. +.+++++||||||||++++.+++.+. + ..++.++|....++..+...+-..+. ...
T Consensus 27 l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~ 106 (365)
T TIGR02928 27 LAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVELANQLRGSGEEV 106 (365)
T ss_pred HHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHHHHHHHhhcCCCC
Confidence 33444444443 35799999999999999999987542 1 35678888877666555544433221 000
Q ss_pred cCCcc--------cccc-ccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecC
Q psy568 472 TPNGV--------ILSP-IQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNP 542 (1614)
Q Consensus 472 ~~~g~--------~~~p-~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~ 542 (1614)
...|. +... ...++..|++|||++..... .+.+ |-+++. ++.... ....++.+|+++|.
T Consensus 107 ~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~---~~~~---L~~l~~---~~~~~~---~~~~~v~lI~i~n~ 174 (365)
T TIGR02928 107 PTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGD---DDDL---LYQLSR---ARSNGD---LDNAKVGVIGISND 174 (365)
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccC---CcHH---HHhHhc---cccccC---CCCCeEEEEEEECC
Confidence 00010 0000 01356789999999985411 1222 333322 111000 01135788888887
Q ss_pred CCCCCCCCCccccccccc--EEEecCCChhHHHHHHHHHHH
Q psy568 543 PTDPGRKPLSHRFLRHVP--VIYVDYPGETSLKQIYGTFSR 581 (1614)
Q Consensus 543 ~~~~g~~~l~~r~~r~f~--~i~i~~p~~~~l~~I~~~~~~ 581 (1614)
+. -...+.++..++|. .+.+++++.+++..|+...+.
T Consensus 175 ~~--~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~ 213 (365)
T TIGR02928 175 LK--FRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAE 213 (365)
T ss_pred cc--hHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHH
Confidence 64 22357888888884 789999999999999887665
No 149
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.25 E-value=6.5e-06 Score=104.15 Aligned_cols=140 Identities=18% Similarity=0.223 Sum_probs=92.4
Q ss_pred HHHHHHhcCC---CEEEecCCCCchHHHHHHHHhcCCCC-----------------------ceEEEEcccCCCHHHHHh
Q psy568 408 LLYTWLAEHK---PLVLCGPPGSGKTMTLLSALRALPDM-----------------------EVVSLNFSSATTPELLLK 461 (1614)
Q Consensus 408 ll~~~l~~~~---~vLL~Gp~GtGKT~lv~~~~~~l~~~-----------------------~~~~i~~s~~t~~~~l~~ 461 (1614)
.+..++..|+ ..||+||+|+|||++++.+++.+... .++.++-++.+..+++..
T Consensus 27 ~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D~ieidaas~~~VddiR~ 106 (647)
T PRK07994 27 ALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVDLIEIDAASRTKVEDTRE 106 (647)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCCceeecccccCCHHHHHH
Confidence 4555666553 26999999999999999888876321 123344333455555554
Q ss_pred HhhcccceeecCCccccccccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeec
Q psy568 462 TFDHYCEYRKTPNGVILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACN 541 (1614)
Q Consensus 462 ~~~~~~~~~~~~~g~~~~p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n 541 (1614)
.++. . .+.|. .|++-|++|||+|+-.. .....|.-.++.- .+.+.||.+++
T Consensus 107 li~~-~---------~~~p~-~g~~KV~IIDEah~Ls~------~a~NALLKtLEEP------------p~~v~FIL~Tt 157 (647)
T PRK07994 107 LLDN-V---------QYAPA-RGRFKVYLIDEVHMLSR------HSFNALLKTLEEP------------PEHVKFLLATT 157 (647)
T ss_pred HHHH-H---------Hhhhh-cCCCEEEEEechHhCCH------HHHHHHHHHHHcC------------CCCeEEEEecC
Confidence 4431 1 23343 46777899999999433 3444555566641 12566777776
Q ss_pred CCCCCCCCCCcccccccccEEEecCCChhHHHHHHHHHHH
Q psy568 542 PPTDPGRKPLSHRFLRHVPVIYVDYPGETSLKQIYGTFSR 581 (1614)
Q Consensus 542 ~~~~~g~~~l~~r~~r~f~~i~i~~p~~~~l~~I~~~~~~ 581 (1614)
.+. .|++-+++|+..+.+..++.+++...+..++.
T Consensus 158 ~~~-----kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~ 192 (647)
T PRK07994 158 DPQ-----KLPVTILSRCLQFHLKALDVEQIRQQLEHILQ 192 (647)
T ss_pred Ccc-----ccchHHHhhheEeeCCCCCHHHHHHHHHHHHH
Confidence 553 58888999999999999999998888766553
No 150
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=98.24 E-value=3.1e-06 Score=99.82 Aligned_cols=149 Identities=17% Similarity=0.224 Sum_probs=89.9
Q ss_pred CCCEEEecCCCCchHHHHHHHHhcCCCCc-eEE------------------------------------EEcccCCCHHH
Q psy568 416 HKPLVLCGPPGSGKTMTLLSALRALPDME-VVS------------------------------------LNFSSATTPEL 458 (1614)
Q Consensus 416 ~~~vLL~Gp~GtGKT~lv~~~~~~l~~~~-~~~------------------------------------i~~s~~t~~~~ 458 (1614)
..+|+|.|++|+|||++++.+...++... .+. .+....++.+.
T Consensus 25 ~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~ 104 (337)
T TIGR02030 25 IGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEMMCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDR 104 (337)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccccChHHhhhhhcccccccccCCCCcCCCCCCCcccc
Confidence 57899999999999999998886653100 000 01111122223
Q ss_pred HHhHhhc--cc--ceeecCCccccccccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCce-eeCCCCceEeecC
Q psy568 459 LLKTFDH--YC--EYRKTPNGVILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGF-YRPADKQWVSLER 533 (1614)
Q Consensus 459 l~~~~~~--~~--~~~~~~~g~~~~p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~-~~~~~~~~~~~~~ 533 (1614)
+.|.++- .+ .......|.+..+ ...++|+||+|. -+......|.+.++.|.. +.+.+.......+
T Consensus 105 l~G~~d~~~~l~~g~~~~~~GlL~~A----~~GvL~lDEi~~------L~~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r 174 (337)
T TIGR02030 105 VCGTLDIERALTEGVKAFEPGLLARA----NRGILYIDEVNL------LEDHLVDVLLDVAASGWNVVEREGISIRHPAR 174 (337)
T ss_pred eecchhHhhHhhcCCEEeecCcceec----cCCEEEecChHh------CCHHHHHHHHHHHHhCCeEEEECCEEEEcCCC
Confidence 4444321 00 1111123543322 236788999999 444577777788887752 3222333333357
Q ss_pred eEEEEeecCCCCCCCCCCccccccccc-EEEecCCCh-hHHHHHHHH
Q psy568 534 IQCVGACNPPTDPGRKPLSHRFLRHVP-VIYVDYPGE-TSLKQIYGT 578 (1614)
Q Consensus 534 ~~~iaa~n~~~~~g~~~l~~r~~r~f~-~i~i~~p~~-~~l~~I~~~ 578 (1614)
+.+++|+||.. ..+++.++.||. .+.+++|+. ++...|...
T Consensus 175 ~iviat~np~e----g~l~~~LldRf~l~i~l~~p~~~eer~eIL~~ 217 (337)
T TIGR02030 175 FVLVGSGNPEE----GELRPQLLDRFGLHAEIRTVRDVELRVEIVER 217 (337)
T ss_pred EEEEecccccc----CCCCHHHHhhcceEEECCCCCCHHHHHHHHHh
Confidence 99999999874 259999999999 468888876 565666543
No 151
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.24 E-value=8.1e-06 Score=103.39 Aligned_cols=221 Identities=12% Similarity=0.113 Sum_probs=124.0
Q ss_pred CCcceeeeCcchhhHHHHHHHHHhcCCCEEEecCCCCchHHHHHHHHhcC--CCCceEEEEcccCCCHHHHHhHhhcccc
Q psy568 391 AASDVVVPTLDTVRHESLLYTWLAEHKPLVLCGPPGSGKTMTLLSALRAL--PDMEVVSLNFSSATTPELLLKTFDHYCE 468 (1614)
Q Consensus 391 ~~~~~~vpT~~t~r~~~ll~~~l~~~~~vLL~Gp~GtGKT~lv~~~~~~l--~~~~~~~i~~s~~t~~~~l~~~~~~~~~ 468 (1614)
.+.+++-..+.+.+....+..+...+.||||.|++||||+.+++.+-... .+.+++.+||+.... +.+...+-+...
T Consensus 202 ~f~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~-~~~e~elFG~~~ 280 (520)
T PRK10820 202 AFSQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPD-DVVESELFGHAP 280 (520)
T ss_pred cccceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCH-HHHHHHhcCCCC
Confidence 34445555556667777788888899999999999999999988765433 346789999987553 333222211110
Q ss_pred -----eeecCCccccccccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCC
Q psy568 469 -----YRKTPNGVILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPP 543 (1614)
Q Consensus 469 -----~~~~~~g~~~~p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~ 543 (1614)
......|.+-.+ ....+|||||+.- +.....-|.+++..+.|... +.......++++|+|++.+
T Consensus 281 ~~~~~~~~~~~g~~e~a----~~GtL~LdeI~~L------~~~~Q~~Ll~~l~~~~~~~~-g~~~~~~~~vRiI~st~~~ 349 (520)
T PRK10820 281 GAYPNALEGKKGFFEQA----NGGSVLLDEIGEM------SPRMQAKLLRFLNDGTFRRV-GEDHEVHVDVRVICATQKN 349 (520)
T ss_pred CCcCCcccCCCChhhhc----CCCEEEEeChhhC------CHHHHHHHHHHHhcCCcccC-CCCcceeeeeEEEEecCCC
Confidence 000112322222 2256788999973 33355666677777665432 2222233578999988764
Q ss_pred CC--CCCCCCcccccccccEEEecCCChh----HHHHHHHHHHHhhhhcch-hhhhhHHHHHHHHHHHHHHHHhhcCCCC
Q psy568 544 TD--PGRKPLSHRFLRHVPVIYVDYPGET----SLKQIYGTFSRAMLRLIP-PLRGYADALTNAMVELYLASQEKFTQDM 616 (1614)
Q Consensus 544 ~~--~g~~~l~~r~~r~f~~i~i~~p~~~----~l~~I~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 616 (1614)
-. .....+.+.|..+++++.+.-|.-. ++..+...++..+..... .... +....++.. .
T Consensus 350 l~~l~~~g~f~~dL~~rL~~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~----ls~~a~~~L---~------- 415 (520)
T PRK10820 350 LVELVQKGEFREDLYYRLNVLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPK----LAADLNTVL---T------- 415 (520)
T ss_pred HHHHHHcCCccHHHHhhcCeeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCC----cCHHHHHHH---h-------
Confidence 20 1122455667778776666655543 344444444443221100 0011 111111111 0
Q ss_pred CCccccChhhHHHHhhhhhcc
Q psy568 617 QPHYVYSPREMTRWVRGICEA 637 (1614)
Q Consensus 617 ~~hY~F~lRdl~~v~~~i~~~ 637 (1614)
.-+|.-|+|+|.+++...+..
T Consensus 416 ~y~WPGNvreL~nvl~~a~~~ 436 (520)
T PRK10820 416 RYGWPGNVRQLKNAIYRALTQ 436 (520)
T ss_pred cCCCCCHHHHHHHHHHHHHHh
Confidence 114677999999999887653
No 152
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.23 E-value=2.1e-05 Score=99.56 Aligned_cols=140 Identities=15% Similarity=0.217 Sum_probs=91.1
Q ss_pred HHHHHHhcC---CCEEEecCCCCchHHHHHHHHhcCCCC----------------------------ceEEEEcccCCCH
Q psy568 408 LLYTWLAEH---KPLVLCGPPGSGKTMTLLSALRALPDM----------------------------EVVSLNFSSATTP 456 (1614)
Q Consensus 408 ll~~~l~~~---~~vLL~Gp~GtGKT~lv~~~~~~l~~~----------------------------~~~~i~~s~~t~~ 456 (1614)
.|..++..+ +.+||+||+|+|||++++.+++.+... .++.++-++.+..
T Consensus 27 ~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~~g~h~D~~eldaas~~~V 106 (618)
T PRK14951 27 ALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDIDSGRFVDYTELDAASNRGV 106 (618)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHHcCCCCceeecCcccccCH
Confidence 455566554 346999999999999999888765210 1334444444555
Q ss_pred HHHHhHhhcccceeecCCccccccccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEE
Q psy568 457 ELLLKTFDHYCEYRKTPNGVILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQC 536 (1614)
Q Consensus 457 ~~l~~~~~~~~~~~~~~~g~~~~p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~ 536 (1614)
+++...++. ..+.|. .|++-|++|||+|+-..+ ....|+..++.. ...+.|
T Consensus 107 d~iReli~~----------~~~~p~-~g~~KV~IIDEvh~Ls~~------a~NaLLKtLEEP------------P~~~~f 157 (618)
T PRK14951 107 DEVQQLLEQ----------AVYKPV-QGRFKVFMIDEVHMLTNT------AFNAMLKTLEEP------------PEYLKF 157 (618)
T ss_pred HHHHHHHHH----------HHhCcc-cCCceEEEEEChhhCCHH------HHHHHHHhcccC------------CCCeEE
Confidence 566555532 123443 366778889999994443 344455554431 124566
Q ss_pred EEeecCCCCCCCCCCcccccccccEEEecCCChhHHHHHHHHHHH
Q psy568 537 VGACNPPTDPGRKPLSHRFLRHVPVIYVDYPGETSLKQIYGTFSR 581 (1614)
Q Consensus 537 iaa~n~~~~~g~~~l~~r~~r~f~~i~i~~p~~~~l~~I~~~~~~ 581 (1614)
|.+++.+. .+.+.+++|+..+.+..++.+++...+..++.
T Consensus 158 IL~Ttd~~-----kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~ 197 (618)
T PRK14951 158 VLATTDPQ-----KVPVTVLSRCLQFNLRPMAPETVLEHLTQVLA 197 (618)
T ss_pred EEEECCch-----hhhHHHHHhceeeecCCCCHHHHHHHHHHHHH
Confidence 66665443 36667999999999999999998888776654
No 153
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.22 E-value=1.6e-05 Score=88.94 Aligned_cols=161 Identities=19% Similarity=0.236 Sum_probs=83.5
Q ss_pred ceeeeCcchhhHHHHHHHHHhc-C---CCEEEecCCCCchHHHHHHHHhcC----CCCceEEEEcccCCCHHHHHhHhhc
Q psy568 394 DVVVPTLDTVRHESLLYTWLAE-H---KPLVLCGPPGSGKTMTLLSALRAL----PDMEVVSLNFSSATTPELLLKTFDH 465 (1614)
Q Consensus 394 ~~~vpT~~t~r~~~ll~~~l~~-~---~~vLL~Gp~GtGKT~lv~~~~~~l----~~~~~~~i~~s~~t~~~~l~~~~~~ 465 (1614)
+.||+.............+... + .|++|+||+|+|||.++..+.... ++..++.++....+. .+...+..
T Consensus 8 dnfv~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~--~~~~~~~~ 85 (219)
T PF00308_consen 8 DNFVVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIR--EFADALRD 85 (219)
T ss_dssp CCS--TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHH--HHHHHHHT
T ss_pred ccCCcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHH--HHHHHHHc
Confidence 4566665555555555555543 2 379999999999999998887643 345566665432111 11111110
Q ss_pred -ccc-eeecCCccccccccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCC
Q psy568 466 -YCE-YRKTPNGVILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPP 543 (1614)
Q Consensus 466 -~~~-~~~~~~g~~~~p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~ 543 (1614)
..+ .+. + +. + .=+++|||++.-..........+.++..+.++|+ -.++++-.+|
T Consensus 86 ~~~~~~~~---~--~~----~-~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k--------------~li~ts~~~P 141 (219)
T PF00308_consen 86 GEIEEFKD---R--LR----S-ADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGK--------------QLILTSDRPP 141 (219)
T ss_dssp TSHHHHHH---H--HC----T-SSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTS--------------EEEEEESS-T
T ss_pred ccchhhhh---h--hh----c-CCEEEEecchhhcCchHHHHHHHHHHHHHHhhCC--------------eEEEEeCCCC
Confidence 000 000 0 11 1 1245669999854332111234455555555432 2233443444
Q ss_pred CCCCCCCCccccccccc---EEEecCCChhHHHHHHHHHHHh
Q psy568 544 TDPGRKPLSHRFLRHVP---VIYVDYPGETSLKQIYGTFSRA 582 (1614)
Q Consensus 544 ~~~g~~~l~~r~~r~f~---~i~i~~p~~~~l~~I~~~~~~~ 582 (1614)
. .-..+.+++.+||. ++.+..|+.++...|+......
T Consensus 142 ~--~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~ 181 (219)
T PF00308_consen 142 S--ELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKE 181 (219)
T ss_dssp T--TTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHH
T ss_pred c--cccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHH
Confidence 3 23357888888877 7899999999999998776553
No 154
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.22 E-value=9.6e-06 Score=98.19 Aligned_cols=148 Identities=18% Similarity=0.278 Sum_probs=88.3
Q ss_pred HHHHHHHHHhcCC--CEEEecCCCCchHHHHHHHHhcCCC----CceEEEEcccCCCH--HHH-----------------
Q psy568 405 HESLLYTWLAEHK--PLVLCGPPGSGKTMTLLSALRALPD----MEVVSLNFSSATTP--ELL----------------- 459 (1614)
Q Consensus 405 ~~~ll~~~l~~~~--~vLL~Gp~GtGKT~lv~~~~~~l~~----~~~~~i~~s~~t~~--~~l----------------- 459 (1614)
....+..++..+. +++|+||||||||++++.+++.+.+ ..++.++++..... ..+
T Consensus 23 ~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (337)
T PRK12402 23 VVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQGKKYLVEDPRFAHFLGTDKRIR 102 (337)
T ss_pred HHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhcchhhhhcCcchhhhhhhhhhhc
Confidence 3444566777777 8999999999999999998887643 23566666532110 000
Q ss_pred ---HhHhhcccceeecCCccccccccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEE
Q psy568 460 ---LKTFDHYCEYRKTPNGVILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQC 536 (1614)
Q Consensus 460 ---~~~~~~~~~~~~~~~g~~~~p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~ 536 (1614)
...+....... .-+.|.. +..-+++|||++.... ...+.|+.+++... .+..|
T Consensus 103 ~~~~~~~~~~~~~~-----~~~~~~~-~~~~vlilDe~~~l~~------~~~~~L~~~le~~~------------~~~~~ 158 (337)
T PRK12402 103 SSKIDNFKHVLKEY-----ASYRPLS-ADYKTILLDNAEALRE------DAQQALRRIMEQYS------------RTCRF 158 (337)
T ss_pred cchHHHHHHHHHHH-----HhcCCCC-CCCcEEEEeCcccCCH------HHHHHHHHHHHhcc------------CCCeE
Confidence 00000000000 0012221 2335788899987432 23456677776421 12445
Q ss_pred EEeecCCCCCCCCCCcccccccccEEEecCCChhHHHHHHHHHHH
Q psy568 537 VGACNPPTDPGRKPLSHRFLRHVPVIYVDYPGETSLKQIYGTFSR 581 (1614)
Q Consensus 537 iaa~n~~~~~g~~~l~~r~~r~f~~i~i~~p~~~~l~~I~~~~~~ 581 (1614)
|.+++.+. .+.+.+.+|+..+.+..|+.+++..++..++.
T Consensus 159 Il~~~~~~-----~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~ 198 (337)
T PRK12402 159 IIATRQPS-----KLIPPIRSRCLPLFFRAPTDDELVDVLESIAE 198 (337)
T ss_pred EEEeCChh-----hCchhhcCCceEEEecCCCHHHHHHHHHHHHH
Confidence 66655332 45667888999999999999999888777654
No 155
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.22 E-value=9.9e-06 Score=101.11 Aligned_cols=140 Identities=17% Similarity=0.234 Sum_probs=91.6
Q ss_pred HHHHHhcCC---CEEEecCCCCchHHHHHHHHhcCCC-----------------------CceEEEEcccCCCHHHHHhH
Q psy568 409 LYTWLAEHK---PLVLCGPPGSGKTMTLLSALRALPD-----------------------MEVVSLNFSSATTPELLLKT 462 (1614)
Q Consensus 409 l~~~l~~~~---~vLL~Gp~GtGKT~lv~~~~~~l~~-----------------------~~~~~i~~s~~t~~~~l~~~ 462 (1614)
+..++..++ .+||+||+|+|||++++.+++.+.. ..++.++..+.+..+.+...
T Consensus 28 L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieidaas~~gvd~ir~i 107 (546)
T PRK14957 28 LVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDAASRTGVEETKEI 107 (546)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEeecccccCHHHHHHH
Confidence 445555543 3789999999999999999886632 12333444444555555444
Q ss_pred hhcccceeecCCccccccccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecC
Q psy568 463 FDHYCEYRKTPNGVILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNP 542 (1614)
Q Consensus 463 ~~~~~~~~~~~~g~~~~p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~ 542 (1614)
++. +. +.|. .|++-|++|||+++ -+....+.|+..++... ..+.||.+++.
T Consensus 108 i~~-~~---------~~p~-~g~~kViIIDEa~~------ls~~a~naLLK~LEepp------------~~v~fIL~Ttd 158 (546)
T PRK14957 108 LDN-IQ---------YMPS-QGRYKVYLIDEVHM------LSKQSFNALLKTLEEPP------------EYVKFILATTD 158 (546)
T ss_pred HHH-HH---------hhhh-cCCcEEEEEechhh------ccHHHHHHHHHHHhcCC------------CCceEEEEECC
Confidence 432 11 1232 35567888999998 34446667777777521 24566666654
Q ss_pred CCCCCCCCCcccccccccEEEecCCChhHHHHHHHHHHHh
Q psy568 543 PTDPGRKPLSHRFLRHVPVIYVDYPGETSLKQIYGTFSRA 582 (1614)
Q Consensus 543 ~~~~g~~~l~~r~~r~f~~i~i~~p~~~~l~~I~~~~~~~ 582 (1614)
+ ..+.+.+.+|+.++.+..++.+++...+..++..
T Consensus 159 ~-----~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~ 193 (546)
T PRK14957 159 Y-----HKIPVTILSRCIQLHLKHISQADIKDQLKIILAK 193 (546)
T ss_pred h-----hhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHH
Confidence 3 2566679999999999999999988887766543
No 156
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.21 E-value=4.3e-06 Score=104.62 Aligned_cols=140 Identities=16% Similarity=0.180 Sum_probs=94.2
Q ss_pred HHHHHHhcC---CCEEEecCCCCchHHHHHHHHhcCCCC-----------------------ceEEEEcccCCCHHHHHh
Q psy568 408 LLYTWLAEH---KPLVLCGPPGSGKTMTLLSALRALPDM-----------------------EVVSLNFSSATTPELLLK 461 (1614)
Q Consensus 408 ll~~~l~~~---~~vLL~Gp~GtGKT~lv~~~~~~l~~~-----------------------~~~~i~~s~~t~~~~l~~ 461 (1614)
.+..++..+ +..||+||+|||||++++.+++.+... .++.++.++.+..+++..
T Consensus 27 ~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~eidaas~~~v~~iR~ 106 (509)
T PRK14958 27 ALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEVDAASRTKVEDTRE 106 (509)
T ss_pred HHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEEcccccCCHHHHHH
Confidence 344455443 447999999999999999988866321 144566555666666665
Q ss_pred HhhcccceeecCCccccccccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeec
Q psy568 462 TFDHYCEYRKTPNGVILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACN 541 (1614)
Q Consensus 462 ~~~~~~~~~~~~~g~~~~p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n 541 (1614)
.++. ..+.|. .|++-|++|||+|+-..+ ..+.|+..++.- .+.+.||.+++
T Consensus 107 l~~~----------~~~~p~-~~~~kV~iIDE~~~ls~~------a~naLLk~LEep------------p~~~~fIlatt 157 (509)
T PRK14958 107 LLDN----------IPYAPT-KGRFKVYLIDEVHMLSGH------SFNALLKTLEEP------------PSHVKFILATT 157 (509)
T ss_pred HHHH----------Hhhccc-cCCcEEEEEEChHhcCHH------HHHHHHHHHhcc------------CCCeEEEEEEC
Confidence 5532 123343 467778889999995443 445555566641 13566777776
Q ss_pred CCCCCCCCCCcccccccccEEEecCCChhHHHHHHHHHHH
Q psy568 542 PPTDPGRKPLSHRFLRHVPVIYVDYPGETSLKQIYGTFSR 581 (1614)
Q Consensus 542 ~~~~~g~~~l~~r~~r~f~~i~i~~p~~~~l~~I~~~~~~ 581 (1614)
.+. .+++.+.+|+..+.+..++.+++...+..++.
T Consensus 158 d~~-----kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~ 192 (509)
T PRK14958 158 DHH-----KLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLK 192 (509)
T ss_pred ChH-----hchHHHHHHhhhhhcCCCCHHHHHHHHHHHHH
Confidence 543 47777999999999999999998877666554
No 157
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.21 E-value=1.3e-05 Score=90.86 Aligned_cols=159 Identities=14% Similarity=0.099 Sum_probs=88.5
Q ss_pred cCCCEEEecCCCCchHHHHHHHHhcC--CCCceEEEEcccCCCHHHHHhHhhcccceeecCCccccccccCCceEEEEec
Q psy568 415 EHKPLVLCGPPGSGKTMTLLSALRAL--PDMEVVSLNFSSATTPELLLKTFDHYCEYRKTPNGVILSPIQLGKWLVLFCD 492 (1614)
Q Consensus 415 ~~~~vLL~Gp~GtGKT~lv~~~~~~l--~~~~~~~i~~s~~t~~~~l~~~~~~~~~~~~~~~g~~~~p~~~gk~~vlfiD 492 (1614)
.+.+++|+||+|||||+++..+.+.. .+..++.+++...... +. .. + .+ -+++||
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~~------~~------------~~-~--~~--~~liiD 97 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLLA------FD------------FD-P--EA--ELYAVD 97 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHHH------Hh------------hc-c--cC--CEEEEe
Confidence 56799999999999999998888754 3556677776543211 10 00 0 12 356779
Q ss_pred cCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCCCcccccccc---cEEEecCCCh
Q psy568 493 EINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLRHV---PVIYVDYPGE 569 (1614)
Q Consensus 493 din~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r~f---~~i~i~~p~~ 569 (1614)
|++....+ ..+.|..+++.. .. .+ ...++.|++.+. ....+.+.+.+|| ..+.+++|+.
T Consensus 98 di~~l~~~------~~~~L~~~~~~~--~~--~~------~~~vl~~~~~~~--~~~~l~~~L~sr~~~~~~i~l~pl~~ 159 (227)
T PRK08903 98 DVERLDDA------QQIALFNLFNRV--RA--HG------QGALLVAGPAAP--LALPLREDLRTRLGWGLVYELKPLSD 159 (227)
T ss_pred ChhhcCch------HHHHHHHHHHHH--HH--cC------CcEEEEeCCCCH--HhCCCCHHHHHHHhcCeEEEecCCCH
Confidence 99974322 234455555421 00 00 122333333221 1223567777676 5889999999
Q ss_pred hHHHHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHHHhhcCCCCCCccccChhhHHHHhhhhh
Q psy568 570 TSLKQIYGTFSRAMLRLIPPLRGYADALTNAMVELYLASQEKFTQDMQPHYVYSPREMTRWVRGIC 635 (1614)
Q Consensus 570 ~~l~~I~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~hY~F~lRdl~~v~~~i~ 635 (1614)
++...++..+....- ..+.+.....+.. |+.=|+|++..+++.+-
T Consensus 160 ~~~~~~l~~~~~~~~------v~l~~~al~~L~~---------------~~~gn~~~l~~~l~~l~ 204 (227)
T PRK08903 160 ADKIAALKAAAAERG------LQLADEVPDYLLT---------------HFRRDMPSLMALLDALD 204 (227)
T ss_pred HHHHHHHHHHHHHcC------CCCCHHHHHHHHH---------------hccCCHHHHHHHHHHHH
Confidence 887777655433210 1122222222221 33348888888888754
No 158
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.20 E-value=1.4e-05 Score=95.94 Aligned_cols=143 Identities=18% Similarity=0.305 Sum_probs=89.3
Q ss_pred HHHHHHHhcC--CCEEEecCCCCchHHHHHHHHhcCCCC----ceEEEEcccCCCHHHHHhHhhcccceeecCCcccccc
Q psy568 407 SLLYTWLAEH--KPLVLCGPPGSGKTMTLLSALRALPDM----EVVSLNFSSATTPELLLKTFDHYCEYRKTPNGVILSP 480 (1614)
Q Consensus 407 ~ll~~~l~~~--~~vLL~Gp~GtGKT~lv~~~~~~l~~~----~~~~i~~s~~t~~~~l~~~~~~~~~~~~~~~g~~~~p 480 (1614)
..+..++..+ .+++|+||+|||||++++.+++.+.+. .++.++.+.......+...+...+. ..|
T Consensus 27 ~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~i~~~~~---------~~~ 97 (319)
T PRK00440 27 ERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDERGIDVIRNKIKEFAR---------TAP 97 (319)
T ss_pred HHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccccccchHHHHHHHHHHHh---------cCC
Confidence 3455555554 369999999999999999998876322 3445555544443333333322211 112
Q ss_pred ccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCCCccccccccc
Q psy568 481 IQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLRHVP 560 (1614)
Q Consensus 481 ~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r~f~ 560 (1614)
...+.+-+++|||++.-.. ...+.|+.+++.. . ++..+|.++|.+. .+.+.+.+|+.
T Consensus 98 ~~~~~~~vviiDe~~~l~~------~~~~~L~~~le~~---~---------~~~~lIl~~~~~~-----~l~~~l~sr~~ 154 (319)
T PRK00440 98 VGGAPFKIIFLDEADNLTS------DAQQALRRTMEMY---S---------QNTRFILSCNYSS-----KIIDPIQSRCA 154 (319)
T ss_pred CCCCCceEEEEeCcccCCH------HHHHHHHHHHhcC---C---------CCCeEEEEeCCcc-----ccchhHHHHhh
Confidence 2112346778899986322 2345666676641 1 1345666666432 56677889999
Q ss_pred EEEecCCChhHHHHHHHHHHH
Q psy568 561 VIYVDYPGETSLKQIYGTFSR 581 (1614)
Q Consensus 561 ~i~i~~p~~~~l~~I~~~~~~ 581 (1614)
++.++.++.+++..++..++.
T Consensus 155 ~~~~~~l~~~ei~~~l~~~~~ 175 (319)
T PRK00440 155 VFRFSPLKKEAVAERLRYIAE 175 (319)
T ss_pred eeeeCCCCHHHHHHHHHHHHH
Confidence 999999999999888777655
No 159
>KOG0732|consensus
Probab=98.19 E-value=1.1e-05 Score=103.97 Aligned_cols=155 Identities=18% Similarity=0.262 Sum_probs=90.5
Q ss_pred HHHHhcCCCEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCCHHHHHhHhhcccceeecCCccccccccCCceEEE
Q psy568 410 YTWLAEHKPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTPELLLKTFDHYCEYRKTPNGVILSPIQLGKWLVL 489 (1614)
Q Consensus 410 ~~~l~~~~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~~~~l~~~~~~~~~~~~~~~g~~~~p~~~gk~~vl 489 (1614)
...+...+.||++||||||||..++.++..... ..-.+.|-..-.+. ......+..+..- ..++.-++.....|+
T Consensus 293 ~~~itpPrgvL~~GppGTGkTl~araLa~~~s~-~~~kisffmrkgaD-~lskwvgEaERql---rllFeeA~k~qPSII 367 (1080)
T KOG0732|consen 293 NFNITPPRGVLFHGPPGTGKTLMARALAAACSR-GNRKISFFMRKGAD-CLSKWVGEAERQL---RLLFEEAQKTQPSII 367 (1080)
T ss_pred hcccCCCcceeecCCCCCchhHHHHhhhhhhcc-cccccchhhhcCch-hhccccCcHHHHH---HHHHHHHhccCceEE
Confidence 344566789999999999999988888765532 11122222111111 1111111111100 011111223456899
Q ss_pred EeccCCCCCccccC-----cccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCCCcccccc--ccc-E
Q psy568 490 FCDEINLPDMDKYA-----TQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLR--HVP-V 561 (1614)
Q Consensus 490 fiDdin~p~~d~~g-----~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r--~f~-~ 561 (1614)
|+|+|+-.++=... ..++...|..+|+.-. .. ..+.+|||+|.+. .+++++.| ||. .
T Consensus 368 ffdeIdGlapvrSskqEqih~SIvSTLLaLmdGld----sR------gqVvvigATnRpd-----a~dpaLRRPgrfdre 432 (1080)
T KOG0732|consen 368 FFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLD----SR------GQVVVIGATNRPD-----AIDPALRRPGRFDRE 432 (1080)
T ss_pred eccccccccccccchHHHhhhhHHHHHHHhccCCC----CC------CceEEEcccCCcc-----ccchhhcCCccccee
Confidence 99999943332211 2345667777777421 11 2578899999986 47777655 444 7
Q ss_pred EEecCCChhHHHHHHHHHHHhhh
Q psy568 562 IYVDYPGETSLKQIYGTFSRAML 584 (1614)
Q Consensus 562 i~i~~p~~~~l~~I~~~~~~~~~ 584 (1614)
++++.|+.+...+|..-....|.
T Consensus 433 f~f~lp~~~ar~~Il~Ihtrkw~ 455 (1080)
T KOG0732|consen 433 FYFPLPDVDARAKILDIHTRKWE 455 (1080)
T ss_pred EeeeCCchHHHHHHHHHhccCCC
Confidence 89999999999999776655543
No 160
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.17 E-value=1.1e-05 Score=92.90 Aligned_cols=137 Identities=18% Similarity=0.203 Sum_probs=88.2
Q ss_pred HHHhccC-CccEEEeecCCCChHHHHHHHHHHcCCeEEEEEecCCCChhcHHHHHHHHHHHhccCCCcEEEEEcCCcccc
Q psy568 750 DRIFRQP-QGHLLLIGVSGAGKTTLSRFVAFMNGLSVFQIRAHNKYTGADFDEDLRTVLRRSGCKNEKIAFLLDESNVLE 828 (1614)
Q Consensus 750 ~Ril~~p-~gh~LLvG~~GsGKtsl~rlaA~~~~~~~~~i~~~~~~~~~df~~~lk~~l~~ag~~~~~~v~ll~d~~i~~ 828 (1614)
-|++... -++++|+||||+||||+++++|...++.+..++... .+..|.++-+...-...+. |+++++++|+-+=-+
T Consensus 40 rr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~-~gvkdlr~i~e~a~~~~~~-gr~tiLflDEIHRfn 117 (436)
T COG2256 40 RRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT-SGVKDLREIIEEARKNRLL-GRRTILFLDEIHRFN 117 (436)
T ss_pred HHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc-ccHHHHHHHHHHHHHHHhc-CCceEEEEehhhhcC
Confidence 4444432 357999999999999999999999999999887542 2455555444444333343 778888888754322
Q ss_pred cchHHHHHHhhccCCCCCCCChhhHHHHHHHhHHHHHHcCCCCCCHHHHHHHHHHHHhhcceEEEEECCCChhhHHHhhh
Q psy568 829 SGFLERMNTLLANGEIPGLFEGDEYTTLMTQCKEGAQREGLMLDSNEELYKWFTQQVMKNLHVVFTMNPSSEGLKDRAAT 908 (1614)
Q Consensus 829 ~~~le~in~lL~~G~v~~Lf~~eE~~~i~~~~~~~~~~~~~~~~s~~~l~~~f~~rv~~nlhivl~~sp~~~~~r~~~~~ 908 (1614)
..-=+ .|.-.|-+..=+.+--....+.| ..
T Consensus 118 K~QQD----------------------------------------------~lLp~vE~G~iilIGATTENPsF----~l 147 (436)
T COG2256 118 KAQQD----------------------------------------------ALLPHVENGTIILIGATTENPSF----EL 147 (436)
T ss_pred hhhhh----------------------------------------------hhhhhhcCCeEEEEeccCCCCCe----ee
Confidence 11111 12222222222222222222233 45
Q ss_pred CccccccceecccCCCcHHHHHHHHHHhhc
Q psy568 909 SPALFNRCVLNWFGDWSDTALYQVAKEFTS 938 (1614)
Q Consensus 909 ~PaL~~~~~i~wf~~W~~eaL~~va~~~l~ 938 (1614)
+|||.++|.|--|.+.+.+.+..+.++-+.
T Consensus 148 n~ALlSR~~vf~lk~L~~~di~~~l~ra~~ 177 (436)
T COG2256 148 NPALLSRARVFELKPLSSEDIKKLLKRALL 177 (436)
T ss_pred cHHHhhhhheeeeecCCHHHHHHHHHHHHh
Confidence 899999999999999999999999888544
No 161
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.17 E-value=2.3e-05 Score=91.65 Aligned_cols=146 Identities=19% Similarity=0.282 Sum_probs=91.7
Q ss_pred CCEEEecCCCCchHHHHHHHHhcCCCCceEE---EEccc----------------------------------CCCHHHH
Q psy568 417 KPLVLCGPPGSGKTMTLLSALRALPDMEVVS---LNFSS----------------------------------ATTPELL 459 (1614)
Q Consensus 417 ~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~---i~~s~----------------------------------~t~~~~l 459 (1614)
..+|+.|+.|+|||++++.+..-|+....+. ++|.. .++.+.+
T Consensus 39 ggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrv 118 (423)
T COG1239 39 GGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDPEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRL 118 (423)
T ss_pred ceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCChhhhhHHHHhhccccccccccceecceecCCCccchhhh
Confidence 5789999999999999999998887654331 22221 1222224
Q ss_pred HhHhhccc----ceeecCCccccccccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcC-ceeeCCCCceEeecCe
Q psy568 460 LKTFDHYC----EYRKTPNGVILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQR-GFYRPADKQWVSLERI 534 (1614)
Q Consensus 460 ~~~~~~~~----~~~~~~~g~~~~p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~-~~~~~~~~~~~~~~~~ 534 (1614)
.|.++-.- ..+.+..|.+.. ..+.|+||||+|+ -...+...|...+..| ..-.+.+-.+....+|
T Consensus 119 vGslDi~ka~~~g~~af~PGlLa~----AnRGIlYvDEvnl------L~d~lvd~LLd~aaeG~n~vereGisi~hpa~f 188 (423)
T COG1239 119 VGSLDIEKALEEGPKAFQPGLLAR----ANRGILYVDEVNL------LDDHLVDALLDVAAEGVNDVEREGISIRHPARF 188 (423)
T ss_pred ccccCHHHHHhcCccccCCcchhh----ccCCEEEEecccc------ccHHHHHHHHHHHHhCCceeeeCceeeccCccE
Confidence 44432110 112223454433 3468999999999 5556777788888876 2333344455555699
Q ss_pred EEEEeecCCCCCCCCCCccccccccc-EEEecCCCh-hHHHHHH
Q psy568 535 QCVGACNPPTDPGRKPLSHRFLRHVP-VIYVDYPGE-TSLKQIY 576 (1614)
Q Consensus 535 ~~iaa~n~~~~~g~~~l~~r~~r~f~-~i~i~~p~~-~~l~~I~ 576 (1614)
.+||||||..+ +|-+-|+.||- .+.+..|.. +....|.
T Consensus 189 vligTmNPEeG----eLrpqLlDRfg~~v~~~~~~~~~~rv~Ii 228 (423)
T COG1239 189 LLIGTMNPEEG----ELRPQLLDRFGLEVDTHYPLDLEERVEII 228 (423)
T ss_pred EEEeecCcccc----ccchhhHhhhcceeeccCCCCHHHHHHHH
Confidence 99999999863 67777777877 466666654 4444443
No 162
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=98.17 E-value=9.5e-06 Score=105.02 Aligned_cols=145 Identities=18% Similarity=0.248 Sum_probs=92.2
Q ss_pred CCEEEecCCCCchHHHHHHHHhcCC----------------------------------CCceEEEEcccCCCHHHHHhH
Q psy568 417 KPLVLCGPPGSGKTMTLLSALRALP----------------------------------DMEVVSLNFSSATTPELLLKT 462 (1614)
Q Consensus 417 ~~vLL~Gp~GtGKT~lv~~~~~~l~----------------------------------~~~~~~i~~s~~t~~~~l~~~ 462 (1614)
.+|||.||+|||||++++.+.+.++ ..+++.++++ .+...+.|.
T Consensus 26 g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~~~~~~~~~~~~~~~~pfv~~p~~--~t~~~l~G~ 103 (633)
T TIGR02442 26 GGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWCEECRRKYRPSEQRPVPFVNLPLG--ATEDRVVGS 103 (633)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccChhhhhcccccccCCCCeeeCCCC--CcHHHcCCc
Confidence 5799999999999999998887774 1234444443 233444444
Q ss_pred hhcc--cc--eeecCCccccccccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceee-CCCCceEeecCeEEE
Q psy568 463 FDHY--CE--YRKTPNGVILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYR-PADKQWVSLERIQCV 537 (1614)
Q Consensus 463 ~~~~--~~--~~~~~~g~~~~p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~-~~~~~~~~~~~~~~i 537 (1614)
++-. +. ......|.+..+ ...++||||+|. .+..+.+.|.+.++.|.+.. +.+.......++.+|
T Consensus 104 ~d~~~~l~~g~~~~~~G~L~~A----~~GiL~lDEi~~------l~~~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lI 173 (633)
T TIGR02442 104 LDIERALREGEKAFQPGLLAEA----HRGILYIDEVNL------LDDHLVDVLLDAAAMGVNRVEREGLSVSHPARFVLI 173 (633)
T ss_pred ccHHHHhhcCCeeecCcceeec----CCCeEEeChhhh------CCHHHHHHHHHHHhcCCEEEEECCceeeecCCeEEE
Confidence 3111 10 011112443322 336899999999 55557888999999886433 333344444689999
Q ss_pred EeecCCCCCCCCCCcccccccccE-EEecCCC-hhHHHHHHH
Q psy568 538 GACNPPTDPGRKPLSHRFLRHVPV-IYVDYPG-ETSLKQIYG 577 (1614)
Q Consensus 538 aa~n~~~~~g~~~l~~r~~r~f~~-i~i~~p~-~~~l~~I~~ 577 (1614)
+|+||.. | .+++.|+.||.+ +.++.+. .++...|+.
T Consensus 174 at~np~e--g--~l~~~L~dR~~l~i~v~~~~~~~~~~~il~ 211 (633)
T TIGR02442 174 GTMNPEE--G--DLRPQLLDRFGLCVDVAAPRDPEERVEIIR 211 (633)
T ss_pred EecCCCC--C--CCCHHHHhhcceEEEccCCCchHHHHHHHH
Confidence 9999864 2 688999999973 5666664 344455544
No 163
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.16 E-value=8.3e-06 Score=104.90 Aligned_cols=151 Identities=15% Similarity=0.160 Sum_probs=90.2
Q ss_pred cCCCEEEecCCCCchHHHHHHHHhcCCC------CceEEEEcccCCCHHHHHhHhhcccceeecCCccccccccCCceEE
Q psy568 415 EHKPLVLCGPPGSGKTMTLLSALRALPD------MEVVSLNFSSATTPELLLKTFDHYCEYRKTPNGVILSPIQLGKWLV 488 (1614)
Q Consensus 415 ~~~~vLL~Gp~GtGKT~lv~~~~~~l~~------~~~~~i~~s~~t~~~~l~~~~~~~~~~~~~~~g~~~~p~~~gk~~v 488 (1614)
...||||+|+||||||.+++.+.+..+. .+...+.+++.. . ..+..........|.+..+ ...+
T Consensus 491 gdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~vgLTa~~----~--~~d~~tG~~~le~GaLvlA----dgGt 560 (915)
T PTZ00111 491 GIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSVGLTASI----K--FNESDNGRAMIQPGAVVLA----NGGV 560 (915)
T ss_pred CCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccccccchh----h--hcccccCcccccCCcEEEc----CCCe
Confidence 3459999999999999998877654321 222333333210 1 0111000011123554433 1257
Q ss_pred EEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceE-eecCeEEEEeecCCCCC--------CCCCCcccccccc
Q psy568 489 LFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWV-SLERIQCVGACNPPTDP--------GRKPLSHRFLRHV 559 (1614)
Q Consensus 489 lfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~-~~~~~~~iaa~n~~~~~--------g~~~l~~r~~r~f 559 (1614)
+||||++. .+......|..+|+.+.+-..+.+... ...++++|||+||.++. +.-.+|+.+++||
T Consensus 561 L~IDEidk------ms~~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLSRF 634 (915)
T PTZ00111 561 CCIDELDK------CHNESRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFTRF 634 (915)
T ss_pred EEecchhh------CCHHHHHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhhhh
Confidence 78899997 444455666778888776443333333 33589999999997521 3467899999999
Q ss_pred cEE--EecCCChhHHHHHHHHHHH
Q psy568 560 PVI--YVDYPGETSLKQIYGTFSR 581 (1614)
Q Consensus 560 ~~i--~i~~p~~~~l~~I~~~~~~ 581 (1614)
-.| .++.|+.+.=..|-..++.
T Consensus 635 DLIf~l~D~~d~~~D~~lA~hI~~ 658 (915)
T PTZ00111 635 DLIYLVLDHIDQDTDQLISLSIAK 658 (915)
T ss_pred cEEEEecCCCChHHHHHHHHHHHH
Confidence 754 4567777665566554444
No 164
>PRK06620 hypothetical protein; Validated
Probab=98.16 E-value=2.8e-05 Score=86.47 Aligned_cols=138 Identities=13% Similarity=0.190 Sum_probs=81.8
Q ss_pred cceeeeCcchhhHHHHHHHHHhc-C-----CCEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCCHHHHHhHhhcc
Q psy568 393 SDVVVPTLDTVRHESLLYTWLAE-H-----KPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTPELLLKTFDHY 466 (1614)
Q Consensus 393 ~~~~vpT~~t~r~~~ll~~~l~~-~-----~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~~~~l~~~~~~~ 466 (1614)
.+.||...........+..+... + .+++|+||+|||||++++.+.+.. +..++ . .... ..
T Consensus 15 fd~Fvvg~~N~~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~-~~~~~--~------~~~~---~~-- 80 (214)
T PRK06620 15 PDEFIVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLS-NAYII--K------DIFF---NE-- 80 (214)
T ss_pred chhhEecccHHHHHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHHHhcc-CCEEc--c------hhhh---ch--
Confidence 34566666444444455555542 1 459999999999999998765543 32111 1 0000 00
Q ss_pred cceeecCCccccccccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCC
Q psy568 467 CEYRKTPNGVILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDP 546 (1614)
Q Consensus 467 ~~~~~~~~g~~~~p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~ 546 (1614)
. .+ +..-+++||||+.- .......++..+.+.|+ ..++++..+|.
T Consensus 81 --------~-~~-----~~~d~lliDdi~~~-----~~~~lf~l~N~~~e~g~--------------~ilits~~~p~-- 125 (214)
T PRK06620 81 --------E-IL-----EKYNAFIIEDIENW-----QEPALLHIFNIINEKQK--------------YLLLTSSDKSR-- 125 (214)
T ss_pred --------h-HH-----hcCCEEEEeccccc-----hHHHHHHHHHHHHhcCC--------------EEEEEcCCCcc--
Confidence 0 01 11236778999931 11234445555555432 23455555554
Q ss_pred CCCCCccccccccc---EEEecCCChhHHHHHHHHHHH
Q psy568 547 GRKPLSHRFLRHVP---VIYVDYPGETSLKQIYGTFSR 581 (1614)
Q Consensus 547 g~~~l~~r~~r~f~---~i~i~~p~~~~l~~I~~~~~~ 581 (1614)
...+ +++.+|+. ++.+..|+.+++..+......
T Consensus 126 -~l~l-~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~ 161 (214)
T PRK06620 126 -NFTL-PDLSSRIKSVLSILLNSPDDELIKILIFKHFS 161 (214)
T ss_pred -ccch-HHHHHHHhCCceEeeCCCCHHHHHHHHHHHHH
Confidence 2247 89999999 999999999999888776554
No 165
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.15 E-value=2.7e-05 Score=97.13 Aligned_cols=140 Identities=15% Similarity=0.233 Sum_probs=88.0
Q ss_pred HHHHHHhcC---CCEEEecCCCCchHHHHHHHHhcCCCC-----------------------ceEEEEcccCCCHHHHHh
Q psy568 408 LLYTWLAEH---KPLVLCGPPGSGKTMTLLSALRALPDM-----------------------EVVSLNFSSATTPELLLK 461 (1614)
Q Consensus 408 ll~~~l~~~---~~vLL~Gp~GtGKT~lv~~~~~~l~~~-----------------------~~~~i~~s~~t~~~~l~~ 461 (1614)
.+..++..| +..|++||+|+|||++++.+++.+... .++.++.++....+++..
T Consensus 27 ~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h~DiieIdaas~igVd~IRe 106 (605)
T PRK05896 27 ILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVDIVELDAASNNGVDEIRN 106 (605)
T ss_pred HHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCCCceEEeccccccCHHHHHH
Confidence 344455443 458999999999999999998876311 122233322334444444
Q ss_pred HhhcccceeecCCccccccccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeec
Q psy568 462 TFDHYCEYRKTPNGVILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACN 541 (1614)
Q Consensus 462 ~~~~~~~~~~~~~g~~~~p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n 541 (1614)
.++. +. ..|.. +++-|++|||+++-. ......|+..++... +.+.||.+++
T Consensus 107 Ii~~-~~---------~~P~~-~~~KVIIIDEad~Lt------~~A~NaLLKtLEEPp------------~~tvfIL~Tt 157 (605)
T PRK05896 107 IIDN-IN---------YLPTT-FKYKVYIIDEAHMLS------TSAWNALLKTLEEPP------------KHVVFIFATT 157 (605)
T ss_pred HHHH-HH---------hchhh-CCcEEEEEechHhCC------HHHHHHHHHHHHhCC------------CcEEEEEECC
Confidence 3321 11 22332 344568899999843 234455666666411 2456666665
Q ss_pred CCCCCCCCCCcccccccccEEEecCCChhHHHHHHHHHHH
Q psy568 542 PPTDPGRKPLSHRFLRHVPVIYVDYPGETSLKQIYGTFSR 581 (1614)
Q Consensus 542 ~~~~~g~~~l~~r~~r~f~~i~i~~p~~~~l~~I~~~~~~ 581 (1614)
.+ ..+.+.+.+|+.++.+..|+.+++...+..++.
T Consensus 158 ~~-----~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~ 192 (605)
T PRK05896 158 EF-----QKIPLTIISRCQRYNFKKLNNSELQELLKSIAK 192 (605)
T ss_pred Ch-----HhhhHHHHhhhhhcccCCCCHHHHHHHHHHHHH
Confidence 43 368888999999999999999999988777654
No 166
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.14 E-value=2.2e-05 Score=96.84 Aligned_cols=161 Identities=17% Similarity=0.206 Sum_probs=89.0
Q ss_pred ceeeeCcchhhHHHHHHHHHh--------cCCCEEEecCCCCchHHHHHHHHhcCC--CCceEEEEcccCCCHHHHHhHh
Q psy568 394 DVVVPTLDTVRHESLLYTWLA--------EHKPLVLCGPPGSGKTMTLLSALRALP--DMEVVSLNFSSATTPELLLKTF 463 (1614)
Q Consensus 394 ~~~vpT~~t~r~~~ll~~~l~--------~~~~vLL~Gp~GtGKT~lv~~~~~~l~--~~~~~~i~~s~~t~~~~l~~~~ 463 (1614)
+.||..+........+..+.. ...|++|+||+|+|||+++..++..+. +..++.++....+ ..+...+
T Consensus 111 dnFv~g~~N~~a~~~a~~~a~~~~~~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~--~~~~~~l 188 (445)
T PRK12422 111 ANFLVTPENDLPHRILQEFTKVSEQGKGFPFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFT--EHLVSAI 188 (445)
T ss_pred cceeeCCcHHHHHHHHHHHHhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHH--HHHHHHH
Confidence 456655544433333443432 126899999999999999998887652 4455555442211 1222222
Q ss_pred hc-ccceeecCCccccccccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeec-
Q psy568 464 DH-YCEYRKTPNGVILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACN- 541 (1614)
Q Consensus 464 ~~-~~~~~~~~~g~~~~p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n- 541 (1614)
.. ..+ .+... -...-+++|||++.-.......+..+.++..+.+.| -.+|.|++
T Consensus 189 ~~~~~~--------~f~~~-~~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~---------------k~IIlts~~ 244 (445)
T PRK12422 189 RSGEMQ--------RFRQF-YRNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEG---------------KLIVISSTC 244 (445)
T ss_pred hcchHH--------HHHHH-cccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCC---------------CcEEEecCC
Confidence 11 000 00010 012247778999985433222223333333333321 12444444
Q ss_pred CCCCCCCCCCcccccccc---cEEEecCCChhHHHHHHHHHHHh
Q psy568 542 PPTDPGRKPLSHRFLRHV---PVIYVDYPGETSLKQIYGTFSRA 582 (1614)
Q Consensus 542 ~~~~~g~~~l~~r~~r~f---~~i~i~~p~~~~l~~I~~~~~~~ 582 (1614)
+|. .-..+.+|+.+|| .++.++.|+.+++..|+......
T Consensus 245 ~p~--~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~ 286 (445)
T PRK12422 245 APQ--DLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEA 286 (445)
T ss_pred CHH--HHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHH
Confidence 332 2235889999999 48899999999999998776554
No 167
>KOG0989|consensus
Probab=98.13 E-value=5.4e-06 Score=91.90 Aligned_cols=147 Identities=18% Similarity=0.234 Sum_probs=93.4
Q ss_pred HHHHh-cCCCEEEecCCCCchHHHHHHHHhcCCCCc-----eEEEEcccCCCHHHHHhHhhcccceeecCCccccccccC
Q psy568 410 YTWLA-EHKPLVLCGPPGSGKTMTLLSALRALPDME-----VVSLNFSSATTPELLLKTFDHYCEYRKTPNGVILSPIQL 483 (1614)
Q Consensus 410 ~~~l~-~~~~vLL~Gp~GtGKT~lv~~~~~~l~~~~-----~~~i~~s~~t~~~~l~~~~~~~~~~~~~~~g~~~~p~~~ 483 (1614)
..+.. ..-+.|++||||||||+.+..+++.+.+.. +...|-|.....+.+...+...-.-+...++....|.
T Consensus 50 ~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr~Kik~fakl~~~~~~~~~~~~-- 127 (346)
T KOG0989|consen 50 NALLRRILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVREKIKNFAKLTVLLKRSDGYPC-- 127 (346)
T ss_pred HHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccchhhhhcCHHHHhhccccccCCCC--
Confidence 33344 345678999999999999999999875422 2334555444433333333221110000012222232
Q ss_pred CceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCCCcccccccccEEE
Q psy568 484 GKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLRHVPVIY 563 (1614)
Q Consensus 484 gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r~f~~i~ 563 (1614)
...-|+.+||.+. -++.+...||..+|. |. ..++||--||..+ .++..+.+|+.-+.
T Consensus 128 ~~fKiiIlDEcds------mtsdaq~aLrr~mE~---~s---------~~trFiLIcnyls-----rii~pi~SRC~Kfr 184 (346)
T KOG0989|consen 128 PPFKIIILDECDS------MTSDAQAALRRTMED---FS---------RTTRFILICNYLS-----RIIRPLVSRCQKFR 184 (346)
T ss_pred CcceEEEEechhh------hhHHHHHHHHHHHhc---cc---------cceEEEEEcCChh-----hCChHHHhhHHHhc
Confidence 1224566699998 556677889999986 22 2578888898876 68888999999999
Q ss_pred ecCCChhHHHHHHHHHHH
Q psy568 564 VDYPGETSLKQIYGTFSR 581 (1614)
Q Consensus 564 i~~p~~~~l~~I~~~~~~ 581 (1614)
++...++.+...+..|..
T Consensus 185 Fk~L~d~~iv~rL~~Ia~ 202 (346)
T KOG0989|consen 185 FKKLKDEDIVDRLEKIAS 202 (346)
T ss_pred CCCcchHHHHHHHHHHHH
Confidence 999999887777666544
No 168
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.12 E-value=1.7e-05 Score=98.10 Aligned_cols=161 Identities=19% Similarity=0.168 Sum_probs=87.8
Q ss_pred ceeeeCcchhhHHHHHHHHHhc----CCCEEEecCCCCchHHHHHHHHhcCC----CCceEEEEcccCCCHHHHHhHhhc
Q psy568 394 DVVVPTLDTVRHESLLYTWLAE----HKPLVLCGPPGSGKTMTLLSALRALP----DMEVVSLNFSSATTPELLLKTFDH 465 (1614)
Q Consensus 394 ~~~vpT~~t~r~~~ll~~~l~~----~~~vLL~Gp~GtGKT~lv~~~~~~l~----~~~~~~i~~s~~t~~~~l~~~~~~ 465 (1614)
+.|++..+.......+..+... ..|++|+||+|+|||++++.+...+. +..++.+++.... ..+...+..
T Consensus 110 d~fi~g~~n~~a~~~~~~~~~~~~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~--~~~~~~~~~ 187 (405)
T TIGR00362 110 DNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFT--NDFVNALRN 187 (405)
T ss_pred cccccCCcHHHHHHHHHHHHhCcCccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHH--HHHHHHHHc
Confidence 4455555544333344444332 35799999999999999988876542 3456666653221 112221111
Q ss_pred ccceeecCCccccccccCCceEEEEeccCCCCCccccCcc-cHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeec-CC
Q psy568 466 YCEYRKTPNGVILSPIQLGKWLVLFCDEINLPDMDKYATQ-RVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACN-PP 543 (1614)
Q Consensus 466 ~~~~~~~~~g~~~~p~~~gk~~vlfiDdin~p~~d~~g~q-~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n-~~ 543 (1614)
. . ...+..-. ...-+++|||++...... ++| ..+.++..+.+.+ ..+|.|++ +|
T Consensus 188 ~----~--~~~~~~~~--~~~dlLiiDDi~~l~~~~-~~~~~l~~~~n~~~~~~---------------~~iiits~~~p 243 (405)
T TIGR00362 188 N----K--MEEFKEKY--RSVDLLLIDDIQFLAGKE-RTQEEFFHTFNALHENG---------------KQIVLTSDRPP 243 (405)
T ss_pred C----C--HHHHHHHH--HhCCEEEEehhhhhcCCH-HHHHHHHHHHHHHHHCC---------------CCEEEecCCCH
Confidence 0 0 00000000 012367789999743321 122 2334444443321 12334444 44
Q ss_pred CCCCCCCCccccccccc---EEEecCCChhHHHHHHHHHHHh
Q psy568 544 TDPGRKPLSHRFLRHVP---VIYVDYPGETSLKQIYGTFSRA 582 (1614)
Q Consensus 544 ~~~g~~~l~~r~~r~f~---~i~i~~p~~~~l~~I~~~~~~~ 582 (1614)
. .-..+.+|+.+||. ++.++.|+.+++..|+...+..
T Consensus 244 ~--~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~ 283 (405)
T TIGR00362 244 K--ELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKAEE 283 (405)
T ss_pred H--HHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 3 22347789999985 6999999999999998876654
No 169
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.12 E-value=0.0075 Score=86.33 Aligned_cols=29 Identities=21% Similarity=0.437 Sum_probs=25.2
Q ss_pred CCccEEEeecCCCChHHHHHHHHHHcCCe
Q psy568 756 PQGHLLLIGVSGAGKTTLSRFVAFMNGLS 784 (1614)
Q Consensus 756 p~gh~LLvG~~GsGKtsl~rlaA~~~~~~ 784 (1614)
..|-.+++||.|||||++...+.+++|..
T Consensus 22 ~~~~~~i~G~NGsGKS~ll~ai~~~lg~~ 50 (1179)
T TIGR02168 22 DKGITGIVGPNGCGKSNIVDAIRWVLGEQ 50 (1179)
T ss_pred cCCcEEEECCCCCChhHHHHHHHHHHcCC
Confidence 45678999999999999999999998754
No 170
>PRK08727 hypothetical protein; Validated
Probab=98.08 E-value=1.2e-05 Score=91.01 Aligned_cols=131 Identities=13% Similarity=0.107 Sum_probs=76.1
Q ss_pred CCCEEEecCCCCchHHHHHHHHhcCC--CCceEEEEcccCCCHHHHHhHhhcccceeecCCccccccccCCceEEEEecc
Q psy568 416 HKPLVLCGPPGSGKTMTLLSALRALP--DMEVVSLNFSSATTPELLLKTFDHYCEYRKTPNGVILSPIQLGKWLVLFCDE 493 (1614)
Q Consensus 416 ~~~vLL~Gp~GtGKT~lv~~~~~~l~--~~~~~~i~~s~~t~~~~l~~~~~~~~~~~~~~~g~~~~p~~~gk~~vlfiDd 493 (1614)
..+++|+||+|||||.++..++.... +.....+++..... .+...++. + .+.-+++|||
T Consensus 41 ~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~--~~~~~~~~-----------l------~~~dlLiIDD 101 (233)
T PRK08727 41 SDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAG--RLRDALEA-----------L------EGRSLVALDG 101 (233)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhh--hHHHHHHH-----------H------hcCCEEEEeC
Confidence 35799999999999999988765432 44555565433221 11111110 0 1123677799
Q ss_pred CCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCCCccccccc---ccEEEecCCChh
Q psy568 494 INLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLRH---VPVIYVDYPGET 570 (1614)
Q Consensus 494 in~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r~---f~~i~i~~p~~~ 570 (1614)
++....+... ..+++ .++++. +.. +..+|.|++.+. ..-..+.+++.+| ..++.++.|+.+
T Consensus 102 i~~l~~~~~~---~~~lf-~l~n~~--~~~---------~~~vI~ts~~~p-~~l~~~~~dL~SRl~~~~~~~l~~~~~e 165 (233)
T PRK08727 102 LESIAGQRED---EVALF-DFHNRA--RAA---------GITLLYTARQMP-DGLALVLPDLRSRLAQCIRIGLPVLDDV 165 (233)
T ss_pred cccccCChHH---HHHHH-HHHHHH--HHc---------CCeEEEECCCCh-hhhhhhhHHHHHHHhcCceEEecCCCHH
Confidence 9975543211 11222 343321 111 233566665432 2333467889888 458899999999
Q ss_pred HHHHHHHHHHH
Q psy568 571 SLKQIYGTFSR 581 (1614)
Q Consensus 571 ~l~~I~~~~~~ 581 (1614)
++..|+.....
T Consensus 166 ~~~~iL~~~a~ 176 (233)
T PRK08727 166 ARAAVLRERAQ 176 (233)
T ss_pred HHHHHHHHHHH
Confidence 99999886543
No 171
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.08 E-value=0.021 Score=80.15 Aligned_cols=34 Identities=35% Similarity=0.638 Sum_probs=30.2
Q ss_pred cCCccEEEeecCCCChHHHHHHHHHHcCCeEEEE
Q psy568 755 QPQGHLLLIGVSGAGKTTLSRFVAFMNGLSVFQI 788 (1614)
Q Consensus 755 ~p~gh~LLvG~~GsGKtsl~rlaA~~~~~~~~~i 788 (1614)
...||+-++|..|+||||+.|++-+-.|...-.+
T Consensus 15 ~lDG~t~i~GTNG~GKTTlLRlip~FYGa~p~rl 48 (1201)
T PF12128_consen 15 KLDGHTHICGTNGVGKTTLLRLIPFFYGADPSRL 48 (1201)
T ss_pred ecCCceeeecCCCCcHHHHHHHHHHhcCCCcccc
Confidence 4579999999999999999999998888876666
No 172
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.08 E-value=2.2e-05 Score=97.87 Aligned_cols=139 Identities=17% Similarity=0.177 Sum_probs=80.5
Q ss_pred CCEEEecCCCCchHHHHHHHHhcC----CCCceEEEEcccCCCHHHHHhHhhc-ccceeecCCccccccccCCceEEEEe
Q psy568 417 KPLVLCGPPGSGKTMTLLSALRAL----PDMEVVSLNFSSATTPELLLKTFDH-YCEYRKTPNGVILSPIQLGKWLVLFC 491 (1614)
Q Consensus 417 ~~vLL~Gp~GtGKT~lv~~~~~~l----~~~~~~~i~~s~~t~~~~l~~~~~~-~~~~~~~~~g~~~~p~~~gk~~vlfi 491 (1614)
.|++|+|++|+|||.|+..+.... .+..++.+++.... +.+...+.. ..+... .. + .+.-+|+|
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~--~el~~al~~~~~~~f~---~~-y-----~~~DLLlI 383 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFT--NEFINSIRDGKGDSFR---RR-Y-----REMDILLV 383 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHH--HHHHHHHHhccHHHHH---HH-h-----hcCCEEEE
Confidence 579999999999999998888754 24455666553221 111111110 000000 00 1 11236777
Q ss_pred ccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCCCccccccccc---EEEecCCC
Q psy568 492 DEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLRHVP---VIYVDYPG 568 (1614)
Q Consensus 492 Ddin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r~f~---~i~i~~p~ 568 (1614)
|||+............+.++..+.+.+ -.+|.|++.+. ..-..+.+||.+||. ++.|..|+
T Consensus 384 DDIq~l~gke~tqeeLF~l~N~l~e~g---------------k~IIITSd~~P-~eL~~l~~rL~SRf~~GLvv~I~~PD 447 (617)
T PRK14086 384 DDIQFLEDKESTQEEFFHTFNTLHNAN---------------KQIVLSSDRPP-KQLVTLEDRLRNRFEWGLITDVQPPE 447 (617)
T ss_pred ehhccccCCHHHHHHHHHHHHHHHhcC---------------CCEEEecCCCh-HhhhhccHHHHhhhhcCceEEcCCCC
Confidence 999986543322233445555554432 12344555432 123458899999996 78999999
Q ss_pred hhHHHHHHHHHHHh
Q psy568 569 ETSLKQIYGTFSRA 582 (1614)
Q Consensus 569 ~~~l~~I~~~~~~~ 582 (1614)
.+....|+...+..
T Consensus 448 ~EtR~aIL~kka~~ 461 (617)
T PRK14086 448 LETRIAILRKKAVQ 461 (617)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999998776543
No 173
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.07 E-value=1.7e-05 Score=98.17 Aligned_cols=162 Identities=17% Similarity=0.152 Sum_probs=88.2
Q ss_pred ceeeeCcchhhHHHHHHHHHh-cC--CCEEEecCCCCchHHHHHHHHhcC----CCCceEEEEcccCCCHHHHHhHhhcc
Q psy568 394 DVVVPTLDTVRHESLLYTWLA-EH--KPLVLCGPPGSGKTMTLLSALRAL----PDMEVVSLNFSSATTPELLLKTFDHY 466 (1614)
Q Consensus 394 ~~~vpT~~t~r~~~ll~~~l~-~~--~~vLL~Gp~GtGKT~lv~~~~~~l----~~~~~~~i~~s~~t~~~~l~~~~~~~ 466 (1614)
+.||..+.............. .+ .|++|+||+|+|||.++..++..+ ++..++.++++.. ...+...+...
T Consensus 105 dnFv~g~~n~~a~~~~~~~~~~~~~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f--~~~~~~~~~~~ 182 (440)
T PRK14088 105 ENFVVGPGNSFAYHAALEVAKNPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKF--LNDLVDSMKEG 182 (440)
T ss_pred cccccCCchHHHHHHHHHHHhCcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHH--HHHHHHHHhcc
Confidence 456656554433333333333 33 589999999999999998887654 2334555554321 11111111100
Q ss_pred cceeecCCccccccccCCceEEEEeccCCCCCccccCcc-cHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCC
Q psy568 467 CEYRKTPNGVILSPIQLGKWLVLFCDEINLPDMDKYATQ-RVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTD 545 (1614)
Q Consensus 467 ~~~~~~~~g~~~~p~~~gk~~vlfiDdin~p~~d~~g~q-~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~ 545 (1614)
.. ..+..-. ....-+++|||++..... .++| ..+.+++.+.+.+. ..++++..+|.
T Consensus 183 ----~~--~~f~~~~-~~~~dvLlIDDi~~l~~~-~~~q~elf~~~n~l~~~~k--------------~iIitsd~~p~- 239 (440)
T PRK14088 183 ----KL--NEFREKY-RKKVDVLLIDDVQFLIGK-TGVQTELFHTFNELHDSGK--------------QIVICSDREPQ- 239 (440)
T ss_pred ----cH--HHHHHHH-HhcCCEEEEechhhhcCc-HHHHHHHHHHHHHHHHcCC--------------eEEEECCCCHH-
Confidence 00 0000000 011236778999964221 1232 34455555555321 12333334443
Q ss_pred CCCCCCccccccccc---EEEecCCChhHHHHHHHHHHH
Q psy568 546 PGRKPLSHRFLRHVP---VIYVDYPGETSLKQIYGTFSR 581 (1614)
Q Consensus 546 ~g~~~l~~r~~r~f~---~i~i~~p~~~~l~~I~~~~~~ 581 (1614)
.-..+.+|+.+||. ++.++.|+.+.+..|+.....
T Consensus 240 -~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~ 277 (440)
T PRK14088 240 -KLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLE 277 (440)
T ss_pred -HHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHH
Confidence 22347789999998 889999999999999877654
No 174
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.07 E-value=1.4e-05 Score=97.62 Aligned_cols=141 Identities=17% Similarity=0.252 Sum_probs=86.4
Q ss_pred HHHHHHhcCC---CEEEecCCCCchHHHHHHHHhcCCC-----------------------CceEEEEcccCCCHHHHHh
Q psy568 408 LLYTWLAEHK---PLVLCGPPGSGKTMTLLSALRALPD-----------------------MEVVSLNFSSATTPELLLK 461 (1614)
Q Consensus 408 ll~~~l~~~~---~vLL~Gp~GtGKT~lv~~~~~~l~~-----------------------~~~~~i~~s~~t~~~~l~~ 461 (1614)
.+..++..|+ .+||+||+|+|||++++.+++.+.. ..++.++-+...+..++..
T Consensus 25 ~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (355)
T TIGR02397 25 TLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDVIEIDAASNNGVDDIRE 104 (355)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEeeccccCCHHHHHH
Confidence 3444555553 4799999999999999988877531 1233444443444444444
Q ss_pred HhhcccceeecCCccccccccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeec
Q psy568 462 TFDHYCEYRKTPNGVILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACN 541 (1614)
Q Consensus 462 ~~~~~~~~~~~~~g~~~~p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n 541 (1614)
.++. +. ..|. .|++-|++|||++.-. ......|...++.. .+++.+|.+++
T Consensus 105 l~~~-~~---------~~p~-~~~~~vviidea~~l~------~~~~~~Ll~~le~~------------~~~~~lIl~~~ 155 (355)
T TIGR02397 105 ILDN-VK---------YAPS-SGKYKVYIIDEVHMLS------KSAFNALLKTLEEP------------PEHVVFILATT 155 (355)
T ss_pred HHHH-Hh---------cCcc-cCCceEEEEeChhhcC------HHHHHHHHHHHhCC------------ccceeEEEEeC
Confidence 4432 11 1232 2344577789997632 22333343444431 12466666665
Q ss_pred CCCCCCCCCCcccccccccEEEecCCChhHHHHHHHHHHHh
Q psy568 542 PPTDPGRKPLSHRFLRHVPVIYVDYPGETSLKQIYGTFSRA 582 (1614)
Q Consensus 542 ~~~~~g~~~l~~r~~r~f~~i~i~~p~~~~l~~I~~~~~~~ 582 (1614)
.+. .+.+.+.+|+..+.++.|+.+++..+...++..
T Consensus 156 ~~~-----~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~ 191 (355)
T TIGR02397 156 EPH-----KIPATILSRCQRFDFKRIPLEDIVERLKKILDK 191 (355)
T ss_pred CHH-----HHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHH
Confidence 432 577889999999999999999999887776553
No 175
>KOG1969|consensus
Probab=98.07 E-value=5.5e-05 Score=92.66 Aligned_cols=145 Identities=23% Similarity=0.321 Sum_probs=96.3
Q ss_pred CCEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCCHHHHHhHhhcccceeecCCccccccccCCceEEEEeccCCC
Q psy568 417 KPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTPELLLKTFDHYCEYRKTPNGVILSPIQLGKWLVLFCDEINL 496 (1614)
Q Consensus 417 ~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~~~~l~~~~~~~~~~~~~~~g~~~~p~~~gk~~vlfiDdin~ 496 (1614)
+=.||+||||-||||++.-+++ -.|+.++.||.|..-++..+...++......+ ++.+ .+++.++.||||+-
T Consensus 327 KilLL~GppGlGKTTLAHViAk-qaGYsVvEINASDeRt~~~v~~kI~~avq~~s-----~l~a--dsrP~CLViDEIDG 398 (877)
T KOG1969|consen 327 KILLLCGPPGLGKTTLAHVIAK-QAGYSVVEINASDERTAPMVKEKIENAVQNHS-----VLDA--DSRPVCLVIDEIDG 398 (877)
T ss_pred ceEEeecCCCCChhHHHHHHHH-hcCceEEEecccccccHHHHHHHHHHHHhhcc-----cccc--CCCcceEEEecccC
Confidence 3469999999999997755554 45999999999999999999888877554332 3333 35567777899998
Q ss_pred CCccccCcccHHHHHHHHHHcCc--eeeCCC--------CceEeecCeEEEEeecCCCCCCCCCCccccccccc-EEEec
Q psy568 497 PDMDKYATQRVISFLRQLIEQRG--FYRPAD--------KQWVSLERIQCVGACNPPTDPGRKPLSHRFLRHVP-VIYVD 565 (1614)
Q Consensus 497 p~~d~~g~q~~lelLrqlld~~~--~~~~~~--------~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r~f~-~i~i~ 565 (1614)
+....+..|+.++...+ -+.... .....+-. =|||-||.-+. =.-|=+|-|. ++++.
T Consensus 399 ------a~~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~R-PIICICNdLYa-----PaLR~Lr~~A~ii~f~ 466 (877)
T KOG1969|consen 399 ------APRAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTR-PIICICNDLYA-----PALRPLRPFAEIIAFV 466 (877)
T ss_pred ------CcHHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccC-CEEEEecCccc-----hhhhhcccceEEEEec
Confidence 44446777788776322 221111 11122211 25778887651 1223356666 88999
Q ss_pred CCChhHHHHHHHHHHH
Q psy568 566 YPGETSLKQIYGTFSR 581 (1614)
Q Consensus 566 ~p~~~~l~~I~~~~~~ 581 (1614)
.|+.+.+..-++.++.
T Consensus 467 ~p~~s~Lv~RL~~IC~ 482 (877)
T KOG1969|consen 467 PPSQSRLVERLNEICH 482 (877)
T ss_pred CCChhHHHHHHHHHHh
Confidence 9999988877666654
No 176
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.06 E-value=4.7e-05 Score=95.91 Aligned_cols=210 Identities=17% Similarity=0.158 Sum_probs=119.5
Q ss_pred chhhHHHHHHHHHhcCCCEEEecCCCCchHHHHHHHHhcC--CCCceEEEEcccCCCHHHHHhHhhccc----c-eeecC
Q psy568 401 DTVRHESLLYTWLAEHKPLVLCGPPGSGKTMTLLSALRAL--PDMEVVSLNFSSATTPELLLKTFDHYC----E-YRKTP 473 (1614)
Q Consensus 401 ~t~r~~~ll~~~l~~~~~vLL~Gp~GtGKT~lv~~~~~~l--~~~~~~~i~~s~~t~~~~l~~~~~~~~----~-~~~~~ 473 (1614)
...+....+..+...+.||++.|++||||+++++.+.... .+.+++.++|+.... +.+...+-+.- . .....
T Consensus 147 ~~~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~-~~~~~~lfg~~~~~~~~~~~~~ 225 (445)
T TIGR02915 147 GMQKICRTIEKIAPSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPE-NLLESELFGYEKGAFTGAVKQT 225 (445)
T ss_pred HHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCCh-HHHHHHhcCCCCCCcCCCccCC
Confidence 3444555666667789999999999999999887776543 345789999987643 33333321110 0 00001
Q ss_pred CccccccccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCC--CCCCCC
Q psy568 474 NGVILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTD--PGRKPL 551 (1614)
Q Consensus 474 ~g~~~~p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~--~g~~~l 551 (1614)
.|.+..+ ...++||||++. -+.....-|.++++.+.+...+.. .....++++|+|++.+-. .....+
T Consensus 226 ~g~~~~a----~~gtl~l~~i~~------l~~~~q~~l~~~l~~~~~~~~~~~-~~~~~~~rii~~~~~~l~~~~~~~~~ 294 (445)
T TIGR02915 226 LGKIEYA----HGGTLFLDEIGD------LPLNLQAKLLRFLQERVIERLGGR-EEIPVDVRIVCATNQDLKRMIAEGTF 294 (445)
T ss_pred CCceeEC----CCCEEEEechhh------CCHHHHHHHHHHHhhCeEEeCCCC-ceeeeceEEEEecCCCHHHHHHcCCc
Confidence 2333222 225688899997 334466677778887765543222 223348999999987521 112356
Q ss_pred cccccccccEEEecCCChhH----HHHHHHHHHHhhhhcch-hhhhhHHHHHHHHHHHHHHHHhhcCCCCCCccccChhh
Q psy568 552 SHRFLRHVPVIYVDYPGETS----LKQIYGTFSRAMLRLIP-PLRGYADALTNAMVELYLASQEKFTQDMQPHYVYSPRE 626 (1614)
Q Consensus 552 ~~r~~r~f~~i~i~~p~~~~----l~~I~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~hY~F~lRd 626 (1614)
.+.|..++..+.+.-|.-.+ +..+...++..+..... ....+ ........ . .-+|.-|+|+
T Consensus 295 ~~~L~~~l~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~----~~~a~~~L---~-------~~~wpgNvre 360 (445)
T TIGR02915 295 REDLFYRIAEISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGF----TDDALRAL---E-------AHAWPGNVRE 360 (445)
T ss_pred cHHHHHHhccceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCC----CHHHHHHH---H-------hCCCCChHHH
Confidence 66777788877676666433 44444444333211000 00111 11111111 0 1156679999
Q ss_pred HHHHhhhhhc
Q psy568 627 MTRWVRGICE 636 (1614)
Q Consensus 627 l~~v~~~i~~ 636 (1614)
|.++++..+.
T Consensus 361 L~~~i~~a~~ 370 (445)
T TIGR02915 361 LENKVKRAVI 370 (445)
T ss_pred HHHHHHHHHH
Confidence 9999998764
No 177
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.04 E-value=4.3e-05 Score=95.47 Aligned_cols=140 Identities=19% Similarity=0.225 Sum_probs=87.4
Q ss_pred HHHHHHhcCC---CEEEecCCCCchHHHHHHHHhcCCC----------------------CceEEEEcccCCCHHHHHhH
Q psy568 408 LLYTWLAEHK---PLVLCGPPGSGKTMTLLSALRALPD----------------------MEVVSLNFSSATTPELLLKT 462 (1614)
Q Consensus 408 ll~~~l~~~~---~vLL~Gp~GtGKT~lv~~~~~~l~~----------------------~~~~~i~~s~~t~~~~l~~~ 462 (1614)
.+..++..++ .+||+||||||||++++.+++.+.. ..+..++.+.......+...
T Consensus 25 ~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~el~~~~~~~vd~iR~l 104 (504)
T PRK14963 25 VLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVLEIDAASNNSVEDVRDL 104 (504)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceEEecccccCCHHHHHHH
Confidence 3445555553 3599999999999999988876631 11344444434444444332
Q ss_pred hhcccceeecCCccccccccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecC
Q psy568 463 FDHYCEYRKTPNGVILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNP 542 (1614)
Q Consensus 463 ~~~~~~~~~~~~g~~~~p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~ 542 (1614)
.+ ... ..|. .+++-|++|||++.. +...+..|+..++... +.+.||.+++.
T Consensus 105 ~~-~~~---------~~p~-~~~~kVVIIDEad~l------s~~a~naLLk~LEep~------------~~t~~Il~t~~ 155 (504)
T PRK14963 105 RE-KVL---------LAPL-RGGRKVYILDEAHMM------SKSAFNALLKTLEEPP------------EHVIFILATTE 155 (504)
T ss_pred HH-HHh---------hccc-cCCCeEEEEECcccc------CHHHHHHHHHHHHhCC------------CCEEEEEEcCC
Confidence 21 111 1232 245567788999863 3334444555555311 24566666654
Q ss_pred CCCCCCCCCcccccccccEEEecCCChhHHHHHHHHHHH
Q psy568 543 PTDPGRKPLSHRFLRHVPVIYVDYPGETSLKQIYGTFSR 581 (1614)
Q Consensus 543 ~~~~g~~~l~~r~~r~f~~i~i~~p~~~~l~~I~~~~~~ 581 (1614)
+ ..+.+.+.+|+..+.+..|+.+++...+..++.
T Consensus 156 ~-----~kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~~ 189 (504)
T PRK14963 156 P-----EKMPPTILSRTQHFRFRRLTEEEIAGKLRRLLE 189 (504)
T ss_pred h-----hhCChHHhcceEEEEecCCCHHHHHHHHHHHHH
Confidence 3 368888999999999999999999888777654
No 178
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.02 E-value=4.1e-05 Score=84.02 Aligned_cols=136 Identities=15% Similarity=0.141 Sum_probs=84.9
Q ss_pred HHHHhcC---CCEEEecCCCCchHHHHHHHHhcCCCC-----------------------ceEEEEccc-CCCHHHHHhH
Q psy568 410 YTWLAEH---KPLVLCGPPGSGKTMTLLSALRALPDM-----------------------EVVSLNFSS-ATTPELLLKT 462 (1614)
Q Consensus 410 ~~~l~~~---~~vLL~Gp~GtGKT~lv~~~~~~l~~~-----------------------~~~~i~~s~-~t~~~~l~~~ 462 (1614)
..++..+ +.+||+||+|+|||++++.+++.+... .+..+.... ..+.+.+...
T Consensus 5 ~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~~i~~i 84 (188)
T TIGR00678 5 KRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVDQVREL 84 (188)
T ss_pred HHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHHHHHHH
Confidence 3444444 458999999999999999998876321 123333322 2333444333
Q ss_pred hhcccceeecCCccccccccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecC
Q psy568 463 FDHYCEYRKTPNGVILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNP 542 (1614)
Q Consensus 463 ~~~~~~~~~~~~g~~~~p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~ 542 (1614)
++ .+. ..|. .+.+-|++|||++.. +....+.|..+++... ++..||.+++.
T Consensus 85 ~~-~~~---------~~~~-~~~~kviiide~~~l------~~~~~~~Ll~~le~~~------------~~~~~il~~~~ 135 (188)
T TIGR00678 85 VE-FLS---------RTPQ-ESGRRVVIIEDAERM------NEAAANALLKTLEEPP------------PNTLFILITPS 135 (188)
T ss_pred HH-HHc---------cCcc-cCCeEEEEEechhhh------CHHHHHHHHHHhcCCC------------CCeEEEEEECC
Confidence 32 111 1222 345667889999873 3334555666665411 24556666654
Q ss_pred CCCCCCCCCcccccccccEEEecCCChhHHHHHHHHH
Q psy568 543 PTDPGRKPLSHRFLRHVPVIYVDYPGETSLKQIYGTF 579 (1614)
Q Consensus 543 ~~~~g~~~l~~r~~r~f~~i~i~~p~~~~l~~I~~~~ 579 (1614)
+ ..+.+.+.+|+.++.++.|+.+++..++...
T Consensus 136 ~-----~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~ 167 (188)
T TIGR00678 136 P-----EKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ 167 (188)
T ss_pred h-----HhChHHHHhhcEEeeCCCCCHHHHHHHHHHc
Confidence 3 3688899999999999999999998886553
No 179
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.02 E-value=3.9e-05 Score=98.70 Aligned_cols=153 Identities=19% Similarity=0.257 Sum_probs=89.1
Q ss_pred cCCCEEEecCCCCchHHHHHHHHhcC---------CCCceEEEEcccCC-CHHHHHhH-hhcc-----------cce---
Q psy568 415 EHKPLVLCGPPGSGKTMTLLSALRAL---------PDMEVVSLNFSSAT-TPELLLKT-FDHY-----------CEY--- 469 (1614)
Q Consensus 415 ~~~~vLL~Gp~GtGKT~lv~~~~~~l---------~~~~~~~i~~s~~t-~~~~l~~~-~~~~-----------~~~--- 469 (1614)
...+++|+||+|||||++++.+.+.. .+.+++.++++... ++..+... +.+. +..
T Consensus 174 ~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl 253 (615)
T TIGR02903 174 FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGV 253 (615)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCC
Confidence 45679999999999999998776533 13457788876431 22222111 1000 000
Q ss_pred eecCCccccccccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCce------eeCCC-CceE---------eecC
Q psy568 470 RKTPNGVILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGF------YRPAD-KQWV---------SLER 533 (1614)
Q Consensus 470 ~~~~~g~~~~p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~------~~~~~-~~~~---------~~~~ 533 (1614)
.....|.+... ...++|+||++.-. ......|..+++.+.+ |++.+ ..|. ...+
T Consensus 254 ~~~~~g~v~~a----sgGvL~LDEi~~Ld------~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~ 323 (615)
T TIGR02903 254 PEPKTGLVTDA----HGGVLFIDEIGELD------PLLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPAD 323 (615)
T ss_pred CchhcCchhhc----CCCeEEEeccccCC------HHHHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccce
Confidence 00001222111 12489999988733 3355666777766543 22111 1111 1124
Q ss_pred eEEEEeecCCCCCCCCCCcccccccccEEEecCCChhHHHHHHHHHHH
Q psy568 534 IQCVGACNPPTDPGRKPLSHRFLRHVPVIYVDYPGETSLKQIYGTFSR 581 (1614)
Q Consensus 534 ~~~iaa~n~~~~~g~~~l~~r~~r~f~~i~i~~p~~~~l~~I~~~~~~ 581 (1614)
+.+|++++... ..++++|.+||..+.++.++.+++..|+...+.
T Consensus 324 ~VLI~aTt~~~----~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~ 367 (615)
T TIGR02903 324 FVLIGATTRDP----EEINPALRSRCAEVFFEPLTPEDIALIVLNAAE 367 (615)
T ss_pred EEEEEeccccc----cccCHHHHhceeEEEeCCCCHHHHHHHHHHHHH
Confidence 66776655422 268889999999999999999999999887655
No 180
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.02 E-value=3.1e-05 Score=97.73 Aligned_cols=140 Identities=15% Similarity=0.227 Sum_probs=89.7
Q ss_pred HHHHHHhcC---CCEEEecCCCCchHHHHHHHHhcCCCC-----------------------ceEEEEcccCCCHHHHHh
Q psy568 408 LLYTWLAEH---KPLVLCGPPGSGKTMTLLSALRALPDM-----------------------EVVSLNFSSATTPELLLK 461 (1614)
Q Consensus 408 ll~~~l~~~---~~vLL~Gp~GtGKT~lv~~~~~~l~~~-----------------------~~~~i~~s~~t~~~~l~~ 461 (1614)
.+..++..+ +..||+||+|+|||++++.+++.+... .++.++.+..+..+.+..
T Consensus 27 ~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei~~~~~~~vd~ir~ 106 (527)
T PRK14969 27 ALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEVDAASNTQVDAMRE 106 (527)
T ss_pred HHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEeeccccCCHHHHHH
Confidence 445555554 346999999999999999998876321 123344444555555554
Q ss_pred HhhcccceeecCCccccccccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeec
Q psy568 462 TFDHYCEYRKTPNGVILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACN 541 (1614)
Q Consensus 462 ~~~~~~~~~~~~~g~~~~p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n 541 (1614)
.++. + .+.|. .|++-|++|||+++-. ......|...++.. .+.+.||.+++
T Consensus 107 l~~~-~---------~~~p~-~~~~kVvIIDEad~ls------~~a~naLLK~LEep------------p~~~~fIL~t~ 157 (527)
T PRK14969 107 LLDN-A---------QYAPT-RGRFKVYIIDEVHMLS------KSAFNAMLKTLEEP------------PEHVKFILATT 157 (527)
T ss_pred HHHH-H---------hhCcc-cCCceEEEEcCcccCC------HHHHHHHHHHHhCC------------CCCEEEEEEeC
Confidence 4432 1 12343 4667789999999843 33444444555531 12466777665
Q ss_pred CCCCCCCCCCcccccccccEEEecCCChhHHHHHHHHHHH
Q psy568 542 PPTDPGRKPLSHRFLRHVPVIYVDYPGETSLKQIYGTFSR 581 (1614)
Q Consensus 542 ~~~~~g~~~l~~r~~r~f~~i~i~~p~~~~l~~I~~~~~~ 581 (1614)
.+. .+.+.+.+|+..+.+..++.+++...+..++.
T Consensus 158 d~~-----kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~ 192 (527)
T PRK14969 158 DPQ-----KIPVTVLSRCLQFNLKQMPPPLIVSHLQHILE 192 (527)
T ss_pred Chh-----hCchhHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 443 45666899999999999999998877666554
No 181
>PF13173 AAA_14: AAA domain
Probab=98.01 E-value=1.4e-05 Score=81.61 Aligned_cols=122 Identities=20% Similarity=0.235 Sum_probs=80.4
Q ss_pred cCCCEEEecCCCCchHHHHHHHHhcCC-CCceEEEEcccCCCHHHH----HhHhhcccceeecCCccccccccCCceEEE
Q psy568 415 EHKPLVLCGPPGSGKTMTLLSALRALP-DMEVVSLNFSSATTPELL----LKTFDHYCEYRKTPNGVILSPIQLGKWLVL 489 (1614)
Q Consensus 415 ~~~~vLL~Gp~GtGKT~lv~~~~~~l~-~~~~~~i~~s~~t~~~~l----~~~~~~~~~~~~~~~g~~~~p~~~gk~~vl 489 (1614)
+++.++|.||.|||||++++++++.+. ...++.++|......... ...+... .. .+..++
T Consensus 1 n~~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~~~~~~~~~-----------~~----~~~~~i 65 (128)
T PF13173_consen 1 NRKIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPDLLEYFLEL-----------IK----PGKKYI 65 (128)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhhhHHHHHHh-----------hc----cCCcEE
Confidence 467899999999999999999998764 456778888644432211 1111100 00 123667
Q ss_pred EeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCCCcccccccccEEEecCCCh
Q psy568 490 FCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLRHVPVIYVDYPGE 569 (1614)
Q Consensus 490 fiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r~f~~i~i~~p~~ 569 (1614)
||||++.. ......++.+.|.+ +++.+|.|+.... .-.......+..|...+.+.+++-
T Consensus 66 ~iDEiq~~-------~~~~~~lk~l~d~~-------------~~~~ii~tgS~~~-~l~~~~~~~l~gr~~~~~l~Plsf 124 (128)
T PF13173_consen 66 FIDEIQYL-------PDWEDALKFLVDNG-------------PNIKIILTGSSSS-LLSKDIAESLAGRVIEIELYPLSF 124 (128)
T ss_pred EEehhhhh-------ccHHHHHHHHHHhc-------------cCceEEEEccchH-HHhhcccccCCCeEEEEEECCCCH
Confidence 88999983 23567788887753 2456676665443 223466778888888999998886
Q ss_pred hHH
Q psy568 570 TSL 572 (1614)
Q Consensus 570 ~~l 572 (1614)
.|.
T Consensus 125 ~E~ 127 (128)
T PF13173_consen 125 REF 127 (128)
T ss_pred HHh
Confidence 653
No 182
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.01 E-value=4.6e-05 Score=96.18 Aligned_cols=141 Identities=16% Similarity=0.220 Sum_probs=90.1
Q ss_pred HHHHHHHhcCC---CEEEecCCCCchHHHHHHHHhcCCC-------------------------CceEEEEcccCCCHHH
Q psy568 407 SLLYTWLAEHK---PLVLCGPPGSGKTMTLLSALRALPD-------------------------MEVVSLNFSSATTPEL 458 (1614)
Q Consensus 407 ~ll~~~l~~~~---~vLL~Gp~GtGKT~lv~~~~~~l~~-------------------------~~~~~i~~s~~t~~~~ 458 (1614)
..|..++..|+ ..||+||+|||||++++.+++.+.. ..++.++.++....+.
T Consensus 23 ~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~dvieidaas~~gvd~ 102 (584)
T PRK14952 23 EPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSIDVVELDAASHGGVDD 102 (584)
T ss_pred HHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCceEEEeccccccCHHH
Confidence 34556666653 3699999999999999998876531 1122333333333444
Q ss_pred HHhHhhcccceeecCCccccccccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEE
Q psy568 459 LLKTFDHYCEYRKTPNGVILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVG 538 (1614)
Q Consensus 459 l~~~~~~~~~~~~~~~g~~~~p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~ia 538 (1614)
+....+. ..+.|. .+++-|++|||+|+-. ......|+..++.- .+++.||.
T Consensus 103 iRel~~~----------~~~~P~-~~~~KVvIIDEah~Lt------~~A~NALLK~LEEp------------p~~~~fIL 153 (584)
T PRK14952 103 TRELRDR----------AFYAPA-QSRYRIFIVDEAHMVT------TAGFNALLKIVEEP------------PEHLIFIF 153 (584)
T ss_pred HHHHHHH----------HHhhhh-cCCceEEEEECCCcCC------HHHHHHHHHHHhcC------------CCCeEEEE
Confidence 4332221 123343 2455678899999944 33555666666641 12566776
Q ss_pred eecCCCCCCCCCCcccccccccEEEecCCChhHHHHHHHHHHH
Q psy568 539 ACNPPTDPGRKPLSHRFLRHVPVIYVDYPGETSLKQIYGTFSR 581 (1614)
Q Consensus 539 a~n~~~~~g~~~l~~r~~r~f~~i~i~~p~~~~l~~I~~~~~~ 581 (1614)
+++.+. .+.+.+.+|+..+.+..++.+++...+..++.
T Consensus 154 ~tte~~-----kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~ 191 (584)
T PRK14952 154 ATTEPE-----KVLPTIRSRTHHYPFRLLPPRTMRALIARICE 191 (584)
T ss_pred EeCChH-----hhHHHHHHhceEEEeeCCCHHHHHHHHHHHHH
Confidence 665442 68888999999999999999998887766654
No 183
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.01 E-value=1.2e-05 Score=100.73 Aligned_cols=163 Identities=15% Similarity=0.124 Sum_probs=90.9
Q ss_pred ceeeeCcchhhHHHHHHHHHhc----CCCEEEecCCCCchHHHHHHHHhcCC----CCceEEEEcccCCCHHHHHhHhhc
Q psy568 394 DVVVPTLDTVRHESLLYTWLAE----HKPLVLCGPPGSGKTMTLLSALRALP----DMEVVSLNFSSATTPELLLKTFDH 465 (1614)
Q Consensus 394 ~~~vpT~~t~r~~~ll~~~l~~----~~~vLL~Gp~GtGKT~lv~~~~~~l~----~~~~~~i~~s~~t~~~~l~~~~~~ 465 (1614)
+.||...........+..+... ..|++|+||+|+|||+++..+...+. +..++.+++...+ ..+...+..
T Consensus 122 d~fv~g~~n~~a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~--~~~~~~~~~ 199 (450)
T PRK00149 122 DNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFT--NDFVNALRN 199 (450)
T ss_pred cccccCCCcHHHHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHH--HHHHHHHHc
Confidence 4455555444344444444432 26799999999999999988887652 3345566554321 222222211
Q ss_pred ccceeecCCccccccccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCC
Q psy568 466 YCEYRKTPNGVILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTD 545 (1614)
Q Consensus 466 ~~~~~~~~~g~~~~p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~ 545 (1614)
... ..+..-. .+.-+++|||++.........+..+.++..+.+.+. ..++++..+|.
T Consensus 200 ~~~------~~~~~~~--~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~--------------~iiits~~~p~- 256 (450)
T PRK00149 200 NTM------EEFKEKY--RSVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGK--------------QIVLTSDRPPK- 256 (450)
T ss_pred CcH------HHHHHHH--hcCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCC--------------cEEEECCCCHH-
Confidence 000 0000000 112478889999753322111234444445544321 12444444443
Q ss_pred CCCCCCccccccccc---EEEecCCChhHHHHHHHHHHHh
Q psy568 546 PGRKPLSHRFLRHVP---VIYVDYPGETSLKQIYGTFSRA 582 (1614)
Q Consensus 546 ~g~~~l~~r~~r~f~---~i~i~~p~~~~l~~I~~~~~~~ 582 (1614)
.-..+.+|+.+||. ++.+..|+.+++..|+......
T Consensus 257 -~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~ 295 (450)
T PRK00149 257 -ELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEE 295 (450)
T ss_pred -HHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHH
Confidence 22237789999994 7999999999999998877653
No 184
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.00 E-value=3.5e-05 Score=96.73 Aligned_cols=142 Identities=18% Similarity=0.197 Sum_probs=91.5
Q ss_pred HHHHHHHHhcC---CCEEEecCCCCchHHHHHHHHhcCCCC-----------------------ceEEEEcccCCCHHHH
Q psy568 406 ESLLYTWLAEH---KPLVLCGPPGSGKTMTLLSALRALPDM-----------------------EVVSLNFSSATTPELL 459 (1614)
Q Consensus 406 ~~ll~~~l~~~---~~vLL~Gp~GtGKT~lv~~~~~~l~~~-----------------------~~~~i~~s~~t~~~~l 459 (1614)
...|..++..+ +.+||+||+|||||++++.+++.+... .++.++-+.....+.+
T Consensus 25 ~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv~eId~a~~~~Id~i 104 (624)
T PRK14959 25 KAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDVVEIDGASNRGIDDA 104 (624)
T ss_pred HHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCceEEEecccccCHHHH
Confidence 44566666665 457889999999999999888876321 1333443333444444
Q ss_pred HhHhhcccceeecCCccccccccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEe
Q psy568 460 LKTFDHYCEYRKTPNGVILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGA 539 (1614)
Q Consensus 460 ~~~~~~~~~~~~~~~g~~~~p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa 539 (1614)
.... .... +.|. .+++-|++|||+++-. ......|...++.. ...+.||.+
T Consensus 105 R~L~-~~~~---------~~p~-~g~~kVIIIDEad~Lt------~~a~naLLk~LEEP------------~~~~ifILa 155 (624)
T PRK14959 105 KRLK-EAIG---------YAPM-EGRYKVFIIDEAHMLT------REAFNALLKTLEEP------------PARVTFVLA 155 (624)
T ss_pred HHHH-HHHH---------hhhh-cCCceEEEEEChHhCC------HHHHHHHHHHhhcc------------CCCEEEEEe
Confidence 3322 1111 1233 3556788899999843 33455566666641 124667777
Q ss_pred ecCCCCCCCCCCcccccccccEEEecCCChhHHHHHHHHHHH
Q psy568 540 CNPPTDPGRKPLSHRFLRHVPVIYVDYPGETSLKQIYGTFSR 581 (1614)
Q Consensus 540 ~n~~~~~g~~~l~~r~~r~f~~i~i~~p~~~~l~~I~~~~~~ 581 (1614)
++.+. .+.+.+.+|+.++.+..++.+++..++..++.
T Consensus 156 Tt~~~-----kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~ 192 (624)
T PRK14959 156 TTEPH-----KFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLG 192 (624)
T ss_pred cCChh-----hhhHHHHhhhhccccCCCCHHHHHHHHHHHHH
Confidence 66443 56777899999999999999999988877554
No 185
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.00 E-value=0.045 Score=78.27 Aligned_cols=30 Identities=30% Similarity=0.568 Sum_probs=25.7
Q ss_pred cCCccEEEeecCCCChHHHHHHHHHHcCCe
Q psy568 755 QPQGHLLLIGVSGAGKTTLSRFVAFMNGLS 784 (1614)
Q Consensus 755 ~p~gh~LLvG~~GsGKtsl~rlaA~~~~~~ 784 (1614)
...|..+++||.|||||++.-.+.|.+|..
T Consensus 21 f~~~~~~i~G~NGsGKS~ildAi~~~l~~~ 50 (1164)
T TIGR02169 21 FSKGFTVISGPNGSGKSNIGDAILFALGLS 50 (1164)
T ss_pred ecCCeEEEECCCCCCHHHHHHHHHHHhccc
Confidence 346778899999999999999999988754
No 186
>PRK05642 DNA replication initiation factor; Validated
Probab=97.97 E-value=7.4e-05 Score=84.66 Aligned_cols=128 Identities=11% Similarity=0.066 Sum_probs=74.9
Q ss_pred CCEEEecCCCCchHHHHHHHHhcC--CCCceEEEEcccCCCHHHHHhHhhcccceeecCCccccccccCCceEEEEeccC
Q psy568 417 KPLVLCGPPGSGKTMTLLSALRAL--PDMEVVSLNFSSATTPELLLKTFDHYCEYRKTPNGVILSPIQLGKWLVLFCDEI 494 (1614)
Q Consensus 417 ~~vLL~Gp~GtGKT~lv~~~~~~l--~~~~~~~i~~s~~t~~~~l~~~~~~~~~~~~~~~g~~~~p~~~gk~~vlfiDdi 494 (1614)
.+++|+||+|||||.++..+.... .+..++.++...... ...... ...... -+++|||+
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~------~~~~~~-----------~~~~~~--d~LiiDDi 106 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLD------RGPELL-----------DNLEQY--ELVCLDDL 106 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHh------hhHHHH-----------HhhhhC--CEEEEech
Confidence 678999999999999998877543 244556665532221 111000 000011 24567999
Q ss_pred CCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCCCcccccccc---cEEEecCCChhH
Q psy568 495 NLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLRHV---PVIYVDYPGETS 571 (1614)
Q Consensus 495 n~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r~f---~~i~i~~p~~~~ 571 (1614)
+..............++..+.+.| ...++++..+|. .-....+++.+|| .++.+..|+.++
T Consensus 107 ~~~~~~~~~~~~Lf~l~n~~~~~g--------------~~ilits~~~p~--~l~~~~~~L~SRl~~gl~~~l~~~~~e~ 170 (234)
T PRK05642 107 DVIAGKADWEEALFHLFNRLRDSG--------------RRLLLAASKSPR--ELPIKLPDLKSRLTLALVFQMRGLSDED 170 (234)
T ss_pred hhhcCChHHHHHHHHHHHHHHhcC--------------CEEEEeCCCCHH--HcCccCccHHHHHhcCeeeecCCCCHHH
Confidence 974333211223444444443332 123455554543 2334578899999 788899999999
Q ss_pred HHHHHHHH
Q psy568 572 LKQIYGTF 579 (1614)
Q Consensus 572 l~~I~~~~ 579 (1614)
+..|....
T Consensus 171 ~~~il~~k 178 (234)
T PRK05642 171 KLRALQLR 178 (234)
T ss_pred HHHHHHHH
Confidence 99998753
No 187
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.97 E-value=3.9e-05 Score=97.54 Aligned_cols=140 Identities=16% Similarity=0.213 Sum_probs=88.7
Q ss_pred HHHHHHhcC---CCEEEecCCCCchHHHHHHHHhcCCC-----------------------CceEEEEcccCCCHHHHHh
Q psy568 408 LLYTWLAEH---KPLVLCGPPGSGKTMTLLSALRALPD-----------------------MEVVSLNFSSATTPELLLK 461 (1614)
Q Consensus 408 ll~~~l~~~---~~vLL~Gp~GtGKT~lv~~~~~~l~~-----------------------~~~~~i~~s~~t~~~~l~~ 461 (1614)
.+...+..+ +..|++||+|||||++++.+++.+.. ..++.++-++....+.+..
T Consensus 27 ~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g~~~dv~eidaas~~~vd~ir~ 106 (559)
T PRK05563 27 TLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNGSLMDVIEIDAASNNGVDEIRD 106 (559)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCCCCCeEEeeccccCCHHHHHH
Confidence 344555443 45789999999999999988876531 1233344333344444444
Q ss_pred HhhcccceeecCCccccccccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeec
Q psy568 462 TFDHYCEYRKTPNGVILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACN 541 (1614)
Q Consensus 462 ~~~~~~~~~~~~~g~~~~p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n 541 (1614)
..+. ..+.|. .+++-|++|||+++-.. .....|...++.. .+.+.||.+++
T Consensus 107 i~~~----------v~~~p~-~~~~kViIIDE~~~Lt~------~a~naLLKtLEep------------p~~~ifIlatt 157 (559)
T PRK05563 107 IRDK----------VKYAPS-EAKYKVYIIDEVHMLST------GAFNALLKTLEEP------------PAHVIFILATT 157 (559)
T ss_pred HHHH----------HhhCcc-cCCeEEEEEECcccCCH------HHHHHHHHHhcCC------------CCCeEEEEEeC
Confidence 4321 123343 46677888999998433 2333444444431 12466666655
Q ss_pred CCCCCCCCCCcccccccccEEEecCCChhHHHHHHHHHHH
Q psy568 542 PPTDPGRKPLSHRFLRHVPVIYVDYPGETSLKQIYGTFSR 581 (1614)
Q Consensus 542 ~~~~~g~~~l~~r~~r~f~~i~i~~p~~~~l~~I~~~~~~ 581 (1614)
.+ ..+++.+.+|+..+.+..|+.+++...+..++.
T Consensus 158 ~~-----~ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~ 192 (559)
T PRK05563 158 EP-----HKIPATILSRCQRFDFKRISVEDIVERLKYILD 192 (559)
T ss_pred Ch-----hhCcHHHHhHheEEecCCCCHHHHHHHHHHHHH
Confidence 43 358888999999999999999999888776654
No 188
>KOG0651|consensus
Probab=97.97 E-value=8.7e-06 Score=89.93 Aligned_cols=136 Identities=23% Similarity=0.348 Sum_probs=82.7
Q ss_pred HHhcCCCEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCC------HHHHHhHhhcccceeecCCccccccccCCc
Q psy568 412 WLAEHKPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATT------PELLLKTFDHYCEYRKTPNGVILSPIQLGK 485 (1614)
Q Consensus 412 ~l~~~~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~------~~~l~~~~~~~~~~~~~~~g~~~~p~~~gk 485 (1614)
-++..+.++|+||||+|||-+++.+++.+ +.+++.+.-|+-.+ +..+...+. .+. .-.
T Consensus 162 gIk~Pkg~ll~GppGtGKTlla~~Vaa~m-g~nfl~v~ss~lv~kyiGEsaRlIRemf~--------------yA~-~~~ 225 (388)
T KOG0651|consen 162 GIKPPKGLLLYGPPGTGKTLLARAVAATM-GVNFLKVVSSALVDKYIGESARLIRDMFR--------------YAR-EVI 225 (388)
T ss_pred CCCCCceeEEeCCCCCchhHHHHHHHHhc-CCceEEeeHhhhhhhhcccHHHHHHHHHH--------------HHh-hhC
Confidence 45566789999999999999999999988 66666665543322 111221111 111 233
Q ss_pred eEEEEeccCCCCCcccc--Cc---ccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCCCcccccc--c
Q psy568 486 WLVLFCDEINLPDMDKY--AT---QRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLR--H 558 (1614)
Q Consensus 486 ~~vlfiDdin~p~~d~~--g~---q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r--~ 558 (1614)
+||+|+|||+-..-..+ |+ +.+...|-.+++ +|+. +..+..+.+|+|+|.|+ .|+++|+| |
T Consensus 226 pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLln--qmdg-----fd~l~rVk~ImatNrpd-----tLdpaLlRpGR 293 (388)
T KOG0651|consen 226 PCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLN--QMDG-----FDTLHRVKTIMATNRPD-----TLDPALLRPGR 293 (388)
T ss_pred ceEEeehhhhhhccEEeccccchhHHHHHHHHHHHH--hhcc-----chhcccccEEEecCCcc-----ccchhhcCCcc
Confidence 49999999995322111 22 333333333333 2332 22345688899999987 69998886 2
Q ss_pred c-cEEEecCCChhHHHHH
Q psy568 559 V-PVIYVDYPGETSLKQI 575 (1614)
Q Consensus 559 f-~~i~i~~p~~~~l~~I 575 (1614)
. ..+.+|-|+......|
T Consensus 294 ldrk~~iPlpne~~r~~I 311 (388)
T KOG0651|consen 294 LDRKVEIPLPNEQARLGI 311 (388)
T ss_pred ccceeccCCcchhhceee
Confidence 2 2567787776655554
No 189
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=97.96 E-value=1.3e-05 Score=95.35 Aligned_cols=154 Identities=19% Similarity=0.225 Sum_probs=82.7
Q ss_pred hcCCCEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCCHHHHHhHhhc---ccceeecCCccccccccCCceEEEE
Q psy568 414 AEHKPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTPELLLKTFDH---YCEYRKTPNGVILSPIQLGKWLVLF 490 (1614)
Q Consensus 414 ~~~~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~~~~l~~~~~~---~~~~~~~~~g~~~~p~~~gk~~vlf 490 (1614)
..+.|+||+|.||+|||.+++.+.+.. ...+..+....+... +...+.. ..++. ...|.++-+ ...|++
T Consensus 55 r~~ihiLlvGdpg~gKS~ll~~~~~~~--pr~v~~~g~~~s~~g-Lta~~~~d~~~~~~~-leaGalvla----d~Gicc 126 (331)
T PF00493_consen 55 RGNIHILLVGDPGTGKSQLLKYVAKLA--PRSVYTSGKGSSAAG-LTASVSRDPVTGEWV-LEAGALVLA----DGGICC 126 (331)
T ss_dssp --S--EEEECSCHHCHHHHHHCCCCT---SSEEEEECCGSTCCC-CCEEECCCGGTSSEC-EEE-HHHHC----TTSEEE
T ss_pred ccccceeeccchhhhHHHHHHHHHhhC--CceEEECCCCcccCC-ccceeccccccceeE-EeCCchhcc----cCceee
Confidence 356799999999999999886443322 223344443333321 1111110 00010 012443333 235677
Q ss_pred eccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEee-cCeEEEEeecCCCCCCC----------CCCcccccccc
Q psy568 491 CDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSL-ERIQCVGACNPPTDPGR----------KPLSHRFLRHV 559 (1614)
Q Consensus 491 iDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~-~~~~~iaa~n~~~~~g~----------~~l~~r~~r~f 559 (1614)
|||++.... .....|...|+++.+...+.+-...+ .+..++||+||.. |+ -.+++.+++||
T Consensus 127 IDe~dk~~~------~~~~~l~eaMEqq~isi~kagi~~~l~ar~svlaa~NP~~--g~~~~~~~~~~ni~l~~~LLSRF 198 (331)
T PF00493_consen 127 IDEFDKMKE------DDRDALHEAMEQQTISIAKAGIVTTLNARCSVLAAANPKF--GRYDPNKSLSENINLPPPLLSRF 198 (331)
T ss_dssp ECTTTT--C------HHHHHHHHHHHCSCEEECTSSSEEEEE---EEEEEE--TT----S-TTS-CGCCT-S-CCCHCC-
T ss_pred ecccccccc------hHHHHHHHHHHcCeeccchhhhcccccchhhhHHHHhhhh--hhcchhhhhHHhcccchhhHhhc
Confidence 799998433 35788899999999888766644444 4899999999985 33 25889999999
Q ss_pred cEEEe--cCCChhHHHHHHHHHHHhh
Q psy568 560 PVIYV--DYPGETSLKQIYGTFSRAM 583 (1614)
Q Consensus 560 ~~i~i--~~p~~~~l~~I~~~~~~~~ 583 (1614)
-.|.+ +.|+.+.=..|...++..+
T Consensus 199 DLif~l~D~~d~~~D~~la~~il~~~ 224 (331)
T PF00493_consen 199 DLIFLLRDKPDEEEDERLAEHILDSH 224 (331)
T ss_dssp SEEECC--TTT-HHHHHHHHHHHTTT
T ss_pred CEEEEeccccccccccccceEEEecc
Confidence 97753 6677666566655555544
No 190
>PRK09087 hypothetical protein; Validated
Probab=97.96 E-value=0.00012 Score=82.25 Aligned_cols=145 Identities=15% Similarity=0.155 Sum_probs=82.3
Q ss_pred cceeeeCcchhhHHHHHHHHHh-cCCCEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCCHHHHHhHhhcccceee
Q psy568 393 SDVVVPTLDTVRHESLLYTWLA-EHKPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTPELLLKTFDHYCEYRK 471 (1614)
Q Consensus 393 ~~~~vpT~~t~r~~~ll~~~l~-~~~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~~~~l~~~~~~~~~~~~ 471 (1614)
.+.||++.........+..+.. .+.+++|+||+|||||++++.+.+.. + ...++.. ..+.+.+ .
T Consensus 20 ~~~Fi~~~~N~~a~~~l~~~~~~~~~~l~l~G~~GsGKThLl~~~~~~~-~--~~~i~~~-~~~~~~~-~---------- 84 (226)
T PRK09087 20 RDDLLVTESNRAAVSLVDHWPNWPSPVVVLAGPVGSGKTHLASIWREKS-D--ALLIHPN-EIGSDAA-N---------- 84 (226)
T ss_pred hhceeecCchHHHHHHHHhcccCCCCeEEEECCCCCCHHHHHHHHHHhc-C--CEEecHH-HcchHHH-H----------
Confidence 3456665433223333443332 24459999999999999998777643 2 2222221 1111111 0
Q ss_pred cCCccccccccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCCC
Q psy568 472 TPNGVILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPL 551 (1614)
Q Consensus 472 ~~~g~~~~p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l 551 (1614)
... + -+++|||++....+ ....++++..+.+.|. ..++++..+|. .-...
T Consensus 85 --------~~~-~--~~l~iDDi~~~~~~---~~~lf~l~n~~~~~g~--------------~ilits~~~p~--~~~~~ 134 (226)
T PRK09087 85 --------AAA-E--GPVLIEDIDAGGFD---ETGLFHLINSVRQAGT--------------SLLMTSRLWPS--SWNVK 134 (226)
T ss_pred --------hhh-c--CeEEEECCCCCCCC---HHHHHHHHHHHHhCCC--------------eEEEECCCChH--Hhccc
Confidence 000 1 24556999974322 1224555555554332 23444544443 22334
Q ss_pred cccccccc---cEEEecCCChhHHHHHHHHHHHh
Q psy568 552 SHRFLRHV---PVIYVDYPGETSLKQIYGTFSRA 582 (1614)
Q Consensus 552 ~~r~~r~f---~~i~i~~p~~~~l~~I~~~~~~~ 582 (1614)
.+++.+|| .++.+..|+.+++..|+...+..
T Consensus 135 ~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~ 168 (226)
T PRK09087 135 LPDLKSRLKAATVVEIGEPDDALLSQVIFKLFAD 168 (226)
T ss_pred cccHHHHHhCCceeecCCCCHHHHHHHHHHHHHH
Confidence 78899999 79999999999999998887664
No 191
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.96 E-value=8.3e-05 Score=92.43 Aligned_cols=140 Identities=17% Similarity=0.226 Sum_probs=91.2
Q ss_pred HHHHHHhcCC---CEEEecCCCCchHHHHHHHHhcCCC---------------------C--ceEEEEcccCCCHHHHHh
Q psy568 408 LLYTWLAEHK---PLVLCGPPGSGKTMTLLSALRALPD---------------------M--EVVSLNFSSATTPELLLK 461 (1614)
Q Consensus 408 ll~~~l~~~~---~vLL~Gp~GtGKT~lv~~~~~~l~~---------------------~--~~~~i~~s~~t~~~~l~~ 461 (1614)
.+..++..|+ ..|++||+|+|||++++.+++.+.. . .++.++-++....+++..
T Consensus 25 ~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~eldaas~~gId~IRe 104 (535)
T PRK08451 25 TLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIEMDAASNRGIDDIRE 104 (535)
T ss_pred HHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEEeccccccCHHHHHH
Confidence 4445555552 2489999999999999988876621 1 123333333334556655
Q ss_pred HhhcccceeecCCccccccccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeec
Q psy568 462 TFDHYCEYRKTPNGVILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACN 541 (1614)
Q Consensus 462 ~~~~~~~~~~~~~g~~~~p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n 541 (1614)
.++.. .+.|. .|++-|++|||+++- +....+.|+..++.- .+.+.||.+++
T Consensus 105 lie~~----------~~~P~-~~~~KVvIIDEad~L------t~~A~NALLK~LEEp------------p~~t~FIL~tt 155 (535)
T PRK08451 105 LIEQT----------KYKPS-MARFKIFIIDEVHML------TKEAFNALLKTLEEP------------PSYVKFILATT 155 (535)
T ss_pred HHHHH----------hhCcc-cCCeEEEEEECcccC------CHHHHHHHHHHHhhc------------CCceEEEEEEC
Confidence 55321 12332 355677889999984 344566667777641 12466677765
Q ss_pred CCCCCCCCCCcccccccccEEEecCCChhHHHHHHHHHHH
Q psy568 542 PPTDPGRKPLSHRFLRHVPVIYVDYPGETSLKQIYGTFSR 581 (1614)
Q Consensus 542 ~~~~~g~~~l~~r~~r~f~~i~i~~p~~~~l~~I~~~~~~ 581 (1614)
.+ ..+++.+.+|+..+.+..++.+++......++.
T Consensus 156 d~-----~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~ 190 (535)
T PRK08451 156 DP-----LKLPATILSRTQHFRFKQIPQNSIISHLKTILE 190 (535)
T ss_pred Ch-----hhCchHHHhhceeEEcCCCCHHHHHHHHHHHHH
Confidence 44 368888999999999999999998888766554
No 192
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.95 E-value=5.6e-05 Score=99.19 Aligned_cols=140 Identities=15% Similarity=0.194 Sum_probs=90.7
Q ss_pred HHHHHHhcC---CCEEEecCCCCchHHHHHHHHhcCCC-------------------------CceEEEEcccCCCHHHH
Q psy568 408 LLYTWLAEH---KPLVLCGPPGSGKTMTLLSALRALPD-------------------------MEVVSLNFSSATTPELL 459 (1614)
Q Consensus 408 ll~~~l~~~---~~vLL~Gp~GtGKT~lv~~~~~~l~~-------------------------~~~~~i~~s~~t~~~~l 459 (1614)
.|..++..+ +..||+||+|||||++++.+++.+.. ..++.++-.+....+++
T Consensus 26 ~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~dv~eidaas~~~Vd~i 105 (824)
T PRK07764 26 PLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLDVTEIDAASHGGVDDA 105 (824)
T ss_pred HHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCcEEEecccccCCHHHH
Confidence 355555553 34799999999999999998887631 11233333333344444
Q ss_pred HhHhhcccceeecCCccccccccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEe
Q psy568 460 LKTFDHYCEYRKTPNGVILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGA 539 (1614)
Q Consensus 460 ~~~~~~~~~~~~~~~g~~~~p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa 539 (1614)
....+. ..+.|. .+++-|+||||+++-.. .....|+.+++.-. ..+.||.+
T Consensus 106 R~l~~~----------~~~~p~-~~~~KV~IIDEad~lt~------~a~NaLLK~LEEpP------------~~~~fIl~ 156 (824)
T PRK07764 106 RELRER----------AFFAPA-ESRYKIFIIDEAHMVTP------QGFNALLKIVEEPP------------EHLKFIFA 156 (824)
T ss_pred HHHHHH----------HHhchh-cCCceEEEEechhhcCH------HHHHHHHHHHhCCC------------CCeEEEEE
Confidence 433221 123343 35667788999999443 45566667776411 24666766
Q ss_pred ecCCCCCCCCCCcccccccccEEEecCCChhHHHHHHHHHHH
Q psy568 540 CNPPTDPGRKPLSHRFLRHVPVIYVDYPGETSLKQIYGTFSR 581 (1614)
Q Consensus 540 ~n~~~~~g~~~l~~r~~r~f~~i~i~~p~~~~l~~I~~~~~~ 581 (1614)
++.+. .|.+.+.+|+.++.+..++.+++...+..++.
T Consensus 157 tt~~~-----kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~ 193 (824)
T PRK07764 157 TTEPD-----KVIGTIRSRTHHYPFRLVPPEVMRGYLERICA 193 (824)
T ss_pred eCChh-----hhhHHHHhheeEEEeeCCCHHHHHHHHHHHHH
Confidence 65443 47778999999999999999999888776654
No 193
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.95 E-value=0.065 Score=75.26 Aligned_cols=31 Identities=23% Similarity=0.477 Sum_probs=27.5
Q ss_pred ccCCccEEEeecCCCChHHHHHHHHHHcCCe
Q psy568 754 RQPQGHLLLIGVSGAGKTTLSRFVAFMNGLS 784 (1614)
Q Consensus 754 ~~p~gh~LLvG~~GsGKtsl~rlaA~~~~~~ 784 (1614)
..+.|.-..|||.||||+.++-.++|.+|-.
T Consensus 21 ~f~~~~t~IvGPNGSGKSNI~DAi~fVLG~~ 51 (1163)
T COG1196 21 NFSPGFTAIVGPNGSGKSNIVDAIRFVLGEQ 51 (1163)
T ss_pred ecCCCCeEEECCCCCchHHHHHHHHHHhCcc
Confidence 4567888999999999999999999999855
No 194
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.95 E-value=5.7e-05 Score=96.25 Aligned_cols=141 Identities=14% Similarity=0.191 Sum_probs=88.1
Q ss_pred HHHHHHHhcC---CCEEEecCCCCchHHHHHHHHhcCCCCc--------------------eEEEEcccCCCHHHHHhHh
Q psy568 407 SLLYTWLAEH---KPLVLCGPPGSGKTMTLLSALRALPDME--------------------VVSLNFSSATTPELLLKTF 463 (1614)
Q Consensus 407 ~ll~~~l~~~---~~vLL~Gp~GtGKT~lv~~~~~~l~~~~--------------------~~~i~~s~~t~~~~l~~~~ 463 (1614)
..+..++..| +..|++||+|+|||++++.+++.+.... ++.++-.+....+.+...+
T Consensus 28 ~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvieidaasn~~vd~IReLi 107 (725)
T PRK07133 28 QTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIEMDAASNNGVDEIRELI 107 (725)
T ss_pred HHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEEEeccccCCHHHHHHHH
Confidence 3455566554 3469999999999999999987663210 1112222223334443333
Q ss_pred hcccceeecCCccccccccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCC
Q psy568 464 DHYCEYRKTPNGVILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPP 543 (1614)
Q Consensus 464 ~~~~~~~~~~~g~~~~p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~ 543 (1614)
+. + .+.|. .|++-|++|||+++-. ......|...++.- .+.+.||.+++.+
T Consensus 108 e~-~---------~~~P~-~g~~KV~IIDEa~~LT------~~A~NALLKtLEEP------------P~~tifILaTte~ 158 (725)
T PRK07133 108 EN-V---------KNLPT-QSKYKIYIIDEVHMLS------KSAFNALLKTLEEP------------PKHVIFILATTEV 158 (725)
T ss_pred HH-H---------Hhchh-cCCCEEEEEEChhhCC------HHHHHHHHHHhhcC------------CCceEEEEEcCCh
Confidence 21 1 12233 3566788899999843 33455566666641 1245666666543
Q ss_pred CCCCCCCCcccccccccEEEecCCChhHHHHHHHHHHH
Q psy568 544 TDPGRKPLSHRFLRHVPVIYVDYPGETSLKQIYGTFSR 581 (1614)
Q Consensus 544 ~~~g~~~l~~r~~r~f~~i~i~~p~~~~l~~I~~~~~~ 581 (1614)
..+++.+.+|+.++.+..++.+++...+..++.
T Consensus 159 -----~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~ 191 (725)
T PRK07133 159 -----HKIPLTILSRVQRFNFRRISEDEIVSRLEFILE 191 (725)
T ss_pred -----hhhhHHHHhhceeEEccCCCHHHHHHHHHHHHH
Confidence 268888999999999999999999888776544
No 195
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=97.94 E-value=9.8e-05 Score=93.44 Aligned_cols=212 Identities=12% Similarity=0.086 Sum_probs=119.1
Q ss_pred CcchhhHHHHHHHHHhcCCCEEEecCCCCchHHHHHHHHhcC--CCCceEEEEcccCCCHHHHHhHhhcccc-----eee
Q psy568 399 TLDTVRHESLLYTWLAEHKPLVLCGPPGSGKTMTLLSALRAL--PDMEVVSLNFSSATTPELLLKTFDHYCE-----YRK 471 (1614)
Q Consensus 399 T~~t~r~~~ll~~~l~~~~~vLL~Gp~GtGKT~lv~~~~~~l--~~~~~~~i~~s~~t~~~~l~~~~~~~~~-----~~~ 471 (1614)
++........+..+...+.|+++.|++||||+++++.+.... .+.+++.++|..... ..+...+-+.-. ...
T Consensus 149 S~~~~~~~~~~~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~-~~~~~~lfg~~~~~~~~~~~ 227 (457)
T PRK11361 149 SPAMMDICKDTAKIALSQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPE-SLLESELFGHEKGAFTGAQT 227 (457)
T ss_pred cHHHhHHHHHHHHHcCCCcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCH-HHHHHHhcCCCCCCCCCCCC
Confidence 344445566677777889999999999999999887776543 346789999987643 333333211100 000
Q ss_pred cCCccccccccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCC--CCCC
Q psy568 472 TPNGVILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTD--PGRK 549 (1614)
Q Consensus 472 ~~~g~~~~p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~--~g~~ 549 (1614)
...|.+..+ ...++||||++... .....-|..+++.+.+... ++......++++|+|++.+-. ....
T Consensus 228 ~~~g~~~~a----~~gtl~ld~i~~l~------~~~q~~L~~~l~~~~~~~~-~~~~~~~~~~rii~~t~~~l~~~~~~g 296 (457)
T PRK11361 228 LRQGLFERA----NEGTLLLDEIGEMP------LVLQAKLLRILQEREFERI-GGHQTIKVDIRIIAATNRDLQAMVKEG 296 (457)
T ss_pred CCCCceEEC----CCCEEEEechhhCC------HHHHHHHHHHHhcCcEEeC-CCCceeeeceEEEEeCCCCHHHHHHcC
Confidence 012333322 12568889999833 3356667778887765432 222223347999999987521 0122
Q ss_pred CCcccccccccEEEecCCChh----HHHHHHHHHHHhhhhcch-hhhhhHHHHHHHHHHHHHHHHhhcCCCCCCccccCh
Q psy568 550 PLSHRFLRHVPVIYVDYPGET----SLKQIYGTFSRAMLRLIP-PLRGYADALTNAMVELYLASQEKFTQDMQPHYVYSP 624 (1614)
Q Consensus 550 ~l~~r~~r~f~~i~i~~p~~~----~l~~I~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~hY~F~l 624 (1614)
.+.+.+..++..+.+.-|.-. ++..+...++..+..... .+..+ .....+.. . .-+|.-|+
T Consensus 297 ~~~~~l~~~l~~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~----~~~a~~~L----~------~~~wpgNv 362 (457)
T PRK11361 297 TFREDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDI----DPMAMSLL----T------AWSWPGNI 362 (457)
T ss_pred CchHHHHHHhccceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCc----CHHHHHHH----H------cCCCCCcH
Confidence 455667777777666666543 344443333332211000 00111 11111111 0 11567799
Q ss_pred hhHHHHhhhhhc
Q psy568 625 REMTRWVRGICE 636 (1614)
Q Consensus 625 Rdl~~v~~~i~~ 636 (1614)
|+|.++++..+.
T Consensus 363 ~eL~~~~~~~~~ 374 (457)
T PRK11361 363 RELSNVIERAVV 374 (457)
T ss_pred HHHHHHHHHHHH
Confidence 999999998764
No 196
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.94 E-value=3.6e-05 Score=95.31 Aligned_cols=164 Identities=13% Similarity=0.090 Sum_probs=87.5
Q ss_pred ceeeeCcchhhHHHHHHHHHhc----CCCEEEecCCCCchHHHHHHHHhcC----CCCceEEEEcccCCCHHHHHhHhhc
Q psy568 394 DVVVPTLDTVRHESLLYTWLAE----HKPLVLCGPPGSGKTMTLLSALRAL----PDMEVVSLNFSSATTPELLLKTFDH 465 (1614)
Q Consensus 394 ~~~vpT~~t~r~~~ll~~~l~~----~~~vLL~Gp~GtGKT~lv~~~~~~l----~~~~~~~i~~s~~t~~~~l~~~~~~ 465 (1614)
+.||+.+...........+... ..|++|+|++|+|||.++..+...+ ++..++.++.. .+...+..
T Consensus 115 dnFv~g~~n~~A~~aa~~~a~~~~~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~------~f~~~~~~ 188 (450)
T PRK14087 115 ENFVIGSSNEQAFIAVQTVSKNPGISYNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGD------EFARKAVD 188 (450)
T ss_pred hcccCCCcHHHHHHHHHHHHhCcCcccCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHH------HHHHHHHH
Confidence 4456555433223333333332 2589999999999999998887643 23445545432 22222211
Q ss_pred ccceeecCCccccccc-cCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCC
Q psy568 466 YCEYRKTPNGVILSPI-QLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPT 544 (1614)
Q Consensus 466 ~~~~~~~~~g~~~~p~-~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~ 544 (1614)
.+.... +.+-.-. .-...-+++|||++..... ....+.|..+++.. ++.+ -++|.|++.+.
T Consensus 189 ~l~~~~---~~~~~~~~~~~~~dvLiIDDiq~l~~k----~~~~e~lf~l~N~~--~~~~---------k~iIltsd~~P 250 (450)
T PRK14087 189 ILQKTH---KEIEQFKNEICQNDVLIIDDVQFLSYK----EKTNEIFFTIFNNF--IEND---------KQLFFSSDKSP 250 (450)
T ss_pred HHHHhh---hHHHHHHHHhccCCEEEEeccccccCC----HHHHHHHHHHHHHH--HHcC---------CcEEEECCCCH
Confidence 110000 0000000 0011236777999874332 22344444444321 2211 12355544332
Q ss_pred CCCCCCCccccccccc---EEEecCCChhHHHHHHHHHHHh
Q psy568 545 DPGRKPLSHRFLRHVP---VIYVDYPGETSLKQIYGTFSRA 582 (1614)
Q Consensus 545 ~~g~~~l~~r~~r~f~---~i~i~~p~~~~l~~I~~~~~~~ 582 (1614)
.-...+.+|+.+||. ++.+..|+.+++..|+...+..
T Consensus 251 -~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~ 290 (450)
T PRK14087 251 -ELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEIKN 290 (450)
T ss_pred -HHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHHHHh
Confidence 133467899999997 7889999999999998876653
No 197
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.94 E-value=5.2e-05 Score=88.56 Aligned_cols=172 Identities=17% Similarity=0.195 Sum_probs=100.6
Q ss_pred ceeeeCcchhhHHHHHHHHHhcCC-CEEEecCCCCchHHHHHHHHhcCCCCceEE-EEcccCCCHHHHHhHhhcccceee
Q psy568 394 DVVVPTLDTVRHESLLYTWLAEHK-PLVLCGPPGSGKTMTLLSALRALPDMEVVS-LNFSSATTPELLLKTFDHYCEYRK 471 (1614)
Q Consensus 394 ~~~vpT~~t~r~~~ll~~~l~~~~-~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~-i~~s~~t~~~~l~~~~~~~~~~~~ 471 (1614)
..+.++....+....+...+..+. .++|+||+|+|||++++.+++.+....+.. .-++...++..+...+...+....
T Consensus 20 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~ 99 (269)
T TIGR03015 20 DFFYPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLET 99 (269)
T ss_pred HHhCCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCC
Confidence 467888888888888887777665 588999999999999999998775333322 223344556555555433222111
Q ss_pred c-C-Ccccc--------ccccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeec
Q psy568 472 T-P-NGVIL--------SPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACN 541 (1614)
Q Consensus 472 ~-~-~g~~~--------~p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n 541 (1614)
. . +.... .-...|+..+++|||++.. +...++.|+.+.+... ... ..+.++.+..
T Consensus 100 ~~~~~~~~~~~l~~~l~~~~~~~~~~vliiDe~~~l------~~~~~~~l~~l~~~~~----~~~-----~~~~vvl~g~ 164 (269)
T TIGR03015 100 EGRDKAALLRELEDFLIEQFAAGKRALLVVDEAQNL------TPELLEELRMLSNFQT----DNA-----KLLQIFLVGQ 164 (269)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCCeEEEEECcccC------CHHHHHHHHHHhCccc----CCC-----CeEEEEEcCC
Confidence 0 0 00000 0112466789999999984 3346778887765321 111 1244455544
Q ss_pred CCCCCC--CCCCcccccccc-cEEEecCCChhHHHHHHHHHHH
Q psy568 542 PPTDPG--RKPLSHRFLRHV-PVIYVDYPGETSLKQIYGTFSR 581 (1614)
Q Consensus 542 ~~~~~g--~~~l~~r~~r~f-~~i~i~~p~~~~l~~I~~~~~~ 581 (1614)
|.- .. ..+-..++.+|+ ..+.++..+.+++...+...+.
T Consensus 165 ~~~-~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~~~~l~~~l~ 206 (269)
T TIGR03015 165 PEF-RETLQSPQLQQLRQRIIASCHLGPLDREETREYIEHRLE 206 (269)
T ss_pred HHH-HHHHcCchhHHHHhheeeeeeCCCCCHHHHHHHHHHHHH
Confidence 321 00 011122455554 3678899999998888776554
No 198
>KOG1051|consensus
Probab=97.92 E-value=1.7e-05 Score=101.84 Aligned_cols=117 Identities=18% Similarity=0.231 Sum_probs=90.4
Q ss_pred CEEEecCCCCchHHHHHHHHhcCCC--CceEEEEcccCCCHHHHHhHhhcccceeecC-CccccccccCCceEEEEeccC
Q psy568 418 PLVLCGPPGSGKTMTLLSALRALPD--MEVVSLNFSSATTPELLLKTFDHYCEYRKTP-NGVILSPIQLGKWLVLFCDEI 494 (1614)
Q Consensus 418 ~vLL~Gp~GtGKT~lv~~~~~~l~~--~~~~~i~~s~~t~~~~l~~~~~~~~~~~~~~-~g~~~~p~~~gk~~vlfiDdi 494 (1614)
.+|+.||+|+|||-+++.++..+-+ ..++.+++|+... +-+.+.+...++... .|.+..+.+.....|+++|||
T Consensus 593 wflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~e---vskligsp~gyvG~e~gg~LteavrrrP~sVVLfdeI 669 (898)
T KOG1051|consen 593 WFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQE---VSKLIGSPPGYVGKEEGGQLTEAVKRRPYSVVLFEEI 669 (898)
T ss_pred EEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhh---hhhccCCCcccccchhHHHHHHHHhcCCceEEEEech
Confidence 4799999999999999999987744 4588999997655 333334433333322 346667777677899999999
Q ss_pred CCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCC
Q psy568 495 NLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPT 544 (1614)
Q Consensus 495 n~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~ 544 (1614)
.. +...++..|.|++|.|.+.|. .+..+...|+.||.|+|-..
T Consensus 670 Ek------Ah~~v~n~llq~lD~GrltDs-~Gr~Vd~kN~I~IMTsn~~~ 712 (898)
T KOG1051|consen 670 EK------AHPDVLNILLQLLDRGRLTDS-HGREVDFKNAIFIMTSNVGS 712 (898)
T ss_pred hh------cCHHHHHHHHHHHhcCccccC-CCcEeeccceEEEEecccch
Confidence 99 666699999999999998884 56778889999999998643
No 199
>PRK15115 response regulator GlrR; Provisional
Probab=97.91 E-value=0.00014 Score=91.47 Aligned_cols=209 Identities=11% Similarity=0.124 Sum_probs=119.2
Q ss_pred hhhHHHHHHHHHhcCCCEEEecCCCCchHHHHHHHHhcC--CCCceEEEEcccCCCHHHHHhHhhcccc-----eeecCC
Q psy568 402 TVRHESLLYTWLAEHKPLVLCGPPGSGKTMTLLSALRAL--PDMEVVSLNFSSATTPELLLKTFDHYCE-----YRKTPN 474 (1614)
Q Consensus 402 t~r~~~ll~~~l~~~~~vLL~Gp~GtGKT~lv~~~~~~l--~~~~~~~i~~s~~t~~~~l~~~~~~~~~-----~~~~~~ 474 (1614)
..+....+..+...+.+|++.|++|||||++++.+.... .+.+++.++|..... ..+...+-+... ......
T Consensus 143 ~~~~~~~~~~~a~~~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~-~~~~~~lfg~~~~~~~~~~~~~~ 221 (444)
T PRK15115 143 MLRLLEQARMVAQSDVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPE-QLLESELFGHARGAFTGAVSNRE 221 (444)
T ss_pred HHHHHHHHHhhccCCCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCH-HHHHHHhcCCCcCCCCCCccCCC
Confidence 344455555666778999999999999999887766543 346789999987643 333222211100 000112
Q ss_pred ccccccccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCC--CCCCCCCc
Q psy568 475 GVILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPT--DPGRKPLS 552 (1614)
Q Consensus 475 g~~~~p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~--~~g~~~l~ 552 (1614)
|.+..+ ....+||||++.- +....+.|..+++.+.+... +.......++++|+|++.+- ...+..+.
T Consensus 222 g~~~~a----~~gtl~l~~i~~l------~~~~q~~L~~~l~~~~~~~~-g~~~~~~~~~rii~~~~~~l~~~~~~~~f~ 290 (444)
T PRK15115 222 GLFQAA----EGGTLFLDEIGDM------PAPLQVKLLRVLQERKVRPL-GSNRDIDIDVRIISATHRDLPKAMARGEFR 290 (444)
T ss_pred CcEEEC----CCCEEEEEccccC------CHHHHHHHHHHHhhCCEEeC-CCCceeeeeEEEEEeCCCCHHHHHHcCCcc
Confidence 333222 1247888999973 33456667777887766432 22223334899999987642 01233567
Q ss_pred ccccccccEEEecCCChh----HHHHHHHHHHHhhhhcch-hhhhhHHHHHHHHHHHHHHHHhhcCCCCCCccccChhhH
Q psy568 553 HRFLRHVPVIYVDYPGET----SLKQIYGTFSRAMLRLIP-PLRGYADALTNAMVELYLASQEKFTQDMQPHYVYSPREM 627 (1614)
Q Consensus 553 ~r~~r~f~~i~i~~p~~~----~l~~I~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~hY~F~lRdl 627 (1614)
+.+..+++.+.+.-|.-. ++..+...++..+..... .+..+.......+. .-+|.-|+|+|
T Consensus 291 ~~l~~~l~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~--------------~~~WpgNvreL 356 (444)
T PRK15115 291 EDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLM--------------TASWPGNVRQL 356 (444)
T ss_pred HHHHHhhceeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHH--------------hCCCCChHHHH
Confidence 777888887777777643 444454444443211000 01111111111111 11566799999
Q ss_pred HHHhhhhhc
Q psy568 628 TRWVRGICE 636 (1614)
Q Consensus 628 ~~v~~~i~~ 636 (1614)
.++++.++.
T Consensus 357 ~~~i~~~~~ 365 (444)
T PRK15115 357 VNVIEQCVA 365 (444)
T ss_pred HHHHHHHHH
Confidence 999998765
No 200
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=97.90 E-value=7e-05 Score=90.61 Aligned_cols=127 Identities=13% Similarity=0.219 Sum_probs=76.8
Q ss_pred CCEEEecCCCCchHHHHHHHHhcCCCC---------------------c-eEEEEcc-cCCCHHHHHhHhhcccceeecC
Q psy568 417 KPLVLCGPPGSGKTMTLLSALRALPDM---------------------E-VVSLNFS-SATTPELLLKTFDHYCEYRKTP 473 (1614)
Q Consensus 417 ~~vLL~Gp~GtGKT~lv~~~~~~l~~~---------------------~-~~~i~~s-~~t~~~~l~~~~~~~~~~~~~~ 473 (1614)
+.+|++||+|+|||+++..+++.+... + +..+... .....+.+...++.
T Consensus 37 ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~hpD~~~i~~~~~~i~i~~iR~l~~~-------- 108 (394)
T PRK07940 37 HAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTHPDVRVVAPEGLSIGVDEVRELVTI-------- 108 (394)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEeccccccCCHHHHHHHHHH--------
Confidence 458999999999999999988754211 1 1112111 12333444433321
Q ss_pred CccccccccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCCCcc
Q psy568 474 NGVILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSH 553 (1614)
Q Consensus 474 ~g~~~~p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~ 553 (1614)
....|. .|++-|+||||++.-... ....+| ..++.. .. ..+.+++|.++ . .+.+
T Consensus 109 --~~~~p~-~~~~kViiIDead~m~~~-----aanaLL-k~LEep-----~~------~~~fIL~a~~~-~-----~llp 162 (394)
T PRK07940 109 --AARRPS-TGRWRIVVIEDADRLTER-----AANALL-KAVEEP-----PP------RTVWLLCAPSP-E-----DVLP 162 (394)
T ss_pred --HHhCcc-cCCcEEEEEechhhcCHH-----HHHHHH-HHhhcC-----CC------CCeEEEEECCh-H-----HChH
Confidence 112343 356678889999984333 123344 444531 11 12445555553 3 5889
Q ss_pred cccccccEEEecCCChhHHHHHHH
Q psy568 554 RFLRHVPVIYVDYPGETSLKQIYG 577 (1614)
Q Consensus 554 r~~r~f~~i~i~~p~~~~l~~I~~ 577 (1614)
.+.+|+..+.++.|+.+++...+.
T Consensus 163 TIrSRc~~i~f~~~~~~~i~~~L~ 186 (394)
T PRK07940 163 TIRSRCRHVALRTPSVEAVAEVLV 186 (394)
T ss_pred HHHhhCeEEECCCCCHHHHHHHHH
Confidence 999999999999999999877754
No 201
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.89 E-value=0.00028 Score=89.80 Aligned_cols=140 Identities=11% Similarity=0.130 Sum_probs=86.8
Q ss_pred HHHHHHhcC---CCEEEecCCCCchHHHHHHHHhcCCCC-------------------------------ceEEEEcccC
Q psy568 408 LLYTWLAEH---KPLVLCGPPGSGKTMTLLSALRALPDM-------------------------------EVVSLNFSSA 453 (1614)
Q Consensus 408 ll~~~l~~~---~~vLL~Gp~GtGKT~lv~~~~~~l~~~-------------------------------~~~~i~~s~~ 453 (1614)
.+..++..| +..||+||+|||||++++.+++.+... ++..++-.+.
T Consensus 27 ~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~ 106 (620)
T PRK14954 27 TIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFDAGTSLNISEFDAASN 106 (620)
T ss_pred HHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHhccCCCCeEEeccccc
Confidence 455666654 458999999999999999888776321 1111222122
Q ss_pred CCHHHHHhHhhcccceeecCCccccccccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecC
Q psy568 454 TTPELLLKTFDHYCEYRKTPNGVILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLER 533 (1614)
Q Consensus 454 t~~~~l~~~~~~~~~~~~~~~g~~~~p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~ 533 (1614)
...+++....+.. .++|. .|.+-|++|||++.- +....+.|...++.-. +.
T Consensus 107 ~~vd~Ir~l~e~~----------~~~P~-~~~~KVvIIdEad~L------t~~a~naLLK~LEePp------------~~ 157 (620)
T PRK14954 107 NSVDDIRQLRENV----------RYGPQ-KGRYRVYIIDEVHML------STAAFNAFLKTLEEPP------------PH 157 (620)
T ss_pred CCHHHHHHHHHHH----------Hhhhh-cCCCEEEEEeChhhc------CHHHHHHHHHHHhCCC------------CC
Confidence 3344454433211 12343 344556778998873 3334555666666411 23
Q ss_pred eEEEEeecCCCCCCCCCCcccccccccEEEecCCChhHHHHHHHHHHH
Q psy568 534 IQCVGACNPPTDPGRKPLSHRFLRHVPVIYVDYPGETSLKQIYGTFSR 581 (1614)
Q Consensus 534 ~~~iaa~n~~~~~g~~~l~~r~~r~f~~i~i~~p~~~~l~~I~~~~~~ 581 (1614)
+.||.+++.. +.+.+.+.+|+.++.+..++.+++...+..++.
T Consensus 158 tv~IL~t~~~-----~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~ 200 (620)
T PRK14954 158 AIFIFATTEL-----HKIPATIASRCQRFNFKRIPLDEIQSQLQMICR 200 (620)
T ss_pred eEEEEEeCCh-----hhhhHHHHhhceEEecCCCCHHHHHHHHHHHHH
Confidence 4555555432 468888999999999999999998887766654
No 202
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.85 E-value=0.00015 Score=88.54 Aligned_cols=141 Identities=16% Similarity=0.270 Sum_probs=86.2
Q ss_pred HHHHHHHhcC---CCEEEecCCCCchHHHHHHHHhcCCC---------Cce--EEEEcccCCCHHHHHhHhhcccceeec
Q psy568 407 SLLYTWLAEH---KPLVLCGPPGSGKTMTLLSALRALPD---------MEV--VSLNFSSATTPELLLKTFDHYCEYRKT 472 (1614)
Q Consensus 407 ~ll~~~l~~~---~~vLL~Gp~GtGKT~lv~~~~~~l~~---------~~~--~~i~~s~~t~~~~l~~~~~~~~~~~~~ 472 (1614)
..+...+..| +++||+||+|+|||++++.+++.+.. ..+ +.++.....+.+.+...++...
T Consensus 27 ~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~~~----- 101 (367)
T PRK14970 27 NTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDDIRNLIDQVR----- 101 (367)
T ss_pred HHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHHHHHHHHHHh-----
Confidence 3455566555 36899999999999999999876532 112 2232222233445554443210
Q ss_pred CCccccccccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCCCc
Q psy568 473 PNGVILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLS 552 (1614)
Q Consensus 473 ~~g~~~~p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~ 552 (1614)
..|. .+++-|++|||++.. +....+.|...++.. .....+|.+++. +..+.
T Consensus 102 -----~~p~-~~~~kiviIDE~~~l------~~~~~~~ll~~le~~------------~~~~~~Il~~~~-----~~kl~ 152 (367)
T PRK14970 102 -----IPPQ-TGKYKIYIIDEVHML------SSAAFNAFLKTLEEP------------PAHAIFILATTE-----KHKII 152 (367)
T ss_pred -----hccc-cCCcEEEEEeChhhc------CHHHHHHHHHHHhCC------------CCceEEEEEeCC-----cccCC
Confidence 1132 244567889999863 222344444555531 123455655543 34678
Q ss_pred ccccccccEEEecCCChhHHHHHHHHHHH
Q psy568 553 HRFLRHVPVIYVDYPGETSLKQIYGTFSR 581 (1614)
Q Consensus 553 ~r~~r~f~~i~i~~p~~~~l~~I~~~~~~ 581 (1614)
+.+.+|+.++.++.|+.+++..+...++.
T Consensus 153 ~~l~sr~~~v~~~~~~~~~l~~~l~~~~~ 181 (367)
T PRK14970 153 PTILSRCQIFDFKRITIKDIKEHLAGIAV 181 (367)
T ss_pred HHHHhcceeEecCCccHHHHHHHHHHHHH
Confidence 88999999999999999999888776554
No 203
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.85 E-value=0.00013 Score=91.07 Aligned_cols=141 Identities=17% Similarity=0.235 Sum_probs=86.2
Q ss_pred HHHHHHHhcCC---CEEEecCCCCchHHHHHHHHhcCCC------Cc-----------------eEEEEcccCCCHHHHH
Q psy568 407 SLLYTWLAEHK---PLVLCGPPGSGKTMTLLSALRALPD------ME-----------------VVSLNFSSATTPELLL 460 (1614)
Q Consensus 407 ~ll~~~l~~~~---~vLL~Gp~GtGKT~lv~~~~~~l~~------~~-----------------~~~i~~s~~t~~~~l~ 460 (1614)
..+..++..++ ..||+||+|+|||++++.+++.+.. .+ ++.++-++....+++.
T Consensus 26 ~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~eidaas~~gvd~ir 105 (486)
T PRK14953 26 RILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEIDAASNRGIDDIR 105 (486)
T ss_pred HHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEEeCccCCCHHHHH
Confidence 35566666653 3589999999999999888876631 11 1122222223333333
Q ss_pred hHhhcccceeecCCccccccccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEee
Q psy568 461 KTFDHYCEYRKTPNGVILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGAC 540 (1614)
Q Consensus 461 ~~~~~~~~~~~~~~g~~~~p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~ 540 (1614)
...+ . ..+.|. .|++-|++|||+++...+ ..+.|...++.. .+.+.||.++
T Consensus 106 ~I~~-~---------~~~~P~-~~~~KVvIIDEad~Lt~~------a~naLLk~LEep------------p~~~v~Il~t 156 (486)
T PRK14953 106 ALRD-A---------VSYTPI-KGKYKVYIIDEAHMLTKE------AFNALLKTLEEP------------PPRTIFILCT 156 (486)
T ss_pred HHHH-H---------HHhCcc-cCCeeEEEEEChhhcCHH------HHHHHHHHHhcC------------CCCeEEEEEE
Confidence 2211 1 123344 466778899999985433 344444555531 1234555555
Q ss_pred cCCCCCCCCCCcccccccccEEEecCCChhHHHHHHHHHHH
Q psy568 541 NPPTDPGRKPLSHRFLRHVPVIYVDYPGETSLKQIYGTFSR 581 (1614)
Q Consensus 541 n~~~~~g~~~l~~r~~r~f~~i~i~~p~~~~l~~I~~~~~~ 581 (1614)
+.+ ..+++.+.+|+..+.+..|+.+++...+..++.
T Consensus 157 t~~-----~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k 192 (486)
T PRK14953 157 TEY-----DKIPPTILSRCQRFIFSKPTKEQIKEYLKRICN 192 (486)
T ss_pred CCH-----HHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHH
Confidence 433 257888999999999999999999888776655
No 204
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.85 E-value=0.00014 Score=93.20 Aligned_cols=140 Identities=17% Similarity=0.260 Sum_probs=89.1
Q ss_pred HHHHHHhcC---CCEEEecCCCCchHHHHHHHHhcCCCC-------------------------ceEEEEcccCCCHHHH
Q psy568 408 LLYTWLAEH---KPLVLCGPPGSGKTMTLLSALRALPDM-------------------------EVVSLNFSSATTPELL 459 (1614)
Q Consensus 408 ll~~~l~~~---~~vLL~Gp~GtGKT~lv~~~~~~l~~~-------------------------~~~~i~~s~~t~~~~l 459 (1614)
.+..++..+ +++||+||+|+|||++++.+++.+... .++.++....+..+.+
T Consensus 27 ~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~i~~g~h~D~~ei~~~~~~~vd~I 106 (620)
T PRK14948 27 TLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRAIAAGNALDVIEIDAASNTGVDNI 106 (620)
T ss_pred HHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHHHhcCCCccEEEEeccccCCHHHH
Confidence 345555554 578999999999999999998876321 1223333333445555
Q ss_pred HhHhhcccceeecCCccccccccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEe
Q psy568 460 LKTFDHYCEYRKTPNGVILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGA 539 (1614)
Q Consensus 460 ~~~~~~~~~~~~~~~g~~~~p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa 539 (1614)
...++. + ...|. .|++-|++|||+++-. ......|...++.- ..++.||.+
T Consensus 107 Reii~~-a---------~~~p~-~~~~KViIIDEad~Lt------~~a~naLLK~LEeP------------p~~tvfIL~ 157 (620)
T PRK14948 107 RELIER-A---------QFAPV-QARWKVYVIDECHMLS------TAAFNALLKTLEEP------------PPRVVFVLA 157 (620)
T ss_pred HHHHHH-H---------hhChh-cCCceEEEEECccccC------HHHHHHHHHHHhcC------------CcCeEEEEE
Confidence 554432 1 12333 3556788899999843 23445555666631 124667776
Q ss_pred ecCCCCCCCCCCcccccccccEEEecCCChhHHHHHHHHHHH
Q psy568 540 CNPPTDPGRKPLSHRFLRHVPVIYVDYPGETSLKQIYGTFSR 581 (1614)
Q Consensus 540 ~n~~~~~g~~~l~~r~~r~f~~i~i~~p~~~~l~~I~~~~~~ 581 (1614)
++.+. .+.+.+.+|+..+.+..++.+++...+..+..
T Consensus 158 t~~~~-----~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~ 194 (620)
T PRK14948 158 TTDPQ-----RVLPTIISRCQRFDFRRIPLEAMVQHLSEIAE 194 (620)
T ss_pred eCChh-----hhhHHHHhheeEEEecCCCHHHHHHHHHHHHH
Confidence 65442 47778999999999999999888777665544
No 205
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=97.83 E-value=0.00016 Score=83.52 Aligned_cols=61 Identities=25% Similarity=0.416 Sum_probs=44.7
Q ss_pred ceeeeCcchhhHHHHHHHHHhc----CCCEEEecCCCCchHHHHHHHHhcCC-CCceEEEEcccCC
Q psy568 394 DVVVPTLDTVRHESLLYTWLAE----HKPLVLCGPPGSGKTMTLLSALRALP-DMEVVSLNFSSAT 454 (1614)
Q Consensus 394 ~~~vpT~~t~r~~~ll~~~l~~----~~~vLL~Gp~GtGKT~lv~~~~~~l~-~~~~~~i~~s~~t 454 (1614)
+-+|--....+...++-.|++. |+.+||.||||||||+++..+++.+. +.|+..++-|.-.
T Consensus 24 ~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiy 89 (398)
T PF06068_consen 24 DGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIY 89 (398)
T ss_dssp TTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-
T ss_pred ccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceee
Confidence 3467777777888888888874 68999999999999999999999984 4566666666543
No 206
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.82 E-value=9.6e-05 Score=94.51 Aligned_cols=141 Identities=14% Similarity=0.158 Sum_probs=91.6
Q ss_pred HHHHHHHhcC---CCEEEecCCCCchHHHHHHHHhcCCCC-----------------------ceEEEEcccCCCHHHHH
Q psy568 407 SLLYTWLAEH---KPLVLCGPPGSGKTMTLLSALRALPDM-----------------------EVVSLNFSSATTPELLL 460 (1614)
Q Consensus 407 ~ll~~~l~~~---~~vLL~Gp~GtGKT~lv~~~~~~l~~~-----------------------~~~~i~~s~~t~~~~l~ 460 (1614)
..+..++..| +..||+||+|+|||++++.+++.+... .++.++-.+....+++.
T Consensus 26 ~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d~~eid~~s~~~v~~ir 105 (576)
T PRK14965 26 RTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVDVFEIDGASNTGVDDIR 105 (576)
T ss_pred HHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCCeeeeeccCccCHHHHH
Confidence 3445556555 346999999999999999888876311 12334433344445554
Q ss_pred hHhhcccceeecCCccccccccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEee
Q psy568 461 KTFDHYCEYRKTPNGVILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGAC 540 (1614)
Q Consensus 461 ~~~~~~~~~~~~~~g~~~~p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~ 540 (1614)
..++. + -+.|. .+++-|++|||+|+-. ......|+..++.- .+++.||.++
T Consensus 106 ~l~~~-~---------~~~p~-~~~~KVvIIdev~~Lt------~~a~naLLk~LEep------------p~~~~fIl~t 156 (576)
T PRK14965 106 ELREN-V---------KYLPS-RSRYKIFIIDEVHMLS------TNAFNALLKTLEEP------------PPHVKFIFAT 156 (576)
T ss_pred HHHHH-H---------Hhccc-cCCceEEEEEChhhCC------HHHHHHHHHHHHcC------------CCCeEEEEEe
Confidence 43321 1 12343 3556677889999843 33556666666641 1356677766
Q ss_pred cCCCCCCCCCCcccccccccEEEecCCChhHHHHHHHHHHH
Q psy568 541 NPPTDPGRKPLSHRFLRHVPVIYVDYPGETSLKQIYGTFSR 581 (1614)
Q Consensus 541 n~~~~~g~~~l~~r~~r~f~~i~i~~p~~~~l~~I~~~~~~ 581 (1614)
+.+ +.|++.+.+|+..+.+..++.+++...+..++.
T Consensus 157 ~~~-----~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~ 192 (576)
T PRK14965 157 TEP-----HKVPITILSRCQRFDFRRIPLQKIVDRLRYIAD 192 (576)
T ss_pred CCh-----hhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHH
Confidence 644 368899999999999999999998877766654
No 207
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.82 E-value=5.1e-05 Score=86.81 Aligned_cols=217 Identities=13% Similarity=0.166 Sum_probs=124.3
Q ss_pred eeeCcchhhHHHHHHHHHh-cCCCEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCCHHHHHhHhhcccceeecCC
Q psy568 396 VVPTLDTVRHESLLYTWLA-EHKPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTPELLLKTFDHYCEYRKTPN 474 (1614)
Q Consensus 396 ~vpT~~t~r~~~ll~~~l~-~~~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~~~~l~~~~~~~~~~~~~~~ 474 (1614)
+|-..+...+..-+...+. .+.|.||+|..|+||+++++ ++..+.+..+..+..+...+-.++..-+...+.+.
T Consensus 10 lVlf~~ai~hi~ri~RvL~~~~Gh~LLvG~~GsGr~sl~r-Laa~i~~~~~~~i~~~~~y~~~~f~~dLk~~~~~a---- 84 (268)
T PF12780_consen 10 LVLFDEAIEHIARISRVLSQPRGHALLVGVGGSGRQSLAR-LAAFICGYEVFQIEITKGYSIKDFKEDLKKALQKA---- 84 (268)
T ss_dssp ----HHHHHHHHHHHHHHCSTTEEEEEECTTTSCHHHHHH-HHHHHTTEEEE-TTTSTTTHHHHHHHHHHHHHHHH----
T ss_pred eeeHHHHHHHHHHHHHHHcCCCCCeEEecCCCccHHHHHH-HHHHHhccceEEEEeeCCcCHHHHHHHHHHHHHHH----
Confidence 3444566667666666665 56889999999999999875 66666677777777777666655544443322211
Q ss_pred ccccccccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCc---eeeCCCCc------------------------
Q psy568 475 GVILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRG---FYRPADKQ------------------------ 527 (1614)
Q Consensus 475 g~~~~p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~---~~~~~~~~------------------------ 527 (1614)
| -.|+..+++++|-... ....+|.+..++..|. +|..+...
T Consensus 85 g------~~~~~~vfll~d~qi~------~~~fLe~in~LL~sGeip~LF~~eE~~~i~~~l~~~~~~~~~~~~~~~~~~ 152 (268)
T PF12780_consen 85 G------IKGKPTVFLLTDSQIV------DESFLEDINSLLSSGEIPNLFTKEELDNIISSLREEAKAEGISDSRESLYE 152 (268)
T ss_dssp H------CS-S-EEEEEECCCSS------SCHHHHHHHHHHHCSS-TTTS-TCHHHHHHHHHHHHHHHCT--SSHHHHHH
T ss_pred h------ccCCCeEEEecCcccc------hHhHHHHHHHHHhCCCCCCCccHHHHHHHHHHhHHHHHHcCCCCchHHHHH
Confidence 2 2577789999998773 3345667777776654 33322100
Q ss_pred -e--EeecCeEEEEeecCCCCCCC--CCCcccccccccEEEecCCChhHHHHHHHHHHHhhhhcchhhhhhHHHHHHHHH
Q psy568 528 -W--VSLERIQCVGACNPPTDPGR--KPLSHRFLRHVPVIYVDYPGETSLKQIYGTFSRAMLRLIPPLRGYADALTNAMV 602 (1614)
Q Consensus 528 -~--~~~~~~~~iaa~n~~~~~g~--~~l~~r~~r~f~~i~i~~p~~~~l~~I~~~~~~~~~~~~~~~~~~~~~l~~~~~ 602 (1614)
+ +--.++.+|-++.|.+..-| ..--|++.+.+.+.++..-+.+.+..|-..++.......+ .....++....
T Consensus 153 ~F~~rvr~nLHivl~~sp~~~~~r~~~~~fPaL~~~ctIdW~~~W~~eaL~~Va~~~l~~~~~~~~---~~~~~l~~~~~ 229 (268)
T PF12780_consen 153 FFIERVRKNLHIVLCMSPVGPNFRDRCRSFPALVNCCTIDWFDPWPEEALLSVANKFLSDIELLSE---ELKKSLAEIMV 229 (268)
T ss_dssp HHHHHHCCCEEEEEEESTTTTCCCHHHHHHCCHHHHSEEEEEES--HHHHHHHHHHHCCHHHTSS-----HHHHHHHHHH
T ss_pred HHHHHHHhheeEEEEECCCCchHHHHHHhCcchhcccEEEeCCcCCHHHHHHHHHHHHHhhcccch---hHHHHHHHHHH
Confidence 0 11247899999999763222 2346788888999999999999999998877765532222 23345555555
Q ss_pred HHHHHH---HhhcCCCCCCccccChhhHHHHhh
Q psy568 603 ELYLAS---QEKFTQDMQPHYVYSPREMTRWVR 632 (1614)
Q Consensus 603 ~~~~~~---~~~~~~~~~~hY~F~lRdl~~v~~ 632 (1614)
.++..+ ...+....+.||..+++.....++
T Consensus 230 ~iH~sv~~~s~~y~~~~~r~~yvTP~syL~~i~ 262 (268)
T PF12780_consen 230 FIHQSVEEISRKYLQELRRYNYVTPKSYLEFIK 262 (268)
T ss_dssp HHHHHHHHHHHHHHHHCS------HHHHHHHHH
T ss_pred HHhccchHhHHHHHHHcCCcceECcHHHHHHHh
Confidence 554332 222222223455556665554444
No 208
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.81 E-value=1.4e-05 Score=82.08 Aligned_cols=109 Identities=25% Similarity=0.401 Sum_probs=70.3
Q ss_pred cCCCEEEecCCCCchHHHHHHHHhcCC-------CCceEEEEcccCCCHHHHHhHhhcccceeecCC-------cccccc
Q psy568 415 EHKPLVLCGPPGSGKTMTLLSALRALP-------DMEVVSLNFSSATTPELLLKTFDHYCEYRKTPN-------GVILSP 480 (1614)
Q Consensus 415 ~~~~vLL~Gp~GtGKT~lv~~~~~~l~-------~~~~~~i~~s~~t~~~~l~~~~~~~~~~~~~~~-------g~~~~p 480 (1614)
.+..++++||+|+|||++++.+++.+. +..++.++++...++..+...+-..+....... ..+...
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA 82 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence 567899999999999999999998764 456788999988888877777655444322110 011111
Q ss_pred ccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecC
Q psy568 481 IQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNP 542 (1614)
Q Consensus 481 ~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~ 542 (1614)
....+..+++|||++... ....++.|+.+.+. .++.+|.++.|
T Consensus 83 l~~~~~~~lviDe~~~l~-----~~~~l~~l~~l~~~--------------~~~~vvl~G~~ 125 (131)
T PF13401_consen 83 LDRRRVVLLVIDEADHLF-----SDEFLEFLRSLLNE--------------SNIKVVLVGTP 125 (131)
T ss_dssp HHHCTEEEEEEETTHHHH-----THHHHHHHHHHTCS--------------CBEEEEEEESS
T ss_pred HHhcCCeEEEEeChHhcC-----CHHHHHHHHHHHhC--------------CCCeEEEEECh
Confidence 222334688899999832 36688888888761 25666776665
No 209
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=97.79 E-value=0.0003 Score=90.29 Aligned_cols=133 Identities=14% Similarity=0.172 Sum_probs=72.4
Q ss_pred EEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCc--------eEe-ecCeEEEEeecCCCCCCCCCCcccccc
Q psy568 487 LVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQ--------WVS-LERIQCVGACNPPTDPGRKPLSHRFLR 557 (1614)
Q Consensus 487 ~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~--------~~~-~~~~~~iaa~n~~~~~g~~~l~~r~~r 557 (1614)
.++||||++...+ .....|...++.+.+....... ... .-++++|+++|+.. ...+++.|.+
T Consensus 219 GtL~Ldei~~L~~------~~q~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~~~---l~~l~~~l~~ 289 (608)
T TIGR00764 219 GVLYIDEIKTMPL------EVQQYLLTALQDKKFPITGQSENSSGAMVRTEPVPCDFILVASGNLDD---LEGMHPALRS 289 (608)
T ss_pred CEEEEEChHhCCH------HHHHHHHHHHHhCcEEecCccccccccccCCCCCccceEEEEECCHHH---HhhcCHHHHH
Confidence 6788899987332 3556666777777655432211 111 23899999999852 2358999999
Q ss_pred ccc---E-EEec--CC-ChhHHHHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHHHhhcCCCCCCccccChhhHHHH
Q psy568 558 HVP---V-IYVD--YP-GETSLKQIYGTFSRAMLRLIPPLRGYADALTNAMVELYLASQEKFTQDMQPHYVYSPREMTRW 630 (1614)
Q Consensus 558 ~f~---~-i~i~--~p-~~~~l~~I~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~hY~F~lRdl~~v 630 (1614)
||. + +.++ .| +.+....+.+-+...... ......+....+..+++.+.+.. ..+.+...+.|++.++
T Consensus 290 rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~~~r-~G~l~~~s~~Av~~Li~~~~R~a-----g~r~~lsl~~R~L~~l 363 (608)
T TIGR00764 290 RIRGYGYEVYMKDTMPDTPENRDKLVQFVAQEVKK-DGRIPHFTRDAVEEIVREAQRRA-----GRKDHLTLRLRELGGL 363 (608)
T ss_pred HhcCCeEEEEeeccCCCCHHHHHHHHHHHHHHHHH-hCCCCcCCHHHHHHHHHHHHHHH-----hcccccCCCHHHHHHH
Confidence 998 3 2332 23 344444443322222111 10111333444444444433221 3344566788999888
Q ss_pred hhhh
Q psy568 631 VRGI 634 (1614)
Q Consensus 631 ~~~i 634 (1614)
++..
T Consensus 364 lR~A 367 (608)
T TIGR00764 364 VRAA 367 (608)
T ss_pred HHHH
Confidence 8764
No 210
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.77 E-value=0.00017 Score=89.39 Aligned_cols=140 Identities=15% Similarity=0.197 Sum_probs=87.7
Q ss_pred HHHHHHhcC---CCEEEecCCCCchHHHHHHHHhcCCCC------------------------ceEEEEcccCCCHHHHH
Q psy568 408 LLYTWLAEH---KPLVLCGPPGSGKTMTLLSALRALPDM------------------------EVVSLNFSSATTPELLL 460 (1614)
Q Consensus 408 ll~~~l~~~---~~vLL~Gp~GtGKT~lv~~~~~~l~~~------------------------~~~~i~~s~~t~~~~l~ 460 (1614)
.+..++..| +..|++||+|+|||++++.+++.+... .++.++-......+.+.
T Consensus 28 ~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d~~~i~g~~~~gid~ir 107 (451)
T PRK06305 28 VLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLDVLEIDGASHRGIEDIR 107 (451)
T ss_pred HHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCceEEeeccccCCHHHHH
Confidence 455566554 347899999999999999998866321 12223322223334443
Q ss_pred hHhhcccceeecCCccccccccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEee
Q psy568 461 KTFDHYCEYRKTPNGVILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGAC 540 (1614)
Q Consensus 461 ~~~~~~~~~~~~~~g~~~~p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~ 540 (1614)
...+ .+ .+.|. .+.+-|++|||++.- +....+.|..+++... +.+.||.++
T Consensus 108 ~i~~-~l---------~~~~~-~~~~kvvIIdead~l------t~~~~n~LLk~lEep~------------~~~~~Il~t 158 (451)
T PRK06305 108 QINE-TV---------LFTPS-KSRYKIYIIDEVHML------TKEAFNSLLKTLEEPP------------QHVKFFLAT 158 (451)
T ss_pred HHHH-HH---------Hhhhh-cCCCEEEEEecHHhh------CHHHHHHHHHHhhcCC------------CCceEEEEe
Confidence 3221 11 12222 245567788999873 3334556666666411 245666666
Q ss_pred cCCCCCCCCCCcccccccccEEEecCCChhHHHHHHHHHHH
Q psy568 541 NPPTDPGRKPLSHRFLRHVPVIYVDYPGETSLKQIYGTFSR 581 (1614)
Q Consensus 541 n~~~~~g~~~l~~r~~r~f~~i~i~~p~~~~l~~I~~~~~~ 581 (1614)
+.+ ..+.+.+.+|+.++.+..++.+++...+..++.
T Consensus 159 ~~~-----~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~ 194 (451)
T PRK06305 159 TEI-----HKIPGTILSRCQKMHLKRIPEETIIDKLALIAK 194 (451)
T ss_pred CCh-----HhcchHHHHhceEEeCCCCCHHHHHHHHHHHHH
Confidence 533 368889999999999999999999888766554
No 211
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.77 E-value=5.9e-05 Score=77.37 Aligned_cols=68 Identities=26% Similarity=0.447 Sum_probs=54.8
Q ss_pred EEEeecCCCChHHHHHHHHHHcCCeEEEEEecCCC--ChhcHHHHHHHHHHHhccCCCcEEEEEcCCccc
Q psy568 760 LLLIGVSGAGKTTLSRFVAFMNGLSVFQIRAHNKY--TGADFDEDLRTVLRRSGCKNEKIAFLLDESNVL 827 (1614)
Q Consensus 760 ~LLvG~~GsGKtsl~rlaA~~~~~~~~~i~~~~~~--~~~df~~~lk~~l~~ag~~~~~~v~ll~d~~i~ 827 (1614)
+||.||+|+|||++++.+|...+.+++.++..... ...+....++.++..+...+++.++++||-+..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l 70 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKL 70 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGT
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhc
Confidence 68999999999999999999999999999866543 234566778888888765556899999986543
No 212
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=97.77 E-value=0.00032 Score=88.92 Aligned_cols=211 Identities=14% Similarity=0.128 Sum_probs=116.8
Q ss_pred chhhHHHHHHHHHhcCCCEEEecCCCCchHHHHHHHHhcC--CCCceEEEEcccCCCHHHHHhHhhccc----c-eeecC
Q psy568 401 DTVRHESLLYTWLAEHKPLVLCGPPGSGKTMTLLSALRAL--PDMEVVSLNFSSATTPELLLKTFDHYC----E-YRKTP 473 (1614)
Q Consensus 401 ~t~r~~~ll~~~l~~~~~vLL~Gp~GtGKT~lv~~~~~~l--~~~~~~~i~~s~~t~~~~l~~~~~~~~----~-~~~~~ 473 (1614)
........+..+...+.++++.|++||||+++++.+.... .+.+++.++|..... +.+...+-+.. . .....
T Consensus 142 ~~~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~-~~~~~~lfg~~~~~~~~~~~~~ 220 (463)
T TIGR01818 142 AMQEVFRAIGRLSRSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPK-DLIESELFGHEKGAFTGANTRR 220 (463)
T ss_pred HHHHHHHHHHHHhCcCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCH-HHHHHHhcCCCCCCCCCcccCC
Confidence 3344455556667788999999999999999876665543 246789999987633 33333321110 0 00001
Q ss_pred CccccccccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCC--CCCCCC
Q psy568 474 NGVILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTD--PGRKPL 551 (1614)
Q Consensus 474 ~g~~~~p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~--~g~~~l 551 (1614)
.|.+..+ ....+||||++.. +.....-|.++++.+.+...++. .....++++|+|++..-. .....+
T Consensus 221 ~g~~~~a----~~gtl~l~ei~~l------~~~~q~~ll~~l~~~~~~~~~~~-~~~~~~~rii~~~~~~l~~~~~~~~f 289 (463)
T TIGR01818 221 QGRFEQA----DGGTLFLDEIGDM------PLDAQTRLLRVLADGEFYRVGGR-TPIKVDVRIVAATHQNLEALVRQGKF 289 (463)
T ss_pred CCcEEEC----CCCeEEEEchhhC------CHHHHHHHHHHHhcCcEEECCCC-ceeeeeeEEEEeCCCCHHHHHHcCCc
Confidence 1322222 1255888999873 33455666677777665542222 222347899999886520 012245
Q ss_pred cccccccccEEE--ecCCC--hhHHHHHHHHHHHhhhhcch-hhhhhHHHHHHHHHHHHHHHHhhcCCCCCCccccChhh
Q psy568 552 SHRFLRHVPVIY--VDYPG--ETSLKQIYGTFSRAMLRLIP-PLRGYADALTNAMVELYLASQEKFTQDMQPHYVYSPRE 626 (1614)
Q Consensus 552 ~~r~~r~f~~i~--i~~p~--~~~l~~I~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~hY~F~lRd 626 (1614)
.+.|..++.++. +|+.. .+++..+...++..+..... .+.. +....+... . .-+|.-|+|+
T Consensus 290 ~~~L~~rl~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~----~~~~a~~~L---~-------~~~wpgNvre 355 (463)
T TIGR01818 290 REDLFHRLNVIRIHLPPLRERREDIPRLARHFLALAARELDVEPKL----LDPEALERL---K-------QLRWPGNVRQ 355 (463)
T ss_pred HHHHHHHhCcceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCC----cCHHHHHHH---H-------hCCCCChHHH
Confidence 556666666444 44444 45666666655544321110 0111 111111111 1 1156779999
Q ss_pred HHHHhhhhhcc
Q psy568 627 MTRWVRGICEA 637 (1614)
Q Consensus 627 l~~v~~~i~~~ 637 (1614)
|.+++..++..
T Consensus 356 L~~~~~~~~~~ 366 (463)
T TIGR01818 356 LENLCRWLTVM 366 (463)
T ss_pred HHHHHHHHHHh
Confidence 99999987753
No 213
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.76 E-value=0.00021 Score=90.93 Aligned_cols=139 Identities=17% Similarity=0.201 Sum_probs=88.5
Q ss_pred HHHHHhcC---CCEEEecCCCCchHHHHHHHHhcCCCC----------------------------ceEEEEcccCCCHH
Q psy568 409 LYTWLAEH---KPLVLCGPPGSGKTMTLLSALRALPDM----------------------------EVVSLNFSSATTPE 457 (1614)
Q Consensus 409 l~~~l~~~---~~vLL~Gp~GtGKT~lv~~~~~~l~~~----------------------------~~~~i~~s~~t~~~ 457 (1614)
+..++..| +.+||+||+|+|||++++.+++.+... .++.++-.+.+..+
T Consensus 36 L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd 115 (598)
T PRK09111 36 LTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQAIMEGRHVDVLEMDAASHTGVD 115 (598)
T ss_pred HHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHHHHhcCCCCceEEecccccCCHH
Confidence 44555555 469999999999999999998866311 11222223344555
Q ss_pred HHHhHhhcccceeecCCccccccccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEE
Q psy568 458 LLLKTFDHYCEYRKTPNGVILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCV 537 (1614)
Q Consensus 458 ~l~~~~~~~~~~~~~~~g~~~~p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~i 537 (1614)
++...++. +. +.|. .+++-|++|||+++- +......|...++.- .+.+.||
T Consensus 116 ~IReIie~-~~---------~~P~-~a~~KVvIIDEad~L------s~~a~naLLKtLEeP------------p~~~~fI 166 (598)
T PRK09111 116 DIREIIES-VR---------YRPV-SARYKVYIIDEVHML------STAAFNALLKTLEEP------------PPHVKFI 166 (598)
T ss_pred HHHHHHHH-HH---------hchh-cCCcEEEEEEChHhC------CHHHHHHHHHHHHhC------------CCCeEEE
Confidence 55554432 11 2233 244556788999984 333445555555541 1246666
Q ss_pred EeecCCCCCCCCCCcccccccccEEEecCCChhHHHHHHHHHHH
Q psy568 538 GACNPPTDPGRKPLSHRFLRHVPVIYVDYPGETSLKQIYGTFSR 581 (1614)
Q Consensus 538 aa~n~~~~~g~~~l~~r~~r~f~~i~i~~p~~~~l~~I~~~~~~ 581 (1614)
.+++... .+.+.+.+|+..+.+..++.+++...+..++.
T Consensus 167 l~tte~~-----kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~ 205 (598)
T PRK09111 167 FATTEIR-----KVPVTVLSRCQRFDLRRIEADVLAAHLSRIAA 205 (598)
T ss_pred EEeCChh-----hhhHHHHhheeEEEecCCCHHHHHHHHHHHHH
Confidence 6665432 47777999999999999999999988877665
No 214
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=0.00019 Score=85.97 Aligned_cols=162 Identities=20% Similarity=0.204 Sum_probs=103.7
Q ss_pred hHHHHHHHHHhcC--CCEEEecCCCCchHHHHHHHHhcCC----CCceEEEEcccCCCHHHHHhHhhcccc---eeecCC
Q psy568 404 RHESLLYTWLAEH--KPLVLCGPPGSGKTMTLLSALRALP----DMEVVSLNFSSATTPELLLKTFDHYCE---YRKTPN 474 (1614)
Q Consensus 404 r~~~ll~~~l~~~--~~vLL~Gp~GtGKT~lv~~~~~~l~----~~~~~~i~~s~~t~~~~l~~~~~~~~~---~~~~~~ 474 (1614)
+....+..++..+ .+++++||||||||++++.+++.+. +..++.+||-...++..+...+-..+. ....+.
T Consensus 28 ~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~~~p~~g~~~ 107 (366)
T COG1474 28 QLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLGKVPLTGDSS 107 (366)
T ss_pred HHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcCCCCCCCCch
Confidence 3344455566655 3589999999999999999998763 233789999988888776666544221 111100
Q ss_pred cccc----cc-ccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCC
Q psy568 475 GVIL----SP-IQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRK 549 (1614)
Q Consensus 475 g~~~----~p-~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~ 549 (1614)
...+ .. ...++.+|+.+||+|.-.... + +.|-.++...+-. ...+.+|+..|... -..
T Consensus 108 ~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~-~-----~~LY~L~r~~~~~---------~~~v~vi~i~n~~~--~~~ 170 (366)
T COG1474 108 LEILKRLYDNLSKKGKTVIVILDEVDALVDKD-G-----EVLYSLLRAPGEN---------KVKVSIIAVSNDDK--FLD 170 (366)
T ss_pred HHHHHHHHHHHHhcCCeEEEEEcchhhhcccc-c-----hHHHHHHhhcccc---------ceeEEEEEEeccHH--HHH
Confidence 1111 11 113677999999999743331 2 4444444322211 34577888887653 255
Q ss_pred CCccccccccc--EEEecCCChhHHHHHHHHHHHh
Q psy568 550 PLSHRFLRHVP--VIYVDYPGETSLKQIYGTFSRA 582 (1614)
Q Consensus 550 ~l~~r~~r~f~--~i~i~~p~~~~l~~I~~~~~~~ 582 (1614)
.+++|..+++. .|.+++.+.+++..|+..-...
T Consensus 171 ~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~ 205 (366)
T COG1474 171 YLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEE 205 (366)
T ss_pred HhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHh
Confidence 78899988777 4678889999999998776554
No 215
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.75 E-value=0.00018 Score=91.15 Aligned_cols=139 Identities=17% Similarity=0.240 Sum_probs=87.0
Q ss_pred HHHHHhcC---CCEEEecCCCCchHHHHHHHHhcCCCC-----------------------ceEEEEcccCCCHHHHHhH
Q psy568 409 LYTWLAEH---KPLVLCGPPGSGKTMTLLSALRALPDM-----------------------EVVSLNFSSATTPELLLKT 462 (1614)
Q Consensus 409 l~~~l~~~---~~vLL~Gp~GtGKT~lv~~~~~~l~~~-----------------------~~~~i~~s~~t~~~~l~~~ 462 (1614)
+..++..| +..||+||+|+|||++++.+++.+... .++.++-.+.+..+++...
T Consensus 28 L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~dv~~idgas~~~vddIr~l 107 (563)
T PRK06647 28 LKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLDVIEIDGASNTSVQDVRQI 107 (563)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCCeEEecCcccCCHHHHHHH
Confidence 44555544 347999999999999999998876321 1222322222444444433
Q ss_pred hhcccceeecCCccccccccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecC
Q psy568 463 FDHYCEYRKTPNGVILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNP 542 (1614)
Q Consensus 463 ~~~~~~~~~~~~g~~~~p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~ 542 (1614)
.+. ..+.|. .+++-|++|||+++- +......|...++. + .+.+.||.+++.
T Consensus 108 ~e~----------~~~~p~-~~~~KVvIIDEa~~L------s~~a~naLLK~LEe-----p-------p~~~vfI~~tte 158 (563)
T PRK06647 108 KEE----------IMFPPA-SSRYRVYIIDEVHML------SNSAFNALLKTIEE-----P-------PPYIVFIFATTE 158 (563)
T ss_pred HHH----------HHhchh-cCCCEEEEEEChhhc------CHHHHHHHHHhhcc-----C-------CCCEEEEEecCC
Confidence 321 123343 355567889999983 33344445455553 1 135667666644
Q ss_pred CCCCCCCCCcccccccccEEEecCCChhHHHHHHHHHHH
Q psy568 543 PTDPGRKPLSHRFLRHVPVIYVDYPGETSLKQIYGTFSR 581 (1614)
Q Consensus 543 ~~~~g~~~l~~r~~r~f~~i~i~~p~~~~l~~I~~~~~~ 581 (1614)
+ ..+++.+.+|+.++.+..++.+++...+..++.
T Consensus 159 ~-----~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~ 192 (563)
T PRK06647 159 V-----HKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCL 192 (563)
T ss_pred h-----HHhHHHHHHhceEEEecCCCHHHHHHHHHHHHH
Confidence 3 258889999999999999999998888766553
No 216
>KOG0979|consensus
Probab=97.75 E-value=0.34 Score=62.52 Aligned_cols=32 Identities=22% Similarity=0.310 Sum_probs=25.5
Q ss_pred CCcc-EEEeecCCCChHHHHHHHHHHcCCeEEE
Q psy568 756 PQGH-LLLIGVSGAGKTTLSRFVAFMNGLSVFQ 787 (1614)
Q Consensus 756 p~gh-~LLvG~~GsGKtsl~rlaA~~~~~~~~~ 787 (1614)
|+.+ =|++||.||||+|++-..|-.+|.+.-.
T Consensus 40 pgpsLNmIiGpNGSGKSSiVcAIcLglgG~Pk~ 72 (1072)
T KOG0979|consen 40 PGPSLNMIIGPNGSGKSSIVCAICLGLGGKPKL 72 (1072)
T ss_pred CCCceeeEECCCCCCchHHHHHHHHHcCCChhh
Confidence 4444 3689999999999999999888866544
No 217
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.73 E-value=0.00079 Score=86.43 Aligned_cols=141 Identities=14% Similarity=0.244 Sum_probs=91.2
Q ss_pred HHHHHHhcC---CCEEEecCCCCchHHHHHHHHhcCC------------------------CCceEEEEcccCCCHHHHH
Q psy568 408 LLYTWLAEH---KPLVLCGPPGSGKTMTLLSALRALP------------------------DMEVVSLNFSSATTPELLL 460 (1614)
Q Consensus 408 ll~~~l~~~---~~vLL~Gp~GtGKT~lv~~~~~~l~------------------------~~~~~~i~~s~~t~~~~l~ 460 (1614)
.+..++..| +..||+||+|+|||+++..+++.+. ...+..++.++....+++.
T Consensus 28 ~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~~~ld~~~~~~vd~Ir 107 (614)
T PRK14971 28 TLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNIHELDAASNNSVDDIR 107 (614)
T ss_pred HHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCceEEecccccCCHHHHH
Confidence 455566555 3479999999999998888777552 1233445554444455665
Q ss_pred hHhhcccceeecCCccccccccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEee
Q psy568 461 KTFDHYCEYRKTPNGVILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGAC 540 (1614)
Q Consensus 461 ~~~~~~~~~~~~~~g~~~~p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~ 540 (1614)
..++.. ...|. .|.+=|++|||+++- +......|+..++.-. +.+.||.++
T Consensus 108 ~li~~~----------~~~P~-~~~~KVvIIdea~~L------s~~a~naLLK~LEepp------------~~tifIL~t 158 (614)
T PRK14971 108 NLIEQV----------RIPPQ-IGKYKIYIIDEVHML------SQAAFNAFLKTLEEPP------------SYAIFILAT 158 (614)
T ss_pred HHHHHH----------hhCcc-cCCcEEEEEECcccC------CHHHHHHHHHHHhCCC------------CCeEEEEEe
Confidence 554321 11232 244456678999984 3345566666766411 235566666
Q ss_pred cCCCCCCCCCCcccccccccEEEecCCChhHHHHHHHHHHHh
Q psy568 541 NPPTDPGRKPLSHRFLRHVPVIYVDYPGETSLKQIYGTFSRA 582 (1614)
Q Consensus 541 n~~~~~g~~~l~~r~~r~f~~i~i~~p~~~~l~~I~~~~~~~ 582 (1614)
+. ++.+.+.+.+|+.++.+..++.+++...+..++..
T Consensus 159 t~-----~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~ 195 (614)
T PRK14971 159 TE-----KHKILPTILSRCQIFDFNRIQVADIVNHLQYVASK 195 (614)
T ss_pred CC-----chhchHHHHhhhheeecCCCCHHHHHHHHHHHHHH
Confidence 43 34688899999999999999999998887765543
No 218
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.71 E-value=0.00015 Score=89.01 Aligned_cols=141 Identities=12% Similarity=0.135 Sum_probs=85.0
Q ss_pred HHHHHHHhcC---CCEEEecCCCCchHHHHHHHHhcCCCC-------------------------------ceEEEEccc
Q psy568 407 SLLYTWLAEH---KPLVLCGPPGSGKTMTLLSALRALPDM-------------------------------EVVSLNFSS 452 (1614)
Q Consensus 407 ~ll~~~l~~~---~~vLL~Gp~GtGKT~lv~~~~~~l~~~-------------------------------~~~~i~~s~ 452 (1614)
..+..++..| +.+|++||+|+|||+++..+++.+... .++.++-+.
T Consensus 26 ~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~~~~n~~~~~~~~ 105 (397)
T PRK14955 26 RTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFDAGTSLNISEFDAAS 105 (397)
T ss_pred HHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHhcCCCCCeEeecccc
Confidence 3456667665 348999999999999999988866321 111222222
Q ss_pred CCCHHHHHhHhhcccceeecCCccccccccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeec
Q psy568 453 ATTPELLLKTFDHYCEYRKTPNGVILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLE 532 (1614)
Q Consensus 453 ~t~~~~l~~~~~~~~~~~~~~~g~~~~p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~ 532 (1614)
....+++....+. + ...|. .+.+-|++|||++.-.. .....|...++. + .+
T Consensus 106 ~~~id~Ir~l~~~-~---------~~~p~-~~~~kvvIIdea~~l~~------~~~~~LLk~LEe-----p-------~~ 156 (397)
T PRK14955 106 NNSVDDIRLLREN-V---------RYGPQ-KGRYRVYIIDEVHMLSI------AAFNAFLKTLEE-----P-------PP 156 (397)
T ss_pred cCCHHHHHHHHHH-H---------hhchh-cCCeEEEEEeChhhCCH------HHHHHHHHHHhc-----C-------CC
Confidence 2223444433221 1 12343 35566788999987332 233334444443 1 12
Q ss_pred CeEEEEeecCCCCCCCCCCcccccccccEEEecCCChhHHHHHHHHHHH
Q psy568 533 RIQCVGACNPPTDPGRKPLSHRFLRHVPVIYVDYPGETSLKQIYGTFSR 581 (1614)
Q Consensus 533 ~~~~iaa~n~~~~~g~~~l~~r~~r~f~~i~i~~p~~~~l~~I~~~~~~ 581 (1614)
.+.||.+++.. ..+.+.+.+|+.++.+..++.+++...+..++.
T Consensus 157 ~t~~Il~t~~~-----~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~ 200 (397)
T PRK14955 157 HAIFIFATTEL-----HKIPATIASRCQRFNFKRIPLEEIQQQLQGICE 200 (397)
T ss_pred CeEEEEEeCCh-----HHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Confidence 45555555432 367788999999999999999998887766554
No 219
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.69 E-value=0.00092 Score=77.42 Aligned_cols=143 Identities=17% Similarity=0.252 Sum_probs=82.3
Q ss_pred CccEEEeecCCCChHHHHHHHHHHc-------CCeEEEEEecCCCC--hhcHHHHHHHHHHHhccCCCcEEEEEcCCccc
Q psy568 757 QGHLLLIGVSGAGKTTLSRFVAFMN-------GLSVFQIRAHNKYT--GADFDEDLRTVLRRSGCKNEKIAFLLDESNVL 827 (1614)
Q Consensus 757 ~gh~LLvG~~GsGKtsl~rlaA~~~-------~~~~~~i~~~~~~~--~~df~~~lk~~l~~ag~~~~~~v~ll~d~~i~ 827 (1614)
.+|++|.||+|||||++++.+|... ...++.+....-.+ ..+....++.++.++. +.++++||.+-
T Consensus 42 ~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~l~~~~~g~~~~~~~~~~~~a~----~~VL~IDE~~~- 116 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERADLVGEYIGHTAQKTREVIKKAL----GGVLFIDEAYS- 116 (261)
T ss_pred cceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHHhhhhhccchHHHHHHHHHhcc----CCEEEEechhh-
Confidence 4689999999999999999998753 12344433221111 1111234455665552 34777877432
Q ss_pred ccchHHHHHHhhccCCCCCCCChhhHHHHHHHhHHHHHHcCCCCCCHHHHHHHHHHHHhhcceEEEEECCCChhhHHHhh
Q psy568 828 ESGFLERMNTLLANGEIPGLFEGDEYTTLMTQCKEGAQREGLMLDSNEELYKWFTQQVMKNLHVVFTMNPSSEGLKDRAA 907 (1614)
Q Consensus 828 ~~~~le~in~lL~~G~v~~Lf~~eE~~~i~~~~~~~~~~~~~~~~s~~~l~~~f~~rv~~nlhivl~~sp~~~~~r~~~~ 907 (1614)
|...|+ .-|..+.++.++..+. .-+.++.++++-.|. .+.....
T Consensus 117 ----------L~~~~~--~~~~~~~i~~Ll~~~e----------------------~~~~~~~vila~~~~--~~~~~~~ 160 (261)
T TIGR02881 117 ----------LARGGE--KDFGKEAIDTLVKGME----------------------DNRNEFVLILAGYSD--EMDYFLS 160 (261)
T ss_pred ----------hccCCc--cchHHHHHHHHHHHHh----------------------ccCCCEEEEecCCcc--hhHHHHh
Confidence 111221 1133333333322211 112355555554442 2333445
Q ss_pred hCccccccc-eecccCCCcHHHHHHHHHHhhccc
Q psy568 908 TSPALFNRC-VLNWFGDWSDTALYQVAKEFTSKI 940 (1614)
Q Consensus 908 ~~PaL~~~~-~i~wf~~W~~eaL~~va~~~l~~~ 940 (1614)
..|+|.+++ ....|.+.+.+.+..+..+++...
T Consensus 161 ~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~~ 194 (261)
T TIGR02881 161 LNPGLRSRFPISIDFPDYTVEELMEIAERMVKER 194 (261)
T ss_pred cChHHHhccceEEEECCCCHHHHHHHHHHHHHHc
Confidence 679999998 458899999999999999988753
No 220
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=97.68 E-value=0.00029 Score=83.55 Aligned_cols=160 Identities=16% Similarity=0.117 Sum_probs=92.3
Q ss_pred eeeeCcchhhHHHHHHHHHhcCCCEEEecCCCCchHHHHHHHHhcC--CCCceEEEEcccCCCH---HHHHhHhhcccc-
Q psy568 395 VVVPTLDTVRHESLLYTWLAEHKPLVLCGPPGSGKTMTLLSALRAL--PDMEVVSLNFSSATTP---ELLLKTFDHYCE- 468 (1614)
Q Consensus 395 ~~vpT~~t~r~~~ll~~~l~~~~~vLL~Gp~GtGKT~lv~~~~~~l--~~~~~~~i~~s~~t~~---~~l~~~~~~~~~- 468 (1614)
++=-++.+......++....++.+|||.|++||||-.+++.+-... .+.+++.+||.+--.+ +.+.|.-.+.+.
T Consensus 225 iIG~S~am~~ll~~i~~VA~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPesLlESELFGHeKGAFTG 304 (550)
T COG3604 225 IIGRSPAMRQLLKEIEVVAKSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPESLLESELFGHEKGAFTG 304 (550)
T ss_pred ceecCHHHHHHHHHHHHHhcCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchHHHHHHHhccccccccc
Confidence 3334455667777888889999999999999999998776555432 3678999999865432 334343322111
Q ss_pred eeecCCccccccccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCC----
Q psy568 469 YRKTPNGVILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPT---- 544 (1614)
Q Consensus 469 ~~~~~~g~~~~p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~---- 544 (1614)
-...+.|++--+ . ..-+|+|||---... - --.+||-+.+ |.+- +-++....-.|+++|||+|..-
T Consensus 305 A~~~r~GrFElA--d--GGTLFLDEIGelPL~---l--QaKLLRvLQe-gEie-RvG~~r~ikVDVRiIAATNRDL~~~V 373 (550)
T COG3604 305 AINTRRGRFELA--D--GGTLFLDEIGELPLA---L--QAKLLRVLQE-GEIE-RVGGDRTIKVDVRVIAATNRDLEEMV 373 (550)
T ss_pred chhccCcceeec--C--CCeEechhhccCCHH---H--HHHHHHHHhh-ccee-ecCCCceeEEEEEEEeccchhHHHHH
Confidence 011122443332 1 256888999632111 0 1246776655 3333 3233334445899999999742
Q ss_pred CCCCCCCcccccccccEEEecCC
Q psy568 545 DPGRKPLSHRFLRHVPVIYVDYP 567 (1614)
Q Consensus 545 ~~g~~~l~~r~~r~f~~i~i~~p 567 (1614)
..|++ -..+.-|.+++-+.-|
T Consensus 374 ~~G~F--RaDLYyRLsV~Pl~lP 394 (550)
T COG3604 374 RDGEF--RADLYYRLSVFPLELP 394 (550)
T ss_pred HcCcc--hhhhhhcccccccCCC
Confidence 12322 2334455565544444
No 221
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=97.67 E-value=0.00043 Score=78.39 Aligned_cols=61 Identities=23% Similarity=0.401 Sum_probs=46.3
Q ss_pred ceeeeCcchhhHHHHHHHHHhc----CCCEEEecCCCCchHHHHHHHHhcCC-CCceEEEEcccCC
Q psy568 394 DVVVPTLDTVRHESLLYTWLAE----HKPLVLCGPPGSGKTMTLLSALRALP-DMEVVSLNFSSAT 454 (1614)
Q Consensus 394 ~~~vpT~~t~r~~~ll~~~l~~----~~~vLL~Gp~GtGKT~lv~~~~~~l~-~~~~~~i~~s~~t 454 (1614)
+-+|--....+...++-.|+++ |+.||+.||||||||+++-.+++.+. +.++..++.|.-.
T Consensus 39 dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEiY 104 (450)
T COG1224 39 DGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEIY 104 (450)
T ss_pred CcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCceeeccceee
Confidence 3456666666666777777765 58999999999999999999999985 4566666666543
No 222
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=97.66 E-value=0.0033 Score=79.75 Aligned_cols=130 Identities=17% Similarity=0.253 Sum_probs=78.4
Q ss_pred ccE-EEeecCCCChHHHHHHHHHHcCC------------------------eEEEEEecCCCChhcHHHHHHHHHHHhcc
Q psy568 758 GHL-LLIGVSGAGKTTLSRFVAFMNGL------------------------SVFQIRAHNKYTGADFDEDLRTVLRRSGC 812 (1614)
Q Consensus 758 gh~-LLvG~~GsGKtsl~rlaA~~~~~------------------------~~~~i~~~~~~~~~df~~~lk~~l~~ag~ 812 (1614)
.|+ ||.|+.|+||||+++.+|...++ ++++++-..+.+..+.++-+..+. ....
T Consensus 38 ~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviEIDAas~rgVDdIReLIe~a~-~~P~ 116 (830)
T PRK07003 38 HHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLERAV-YAPV 116 (830)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEEecccccccHHHHHHHHHHHH-hccc
Confidence 455 89999999999999999987665 344444433344444443332222 1123
Q ss_pred CCCcEEEEEcCCcccccchHHHHHHhhccCCCCCCCChhhHHHHHHHhHHHHHHcCCCCCCHHHHHHHHHHHHhhcceEE
Q psy568 813 KNEKIAFLLDESNVLESGFLERMNTLLANGEIPGLFEGDEYTTLMTQCKEGAQREGLMLDSNEELYKWFTQQVMKNLHVV 892 (1614)
Q Consensus 813 ~~~~~v~ll~d~~i~~~~~le~in~lL~~G~v~~Lf~~eE~~~i~~~~~~~~~~~~~~~~s~~~l~~~f~~rv~~nlhiv 892 (1614)
.++.-+++||+.+..+.. ..|.|| + +++.-..+.+||
T Consensus 117 ~gr~KVIIIDEah~LT~~---A~NALL---------------------------------------K-tLEEPP~~v~FI 153 (830)
T PRK07003 117 DARFKVYMIDEVHMLTNH---AFNAML---------------------------------------K-TLEEPPPHVKFI 153 (830)
T ss_pred cCCceEEEEeChhhCCHH---HHHHHH---------------------------------------H-HHHhcCCCeEEE
Confidence 445556777765443221 122222 0 122223477777
Q ss_pred EEECCCChhhHHHhhhCccccccceecccCCCcHHHHHHHHHHhhc
Q psy568 893 FTMNPSSEGLKDRAATSPALFNRCVLNWFGDWSDTALYQVAKEFTS 938 (1614)
Q Consensus 893 l~~sp~~~~~r~~~~~~PaL~~~~~i~wf~~W~~eaL~~va~~~l~ 938 (1614)
|+-+... ..-|.|.++|...-|.+.+.+.+.....+.+.
T Consensus 154 LaTtd~~-------KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~ 192 (830)
T PRK07003 154 LATTDPQ-------KIPVTVLSRCLQFNLKQMPAGHIVSHLERILG 192 (830)
T ss_pred EEECChh-------hccchhhhheEEEecCCcCHHHHHHHHHHHHH
Confidence 7765432 12478999999999999999988877766654
No 223
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=9.2e-05 Score=82.32 Aligned_cols=72 Identities=22% Similarity=0.341 Sum_probs=48.4
Q ss_pred cCCCEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCCH-------HHHHhHhhcccceeecCCccccccccCCceE
Q psy568 415 EHKPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTP-------ELLLKTFDHYCEYRKTPNGVILSPIQLGKWL 487 (1614)
Q Consensus 415 ~~~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~~-------~~l~~~~~~~~~~~~~~~g~~~~p~~~gk~~ 487 (1614)
...++||+||+|||||.+++.+++.+ +.++..-+.+.-|.+ +.+.-.+-+.+++-. - ...+.
T Consensus 96 ~KSNILLiGPTGsGKTlLAqTLAk~L-nVPFaiADATtLTEAGYVGEDVENillkLlqaadydV------~----rAerG 164 (408)
T COG1219 96 SKSNILLIGPTGSGKTLLAQTLAKIL-NVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDV------E----RAERG 164 (408)
T ss_pred eeccEEEECCCCCcHHHHHHHHHHHh-CCCeeeccccchhhccccchhHHHHHHHHHHHcccCH------H----HHhCC
Confidence 46789999999999999998888777 777766666555543 333333333443221 1 23457
Q ss_pred EEEeccCCCC
Q psy568 488 VLFCDEINLP 497 (1614)
Q Consensus 488 vlfiDdin~p 497 (1614)
|+|||||+..
T Consensus 165 IIyIDEIDKI 174 (408)
T COG1219 165 IIYIDEIDKI 174 (408)
T ss_pred eEEEechhhh
Confidence 8999999953
No 224
>PRK13342 recombination factor protein RarA; Reviewed
Probab=97.65 E-value=0.00037 Score=86.21 Aligned_cols=130 Identities=19% Similarity=0.257 Sum_probs=80.3
Q ss_pred ccEEEeecCCCChHHHHHHHHHHcCCeEEEEEecCCCChhcHHHHHHHHHHHhccCCCcEEEEEcCCcccccchHHHHHH
Q psy568 758 GHLLLIGVSGAGKTTLSRFVAFMNGLSVFQIRAHNKYTGADFDEDLRTVLRRSGCKNEKIAFLLDESNVLESGFLERMNT 837 (1614)
Q Consensus 758 gh~LLvG~~GsGKtsl~rlaA~~~~~~~~~i~~~~~~~~~df~~~lk~~l~~ag~~~~~~v~ll~d~~i~~~~~le~in~ 837 (1614)
.|++|+||+|+|||++++.+|...+..+..++... .+..+.++-+..+... ...+++.++++||.+-...
T Consensus 37 ~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~-~~~~~ir~ii~~~~~~-~~~g~~~vL~IDEi~~l~~-------- 106 (413)
T PRK13342 37 SSMILWGPPGTGKTTLARIIAGATDAPFEALSAVT-SGVKDLREVIEEARQR-RSAGRRTILFIDEIHRFNK-------- 106 (413)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccc-ccHHHHHHHHHHHHHh-hhcCCceEEEEechhhhCH--------
Confidence 47999999999999999999999999988887542 2333333322222211 2345678888888543211
Q ss_pred hhccCCCCCCCChhhHHHHHHHhHHHHHHcCCCCCCHHHHHHHHHHHHhhcceEEEEECCCChhhHHHhhhCccccccce
Q psy568 838 LLANGEIPGLFEGDEYTTLMTQCKEGAQREGLMLDSNEELYKWFTQQVMKNLHVVFTMNPSSEGLKDRAATSPALFNRCV 917 (1614)
Q Consensus 838 lL~~G~v~~Lf~~eE~~~i~~~~~~~~~~~~~~~~s~~~l~~~f~~rv~~nlhivl~~sp~~~~~r~~~~~~PaL~~~~~ 917 (1614)
+..+.+... +. +-++++......+. .....|+|.++|.
T Consensus 107 -------------~~q~~LL~~-------------------------le-~~~iilI~att~n~---~~~l~~aL~SR~~ 144 (413)
T PRK13342 107 -------------AQQDALLPH-------------------------VE-DGTITLIGATTENP---SFEVNPALLSRAQ 144 (413)
T ss_pred -------------HHHHHHHHH-------------------------hh-cCcEEEEEeCCCCh---hhhccHHHhccce
Confidence 111111111 11 11233332221111 1235689999999
Q ss_pred ecccCCCcHHHHHHHHHHhhcc
Q psy568 918 LNWFGDWSDTALYQVAKEFTSK 939 (1614)
Q Consensus 918 i~wf~~W~~eaL~~va~~~l~~ 939 (1614)
+..|.+.+.+.+..+..+.+..
T Consensus 145 ~~~~~~ls~e~i~~lL~~~l~~ 166 (413)
T PRK13342 145 VFELKPLSEEDIEQLLKRALED 166 (413)
T ss_pred eeEeCCCCHHHHHHHHHHHHHH
Confidence 9999999999999988887764
No 225
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=97.64 E-value=0.00014 Score=91.94 Aligned_cols=142 Identities=12% Similarity=0.015 Sum_probs=99.9
Q ss_pred CCEEEecCCCCchHHHHHHHHhcCCC-CceEEEEcccCCCHHHHHhHhhc--ccc--eeecCCccccccccCCceEEEEe
Q psy568 417 KPLVLCGPPGSGKTMTLLSALRALPD-MEVVSLNFSSATTPELLLKTFDH--YCE--YRKTPNGVILSPIQLGKWLVLFC 491 (1614)
Q Consensus 417 ~~vLL~Gp~GtGKT~lv~~~~~~l~~-~~~~~i~~s~~t~~~~l~~~~~~--~~~--~~~~~~g~~~~p~~~gk~~vlfi 491 (1614)
..|+|.|+.|+|||++++.+..-++. .+++.++. ..+...+.|.++- .+. ......|.+..+ ...|+|+
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~--~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~A----h~GvL~l 99 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPP--GIADDRLLGGLDLAATLRAGRPVAQRGLLAEA----DGGVLVL 99 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCC--CCcHHHccCCchHHhHhhcCCcCCCCCceeec----cCCEEEe
Confidence 36999999999999999888887765 35555544 4455556665421 111 000123444333 3478999
Q ss_pred ccCCCCCccccCcccHHHHHHHHHHcCceeeC-CCCceEeecCeEEEEeecCCCCCCCCCCccccccccc-EEEecCCCh
Q psy568 492 DEINLPDMDKYATQRVISFLRQLIEQRGFYRP-ADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLRHVP-VIYVDYPGE 569 (1614)
Q Consensus 492 Ddin~p~~d~~g~q~~lelLrqlld~~~~~~~-~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r~f~-~i~i~~p~~ 569 (1614)
||+|+ .+..+++.|++-++.|.+... .+..+....+|.+||+.|+.. ....|++.++.||- .+.+++|+.
T Consensus 100 De~n~------~~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~--~~~~L~~~lLDRf~l~v~v~~~~~ 171 (584)
T PRK13406 100 AMAER------LEPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAE--EDERAPAALADRLAFHLDLDGLAL 171 (584)
T ss_pred cCccc------CCHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChh--cccCCCHHhHhheEEEEEcCCCCh
Confidence 99999 666799999999999987764 444555556899999977642 23679999999999 578888876
Q ss_pred hHH
Q psy568 570 TSL 572 (1614)
Q Consensus 570 ~~l 572 (1614)
.+.
T Consensus 172 ~~~ 174 (584)
T PRK13406 172 RDA 174 (584)
T ss_pred HHh
Confidence 654
No 226
>PRK04132 replication factor C small subunit; Provisional
Probab=97.64 E-value=0.0002 Score=93.25 Aligned_cols=132 Identities=16% Similarity=0.238 Sum_probs=96.4
Q ss_pred CEEEec--CCCCchHHHHHHHHhcCC----CCceEEEEcccCCCHHHHHhHhhcccceeecCCccccccccCCceEEEEe
Q psy568 418 PLVLCG--PPGSGKTMTLLSALRALP----DMEVVSLNFSSATTPELLLKTFDHYCEYRKTPNGVILSPIQLGKWLVLFC 491 (1614)
Q Consensus 418 ~vLL~G--p~GtGKT~lv~~~~~~l~----~~~~~~i~~s~~t~~~~l~~~~~~~~~~~~~~~g~~~~p~~~gk~~vlfi 491 (1614)
+-+..| |.+.||||++..+++.+. +.+++.+|.|...+.+.++..+...... .|...+++-|++|
T Consensus 566 ~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid~IR~iIk~~a~~---------~~~~~~~~KVvII 636 (846)
T PRK04132 566 HNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFART---------KPIGGASFKIIFL 636 (846)
T ss_pred hhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHHHHHHHHHHHHhc---------CCcCCCCCEEEEE
Confidence 334556 888899999998888763 3467889998877888888777543321 1221124467888
Q ss_pred ccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCCCcccccccccEEEecCCChhH
Q psy568 492 DEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLRHVPVIYVDYPGETS 571 (1614)
Q Consensus 492 Ddin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r~f~~i~i~~p~~~~ 571 (1614)
||+|.- +......|+..++. |. .++.||.+||++. .+.+.+.+||.++.+..|+.++
T Consensus 637 DEaD~L------t~~AQnALLk~lEe---p~---------~~~~FILi~N~~~-----kIi~tIrSRC~~i~F~~ls~~~ 693 (846)
T PRK04132 637 DEADAL------TQDAQQALRRTMEM---FS---------SNVRFILSCNYSS-----KIIEPIQSRCAIFRFRPLRDED 693 (846)
T ss_pred ECcccC------CHHHHHHHHHHhhC---CC---------CCeEEEEEeCChh-----hCchHHhhhceEEeCCCCCHHH
Confidence 999994 34456677888874 11 2578999999875 6888899999999999999999
Q ss_pred HHHHHHHHHH
Q psy568 572 LKQIYGTFSR 581 (1614)
Q Consensus 572 l~~I~~~~~~ 581 (1614)
+..++..++.
T Consensus 694 i~~~L~~I~~ 703 (846)
T PRK04132 694 IAKRLRYIAE 703 (846)
T ss_pred HHHHHHHHHH
Confidence 9888776654
No 227
>KOG0480|consensus
Probab=97.64 E-value=0.00032 Score=84.78 Aligned_cols=207 Identities=15% Similarity=0.160 Sum_probs=113.6
Q ss_pred HhcCCCEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCCHHHHHhHhh--cccceeecCCccccccccCCceEEEE
Q psy568 413 LAEHKPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTPELLLKTFD--HYCEYRKTPNGVILSPIQLGKWLVLF 490 (1614)
Q Consensus 413 l~~~~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~~~~l~~~~~--~~~~~~~~~~g~~~~p~~~gk~~vlf 490 (1614)
+....||+++|.||+|||.++++...-+|...+. ...+.+.+ -|-..+- +....-....|.+.-+ ...|..
T Consensus 375 lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vYt--sGkaSSaA-GLTaaVvkD~esgdf~iEAGALmLA----DnGICC 447 (764)
T KOG0480|consen 375 LRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVYT--SGKASSAA-GLTAAVVKDEESGDFTIEAGALMLA----DNGICC 447 (764)
T ss_pred ccCCceEEEeCCCCccHHHHHHHHhccCCcceEe--cCcccccc-cceEEEEecCCCCceeeecCcEEEc----cCceEE
Confidence 3456799999999999999999888766543222 22222222 1211110 0000000112433332 234566
Q ss_pred eccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEee-cCeEEEEeecCCCCC--------CCCCCcccccccccE
Q psy568 491 CDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSL-ERIQCVGACNPPTDP--------GRKPLSHRFLRHVPV 561 (1614)
Q Consensus 491 iDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~-~~~~~iaa~n~~~~~--------g~~~l~~r~~r~f~~ 561 (1614)
|||++.-.. .-.-.|-.-|+...+-..+.+..-.+ ....++||.||-++. ..-.+++.+++||-.
T Consensus 448 IDEFDKMd~------~dqvAihEAMEQQtISIaKAGv~aTLnARtSIlAAANPv~GhYdR~ktl~eNi~msApimSRFDL 521 (764)
T KOG0480|consen 448 IDEFDKMDV------KDQVAIHEAMEQQTISIAKAGVVATLNARTSILAAANPVGGHYDRKKTLRENINMSAPIMSRFDL 521 (764)
T ss_pred echhcccCh------HhHHHHHHHHHhheehheecceEEeecchhhhhhhcCCcCCccccccchhhhcCCCchhhhhhcE
Confidence 699996222 11123345556666555444444444 368899999998621 113468899999985
Q ss_pred E--EecCCChhHHHHHHHHHHHhhhhcchh-----------hh-----------hhHHHHHHHHHHHHHHHHhhcCC-CC
Q psy568 562 I--YVDYPGETSLKQIYGTFSRAMLRLIPP-----------LR-----------GYADALTNAMVELYLASQEKFTQ-DM 616 (1614)
Q Consensus 562 i--~i~~p~~~~l~~I~~~~~~~~~~~~~~-----------~~-----------~~~~~l~~~~~~~~~~~~~~~~~-~~ 616 (1614)
+ -++.|++..=..|-+.++..+...... ++ .+.......+++.|..++..-.. ..
T Consensus 522 ~FiLlD~~nE~~D~~ia~hIld~h~~i~~~~~~~~~~~~e~vrkYi~yAR~~~P~ls~ea~~~lve~Y~~lR~~~~~~~~ 601 (764)
T KOG0480|consen 522 FFILLDDCNEVVDYAIARHILDLHRGIDDATERVCVYTLEQVRKYIRYARNFKPKLSKEASEMLVEKYKGLRQRDAQGNN 601 (764)
T ss_pred EEEEecCCchHHHHHHHHHHHHHhccccccccccccccHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHhhccccC
Confidence 4 568888877777776666655321111 11 11223344556666666554422 23
Q ss_pred CCccccChhhHHHHhh
Q psy568 617 QPHYVYSPREMTRWVR 632 (1614)
Q Consensus 617 ~~hY~F~lRdl~~v~~ 632 (1614)
++-|..+.|+|...++
T Consensus 602 ~~s~~ITvRqLESlIR 617 (764)
T KOG0480|consen 602 RSSYRITVRQLESLIR 617 (764)
T ss_pred cccccccHHHHHHHHH
Confidence 4567778887766554
No 228
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.62 E-value=0.00032 Score=85.53 Aligned_cols=133 Identities=17% Similarity=0.210 Sum_probs=75.7
Q ss_pred HHHhccCC-cc-EEEeecCCCChHHHHHHHHHHcCCe------------------------EEEEEecCCCChhcHHHHH
Q psy568 750 DRIFRQPQ-GH-LLLIGVSGAGKTTLSRFVAFMNGLS------------------------VFQIRAHNKYTGADFDEDL 803 (1614)
Q Consensus 750 ~Ril~~p~-gh-~LLvG~~GsGKtsl~rlaA~~~~~~------------------------~~~i~~~~~~~~~df~~~l 803 (1614)
.+.+...+ +| +||.||+|+||||+++.+|...++. +++++...+.+..+.++-.
T Consensus 31 ~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~dviEIdaas~~gVd~IReL~ 110 (484)
T PRK14956 31 QNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGISSDVLEIDAASNRGIENIRELR 110 (484)
T ss_pred HHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHccCCccceeechhhcccHHHHHHHH
Confidence 33334333 56 6999999999999999999887663 5555544444555544422
Q ss_pred HHHHHHhccCCCcEEEEEcCCcccccchHHHHHHhhcc--CCCCCCCChhhHHHHHHHhHHHHHHcCCCCCCHHHHHHHH
Q psy568 804 RTVLRRSGCKNEKIAFLLDESNVLESGFLERMNTLLAN--GEIPGLFEGDEYTTLMTQCKEGAQREGLMLDSNEELYKWF 881 (1614)
Q Consensus 804 k~~l~~ag~~~~~~v~ll~d~~i~~~~~le~in~lL~~--G~v~~Lf~~eE~~~i~~~~~~~~~~~~~~~~s~~~l~~~f 881 (1614)
.. +......++..|+++|+.+-.+....+.+-..|.. +.+-=++...+...|...++..++.-.....+.+++.++.
T Consensus 111 e~-l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SRCq~~~f~~ls~~~i~~~L 189 (484)
T PRK14956 111 DN-VKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSRCQDFIFKKVPLSVLQDYS 189 (484)
T ss_pred HH-HHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHhhhheeeecCCCHHHHHHHH
Confidence 22 22233456778999999887776544433333332 3333345566666666555555443322223444444444
Q ss_pred HH
Q psy568 882 TQ 883 (1614)
Q Consensus 882 ~~ 883 (1614)
..
T Consensus 190 ~~ 191 (484)
T PRK14956 190 EK 191 (484)
T ss_pred HH
Confidence 33
No 229
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.62 E-value=0.00036 Score=81.90 Aligned_cols=88 Identities=14% Similarity=0.041 Sum_probs=54.3
Q ss_pred EEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCC--CCCcccccccccEEEe
Q psy568 487 LVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGR--KPLSHRFLRHVPVIYV 564 (1614)
Q Consensus 487 ~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~--~~l~~r~~r~f~~i~i 564 (1614)
.|+-++|+.....+ .+--|...++.+.+..++... ...-+..|||++|+.....+ .....+|++|+..+.+
T Consensus 238 Gi~~f~Ei~K~~~~------~l~~LL~~~qE~~v~~~~~~~-~~~~d~liia~sNe~e~~~~~~~k~~eaf~dR~~~i~v 310 (361)
T smart00763 238 GILEFVEMFKADIK------FLHPLLTATQEGNIKGTGGFA-MIPIDGLIIAHSNESEWQRFKSNKKNEALLDRIIKVKV 310 (361)
T ss_pred ceEEEeehhcCCHH------HHHHHhhhhhcceEecCCccc-ccccceEEEEeCCHHHHhhhhccccchhhhhceEEEeC
Confidence 44555565552222 333444555666665443222 12235689999999752221 2347999999999999
Q ss_pred cCCCh-hHHHHHHHHHHH
Q psy568 565 DYPGE-TSLKQIYGTFSR 581 (1614)
Q Consensus 565 ~~p~~-~~l~~I~~~~~~ 581 (1614)
++|.. ++-.+||...+.
T Consensus 311 pY~l~~~~E~~Iy~k~~~ 328 (361)
T smart00763 311 PYCLRVSEEAQIYEKLLR 328 (361)
T ss_pred CCcCCHHHHHHHHHHHhc
Confidence 99965 667788887765
No 230
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.61 E-value=0.00025 Score=77.06 Aligned_cols=82 Identities=27% Similarity=0.339 Sum_probs=54.7
Q ss_pred CCccEEEeecCCCChHHHHHHHHHHcCCeEEEEEecCCCChhcHHHHHHHHHHHhccCCCcEEEEEcCCcccccchHHHH
Q psy568 756 PQGHLLLIGVSGAGKTTLSRFVAFMNGLSVFQIRAHNKYTGADFDEDLRTVLRRSGCKNEKIAFLLDESNVLESGFLERM 835 (1614)
Q Consensus 756 p~gh~LLvG~~GsGKtsl~rlaA~~~~~~~~~i~~~~~~~~~df~~~lk~~l~~ag~~~~~~v~ll~d~~i~~~~~le~i 835 (1614)
+-.|+||+||||+|||||+++.|.-+|.++...+-.. +. =..|+..++... +++.++++||-+=.+...-|.+
T Consensus 49 ~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~---i~-k~~dl~~il~~l---~~~~ILFIDEIHRlnk~~qe~L 121 (233)
T PF05496_consen 49 ALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPA---IE-KAGDLAAILTNL---KEGDILFIDEIHRLNKAQQEIL 121 (233)
T ss_dssp ---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC------SCHHHHHHHHT-----TT-EEEECTCCC--HHHHHHH
T ss_pred CcceEEEECCCccchhHHHHHHHhccCCCeEeccchh---hh-hHHHHHHHHHhc---CCCcEEEEechhhccHHHHHHH
Confidence 4569999999999999999999999999987654321 11 125666666543 3566888899887777777888
Q ss_pred HHhhccCCC
Q psy568 836 NTLLANGEI 844 (1614)
Q Consensus 836 n~lL~~G~v 844 (1614)
-..|.+|.+
T Consensus 122 lpamEd~~i 130 (233)
T PF05496_consen 122 LPAMEDGKI 130 (233)
T ss_dssp HHHHHCSEE
T ss_pred HHHhccCeE
Confidence 888877754
No 231
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=97.58 E-value=0.00069 Score=81.01 Aligned_cols=150 Identities=15% Similarity=0.150 Sum_probs=82.0
Q ss_pred HHHHHHHHhcCC---CEEEecCCCCchHHHHHHHHhcCCCCc-----eEE--EEcccCCCHHHHHhH-------hhccc-
Q psy568 406 ESLLYTWLAEHK---PLVLCGPPGSGKTMTLLSALRALPDME-----VVS--LNFSSATTPELLLKT-------FDHYC- 467 (1614)
Q Consensus 406 ~~ll~~~l~~~~---~vLL~Gp~GtGKT~lv~~~~~~l~~~~-----~~~--i~~s~~t~~~~l~~~-------~~~~~- 467 (1614)
...+..++..|+ .+||+||+|+|||+++..+++.+.... ... ..|........+... +....
T Consensus 32 ~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~~i~~~~hPdl~~l~~~~~ 111 (351)
T PRK09112 32 EAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWRQIAQGAHPNLLHITRPFD 111 (351)
T ss_pred HHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHHHHHcCCCCCEEEeecccc
Confidence 345556666665 599999999999999999998764311 000 011000000011000 00000
Q ss_pred cee---ec---------CCccccccccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeE
Q psy568 468 EYR---KT---------PNGVILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQ 535 (1614)
Q Consensus 468 ~~~---~~---------~~g~~~~p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~ 535 (1614)
++. .. -...+......|++-|++|||++.-.. ...+.|.-.++.. + .+..
T Consensus 112 ~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~------~aanaLLk~LEEp----p--------~~~~ 173 (351)
T PRK09112 112 EKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNR------NAANAILKTLEEP----P--------ARAL 173 (351)
T ss_pred cccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCH------HHHHHHHHHHhcC----C--------CCce
Confidence 000 00 000111112356778899999998433 2334444555531 1 1334
Q ss_pred EEEeecCCCCCCCCCCcccccccccEEEecCCChhHHHHHHHH
Q psy568 536 CVGACNPPTDPGRKPLSHRFLRHVPVIYVDYPGETSLKQIYGT 578 (1614)
Q Consensus 536 ~iaa~n~~~~~g~~~l~~r~~r~f~~i~i~~p~~~~l~~I~~~ 578 (1614)
||..++.++ .+.+.+.+|+..+.++.|+.+++..++..
T Consensus 174 fiLit~~~~-----~llptIrSRc~~i~l~pl~~~~~~~~L~~ 211 (351)
T PRK09112 174 FILISHSSG-----RLLPTIRSRCQPISLKPLDDDELKKALSH 211 (351)
T ss_pred EEEEECChh-----hccHHHHhhccEEEecCCCHHHHHHHHHH
Confidence 444444443 46688899999999999999999988765
No 232
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.57 E-value=0.00057 Score=87.98 Aligned_cols=140 Identities=16% Similarity=0.216 Sum_probs=85.8
Q ss_pred HHHHHHhcC---CCEEEecCCCCchHHHHHHHHhcCCCC------------------------ceEEEEcccCCCHHHHH
Q psy568 408 LLYTWLAEH---KPLVLCGPPGSGKTMTLLSALRALPDM------------------------EVVSLNFSSATTPELLL 460 (1614)
Q Consensus 408 ll~~~l~~~---~~vLL~Gp~GtGKT~lv~~~~~~l~~~------------------------~~~~i~~s~~t~~~~l~ 460 (1614)
.+..++..| +.+||+||+|+|||++++.+++.+... .++.++-+.....+++.
T Consensus 27 ~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~~~~~~d~~~i~~~~~~~vd~ir 106 (585)
T PRK14950 27 TLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIAEGSAVDVIEMDAASHTSVDDAR 106 (585)
T ss_pred HHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHhcCCCCeEEEEeccccCCHHHHH
Confidence 344555544 346999999999999999998765210 12233333344455554
Q ss_pred hHhhcccceeecCCccccccccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEee
Q psy568 461 KTFDHYCEYRKTPNGVILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGAC 540 (1614)
Q Consensus 461 ~~~~~~~~~~~~~~g~~~~p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~ 540 (1614)
..++ .+. ..|. .+.+-|++|||+++-. ...++.|...++... +++.||.++
T Consensus 107 ~ii~-~~~---------~~p~-~~~~kVvIIDEa~~L~------~~a~naLLk~LEepp------------~~tv~Il~t 157 (585)
T PRK14950 107 EIIE-RVQ---------FRPA-LARYKVYIIDEVHMLS------TAAFNALLKTLEEPP------------PHAIFILAT 157 (585)
T ss_pred HHHH-HHh---------hCcc-cCCeEEEEEeChHhCC------HHHHHHHHHHHhcCC------------CCeEEEEEe
Confidence 4332 111 2232 2456678899998733 234444555555411 245556555
Q ss_pred cCCCCCCCCCCcccccccccEEEecCCChhHHHHHHHHHHH
Q psy568 541 NPPTDPGRKPLSHRFLRHVPVIYVDYPGETSLKQIYGTFSR 581 (1614)
Q Consensus 541 n~~~~~g~~~l~~r~~r~f~~i~i~~p~~~~l~~I~~~~~~ 581 (1614)
+.. ..+.+.+.+|+..+.+..++.+++..++..++.
T Consensus 158 ~~~-----~kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~ 193 (585)
T PRK14950 158 TEV-----HKVPATILSRCQRFDFHRHSVADMAAHLRKIAA 193 (585)
T ss_pred CCh-----hhhhHHHHhccceeeCCCCCHHHHHHHHHHHHH
Confidence 432 347778899999999999999998888766554
No 233
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.56 E-value=0.00047 Score=74.18 Aligned_cols=96 Identities=19% Similarity=0.328 Sum_probs=64.1
Q ss_pred CCEEEecCCCCchHHHHHHHHhcCCC--CceEEEEcccCCCHHHHHhHhhcccceeecCCccccccccCCceEEEEeccC
Q psy568 417 KPLVLCGPPGSGKTMTLLSALRALPD--MEVVSLNFSSATTPELLLKTFDHYCEYRKTPNGVILSPIQLGKWLVLFCDEI 494 (1614)
Q Consensus 417 ~~vLL~Gp~GtGKT~lv~~~~~~l~~--~~~~~i~~s~~t~~~~l~~~~~~~~~~~~~~~g~~~~p~~~gk~~vlfiDdi 494 (1614)
.+|||.|..|+|||++++.++....+ ..++.++=+.-.+--.+.+.+. + ...++|+|+||+
T Consensus 86 NnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl~~Lp~l~~~Lr----------~-------~~~kFIlFcDDL 148 (287)
T COG2607 86 NNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDLATLPDLVELLR----------A-------RPEKFILFCDDL 148 (287)
T ss_pred cceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHHhhHHHHHHHHh----------c-------CCceEEEEecCC
Confidence 68999999999999999999987643 3345554333333333333331 1 246799999999
Q ss_pred CCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecC
Q psy568 495 NLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNP 542 (1614)
Q Consensus 495 n~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~ 542 (1614)
..-.-| .....|...+|.| +-. ...|+.|-||+|.
T Consensus 149 SFe~gd-----~~yK~LKs~LeG~-ve~-------rP~NVl~YATSNR 183 (287)
T COG2607 149 SFEEGD-----DAYKALKSALEGG-VEG-------RPANVLFYATSNR 183 (287)
T ss_pred CCCCCc-----hHHHHHHHHhcCC-ccc-------CCCeEEEEEecCC
Confidence 984444 3567888888843 222 2247888888874
No 234
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.55 E-value=0.00014 Score=75.20 Aligned_cols=40 Identities=28% Similarity=0.399 Sum_probs=32.1
Q ss_pred CCCEEEecCCCCchHHHHHHHHhcCCCC--ceEEEEcccCCC
Q psy568 416 HKPLVLCGPPGSGKTMTLLSALRALPDM--EVVSLNFSSATT 455 (1614)
Q Consensus 416 ~~~vLL~Gp~GtGKT~lv~~~~~~l~~~--~~~~i~~s~~t~ 455 (1614)
+.+++|+||||||||++++.++..+... .++.++.+....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~ 43 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILE 43 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccc
Confidence 5789999999999999999999988655 467776665443
No 235
>PF05729 NACHT: NACHT domain
Probab=97.55 E-value=0.00016 Score=77.42 Aligned_cols=150 Identities=17% Similarity=0.226 Sum_probs=85.9
Q ss_pred CCEEEecCCCCchHHHHHHHHhcCCCC-------ce-EEEEcccCCCHH---HHHhHhhcccceeecCCcc-ccccccCC
Q psy568 417 KPLVLCGPPGSGKTMTLLSALRALPDM-------EV-VSLNFSSATTPE---LLLKTFDHYCEYRKTPNGV-ILSPIQLG 484 (1614)
Q Consensus 417 ~~vLL~Gp~GtGKT~lv~~~~~~l~~~-------~~-~~i~~s~~t~~~---~l~~~~~~~~~~~~~~~g~-~~~p~~~g 484 (1614)
+.++|+|++|+|||+++..++..+... .+ +.+++....... .+...+............. ...-...+
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKN 80 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcC
Confidence 358999999999999999988654221 12 233333222211 2333332222111100000 00011235
Q ss_pred ceEEEEeccCCCCCccc--cCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCCCcccccccccEE
Q psy568 485 KWLVLFCDEINLPDMDK--YATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLRHVPVI 562 (1614)
Q Consensus 485 k~~vlfiDdin~p~~d~--~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r~f~~i 562 (1614)
++++++||.+|-...+. .+.++..++|.+++.... .+++.++.|+.|.. ... -.+.......+
T Consensus 81 ~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~-----------~~~~~liit~r~~~---~~~-~~~~~~~~~~~ 145 (166)
T PF05729_consen 81 KRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQAL-----------PPGVKLIITSRPRA---FPD-LRRRLKQAQIL 145 (166)
T ss_pred CceEEEEechHhcccchhhhHHHHHHHHHHHHhhhcc-----------CCCCeEEEEEcCCh---HHH-HHHhcCCCcEE
Confidence 67889999999755532 134567788888886421 13577888887653 111 23333444778
Q ss_pred EecCCChhHHHHHHHHHHH
Q psy568 563 YVDYPGETSLKQIYGTFSR 581 (1614)
Q Consensus 563 ~i~~p~~~~l~~I~~~~~~ 581 (1614)
.++..+.+++...+..+++
T Consensus 146 ~l~~~~~~~~~~~~~~~f~ 164 (166)
T PF05729_consen 146 ELEPFSEEDIKQYLRKYFS 164 (166)
T ss_pred EECCCCHHHHHHHHHHHhh
Confidence 9999999999998877654
No 236
>KOG0478|consensus
Probab=97.55 E-value=0.0017 Score=79.38 Aligned_cols=151 Identities=22% Similarity=0.285 Sum_probs=87.0
Q ss_pred CCEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCCHHHHHhHhhcccceee--cCCccccccccCCceEEEEeccC
Q psy568 417 KPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTPELLLKTFDHYCEYRK--TPNGVILSPIQLGKWLVLFCDEI 494 (1614)
Q Consensus 417 ~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~~~~l~~~~~~~~~~~~--~~~g~~~~p~~~gk~~vlfiDdi 494 (1614)
.||||+|.||+|||.+++.+.+-.+...+.. ...+++.-+...+..--+-+. -..|.++-. .| .+..|||+
T Consensus 463 INILL~GDPGtsKSqlLqyv~~l~pRg~yTS---GkGsSavGLTayVtrd~dtkqlVLesGALVLS--D~--GiCCIDEF 535 (804)
T KOG0478|consen 463 INILLVGDPGTSKSQLLQYCHRLLPRGVYTS---GKGSSAVGLTAYVTKDPDTRQLVLESGALVLS--DN--GICCIDEF 535 (804)
T ss_pred ceEEEecCCCcCHHHHHHHHHHhCCcceeec---CCccchhcceeeEEecCccceeeeecCcEEEc--CC--ceEEchhh
Confidence 7999999999999999887776553222111 011111111111100000000 012444433 23 34445999
Q ss_pred CCCCccccCcccHHHHHHHHHHcCceeeCCCCceEee-cCeEEEEeecCCCC---CC-----CCCCcccccccccEEEe-
Q psy568 495 NLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSL-ERIQCVGACNPPTD---PG-----RKPLSHRFLRHVPVIYV- 564 (1614)
Q Consensus 495 n~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~-~~~~~iaa~n~~~~---~g-----~~~l~~r~~r~f~~i~i- 564 (1614)
|. -+...-..|.++|+...+-..+-+-+..+ ....++||+||.++ .+ .-.||+-|++||.+|++
T Consensus 536 DK------M~dStrSvLhEvMEQQTvSIAKAGII~sLNAR~SVLAaANP~~skynp~k~i~eNI~LpptLLSRFDLIyll 609 (804)
T KOG0478|consen 536 DK------MSDSTRSVLHEVMEQQTLSIAKAGIIASLNARCSVLAAANPIRSKYNPNKSIIENINLPPTLLSRFDLIFLL 609 (804)
T ss_pred hh------hhHHHHHHHHHHHHHhhhhHhhcceeeeccccceeeeeeccccccCCCCCchhhccCCChhhhhhhcEEEEE
Confidence 97 44445677888999877666655555544 36889999999762 11 13579999999997654
Q ss_pred -cCCChhHHHHHHHHHH
Q psy568 565 -DYPGETSLKQIYGTFS 580 (1614)
Q Consensus 565 -~~p~~~~l~~I~~~~~ 580 (1614)
+.|++..=+.+-..+.
T Consensus 610 lD~~DE~~Dr~La~Hiv 626 (804)
T KOG0478|consen 610 LDKPDERSDRRLADHIV 626 (804)
T ss_pred ecCcchhHHHHHHHHHH
Confidence 5666553344444433
No 237
>KOG0994|consensus
Probab=97.54 E-value=0.63 Score=60.21 Aligned_cols=26 Identities=15% Similarity=0.322 Sum_probs=19.4
Q ss_pred hhHHHhhcCCC----CcHHHHHHHHHHHHh
Q psy568 1130 QQLVELRSMAN----PPSVVKLALESICLL 1155 (1614)
Q Consensus 1130 ~dl~Eirs~~~----PP~~V~~v~eavc~L 1155 (1614)
+-|.+||-|-+ -|+.++.|.+.|+-|
T Consensus 1475 ~Li~~v~~Flt~~~adp~si~~vA~~vL~l 1504 (1758)
T KOG0994|consen 1475 NLIQQVRDFLTQPDADPDSIEEVAEEVLAL 1504 (1758)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Confidence 44677776644 678899999998776
No 238
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=97.53 E-value=0.001 Score=83.81 Aligned_cols=205 Identities=16% Similarity=0.180 Sum_probs=114.8
Q ss_pred HHHHHHHHhcCCCEEEecCCCCchHHHHHHHHhcC--CCCceEEEEcccCCCHHHHHhHhhcccc-----eeecCCcccc
Q psy568 406 ESLLYTWLAEHKPLVLCGPPGSGKTMTLLSALRAL--PDMEVVSLNFSSATTPELLLKTFDHYCE-----YRKTPNGVIL 478 (1614)
Q Consensus 406 ~~ll~~~l~~~~~vLL~Gp~GtGKT~lv~~~~~~l--~~~~~~~i~~s~~t~~~~l~~~~~~~~~-----~~~~~~g~~~ 478 (1614)
...+..+...+.++++.|++|+||+++++.+-... .+.+++.++|+.... +.+...+.+.-. ......|.+.
T Consensus 152 ~~~i~~~~~~~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~-~~~~~~lfg~~~~~~~~~~~~~~g~~~ 230 (441)
T PRK10365 152 LSEIALVAPSEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNE-SLLESELFGHEKGAFTGADKRREGRFV 230 (441)
T ss_pred HHHHhhccCCCCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCH-HHHHHHhcCCCCCCcCCCCcCCCCcee
Confidence 33444555678999999999999999887766443 346799999986543 444333322100 0000123333
Q ss_pred ccccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCC--CCCCCCccccc
Q psy568 479 SPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTD--PGRKPLSHRFL 556 (1614)
Q Consensus 479 ~p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~--~g~~~l~~r~~ 556 (1614)
.+ ...++|||||+.-. ......|..+++.+.+...+... ....++++|+|++.+.. .....+.++|.
T Consensus 231 ~a----~~gtl~ldei~~l~------~~~q~~l~~~l~~~~~~~~~~~~-~~~~~~rii~~t~~~~~~~~~~~~~~~~l~ 299 (441)
T PRK10365 231 EA----DGGTLFLDEIGDIS------PMMQVRLLRAIQEREVQRVGSNQ-TISVDVRLIAATHRDLAAEVNAGRFRQDLY 299 (441)
T ss_pred EC----CCCEEEEeccccCC------HHHHHHHHHHHccCcEEeCCCCc-eeeeceEEEEeCCCCHHHHHHcCCchHHHH
Confidence 22 23568889999833 33556666777777655433322 22347899998876521 11234667777
Q ss_pred ccccEEEecCCChh----HHHHHHHHHHHhhhhcc-hhhhhhHHHHHHHHHHHHHHHHhhcCCCCCCccccChhhHHHHh
Q psy568 557 RHVPVIYVDYPGET----SLKQIYGTFSRAMLRLI-PPLRGYADALTNAMVELYLASQEKFTQDMQPHYVYSPREMTRWV 631 (1614)
Q Consensus 557 r~f~~i~i~~p~~~----~l~~I~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~hY~F~lRdl~~v~ 631 (1614)
.++..+.+..|.-. ++..+...++..+.... .....+. ...++.. . .-+|.-|+|+|.+++
T Consensus 300 ~~l~~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~----~~a~~~L---~-------~~~wpgN~reL~~~~ 365 (441)
T PRK10365 300 YRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFT----PQAMDLL---I-------HYDWPGNIRELENAV 365 (441)
T ss_pred HHhccceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcC----HHHHHHH---H-------hCCCCCHHHHHHHHH
Confidence 78887777766644 44455444444322100 0011111 1111111 0 013455999999999
Q ss_pred hhhhc
Q psy568 632 RGICE 636 (1614)
Q Consensus 632 ~~i~~ 636 (1614)
+..+.
T Consensus 366 ~~~~~ 370 (441)
T PRK10365 366 ERAVV 370 (441)
T ss_pred HHHHH
Confidence 98664
No 239
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.53 E-value=0.00058 Score=85.51 Aligned_cols=124 Identities=21% Similarity=0.225 Sum_probs=72.4
Q ss_pred EEEeecCCCChHHHHHHHHHHcCC------------------------eEEEEEecCCCChhcHHHHHHHHHHHhccCCC
Q psy568 760 LLLIGVSGAGKTTLSRFVAFMNGL------------------------SVFQIRAHNKYTGADFDEDLRTVLRRSGCKNE 815 (1614)
Q Consensus 760 ~LLvG~~GsGKtsl~rlaA~~~~~------------------------~~~~i~~~~~~~~~df~~~lk~~l~~ag~~~~ 815 (1614)
+||.||+|+||||++|.+|...++ ++++++.....+..++++-+..+ ......++
T Consensus 40 yLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviEIDAAs~~~VddIReli~~~-~y~P~~gk 118 (702)
T PRK14960 40 YLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIEIDAASRTKVEDTRELLDNV-PYAPTQGR 118 (702)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHH-hhhhhcCC
Confidence 599999999999999999987665 45666555444555555433322 22234566
Q ss_pred cEEEEEcCCcccccchHHHHHHhhcc--CCCCCCCChhhHHHHHHHhHHHHHHcCCCCCCHHHHHHHHHHH
Q psy568 816 KIAFLLDESNVLESGFLERMNTLLAN--GEIPGLFEGDEYTTLMTQCKEGAQREGLMLDSNEELYKWFTQQ 884 (1614)
Q Consensus 816 ~~v~ll~d~~i~~~~~le~in~lL~~--G~v~~Lf~~eE~~~i~~~~~~~~~~~~~~~~s~~~l~~~f~~r 884 (1614)
.-++++|+.+..+..-.+.+..+|.. +.+.=+|...+...+...++..+..-.....+.+++.++....
T Consensus 119 ~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~I 189 (702)
T PRK14960 119 FKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAI 189 (702)
T ss_pred cEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHH
Confidence 77899999887776554445555544 4445555555555554444433332222223444444444433
No 240
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.52 E-value=0.00028 Score=81.70 Aligned_cols=72 Identities=17% Similarity=0.219 Sum_probs=56.0
Q ss_pred hccCCccEEEeecCCCChHHHHHHHHHHcCCeEEEEEecCCCC--hhcHHHHHHHHHHHhc----cCCCcEEEEEcCCc
Q psy568 753 FRQPQGHLLLIGVSGAGKTTLSRFVAFMNGLSVFQIRAHNKYT--GADFDEDLRTVLRRSG----CKNEKIAFLLDESN 825 (1614)
Q Consensus 753 l~~p~gh~LLvG~~GsGKtsl~rlaA~~~~~~~~~i~~~~~~~--~~df~~~lk~~l~~ag----~~~~~~v~ll~d~~ 825 (1614)
++-|.| ++|.||+|||||.+++++|..+|.+++.+....-++ ..|=-.-++.+++.|. .+++|+++++||-+
T Consensus 145 ik~Plg-llL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEID 222 (413)
T PLN00020 145 IKVPLI-LGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLD 222 (413)
T ss_pred CCCCeE-EEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhh
Confidence 467888 999999999999999999999999999987543322 1222355788888775 46799999998743
No 241
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.51 E-value=0.00069 Score=80.88 Aligned_cols=162 Identities=17% Similarity=0.139 Sum_probs=94.9
Q ss_pred cceeeeCcchhhHHHHHHHHHhc----CCCEEEecCCCCchHHHHHHHHhcCC--CCceEEEEcccCCCHHHHHhH-hhc
Q psy568 393 SDVVVPTLDTVRHESLLYTWLAE----HKPLVLCGPPGSGKTMTLLSALRALP--DMEVVSLNFSSATTPELLLKT-FDH 465 (1614)
Q Consensus 393 ~~~~vpT~~t~r~~~ll~~~l~~----~~~vLL~Gp~GtGKT~lv~~~~~~l~--~~~~~~i~~s~~t~~~~l~~~-~~~ 465 (1614)
.+.||+++...........+... ..|++|+||+|+|||.|++.+..... +.....+..++..-...+... .+.
T Consensus 86 FdnFv~g~~N~~A~aa~~~va~~~g~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~ 165 (408)
T COG0593 86 FDNFVVGPSNRLAYAAAKAVAENPGGAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDN 165 (408)
T ss_pred hhheeeCCchHHHHHHHHHHHhccCCcCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhh
Confidence 35688888776666665555553 58999999999999999988776542 222233333322211111111 111
Q ss_pred ccceeecCCccccccccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCC
Q psy568 466 YCEYRKTPNGVILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTD 545 (1614)
Q Consensus 466 ~~~~~~~~~g~~~~p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~ 545 (1614)
.++.-+ . .| . --+++|||+..-..+..--.....++..+.+.|+ ++|.|+..+.
T Consensus 166 ~~~~Fk---~-~y-~-----~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~k---------------qIvltsdr~P- 219 (408)
T COG0593 166 EMEKFK---E-KY-S-----LDLLLIDDIQFLAGKERTQEEFFHTFNALLENGK---------------QIVLTSDRPP- 219 (408)
T ss_pred hHHHHH---H-hh-c-----cCeeeechHhHhcCChhHHHHHHHHHHHHHhcCC---------------EEEEEcCCCc-
Confidence 111111 1 11 1 1256679999754442112234556666665543 3455554333
Q ss_pred CCCCCCccccccccc---EEEecCCChhHHHHHHHHHH
Q psy568 546 PGRKPLSHRFLRHVP---VIYVDYPGETSLKQIYGTFS 580 (1614)
Q Consensus 546 ~g~~~l~~r~~r~f~---~i~i~~p~~~~l~~I~~~~~ 580 (1614)
..-..+.+||.+||. ++.+.+|+.+....|.....
T Consensus 220 ~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka 257 (408)
T COG0593 220 KELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKA 257 (408)
T ss_pred hhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHH
Confidence 244557789999887 78999999999999977633
No 242
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=97.51 E-value=0.00074 Score=87.81 Aligned_cols=141 Identities=21% Similarity=0.251 Sum_probs=85.1
Q ss_pred HHHHHhccC-CccEEEeecCCCChHHHHHHHHHHcCCeEEEEEecCCCChhcHHHHHHHHHHHhccCCCcEEEEEcCCcc
Q psy568 748 RIDRIFRQP-QGHLLLIGVSGAGKTTLSRFVAFMNGLSVFQIRAHNKYTGADFDEDLRTVLRRSGCKNEKIAFLLDESNV 826 (1614)
Q Consensus 748 ri~Ril~~p-~gh~LLvG~~GsGKtsl~rlaA~~~~~~~~~i~~~~~~~~~df~~~lk~~l~~ag~~~~~~v~ll~d~~i 826 (1614)
.+.+++... .+|++|.||+|+|||++++.+|...+..+..++... .+..+.++.+..+.......+++.++++||-+-
T Consensus 42 ~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~-~~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~ 120 (725)
T PRK13341 42 LLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVL-AGVKDLRAEVDRAKERLERHGKRTILFIDEVHR 120 (725)
T ss_pred HHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhh-hhhHHHHHHHHHHHHHhhhcCCceEEEEeChhh
Confidence 344444433 358999999999999999999999888877765431 233444443333322222234567788887532
Q ss_pred cccchHHHHHHhhccCCCCCCCChhhHHHHHHHhHHHHHHcCCCCCCHHHHHHHHHHHHhhcceEEEEECCCChhhHHHh
Q psy568 827 LESGFLERMNTLLANGEIPGLFEGDEYTTLMTQCKEGAQREGLMLDSNEELYKWFTQQVMKNLHVVFTMNPSSEGLKDRA 906 (1614)
Q Consensus 827 ~~~~~le~in~lL~~G~v~~Lf~~eE~~~i~~~~~~~~~~~~~~~~s~~~l~~~f~~rv~~nlhivl~~sp~~~~~r~~~ 906 (1614)
. +.+..+.+.. .-++-+++++.....+.+ .
T Consensus 121 L---------------------n~~qQdaLL~--------------------------~lE~g~IiLI~aTTenp~---~ 150 (725)
T PRK13341 121 F---------------------NKAQQDALLP--------------------------WVENGTITLIGATTENPY---F 150 (725)
T ss_pred C---------------------CHHHHHHHHH--------------------------HhcCceEEEEEecCCChH---h
Confidence 1 1111111111 111234555443222211 1
Q ss_pred hhCccccccceecccCCCcHHHHHHHHHHhhcc
Q psy568 907 ATSPALFNRCVLNWFGDWSDTALYQVAKEFTSK 939 (1614)
Q Consensus 907 ~~~PaL~~~~~i~wf~~W~~eaL~~va~~~l~~ 939 (1614)
...|+|.++|.+.-|.+.+.+.+..+..+++.+
T Consensus 151 ~l~~aL~SR~~v~~l~pLs~edi~~IL~~~l~~ 183 (725)
T PRK13341 151 EVNKALVSRSRLFRLKSLSDEDLHQLLKRALQD 183 (725)
T ss_pred hhhhHhhccccceecCCCCHHHHHHHHHHHHHH
Confidence 245889999999999999999999999988864
No 243
>PRK04195 replication factor C large subunit; Provisional
Probab=97.48 E-value=0.00044 Score=87.31 Aligned_cols=95 Identities=23% Similarity=0.319 Sum_probs=61.2
Q ss_pred CCccEEEeecCCCChHHHHHHHHHHcCCeEEEEEecCCCChhcHHHHHHHHHHHhccCC-CcEEEEEcCCccccc----c
Q psy568 756 PQGHLLLIGVSGAGKTTLSRFVAFMNGLSVFQIRAHNKYTGADFDEDLRTVLRRSGCKN-EKIAFLLDESNVLES----G 830 (1614)
Q Consensus 756 p~gh~LLvG~~GsGKtsl~rlaA~~~~~~~~~i~~~~~~~~~df~~~lk~~l~~ag~~~-~~~v~ll~d~~i~~~----~ 830 (1614)
|..++||.||+|+|||++++.+|.-.|+++.+++.+...+...+..-+..........+ .+.++++||.+.... .
T Consensus 38 ~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d~~ 117 (482)
T PRK04195 38 PKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRTADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNEDRG 117 (482)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccccHHHHHHHHHHhhccCcccCCCCeEEEEecCcccccccchh
Confidence 45679999999999999999999999999999887643332222222222222212232 567888888765433 4
Q ss_pred hHHHHHHhhccCCCCCCCCh
Q psy568 831 FLERMNTLLANGEIPGLFEG 850 (1614)
Q Consensus 831 ~le~in~lL~~G~v~~Lf~~ 850 (1614)
..+.+..++..+..|-++..
T Consensus 118 ~~~aL~~~l~~~~~~iIli~ 137 (482)
T PRK04195 118 GARAILELIKKAKQPIILTA 137 (482)
T ss_pred HHHHHHHHHHcCCCCEEEec
Confidence 45666666666655555543
No 244
>KOG1969|consensus
Probab=97.47 E-value=0.00028 Score=86.68 Aligned_cols=82 Identities=26% Similarity=0.398 Sum_probs=67.9
Q ss_pred cEEEeecCCCChHHHHHHHHHHcCCeEEEEEecCCCChhcHHHHHHHHHHHhcc---CCCcEEEEEcCCcccccchHHHH
Q psy568 759 HLLLIGVSGAGKTTLSRFVAFMNGLSVFQIRAHNKYTGADFDEDLRTVLRRSGC---KNEKIAFLLDESNVLESGFLERM 835 (1614)
Q Consensus 759 h~LLvG~~GsGKtsl~rlaA~~~~~~~~~i~~~~~~~~~df~~~lk~~l~~ag~---~~~~~v~ll~d~~i~~~~~le~i 835 (1614)
-+||.||+|-|||||++.+|.-+||.+.+|+.+..-+...+++-+-.++....+ +.+|+|+++|+-+=....+++-|
T Consensus 328 ilLL~GppGlGKTTLAHViAkqaGYsVvEINASDeRt~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~~~~Vdvi 407 (877)
T KOG1969|consen 328 ILLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDERTAPMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAPRAAVDVI 407 (877)
T ss_pred eEEeecCCCCChhHHHHHHHHhcCceEEEecccccccHHHHHHHHHHHHhhccccccCCCcceEEEecccCCcHHHHHHH
Confidence 478999999999999999999999999999999998888898888887776544 47999999998655555566666
Q ss_pred HHhhc
Q psy568 836 NTLLA 840 (1614)
Q Consensus 836 n~lL~ 840 (1614)
-+++.
T Consensus 408 lslv~ 412 (877)
T KOG1969|consen 408 LSLVK 412 (877)
T ss_pred HHHHH
Confidence 66553
No 245
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=97.47 E-value=0.00095 Score=79.42 Aligned_cols=89 Identities=15% Similarity=0.109 Sum_probs=54.9
Q ss_pred ceEEEEeccCCCCCcccc------CcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCCCccccccc
Q psy568 485 KWLVLFCDEINLPDMDKY------ATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLRH 558 (1614)
Q Consensus 485 k~~vlfiDdin~p~~d~~------g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r~ 558 (1614)
...|+|||||+....... +...|..-|..+++...+.. + ...+.-.++.|||+..-.. .....|=|.|.-|
T Consensus 247 ~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~-k-~~~v~T~~ILFI~~GAF~~-~kp~DlIPEl~GR 323 (441)
T TIGR00390 247 QSGIIFIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNT-K-YGMVKTDHILFIAAGAFQL-AKPSDLIPELQGR 323 (441)
T ss_pred cCCEEEEEchhhhcccCCCCCCCCCccchhccccccccCceeee-c-ceeEECCceeEEecCCcCC-CChhhccHHHhCc
Confidence 457999999996443210 11223334445666433322 1 1234446788998776432 1233577888888
Q ss_pred cc-EEEecCCChhHHHHHH
Q psy568 559 VP-VIYVDYPGETSLKQIY 576 (1614)
Q Consensus 559 f~-~i~i~~p~~~~l~~I~ 576 (1614)
|. ++.+..++.+++.+|+
T Consensus 324 ~Pi~v~L~~L~~edL~rIL 342 (441)
T TIGR00390 324 FPIRVELQALTTDDFERIL 342 (441)
T ss_pred cceEEECCCCCHHHHHHHh
Confidence 88 5688999999999996
No 246
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.45 E-value=0.00091 Score=78.05 Aligned_cols=143 Identities=17% Similarity=0.249 Sum_probs=80.7
Q ss_pred CCccEEEeecCCCChHHHHHHHHHHcC-------CeEEEEEecCC---C-ChhcHHHHHHHHHHHhccCCCcEEEEEcCC
Q psy568 756 PQGHLLLIGVSGAGKTTLSRFVAFMNG-------LSVFQIRAHNK---Y-TGADFDEDLRTVLRRSGCKNEKIAFLLDES 824 (1614)
Q Consensus 756 p~gh~LLvG~~GsGKtsl~rlaA~~~~-------~~~~~i~~~~~---~-~~~df~~~lk~~l~~ag~~~~~~v~ll~d~ 824 (1614)
|+.|++|.|++|||||++++..|..+. .+++.++.... | +-+ ...++.++.++ .+.++++||-
T Consensus 57 ~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~~~~~g~~--~~~~~~~~~~a----~~gvL~iDEi 130 (284)
T TIGR02880 57 PTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLVGQYIGHT--APKTKEILKRA----MGGVLFIDEA 130 (284)
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHhHhhcccc--hHHHHHHHHHc----cCcEEEEech
Confidence 566899999999999999988776542 24666653211 1 101 12234455554 2246777764
Q ss_pred cccccchHHHHHHhhccCCCCCCCChhhHHHHHHHhHHHHHHcCCCCCCHHHHHHHHHHHHhhcceEEEEECCCChhhHH
Q psy568 825 NVLESGFLERMNTLLANGEIPGLFEGDEYTTLMTQCKEGAQREGLMLDSNEELYKWFTQQVMKNLHVVFTMNPSSEGLKD 904 (1614)
Q Consensus 825 ~i~~~~~le~in~lL~~G~v~~Lf~~eE~~~i~~~~~~~~~~~~~~~~s~~~l~~~f~~rv~~nlhivl~~sp~~~~~r~ 904 (1614)
.. +...+. ..=++.+-.+.++..+ +.-+.++.|+++-++. ....
T Consensus 131 ~~-----------L~~~~~-~~~~~~~~~~~Ll~~l----------------------e~~~~~~~vI~a~~~~--~~~~ 174 (284)
T TIGR02880 131 YY-----------LYRPDN-ERDYGQEAIEILLQVM----------------------ENQRDDLVVILAGYKD--RMDS 174 (284)
T ss_pred hh-----------hccCCC-ccchHHHHHHHHHHHH----------------------hcCCCCEEEEEeCCcH--HHHH
Confidence 22 111110 0011111112222111 1112466666655443 2333
Q ss_pred HhhhCccccccce-ecccCCCcHHHHHHHHHHhhccc
Q psy568 905 RAATSPALFNRCV-LNWFGDWSDTALYQVAKEFTSKI 940 (1614)
Q Consensus 905 ~~~~~PaL~~~~~-i~wf~~W~~eaL~~va~~~l~~~ 940 (1614)
..+..|+|.+++. ...|++.+.+.+..+..+++.+.
T Consensus 175 ~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~ 211 (284)
T TIGR02880 175 FFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQ 211 (284)
T ss_pred HHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHh
Confidence 4456899999985 57899999999999999998864
No 247
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=97.44 E-value=0.00073 Score=84.20 Aligned_cols=125 Identities=26% Similarity=0.349 Sum_probs=74.4
Q ss_pred ccEEEeecCCCChHHHHHHHHHHcCC----------------------------eEEEEEecCCCChhcHHHHHHHHHHH
Q psy568 758 GHLLLIGVSGAGKTTLSRFVAFMNGL----------------------------SVFQIRAHNKYTGADFDEDLRTVLRR 809 (1614)
Q Consensus 758 gh~LLvG~~GsGKtsl~rlaA~~~~~----------------------------~~~~i~~~~~~~~~df~~~lk~~l~~ 809 (1614)
+++||.||+|+||||++|.+|...++ ++++++.....+.. +++.++..
T Consensus 44 ~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~h~Dv~eidaas~~~vd----~Ir~iie~ 119 (507)
T PRK06645 44 GGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHNHPDIIEIDAASKTSVD----DIRRIIES 119 (507)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCCCCcEEEeeccCCCCHH----HHHHHHHH
Confidence 46999999999999999999987654 23344333333443 44444443
Q ss_pred h---ccCCCcEEEEEcCCcccccchHHHHHHhhcc--CCCCCCCChhhHHHHHHHhHHHHHHcCCCCCCHHHHHHHHHHH
Q psy568 810 S---GCKNEKIAFLLDESNVLESGFLERMNTLLAN--GEIPGLFEGDEYTTLMTQCKEGAQREGLMLDSNEELYKWFTQQ 884 (1614)
Q Consensus 810 a---g~~~~~~v~ll~d~~i~~~~~le~in~lL~~--G~v~~Lf~~eE~~~i~~~~~~~~~~~~~~~~s~~~l~~~f~~r 884 (1614)
+ ...++.-++++|+.+.....-.+.+-..|.. +.+-=+|...+.+.+...++..+..-.....+.+++.+++..+
T Consensus 120 a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i 199 (507)
T PRK06645 120 AEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYI 199 (507)
T ss_pred HHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHH
Confidence 3 3456677888998766555333333333332 2222256667777776665554433333334666777777666
Q ss_pred Hh
Q psy568 885 VM 886 (1614)
Q Consensus 885 v~ 886 (1614)
++
T Consensus 200 ~~ 201 (507)
T PRK06645 200 TK 201 (507)
T ss_pred HH
Confidence 65
No 248
>PRK08181 transposase; Validated
Probab=97.44 E-value=0.00035 Score=80.06 Aligned_cols=95 Identities=21% Similarity=0.278 Sum_probs=51.9
Q ss_pred HHHHHHhcCCCEEEecCCCCchHHHHHHHHhcC--CCCceEEEEcccCCCHHHHHhHhhcccceeecCCccccccccCCc
Q psy568 408 LLYTWLAEHKPLVLCGPPGSGKTMTLLSALRAL--PDMEVVSLNFSSATTPELLLKTFDHYCEYRKTPNGVILSPIQLGK 485 (1614)
Q Consensus 408 ll~~~l~~~~~vLL~Gp~GtGKT~lv~~~~~~l--~~~~~~~i~~s~~t~~~~l~~~~~~~~~~~~~~~g~~~~p~~~gk 485 (1614)
....++..+.+++|+||||||||.++..+.... .+..++.++. .++...+........ ........ .+
T Consensus 98 ~~~~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~------~~L~~~l~~a~~~~~--~~~~l~~l--~~ 167 (269)
T PRK08181 98 AGDSWLAKGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRT------TDLVQKLQVARRELQ--LESAIAKL--DK 167 (269)
T ss_pred HHHHHHhcCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeH------HHHHHHHHHHHhCCc--HHHHHHHH--hc
Confidence 344467789999999999999999998887643 2445554433 334443321110000 00011111 12
Q ss_pred eEEEEeccCCCCCccccCcccHHHHHH
Q psy568 486 WLVLFCDEINLPDMDKYATQRVISFLR 512 (1614)
Q Consensus 486 ~~vlfiDdin~p~~d~~g~q~~lelLr 512 (1614)
.-+++|||+.....+.++....++++.
T Consensus 168 ~dLLIIDDlg~~~~~~~~~~~Lf~lin 194 (269)
T PRK08181 168 FDLLILDDLAYVTKDQAETSVLFELIS 194 (269)
T ss_pred CCEEEEeccccccCCHHHHHHHHHHHH
Confidence 246677999886555433333444443
No 249
>KOG1514|consensus
Probab=97.44 E-value=0.0033 Score=77.64 Aligned_cols=208 Identities=16% Similarity=0.241 Sum_probs=114.6
Q ss_pred HHHHHHHhc---CCCEEEecCCCCchHHHHHHHHhcC---------CCCceEEEEcccCCCHHHHHhHhhcccceee--c
Q psy568 407 SLLYTWLAE---HKPLVLCGPPGSGKTMTLLSALRAL---------PDMEVVSLNFSSATTPELLLKTFDHYCEYRK--T 472 (1614)
Q Consensus 407 ~ll~~~l~~---~~~vLL~Gp~GtGKT~lv~~~~~~l---------~~~~~~~i~~s~~t~~~~l~~~~~~~~~~~~--~ 472 (1614)
.++...+.. |.-+.+.|-||||||.+|..++..+ +...++.+|.-..+.+..+-..|-..+...+ +
T Consensus 410 ~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~ 489 (767)
T KOG1514|consen 410 DFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTW 489 (767)
T ss_pred HHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccH
Confidence 344444543 4568899999999999999888744 3456778887777777665444422111100 0
Q ss_pred C------CccccccccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEee--cCeEEEEeecCCC
Q psy568 473 P------NGVILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSL--ERIQCVGACNPPT 544 (1614)
Q Consensus 473 ~------~g~~~~p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~--~~~~~iaa~n~~~ 544 (1614)
. .-.+..|....+.+|+.|||++..-. ..|.+ |--+.+ |... ..+.+||-.|.-
T Consensus 490 ~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvt---r~QdV---lYn~fd-----------Wpt~~~sKLvvi~IaNTm- 551 (767)
T KOG1514|consen 490 DAALEALNFRFTVPKPKRSTTVVLIDELDILVT---RSQDV---LYNIFD-----------WPTLKNSKLVVIAIANTM- 551 (767)
T ss_pred HHHHHHHHHhhccCCCCCCCEEEEeccHHHHhc---ccHHH---HHHHhc-----------CCcCCCCceEEEEecccc-
Confidence 0 01122333345678999999986211 12333 222222 2222 245666655542
Q ss_pred CCCCCCCccccc-----c--cccEEEecCCChhHHHHHHHHHHHhhhhcchhhhhhHHHHHHH-------HHHHHHHH--
Q psy568 545 DPGRKPLSHRFL-----R--HVPVIYVDYPGETSLKQIYGTFSRAMLRLIPPLRGYADALTNA-------MVELYLAS-- 608 (1614)
Q Consensus 545 ~~g~~~l~~r~~-----r--~f~~i~i~~p~~~~l~~I~~~~~~~~~~~~~~~~~~~~~l~~~-------~~~~~~~~-- 608 (1614)
.||.|++ + .|+.+.+.+.+.++|+.|...-+.+...|.+....++..=|.+ ..++-...
T Consensus 552 -----dlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~RA~E 626 (767)
T KOG1514|consen 552 -----DLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRRAAE 626 (767)
T ss_pred -----cCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 2444433 2 5778899999999999999988877755544333222111111 11111111
Q ss_pred -H-hhcCC-CCCCccccChhhHHHHhhhhhcc
Q psy568 609 -Q-EKFTQ-DMQPHYVYSPREMTRWVRGICEA 637 (1614)
Q Consensus 609 -~-~~~~~-~~~~hY~F~lRdl~~v~~~i~~~ 637 (1614)
+ ..+.. ..-.-|...++++...+++++..
T Consensus 627 ia~~~~~~~k~~~~q~v~~~~v~~Ai~em~~~ 658 (767)
T KOG1514|consen 627 IAEERNVKGKLAVSQLVGILHVMEAINEMLAS 658 (767)
T ss_pred HhhhhcccccccccceeehHHHHHHHHHHhhh
Confidence 1 11110 01113667888988888887753
No 250
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.41 E-value=0.0012 Score=82.54 Aligned_cols=124 Identities=16% Similarity=0.201 Sum_probs=83.6
Q ss_pred ccE-EEeecCCCChHHHHHHHHHHcCC-----------------------------eEEEEEecCCCChhcHHHHHHHHH
Q psy568 758 GHL-LLIGVSGAGKTTLSRFVAFMNGL-----------------------------SVFQIRAHNKYTGADFDEDLRTVL 807 (1614)
Q Consensus 758 gh~-LLvG~~GsGKtsl~rlaA~~~~~-----------------------------~~~~i~~~~~~~~~df~~~lk~~l 807 (1614)
.|+ ||.|+.|+||||+++.+|...++ ++++++..++.++.+.++-+..+.
T Consensus 38 pHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~hpDviEIdAas~~gVDdIReLie~~~ 117 (700)
T PRK12323 38 HHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAV 117 (700)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCCCCcceEecccccCCHHHHHHHHHHHH
Confidence 455 89999999999999999987665 445555544555555555443333
Q ss_pred HHhccCCCcEEEEEcCCcccccchHHHHHHhhcc-----CCCCCCCChhhHHHHHHHhHHHHHHcCCCCCCHHHHHHHHH
Q psy568 808 RRSGCKNEKIAFLLDESNVLESGFLERMNTLLAN-----GEIPGLFEGDEYTTLMTQCKEGAQREGLMLDSNEELYKWFT 882 (1614)
Q Consensus 808 ~~ag~~~~~~v~ll~d~~i~~~~~le~in~lL~~-----G~v~~Lf~~eE~~~i~~~~~~~~~~~~~~~~s~~~l~~~f~ 882 (1614)
.. ...++.-|++||+-+..+.. ..|.||.+ +.+.=+|...+...|...++..++...+...+.+++.+++.
T Consensus 118 ~~-P~~gr~KViIIDEah~Ls~~---AaNALLKTLEEPP~~v~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~ 193 (700)
T PRK12323 118 YA-PTAGRFKVYMIDEVHMLTNH---AFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLD 193 (700)
T ss_pred hc-hhcCCceEEEEEChHhcCHH---HHHHHHHhhccCCCCceEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHH
Confidence 22 24566678888987766553 45667654 55556777788888888888777776655556666666665
Q ss_pred HHH
Q psy568 883 QQV 885 (1614)
Q Consensus 883 ~rv 885 (1614)
+.+
T Consensus 194 ~Il 196 (700)
T PRK12323 194 AIL 196 (700)
T ss_pred HHH
Confidence 444
No 251
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=97.40 E-value=0.63 Score=65.68 Aligned_cols=63 Identities=22% Similarity=0.414 Sum_probs=34.9
Q ss_pred HHHHhhhhhHHHHHHHHHHHHhhhhhHHHhhcCCCCcHHHHHHHHHHHHhcCCCCCCHHHHHHHhchhhh
Q psy568 1106 VMEDLAQVEPAVMDAQQAVKEIKKQQLVELRSMANPPSVVKLALESICLLLGENATDWKAIRAVVMRENF 1175 (1614)
Q Consensus 1106 ~~~~l~~a~p~l~~A~~al~~l~~~dl~Eirs~~~PP~~V~~v~eavc~Llg~~~~~W~~~k~~l~~~~F 1175 (1614)
++.+-..+.-.+..++..+..+ ...+.+|...-.|.++ -++-.|..+.+.|..--.-+-+|..
T Consensus 502 ~~~~~~~a~~~l~~~~~~~~~~-~~~~~~l~~~L~p~~g------SL~~fL~~~~p~We~tIGKVid~eL 564 (1201)
T PF12128_consen 502 LRKERDQAEEELRQARRELEEL-RAQIAELQRQLDPQKG------SLLEFLRKNKPGWEQTIGKVIDEEL 564 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhCCCCC------cHHHHHHhCCCcHHHHhHhhCCHHH
Confidence 3333444444555555555554 4567777777766654 2334455556789877544455554
No 252
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.39 E-value=0.02 Score=71.91 Aligned_cols=131 Identities=18% Similarity=0.355 Sum_probs=78.7
Q ss_pred ccE-EEeecCCCChHHHHHHHHHHcCC-----------------------eEEEEEecCCCChhcHHHHHHHHHHHhccC
Q psy568 758 GHL-LLIGVSGAGKTTLSRFVAFMNGL-----------------------SVFQIRAHNKYTGADFDEDLRTVLRRSGCK 813 (1614)
Q Consensus 758 gh~-LLvG~~GsGKtsl~rlaA~~~~~-----------------------~~~~i~~~~~~~~~df~~~lk~~l~~ag~~ 813 (1614)
+|+ ||.||+|+||||+++.+|....+ .+.+++.....+..+.++ ++..+......
T Consensus 36 ~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~el~~~~~~~vd~iR~-l~~~~~~~p~~ 114 (504)
T PRK14963 36 GHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVLEIDAASNNSVEDVRD-LREKVLLAPLR 114 (504)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceEEecccccCCHHHHHH-HHHHHhhcccc
Confidence 566 99999999999999988876543 255555544444444433 33333333345
Q ss_pred CCcEEEEEcCCcccccchHHHHHHhhccCCCCCCCChhhHHHHHHHhHHHHHHcCCCCCCHHHHHHHHHHHHhhcceEEE
Q psy568 814 NEKIAFLLDESNVLESGFLERMNTLLANGEIPGLFEGDEYTTLMTQCKEGAQREGLMLDSNEELYKWFTQQVMKNLHVVF 893 (1614)
Q Consensus 814 ~~~~v~ll~d~~i~~~~~le~in~lL~~G~v~~Lf~~eE~~~i~~~~~~~~~~~~~~~~s~~~l~~~f~~rv~~nlhivl 893 (1614)
+++-++++|+.+... .+..+.++..+ +.-..+..+|+
T Consensus 115 ~~~kVVIIDEad~ls---------------------~~a~naLLk~L----------------------Eep~~~t~~Il 151 (504)
T PRK14963 115 GGRKVYILDEAHMMS---------------------KSAFNALLKTL----------------------EEPPEHVIFIL 151 (504)
T ss_pred CCCeEEEEECccccC---------------------HHHHHHHHHHH----------------------HhCCCCEEEEE
Confidence 566778888753211 11222221111 11122555666
Q ss_pred EECCCChhhHHHhhhCccccccceecccCCCcHHHHHHHHHHhhcc
Q psy568 894 TMNPSSEGLKDRAATSPALFNRCVLNWFGDWSDTALYQVAKEFTSK 939 (1614)
Q Consensus 894 ~~sp~~~~~r~~~~~~PaL~~~~~i~wf~~W~~eaL~~va~~~l~~ 939 (1614)
+.+.. -...|.+.++|.+.-|.+.+.+.+.....+.+..
T Consensus 152 ~t~~~-------~kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~ 190 (504)
T PRK14963 152 ATTEP-------EKMPPTILSRTQHFRFRRLTEEEIAGKLRRLLEA 190 (504)
T ss_pred EcCCh-------hhCChHHhcceEEEEecCCCHHHHHHHHHHHHHH
Confidence 54321 1346788899999999999999988877766653
No 253
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.38 E-value=0.0012 Score=81.74 Aligned_cols=102 Identities=22% Similarity=0.286 Sum_probs=63.7
Q ss_pred cEEEeecCCCChHHHHHHHHHHcC------------------------CeEEEEEecCCCChhcHHHHHHHHHHHhccCC
Q psy568 759 HLLLIGVSGAGKTTLSRFVAFMNG------------------------LSVFQIRAHNKYTGADFDEDLRTVLRRSGCKN 814 (1614)
Q Consensus 759 h~LLvG~~GsGKtsl~rlaA~~~~------------------------~~~~~i~~~~~~~~~df~~~lk~~l~~ag~~~ 814 (1614)
++||.||+|+||||+++++|...+ .++++++.....+..+.++-+.. .......+
T Consensus 37 a~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eidaas~~~vddIR~Iie~-~~~~P~~~ 115 (491)
T PRK14964 37 SILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEIDAASNTSVDDIKVILEN-SCYLPISS 115 (491)
T ss_pred eEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEecccCCCHHHHHHHHHH-HHhccccC
Confidence 599999999999999999997432 35677776666666665543322 23334556
Q ss_pred CcEEEEEcCCcccccchHHHHHHhhccC-----CCCCCCChhhHHHHHHHhHHHH
Q psy568 815 EKIAFLLDESNVLESGFLERMNTLLANG-----EIPGLFEGDEYTTLMTQCKEGA 864 (1614)
Q Consensus 815 ~~~v~ll~d~~i~~~~~le~in~lL~~G-----~v~~Lf~~eE~~~i~~~~~~~~ 864 (1614)
+.-++++|+.+..... ..|.||.+- .+.-+|...|.+.+...++..+
T Consensus 116 ~~KVvIIDEah~Ls~~---A~NaLLK~LEePp~~v~fIlatte~~Kl~~tI~SRc 167 (491)
T PRK14964 116 KFKVYIIDEVHMLSNS---AFNALLKTLEEPAPHVKFILATTEVKKIPVTIISRC 167 (491)
T ss_pred CceEEEEeChHhCCHH---HHHHHHHHHhCCCCCeEEEEEeCChHHHHHHHHHhh
Confidence 7778999987655543 345555442 2334455556655555444443
No 254
>PRK02224 chromosome segregation protein; Provisional
Probab=97.38 E-value=0.56 Score=64.64 Aligned_cols=23 Identities=39% Similarity=0.452 Sum_probs=19.0
Q ss_pred CEEEecCCCCchHHHHHHHHhcC
Q psy568 418 PLVLCGPPGSGKTMTLLSALRAL 440 (1614)
Q Consensus 418 ~vLL~Gp~GtGKT~lv~~~~~~l 440 (1614)
-.+|+||.|+|||+++..+.-.+
T Consensus 25 ~~~i~G~Ng~GKStil~ai~~~l 47 (880)
T PRK02224 25 VTVIHGVNGSGKSSLLEACFFAL 47 (880)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999998876555
No 255
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=97.38 E-value=0.00082 Score=85.03 Aligned_cols=153 Identities=22% Similarity=0.247 Sum_probs=95.0
Q ss_pred CCCEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCC--CHHHHHhHhhcccceeecCCccccccccCCceEEEEecc
Q psy568 416 HKPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSAT--TPELLLKTFDHYCEYRKTPNGVILSPIQLGKWLVLFCDE 493 (1614)
Q Consensus 416 ~~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t--~~~~l~~~~~~~~~~~~~~~g~~~~p~~~gk~~vlfiDd 493 (1614)
..||||+|.||+|||.+++.+.+..+...+..-..|+.. |+.-......+ +|.- ..|.++-+- ..|+.|||
T Consensus 319 DInILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss~~GLTAav~rd~~tg--e~~L-eaGALVlAD----~Gv~cIDE 391 (682)
T COG1241 319 DIHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSSAAGLTAAVVRDKVTG--EWVL-EAGALVLAD----GGVCCIDE 391 (682)
T ss_pred ceeEEEcCCCchhHHHHHHHHHhhCCceEEEccccccccCceeEEEEccCCC--eEEE-eCCEEEEec----CCEEEEEe
Confidence 369999999999999999888877654333333232221 11111111101 2221 135554442 25666799
Q ss_pred CC-CCCccccCcccHHHHHHHHHHcCceeeCCCCceEee-cCeEEEEeecCCCCCCC----------CCCcccccccccE
Q psy568 494 IN-LPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSL-ERIQCVGACNPPTDPGR----------KPLSHRFLRHVPV 561 (1614)
Q Consensus 494 in-~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~-~~~~~iaa~n~~~~~g~----------~~l~~r~~r~f~~ 561 (1614)
++ |+..|. ..|-..|+.+.+-..+.+-...+ ....++||+||.. || -.+|+.|++||-+
T Consensus 392 fdKm~~~dr-------~aihEaMEQQtIsIaKAGI~atLnARcsvLAAaNP~~--Gryd~~~~~~enI~l~~~lLSRFDL 462 (682)
T COG1241 392 FDKMNEEDR-------VAIHEAMEQQTISIAKAGITATLNARCSVLAAANPKF--GRYDPKKTVAENINLPAPLLSRFDL 462 (682)
T ss_pred ccCCChHHH-------HHHHHHHHhcEeeecccceeeecchhhhhhhhhCCCC--CcCCCCCCHHHhcCCChhHHhhCCe
Confidence 99 555543 34556667776666555533333 4688999999986 32 3568889999996
Q ss_pred EE--ecCCChhHHHHHHHHHHHhhh
Q psy568 562 IY--VDYPGETSLKQIYGTFSRAML 584 (1614)
Q Consensus 562 i~--i~~p~~~~l~~I~~~~~~~~~ 584 (1614)
|. .+.|+.+.-..|...++..+.
T Consensus 463 ifvl~D~~d~~~D~~ia~hil~~h~ 487 (682)
T COG1241 463 IFVLKDDPDEEKDEEIAEHILDKHR 487 (682)
T ss_pred eEEecCCCCccchHHHHHHHHHHHh
Confidence 54 478888877888887777764
No 256
>CHL00181 cbbX CbbX; Provisional
Probab=97.37 E-value=0.00078 Score=78.52 Aligned_cols=143 Identities=20% Similarity=0.277 Sum_probs=81.1
Q ss_pred CCccEEEeecCCCChHHHHHHHHHHc---C----CeEEEEEecCCCChhcHH----HHHHHHHHHhccCCCcEEEEEcCC
Q psy568 756 PQGHLLLIGVSGAGKTTLSRFVAFMN---G----LSVFQIRAHNKYTGADFD----EDLRTVLRRSGCKNEKIAFLLDES 824 (1614)
Q Consensus 756 p~gh~LLvG~~GsGKtsl~rlaA~~~---~----~~~~~i~~~~~~~~~df~----~~lk~~l~~ag~~~~~~v~ll~d~ 824 (1614)
++-|++|.|+||+|||++++.+|..+ | .+++.++...- ...+. ...+.++.++. +.++++||.
T Consensus 58 ~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l--~~~~~g~~~~~~~~~l~~a~----ggVLfIDE~ 131 (287)
T CHL00181 58 PGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDL--VGQYIGHTAPKTKEVLKKAM----GGVLFIDEA 131 (287)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHH--HHHHhccchHHHHHHHHHcc----CCEEEEEcc
Confidence 34479999999999999999998764 2 23555542210 01111 12344555442 247777775
Q ss_pred cccccchHHHHHHhhccCCCCCCCChhhHHHHHHHhHHHHHHcCCCCCCHHHHHHHHHHHHhhcceEEEEECCCChhhHH
Q psy568 825 NVLESGFLERMNTLLANGEIPGLFEGDEYTTLMTQCKEGAQREGLMLDSNEELYKWFTQQVMKNLHVVFTMNPSSEGLKD 904 (1614)
Q Consensus 825 ~i~~~~~le~in~lL~~G~v~~Lf~~eE~~~i~~~~~~~~~~~~~~~~s~~~l~~~f~~rv~~nlhivl~~sp~~~~~r~ 904 (1614)
... ...+. .+=|+.+..+.+...+ +.-+.++.||++-++ +....
T Consensus 132 ~~l-----------~~~~~-~~~~~~e~~~~L~~~m----------------------e~~~~~~~vI~ag~~--~~~~~ 175 (287)
T CHL00181 132 YYL-----------YKPDN-ERDYGSEAIEILLQVM----------------------ENQRDDLVVIFAGYK--DRMDK 175 (287)
T ss_pred chh-----------ccCCC-ccchHHHHHHHHHHHH----------------------hcCCCCEEEEEeCCc--HHHHH
Confidence 321 11110 0112333222222211 111245655555433 23334
Q ss_pred HhhhCccccccce-ecccCCCcHHHHHHHHHHhhccc
Q psy568 905 RAATSPALFNRCV-LNWFGDWSDTALYQVAKEFTSKI 940 (1614)
Q Consensus 905 ~~~~~PaL~~~~~-i~wf~~W~~eaL~~va~~~l~~~ 940 (1614)
.....|+|.++|. +..|.+.+.+.+..++..++++.
T Consensus 176 ~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~ 212 (287)
T CHL00181 176 FYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQ 212 (287)
T ss_pred HHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHh
Confidence 4456799999887 57799999999999999998864
No 257
>PRK08116 hypothetical protein; Validated
Probab=97.36 E-value=0.00016 Score=83.40 Aligned_cols=132 Identities=17% Similarity=0.236 Sum_probs=66.4
Q ss_pred cCCCEEEecCCCCchHHHHHHHHhcCC--CCceEEEEcccCCCHHHHHhHhhcccceeecCCccccccccCCceEEEEec
Q psy568 415 EHKPLVLCGPPGSGKTMTLLSALRALP--DMEVVSLNFSSATTPELLLKTFDHYCEYRKTPNGVILSPIQLGKWLVLFCD 492 (1614)
Q Consensus 415 ~~~~vLL~Gp~GtGKT~lv~~~~~~l~--~~~~~~i~~s~~t~~~~l~~~~~~~~~~~~~~~g~~~~p~~~gk~~vlfiD 492 (1614)
.+.+++|+|++|||||.++..+++.+. +..++.++++... ..+...+....... ...+....... -+|+||
T Consensus 113 ~~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll--~~i~~~~~~~~~~~---~~~~~~~l~~~--dlLviD 185 (268)
T PRK08116 113 ENVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLL--NRIKSTYKSSGKED---ENEIIRSLVNA--DLLILD 185 (268)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHH--HHHHHHHhcccccc---HHHHHHHhcCC--CEEEEe
Confidence 356799999999999999998887652 4556666543211 11222221100000 00111111112 256679
Q ss_pred cCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCCCccccccc----ccEEEecCCC
Q psy568 493 EINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLRH----VPVIYVDYPG 568 (1614)
Q Consensus 493 din~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r~----f~~i~i~~p~ 568 (1614)
|+.......| ..+.|-.+++.+ |.. +..+|.|+|.+...-...++.|+.+| +.+|.++-++
T Consensus 186 Dlg~e~~t~~----~~~~l~~iin~r--~~~---------~~~~IiTsN~~~~eL~~~~~~ri~sRl~e~~~~v~~~g~d 250 (268)
T PRK08116 186 DLGAERDTEW----AREKVYNIIDSR--YRK---------GLPTIVTTNLSLEELKNQYGKRIYDRILEMCTPVENEGKS 250 (268)
T ss_pred cccCCCCCHH----HHHHHHHHHHHH--HHC---------CCCEEEECCCCHHHHHHHHhHHHHHHHHHcCEEEEeeCcC
Confidence 9976433333 344455555543 221 12357777765311111234555555 4456666555
No 258
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=97.35 E-value=0.00022 Score=73.82 Aligned_cols=127 Identities=13% Similarity=0.238 Sum_probs=77.3
Q ss_pred chhhHHHHHHHHHhcCCCEEEecCCCCchHHHHHHHHhcCCC--CceEEEEcccCCCHHHHHhHhhcccceeecCCcccc
Q psy568 401 DTVRHESLLYTWLAEHKPLVLCGPPGSGKTMTLLSALRALPD--MEVVSLNFSSATTPELLLKTFDHYCEYRKTPNGVIL 478 (1614)
Q Consensus 401 ~t~r~~~ll~~~l~~~~~vLL~Gp~GtGKT~lv~~~~~~l~~--~~~~~i~~s~~t~~~~l~~~~~~~~~~~~~~~g~~~ 478 (1614)
.+.+...-+..+...+.||+|+|++||||+.+++.+...... .+++.++|.... . ..++.
T Consensus 6 ~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-~----~~l~~------------- 67 (138)
T PF14532_consen 6 AMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-A----ELLEQ------------- 67 (138)
T ss_dssp HHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC-H----HHHHH-------------
T ss_pred HHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc-H----HHHHH-------------
Confidence 455667778888899999999999999999988766655432 234555555422 1 12211
Q ss_pred ccccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCC--CCCCCccccc
Q psy568 479 SPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDP--GRKPLSHRFL 556 (1614)
Q Consensus 479 ~p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~--g~~~l~~r~~ 556 (1614)
. .| ..+||+|++. -+......|.++++... -.++++|+++..+-.. ....+.++|.
T Consensus 68 --a-~~--gtL~l~~i~~------L~~~~Q~~L~~~l~~~~-----------~~~~RlI~ss~~~l~~l~~~~~~~~~L~ 125 (138)
T PF14532_consen 68 --A-KG--GTLYLKNIDR------LSPEAQRRLLDLLKRQE-----------RSNVRLIASSSQDLEELVEEGRFSPDLY 125 (138)
T ss_dssp --C-TT--SEEEEECGCC------S-HHHHHHHHHHHHHCT-----------TTTSEEEEEECC-CCCHHHHSTHHHHHH
T ss_pred --c-CC--CEEEECChHH------CCHHHHHHHHHHHHhcC-----------CCCeEEEEEeCCCHHHHhhccchhHHHH
Confidence 1 12 3356699998 34445666667776522 1357888888765421 1245778888
Q ss_pred ccccEEEecCC
Q psy568 557 RHVPVIYVDYP 567 (1614)
Q Consensus 557 r~f~~i~i~~p 567 (1614)
.++..+.+.-|
T Consensus 126 ~~l~~~~i~lP 136 (138)
T PF14532_consen 126 YRLSQLEIHLP 136 (138)
T ss_dssp HHCSTCEEEE-
T ss_pred HHhCCCEEeCC
Confidence 88775554444
No 259
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.35 E-value=0.0014 Score=82.41 Aligned_cols=128 Identities=19% Similarity=0.213 Sum_probs=76.9
Q ss_pred cc-EEEeecCCCChHHHHHHHHHHcCCe------------------------EEEEEecCCCChhcHHHHHHHHHHHhcc
Q psy568 758 GH-LLLIGVSGAGKTTLSRFVAFMNGLS------------------------VFQIRAHNKYTGADFDEDLRTVLRRSGC 812 (1614)
Q Consensus 758 gh-~LLvG~~GsGKtsl~rlaA~~~~~~------------------------~~~i~~~~~~~~~df~~~lk~~l~~ag~ 812 (1614)
.| .||.||+|+||||+++.+|...+++ +++++.....+..++++-+..+ ..+..
T Consensus 38 ~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~eidaas~~~v~~iR~l~~~~-~~~p~ 116 (509)
T PRK14958 38 HHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEVDAASRTKVEDTRELLDNI-PYAPT 116 (509)
T ss_pred CeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEEcccccCCHHHHHHHHHHH-hhccc
Confidence 35 5899999999999999999876653 6677666666777776644333 33445
Q ss_pred CCCcEEEEEcCCcccccchHHHHHHhhcc--CCCCCCCChhhHHHHHHHhHHHHHHcCCCCCCHHHHHHHHHHHHh
Q psy568 813 KNEKIAFLLDESNVLESGFLERMNTLLAN--GEIPGLFEGDEYTTLMTQCKEGAQREGLMLDSNEELYKWFTQQVM 886 (1614)
Q Consensus 813 ~~~~~v~ll~d~~i~~~~~le~in~lL~~--G~v~~Lf~~eE~~~i~~~~~~~~~~~~~~~~s~~~l~~~f~~rv~ 886 (1614)
.++.-++++|+.+.....-.+.+-..|.. +.+.=+|...+...+...++..+..-.....+..++.++....++
T Consensus 117 ~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~ 192 (509)
T PRK14958 117 KGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLK 192 (509)
T ss_pred cCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHH
Confidence 66777899999877766443333333332 233344544555555555554444333322345555555444443
No 260
>PLN03025 replication factor C subunit; Provisional
Probab=97.34 E-value=0.0012 Score=78.93 Aligned_cols=82 Identities=21% Similarity=0.282 Sum_probs=50.7
Q ss_pred ccEEEeecCCCChHHHHHHHHHHc-C----CeEEEEEecCCCChhcHHHHHHHHHHHhc-c-CCCcEEEEEcCCcccccc
Q psy568 758 GHLLLIGVSGAGKTTLSRFVAFMN-G----LSVFQIRAHNKYTGADFDEDLRTVLRRSG-C-KNEKIAFLLDESNVLESG 830 (1614)
Q Consensus 758 gh~LLvG~~GsGKtsl~rlaA~~~-~----~~~~~i~~~~~~~~~df~~~lk~~l~~ag-~-~~~~~v~ll~d~~i~~~~ 830 (1614)
.|++|.||+|+|||++++.+|... | ..+.+++.+...+...+++-++..-.... . .+..-++++||.+-....
T Consensus 35 ~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~~~~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~ 114 (319)
T PLN03025 35 PNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSG 114 (319)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccccccHHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCHH
Confidence 479999999999999999988764 2 23555655555555555555544322211 1 244668888887665544
Q ss_pred hHHHHHHhh
Q psy568 831 FLERMNTLL 839 (1614)
Q Consensus 831 ~le~in~lL 839 (1614)
--+.+...+
T Consensus 115 aq~aL~~~l 123 (319)
T PLN03025 115 AQQALRRTM 123 (319)
T ss_pred HHHHHHHHH
Confidence 333344334
No 261
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.34 E-value=0.00062 Score=84.57 Aligned_cols=78 Identities=21% Similarity=0.335 Sum_probs=49.4
Q ss_pred HHHHhccCCc-c-EEEeecCCCChHHHHHHHHHHcCC------------------------eEEEEEecCCCChhcHHHH
Q psy568 749 IDRIFRQPQG-H-LLLIGVSGAGKTTLSRFVAFMNGL------------------------SVFQIRAHNKYTGADFDED 802 (1614)
Q Consensus 749 i~Ril~~p~g-h-~LLvG~~GsGKtsl~rlaA~~~~~------------------------~~~~i~~~~~~~~~df~~~ 802 (1614)
+.+.+..++- | +||.||+|+||||+++++|...++ .+.+++.....+..++++
T Consensus 26 L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~aa~~~gid~iR~- 104 (472)
T PRK14962 26 IINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELDAASNRGIDEIRK- 104 (472)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEEeCcccCCHHHHHH-
Confidence 3344444332 3 799999999999999999987665 456665544455555542
Q ss_pred HHHHHHHhccCCCcEEEEEcCCccc
Q psy568 803 LRTVLRRSGCKNEKIAFLLDESNVL 827 (1614)
Q Consensus 803 lk~~l~~ag~~~~~~v~ll~d~~i~ 827 (1614)
++.........++..++++|+.+..
T Consensus 105 i~~~~~~~p~~~~~kVvIIDE~h~L 129 (472)
T PRK14962 105 IRDAVGYRPMEGKYKVYIIDEVHML 129 (472)
T ss_pred HHHHHhhChhcCCeEEEEEEChHHh
Confidence 3333333334456678888886544
No 262
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=97.32 E-value=0.046 Score=65.68 Aligned_cols=59 Identities=24% Similarity=0.294 Sum_probs=31.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy568 1237 KVEPLRLELKSLEVQASENKAKGEETKDLITQLEKSIASYKDEYAQLIAQATAIKTDLD 1295 (1614)
Q Consensus 1237 ~v~P~~~~l~~~~~~~~~~~~~l~~~~~~l~~~e~~l~~l~~~~~~~~~~~~~l~~~l~ 1295 (1614)
.+.-...++++++.++.+.+.++.++++.+..++.+.+....+...+..+.+..+..|+
T Consensus 222 ~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~ 280 (344)
T PF12777_consen 222 KLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLE 280 (344)
T ss_dssp HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 33334445555555555555555556666666666555555555555555555444443
No 263
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=97.31 E-value=0.0047 Score=74.42 Aligned_cols=74 Identities=12% Similarity=0.151 Sum_probs=49.2
Q ss_pred CCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCCCcccccccccEE
Q psy568 483 LGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLRHVPVI 562 (1614)
Q Consensus 483 ~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r~f~~i 562 (1614)
.|.+-|++|||++.- +......|...++.- . .+..||.+++.++ .+.+.+.+|+..+
T Consensus 139 ~~~~kVviIDead~m------~~~aanaLLK~LEep-----p-------~~~~~IL~t~~~~-----~llpti~SRc~~i 195 (365)
T PRK07471 139 EGGWRVVIVDTADEM------NANAANALLKVLEEP-----P-------ARSLFLLVSHAPA-----RLLPTIRSRCRKL 195 (365)
T ss_pred cCCCEEEEEechHhc------CHHHHHHHHHHHhcC-----C-------CCeEEEEEECCch-----hchHHhhccceEE
Confidence 356678889998873 323333444454531 0 2344555555443 4677789999999
Q ss_pred EecCCChhHHHHHHHHH
Q psy568 563 YVDYPGETSLKQIYGTF 579 (1614)
Q Consensus 563 ~i~~p~~~~l~~I~~~~ 579 (1614)
.++.|+.+++..++...
T Consensus 196 ~l~~l~~~~i~~~L~~~ 212 (365)
T PRK07471 196 RLRPLAPEDVIDALAAA 212 (365)
T ss_pred ECCCCCHHHHHHHHHHh
Confidence 99999999998887653
No 264
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.31 E-value=0.0013 Score=79.81 Aligned_cols=98 Identities=26% Similarity=0.343 Sum_probs=54.7
Q ss_pred hhhHHHHHHHHHHHHHHhccCCcc-EEEeecCCCChHHHHHHHHHHcCC------------------------eEEEEEe
Q psy568 736 LVLFDEVLDHVLRIDRIFRQPQGH-LLLIGVSGAGKTTLSRFVAFMNGL------------------------SVFQIRA 790 (1614)
Q Consensus 736 lvlf~~~i~hi~ri~Ril~~p~gh-~LLvG~~GsGKtsl~rlaA~~~~~------------------------~~~~i~~ 790 (1614)
++..+++++.+.+..+.=+ -.| +||.||+|+||||+++.+|...++ ++..++.
T Consensus 18 iiGq~~~~~~l~~~~~~~~--~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~~~~~ 95 (363)
T PRK14961 18 IIGQKHIVTAISNGLSLGR--IHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLIEIDA 95 (363)
T ss_pred ccChHHHHHHHHHHHHcCC--CCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceEEecc
Confidence 3344444544443333211 235 489999999999999999977653 2333333
Q ss_pred cCCCChhcHHHHHHHHHHHh---ccCCCcEEEEEcCCcccccchHHHHHHhhccC
Q psy568 791 HNKYTGADFDEDLRTVLRRS---GCKNEKIAFLLDESNVLESGFLERMNTLLANG 842 (1614)
Q Consensus 791 ~~~~~~~df~~~lk~~l~~a---g~~~~~~v~ll~d~~i~~~~~le~in~lL~~G 842 (1614)
...... ++++.++..+ ...++.-++++||.+-.+.. ..|.+|.+-
T Consensus 96 ~~~~~v----~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~---a~naLLk~l 143 (363)
T PRK14961 96 ASRTKV----EEMREILDNIYYSPSKSRFKVYLIDEVHMLSRH---SFNALLKTL 143 (363)
T ss_pred cccCCH----HHHHHHHHHHhcCcccCCceEEEEEChhhcCHH---HHHHHHHHH
Confidence 222333 3444444432 33455678888987665542 234555443
No 265
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.31 E-value=0.00066 Score=78.37 Aligned_cols=192 Identities=19% Similarity=0.314 Sum_probs=107.1
Q ss_pred CCccEEEeecCCCChHHHHHH-HHHHcCCe--EEEEEecCCCChhcHHHHHHHHHHH-----hc-----cCCCcEEEEEc
Q psy568 756 PQGHLLLIGVSGAGKTTLSRF-VAFMNGLS--VFQIRAHNKYTGADFDEDLRTVLRR-----SG-----CKNEKIAFLLD 822 (1614)
Q Consensus 756 p~gh~LLvG~~GsGKtsl~rl-aA~~~~~~--~~~i~~~~~~~~~df~~~lk~~l~~-----ag-----~~~~~~v~ll~ 822 (1614)
.+-|+||+|++|||||++++- +..+-+.. ...++++...+.. .++.++.. .| -.+++.++++|
T Consensus 32 ~~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tts~----~~q~~ie~~l~k~~~~~~gP~~~k~lv~fiD 107 (272)
T PF12775_consen 32 NGRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTTSN----QLQKIIESKLEKRRGRVYGPPGGKKLVLFID 107 (272)
T ss_dssp CTEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHHHH----HHHHCCCTTECECTTEEEEEESSSEEEEEEE
T ss_pred cCCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCCHH----HHHHHHhhcEEcCCCCCCCCCCCcEEEEEec
Confidence 355899999999999999874 33333433 3344444432222 23332221 11 14577899999
Q ss_pred CCccccc------chHHHHHHhhccCCCCCCCChhhHHHHHHHhHHHHHHcCCCCCCHHHHHHHHHHHHhhcceEEEEEC
Q psy568 823 ESNVLES------GFLERMNTLLANGEIPGLFEGDEYTTLMTQCKEGAQREGLMLDSNEELYKWFTQQVMKNLHVVFTMN 896 (1614)
Q Consensus 823 d~~i~~~------~~le~in~lL~~G~v~~Lf~~eE~~~i~~~~~~~~~~~~~~~~s~~~l~~~f~~rv~~nlhivl~~s 896 (1614)
|-++..+ ..+|-|-.++..| +.|+.++++ | +-=.++.+|-+|+
T Consensus 108 DlN~p~~d~ygtq~~iElLRQ~i~~~---g~yd~~~~~-----------------------~-----~~i~~i~~vaa~~ 156 (272)
T PF12775_consen 108 DLNMPQPDKYGTQPPIELLRQLIDYG---GFYDRKKLE-----------------------W-----KSIEDIQFVAAMN 156 (272)
T ss_dssp TTT-S---TTS--HHHHHHHHHHHCS---EEECTTTTE-----------------------E-----EEECSEEEEEEES
T ss_pred ccCCCCCCCCCCcCHHHHHHHHHHhc---CcccCCCcE-----------------------E-----EEEeeeEEEEecC
Confidence 9877642 2467777777776 334332210 0 1113789999999
Q ss_pred CCChhhHHHhhhCccccccceecccCCCcHHHHHHHHHHhhcccC-CCCCCCCCCCCCCcccccccCCCcchhHHHHHHH
Q psy568 897 PSSEGLKDRAATSPALFNRCVLNWFGDWSDTALYQVAKEFTSKID-LDGPQNWKAPDFFPSVCSLVSTTPSHRDSVINAC 975 (1614)
Q Consensus 897 p~~~~~r~~~~~~PaL~~~~~i~wf~~W~~eaL~~va~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 975 (1614)
|.+.. -.-.|.+.+.+.|.++.+.++++|..+=..++...- ... +... -....++++++.
T Consensus 157 p~~Gr----~~is~R~~r~f~i~~~~~p~~~sl~~If~~il~~~l~~~~--------f~~~-------v~~~~~~lv~at 217 (272)
T PF12775_consen 157 PTGGR----NPISPRFLRHFNILNIPYPSDESLNTIFSSILQSHLKNGG--------FPED-------VQKLADKLVQAT 217 (272)
T ss_dssp STTT------SHHHHHHTTEEEEE----TCCHHHHHHHHHHHHHTCHTT--------SSGG-------GCCCHHHHHHHH
T ss_pred CCCCC----CCCChHHhhheEEEEecCCChHHHHHHHHHHHhhhcccCC--------CChH-------HHHHHHHHHHHH
Confidence 97642 235778899999999999999999988877765321 000 0000 012356788888
Q ss_pred HHHHhcHHHHHHHHHHhc-CCccccCchhH
Q psy568 976 VYVHQTLHKANARLSKRG-SRTMAITPRHY 1004 (1614)
Q Consensus 976 ~~~h~~~~~~~~~~~~~~-~r~~~~tp~~y 1004 (1614)
..++..+.+ .+...- +.|+..+|...
T Consensus 218 i~ly~~i~~---~~~ptp~k~HY~FnlRDl 244 (272)
T PF12775_consen 218 IELYQKIRQ---QFLPTPSKPHYTFNLRDL 244 (272)
T ss_dssp HHHHHHHHH---HS-TTTTCTTTTSHHHHH
T ss_pred HHHHHhhhc---ccCCCCccceeeccHHHH
Confidence 888776643 444332 23444444333
No 266
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.30 E-value=0.0012 Score=85.26 Aligned_cols=129 Identities=19% Similarity=0.219 Sum_probs=76.8
Q ss_pred ccE-EEeecCCCChHHHHHHHHHHcCCe------------------------EEEEEecCCCChhcHHHHHHHHHHHhcc
Q psy568 758 GHL-LLIGVSGAGKTTLSRFVAFMNGLS------------------------VFQIRAHNKYTGADFDEDLRTVLRRSGC 812 (1614)
Q Consensus 758 gh~-LLvG~~GsGKtsl~rlaA~~~~~~------------------------~~~i~~~~~~~~~df~~~lk~~l~~ag~ 812 (1614)
.|+ ||.|++|+||||++|.+|...++. +++++-....++.++++-++.+ .....
T Consensus 38 ~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviEidAas~~kVDdIReLie~v-~~~P~ 116 (944)
T PRK14949 38 HHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNV-QYRPS 116 (944)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEEeccccccCHHHHHHHHHHH-Hhhhh
Confidence 566 899999999999999999876653 1223222224455555433333 33334
Q ss_pred CCCcEEEEEcCCcccccchHHHHHHhhcc--CCCCCCCChhhHHHHHHHhHHHHHHcCCCCCCHHHHHHHHHHHHhh
Q psy568 813 KNEKIAFLLDESNVLESGFLERMNTLLAN--GEIPGLFEGDEYTTLMTQCKEGAQREGLMLDSNEELYKWFTQQVMK 887 (1614)
Q Consensus 813 ~~~~~v~ll~d~~i~~~~~le~in~lL~~--G~v~~Lf~~eE~~~i~~~~~~~~~~~~~~~~s~~~l~~~f~~rv~~ 887 (1614)
.++..+++||+.+.....-.+.+-..|.. +.+.-++...+...|+..++..+..-.+..-+.+++..|+...+..
T Consensus 117 ~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~ 193 (944)
T PRK14949 117 RGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQ 193 (944)
T ss_pred cCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHH
Confidence 57778999999888776555444444432 3444555555555565555544444333334566666666555443
No 267
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.30 E-value=0.0034 Score=78.62 Aligned_cols=187 Identities=18% Similarity=0.232 Sum_probs=89.3
Q ss_pred eeecCCCCccccccccccCCcceeeeCcchhhHHHHHHHHHhcC---CCEEEecCCCCchHHHHHHHHhcCCCCceEEEE
Q psy568 373 WVPWSNKVPQIEVETQKVAASDVVVPTLDTVRHESLLYTWLAEH---KPLVLCGPPGSGKTMTLLSALRALPDMEVVSLN 449 (1614)
Q Consensus 373 ~~~w~~~~~~~~~~~~~~~~~~~~vpT~~t~r~~~ll~~~l~~~---~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~ 449 (1614)
-.+|.++..+.... ++.|.-.-.......+...+..+ +-+||+||+|||||++|+-+++.+ +..+....
T Consensus 6 ~~~W~~ky~P~~~~-------eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el-g~~v~Ew~ 77 (519)
T PF03215_consen 6 SEPWVEKYAPKTLD-------ELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL-GFEVQEWI 77 (519)
T ss_pred cCccchhcCCCCHH-------HhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh-CCeeEEec
Confidence 35787766443322 23333322223333344433322 347889999999999999888877 44333211
Q ss_pred cccC---C--CHHH----------HH---hHhhcccceeecCCccc--cccccCCceEEEEeccCCCCCccccCcccHHH
Q psy568 450 FSSA---T--TPEL----------LL---KTFDHYCEYRKTPNGVI--LSPIQLGKWLVLFCDEINLPDMDKYATQRVIS 509 (1614)
Q Consensus 450 ~s~~---t--~~~~----------l~---~~~~~~~~~~~~~~g~~--~~p~~~gk~~vlfiDdin~p~~d~~g~q~~le 509 (1614)
.... + ...+ .. ..|....- +..+.+.+ .+.....++-||+|||+-- .-.-++....+
T Consensus 78 np~~~~~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l-~~s~y~~l~~~g~~~~~~~kvILVEDlPN--~~~~~~~~f~~ 154 (519)
T PF03215_consen 78 NPVSFRESDNQEDDFESDFNKFDEFLSQSDKFSEFLL-RASKYSSLSMSGSNSSSNKKVILVEDLPN--VFHRDTSRFRE 154 (519)
T ss_pred CCCCccccccccccccccccccccccchhhhhccccc-cccccccccccCCCcCCCceEEEeecccc--ccchhHHHHHH
Confidence 1100 0 0000 00 11111100 11111111 1111123456777898742 22113356778
Q ss_pred HHHHHHHcCceeeCCCCceEeecCeEEEEe--ecCCCCCCC--------CCCccccccc--ccEEEecCCChhHHHHHHH
Q psy568 510 FLRQLIEQRGFYRPADKQWVSLERIQCVGA--CNPPTDPGR--------KPLSHRFLRH--VPVIYVDYPGETSLKQIYG 577 (1614)
Q Consensus 510 lLrqlld~~~~~~~~~~~~~~~~~~~~iaa--~n~~~~~g~--------~~l~~r~~r~--f~~i~i~~p~~~~l~~I~~ 577 (1614)
.|++++..++.. .+.||.+ -...++.+. .-+++.++.+ ...|.+.+-....+.+.++
T Consensus 155 ~L~~~l~~~~~~-----------PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~~I~FNpIa~T~mkKaL~ 223 (519)
T PF03215_consen 155 ALRQYLRSSRCL-----------PLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGITRIKFNPIAPTFMKKALK 223 (519)
T ss_pred HHHHHHHcCCCC-----------CEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCceEEEecCCCHHHHHHHHH
Confidence 888888764422 3555555 222221111 2356666665 4467777777777666666
Q ss_pred HHHH
Q psy568 578 TFSR 581 (1614)
Q Consensus 578 ~~~~ 581 (1614)
.++.
T Consensus 224 rI~~ 227 (519)
T PF03215_consen 224 RILK 227 (519)
T ss_pred HHHH
Confidence 5544
No 268
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=97.29 E-value=0.0011 Score=78.89 Aligned_cols=89 Identities=17% Similarity=0.125 Sum_probs=54.7
Q ss_pred ceEEEEeccCCCCCccc--cC----cccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCCCccccccc
Q psy568 485 KWLVLFCDEINLPDMDK--YA----TQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLRH 558 (1614)
Q Consensus 485 k~~vlfiDdin~p~~d~--~g----~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r~ 558 (1614)
...|+|||||+...... .| ...+..-|..+++...+-. ....+.-.++.|||+..-.. .....|=|.|.-|
T Consensus 249 ~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~--k~~~i~T~~ILFI~~GAF~~-~kp~DlIPEl~GR 325 (443)
T PRK05201 249 QNGIVFIDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVST--KYGMVKTDHILFIASGAFHV-SKPSDLIPELQGR 325 (443)
T ss_pred cCCEEEEEcchhhcccCCCCCCCCCccchhcccccccccceeee--cceeEECCceeEEecCCcCC-CChhhccHHHhCc
Confidence 45799999999644221 11 1223333445555433222 11234446788998766432 1223577889999
Q ss_pred cc-EEEecCCChhHHHHHH
Q psy568 559 VP-VIYVDYPGETSLKQIY 576 (1614)
Q Consensus 559 f~-~i~i~~p~~~~l~~I~ 576 (1614)
|. ++.+..++.+++.+|+
T Consensus 326 ~Pi~v~L~~L~~~dL~~IL 344 (443)
T PRK05201 326 FPIRVELDALTEEDFVRIL 344 (443)
T ss_pred cceEEECCCCCHHHHHHHh
Confidence 98 5688899999999996
No 269
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.28 E-value=0.0015 Score=82.09 Aligned_cols=124 Identities=18% Similarity=0.253 Sum_probs=69.6
Q ss_pred hhHHHHHHHHHHHHHHhccCC-cc-EEEeecCCCChHHHHHHHHHHcCC------------------------eEEEEEe
Q psy568 737 VLFDEVLDHVLRIDRIFRQPQ-GH-LLLIGVSGAGKTTLSRFVAFMNGL------------------------SVFQIRA 790 (1614)
Q Consensus 737 vlf~~~i~hi~ri~Ril~~p~-gh-~LLvG~~GsGKtsl~rlaA~~~~~------------------------~~~~i~~ 790 (1614)
+-.+.++..+. +.+...+ .| +||.||+|+|||++++.+|...++ ++++++.
T Consensus 19 iGq~~~v~~L~---~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieida 95 (546)
T PRK14957 19 AGQQHALNSLV---HALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDA 95 (546)
T ss_pred cCcHHHHHHHH---HHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEeec
Confidence 33344444433 3344333 34 679999999999999999976553 4445544
Q ss_pred cCCCChhcHHHHHHHHHHHhccCCCcEEEEEcCCcccccchHHHHHHhhcc--CCCCCCCChhhHHHHHHHhHHHH
Q psy568 791 HNKYTGADFDEDLRTVLRRSGCKNEKIAFLLDESNVLESGFLERMNTLLAN--GEIPGLFEGDEYTTLMTQCKEGA 864 (1614)
Q Consensus 791 ~~~~~~~df~~~lk~~l~~ag~~~~~~v~ll~d~~i~~~~~le~in~lL~~--G~v~~Lf~~eE~~~i~~~~~~~~ 864 (1614)
....+..+.++-+ ..+......++..++++||.+-.+..-.+.+...|.. +.+.=+|...+...+...++..+
T Consensus 96 as~~gvd~ir~ii-~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~~kil~tI~SRc 170 (546)
T PRK14957 96 ASRTGVEETKEIL-DNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRC 170 (546)
T ss_pred ccccCHHHHHHHH-HHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECChhhhhhhHHHhe
Confidence 3344444443322 2223233456677899998766666555555555544 23334555555555554444333
No 270
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=97.28 E-value=0.001 Score=84.68 Aligned_cols=128 Identities=19% Similarity=0.206 Sum_probs=76.3
Q ss_pred ccE-EEeecCCCChHHHHHHHHHHcCC------------------------eEEEEEecCCCChhcHHHHHHHHHHHhcc
Q psy568 758 GHL-LLIGVSGAGKTTLSRFVAFMNGL------------------------SVFQIRAHNKYTGADFDEDLRTVLRRSGC 812 (1614)
Q Consensus 758 gh~-LLvG~~GsGKtsl~rlaA~~~~~------------------------~~~~i~~~~~~~~~df~~~lk~~l~~ag~ 812 (1614)
.|+ ||.|+.|+||||+++.+|...++ ++++++-....++.++++-+.. +.....
T Consensus 38 ~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D~ieidaas~~~VddiR~li~~-~~~~p~ 116 (647)
T PRK07994 38 HHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVDLIEIDAASRTKVEDTRELLDN-VQYAPA 116 (647)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCCceeecccccCCHHHHHHHHHH-HHhhhh
Confidence 465 89999999999999999987665 2444544333455555543333 333345
Q ss_pred CCCcEEEEEcCCcccccchHHHHHHhhcc--CCCCCCCChhhHHHHHHHhHHHHHHcCCCCCCHHHHHHHHHHHHh
Q psy568 813 KNEKIAFLLDESNVLESGFLERMNTLLAN--GEIPGLFEGDEYTTLMTQCKEGAQREGLMLDSNEELYKWFTQQVM 886 (1614)
Q Consensus 813 ~~~~~v~ll~d~~i~~~~~le~in~lL~~--G~v~~Lf~~eE~~~i~~~~~~~~~~~~~~~~s~~~l~~~f~~rv~ 886 (1614)
.++.-|+++|+.+..+..-.+.+-..|.. +.+.=++...+...|...++..+..-.+...+.+++..+....++
T Consensus 117 ~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~ 192 (647)
T PRK07994 117 RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRQQLEHILQ 192 (647)
T ss_pred cCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHHHhhheEeeCCCCCHHHHHHHHHHHHH
Confidence 67778899999887766444333333332 444455655566666655555554444333455555555554443
No 271
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.26 E-value=0.00081 Score=85.56 Aligned_cols=24 Identities=33% Similarity=0.625 Sum_probs=20.7
Q ss_pred CCEEEecCCCCchHHHHHHHHhcC
Q psy568 417 KPLVLCGPPGSGKTMTLLSALRAL 440 (1614)
Q Consensus 417 ~~vLL~Gp~GtGKT~lv~~~~~~l 440 (1614)
+-++|+||||||||++++.+++.+
T Consensus 111 ~illL~GP~GsGKTTl~~~la~~l 134 (637)
T TIGR00602 111 RILLITGPSGCGKSTTIKILSKEL 134 (637)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 349999999999999998888765
No 272
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=97.23 E-value=0.0034 Score=71.11 Aligned_cols=148 Identities=16% Similarity=0.161 Sum_probs=83.9
Q ss_pred HHHHHhcCCCEEEecCCCCchHHHHHHHHhcC--CCCceEEEEcccCCCHHHHHhHhhcccceeecCCccccccccCCce
Q psy568 409 LYTWLAEHKPLVLCGPPGSGKTMTLLSALRAL--PDMEVVSLNFSSATTPELLLKTFDHYCEYRKTPNGVILSPIQLGKW 486 (1614)
Q Consensus 409 l~~~l~~~~~vLL~Gp~GtGKT~lv~~~~~~l--~~~~~~~i~~s~~t~~~~l~~~~~~~~~~~~~~~g~~~~p~~~gk~ 486 (1614)
...+.....|.|+.|+|||||-.+++.+-... .+.+++.+||.+--+. .....+-+.-......+|.+-.+ .|
T Consensus 220 A~k~AmlDAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe~-~aEsElFG~apg~~gk~GffE~A--ng-- 294 (511)
T COG3283 220 AQKLAMLDAPLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPED-AAESELFGHAPGDEGKKGFFEQA--NG-- 294 (511)
T ss_pred HHHhhccCCCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCchh-HhHHHHhcCCCCCCCccchhhhc--cC--
Confidence 34445568999999999999999887665443 3568999999754432 11111111111112223433333 22
Q ss_pred EEEEeccCCCCCccccCcccH-HHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCC--CCCCCCCcccccccccEEE
Q psy568 487 LVLFCDEINLPDMDKYATQRV-ISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPT--DPGRKPLSHRFLRHVPVIY 563 (1614)
Q Consensus 487 ~vlfiDdin~p~~d~~g~q~~-lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~--~~g~~~l~~r~~r~f~~i~ 563 (1614)
..+|+|+|-- -+... ..+||.+ ..|.|- +-+.+.-...|+++|||+..+- ...+-.+-..+.-|.+|+.
T Consensus 295 GTVlLDeIgE------mSp~lQaKLLRFL-~DGtFR-RVGee~Ev~vdVRVIcatq~nL~~lv~~g~fReDLfyRLNVLt 366 (511)
T COG3283 295 GTVLLDEIGE------MSPRLQAKLLRFL-NDGTFR-RVGEDHEVHVDVRVICATQVNLVELVQKGKFREDLFYRLNVLT 366 (511)
T ss_pred CeEEeehhhh------cCHHHHHHHHHHh-cCCcee-ecCCcceEEEEEEEEecccccHHHHHhcCchHHHHHHHhheee
Confidence 3466799965 22223 4566655 444443 3333444556899999987652 0011133444556778888
Q ss_pred ecCCCh
Q psy568 564 VDYPGE 569 (1614)
Q Consensus 564 i~~p~~ 569 (1614)
+..|.-
T Consensus 367 l~~PpL 372 (511)
T COG3283 367 LNLPPL 372 (511)
T ss_pred ecCCcc
Confidence 777654
No 273
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=97.23 E-value=0.0051 Score=78.75 Aligned_cols=36 Identities=22% Similarity=0.449 Sum_probs=30.4
Q ss_pred HHHHHHHHhcCCCEEEecCCCCchHHHHHHHHhcCC
Q psy568 406 ESLLYTWLAEHKPLVLCGPPGSGKTMTLLSALRALP 441 (1614)
Q Consensus 406 ~~ll~~~l~~~~~vLL~Gp~GtGKT~lv~~~~~~l~ 441 (1614)
...+..++..+.+++++||||||||++++.+++.++
T Consensus 40 ~~~L~~~~~~~~~~l~~G~~G~GKttla~~l~~~l~ 75 (637)
T PRK13765 40 VEVIKKAAKQRRHVMMIGSPGTGKSMLAKAMAELLP 75 (637)
T ss_pred HHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHcC
Confidence 345666778889999999999999999999887764
No 274
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=97.23 E-value=1.4 Score=57.08 Aligned_cols=85 Identities=13% Similarity=0.218 Sum_probs=44.3
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy568 1000 TPRHYLDFINHFVKLYREKCSELEEQQLHLNVGLG--KIAETVEQVEEMQKSLAVKSQELQSKNEAANLKLKEMIKDQQE 1077 (1614)
Q Consensus 1000 tp~~yl~~l~~f~~l~~~k~~~~~~~~~~l~~gL~--kl~~~~~~v~~l~~~L~~~~~~l~~~~~~~~~~l~~i~~~~~~ 1077 (1614)
|-..|-.+=+.|..+......++..........++ ++..|...++.+...+...+..+.....+.+.++..=.+.+.+
T Consensus 62 s~~~f~~w~~~~~~i~~~~~~~ie~~l~~ae~~~~~~~f~~a~~~~~~~~~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~ 141 (569)
T PRK04778 62 SEEKFEEWRQKWDEIVTNSLPDIEEQLFEAEELNDKFRFRKAKHEINEIESLLDLIEEDIEQILEELQELLESEEKNREE 141 (569)
T ss_pred cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456666666666666666666666555555555 3444455555555555555555544444444444444444444
Q ss_pred HHHHHHH
Q psy568 1078 AEKRKVQ 1084 (1614)
Q Consensus 1078 ~e~~~~~ 1084 (1614)
++..+..
T Consensus 142 v~~l~~~ 148 (569)
T PRK04778 142 VEQLKDL 148 (569)
T ss_pred HHHHHHH
Confidence 4333333
No 275
>PRK06526 transposase; Provisional
Probab=97.22 E-value=0.00032 Score=79.99 Aligned_cols=128 Identities=21% Similarity=0.360 Sum_probs=67.8
Q ss_pred HHhcCCCEEEecCCCCchHHHHHHHHhcC--CCCceEEEEcccCCCHHHHHhHhhcccceeecCCccc---cccccCCce
Q psy568 412 WLAEHKPLVLCGPPGSGKTMTLLSALRAL--PDMEVVSLNFSSATTPELLLKTFDHYCEYRKTPNGVI---LSPIQLGKW 486 (1614)
Q Consensus 412 ~l~~~~~vLL~Gp~GtGKT~lv~~~~~~l--~~~~~~~i~~s~~t~~~~l~~~~~~~~~~~~~~~g~~---~~p~~~gk~ 486 (1614)
++..+.+++|+||||||||.++..+.... .+..+..+ +...+...+..... .|.+ .... .+.
T Consensus 94 fi~~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~------t~~~l~~~l~~~~~-----~~~~~~~l~~l--~~~ 160 (254)
T PRK06526 94 FVTGKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFA------TAAQWVARLAAAHH-----AGRLQAELVKL--GRY 160 (254)
T ss_pred hhhcCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhh------hHHHHHHHHHHHHh-----cCcHHHHHHHh--ccC
Confidence 45678999999999999999998887654 23333332 22333333321100 0111 1111 223
Q ss_pred EEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCC-----CCCCC----Ccccccc
Q psy568 487 LVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTD-----PGRKP----LSHRFLR 557 (1614)
Q Consensus 487 ~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~-----~g~~~----l~~r~~r 557 (1614)
-+++|||+.....+. ...++|-++++.+ |.. -.+|.|+|.+.+ .|... +-.|+..
T Consensus 161 dlLIIDD~g~~~~~~----~~~~~L~~li~~r--~~~----------~s~IitSn~~~~~w~~~~~d~~~a~ai~dRl~~ 224 (254)
T PRK06526 161 PLLIVDEVGYIPFEP----EAANLFFQLVSSR--YER----------ASLIVTSNKPFGRWGEVFGDDVVAAAMIDRLVH 224 (254)
T ss_pred CEEEEcccccCCCCH----HHHHHHHHHHHHH--Hhc----------CCEEEEcCCCHHHHHHHcCChHHHHHHHHHHhc
Confidence 466789999754433 2345566666532 211 124666666531 11111 1246666
Q ss_pred cccEEEecCCC
Q psy568 558 HVPVIYVDYPG 568 (1614)
Q Consensus 558 ~f~~i~i~~p~ 568 (1614)
+..++.+.-+|
T Consensus 225 ~~~~i~~~g~s 235 (254)
T PRK06526 225 HAEVISLKGDS 235 (254)
T ss_pred CceEEeecCCC
Confidence 77777777554
No 276
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.22 E-value=0.0023 Score=85.36 Aligned_cols=144 Identities=21% Similarity=0.319 Sum_probs=83.8
Q ss_pred cEEEeecCCCChHHHHHHHHHHcCCeEEEEEecCCCChhcHH-----------HHHHHHHHHhccCCCcEEEEEcCCccc
Q psy568 759 HLLLIGVSGAGKTTLSRFVAFMNGLSVFQIRAHNKYTGADFD-----------EDLRTVLRRSGCKNEKIAFLLDESNVL 827 (1614)
Q Consensus 759 h~LLvG~~GsGKtsl~rlaA~~~~~~~~~i~~~~~~~~~df~-----------~~lk~~l~~ag~~~~~~v~ll~d~~i~ 827 (1614)
+++|+||+|+|||++++.+|...+.+++.+.+....+.+++. +.+...+..++..+ + ++++|+-+-.
T Consensus 349 ~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~~~~~g~~~g~i~~~l~~~~~~~-~-villDEidk~ 426 (775)
T TIGR00763 349 ILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRRTYVGAMPGRIIQGLKKAKTKN-P-LFLLDEIDKI 426 (775)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCCCceeCCCCchHHHHHHHhCcCC-C-EEEEechhhc
Confidence 699999999999999999999999999998875443433332 23455666665433 4 6788875443
Q ss_pred ccchHHHHHHhhccCCCCCCCChhhHHHHHHHhHHHHHHcCCCCCCHHHHHHHHHH-HHh-hcceEEEEECCCChhhHHH
Q psy568 828 ESGFLERMNTLLANGEIPGLFEGDEYTTLMTQCKEGAQREGLMLDSNEELYKWFTQ-QVM-KNLHVVFTMNPSSEGLKDR 905 (1614)
Q Consensus 828 ~~~~le~in~lL~~G~v~~Lf~~eE~~~i~~~~~~~~~~~~~~~~s~~~l~~~f~~-rv~-~nlhivl~~sp~~~~~r~~ 905 (1614)
.+.+ .| +-...+++.+.+. +.+...+ .+.. .+. ++.-++.+-++. .
T Consensus 427 ~~~~---------~~--------~~~~aLl~~ld~~--~~~~f~d-------~~~~~~~d~s~v~~I~TtN~~-~----- 474 (775)
T TIGR00763 427 GSSF---------RG--------DPASALLEVLDPE--QNNAFSD-------HYLDVPFDLSKVIFIATANSI-D----- 474 (775)
T ss_pred CCcc---------CC--------CHHHHHHHhcCHH--hcCcccc-------ccCCceeccCCEEEEEecCCc-h-----
Confidence 3211 01 1111122211111 0010000 0000 000 233333333332 1
Q ss_pred hhhCccccccceecccCCCcHHHHHHHHHHhh
Q psy568 906 AATSPALFNRCVLNWFGDWSDTALYQVAKEFT 937 (1614)
Q Consensus 906 ~~~~PaL~~~~~i~wf~~W~~eaL~~va~~~l 937 (1614)
...|+|.++|.+.-|.+.+.+.+..++..++
T Consensus 475 -~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 475 -TIPRPLLDRMEVIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred -hCCHHHhCCeeEEecCCCCHHHHHHHHHHHH
Confidence 3468999999999999999999999998876
No 277
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=97.21 E-value=0.0048 Score=78.43 Aligned_cols=180 Identities=18% Similarity=0.325 Sum_probs=106.3
Q ss_pred hhhHHHHHHHHHHHHHHhccCCccEEEeecCCCChHHHHHHHHHHc----------CCeEEEEEecC-CCChhcHHHHHH
Q psy568 736 LVLFDEVLDHVLRIDRIFRQPQGHLLLIGVSGAGKTTLSRFVAFMN----------GLSVFQIRAHN-KYTGADFDEDLR 804 (1614)
Q Consensus 736 lvlf~~~i~hi~ri~Ril~~p~gh~LLvG~~GsGKtsl~rlaA~~~----------~~~~~~i~~~~-~~~~~df~~~lk 804 (1614)
++-...+++.+... +......|+||+|++|+|||+++|++...+ +.++++++.+. .++...+.+.+-
T Consensus 67 iiGqs~~i~~l~~a--l~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~~~~~~~~~~~li 144 (531)
T TIGR02902 67 IIGQEEGIKALKAA--LCGPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTARFDERGIADPLI 144 (531)
T ss_pred eeCcHHHHHHHHHH--HhCCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccccccCCccccchhhc
Confidence 34444555444322 233334689999999999999999987542 35677777653 233222322221
Q ss_pred -----HHHHHh------cc---------CCCcEEEEEcCCcccccchHHHHHHhhccCCCC---CCCChhhHHHHHHHhH
Q psy568 805 -----TVLRRS------GC---------KNEKIAFLLDESNVLESGFLERMNTLLANGEIP---GLFEGDEYTTLMTQCK 861 (1614)
Q Consensus 805 -----~~l~~a------g~---------~~~~~v~ll~d~~i~~~~~le~in~lL~~G~v~---~Lf~~eE~~~i~~~~~ 861 (1614)
..+..+ |. +..+.++++|+-+-.++...+.|-.+|..|.+- +.|+.++-
T Consensus 145 ~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~~~q~~LL~~Le~~~~~~~~~~~~~~~~-------- 216 (531)
T TIGR02902 145 GSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHPVQMNKLLKVLEDRKVFLDSAYYNSENP-------- 216 (531)
T ss_pred CCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCHHHHHHHHHHHHhCeeeeccccccccCc--------
Confidence 112211 11 123457888888777777766666666555321 12221110
Q ss_pred HHHHHcCCCCCCHHHHHHHHHHHHhhcceEEEEECCCChhhHHHhhhCccccccceecccCCCcHHHHHHHHHHhhcccC
Q psy568 862 EGAQREGLMLDSNEELYKWFTQQVMKNLHVVFTMNPSSEGLKDRAATSPALFNRCVLNWFGDWSDTALYQVAKEFTSKID 941 (1614)
Q Consensus 862 ~~~~~~~~~~~s~~~l~~~f~~rv~~nlhivl~~sp~~~~~r~~~~~~PaL~~~~~i~wf~~W~~eaL~~va~~~l~~~~ 941 (1614)
..+..+-..|.+.+..++.++.+.+..-. ..-|+|.++|....|.+.+.+.+..++++.++...
T Consensus 217 ----------~~~~~~~~~~~~~~~~d~rlI~ATt~~p~------~L~paLrsR~~~I~f~pL~~eei~~Il~~~a~k~~ 280 (531)
T TIGR02902 217 ----------NIPSHIHDIFQNGLPADFRLIGATTRNPE------EIPPALRSRCVEIFFRPLLDEEIKEIAKNAAEKIG 280 (531)
T ss_pred ----------ccccchhhhcccCcccceEEEEEecCCcc------cCChHHhhhhheeeCCCCCHHHHHHHHHHHHHHcC
Confidence 01122334444556668888776543222 24688999999999999999999999999887643
No 278
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.21 E-value=0.0023 Score=76.63 Aligned_cols=81 Identities=16% Similarity=0.211 Sum_probs=52.8
Q ss_pred cEEE-eecCCCChHHHHHHHHHHcCCeEEEEEecCCCChhcHHHHHHHHHHHhccCCCcEEEEEcCCccc-ccchHHHHH
Q psy568 759 HLLL-IGVSGAGKTTLSRFVAFMNGLSVFQIRAHNKYTGADFDEDLRTVLRRSGCKNEKIAFLLDESNVL-ESGFLERMN 836 (1614)
Q Consensus 759 h~LL-vG~~GsGKtsl~rlaA~~~~~~~~~i~~~~~~~~~df~~~lk~~l~~ag~~~~~~v~ll~d~~i~-~~~~le~in 836 (1614)
|++| .|++|+|||++++.+|...+.++..++... ......++.++.........+.+.++++||.+.. ..+..+.+.
T Consensus 44 ~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~-~~~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~ 122 (316)
T PHA02544 44 NMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD-CRIDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGLADAQRHLR 122 (316)
T ss_pred eEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc-ccHHHHHHHHHHHHHhhcccCCCeEEEEECcccccCHHHHHHHH
Confidence 4555 899999999999999998888888888765 2233333445444444444455678888886544 333444444
Q ss_pred Hhhc
Q psy568 837 TLLA 840 (1614)
Q Consensus 837 ~lL~ 840 (1614)
.++.
T Consensus 123 ~~le 126 (316)
T PHA02544 123 SFME 126 (316)
T ss_pred HHHH
Confidence 4443
No 279
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.21 E-value=0.0013 Score=79.14 Aligned_cols=126 Identities=21% Similarity=0.293 Sum_probs=77.5
Q ss_pred CCC-EEEecCCCCchHHHHHHHHhcCCC-----------------------CceEEEEcccCCCHHHHHhHhhcccceee
Q psy568 416 HKP-LVLCGPPGSGKTMTLLSALRALPD-----------------------MEVVSLNFSSATTPELLLKTFDHYCEYRK 471 (1614)
Q Consensus 416 ~~~-vLL~Gp~GtGKT~lv~~~~~~l~~-----------------------~~~~~i~~s~~t~~~~l~~~~~~~~~~~~ 471 (1614)
..| +||+||||+|||+++..+++.+.+ ..+..++-|...........+.......
T Consensus 23 ~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~i~~~~vr~~~~~~- 101 (325)
T COG0470 23 LPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKIDIIVEQVRELAEFL- 101 (325)
T ss_pred CCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCcchHHHHHHHHHHh-
Confidence 345 999999999999999999987641 2455666665544221222221111111
Q ss_pred cCCccccccccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCCC
Q psy568 472 TPNGVILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPL 551 (1614)
Q Consensus 472 ~~~g~~~~p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l 551 (1614)
. ..|. .|++-|++|||++.-.. .....++-.++.. ..+..||.+||.+. .+
T Consensus 102 ----~-~~~~-~~~~kviiidead~mt~------~A~nallk~lEep------------~~~~~~il~~n~~~-----~i 152 (325)
T COG0470 102 ----S-ESPL-EGGYKVVIIDEADKLTE------DAANALLKTLEEP------------PKNTRFILITNDPS-----KI 152 (325)
T ss_pred ----c-cCCC-CCCceEEEeCcHHHHhH------HHHHHHHHHhccC------------CCCeEEEEEcCChh-----hc
Confidence 0 1111 35567788899998433 3444455554431 13677888888654 56
Q ss_pred cccccccccEEEecCCChhH
Q psy568 552 SHRFLRHVPVIYVDYPGETS 571 (1614)
Q Consensus 552 ~~r~~r~f~~i~i~~p~~~~ 571 (1614)
-+-+.+|+..+.+..|+...
T Consensus 153 l~tI~SRc~~i~f~~~~~~~ 172 (325)
T COG0470 153 LPTIRSRCQRIRFKPPSRLE 172 (325)
T ss_pred cchhhhcceeeecCCchHHH
Confidence 77889999999998755433
No 280
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.21 E-value=0.0018 Score=68.93 Aligned_cols=138 Identities=28% Similarity=0.306 Sum_probs=85.9
Q ss_pred hHHHHHHHHHHHHHhccEEEEecCCCCChhhHHHHHHHHHHHhhcC-----------------CceEEEeCCCCCCcCcc
Q psy568 28 PWMEKVLQLYQISNLNHGLMMVGPSGSGKSTAWKVLLKALERYEGV-----------------EGVAHIIDPKAISKEAL 90 (1614)
Q Consensus 28 ~~~~K~~qL~e~~~~r~gVmlvG~~gsGKTt~~~~L~~al~~~~~~-----------------~~~~~~inPkais~~eL 90 (1614)
..++...++++.=+..|+.++.||+|+||+++...+++.+.--... ....+.++|..-..
T Consensus 4 ~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~--- 80 (162)
T PF13177_consen 4 EIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKK--- 80 (162)
T ss_dssp HHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSS---
T ss_pred HHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccc---
Confidence 4566667788888889999999999999999999999987322111 11122332221100
Q ss_pred cccccCCCCccccchHHHHHHHHHhhhc--CCCCCceEEEEccCCChhhhhhhhhhhcCCCccccCCCceeeCCCCceEE
Q psy568 91 YGVLDPNTREWTDGLFTHILRRIIDNVR--GEISKRQWIIFDGDVDPEWVENLNSVLDDNKLLTLPNGERLSLPPNIRIM 168 (1614)
Q Consensus 91 yG~~d~~t~eW~DGvls~i~r~~~~~~~--~~~~~~~WivfDG~vd~~WiE~lnsvLDdnk~L~L~nGeri~l~~~~~~i 168 (1614)
.+--.-+|+...... ......+-+|+|. +|..=.+.-|.+| |+|-= -|+++.||
T Consensus 81 -------------~i~i~~ir~i~~~~~~~~~~~~~KviiI~~-ad~l~~~a~NaLL---K~LEe-------pp~~~~fi 136 (162)
T PF13177_consen 81 -------------SIKIDQIREIIEFLSLSPSEGKYKVIIIDE-ADKLTEEAQNALL---KTLEE-------PPENTYFI 136 (162)
T ss_dssp -------------SBSHHHHHHHHHHCTSS-TTSSSEEEEEET-GGGS-HHHHHHHH---HHHHS-------TTTTEEEE
T ss_pred -------------hhhHHHHHHHHHHHHHHHhcCCceEEEeeh-HhhhhHHHHHHHH---HHhcC-------CCCCEEEE
Confidence 122234455443222 1223578899987 5666667777777 33321 35689999
Q ss_pred EEeccccccCccccccceeEEecC
Q psy568 169 FEVQDLKYATLATVSRCGMIWFSE 192 (1614)
Q Consensus 169 FEv~dL~~ASPAtVSRcgmv~~~~ 192 (1614)
+-++++...-|...|||-.|++.+
T Consensus 137 L~t~~~~~il~TI~SRc~~i~~~~ 160 (162)
T PF13177_consen 137 LITNNPSKILPTIRSRCQVIRFRP 160 (162)
T ss_dssp EEES-GGGS-HHHHTTSEEEEE--
T ss_pred EEECChHHChHHHHhhceEEecCC
Confidence 999999999999999999999876
No 281
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.21 E-value=0.0016 Score=85.81 Aligned_cols=128 Identities=18% Similarity=0.220 Sum_probs=75.2
Q ss_pred cc-EEEeecCCCChHHHHHHHHHHcCC--------------------------eEEEEEecCCCChhcHHHHHHHHHHHh
Q psy568 758 GH-LLLIGVSGAGKTTLSRFVAFMNGL--------------------------SVFQIRAHNKYTGADFDEDLRTVLRRS 810 (1614)
Q Consensus 758 gh-~LLvG~~GsGKtsl~rlaA~~~~~--------------------------~~~~i~~~~~~~~~df~~~lk~~l~~a 810 (1614)
.| .||.|+.|+||||+++++|..++| ++++|+-....++.+.++ |+.-+...
T Consensus 37 ~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~dv~eidaas~~~Vd~iR~-l~~~~~~~ 115 (824)
T PRK07764 37 NHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLDVTEIDAASHGGVDDARE-LRERAFFA 115 (824)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCcEEEecccccCCHHHHHH-HHHHHHhc
Confidence 46 589999999999999999877654 234443322334444443 22222223
Q ss_pred ccCCCcEEEEEcCCcccccchHHHHHHhhcc--CCCCCCCChhhHHHHHHHhHHHHHHcCCCCCCHHHHHHHHHHHHh
Q psy568 811 GCKNEKIAFLLDESNVLESGFLERMNTLLAN--GEIPGLFEGDEYTTLMTQCKEGAQREGLMLDSNEELYKWFTQQVM 886 (1614)
Q Consensus 811 g~~~~~~v~ll~d~~i~~~~~le~in~lL~~--G~v~~Lf~~eE~~~i~~~~~~~~~~~~~~~~s~~~l~~~f~~rv~ 886 (1614)
...++.-+|+|++.+.....-.+.|..+|.. +.+.=+|...+.+.|+..++..+..-.+...+.+++.+|..+.++
T Consensus 116 p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~ 193 (824)
T PRK07764 116 PAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICA 193 (824)
T ss_pred hhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHH
Confidence 3456677888999887776655555555544 444456666666666665555443332222355555555554443
No 282
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.21 E-value=0.0016 Score=67.72 Aligned_cols=73 Identities=30% Similarity=0.371 Sum_probs=50.1
Q ss_pred cCCccEEEeecCCCChHHHHHHHHHHc---CCeEEEEEecCCCChhcHHHHHH----HHHHHhccCCCcEEEEEcCCccc
Q psy568 755 QPQGHLLLIGVSGAGKTTLSRFVAFMN---GLSVFQIRAHNKYTGADFDEDLR----TVLRRSGCKNEKIAFLLDESNVL 827 (1614)
Q Consensus 755 ~p~gh~LLvG~~GsGKtsl~rlaA~~~---~~~~~~i~~~~~~~~~df~~~lk----~~l~~ag~~~~~~v~ll~d~~i~ 827 (1614)
.++++++++|++|+|||++++.++... +..++.+..+..+.......... ..........++.++++||.+..
T Consensus 17 ~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~ 96 (151)
T cd00009 17 PPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSL 96 (151)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhh
Confidence 356689999999999999999999887 88888887765544333222221 22222334556788999887543
No 283
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.21 E-value=0.0097 Score=72.03 Aligned_cols=47 Identities=17% Similarity=0.318 Sum_probs=32.0
Q ss_pred hhcceEEEEECCCChhhHHHhhhCccccccceecccCCCcHHHHHHHHHHhhcc
Q psy568 886 MKNLHVVFTMNPSSEGLKDRAATSPALFNRCVLNWFGDWSDTALYQVAKEFTSK 939 (1614)
Q Consensus 886 ~~nlhivl~~sp~~~~~r~~~~~~PaL~~~~~i~wf~~W~~eaL~~va~~~l~~ 939 (1614)
..+.++|++.+... ...|.|.++|...-|.+-+.+.+..+....+..
T Consensus 153 ~~~~~~Il~~~~~~-------~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~ 199 (337)
T PRK12402 153 SRTCRFIIATRQPS-------KLIPPIRSRCLPLFFRAPTDDELVDVLESIAEA 199 (337)
T ss_pred cCCCeEEEEeCChh-------hCchhhcCCceEEEecCCCHHHHHHHHHHHHHH
Confidence 34667777765321 235778888888888888888887777665543
No 284
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.20 E-value=0.0023 Score=76.47 Aligned_cols=137 Identities=15% Similarity=0.108 Sum_probs=84.5
Q ss_pred HHHHHHHhcC---CCEEEecCCCCchHHHHHHHHhcCCCC-----------------------ceEEEEcc-cCCCHHHH
Q psy568 407 SLLYTWLAEH---KPLVLCGPPGSGKTMTLLSALRALPDM-----------------------EVVSLNFS-SATTPELL 459 (1614)
Q Consensus 407 ~ll~~~l~~~---~~vLL~Gp~GtGKT~lv~~~~~~l~~~-----------------------~~~~i~~s-~~t~~~~l 459 (1614)
..+..++..| +..||+||+|+||++++..+++.+... .+..+... .....+++
T Consensus 16 ~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~~~~~~i~id~i 95 (329)
T PRK08058 16 KMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVAPDGQSIKKDQI 95 (329)
T ss_pred HHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEeccccccCCHHHH
Confidence 3455566655 345999999999999999988765211 12222222 12333444
Q ss_pred HhHhhcccceeecCCccccccccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEe
Q psy568 460 LKTFDHYCEYRKTPNGVILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGA 539 (1614)
Q Consensus 460 ~~~~~~~~~~~~~~~g~~~~p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa 539 (1614)
....+. +. ..|. .|.+=|++||+++. -+......|+-.++.- .+++.||.+
T Consensus 96 r~l~~~-~~---------~~~~-~~~~kvviI~~a~~------~~~~a~NaLLK~LEEP------------p~~~~~Il~ 146 (329)
T PRK08058 96 RYLKEE-FS---------KSGV-ESNKKVYIIEHADK------MTASAANSLLKFLEEP------------SGGTTAILL 146 (329)
T ss_pred HHHHHH-Hh---------hCCc-ccCceEEEeehHhh------hCHHHHHHHHHHhcCC------------CCCceEEEE
Confidence 443321 11 1222 34455677899987 3444555666666641 124556666
Q ss_pred ecCCCCCCCCCCcccccccccEEEecCCChhHHHHHHH
Q psy568 540 CNPPTDPGRKPLSHRFLRHVPVIYVDYPGETSLKQIYG 577 (1614)
Q Consensus 540 ~n~~~~~g~~~l~~r~~r~f~~i~i~~p~~~~l~~I~~ 577 (1614)
++.+. .+.+.+.+|+.++.+..|+.+++..++.
T Consensus 147 t~~~~-----~ll~TIrSRc~~i~~~~~~~~~~~~~L~ 179 (329)
T PRK08058 147 TENKH-----QILPTILSRCQVVEFRPLPPESLIQRLQ 179 (329)
T ss_pred eCChH-----hCcHHHHhhceeeeCCCCCHHHHHHHHH
Confidence 65432 6888899999999999999999877764
No 285
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=97.20 E-value=0.002 Score=79.27 Aligned_cols=204 Identities=15% Similarity=0.106 Sum_probs=117.8
Q ss_pred CcchhhHHHHHHHHHhcCCCEEEecCCCCchHHHHHHHHhcCC-CCceEEEEcccCCCH---HHHHhHhhcccc--eeec
Q psy568 399 TLDTVRHESLLYTWLAEHKPLVLCGPPGSGKTMTLLSALRALP-DMEVVSLNFSSATTP---ELLLKTFDHYCE--YRKT 472 (1614)
Q Consensus 399 T~~t~r~~~ll~~~l~~~~~vLL~Gp~GtGKT~lv~~~~~~l~-~~~~~~i~~s~~t~~---~~l~~~~~~~~~--~~~~ 472 (1614)
-+.+.+....++.......|+++.|+||+||-.+++.+-.+.. ..+++.+||.+.... +.+.+...+.+. +++.
T Consensus 319 d~s~a~l~rk~~rv~~~~~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~GafTga~~kG 398 (606)
T COG3284 319 DPSRATLLRKAERVAATDLPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAGAFTGARRKG 398 (606)
T ss_pred CHHHHHHHHHHHHHhhcCCCeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhccCccccccchhcc
Confidence 3456677788888899999999999999999999998887654 457899999876653 344444443332 1121
Q ss_pred CCccccccccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCC----CCCC
Q psy568 473 PNGVILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPT----DPGR 548 (1614)
Q Consensus 473 ~~g~~~~p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~----~~g~ 548 (1614)
.+|.+..+ ....+|+|||--- +-....-|.+++..|.+-.- ++.. .-.||++|+|++.+- ..|+
T Consensus 399 ~~g~~~~A----~gGtlFldeIgd~------p~~~Qs~LLrVl~e~~v~p~-g~~~-~~vdirvi~ath~dl~~lv~~g~ 466 (606)
T COG3284 399 YKGKLEQA----DGGTLFLDEIGDM------PLALQSRLLRVLQEGVVTPL-GGTR-IKVDIRVIAATHRDLAQLVEQGR 466 (606)
T ss_pred ccccceec----CCCccHHHHhhhc------hHHHHHHHHHHHhhCceecc-CCcc-eeEEEEEEeccCcCHHHHHHcCC
Confidence 22332222 2356888998531 11133345556666665543 3333 445999999998752 1122
Q ss_pred CCCcccccccccEEEecCCChhH-------HHHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHHHhhcCCCCCCccc
Q psy568 549 KPLSHRFLRHVPVIYVDYPGETS-------LKQIYGTFSRAMLRLIPPLRGYADALTNAMVELYLASQEKFTQDMQPHYV 621 (1614)
Q Consensus 549 ~~l~~r~~r~f~~i~i~~p~~~~-------l~~I~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~hY~ 621 (1614)
+.+.|.-|.+.+.+..|.-.+ +.+|+..... .-..+.+...+..+. -||.
T Consensus 467 --fredLyyrL~~~~i~lP~lr~R~d~~~~l~~~~~~~~~-------~~~~l~~~~~~~l~~--------------~~WP 523 (606)
T COG3284 467 --FREDLYYRLNAFVITLPPLRERSDRIPLLDRILKREND-------WRLQLDDDALARLLA--------------YRWP 523 (606)
T ss_pred --chHHHHHHhcCeeeccCchhcccccHHHHHHHHHHccC-------CCccCCHHHHHHHHh--------------CCCC
Confidence 334444455555555554322 3333222111 001122222222211 1677
Q ss_pred cChhhHHHHhhhhhcc
Q psy568 622 YSPREMTRWVRGICEA 637 (1614)
Q Consensus 622 F~lRdl~~v~~~i~~~ 637 (1614)
-|.|+|-.|+..+.-.
T Consensus 524 GNirel~~v~~~~~~l 539 (606)
T COG3284 524 GNIRELDNVIERLAAL 539 (606)
T ss_pred CcHHHHHHHHHHHHHc
Confidence 7999999999987643
No 286
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.19 E-value=0.0033 Score=77.31 Aligned_cols=123 Identities=18% Similarity=0.197 Sum_probs=70.9
Q ss_pred EEEeecCCCChHHHHHHHHHHcCCe--------------------------------EEEEEecCCCChhcHHHHHHHHH
Q psy568 760 LLLIGVSGAGKTTLSRFVAFMNGLS--------------------------------VFQIRAHNKYTGADFDEDLRTVL 807 (1614)
Q Consensus 760 ~LLvG~~GsGKtsl~rlaA~~~~~~--------------------------------~~~i~~~~~~~~~df~~~lk~~l 807 (1614)
+||.||+|+||||+++.+|....++ +..++-....+ .++++.+.
T Consensus 41 ~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~----id~Ir~l~ 116 (397)
T PRK14955 41 YIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFDAGTSLNISEFDAASNNS----VDDIRLLR 116 (397)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHhcCCCCCeEeecccccCC----HHHHHHHH
Confidence 8899999999999999999776552 22222111122 34455444
Q ss_pred HHh---ccCCCcEEEEEcCCcccccchHHHHHHhhcc--CCCCCCCChhhHHHHHHHhHHHHHHcCCCCCCHHHHHHHHH
Q psy568 808 RRS---GCKNEKIAFLLDESNVLESGFLERMNTLLAN--GEIPGLFEGDEYTTLMTQCKEGAQREGLMLDSNEELYKWFT 882 (1614)
Q Consensus 808 ~~a---g~~~~~~v~ll~d~~i~~~~~le~in~lL~~--G~v~~Lf~~eE~~~i~~~~~~~~~~~~~~~~s~~~l~~~f~ 882 (1614)
... ...++..++++++.+.....-.+.+-..|.. +...=+|..++...+...++..+..-.....+.+++.+|..
T Consensus 117 ~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~ 196 (397)
T PRK14955 117 ENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLEEIQQQLQ 196 (397)
T ss_pred HHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhHHHHHHHHHHhhcCCCCHHHHHHHHH
Confidence 433 5556677888888766554333333333333 22223455567777776666555443333345666666666
Q ss_pred HHHh
Q psy568 883 QQVM 886 (1614)
Q Consensus 883 ~rv~ 886 (1614)
+.++
T Consensus 197 ~~~~ 200 (397)
T PRK14955 197 GICE 200 (397)
T ss_pred HHHH
Confidence 5554
No 287
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.19 E-value=0.002 Score=76.44 Aligned_cols=128 Identities=14% Similarity=0.157 Sum_probs=79.0
Q ss_pred CCEEEecCCCCchHHHHHHHHhcCCCC-----------------------ceEEEEc---ccCCCHHHHHhHhhccccee
Q psy568 417 KPLVLCGPPGSGKTMTLLSALRALPDM-----------------------EVVSLNF---SSATTPELLLKTFDHYCEYR 470 (1614)
Q Consensus 417 ~~vLL~Gp~GtGKT~lv~~~~~~l~~~-----------------------~~~~i~~---s~~t~~~~l~~~~~~~~~~~ 470 (1614)
+..|++||+|+|||+++..+++.+... .+..+.- +.....+++....+ .+
T Consensus 23 ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~-~~--- 98 (328)
T PRK05707 23 HAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELVS-FV--- 98 (328)
T ss_pred eeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHH-HH---
Confidence 568999999999999999998865311 1122211 12234455544332 11
Q ss_pred ecCCccccccccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCC
Q psy568 471 KTPNGVILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKP 550 (1614)
Q Consensus 471 ~~~~g~~~~p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~ 550 (1614)
...|.. |++-|++||+.+.-..+ ....+|+ .++. +. +++.||.+++.+. .
T Consensus 99 ------~~~~~~-~~~kv~iI~~a~~m~~~-----aaNaLLK-~LEE-----Pp-------~~~~fiL~t~~~~-----~ 148 (328)
T PRK05707 99 ------VQTAQL-GGRKVVLIEPAEAMNRN-----AANALLK-SLEE-----PS-------GDTVLLLISHQPS-----R 148 (328)
T ss_pred ------hhcccc-CCCeEEEECChhhCCHH-----HHHHHHH-HHhC-----CC-------CCeEEEEEECChh-----h
Confidence 123332 34445567999873332 3444555 4443 11 2466677776554 5
Q ss_pred CcccccccccEEEecCCChhHHHHHHHH
Q psy568 551 LSHRFLRHVPVIYVDYPGETSLKQIYGT 578 (1614)
Q Consensus 551 l~~r~~r~f~~i~i~~p~~~~l~~I~~~ 578 (1614)
+.+-+.+|+..+.++.|+.+++...+..
T Consensus 149 ll~TI~SRc~~~~~~~~~~~~~~~~L~~ 176 (328)
T PRK05707 149 LLPTIKSRCQQQACPLPSNEESLQWLQQ 176 (328)
T ss_pred CcHHHHhhceeeeCCCcCHHHHHHHHHH
Confidence 8999999999999999999988777543
No 288
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.18 E-value=0.00095 Score=82.09 Aligned_cols=141 Identities=18% Similarity=0.220 Sum_probs=90.5
Q ss_pred HHHHHHHhcC---CCEEEecCCCCchHHHHHHHHhcCCCC------ceE------EEE-----------cccCCCHHHHH
Q psy568 407 SLLYTWLAEH---KPLVLCGPPGSGKTMTLLSALRALPDM------EVV------SLN-----------FSSATTPELLL 460 (1614)
Q Consensus 407 ~ll~~~l~~~---~~vLL~Gp~GtGKT~lv~~~~~~l~~~------~~~------~i~-----------~s~~t~~~~l~ 460 (1614)
..|..++..+ +.-|+.||-|||||++++-+++.+... ++. .++ --+.+..+++.
T Consensus 26 ~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~g~~~DviEiDaASn~gVddiR 105 (515)
T COG2812 26 KTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINEGSLIDVIEIDAASNTGVDDIR 105 (515)
T ss_pred HHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhhcCCcccchhhhhhhccChHHHH
Confidence 3455556554 567999999999999998888766211 111 111 11222334444
Q ss_pred hHhhcccceeecCCccccccccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEee
Q psy568 461 KTFDHYCEYRKTPNGVILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGAC 540 (1614)
Q Consensus 461 ~~~~~~~~~~~~~~g~~~~p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~ 540 (1614)
...+ .+.+.|. .|+.=|+.|||+||.+... -..+|..+=+ +.+.+.||-|+
T Consensus 106 ~i~e----------~v~y~P~-~~ryKVyiIDEvHMLS~~a-----fNALLKTLEE-------------PP~hV~FIlAT 156 (515)
T COG2812 106 EIIE----------KVNYAPS-EGRYKVYIIDEVHMLSKQA-----FNALLKTLEE-------------PPSHVKFILAT 156 (515)
T ss_pred HHHH----------HhccCCc-cccceEEEEecHHhhhHHH-----HHHHhccccc-------------CccCeEEEEec
Confidence 3333 4557776 4777788899999954442 2344444422 12356666666
Q ss_pred cCCCCCCCCCCcccccccccEEEecCCChhHHHHHHHHHHH
Q psy568 541 NPPTDPGRKPLSHRFLRHVPVIYVDYPGETSLKQIYGTFSR 581 (1614)
Q Consensus 541 n~~~~~g~~~l~~r~~r~f~~i~i~~p~~~~l~~I~~~~~~ 581 (1614)
..+. .+|.-.++|+..+.+...+.+++..-+..++.
T Consensus 157 Te~~-----Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~~ 192 (515)
T COG2812 157 TEPQ-----KIPNTILSRCQRFDFKRLDLEEIAKHLAAILD 192 (515)
T ss_pred CCcC-----cCchhhhhccccccccCCCHHHHHHHHHHHHH
Confidence 5543 69999999999999999999988887776654
No 289
>KOG0933|consensus
Probab=97.18 E-value=1.5 Score=56.69 Aligned_cols=56 Identities=16% Similarity=0.465 Sum_probs=38.2
Q ss_pred EEeecCCCChHHHHHHHHHHcCCeEEEEEecCCCChhcHHH-HHHHHHH---HhccCCCcEEEEEcCCcc
Q psy568 761 LLIGVSGAGKTTLSRFVAFMNGLSVFQIRAHNKYTGADFDE-DLRTVLR---RSGCKNEKIAFLLDESNV 826 (1614)
Q Consensus 761 LLvG~~GsGKtsl~rlaA~~~~~~~~~i~~~~~~~~~df~~-~lk~~l~---~ag~~~~~~v~ll~d~~i 826 (1614)
.+.|-.||||+-+.--.||.+|..- ++..+. .|+.++- .||+..-.+.+.||.++-
T Consensus 29 AITGlNGSGKSNILDsICFvLGI~n----------l~~VRA~nlqeLIyk~GQAGiTkAsVsVvFdNtdk 88 (1174)
T KOG0933|consen 29 AITGLNGSGKSNILDSICFVLGITN----------LSQVRASNLQELIYKNGQAGITKASVSVVFDNTDK 88 (1174)
T ss_pred hhhcCCCCCchHHHHHHHHHHccch----------HHHHHHHHHHHHHHhcCcccceeEEEEEEecCCCc
Confidence 3789999999999999999999642 222222 2444443 356666677788877643
No 290
>KOG0976|consensus
Probab=97.17 E-value=1.2 Score=55.46 Aligned_cols=11 Identities=27% Similarity=0.199 Sum_probs=5.4
Q ss_pred CHHHHHHHhch
Q psy568 1162 DWKAIRAVVMR 1172 (1614)
Q Consensus 1162 ~W~~~k~~l~~ 1172 (1614)
.|+.-...|.+
T Consensus 274 qlk~kns~L~~ 284 (1265)
T KOG0976|consen 274 QLKAKNSVLGD 284 (1265)
T ss_pred HHHHHHHHHhh
Confidence 35544445554
No 291
>KOG2227|consensus
Probab=97.16 E-value=0.0031 Score=74.47 Aligned_cols=148 Identities=21% Similarity=0.215 Sum_probs=88.4
Q ss_pred hcCCCEEEecCCCCchHHHHHHHHhcCCC----CceEEEEcccCCCHHHHHhHhhcccc--eeecCCc-----ccccccc
Q psy568 414 AEHKPLVLCGPPGSGKTMTLLSALRALPD----MEVVSLNFSSATTPELLLKTFDHYCE--YRKTPNG-----VILSPIQ 482 (1614)
Q Consensus 414 ~~~~~vLL~Gp~GtGKT~lv~~~~~~l~~----~~~~~i~~s~~t~~~~l~~~~~~~~~--~~~~~~g-----~~~~p~~ 482 (1614)
+.+..+.+.|.||+|||.+...++..... ...+.+||.+-+++..+...+-+.+. ......| .+..+..
T Consensus 173 ~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~ 252 (529)
T KOG2227|consen 173 NTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTK 252 (529)
T ss_pred ccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHh
Confidence 34678999999999999999888876532 23578999988888777666544431 1111111 0111211
Q ss_pred CC-ceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCCCccccccccc-
Q psy568 483 LG-KWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLRHVP- 560 (1614)
Q Consensus 483 ~g-k~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r~f~- 560 (1614)
.. ..+|+++||++-.... +.+-+|.-....+.....+.+||-.|.- ++..||+-+.+
T Consensus 253 q~k~~~llVlDEmD~L~tr---------------~~~vLy~lFewp~lp~sr~iLiGiANsl------DlTdR~LprL~~ 311 (529)
T KOG2227|consen 253 QSKFMLLLVLDEMDHLITR---------------SQTVLYTLFEWPKLPNSRIILIGIANSL------DLTDRFLPRLNL 311 (529)
T ss_pred cccceEEEEechhhHHhhc---------------ccceeeeehhcccCCcceeeeeeehhhh------hHHHHHhhhhhh
Confidence 12 3678889999862110 1112343222222223456677777654 35555553322
Q ss_pred -------EEEecCCChhHHHHHHHHHHHh
Q psy568 561 -------VIYVDYPGETSLKQIYGTFSRA 582 (1614)
Q Consensus 561 -------~i~i~~p~~~~l~~I~~~~~~~ 582 (1614)
++.+++.+.+++..|++.-+..
T Consensus 312 ~~~~~P~~l~F~PYTk~qI~~Il~~rl~~ 340 (529)
T KOG2227|consen 312 DLTIKPKLLVFPPYTKDQIVEILQQRLSE 340 (529)
T ss_pred ccCCCCceeeecCCCHHHHHHHHHHHHhc
Confidence 5888999999999998775543
No 292
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.15 E-value=0.0018 Score=85.47 Aligned_cols=145 Identities=20% Similarity=0.311 Sum_probs=85.3
Q ss_pred ccEEEeecCCCChHHHHHHHHHHcCCeEEEEEecCCCChhcHHH-----------HHHHHHHHhccCCCcEEEEEcCCcc
Q psy568 758 GHLLLIGVSGAGKTTLSRFVAFMNGLSVFQIRAHNKYTGADFDE-----------DLRTVLRRSGCKNEKIAFLLDESNV 826 (1614)
Q Consensus 758 gh~LLvG~~GsGKtsl~rlaA~~~~~~~~~i~~~~~~~~~df~~-----------~lk~~l~~ag~~~~~~v~ll~d~~i 826 (1614)
..++|+||+|+|||++++.+|...+.+++.+.++..-+..+.++ .+...+.++|..+ | ++++|+-+-
T Consensus 350 ~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~~~~~g~~~G~~~~~l~~~~~~~-~-villDEidk 427 (784)
T PRK10787 350 PILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKN-P-LFLLDEIDK 427 (784)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccchhccCCCCCcHHHHHHHhcCCCC-C-EEEEEChhh
Confidence 35889999999999999999999999999888765444333322 2334455665433 3 677887543
Q ss_pred cccchHHHHHHhhccCCCCCCCChhhHHHHHHHhHHHHHHcCCCCCCHHHHHHHHHHH-H-hhcceEEEEECCCChhhHH
Q psy568 827 LESGFLERMNTLLANGEIPGLFEGDEYTTLMTQCKEGAQREGLMLDSNEELYKWFTQQ-V-MKNLHVVFTMNPSSEGLKD 904 (1614)
Q Consensus 827 ~~~~~le~in~lL~~G~v~~Lf~~eE~~~i~~~~~~~~~~~~~~~~s~~~l~~~f~~r-v-~~nlhivl~~sp~~~~~r~ 904 (1614)
....+ .++=.+.+++-+-+. ++. ...+.|.+- + -+++.++. ..+ .+
T Consensus 428 ~~~~~-----------------~g~~~~aLlevld~~--~~~-------~~~d~~~~~~~dls~v~~i~-TaN---~~-- 475 (784)
T PRK10787 428 MSSDM-----------------RGDPASALLEVLDPE--QNV-------AFSDHYLEVDYDLSDVMFVA-TSN---SM-- 475 (784)
T ss_pred ccccc-----------------CCCHHHHHHHHhccc--cEE-------EEecccccccccCCceEEEE-cCC---CC--
Confidence 32211 011111222211110 000 000111100 0 13454433 222 22
Q ss_pred HhhhCccccccceecccCCCcHHHHHHHHHHhhc
Q psy568 905 RAATSPALFNRCVLNWFGDWSDTALYQVAKEFTS 938 (1614)
Q Consensus 905 ~~~~~PaL~~~~~i~wf~~W~~eaL~~va~~~l~ 938 (1614)
...|+|++||.+.-|.+.+.+.+..+|.+++.
T Consensus 476 --~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L~ 507 (784)
T PRK10787 476 --NIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLL 507 (784)
T ss_pred --CCCHHHhcceeeeecCCCCHHHHHHHHHHhhh
Confidence 36899999999999999999999999999873
No 293
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.14 E-value=0.0035 Score=79.18 Aligned_cols=72 Identities=24% Similarity=0.325 Sum_probs=47.9
Q ss_pred cEEEeecCCCChHHHHHHHHHHcCCe------------------------EEEEEecCCCChhcHHHHHHHHHHHhccCC
Q psy568 759 HLLLIGVSGAGKTTLSRFVAFMNGLS------------------------VFQIRAHNKYTGADFDEDLRTVLRRSGCKN 814 (1614)
Q Consensus 759 h~LLvG~~GsGKtsl~rlaA~~~~~~------------------------~~~i~~~~~~~~~df~~~lk~~l~~ag~~~ 814 (1614)
++||.|++|+|||++++++|....+. +++++-....++.+.++ |+..+......+
T Consensus 40 a~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv~eId~a~~~~Id~iR~-L~~~~~~~p~~g 118 (624)
T PRK14959 40 AYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDVVEIDGASNRGIDDAKR-LKEAIGYAPMEG 118 (624)
T ss_pred eEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCceEEEecccccCHHHHHH-HHHHHHhhhhcC
Confidence 46789999999999999999877653 45554333334444333 444444444566
Q ss_pred CcEEEEEcCCcccccch
Q psy568 815 EKIAFLLDESNVLESGF 831 (1614)
Q Consensus 815 ~~~v~ll~d~~i~~~~~ 831 (1614)
+..++++|+.+.....-
T Consensus 119 ~~kVIIIDEad~Lt~~a 135 (624)
T PRK14959 119 RYKVFIIDEAHMLTREA 135 (624)
T ss_pred CceEEEEEChHhCCHHH
Confidence 77889999887665443
No 294
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=97.13 E-value=0.0014 Score=77.95 Aligned_cols=80 Identities=26% Similarity=0.313 Sum_probs=54.8
Q ss_pred CccEEEeecCCCChHHHHHHHHHHcCCeEEEEEecCCCChhcHHHHHHHHHHHhccCCCcEEEEEcCCcccccchHHHHH
Q psy568 757 QGHLLLIGVSGAGKTTLSRFVAFMNGLSVFQIRAHNKYTGADFDEDLRTVLRRSGCKNEKIAFLLDESNVLESGFLERMN 836 (1614)
Q Consensus 757 ~gh~LLvG~~GsGKtsl~rlaA~~~~~~~~~i~~~~~~~~~df~~~lk~~l~~ag~~~~~~v~ll~d~~i~~~~~le~in 836 (1614)
..|++|.||+|+|||++++.+|...+.++..+......... ++...+... +.+.++++||-+...+...|.+.
T Consensus 30 ~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~~~----~l~~~l~~~---~~~~vl~iDEi~~l~~~~~e~l~ 102 (305)
T TIGR00635 30 LDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEKPG----DLAAILTNL---EEGDVLFIDEIHRLSPAVEELLY 102 (305)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcCch----hHHHHHHhc---ccCCEEEEehHhhhCHHHHHHhh
Confidence 45799999999999999999999998887665433222233 333333332 34568889998777766666666
Q ss_pred HhhccCC
Q psy568 837 TLLANGE 843 (1614)
Q Consensus 837 ~lL~~G~ 843 (1614)
+++..+.
T Consensus 103 ~~~~~~~ 109 (305)
T TIGR00635 103 PAMEDFR 109 (305)
T ss_pred HHHhhhh
Confidence 6665543
No 295
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.13 E-value=0.0031 Score=78.82 Aligned_cols=72 Identities=25% Similarity=0.411 Sum_probs=47.0
Q ss_pred cc-EEEeecCCCChHHHHHHHHHHcCC------------------------eEEEEEecCCCChhcHHHHHHHHHHHhcc
Q psy568 758 GH-LLLIGVSGAGKTTLSRFVAFMNGL------------------------SVFQIRAHNKYTGADFDEDLRTVLRRSGC 812 (1614)
Q Consensus 758 gh-~LLvG~~GsGKtsl~rlaA~~~~~------------------------~~~~i~~~~~~~~~df~~~lk~~l~~ag~ 812 (1614)
+| .||.||+|+|||+++++.|...++ ++++++.....+..+.+ .++........
T Consensus 38 ~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~eidaas~~gvd~ir-~I~~~~~~~P~ 116 (486)
T PRK14953 38 SHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEIDAASNRGIDDIR-ALRDAVSYTPI 116 (486)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEEeCccCCCHHHHH-HHHHHHHhCcc
Confidence 45 468999999999999999887553 23444433333444333 34444555556
Q ss_pred CCCcEEEEEcCCcccccc
Q psy568 813 KNEKIAFLLDESNVLESG 830 (1614)
Q Consensus 813 ~~~~~v~ll~d~~i~~~~ 830 (1614)
.++.-++++|+.+.....
T Consensus 117 ~~~~KVvIIDEad~Lt~~ 134 (486)
T PRK14953 117 KGKYKVYIIDEAHMLTKE 134 (486)
T ss_pred cCCeeEEEEEChhhcCHH
Confidence 677789999987655443
No 296
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=97.12 E-value=0.00033 Score=74.91 Aligned_cols=91 Identities=26% Similarity=0.397 Sum_probs=62.1
Q ss_pred cCCccEEEeecCCCChHHHHHHHHHHcCC----eEEEEEecCCCChhcHHHHHHHHHHHhcc---CCCcEEEEEcCCccc
Q psy568 755 QPQGHLLLIGVSGAGKTTLSRFVAFMNGL----SVFQIRAHNKYTGADFDEDLRTVLRRSGC---KNEKIAFLLDESNVL 827 (1614)
Q Consensus 755 ~p~gh~LLvG~~GsGKtsl~rlaA~~~~~----~~~~i~~~~~~~~~df~~~lk~~l~~ag~---~~~~~v~ll~d~~i~ 827 (1614)
.|.+++||+||+|+|||.+++.+|.+... ++..++++......+....+...+..+.. ..+.-|+++|+-+-+
T Consensus 1 ~p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidKa 80 (171)
T PF07724_consen 1 RPKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGDDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDKA 80 (171)
T ss_dssp S-SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHHHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGGC
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccchHHhhhhhhhhcccceeeccchhhhhhHHHhhc
Confidence 48899999999999999999999998885 88888877544411111112222222210 011227888999989
Q ss_pred cc-----------chHHHHHHhhccCCCC
Q psy568 828 ES-----------GFLERMNTLLANGEIP 845 (1614)
Q Consensus 828 ~~-----------~~le~in~lL~~G~v~ 845 (1614)
++ .+...+-.+|..|.+.
T Consensus 81 ~~~~~~~~~v~~~~V~~~LL~~le~g~~~ 109 (171)
T PF07724_consen 81 HPSNSGGADVSGEGVQNSLLQLLEGGTLT 109 (171)
T ss_dssp SHTTTTCSHHHHHHHHHHHHHHHHHSEEE
T ss_pred cccccccchhhHHHHHHHHHHHhccccee
Confidence 99 8888888888888775
No 297
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.11 E-value=0.0035 Score=78.72 Aligned_cols=122 Identities=16% Similarity=0.242 Sum_probs=65.5
Q ss_pred EEEeecCCCChHHHHHHHHHHcCC------------------------eEEEEEecCCCChhcHHHHHHHHHHHhccCCC
Q psy568 760 LLLIGVSGAGKTTLSRFVAFMNGL------------------------SVFQIRAHNKYTGADFDEDLRTVLRRSGCKNE 815 (1614)
Q Consensus 760 ~LLvG~~GsGKtsl~rlaA~~~~~------------------------~~~~i~~~~~~~~~df~~~lk~~l~~ag~~~~ 815 (1614)
+|+.||+|+||||+++.+|....+ ++++++.....+..+.++ +...+......++
T Consensus 41 ~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h~DiieIdaas~igVd~IRe-Ii~~~~~~P~~~~ 119 (605)
T PRK05896 41 YIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVDIVELDAASNNGVDEIRN-IIDNINYLPTTFK 119 (605)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCCCceEEeccccccCHHHHHH-HHHHHHhchhhCC
Confidence 779999999999999999876543 344444333344444443 2222333334455
Q ss_pred cEEEEEcCCcccccchHHHHHHhhcc-----CCCCCCCChhhHHHHHHHhHHHHHHcCCCCCCHHHHHHHHHHHH
Q psy568 816 KIAFLLDESNVLESGFLERMNTLLAN-----GEIPGLFEGDEYTTLMTQCKEGAQREGLMLDSNEELYKWFTQQV 885 (1614)
Q Consensus 816 ~~v~ll~d~~i~~~~~le~in~lL~~-----G~v~~Lf~~eE~~~i~~~~~~~~~~~~~~~~s~~~l~~~f~~rv 885 (1614)
.-++++++.+....+ ..|.||.. +.+--+|...+...+...++..++.-.....+..++..++.+.+
T Consensus 120 ~KVIIIDEad~Lt~~---A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il 191 (605)
T PRK05896 120 YKVYIIDEAHMLSTS---AWNALLKTLEEPPKHVVFIFATTEFQKIPLTIISRCQRYNFKKLNNSELQELLKSIA 191 (605)
T ss_pred cEEEEEechHhCCHH---HHHHHHHHHHhCCCcEEEEEECCChHhhhHHHHhhhhhcccCCCCHHHHHHHHHHHH
Confidence 567888887665543 23444432 22223344455555555544444433332334444444444433
No 298
>KOG0995|consensus
Probab=97.10 E-value=1.3 Score=54.30 Aligned_cols=115 Identities=16% Similarity=0.127 Sum_probs=60.0
Q ss_pred hHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q psy568 1219 GPMVKWAIAQISYADMLKKVEPLRLELKSLEVQASENKAKGEETKDLITQLEKSIASYKDEYAQLIAQATAIKTDLDNVQ 1298 (1614)
Q Consensus 1219 ~~L~~Wv~Ai~~y~~v~~~v~P~~~~l~~~~~~~~~~~~~l~~~~~~l~~~e~~l~~l~~~~~~~~~~~~~l~~~l~~~~ 1298 (1614)
.+||.|+..+ ..++...+.++..++...++.....++..+.+..++.++..+.+.|....++.+.....++..-
T Consensus 421 ~~l~el~~ei------~~~~~~~~~~~~tLq~~~~~~~~~i~E~~~~l~~~~~el~~~~~~~~~~k~e~eee~~k~~~E~ 494 (581)
T KOG0995|consen 421 PLLKELLDEI------SEELHEAENELETLQEHFSNKASTIEEKIQILGEIELELKKAESKYELKKEEAEEEWKKCRKEI 494 (581)
T ss_pred HHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666533 3344445555666666666666666677777777777777777777666655555543332221
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHH
Q psy568 1299 AKFYEYAQLIAQATAIKTDLDNVQAKVERSMALLKSLGIERERWEATSET 1348 (1614)
Q Consensus 1299 ~~~~~~~~~~~~~~~l~~~~~~~~~rl~~a~~l~~~L~~e~~rW~~~~~~ 1348 (1614)
.+++ .+. ...--.....+.-|..++++...|..|-..+...
T Consensus 495 e~le------~~l---~~l~l~~~~~m~~a~~~v~s~e~el~~~~~~~~e 535 (581)
T KOG0995|consen 495 EKLE------EEL---LNLKLVLNTSMKEAEELVKSIELELDRMVATGEE 535 (581)
T ss_pred HHHH------HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 111 1111123345555566666665555554444433
No 299
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.08 E-value=0.0034 Score=79.52 Aligned_cols=122 Identities=16% Similarity=0.248 Sum_probs=73.1
Q ss_pred ccE-EEeecCCCChHHHHHHHHHHcCCe------------------------EEEEEecCCCChhcHHHHHHHHHHHh--
Q psy568 758 GHL-LLIGVSGAGKTTLSRFVAFMNGLS------------------------VFQIRAHNKYTGADFDEDLRTVLRRS-- 810 (1614)
Q Consensus 758 gh~-LLvG~~GsGKtsl~rlaA~~~~~~------------------------~~~i~~~~~~~~~df~~~lk~~l~~a-- 810 (1614)
.|+ ||.||+|+||||+++.+|...+++ +++++.....+. ++++.++..+
T Consensus 38 ~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei~~~~~~~v----d~ir~l~~~~~~ 113 (527)
T PRK14969 38 HHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEVDAASNTQV----DAMRELLDNAQY 113 (527)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEeeccccCCH----HHHHHHHHHHhh
Confidence 465 899999999999999999876552 334433323333 4445444433
Q ss_pred -ccCCCcEEEEEcCCcccccchHHHHHHhhcc-----CCCCCCCChhhHHHHHHHhHHHHHHcCCCCCCHHHHHHHHHHH
Q psy568 811 -GCKNEKIAFLLDESNVLESGFLERMNTLLAN-----GEIPGLFEGDEYTTLMTQCKEGAQREGLMLDSNEELYKWFTQQ 884 (1614)
Q Consensus 811 -g~~~~~~v~ll~d~~i~~~~~le~in~lL~~-----G~v~~Lf~~eE~~~i~~~~~~~~~~~~~~~~s~~~l~~~f~~r 884 (1614)
...++.-++++|+.+-...+ ..|.||.+ +.+.=+|...+...+...++..+..-.....+.+++.++..+.
T Consensus 114 ~p~~~~~kVvIIDEad~ls~~---a~naLLK~LEepp~~~~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~i 190 (527)
T PRK14969 114 APTRGRFKVYIIDEVHMLSKS---AFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHI 190 (527)
T ss_pred CcccCCceEEEEcCcccCCHH---HHHHHHHHHhCCCCCEEEEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 34566778999986655443 34444433 3444455555555555555555555444445667777766665
Q ss_pred Hh
Q psy568 885 VM 886 (1614)
Q Consensus 885 v~ 886 (1614)
+.
T Consensus 191 l~ 192 (527)
T PRK14969 191 LE 192 (527)
T ss_pred HH
Confidence 54
No 300
>KOG0994|consensus
Probab=97.08 E-value=0.61 Score=60.33 Aligned_cols=53 Identities=15% Similarity=0.172 Sum_probs=35.8
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy568 1235 LKKVEPLRLELKSLEVQASENKAKGEETKDLITQLEKSIASYKDEYAQLIAQA 1287 (1614)
Q Consensus 1235 ~~~v~P~~~~l~~~~~~~~~~~~~l~~~~~~l~~~e~~l~~l~~~~~~~~~~~ 1287 (1614)
...++-.++.|.+++++...+++.+....+.+.+++..+++||.++.+.-.++
T Consensus 1590 ~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~A 1642 (1758)
T KOG0994|consen 1590 DRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQNSAEA 1642 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 34455566677777777777777777777777777777777776665544433
No 301
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.07 E-value=0.0077 Score=72.48 Aligned_cols=85 Identities=13% Similarity=0.253 Sum_probs=57.8
Q ss_pred CceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCC-------CCCC---CCCcc
Q psy568 484 GKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPT-------DPGR---KPLSH 553 (1614)
Q Consensus 484 gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~-------~~g~---~~l~~ 553 (1614)
++++|+||||+++..++ -...+++.++.+++. +++.+|.++++.- ..|. .....
T Consensus 171 ~~~iViiIDdLDR~~~~--~i~~~l~~ik~~~~~--------------~~i~~Il~~D~~~l~~ai~~~~~~~~~~~~~~ 234 (325)
T PF07693_consen 171 KKRIVIIIDDLDRCSPE--EIVELLEAIKLLLDF--------------PNIIFILAFDPEILEKAIEKNYGEGFDEIDGR 234 (325)
T ss_pred CceEEEEEcchhcCCcH--HHHHHHHHHHHhcCC--------------CCeEEEEEecHHHHHHHHHhhcCcccccccHH
Confidence 46899999999997666 244456666666553 5677888887631 0111 23556
Q ss_pred ccccccc--EEEecCCChhHHHHHHHHHHHhhh
Q psy568 554 RFLRHVP--VIYVDYPGETSLKQIYGTFSRAML 584 (1614)
Q Consensus 554 r~~r~f~--~i~i~~p~~~~l~~I~~~~~~~~~ 584 (1614)
.++..|. .+.+|.|+..++...+...+....
T Consensus 235 ~yLeKiiq~~~~lP~~~~~~~~~~~~~~~~~~~ 267 (325)
T PF07693_consen 235 EYLEKIIQVPFSLPPPSPSDLERYLNELLESLE 267 (325)
T ss_pred HHHHhhcCeEEEeCCCCHHHHHHHHHHHHHHhh
Confidence 6776655 688999999999988887766554
No 302
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.05 E-value=0.0024 Score=81.31 Aligned_cols=143 Identities=19% Similarity=0.167 Sum_probs=76.2
Q ss_pred hhHHHHHHHHHHHHHHhccCCccE-EEeecCCCChHHHHHHHHHHcCC-----------------------------eEE
Q psy568 737 VLFDEVLDHVLRIDRIFRQPQGHL-LLIGVSGAGKTTLSRFVAFMNGL-----------------------------SVF 786 (1614)
Q Consensus 737 vlf~~~i~hi~ri~Ril~~p~gh~-LLvG~~GsGKtsl~rlaA~~~~~-----------------------------~~~ 786 (1614)
+..+.++..+.+..+-=+ -.|+ ||.|+.|+||||+++++|...+| +++
T Consensus 19 iGQe~vv~~L~~~l~~~r--l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~~g~h~D~~ 96 (618)
T PRK14951 19 VGQEHVVQALTNALTQQR--LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDIDSGRFVDYT 96 (618)
T ss_pred cCcHHHHHHHHHHHHcCC--CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHHcCCCCcee
Confidence 333444444444333222 2355 89999999999999999877654 244
Q ss_pred EEEecCCCChhcHHHHHHHHHHHhccCCCcEEEEEcCCcccccchHHHHHHhhccCCC-----CCCCChhhHHHHHHHhH
Q psy568 787 QIRAHNKYTGADFDEDLRTVLRRSGCKNEKIAFLLDESNVLESGFLERMNTLLANGEI-----PGLFEGDEYTTLMTQCK 861 (1614)
Q Consensus 787 ~i~~~~~~~~~df~~~lk~~l~~ag~~~~~~v~ll~d~~i~~~~~le~in~lL~~G~v-----~~Lf~~eE~~~i~~~~~ 861 (1614)
+++.....++.+.++-+..+ ......++.-++++|+.+..+..- .|.||.+-|- .-+|...+...+...++
T Consensus 97 eldaas~~~Vd~iReli~~~-~~~p~~g~~KV~IIDEvh~Ls~~a---~NaLLKtLEEPP~~~~fIL~Ttd~~kil~TIl 172 (618)
T PRK14951 97 ELDAASNRGVDEVQQLLEQA-VYKPVQGRFKVFMIDEVHMLTNTA---FNAMLKTLEEPPEYLKFVLATTDPQKVPVTVL 172 (618)
T ss_pred ecCcccccCHHHHHHHHHHH-HhCcccCCceEEEEEChhhCCHHH---HHHHHHhcccCCCCeEEEEEECCchhhhHHHH
Confidence 55444445555555444332 223345566788999987766543 4566654332 22344444444444344
Q ss_pred HHHHHcCCCCCCHHHHHHHHHHHH
Q psy568 862 EGAQREGLMLDSNEELYKWFTQQV 885 (1614)
Q Consensus 862 ~~~~~~~~~~~s~~~l~~~f~~rv 885 (1614)
..+..-.....+.+++.+++.+.+
T Consensus 173 SRc~~~~f~~Ls~eei~~~L~~i~ 196 (618)
T PRK14951 173 SRCLQFNLRPMAPETVLEHLTQVL 196 (618)
T ss_pred HhceeeecCCCCHHHHHHHHHHHH
Confidence 333322222234444544444333
No 303
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=97.04 E-value=0.0042 Score=78.78 Aligned_cols=123 Identities=17% Similarity=0.223 Sum_probs=73.1
Q ss_pred EEEeecCCCChHHHHHHHHHHcCCe------------------------EEEEEecCCCChhcHHHHHHHHHHHh---cc
Q psy568 760 LLLIGVSGAGKTTLSRFVAFMNGLS------------------------VFQIRAHNKYTGADFDEDLRTVLRRS---GC 812 (1614)
Q Consensus 760 ~LLvG~~GsGKtsl~rlaA~~~~~~------------------------~~~i~~~~~~~~~df~~~lk~~l~~a---g~ 812 (1614)
+||.|++|+|||++++.+|...+++ +++++.....+. ++++.++..+ -.
T Consensus 41 ~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~DvlEidaAs~~gV----d~IRelle~a~~~P~ 116 (709)
T PRK08691 41 YLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLLEIDAASNTGI----DNIREVLENAQYAPT 116 (709)
T ss_pred EEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceEEEeccccCCH----HHHHHHHHHHHhhhh
Confidence 6999999999999999998865442 334443333443 3455554432 23
Q ss_pred CCCcEEEEEcCCcccccchHHHHHHhhc--cCCCCCCCChhhHHHHHHHhHHHHHHcCCCCCCHHHHHHHHHHHHh
Q psy568 813 KNEKIAFLLDESNVLESGFLERMNTLLA--NGEIPGLFEGDEYTTLMTQCKEGAQREGLMLDSNEELYKWFTQQVM 886 (1614)
Q Consensus 813 ~~~~~v~ll~d~~i~~~~~le~in~lL~--~G~v~~Lf~~eE~~~i~~~~~~~~~~~~~~~~s~~~l~~~f~~rv~ 886 (1614)
.++.-++++|+.+..+..-.+.+-..|. .+.+.-+|...+...+...++..+..-.+...+.+++..+..+.+.
T Consensus 117 ~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~ 192 (709)
T PRK08691 117 AGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLD 192 (709)
T ss_pred hCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHH
Confidence 4566788899976665543333333443 2555556666566666666655554443333456666666655444
No 304
>KOG0731|consensus
Probab=97.04 E-value=0.0012 Score=83.64 Aligned_cols=94 Identities=26% Similarity=0.364 Sum_probs=64.9
Q ss_pred hccCCccEEEeecCCCChHHHHHHHHHHcCCeEEEEEecCCCChhcHHHHHH--------HHHHHhccCCCcEEEEEcCC
Q psy568 753 FRQPQGHLLLIGVSGAGKTTLSRFVAFMNGLSVFQIRAHNKYTGADFDEDLR--------TVLRRSGCKNEKIAFLLDES 824 (1614)
Q Consensus 753 l~~p~gh~LLvG~~GsGKtsl~rlaA~~~~~~~~~i~~~~~~~~~df~~~lk--------~~l~~ag~~~~~~v~ll~d~ 824 (1614)
.+.|+| +||+||||||||.|+|..|--+|.+++.+ +.+||.+-+. .++..| ..+.|+.+++|+.
T Consensus 341 AKiPkG-vLL~GPPGTGKTLLAKAiAGEAgVPF~sv------SGSEFvE~~~g~~asrvr~lf~~a-r~~aP~iifidei 412 (774)
T KOG0731|consen 341 AKIPKG-VLLVGPPGTGKTLLAKAIAGEAGVPFFSV------SGSEFVEMFVGVGASRVRDLFPLA-RKNAPSIIFIDEI 412 (774)
T ss_pred CcCcCc-eEEECCCCCcHHHHHHHHhcccCCceeee------chHHHHHHhcccchHHHHHHHHHh-hccCCeEEEeccc
Confidence 357999 99999999999999999999999999988 4577877543 334444 5778888888875
Q ss_pred cccccchHHHHHHhhccCCCCCCCChhhHHHHHHHhHHHH
Q psy568 825 NVLESGFLERMNTLLANGEIPGLFEGDEYTTLMTQCKEGA 864 (1614)
Q Consensus 825 ~i~~~~~le~in~lL~~G~v~~Lf~~eE~~~i~~~~~~~~ 864 (1614)
+.+.-. ..|-. ..-..+|.+.-++++-...
T Consensus 413 da~~~~---------r~G~~-~~~~~~e~e~tlnQll~em 442 (774)
T KOG0731|consen 413 DAVGRK---------RGGKG-TGGGQDEREQTLNQLLVEM 442 (774)
T ss_pred cccccc---------ccccc-cCCCChHHHHHHHHHHHHh
Confidence 332110 00111 1133577777777766554
No 305
>KOG0482|consensus
Probab=97.02 E-value=0.0015 Score=76.92 Aligned_cols=152 Identities=18% Similarity=0.217 Sum_probs=85.7
Q ss_pred CCCEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccC--CCHHHHHhHhhcccceeecCCccccccccCCceEEEEecc
Q psy568 416 HKPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSA--TTPELLLKTFDHYCEYRKTPNGVILSPIQLGKWLVLFCDE 493 (1614)
Q Consensus 416 ~~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~--t~~~~l~~~~~~~~~~~~~~~g~~~~p~~~gk~~vlfiDd 493 (1614)
..+|+|.|.||+.||.+++.+.+--+...+.+=..|+. .++.-+..-+.+.+.-- .|.++-+ .| .|..|||
T Consensus 375 dINicLmGDPGVAKSQLLkyi~rlapRgvYTTGrGSSGVGLTAAVmkDpvTgEM~LE---GGALVLA--D~--GICCIDE 447 (721)
T KOG0482|consen 375 DINICLMGDPGVAKSQLLKYISRLAPRGVYTTGRGSSGVGLTAAVMKDPVTGEMVLE---GGALVLA--DG--GICCIDE 447 (721)
T ss_pred ceeEEecCCCchhHHHHHHHHHhcCcccceecCCCCCccccchhhhcCCCCCeeEec---cceEEEc--cC--ceEeehh
Confidence 46899999999999999988876543333322222222 23333333333333222 2555544 23 3445599
Q ss_pred CCC-CCccccCcccHHHHHHHHHHcCceeeCCCCceEe-ecCeEEEEeecCCCCCCC----------CCCcccccccccE
Q psy568 494 INL-PDMDKYATQRVISFLRQLIEQRGFYRPADKQWVS-LERIQCVGACNPPTDPGR----------KPLSHRFLRHVPV 561 (1614)
Q Consensus 494 in~-p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~-~~~~~~iaa~n~~~~~g~----------~~l~~r~~r~f~~ 561 (1614)
++. ...|. ..+..+|+...+-..+-+-... -....++||.||.. || -.||.+|++||-+
T Consensus 448 fDKM~e~DR-------tAIHEVMEQQTISIaKAGI~TtLNAR~sILaAANPay--GRYnprrs~e~NI~LPaALLSRFDl 518 (721)
T KOG0482|consen 448 FDKMDESDR-------TAIHEVMEQQTISIAKAGINTTLNARTSILAAANPAY--GRYNPRRSPEQNINLPAALLSRFDL 518 (721)
T ss_pred hhhhhhhhh-------HHHHHHHHhhhhhhhhhccccchhhhHHhhhhcCccc--cccCcccChhHhcCCcHHHHHhhhh
Confidence 995 33332 1233344444433322222222 24678899999986 32 3579999999997
Q ss_pred EE--ecCCChhHHHHHHHHHHHhh
Q psy568 562 IY--VDYPGETSLKQIYGTFSRAM 583 (1614)
Q Consensus 562 i~--i~~p~~~~l~~I~~~~~~~~ 583 (1614)
+. .+.|+.+.=...-+.+.--+
T Consensus 519 l~Li~D~pdrd~D~~LA~HiTyVH 542 (721)
T KOG0482|consen 519 LWLIQDRPDRDNDLRLAQHITYVH 542 (721)
T ss_pred hhhhccCCcccchHHHHHHhHhhh
Confidence 64 47788776555555544333
No 306
>KOG0933|consensus
Probab=97.01 E-value=2.1 Score=55.47 Aligned_cols=33 Identities=18% Similarity=0.174 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q psy568 1225 AIAQISYADMLKKVEPLRLELKSLEVQASENKA 1257 (1614)
Q Consensus 1225 v~Ai~~y~~v~~~v~P~~~~l~~~~~~~~~~~~ 1257 (1614)
+.++-+|..+..+++-.+.+|+.++++++..+.
T Consensus 673 L~~l~~l~~~~~~~~~~q~el~~le~eL~~le~ 705 (1174)
T KOG0933|consen 673 LRQLQKLKQAQKELRAIQKELEALERELKSLEA 705 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667788888777778888888877766543
No 307
>KOG2028|consensus
Probab=97.00 E-value=0.0032 Score=71.37 Aligned_cols=132 Identities=17% Similarity=0.251 Sum_probs=76.6
Q ss_pred cEEEeecCCCChHHHHHHHHHHcCCe-EEEEEecCCC-ChhcHHHHHHHHHHHhccCCCcEEEEEcCCcccccchHHHHH
Q psy568 759 HLLLIGVSGAGKTTLSRFVAFMNGLS-VFQIRAHNKY-TGADFDEDLRTVLRRSGCKNEKIAFLLDESNVLESGFLERMN 836 (1614)
Q Consensus 759 h~LLvG~~GsGKtsl~rlaA~~~~~~-~~~i~~~~~~-~~~df~~~lk~~l~~ag~~~~~~v~ll~d~~i~~~~~le~in 836 (1614)
.++|+||+|+|||||+|++|....-. .+.|+++... ++.|.++-+...-..-...++++++++|+-+- .|
T Consensus 164 SmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a~t~dvR~ife~aq~~~~l~krkTilFiDEiHR--------FN 235 (554)
T KOG2028|consen 164 SMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNAKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHR--------FN 235 (554)
T ss_pred ceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccccchHHHHHHHHHHHHHHhhhcceeEEEeHHhhh--------hh
Confidence 49999999999999999999876433 3444444332 34554444433333333455678888876422 11
Q ss_pred HhhccCCCCCCCChhhHHHHHHHhHHHHHHcCCCCCCHHHHHHHHHHHHhhcceEEEEECCCChhhHHHhhhCccccccc
Q psy568 837 TLLANGEIPGLFEGDEYTTLMTQCKEGAQREGLMLDSNEELYKWFTQQVMKNLHVVFTMNPSSEGLKDRAATSPALFNRC 916 (1614)
Q Consensus 837 ~lL~~G~v~~Lf~~eE~~~i~~~~~~~~~~~~~~~~s~~~l~~~f~~rv~~nlhivl~~sp~~~~~r~~~~~~PaL~~~~ 916 (1614)
- +++ +.|.-.|-+..-+.+--....+.|+ ..-+|+++|
T Consensus 236 k--------------------------sQQ------------D~fLP~VE~G~I~lIGATTENPSFq----ln~aLlSRC 273 (554)
T KOG2028|consen 236 K--------------------------SQQ------------DTFLPHVENGDITLIGATTENPSFQ----LNAALLSRC 273 (554)
T ss_pred h--------------------------hhh------------hcccceeccCceEEEecccCCCccc----hhHHHHhcc
Confidence 0 000 0011111111111111111223343 467899999
Q ss_pred eecccCCCcHHHHHHHHHHhhccc
Q psy568 917 VLNWFGDWSDTALYQVAKEFTSKI 940 (1614)
Q Consensus 917 ~i~wf~~W~~eaL~~va~~~l~~~ 940 (1614)
-|.-....+-+++..|-++-+..+
T Consensus 274 ~VfvLekL~~n~v~~iL~raia~l 297 (554)
T KOG2028|consen 274 RVFVLEKLPVNAVVTILMRAIASL 297 (554)
T ss_pred ceeEeccCCHHHHHHHHHHHHHhh
Confidence 999999999999999988866543
No 308
>KOG0745|consensus
Probab=97.00 E-value=0.00085 Score=77.76 Aligned_cols=79 Identities=20% Similarity=0.267 Sum_probs=50.6
Q ss_pred cCCCEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCCHHHHHhHhhcccceeec-CCccccccccCCceEEEEecc
Q psy568 415 EHKPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTPELLLKTFDHYCEYRKT-PNGVILSPIQLGKWLVLFCDE 493 (1614)
Q Consensus 415 ~~~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~~~~l~~~~~~~~~~~~~-~~g~~~~p~~~gk~~vlfiDd 493 (1614)
..-+|||.||+|+|||.+++.+++-+ +.++..-+|+..|.+..+-.-+++...+--. ..+- +. ..++.|+||||
T Consensus 225 eKSNvLllGPtGsGKTllaqTLAr~l-dVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~n-Ve---kAQqGIVflDE 299 (564)
T KOG0745|consen 225 EKSNVLLLGPTGSGKTLLAQTLARVL-DVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYN-VE---KAQQGIVFLDE 299 (564)
T ss_pred ecccEEEECCCCCchhHHHHHHHHHh-CCCeEEecccchhhcccccccHHHHHHHHHHHccCC-HH---HHhcCeEEEeh
Confidence 46789999999999999888888777 8888888898877653222222221111000 0011 11 23457899999
Q ss_pred CCCCC
Q psy568 494 INLPD 498 (1614)
Q Consensus 494 in~p~ 498 (1614)
++...
T Consensus 300 vDKi~ 304 (564)
T KOG0745|consen 300 VDKIT 304 (564)
T ss_pred hhhhc
Confidence 99643
No 309
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=96.99 E-value=0.0035 Score=79.98 Aligned_cols=146 Identities=21% Similarity=0.243 Sum_probs=79.5
Q ss_pred hhhHHHHHHHHHHHHHHhccCCccEEEeecCCCChHHHHHHHHHHcCCe-----------------------------EE
Q psy568 736 LVLFDEVLDHVLRIDRIFRQPQGHLLLIGVSGAGKTTLSRFVAFMNGLS-----------------------------VF 786 (1614)
Q Consensus 736 lvlf~~~i~hi~ri~Ril~~p~gh~LLvG~~GsGKtsl~rlaA~~~~~~-----------------------------~~ 786 (1614)
++..+.++.++.+..+-=+.|+ ++||.||+|+||||+++++|...++. ++
T Consensus 26 liGq~~~v~~L~~~~~~gri~h-a~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~~i~~g~h~Dv~ 104 (598)
T PRK09111 26 LIGQEAMVRTLTNAFETGRIAQ-AFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQAIMEGRHVDVL 104 (598)
T ss_pred hcCcHHHHHHHHHHHHcCCCCc-eEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHHHHhcCCCCceE
Confidence 4444555555555444323333 49999999999999999999876543 22
Q ss_pred EEEecCCCChhcHHHHHHHHHHHhccCCCcEEEEEcCCcccccchHHHHHHhhcc-----CCCCCCCChhhHHHHHHHhH
Q psy568 787 QIRAHNKYTGADFDEDLRTVLRRSGCKNEKIAFLLDESNVLESGFLERMNTLLAN-----GEIPGLFEGDEYTTLMTQCK 861 (1614)
Q Consensus 787 ~i~~~~~~~~~df~~~lk~~l~~ag~~~~~~v~ll~d~~i~~~~~le~in~lL~~-----G~v~~Lf~~eE~~~i~~~~~ 861 (1614)
++...+..++.+.++ +..........+..-++++++.+..+.. ..|.||.+ +.+.=+|...+.+.+...++
T Consensus 105 e~~a~s~~gvd~IRe-Iie~~~~~P~~a~~KVvIIDEad~Ls~~---a~naLLKtLEePp~~~~fIl~tte~~kll~tI~ 180 (598)
T PRK09111 105 EMDAASHTGVDDIRE-IIESVRYRPVSARYKVYIIDEVHMLSTA---AFNALLKTLEEPPPHVKFIFATTEIRKVPVTVL 180 (598)
T ss_pred EecccccCCHHHHHH-HHHHHHhchhcCCcEEEEEEChHhCCHH---HHHHHHHHHHhCCCCeEEEEEeCChhhhhHHHH
Confidence 333333344444333 2222333334556667888886655543 34455432 34444566667666665555
Q ss_pred HHHHHcCCCCCCHHHHHHHHHHHHh
Q psy568 862 EGAQREGLMLDSNEELYKWFTQQVM 886 (1614)
Q Consensus 862 ~~~~~~~~~~~s~~~l~~~f~~rv~ 886 (1614)
..++.-.....+.+++..|+.+.++
T Consensus 181 SRcq~~~f~~l~~~el~~~L~~i~~ 205 (598)
T PRK09111 181 SRCQRFDLRRIEADVLAAHLSRIAA 205 (598)
T ss_pred hheeEEEecCCCHHHHHHHHHHHHH
Confidence 4443322222344555555554443
No 310
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=96.94 E-value=0.014 Score=71.39 Aligned_cols=153 Identities=18% Similarity=0.238 Sum_probs=84.2
Q ss_pred ccCCccEEEeecCCCChHHHHHHHHHHcCCeEEEEEecCCCC--hhcHHHHHHHHHHHhccCCCcEEEEEcCCcccccch
Q psy568 754 RQPQGHLLLIGVSGAGKTTLSRFVAFMNGLSVFQIRAHNKYT--GADFDEDLRTVLRRSGCKNEKIAFLLDESNVLESGF 831 (1614)
Q Consensus 754 ~~p~gh~LLvG~~GsGKtsl~rlaA~~~~~~~~~i~~~~~~~--~~df~~~lk~~l~~ag~~~~~~v~ll~d~~i~~~~~ 831 (1614)
..|+| +||.||+|||||++++.+|...+.+++.+..+.-.. ..+....++.++..+. ...|.++++||-+.
T Consensus 163 ~~p~g-vLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~-~~~p~IlfiDEiD~----- 235 (389)
T PRK03992 163 EPPKG-VLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQKFIGEGARLVRELFELAR-EKAPSIIFIDEIDA----- 235 (389)
T ss_pred CCCCc-eEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHhhccchHHHHHHHHHHHH-hcCCeEEEEechhh-----
Confidence 34555 999999999999999999999999988886543211 1112233555565553 35677888887432
Q ss_pred HHHHHHhhccCCCCCCCChhhHHHHHHHhHHHHHHcCCCCCCHHHHHHHHHHHHhhcceEEEEECCCChhhHHHhhhCcc
Q psy568 832 LERMNTLLANGEIPGLFEGDEYTTLMTQCKEGAQREGLMLDSNEELYKWFTQQVMKNLHVVFTMNPSSEGLKDRAATSPA 911 (1614)
Q Consensus 832 le~in~lL~~G~v~~Lf~~eE~~~i~~~~~~~~~~~~~~~~s~~~l~~~f~~rv~~nlhivl~~sp~~~~~r~~~~~~Pa 911 (1614)
+.....-.+--...+....+..+-... .|. .-+.++.|+.+.+... ..-|+
T Consensus 236 ------l~~~r~~~~~~~~~~~~~~l~~lL~~l--d~~--------------~~~~~v~VI~aTn~~~-------~ld~a 286 (389)
T PRK03992 236 ------IAAKRTDSGTSGDREVQRTLMQLLAEM--DGF--------------DPRGNVKIIAATNRID-------ILDPA 286 (389)
T ss_pred ------hhcccccCCCCccHHHHHHHHHHHHhc--ccc--------------CCCCCEEEEEecCChh-------hCCHH
Confidence 221110001111122222222111110 010 0113566666665431 13455
Q ss_pred cccc--c-eecccCCCcHHHHHHHHHHhhcccCC
Q psy568 912 LFNR--C-VLNWFGDWSDTALYQVAKEFTSKIDL 942 (1614)
Q Consensus 912 L~~~--~-~i~wf~~W~~eaL~~va~~~l~~~~~ 942 (1614)
|..+ + .+.+|..-+.++...+...++....+
T Consensus 287 llRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~ 320 (389)
T PRK03992 287 ILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNL 320 (389)
T ss_pred HcCCccCceEEEECCCCHHHHHHHHHHHhccCCC
Confidence 5532 2 35678888888999998888776543
No 311
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.92 E-value=0.0038 Score=74.03 Aligned_cols=141 Identities=18% Similarity=0.161 Sum_probs=85.4
Q ss_pred HhccEEEEecCCCCChhhHHHHHHHHHHHhhc----CC---------------ceEEEeCCCCCCcCcccccccCCCCcc
Q psy568 41 NLNHGLMMVGPSGSGKSTAWKVLLKALERYEG----VE---------------GVAHIIDPKAISKEALYGVLDPNTREW 101 (1614)
Q Consensus 41 ~~r~gVmlvG~~gsGKTt~~~~L~~al~~~~~----~~---------------~~~~~inPkais~~eLyG~~d~~t~eW 101 (1614)
+..|+.++.||+|+|||++.+.+++++.--.. .+ ...+.+.|.+-. +..+..
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~---------~~~g~~ 89 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDE---------PENGRK 89 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEeccccc---------cccccc
Confidence 78899999999999999999999999841110 01 124455553200 000111
Q ss_pred ccchHHHHHHHHHhhhcC--CCCCceEEEEccCCC---hhhhhhhhhhhcCCCccccCCCceeeCCCCceEEEEeccccc
Q psy568 102 TDGLFTHILRRIIDNVRG--EISKRQWIIFDGDVD---PEWVENLNSVLDDNKLLTLPNGERLSLPPNIRIMFEVQDLKY 176 (1614)
Q Consensus 102 ~DGvls~i~r~~~~~~~~--~~~~~~WivfDG~vd---~~WiE~lnsvLDdnk~L~L~nGeri~l~~~~~~iFEv~dL~~ 176 (1614)
...+=..-+|+......- ....++.++ |-|+| +.....|-..|++. ++++.+|+-+++...
T Consensus 90 ~~~I~id~iR~l~~~~~~~p~~~~~kV~i-iEp~~~Ld~~a~naLLk~LEep-------------~~~~~~Ilvth~~~~ 155 (325)
T PRK08699 90 LLQIKIDAVREIIDNVYLTSVRGGLRVIL-IHPAESMNLQAANSLLKVLEEP-------------PPQVVFLLVSHAADK 155 (325)
T ss_pred CCCcCHHHHHHHHHHHhhCcccCCceEEE-EechhhCCHHHHHHHHHHHHhC-------------cCCCEEEEEeCChHh
Confidence 112334445665433221 123455555 55554 44444444444331 345789999999999
Q ss_pred cCccccccceeEEecCcccchHHHHHHHHHh
Q psy568 177 ATLATVSRCGMIWFSEDVLSTEMIFENYLSR 207 (1614)
Q Consensus 177 ASPAtVSRcgmv~~~~~~l~~~~~~~~~~~~ 207 (1614)
+.|+..|||-.+.+.+-. ..-+..|+..
T Consensus 156 ll~ti~SRc~~~~~~~~~---~~~~~~~L~~ 183 (325)
T PRK08699 156 VLPTIKSRCRKMVLPAPS---HEEALAYLRE 183 (325)
T ss_pred ChHHHHHHhhhhcCCCCC---HHHHHHHHHh
Confidence 988889999999998753 3456678754
No 312
>PHA02562 46 endonuclease subunit; Provisional
Probab=96.91 E-value=1.4 Score=57.30 Aligned_cols=26 Identities=31% Similarity=0.396 Sum_probs=23.7
Q ss_pred CccEEEeecCCCChHHHHHHHHHHcC
Q psy568 757 QGHLLLIGVSGAGKTTLSRFVAFMNG 782 (1614)
Q Consensus 757 ~gh~LLvG~~GsGKtsl~rlaA~~~~ 782 (1614)
.|-.+++|+.|+||||+....+|+++
T Consensus 27 ~g~~~i~G~NG~GKStll~aI~~~l~ 52 (562)
T PHA02562 27 VKKTLITGKNGAGKSTMLEALTFALF 52 (562)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHc
Confidence 57799999999999999999999874
No 313
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=96.89 E-value=0.0039 Score=76.06 Aligned_cols=73 Identities=26% Similarity=0.390 Sum_probs=48.6
Q ss_pred cCCccEEEeecCCCChHHHHHHHHHHcCCeEEEEEecC----CCChhcHHHHHHHHHHHhc---cCCCcEEEEEcCCccc
Q psy568 755 QPQGHLLLIGVSGAGKTTLSRFVAFMNGLSVFQIRAHN----KYTGADFDEDLRTVLRRSG---CKNEKIAFLLDESNVL 827 (1614)
Q Consensus 755 ~p~gh~LLvG~~GsGKtsl~rlaA~~~~~~~~~i~~~~----~~~~~df~~~lk~~l~~ag---~~~~~~v~ll~d~~i~ 827 (1614)
.+.+|+||+||+|||||++++.+|...+.+++.++.+. .|-..+...-+..++..+. ....+.++++|+-+-.
T Consensus 106 ~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl 185 (412)
T PRK05342 106 LQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKI 185 (412)
T ss_pred cCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhh
Confidence 36789999999999999999999999999998877643 2222333333333333321 1234567777775444
No 314
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=96.87 E-value=0.0035 Score=75.23 Aligned_cols=78 Identities=26% Similarity=0.303 Sum_probs=52.1
Q ss_pred cCCccEEEeecCCCChHHHHHHHHHHcCCeEEEEEecCCCChhcHHHHHHHHHHHhccCCCcEEEEEcCCcccccchHHH
Q psy568 755 QPQGHLLLIGVSGAGKTTLSRFVAFMNGLSVFQIRAHNKYTGADFDEDLRTVLRRSGCKNEKIAFLLDESNVLESGFLER 834 (1614)
Q Consensus 755 ~p~gh~LLvG~~GsGKtsl~rlaA~~~~~~~~~i~~~~~~~~~df~~~lk~~l~~ag~~~~~~v~ll~d~~i~~~~~le~ 834 (1614)
.|.+|++|.||+|+|||++++.+|...+..+..+...... -.+++..++... +.+.++++||-+......-|.
T Consensus 49 ~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~----~~~~l~~~l~~l---~~~~vl~IDEi~~l~~~~~e~ 121 (328)
T PRK00080 49 EALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALE----KPGDLAAILTNL---EEGDVLFIDEIHRLSPVVEEI 121 (328)
T ss_pred CCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEeccccc----ChHHHHHHHHhc---ccCCEEEEecHhhcchHHHHH
Confidence 4456899999999999999999999999887765433221 224455555443 345688888876555444444
Q ss_pred HHHhh
Q psy568 835 MNTLL 839 (1614)
Q Consensus 835 in~lL 839 (1614)
+.+++
T Consensus 122 l~~~~ 126 (328)
T PRK00080 122 LYPAM 126 (328)
T ss_pred HHHHH
Confidence 43433
No 315
>KOG2035|consensus
Probab=96.87 E-value=0.014 Score=64.39 Aligned_cols=146 Identities=19% Similarity=0.306 Sum_probs=90.7
Q ss_pred HHHHHHhcC--CCEEEecCCCCchHHHHHHHHhcCCCCc-----eEE-------------EEccc----CCCHHH-----
Q psy568 408 LLYTWLAEH--KPLVLCGPPGSGKTMTLLSALRALPDME-----VVS-------------LNFSS----ATTPEL----- 458 (1614)
Q Consensus 408 ll~~~l~~~--~~vLL~Gp~GtGKT~lv~~~~~~l~~~~-----~~~-------------i~~s~----~t~~~~----- 458 (1614)
.+..+...+ -|.+++||+|+||-|.+..+++.+-|.. +.. -..|+ ..+|++
T Consensus 24 ~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEitPSDaG~~D 103 (351)
T KOG2035|consen 24 LLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEITPSDAGNYD 103 (351)
T ss_pred HHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEEeChhhcCccc
Confidence 344444445 6899999999999998988888764311 100 01111 123322
Q ss_pred ---HHhHhhcccceeecCCccccccccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeE
Q psy568 459 ---LLKTFDHYCEYRKTPNGVILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQ 535 (1614)
Q Consensus 459 ---l~~~~~~~~~~~~~~~g~~~~p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~ 535 (1614)
+|..+.....-+. .-... +.+ .=|+.|-+.|-.+.| +...||.-|+. |. .+++
T Consensus 104 RvViQellKevAQt~q----ie~~~-qr~-fKvvvi~ead~LT~d------AQ~aLRRTMEk---Ys---------~~~R 159 (351)
T KOG2035|consen 104 RVVIQELLKEVAQTQQ----IETQG-QRP-FKVVVINEADELTRD------AQHALRRTMEK---YS---------SNCR 159 (351)
T ss_pred HHHHHHHHHHHHhhcc----hhhcc-ccc-eEEEEEechHhhhHH------HHHHHHHHHHH---Hh---------cCce
Confidence 3333322111110 00001 111 124456777775554 66778888885 43 3688
Q ss_pred EEEeecCCCCCCCCCCcccccccccEEEecCCChhHHHHHHHHHHHh
Q psy568 536 CVGACNPPTDPGRKPLSHRFLRHVPVIYVDYPGETSLKQIYGTFSRA 582 (1614)
Q Consensus 536 ~iaa~n~~~~~g~~~l~~r~~r~f~~i~i~~p~~~~l~~I~~~~~~~ 582 (1614)
+|.+||..+ .+-+...+|+-.+.+|.|+++++..+++.++..
T Consensus 160 lIl~cns~S-----riIepIrSRCl~iRvpaps~eeI~~vl~~v~~k 201 (351)
T KOG2035|consen 160 LILVCNSTS-----RIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKK 201 (351)
T ss_pred EEEEecCcc-----cchhHHhhheeEEeCCCCCHHHHHHHHHHHHHH
Confidence 999998764 688889999999999999999999998887664
No 316
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=96.86 E-value=0.007 Score=72.63 Aligned_cols=82 Identities=21% Similarity=0.224 Sum_probs=48.4
Q ss_pred ccEEEeecCCCChHHHHHHHHHHcC-----CeEEEEEecCCCChhcHHHHHHHHHHHhccC-CCcEEEEEcCCcccccch
Q psy568 758 GHLLLIGVSGAGKTTLSRFVAFMNG-----LSVFQIRAHNKYTGADFDEDLRTVLRRSGCK-NEKIAFLLDESNVLESGF 831 (1614)
Q Consensus 758 gh~LLvG~~GsGKtsl~rlaA~~~~-----~~~~~i~~~~~~~~~df~~~lk~~l~~ag~~-~~~~v~ll~d~~i~~~~~ 831 (1614)
.|++|.|++|+|||++++.++.... ..+..++.+...+...+.+.++......... ..+-++++|+.+...+..
T Consensus 39 ~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~~~ 118 (319)
T PRK00440 39 PHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDERGIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTSDA 118 (319)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccccccchHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCHHH
Confidence 4799999999999999998887642 2234443333333333445555544333222 345678888876555444
Q ss_pred HHHHHHhh
Q psy568 832 LERMNTLL 839 (1614)
Q Consensus 832 le~in~lL 839 (1614)
.+.+-.++
T Consensus 119 ~~~L~~~l 126 (319)
T PRK00440 119 QQALRRTM 126 (319)
T ss_pred HHHHHHHH
Confidence 44444444
No 317
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=96.84 E-value=0.0074 Score=72.29 Aligned_cols=167 Identities=21% Similarity=0.223 Sum_probs=98.9
Q ss_pred chHHHHHHHHHHHHHhccEEEEecCCCCChhhHHHHHHHHHHHhhcC-CceEEEeCCC--C--------CCcCccc---c
Q psy568 27 GPWMEKVLQLYQISNLNHGLMMVGPSGSGKSTAWKVLLKALERYEGV-EGVAHIIDPK--A--------ISKEALY---G 92 (1614)
Q Consensus 27 ~~~~~K~~qL~e~~~~r~gVmlvG~~gsGKTt~~~~L~~al~~~~~~-~~~~~~inPk--a--------is~~eLy---G 92 (1614)
+.-+......+..=+..|++++.||+|+||||+.+.+++.+..-... .......+|- + -+..+++ .
T Consensus 29 ~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~~i~~~~hPdl~~l~~ 108 (351)
T PRK09112 29 EEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWRQIAQGAHPNLLHITR 108 (351)
T ss_pred HHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHHHHHcCCCCCEEEeec
Confidence 34456677777777888999999999999999999999987431100 0000011111 0 0111221 1
Q ss_pred cccCCCCccccchHHHHHHHHHhhhc--CCCCCceEEEEccCCChhhhhhhhhhhcCCCccccCCCceeeCCCCceEEEE
Q psy568 93 VLDPNTREWTDGLFTHILRRIIDNVR--GEISKRQWIIFDGDVDPEWVENLNSVLDDNKLLTLPNGERLSLPPNIRIMFE 170 (1614)
Q Consensus 93 ~~d~~t~eW~DGvls~i~r~~~~~~~--~~~~~~~WivfDG~vd~~WiE~lnsvLDdnk~L~L~nGeri~l~~~~~~iFE 170 (1614)
..|+.++....++-..-+|+...... .....++.+|+|- +|..=.++.|.+| |+| |. .|++..+|+-
T Consensus 109 ~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDe-Ad~l~~~aanaLL---k~L-----EE--pp~~~~fiLi 177 (351)
T PRK09112 109 PFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDP-ADDMNRNAANAIL---KTL-----EE--PPARALFILI 177 (351)
T ss_pred ccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEc-hhhcCHHHHHHHH---HHH-----hc--CCCCceEEEE
Confidence 22333333344455556676543221 1233567888886 3333344556665 333 32 3567788888
Q ss_pred eccccccCccccccceeEEecCcccchHHHHHHHHHh
Q psy568 171 VQDLKYATLATVSRCGMIWFSEDVLSTEMIFENYLSR 207 (1614)
Q Consensus 171 v~dL~~ASPAtVSRcgmv~~~~~~l~~~~~~~~~~~~ 207 (1614)
+++.....|...|||-.+.+.+-. ..-+..|+..
T Consensus 178 t~~~~~llptIrSRc~~i~l~pl~---~~~~~~~L~~ 211 (351)
T PRK09112 178 SHSSGRLLPTIRSRCQPISLKPLD---DDELKKALSH 211 (351)
T ss_pred ECChhhccHHHHhhccEEEecCCC---HHHHHHHHHH
Confidence 888888889999999999987743 2345667754
No 318
>KOG0734|consensus
Probab=96.84 E-value=0.0023 Score=75.94 Aligned_cols=64 Identities=34% Similarity=0.590 Sum_probs=50.2
Q ss_pred cCCccEEEeecCCCChHHHHHHHHHHcCCeEEEEEecCCCChhcHHHH--------HHHHHHHhccCCCcEEEEEcCCcc
Q psy568 755 QPQGHLLLIGVSGAGKTTLSRFVAFMNGLSVFQIRAHNKYTGADFDED--------LRTVLRRSGCKNEKIAFLLDESNV 826 (1614)
Q Consensus 755 ~p~gh~LLvG~~GsGKtsl~rlaA~~~~~~~~~i~~~~~~~~~df~~~--------lk~~l~~ag~~~~~~v~ll~d~~i 826 (1614)
.|.| +||+||||+|||-|+|..|--+|.++|.. +.++|.+- +|.++..| ...-|+++++|+-+-
T Consensus 336 LPKG-VLLvGPPGTGKTlLARAvAGEA~VPFF~~------sGSEFdEm~VGvGArRVRdLF~aA-k~~APcIIFIDEiDa 407 (752)
T KOG0734|consen 336 LPKG-VLLVGPPGTGKTLLARAVAGEAGVPFFYA------SGSEFDEMFVGVGARRVRDLFAAA-KARAPCIIFIDEIDA 407 (752)
T ss_pred CCCc-eEEeCCCCCchhHHHHHhhcccCCCeEec------cccchhhhhhcccHHHHHHHHHHH-HhcCCeEEEEechhh
Confidence 6888 99999999999999999999999999975 45666653 34444444 566789999987543
No 319
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.84 E-value=0.011 Score=62.86 Aligned_cols=129 Identities=22% Similarity=0.297 Sum_probs=75.7
Q ss_pred HHHHHHHHhcC---CCEEEecCCCCchHHHHHHHHhcCCC----------------------CceEEEEccc---CCCHH
Q psy568 406 ESLLYTWLAEH---KPLVLCGPPGSGKTMTLLSALRALPD----------------------MEVVSLNFSS---ATTPE 457 (1614)
Q Consensus 406 ~~ll~~~l~~~---~~vLL~Gp~GtGKT~lv~~~~~~l~~----------------------~~~~~i~~s~---~t~~~ 457 (1614)
...+..++..+ +..|++||+|+||++++..+++.+.. ..+..+.-.. ....+
T Consensus 6 ~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~i~i~ 85 (162)
T PF13177_consen 6 IELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKKSIKID 85 (162)
T ss_dssp HHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSSSBSHH
T ss_pred HHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccchhhHH
Confidence 34555566655 45799999999999999999975422 1133333332 23455
Q ss_pred HHHhHhhcccceeecCCccccccccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEE
Q psy568 458 LLLKTFDHYCEYRKTPNGVILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCV 537 (1614)
Q Consensus 458 ~l~~~~~~~~~~~~~~~g~~~~p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~i 537 (1614)
++....+ .+. ..|.. +++=|++|||++. -+......|+-.+|.-. .++.||
T Consensus 86 ~ir~i~~-~~~---------~~~~~-~~~KviiI~~ad~------l~~~a~NaLLK~LEepp------------~~~~fi 136 (162)
T PF13177_consen 86 QIREIIE-FLS---------LSPSE-GKYKVIIIDEADK------LTEEAQNALLKTLEEPP------------ENTYFI 136 (162)
T ss_dssp HHHHHHH-HCT---------SS-TT-SSSEEEEEETGGG------S-HHHHHHHHHHHHSTT------------TTEEEE
T ss_pred HHHHHHH-HHH---------HHHhc-CCceEEEeehHhh------hhHHHHHHHHHHhcCCC------------CCEEEE
Confidence 5553332 222 22322 3445666799998 44445566666667421 356777
Q ss_pred EeecCCCCCCCCCCcccccccccEEEecCCC
Q psy568 538 GACNPPTDPGRKPLSHRFLRHVPVIYVDYPG 568 (1614)
Q Consensus 538 aa~n~~~~~g~~~l~~r~~r~f~~i~i~~p~ 568 (1614)
-+++.+. .+.+-+.+|+..+.++.+|
T Consensus 137 L~t~~~~-----~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 137 LITNNPS-----KILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp EEES-GG-----GS-HHHHTTSEEEEE----
T ss_pred EEECChH-----HChHHHHhhceEEecCCCC
Confidence 7776554 6899999999999988654
No 320
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=96.84 E-value=0.029 Score=68.40 Aligned_cols=152 Identities=19% Similarity=0.201 Sum_probs=80.5
Q ss_pred ccCCccEEEeecCCCChHHHHHHHHHHcCCeEEEEEecCCCC--hhcHHHHHHHHHHHhccCCCcEEEEEcCCcccccch
Q psy568 754 RQPQGHLLLIGVSGAGKTTLSRFVAFMNGLSVFQIRAHNKYT--GADFDEDLRTVLRRSGCKNEKIAFLLDESNVLESGF 831 (1614)
Q Consensus 754 ~~p~gh~LLvG~~GsGKtsl~rlaA~~~~~~~~~i~~~~~~~--~~df~~~lk~~l~~ag~~~~~~v~ll~d~~i~~~~~ 831 (1614)
..|+| +||+||+|+|||++++.+|...+..++.+....... ..+-...++.++..+. .+.|.++++||-
T Consensus 154 ~~p~g-vLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~-~~~p~il~iDEi------- 224 (364)
T TIGR01242 154 EPPKG-VLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVRKYIGEGARLVREIFELAK-EKAPSIIFIDEI------- 224 (364)
T ss_pred CCCce-EEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHHHhhhHHHHHHHHHHHHHH-hcCCcEEEhhhh-------
Confidence 34565 999999999999999999999999888764221100 0111122444554443 345777777763
Q ss_pred HHHHHHhhccCCCCCCCC-hhhHHHHHHHhHHHHHHcCCCCCCHHHHHHHHHHHHhhcceEEEEECCCChhhHHHhhhCc
Q psy568 832 LERMNTLLANGEIPGLFE-GDEYTTLMTQCKEGAQREGLMLDSNEELYKWFTQQVMKNLHVVFTMNPSSEGLKDRAATSP 910 (1614)
Q Consensus 832 le~in~lL~~G~v~~Lf~-~eE~~~i~~~~~~~~~~~~~~~~s~~~l~~~f~~rv~~nlhivl~~sp~~~~~r~~~~~~P 910 (1614)
..+..... .+..+ ..+....+..+-... .+. .-..++.|+.+.+... . .-|
T Consensus 225 ----D~l~~~~~-~~~~~~~~~~~~~l~~ll~~l--d~~--------------~~~~~v~vI~ttn~~~-~------ld~ 276 (364)
T TIGR01242 225 ----DAIAAKRT-DSGTSGDREVQRTLMQLLAEL--DGF--------------DPRGNVKVIAATNRPD-I------LDP 276 (364)
T ss_pred ----hhhccccc-cCCCCccHHHHHHHHHHHHHh--hCC--------------CCCCCEEEEEecCChh-h------CCh
Confidence 23322110 01111 111111111111000 000 0023666666665432 1 244
Q ss_pred cccc---cceecccCCCcHHHHHHHHHHhhcccCC
Q psy568 911 ALFN---RCVLNWFGDWSDTALYQVAKEFTSKIDL 942 (1614)
Q Consensus 911 aL~~---~~~i~wf~~W~~eaL~~va~~~l~~~~~ 942 (1614)
++.. ...+.+|...+.++...+...++....+
T Consensus 277 al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l 311 (364)
T TIGR01242 277 ALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKL 311 (364)
T ss_pred hhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCC
Confidence 5543 2335688888889999998887765543
No 321
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.82 E-value=3.5 Score=59.11 Aligned_cols=128 Identities=13% Similarity=0.126 Sum_probs=61.1
Q ss_pred HHHHHHHH-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHhhhhhHHHH
Q psy568 1228 QISYADML-KKVEPLRLELKSLEVQASENKAKGEETKDLITQLEKSIASYKDEY------AQLIAQATAIKTDLDNVQAK 1300 (1614)
Q Consensus 1228 i~~y~~v~-~~v~P~~~~l~~~~~~~~~~~~~l~~~~~~l~~~e~~l~~l~~~~------~~~~~~~~~l~~~l~~~~~~ 1300 (1614)
+..|.+.. +++.-++.++.+++.++...+.++++....+..+...+..++.-. ..+..+...++.+++.+..+
T Consensus 735 ~~~~~~l~~~eip~l~~~l~~le~~l~~~~~~le~~~~~l~~~~~~~~~~esL~~~v~~i~r~~~ei~~l~~qie~l~~~ 814 (1311)
T TIGR00606 735 RQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAK 814 (1311)
T ss_pred HHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555543 455556666666666666666666666555555555554442211 11123333333333333333
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhc
Q psy568 1301 FYEYAQLIAQATAIKTDLDNVQAKVERSMALLKSLGIERERWEATSETFRSQMATI 1356 (1614)
Q Consensus 1301 ~~~~~~~~~~~~~l~~~~~~~~~rl~~a~~l~~~L~~e~~rW~~~~~~~~~~~~~l 1356 (1614)
+..+.. ....+.++.+++.++.++..+..=++.+..+..+....+..++.+...+
T Consensus 815 l~~~~~-~~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el 869 (1311)
T TIGR00606 815 LQGSDL-DRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNEL 869 (1311)
T ss_pred hccccc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222211 0112234555555555555555555555555566666666665554443
No 322
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.81 E-value=0.0073 Score=76.67 Aligned_cols=106 Identities=19% Similarity=0.250 Sum_probs=59.6
Q ss_pred CccE-EEeecCCCChHHHHHHHHHHcCC--------------------------eEEEEEecCCCChhcHHHHHHHHHHH
Q psy568 757 QGHL-LLIGVSGAGKTTLSRFVAFMNGL--------------------------SVFQIRAHNKYTGADFDEDLRTVLRR 809 (1614)
Q Consensus 757 ~gh~-LLvG~~GsGKtsl~rlaA~~~~~--------------------------~~~~i~~~~~~~~~df~~~lk~~l~~ 809 (1614)
-.|+ ||.||+|+||||+++.+|...++ ++++++....-++.+.++ ++.-...
T Consensus 34 ~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~dvieidaas~~gvd~iRe-l~~~~~~ 112 (584)
T PRK14952 34 INHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSIDVVELDAASHGGVDDTRE-LRDRAFY 112 (584)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCceEEEeccccccCHHHHHH-HHHHHHh
Confidence 3564 89999999999999999876443 234443333334444432 3333333
Q ss_pred hccCCCcEEEEEcCCcccccchHHHHHHhhcc--CCCCCCCChhhHHHHHHHhHHH
Q psy568 810 SGCKNEKIAFLLDESNVLESGFLERMNTLLAN--GEIPGLFEGDEYTTLMTQCKEG 863 (1614)
Q Consensus 810 ag~~~~~~v~ll~d~~i~~~~~le~in~lL~~--G~v~~Lf~~eE~~~i~~~~~~~ 863 (1614)
....++.-++++|+.+....+-.+.|-..|.. +.+.-+|...+...|+..++..
T Consensus 113 ~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~TI~SR 168 (584)
T PRK14952 113 APAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSR 168 (584)
T ss_pred hhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHHHHHHh
Confidence 44456677888999877665533222222322 3333345555555555544433
No 323
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=96.80 E-value=0.013 Score=71.51 Aligned_cols=69 Identities=26% Similarity=0.379 Sum_probs=47.0
Q ss_pred ccCCccEEEeecCCCChHHHHHHHHHHcCCeEEEEEecCCCC--hhcHHHHHHHHHHHhccCCCcEEEEEcCC
Q psy568 754 RQPQGHLLLIGVSGAGKTTLSRFVAFMNGLSVFQIRAHNKYT--GADFDEDLRTVLRRSGCKNEKIAFLLDES 824 (1614)
Q Consensus 754 ~~p~gh~LLvG~~GsGKtsl~rlaA~~~~~~~~~i~~~~~~~--~~df~~~lk~~l~~ag~~~~~~v~ll~d~ 824 (1614)
..|+| +||.||+|||||++++.+|..++..++.+..+.... ..+-...++.++..+. ...|.++++||-
T Consensus 177 ~~pkg-vLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~k~~ge~~~~lr~lf~~A~-~~~P~ILfIDEI 247 (398)
T PTZ00454 177 DPPRG-VLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQKYLGEGPRMVRDVFRLAR-ENAPSIIFIDEV 247 (398)
T ss_pred CCCce-EEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHHHhcchhHHHHHHHHHHHH-hcCCeEEEEECH
Confidence 34555 999999999999999999999999988875332110 1111223455555553 456788888873
No 324
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.80 E-value=0.0073 Score=77.22 Aligned_cols=123 Identities=17% Similarity=0.189 Sum_probs=65.3
Q ss_pred EEEeecCCCChHHHHHHHHHHcCCeE--------------------------------EEEEecCCCChhcHHHHHHHHH
Q psy568 760 LLLIGVSGAGKTTLSRFVAFMNGLSV--------------------------------FQIRAHNKYTGADFDEDLRTVL 807 (1614)
Q Consensus 760 ~LLvG~~GsGKtsl~rlaA~~~~~~~--------------------------------~~i~~~~~~~~~df~~~lk~~l 807 (1614)
.||.||+|+||||+++++|...++.. ..++.....+. ++++.+.
T Consensus 41 ~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~v----d~Ir~l~ 116 (620)
T PRK14954 41 YIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFDAGTSLNISEFDAASNNSV----DDIRQLR 116 (620)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHhccCCCCeEEecccccCCH----HHHHHHH
Confidence 78999999999999999998776631 12211111222 4444444
Q ss_pred HHh---ccCCCcEEEEEcCCcccccchHHHHHHhhcc--CCCCCCCChhhHHHHHHHhHHHHHHcCCCCCCHHHHHHHHH
Q psy568 808 RRS---GCKNEKIAFLLDESNVLESGFLERMNTLLAN--GEIPGLFEGDEYTTLMTQCKEGAQREGLMLDSNEELYKWFT 882 (1614)
Q Consensus 808 ~~a---g~~~~~~v~ll~d~~i~~~~~le~in~lL~~--G~v~~Lf~~eE~~~i~~~~~~~~~~~~~~~~s~~~l~~~f~ 882 (1614)
... ...+..-++++++.+-....-.+.+...|.. +.+-=+|..++...|+..++..++.-.....+.+++..|..
T Consensus 117 e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~TI~SRc~~vef~~l~~~ei~~~L~ 196 (620)
T PRK14954 117 ENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLDEIQSQLQ 196 (620)
T ss_pred HHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhhceEEecCCCCHHHHHHHHH
Confidence 333 4556666788888655443322222223322 22223455566666665555444333322234555555554
Q ss_pred HHHh
Q psy568 883 QQVM 886 (1614)
Q Consensus 883 ~rv~ 886 (1614)
+.++
T Consensus 197 ~i~~ 200 (620)
T PRK14954 197 MICR 200 (620)
T ss_pred HHHH
Confidence 4444
No 325
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=96.79 E-value=0.66 Score=60.03 Aligned_cols=30 Identities=27% Similarity=0.492 Sum_probs=26.3
Q ss_pred cCCccEEEeecCCCChHHHHHHHHHHcCCe
Q psy568 755 QPQGHLLLIGVSGAGKTTLSRFVAFMNGLS 784 (1614)
Q Consensus 755 ~p~gh~LLvG~~GsGKtsl~rlaA~~~~~~ 784 (1614)
...|--+++|++|+|||+++..+.+++|..
T Consensus 20 f~~g~~vitG~nGaGKS~ll~al~~~~g~~ 49 (563)
T TIGR00634 20 FERGLTVLTGETGAGKSMIIDALSLLGGQR 49 (563)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHHHhCcC
Confidence 456778999999999999999999998764
No 326
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=96.78 E-value=0.0031 Score=69.13 Aligned_cols=154 Identities=22% Similarity=0.278 Sum_probs=83.7
Q ss_pred HHHHHHHHhccEEEEecCCCCChhhHHHHHHHHHHHhh---cCCceEEEeCCCCC---CcCcccccccCCCCccccchHH
Q psy568 34 LQLYQISNLNHGLMMVGPSGSGKSTAWKVLLKALERYE---GVEGVAHIIDPKAI---SKEALYGVLDPNTREWTDGLFT 107 (1614)
Q Consensus 34 ~qL~e~~~~r~gVmlvG~~gsGKTt~~~~L~~al~~~~---~~~~~~~~inPkai---s~~eLyG~~d~~t~eW~DGvls 107 (1614)
.+.+..=+..|.+++.||+|+|||++.+.+++.+.... +.++.. ..+-..+ +..+++. +++.... .|+
T Consensus 5 ~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~-~~~c~~~~~~~~~d~~~-~~~~~~~--~~~-- 78 (188)
T TIGR00678 5 KRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGE-CPSCRLIEAGNHPDLHR-LEPEGQS--IKV-- 78 (188)
T ss_pred HHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCC-CHHHHHHHcCCCCcEEE-eccccCc--CCH--
Confidence 34455556679999999999999999999999874310 000000 0000000 0001110 1111111 121
Q ss_pred HHHHHHHhhhc--CCCCCceEEEEccCCChhhhhhhhhhhcCCCccccCCCceeeCCCCceEEEEeccccccCccccccc
Q psy568 108 HILRRIIDNVR--GEISKRQWIIFDGDVDPEWVENLNSVLDDNKLLTLPNGERLSLPPNIRIMFEVQDLKYATLATVSRC 185 (1614)
Q Consensus 108 ~i~r~~~~~~~--~~~~~~~WivfDG~vd~~WiE~lnsvLDdnk~L~L~nGeri~l~~~~~~iFEv~dL~~ASPAtVSRc 185 (1614)
..+|+...... .....++-||+|. +|..=-+..|.+|+ .| |. .|+++.+||-+.+....-|+..|||
T Consensus 79 ~~i~~i~~~~~~~~~~~~~kviiide-~~~l~~~~~~~Ll~---~l-----e~--~~~~~~~il~~~~~~~l~~~i~sr~ 147 (188)
T TIGR00678 79 DQVRELVEFLSRTPQESGRRVVIIED-AERMNEAAANALLK---TL-----EE--PPPNTLFILITPSPEKLLPTIRSRC 147 (188)
T ss_pred HHHHHHHHHHccCcccCCeEEEEEec-hhhhCHHHHHHHHH---Hh-----cC--CCCCeEEEEEECChHhChHHHHhhc
Confidence 23333222111 1234578899996 33322233444441 11 22 3578889999998999999999999
Q ss_pred eeEEecCcccchHHHHHHHHHh
Q psy568 186 GMIWFSEDVLSTEMIFENYLSR 207 (1614)
Q Consensus 186 gmv~~~~~~l~~~~~~~~~~~~ 207 (1614)
-+|.+.+-. ..-+..|+..
T Consensus 148 ~~~~~~~~~---~~~~~~~l~~ 166 (188)
T TIGR00678 148 QVLPFPPLS---EEALLQWLIR 166 (188)
T ss_pred EEeeCCCCC---HHHHHHHHHH
Confidence 998887643 2234667754
No 327
>PRK03918 chromosome segregation protein; Provisional
Probab=96.78 E-value=4.6 Score=55.81 Aligned_cols=67 Identities=6% Similarity=0.119 Sum_probs=37.7
Q ss_pred HHhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhchhHHHHHHHHHHhhcccCHHhHHHHHHH
Q psy568 1315 KTDLDNVQAKVERSMALLKSLGIERERWEATSETFRSQMATIIGDVLLSSAYLAYAGYFDQHYRQSLFST 1384 (1614)
Q Consensus 1315 ~~~~~~~~~rl~~a~~l~~~L~~e~~rW~~~~~~~~~~~~~l~gd~ll~aa~i~Y~G~f~~~~R~~l~~~ 1384 (1614)
..+++.++.+......-+..|..+...+...++.++..+..+-|-+ +-|=+.-.|++.+++..++..
T Consensus 390 ~~~l~~l~~~~~~l~~~i~~l~~~~~~~~~~i~eL~~~l~~L~~~~---~~Cp~c~~~L~~~~~~el~~~ 456 (880)
T PRK03918 390 EKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAK---GKCPVCGRELTEEHRKELLEE 456 (880)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCCCCCCCcCCchhHHHHHHH
Confidence 3444444444455555577777777777777777776655443211 011124456777777776433
No 328
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=96.78 E-value=0.011 Score=70.59 Aligned_cols=137 Identities=9% Similarity=0.149 Sum_probs=81.2
Q ss_pred HHHHHHhcC---CCEEEecCCCCchHHHHHHHHhcCCCC-------ceEEEEc--ccCCCHHHHHhHhhcccceeecCCc
Q psy568 408 LLYTWLAEH---KPLVLCGPPGSGKTMTLLSALRALPDM-------EVVSLNF--SSATTPELLLKTFDHYCEYRKTPNG 475 (1614)
Q Consensus 408 ll~~~l~~~---~~vLL~Gp~GtGKT~lv~~~~~~l~~~-------~~~~i~~--s~~t~~~~l~~~~~~~~~~~~~~~g 475 (1614)
.+...+..| +..|++||.|+|||++++.+++.+... .+..+.- ....+.+.+....+. +
T Consensus 15 ~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~ir~~~~~-~-------- 85 (313)
T PRK05564 15 RIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDIRNIIEE-V-------- 85 (313)
T ss_pred HHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHHHHHHHH-H--------
Confidence 345555554 455899999999999999999865221 1222221 122344455444321 1
Q ss_pred cccccccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCCCcccc
Q psy568 476 VILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRF 555 (1614)
Q Consensus 476 ~~~~p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~ 555 (1614)
...|. .|++-|++|||.+.- +......|.-.++. +. +++.||-+++.+. .+.+.+
T Consensus 86 -~~~p~-~~~~kv~iI~~ad~m------~~~a~naLLK~LEe-----pp-------~~t~~il~~~~~~-----~ll~TI 140 (313)
T PRK05564 86 -NKKPY-EGDKKVIIIYNSEKM------TEQAQNAFLKTIEE-----PP-------KGVFIILLCENLE-----QILDTI 140 (313)
T ss_pred -hcCcc-cCCceEEEEechhhc------CHHHHHHHHHHhcC-----CC-------CCeEEEEEeCChH-----hCcHHH
Confidence 12343 344566677998662 33333444445453 11 2344554444332 688899
Q ss_pred cccccEEEecCCChhHHHHHHHH
Q psy568 556 LRHVPVIYVDYPGETSLKQIYGT 578 (1614)
Q Consensus 556 ~r~f~~i~i~~p~~~~l~~I~~~ 578 (1614)
.+|+.++.++.|+.+++......
T Consensus 141 ~SRc~~~~~~~~~~~~~~~~l~~ 163 (313)
T PRK05564 141 KSRCQIYKLNRLSKEEIEKFISY 163 (313)
T ss_pred HhhceeeeCCCcCHHHHHHHHHH
Confidence 99999999999999998776544
No 329
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.77 E-value=0.003 Score=72.17 Aligned_cols=157 Identities=21% Similarity=0.331 Sum_probs=88.9
Q ss_pred HHHHHHHH-hccCCccEEEeecCCCChHHHHHHHHHHcCCeEEEEEecCCCChhcHHH--------HHHHHHHHhccCCC
Q psy568 745 HVLRIDRI-FRQPQGHLLLIGVSGAGKTTLSRFVAFMNGLSVFQIRAHNKYTGADFDE--------DLRTVLRRSGCKNE 815 (1614)
Q Consensus 745 hi~ri~Ri-l~~p~gh~LLvG~~GsGKtsl~rlaA~~~~~~~~~i~~~~~~~~~df~~--------~lk~~l~~ag~~~~ 815 (1614)
|.-+..++ +..|.| +||.||||+|||-|+|.+|+-.+.+|..+.- ++|.. -+|.++.-| ..+.
T Consensus 173 ~PElF~~~GI~PPKG-VLLYGPPGTGKTLLAkAVA~~T~AtFIrvvg------SElVqKYiGEGaRlVRelF~lA-reka 244 (406)
T COG1222 173 NPELFEELGIDPPKG-VLLYGPPGTGKTLLAKAVANQTDATFIRVVG------SELVQKYIGEGARLVRELFELA-REKA 244 (406)
T ss_pred CHHHHHHcCCCCCCc-eEeeCCCCCcHHHHHHHHHhccCceEEEecc------HHHHHHHhccchHHHHHHHHHH-hhcC
Confidence 44444555 678888 9999999999999999999999999998752 33321 234455544 4667
Q ss_pred cEEEEEcCCcccccchHHHHHHhhccCCCCCCCChhhHHHHHHHhHHHHHHcCCCCCCHHHHHHHHHHHHhhcceEEEEE
Q psy568 816 KIAFLLDESNVLESGFLERMNTLLANGEIPGLFEGDEYTTLMTQCKEGAQREGLMLDSNEELYKWFTQQVMKNLHVVFTM 895 (1614)
Q Consensus 816 ~~v~ll~d~~i~~~~~le~in~lL~~G~v~~Lf~~eE~~~i~~~~~~~~~~~~~~~~s~~~l~~~f~~rv~~nlhivl~~ 895 (1614)
|+.+++|+-+-.... +.++ -++| +-|.+..+-++- ++-.|. |+ +.|+.|+...
T Consensus 245 PsIIFiDEIDAIg~k---R~d~-~t~g-------DrEVQRTmleLL--~qlDGF--D~------------~~nvKVI~AT 297 (406)
T COG1222 245 PSIIFIDEIDAIGAK---RFDS-GTSG-------DREVQRTMLELL--NQLDGF--DP------------RGNVKVIMAT 297 (406)
T ss_pred CeEEEEechhhhhcc---cccC-CCCc-------hHHHHHHHHHHH--HhccCC--CC------------CCCeEEEEec
Confidence 888888764221110 0000 0011 223222222211 222343 22 3488999887
Q ss_pred CCCChhhHHHhhhCccccccceecc---cCCCcHHHHHHHHHHhhcccCCC
Q psy568 896 NPSSEGLKDRAATSPALFNRCVLNW---FGDWSDTALYQVAKEFTSKIDLD 943 (1614)
Q Consensus 896 sp~~~~~r~~~~~~PaL~~~~~i~w---f~~W~~eaL~~va~~~l~~~~~~ 943 (1614)
+-.. . .-|||..=--+|- |..-+.++-..+-.-+.+.+.+.
T Consensus 298 NR~D-~------LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~ 341 (406)
T COG1222 298 NRPD-I------LDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLA 341 (406)
T ss_pred CCcc-c------cChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCc
Confidence 6432 1 2466665444443 44334456777777666666553
No 330
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=96.77 E-value=0.0025 Score=72.53 Aligned_cols=163 Identities=15% Similarity=0.146 Sum_probs=77.1
Q ss_pred HHHHHhc--CCCEEEecCCCCchHHHHHHHHhcCCCCce--EEEEcccCCCHHHHHhH---------hhcccceeec-CC
Q psy568 409 LYTWLAE--HKPLVLCGPPGSGKTMTLLSALRALPDMEV--VSLNFSSATTPELLLKT---------FDHYCEYRKT-PN 474 (1614)
Q Consensus 409 l~~~l~~--~~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~--~~i~~s~~t~~~~l~~~---------~~~~~~~~~~-~~ 474 (1614)
+..++.. +.+++|+||.|+|||++++.+...+.+... +.+.+........+... +...+..... ..
T Consensus 11 l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 90 (234)
T PF01637_consen 11 LKELLESGPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEETSLADELSEALGISIPSIT 90 (234)
T ss_dssp HHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHHHHHCHCHHHHHHHCCTST
T ss_pred HHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 3444444 589999999999999999999998844332 22222222222222111 0000000000 00
Q ss_pred c---------ccc--------ccccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEE
Q psy568 475 G---------VIL--------SPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCV 537 (1614)
Q Consensus 475 g---------~~~--------~p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~i 537 (1614)
+ ... .-.+.++++|++|||++............+..|+.++++.. . ..++.+|
T Consensus 91 ~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~--~--------~~~~~~v 160 (234)
T PF01637_consen 91 LEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLL--S--------QQNVSIV 160 (234)
T ss_dssp TEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH--------------TTEEEE
T ss_pred chhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhcc--c--------cCCceEE
Confidence 0 000 00112344999999999865111133556777777777511 1 1234444
Q ss_pred EeecCCC-CCCCCCCcccccccccEEEecCCChhHHHHHHHHHHH
Q psy568 538 GACNPPT-DPGRKPLSHRFLRHVPVIYVDYPGETSLKQIYGTFSR 581 (1614)
Q Consensus 538 aa~n~~~-~~g~~~l~~r~~r~f~~i~i~~p~~~~l~~I~~~~~~ 581 (1614)
.+....+ ......-...+..++..+.+++.+.++....+...+.
T Consensus 161 ~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~ 205 (234)
T PF01637_consen 161 ITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFK 205 (234)
T ss_dssp EEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHH
T ss_pred EECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHH
Confidence 4433211 0000112234556667799999999999888776544
No 331
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=96.76 E-value=0.014 Score=71.62 Aligned_cols=147 Identities=21% Similarity=0.238 Sum_probs=80.9
Q ss_pred cCCccEEEeecCCCChHHHHHHHHHHcCCeEEEEEecCCCC--hhcHHHHHHHHHHHhccCCCcEEEEEcCCcccccchH
Q psy568 755 QPQGHLLLIGVSGAGKTTLSRFVAFMNGLSVFQIRAHNKYT--GADFDEDLRTVLRRSGCKNEKIAFLLDESNVLESGFL 832 (1614)
Q Consensus 755 ~p~gh~LLvG~~GsGKtsl~rlaA~~~~~~~~~i~~~~~~~--~~df~~~lk~~l~~ag~~~~~~v~ll~d~~i~~~~~l 832 (1614)
.|.| +||.||+|||||+++|.+|..++.+++.+..+.-.+ ..+-...++.++..|. .+.|.++++||
T Consensus 216 ~p~g-VLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~k~~Ge~~~~vr~lF~~A~-~~~P~ILfIDE--------- 284 (438)
T PTZ00361 216 PPKG-VILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQKYLGDGPKLVRELFRVAE-ENAPSIVFIDE--------- 284 (438)
T ss_pred CCcE-EEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhhhhcchHHHHHHHHHHHHH-hCCCcEEeHHH---------
Confidence 4444 999999999999999999999999888775432211 0111122455555443 34566666665
Q ss_pred HHHHHhhccCCCCCCCChhhHHHHHHHhHHHHHHcCCCCCCHHHHHHHHHHHH-----hhcceEEEEECCCChhhHHHhh
Q psy568 833 ERMNTLLANGEIPGLFEGDEYTTLMTQCKEGAQREGLMLDSNEELYKWFTQQV-----MKNLHVVFTMNPSSEGLKDRAA 907 (1614)
Q Consensus 833 e~in~lL~~G~v~~Lf~~eE~~~i~~~~~~~~~~~~~~~~s~~~l~~~f~~rv-----~~nlhivl~~sp~~~~~r~~~~ 907 (1614)
|..++....-..-=...+....+ ..|..++ +.++.|+.+.+.. +.
T Consensus 285 --ID~l~~kR~~~~sgg~~e~qr~l---------------------l~LL~~Ldg~~~~~~V~VI~ATNr~-d~------ 334 (438)
T PTZ00361 285 --IDAIGTKRYDATSGGEKEIQRTM---------------------LELLNQLDGFDSRGDVKVIMATNRI-ES------ 334 (438)
T ss_pred --HHHHhccCCCCCCcccHHHHHHH---------------------HHHHHHHhhhcccCCeEEEEecCCh-HH------
Confidence 33443221100000001111111 1112121 2466777766532 22
Q ss_pred hCccccccc---eecccCCCcHHHHHHHHHHhhcccCC
Q psy568 908 TSPALFNRC---VLNWFGDWSDTALYQVAKEFTSKIDL 942 (1614)
Q Consensus 908 ~~PaL~~~~---~i~wf~~W~~eaL~~va~~~l~~~~~ 942 (1614)
.-|++.... ....|...+.++...+...+++...+
T Consensus 335 LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l 372 (438)
T PTZ00361 335 LDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTL 372 (438)
T ss_pred hhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCC
Confidence 245665422 23467888889999999988876654
No 332
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=96.76 E-value=5.8 Score=56.66 Aligned_cols=25 Identities=36% Similarity=0.547 Sum_probs=20.7
Q ss_pred ccCCccEEEeecCCCChHHHHHHHH
Q psy568 754 RQPQGHLLLIGVSGAGKTTLSRFVA 778 (1614)
Q Consensus 754 ~~p~gh~LLvG~~GsGKtsl~rlaA 778 (1614)
....|+.+|+|+.|||||++.-.+-
T Consensus 21 ~f~~g~~~~~G~NGsGKS~~lda~~ 45 (1353)
T TIGR02680 21 WFRDGRLLLRGNNGAGKSKVLELLL 45 (1353)
T ss_pred ecCCCeEEEECCCCCcHHHHHHHHH
Confidence 3457899999999999999888644
No 333
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=96.74 E-value=0.0017 Score=77.81 Aligned_cols=131 Identities=20% Similarity=0.262 Sum_probs=75.8
Q ss_pred cCCCEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCCHHHHHhHhhcccceeecCCcccc---ccccCCceEEEEe
Q psy568 415 EHKPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTPELLLKTFDHYCEYRKTPNGVIL---SPIQLGKWLVLFC 491 (1614)
Q Consensus 415 ~~~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~~~~l~~~~~~~~~~~~~~~g~~~---~p~~~gk~~vlfi 491 (1614)
..+++.|.||+|+|||.++-.+...++...-.+++|+..... +.+.+... +.. ..++. .-. .+..-||++
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~--vh~~l~~~---~~~-~~~l~~va~~l-~~~~~lLcf 133 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLD--VHSRLHQL---RGQ-DDPLPQVADEL-AKESRLLCF 133 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHH--HHHHHHHH---hCC-CccHHHHHHHH-HhcCCEEEE
Confidence 478899999999999999999999887655667777654321 21222110 000 01111 011 122236777
Q ss_pred ccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCC-CCCCCCc--------ccccccccEE
Q psy568 492 DEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTD-PGRKPLS--------HRFLRHVPVI 562 (1614)
Q Consensus 492 Ddin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~-~g~~~l~--------~r~~r~f~~i 562 (1614)
||+....+. .+.-.-.+++.++++ ++.+|+|+|.+.. -..+.+. ..+.++|.++
T Consensus 134 DEF~V~Dia--DAmil~rLf~~l~~~---------------gvvlVaTSN~~P~~Ly~~gl~r~~Flp~I~~l~~~~~vv 196 (362)
T PF03969_consen 134 DEFQVTDIA--DAMILKRLFEALFKR---------------GVVLVATSNRPPEDLYKNGLQRERFLPFIDLLKRRCDVV 196 (362)
T ss_pred eeeeccchh--HHHHHHHHHHHHHHC---------------CCEEEecCCCChHHHcCCcccHHHHHHHHHHHHhceEEE
Confidence 999985443 122222355555543 4678999997641 1112221 2456799999
Q ss_pred EecCCCh
Q psy568 563 YVDYPGE 569 (1614)
Q Consensus 563 ~i~~p~~ 569 (1614)
.++.+.+
T Consensus 197 ~ld~~~D 203 (362)
T PF03969_consen 197 ELDGGVD 203 (362)
T ss_pred EecCCCc
Confidence 9988754
No 334
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.73 E-value=0.006 Score=73.38 Aligned_cols=126 Identities=26% Similarity=0.328 Sum_probs=85.2
Q ss_pred HhccEEEEecCCCCChhhHHHHHHHHHHHhh------------------cCCceEEEeCCCCCCcCcccccccCCCCccc
Q psy568 41 NLNHGLMMVGPSGSGKSTAWKVLLKALERYE------------------GVEGVAHIIDPKAISKEALYGVLDPNTREWT 102 (1614)
Q Consensus 41 ~~r~gVmlvG~~gsGKTt~~~~L~~al~~~~------------------~~~~~~~~inPkais~~eLyG~~d~~t~eW~ 102 (1614)
+..|.+++.||+|+||||....|++.+.--. +....++.+||.......
T Consensus 22 ~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~------------- 88 (325)
T COG0470 22 RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKID------------- 88 (325)
T ss_pred CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCc-------------
Confidence 5778999999999999999999999985211 011234556665542221
Q ss_pred cchHHHHHHHHHhhhcCCC--CCceEEEEccCCChhhhhhhhhhhcCCCccccCCCceeeCCCCceEEEEeccccccCcc
Q psy568 103 DGLFTHILRRIIDNVRGEI--SKRQWIIFDGDVDPEWVENLNSVLDDNKLLTLPNGERLSLPPNIRIMFEVQDLKYATLA 180 (1614)
Q Consensus 103 DGvls~i~r~~~~~~~~~~--~~~~WivfDG~vd~~WiE~lnsvLDdnk~L~L~nGeri~l~~~~~~iFEv~dL~~ASPA 180 (1614)
+.-..+|+......... ...+-|++|. +|..=.+.-|.++ |++ ..-|.++.|++-+.+....-|.
T Consensus 89 --i~~~~vr~~~~~~~~~~~~~~~kviiide-ad~mt~~A~nall---k~l-------Eep~~~~~~il~~n~~~~il~t 155 (325)
T COG0470 89 --IIVEQVRELAEFLSESPLEGGYKVVIIDE-ADKLTEDAANALL---KTL-------EEPPKNTRFILITNDPSKILPT 155 (325)
T ss_pred --chHHHHHHHHHHhccCCCCCCceEEEeCc-HHHHhHHHHHHHH---HHh-------ccCCCCeEEEEEcCChhhccch
Confidence 55667777765432222 4568888886 5554445555555 222 1235567888888889999998
Q ss_pred ccccceeEEecC
Q psy568 181 TVSRCGMIWFSE 192 (1614)
Q Consensus 181 tVSRcgmv~~~~ 192 (1614)
..|||-++.|.+
T Consensus 156 I~SRc~~i~f~~ 167 (325)
T COG0470 156 IRSRCQRIRFKP 167 (325)
T ss_pred hhhcceeeecCC
Confidence 889999999987
No 335
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.72 E-value=0.0026 Score=65.12 Aligned_cols=92 Identities=26% Similarity=0.353 Sum_probs=60.4
Q ss_pred CCccEEEeecCCCChHHHHHHHHHHc--------CCeEEEEEecCCCChhcHHHHHHHHHHH-----------------h
Q psy568 756 PQGHLLLIGVSGAGKTTLSRFVAFMN--------GLSVFQIRAHNKYTGADFDEDLRTVLRR-----------------S 810 (1614)
Q Consensus 756 p~gh~LLvG~~GsGKtsl~rlaA~~~--------~~~~~~i~~~~~~~~~df~~~lk~~l~~-----------------a 810 (1614)
.+++++++|++|+|||++++.++... +.+++.+++....+..+|...+-..+.. .
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA 82 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence 46789999999999999999888765 7888888877665555554443332222 2
Q ss_pred ccCCCcEEEEEcCCccc-ccchHHHHHHhhccCCCCCC
Q psy568 811 GCKNEKIAFLLDESNVL-ESGFLERMNTLLANGEIPGL 847 (1614)
Q Consensus 811 g~~~~~~v~ll~d~~i~-~~~~le~in~lL~~G~v~~L 847 (1614)
.......++++||.|.. +..+++.|-++++...++-+
T Consensus 83 l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~~~~~~vv 120 (131)
T PF13401_consen 83 LDRRRVVLLVIDEADHLFSDEFLEFLRSLLNESNIKVV 120 (131)
T ss_dssp HHHCTEEEEEEETTHHHHTHHHHHHHHHHTCSCBEEEE
T ss_pred HHhcCCeEEEEeChHhcCCHHHHHHHHHHHhCCCCeEE
Confidence 11222368999999888 88888888888775554433
No 336
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.72 E-value=0.009 Score=77.13 Aligned_cols=101 Identities=21% Similarity=0.244 Sum_probs=56.4
Q ss_pred CccE-EEeecCCCChHHHHHHHHHHcCC-------------------------eEEEEEecCCCChhcHHHHHHHHHHHh
Q psy568 757 QGHL-LLIGVSGAGKTTLSRFVAFMNGL-------------------------SVFQIRAHNKYTGADFDEDLRTVLRRS 810 (1614)
Q Consensus 757 ~gh~-LLvG~~GsGKtsl~rlaA~~~~~-------------------------~~~~i~~~~~~~~~df~~~lk~~l~~a 810 (1614)
.+|+ ||.|++|+|||++++.+|...++ ++++++.....+..++++ +...+...
T Consensus 37 i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~~~~~~d~~~i~~~~~~~vd~ir~-ii~~~~~~ 115 (585)
T PRK14950 37 VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIAEGSAVDVIEMDAASHTSVDDARE-IIERVQFR 115 (585)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHhcCCCCeEEEEeccccCCHHHHHH-HHHHHhhC
Confidence 3564 89999999999999999866543 234444333444444443 22222333
Q ss_pred ccCCCcEEEEEcCCcccccchHHHHHHhhccCC-----CCCCCChhhHHHHHHHhH
Q psy568 811 GCKNEKIAFLLDESNVLESGFLERMNTLLANGE-----IPGLFEGDEYTTLMTQCK 861 (1614)
Q Consensus 811 g~~~~~~v~ll~d~~i~~~~~le~in~lL~~G~-----v~~Lf~~eE~~~i~~~~~ 861 (1614)
...+..-++++++.+..+.+- +|.||..-+ +.-+|...+.+.+...++
T Consensus 116 p~~~~~kVvIIDEa~~L~~~a---~naLLk~LEepp~~tv~Il~t~~~~kll~tI~ 168 (585)
T PRK14950 116 PALARYKVYIIDEVHMLSTAA---FNALLKTLEEPPPHAIFILATTEVHKVPATIL 168 (585)
T ss_pred cccCCeEEEEEeChHhCCHHH---HHHHHHHHhcCCCCeEEEEEeCChhhhhHHHH
Confidence 344566788888876655433 444443322 222445555555544443
No 337
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.68 E-value=0.013 Score=75.38 Aligned_cols=128 Identities=20% Similarity=0.245 Sum_probs=76.0
Q ss_pred cc-EEEeecCCCChHHHHHHHHHHcCCe------------------------EEEEEecCCCChhcHHHHHHHHHHHhcc
Q psy568 758 GH-LLLIGVSGAGKTTLSRFVAFMNGLS------------------------VFQIRAHNKYTGADFDEDLRTVLRRSGC 812 (1614)
Q Consensus 758 gh-~LLvG~~GsGKtsl~rlaA~~~~~~------------------------~~~i~~~~~~~~~df~~~lk~~l~~ag~ 812 (1614)
.| .||.||+|+|||++++.+|...+++ +++++-..+.+..+.++ ++..+.....
T Consensus 38 ~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d~~eid~~s~~~v~~ir~-l~~~~~~~p~ 116 (576)
T PRK14965 38 AHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVDVFEIDGASNTGVDDIRE-LRENVKYLPS 116 (576)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCCeeeeeccCccCHHHHHH-HHHHHHhccc
Confidence 35 5899999999999999998775542 44444333445445433 3333333444
Q ss_pred CCCcEEEEEcCCcccccchHHHHHHhhcc--CCCCCCCChhhHHHHHHHhHHHHHHcCCCCCCHHHHHHHHHHHHh
Q psy568 813 KNEKIAFLLDESNVLESGFLERMNTLLAN--GEIPGLFEGDEYTTLMTQCKEGAQREGLMLDSNEELYKWFTQQVM 886 (1614)
Q Consensus 813 ~~~~~v~ll~d~~i~~~~~le~in~lL~~--G~v~~Lf~~eE~~~i~~~~~~~~~~~~~~~~s~~~l~~~f~~rv~ 886 (1614)
.++.-++++++.+..+..-.+.+...|.. +.+.=+|...+...|...++..+..-.....+..++..+....++
T Consensus 117 ~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~ 192 (576)
T PRK14965 117 RSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSRCQRFDFRRIPLQKIVDRLRYIAD 192 (576)
T ss_pred cCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHH
Confidence 55667888898766554333233333322 445555666777777777776665444333456666666555444
No 338
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=96.68 E-value=0.005 Score=74.63 Aligned_cols=72 Identities=28% Similarity=0.424 Sum_probs=47.9
Q ss_pred CccEEEeecCCCChHHHHHHHHHHcCCeEEEEEecC----CCChhcHHHHHHHHHHHhcc---CCCcEEEEEcCCcccc
Q psy568 757 QGHLLLIGVSGAGKTTLSRFVAFMNGLSVFQIRAHN----KYTGADFDEDLRTVLRRSGC---KNEKIAFLLDESNVLE 828 (1614)
Q Consensus 757 ~gh~LLvG~~GsGKtsl~rlaA~~~~~~~~~i~~~~----~~~~~df~~~lk~~l~~ag~---~~~~~v~ll~d~~i~~ 828 (1614)
.+|+||+||+|+|||+++|.+|...+.++..++.+. .|...+-.+-+..+++.+.. ...+.++++|+-+-..
T Consensus 116 ~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~ 194 (413)
T TIGR00382 116 KSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKIS 194 (413)
T ss_pred CceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhccccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhc
Confidence 579999999999999999999999998887766442 23333333334444443321 2345577778766433
No 339
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=96.68 E-value=0.01 Score=76.14 Aligned_cols=79 Identities=23% Similarity=0.371 Sum_probs=47.0
Q ss_pred ccE-EEeecCCCChHHHHHHHHHHcCCe---------------------EEEEEecCCCChhcHHHHHHHHHHHhccCCC
Q psy568 758 GHL-LLIGVSGAGKTTLSRFVAFMNGLS---------------------VFQIRAHNKYTGADFDEDLRTVLRRSGCKNE 815 (1614)
Q Consensus 758 gh~-LLvG~~GsGKtsl~rlaA~~~~~~---------------------~~~i~~~~~~~~~df~~~lk~~l~~ag~~~~ 815 (1614)
.|+ ||.||+|+|||+++|.+|....+. ++++......+..+.++ +...+......++
T Consensus 40 ~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvieidaasn~~vd~IRe-Lie~~~~~P~~g~ 118 (725)
T PRK07133 40 SHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIEMDAASNNGVDEIRE-LIENVKNLPTQSK 118 (725)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEEEeccccCCHHHHHH-HHHHHHhchhcCC
Confidence 455 899999999999999998775542 12222111122333332 2333333445567
Q ss_pred cEEEEEcCCcccccchHHHHHHhhc
Q psy568 816 KIAFLLDESNVLESGFLERMNTLLA 840 (1614)
Q Consensus 816 ~~v~ll~d~~i~~~~~le~in~lL~ 840 (1614)
.-|+++++.+..... ..|.||.
T Consensus 119 ~KV~IIDEa~~LT~~---A~NALLK 140 (725)
T PRK07133 119 YKIYIIDEVHMLSKS---AFNALLK 140 (725)
T ss_pred CEEEEEEChhhCCHH---HHHHHHH
Confidence 778899987766543 4455553
No 340
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=96.67 E-value=5 Score=57.51 Aligned_cols=17 Identities=18% Similarity=0.259 Sum_probs=10.4
Q ss_pred CCcccccCCchHHHHHH
Q psy568 1437 NRYPLIIDPSGQATEFI 1453 (1614)
Q Consensus 1437 ~r~PLliDPq~qa~~wl 1453 (1614)
....+++|-...|..+|
T Consensus 548 ~l~~ivv~~~~~a~~~i 564 (1164)
T TIGR02169 548 RLNNVVVEDDAVAKEAI 564 (1164)
T ss_pred hhCCEEECCHHHHHHHH
Confidence 34557888766665544
No 341
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=96.67 E-value=0.0088 Score=71.04 Aligned_cols=140 Identities=16% Similarity=0.178 Sum_probs=91.0
Q ss_pred HHHHhccEEEEecCCCCChhhHHHHHHHHHHHhh---cCC---------------ceEEEeCCCCCCcCcccccccCCCC
Q psy568 38 QISNLNHGLMMVGPSGSGKSTAWKVLLKALERYE---GVE---------------GVAHIIDPKAISKEALYGVLDPNTR 99 (1614)
Q Consensus 38 e~~~~r~gVmlvG~~gsGKTt~~~~L~~al~~~~---~~~---------------~~~~~inPkais~~eLyG~~d~~t~ 99 (1614)
+.-+..|+.++.||+|+|||++.+.+++++.--. +.+ ...+.+.|.-
T Consensus 17 ~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~--------------- 81 (328)
T PRK05707 17 GRGRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEE--------------- 81 (328)
T ss_pred HCCCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccC---------------
Confidence 3366789999999999999999999999984210 000 1133344410
Q ss_pred ccccchHHHHHHHHHhhhc--CCCCCceEEEEccCCChhhhhhhhhhhcCCCccccCCCceeeCCCCceEEEEecccccc
Q psy568 100 EWTDGLFTHILRRIIDNVR--GEISKRQWIIFDGDVDPEWVENLNSVLDDNKLLTLPNGERLSLPPNIRIMFEVQDLKYA 177 (1614)
Q Consensus 100 eW~DGvls~i~r~~~~~~~--~~~~~~~WivfDG~vd~~WiE~lnsvLDdnk~L~L~nGeri~l~~~~~~iFEv~dL~~A 177 (1614)
....+=.--+|+...... .....++.+|+|. +|..=.+.-|++| |+|-= -|+++.||+-+++....
T Consensus 82 -~~~~i~id~iR~l~~~~~~~~~~~~~kv~iI~~-a~~m~~~aaNaLL---K~LEE-------Pp~~~~fiL~t~~~~~l 149 (328)
T PRK05707 82 -ADKTIKVDQVRELVSFVVQTAQLGGRKVVLIEP-AEAMNRNAANALL---KSLEE-------PSGDTVLLLISHQPSRL 149 (328)
T ss_pred -CCCCCCHHHHHHHHHHHhhccccCCCeEEEECC-hhhCCHHHHHHHH---HHHhC-------CCCCeEEEEEECChhhC
Confidence 111222345565543222 1223577888865 6666667778887 33322 34678899999999999
Q ss_pred CccccccceeEEecCcccchHHHHHHHHHh
Q psy568 178 TLATVSRCGMIWFSEDVLSTEMIFENYLSR 207 (1614)
Q Consensus 178 SPAtVSRcgmv~~~~~~l~~~~~~~~~~~~ 207 (1614)
-|..+|||-.+.|.+-. ..-+..|+..
T Consensus 150 l~TI~SRc~~~~~~~~~---~~~~~~~L~~ 176 (328)
T PRK05707 150 LPTIKSRCQQQACPLPS---NEESLQWLQQ 176 (328)
T ss_pred cHHHHhhceeeeCCCcC---HHHHHHHHHH
Confidence 88889999999997653 3355677754
No 342
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.66 E-value=0.026 Score=65.81 Aligned_cols=88 Identities=25% Similarity=0.353 Sum_probs=54.9
Q ss_pred hccCCccEEEeecCCCChHHHHHHHHHHcCC-eEEEEE-ecCCCChhcHH--------------------HHHHHHHHHh
Q psy568 753 FRQPQGHLLLIGVSGAGKTTLSRFVAFMNGL-SVFQIR-AHNKYTGADFD--------------------EDLRTVLRRS 810 (1614)
Q Consensus 753 l~~p~gh~LLvG~~GsGKtsl~rlaA~~~~~-~~~~i~-~~~~~~~~df~--------------------~~lk~~l~~a 810 (1614)
+..+.|.++|+|++|+|||++++.++..... .+.... .....+..++. ..+...+...
T Consensus 39 ~~~~~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~ 118 (269)
T TIGR03015 39 LSQREGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQ 118 (269)
T ss_pred HhcCCCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHH
Confidence 4455667899999999999999988876542 222211 11122222221 1222223333
Q ss_pred ccCCCcEEEEEcCCcccccchHHHHHHhhc
Q psy568 811 GCKNEKIAFLLDESNVLESGFLERMNTLLA 840 (1614)
Q Consensus 811 g~~~~~~v~ll~d~~i~~~~~le~in~lL~ 840 (1614)
...+++.++++||.+..++..++.+..+.+
T Consensus 119 ~~~~~~~vliiDe~~~l~~~~~~~l~~l~~ 148 (269)
T TIGR03015 119 FAAGKRALLVVDEAQNLTPELLEELRMLSN 148 (269)
T ss_pred HhCCCCeEEEEECcccCCHHHHHHHHHHhC
Confidence 346778899999998888777887776543
No 343
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=96.66 E-value=0.013 Score=71.47 Aligned_cols=24 Identities=33% Similarity=0.480 Sum_probs=20.4
Q ss_pred cEEEeecCCCChHHHHHHHHHHcC
Q psy568 759 HLLLIGVSGAGKTTLSRFVAFMNG 782 (1614)
Q Consensus 759 h~LLvG~~GsGKtsl~rlaA~~~~ 782 (1614)
..||.||+|+|||++++.+|....
T Consensus 38 ~~Ll~G~~G~GKt~~a~~la~~l~ 61 (355)
T TIGR02397 38 AYLFSGPRGTGKTSIARIFAKALN 61 (355)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 378999999999999998886643
No 344
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=96.66 E-value=3.3 Score=54.69 Aligned_cols=46 Identities=20% Similarity=0.211 Sum_probs=21.1
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHhhhhhHHHhhcCCCCcHHHHHHHHHHHHhc
Q psy568 1103 RVFVMEDLAQVEPAVMDAQQAVKEIKKQQLVELRSMANPPSVVKLALESICLLL 1156 (1614)
Q Consensus 1103 k~~~~~~l~~a~p~l~~A~~al~~l~~~dl~Eirs~~~PP~~V~~v~eavc~Ll 1156 (1614)
++++++++......+.++++++..+ -+=.-|-..+..+++.+...+
T Consensus 264 r~~Le~ei~~le~e~~e~~~~l~~l--------~~~~~p~~l~~~ll~~~~~q~ 309 (650)
T TIGR03185 264 REQLERQLKEIEAARKANRAQLREL--------AADPLPLLLIPNLLDSTKAQL 309 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------hcccCCHhhhHHHHHHHHHHH
Confidence 3444444444444444444433333 222235555666666655544
No 345
>PRK11637 AmiB activator; Provisional
Probab=96.64 E-value=3.1 Score=51.94 Aligned_cols=12 Identities=17% Similarity=0.360 Sum_probs=7.7
Q ss_pred HcCCcEEEeecc
Q psy568 1481 RFGNPLLVQDVE 1492 (1614)
Q Consensus 1481 ~~G~~lli~dve 1492 (1614)
.+|..|+|+.-+
T Consensus 358 ~~G~~vii~hg~ 369 (428)
T PRK11637 358 GYGLVVVVEHGK 369 (428)
T ss_pred CcccEEEEEeCC
Confidence 347777777653
No 346
>KOG0477|consensus
Probab=96.63 E-value=0.001 Score=80.05 Aligned_cols=132 Identities=21% Similarity=0.229 Sum_probs=69.2
Q ss_pred CCEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCCHHHHHhHhhc---ccceeecCCccccccccCCceEEEEecc
Q psy568 417 KPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTPELLLKTFDH---YCEYRKTPNGVILSPIQLGKWLVLFCDE 493 (1614)
Q Consensus 417 ~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~~~~l~~~~~~---~~~~~~~~~g~~~~p~~~gk~~vlfiDd 493 (1614)
.+|||+|.||||||.+++...+.. ...+++.--. .++--+...... .-+|.- ..|.++-+ .+.|..|||
T Consensus 483 invLL~GDPGTaKSQFLKY~eK~s-~RAV~tTGqG--ASavGLTa~v~KdPvtrEWTL-EaGALVLA----DkGvClIDE 554 (854)
T KOG0477|consen 483 INVLLLGDPGTAKSQFLKYAEKTS-PRAVFTTGQG--ASAVGLTAYVRKDPVTREWTL-EAGALVLA----DKGVCLIDE 554 (854)
T ss_pred eeEEEecCCCccHHHHHHHHHhcC-cceeEeccCC--ccccceeEEEeeCCccceeee-ccCeEEEc----cCceEEeeh
Confidence 589999999999999987666533 2222211110 010000000000 001211 13544443 235566799
Q ss_pred CCC-CCccccCcccHHHHHHHHHHcCceeeCCCCceEe-ecCeEEEEeecCCCCCCCC----------CCcccccccccE
Q psy568 494 INL-PDMDKYATQRVISFLRQLIEQRGFYRPADKQWVS-LERIQCVGACNPPTDPGRK----------PLSHRFLRHVPV 561 (1614)
Q Consensus 494 in~-p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~-~~~~~~iaa~n~~~~~g~~----------~l~~r~~r~f~~ 561 (1614)
++. -.-| .-++.| .|+...+-..+-+-... .....+|||.||-+ ||. .|+...++||-+
T Consensus 555 FDKMndqD---RtSIHE----AMEQQSISISKAGIVtsLqArctvIAAanPig--GRY~~s~tFaqNV~ltePIlSRFDi 625 (854)
T KOG0477|consen 555 FDKMNDQD---RTSIHE----AMEQQSISISKAGIVTSLQARCTVIAAANPIG--GRYNPSLTFAQNVDLTEPILSRFDI 625 (854)
T ss_pred hhhhcccc---cchHHH----HHHhcchhhhhhhHHHHHHhhhhhheecCCCC--CccCCccchhhccccccchhhhcce
Confidence 985 2222 122333 34444443332222222 24678999999975 554 678888999998
Q ss_pred EEec
Q psy568 562 IYVD 565 (1614)
Q Consensus 562 i~i~ 565 (1614)
+++-
T Consensus 626 LcVv 629 (854)
T KOG0477|consen 626 LCVV 629 (854)
T ss_pred eeee
Confidence 8763
No 347
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=96.62 E-value=0.0045 Score=73.43 Aligned_cols=145 Identities=21% Similarity=0.263 Sum_probs=87.0
Q ss_pred HHHHHHHHHHhccEEEEecCCCCChhhHHHHHHHHHHHhhcCCceEEE--------------------------------
Q psy568 32 KVLQLYQISNLNHGLMMVGPSGSGKSTAWKVLLKALERYEGVEGVAHI-------------------------------- 79 (1614)
Q Consensus 32 K~~qL~e~~~~r~gVmlvG~~gsGKTt~~~~L~~al~~~~~~~~~~~~-------------------------------- 79 (1614)
..+.+--.-....||+|.|++|+||||+.+++++.+....+....-+-
T Consensus 14 ~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~ 93 (337)
T TIGR02030 14 LALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEMMCEEVRIRVDSQEPLSIIKKPVPV 93 (337)
T ss_pred HHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccccChHHhhhhhcccccccccCCCCc
Confidence 333333332335789999999999999999999988432211100000
Q ss_pred e-CCCCCCcCcccccccCC----CCc--cccchHHHHHHHHHhhhcCCCCCceEEEEcc--CCChhhhhhhhhhhcCCCc
Q psy568 80 I-DPKAISKEALYGVLDPN----TRE--WTDGLFTHILRRIIDNVRGEISKRQWIIFDG--DVDPEWVENLNSVLDDNKL 150 (1614)
Q Consensus 80 i-nPkais~~eLyG~~d~~----t~e--W~DGvls~i~r~~~~~~~~~~~~~~WivfDG--~vd~~WiE~lnsvLDdnk~ 150 (1614)
. =|-.++-+.|+|..|.. +++ ++.|++... ....+++|- ..++.-...|-.+|+++..
T Consensus 94 ~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A-------------~~GvL~lDEi~~L~~~~Q~~Ll~~l~~g~~ 160 (337)
T TIGR02030 94 VDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARA-------------NRGILYIDEVNLLEDHLVDVLLDVAASGWN 160 (337)
T ss_pred CCCCCCCcccceecchhHhhHhhcCCEEeecCcceec-------------cCCEEEecChHhCCHHHHHHHHHHHHhCCe
Confidence 0 23445666888887621 233 355543311 135777884 5666666666677877654
Q ss_pred cccCCCceeeCCCCceEEEEecccc-ccCccccccceeEE
Q psy568 151 LTLPNGERLSLPPNIRIMFEVQDLK-YATLATVSRCGMIW 189 (1614)
Q Consensus 151 L~L~nGeri~l~~~~~~iFEv~dL~-~ASPAtVSRcgmv~ 189 (1614)
-.-..|...+.+..+-++....-.. ...|+...|++|..
T Consensus 161 ~v~r~G~~~~~~~r~iviat~np~eg~l~~~LldRf~l~i 200 (337)
T TIGR02030 161 VVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGLHA 200 (337)
T ss_pred EEEECCEEEEcCCCEEEEeccccccCCCCHHHHhhcceEE
Confidence 4445677777776665555543222 46788999999754
No 348
>CHL00176 ftsH cell division protein; Validated
Probab=96.61 E-value=0.0046 Score=79.56 Aligned_cols=70 Identities=24% Similarity=0.402 Sum_probs=48.4
Q ss_pred ccCCccEEEeecCCCChHHHHHHHHHHcCCeEEEEEecCCCCh--hcHHHHHHHHHHHhccCCCcEEEEEcCCc
Q psy568 754 RQPQGHLLLIGVSGAGKTTLSRFVAFMNGLSVFQIRAHNKYTG--ADFDEDLRTVLRRSGCKNEKIAFLLDESN 825 (1614)
Q Consensus 754 ~~p~gh~LLvG~~GsGKtsl~rlaA~~~~~~~~~i~~~~~~~~--~df~~~lk~~l~~ag~~~~~~v~ll~d~~ 825 (1614)
..|+| +||+||+|+|||+++|.+|.-++.+++.++.+.-... ..-...++.++..+ ..+.|+++++||-+
T Consensus 214 ~~p~g-VLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~~g~~~~~vr~lF~~A-~~~~P~ILfIDEID 285 (638)
T CHL00176 214 KIPKG-VLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMFVGVGAARVRDLFKKA-KENSPCIVFIDEID 285 (638)
T ss_pred CCCce-EEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHhhhhhHHHHHHHHHHH-hcCCCcEEEEecch
Confidence 34555 9999999999999999999999999998864421100 00012345555555 35678889998853
No 349
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=96.60 E-value=0.023 Score=66.87 Aligned_cols=152 Identities=20% Similarity=0.245 Sum_probs=98.1
Q ss_pred HHHHHHHHH----HHHHhccEEEEecCCCCChhhHHHHHHHHHHHhhc-CC---------------ceEEEe--CCCCCC
Q psy568 29 WMEKVLQLY----QISNLNHGLMMVGPSGSGKSTAWKVLLKALERYEG-VE---------------GVAHII--DPKAIS 86 (1614)
Q Consensus 29 ~~~K~~qL~----e~~~~r~gVmlvG~~gsGKTt~~~~L~~al~~~~~-~~---------------~~~~~i--nPkais 86 (1614)
|...+.+.. +.=++.|+.++.||+|+||+++...+++++- +.+ .. ...+++ .|..
T Consensus 8 W~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~Ll-C~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~-- 84 (319)
T PRK08769 8 WQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVL-ASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNR-- 84 (319)
T ss_pred cHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHh-CCCCCCCCcchHHHHHhcCCCCCEEEEecCCCc--
Confidence 555444444 4447889999999999999999999999883 111 00 012333 2210
Q ss_pred cCcccccccCCCCccccchHHHHHHHHHhhhc--CCCCCceEEEEccCCChhhhhhhhhhhcCCCccccCCCceeeCCCC
Q psy568 87 KEALYGVLDPNTREWTDGLFTHILRRIIDNVR--GEISKRQWIIFDGDVDPEWVENLNSVLDDNKLLTLPNGERLSLPPN 164 (1614)
Q Consensus 87 ~~eLyG~~d~~t~eW~DGvls~i~r~~~~~~~--~~~~~~~WivfDG~vd~~WiE~lnsvLDdnk~L~L~nGeri~l~~~ 164 (1614)
-|. . =+-.|--.-+|++.+... .....++.+|+| ++|..=.+.-|.+| |+|-= -|++
T Consensus 85 ----~~~-k-----~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~-~ae~m~~~AaNaLL---KtLEE-------Pp~~ 143 (319)
T PRK08769 85 ----TGD-K-----LRTEIVIEQVREISQKLALTPQYGIAQVVIVD-PADAINRAACNALL---KTLEE-------PSPG 143 (319)
T ss_pred ----ccc-c-----ccccccHHHHHHHHHHHhhCcccCCcEEEEec-cHhhhCHHHHHHHH---HHhhC-------CCCC
Confidence 000 0 001244556777654322 122357899999 47777778888888 54432 3557
Q ss_pred ceEEEEeccccccCccccccceeEEecCcccchHHHHHHHHHh
Q psy568 165 IRIMFEVQDLKYATLATVSRCGMIWFSEDVLSTEMIFENYLSR 207 (1614)
Q Consensus 165 ~~~iFEv~dL~~ASPAtVSRcgmv~~~~~~l~~~~~~~~~~~~ 207 (1614)
+.||+-+++....-|..+|||-+|.+.+-. ..-+..|+..
T Consensus 144 ~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~---~~~~~~~L~~ 183 (319)
T PRK08769 144 RYLWLISAQPARLPATIRSRCQRLEFKLPP---AHEALAWLLA 183 (319)
T ss_pred CeEEEEECChhhCchHHHhhheEeeCCCcC---HHHHHHHHHH
Confidence 788999999999988889999999998643 2355678754
No 350
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=96.59 E-value=0.024 Score=73.34 Aligned_cols=157 Identities=17% Similarity=0.295 Sum_probs=91.5
Q ss_pred CccEEEeecCCCChHHHHHHHHHHc----------CCeEEEEEecCC-CChhcHH------------HHHHHHHHHhccC
Q psy568 757 QGHLLLIGVSGAGKTTLSRFVAFMN----------GLSVFQIRAHNK-YTGADFD------------EDLRTVLRRSGCK 813 (1614)
Q Consensus 757 ~gh~LLvG~~GsGKtsl~rlaA~~~----------~~~~~~i~~~~~-~~~~df~------------~~lk~~l~~ag~~ 813 (1614)
..|++|+|++|+||||++|.++... +..++.++.... ++..+.. ...+..+...|..
T Consensus 175 ~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~ 254 (615)
T TIGR02903 175 PQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVP 254 (615)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCC
Confidence 4579999999999999999987654 344666654321 1111110 1112222333321
Q ss_pred C---------CcEEEEEcCCcccccchHHHHHHhhccCCCC---CCCChhhHHHHHHHhHHHHHHcCCCCCCHHHHHHHH
Q psy568 814 N---------EKIAFLLDESNVLESGFLERMNTLLANGEIP---GLFEGDEYTTLMTQCKEGAQREGLMLDSNEELYKWF 881 (1614)
Q Consensus 814 ~---------~~~v~ll~d~~i~~~~~le~in~lL~~G~v~---~Lf~~eE~~~i~~~~~~~~~~~~~~~~s~~~l~~~f 881 (1614)
+ .+.++++|+.+-.++..-+.+-.+|..|.+. +-|+.+ ....++|+
T Consensus 255 ~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~----------------------~~~~~~~i 312 (615)
T TIGR02903 255 EPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPD----------------------DPNVPKYI 312 (615)
T ss_pred chhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccC----------------------Ccccchhh
Confidence 1 2347888887777777777777777766532 111111 11222222
Q ss_pred HHHH--hhcceEEEEECCCChhhHHHhhhCccccccceecccCCCcHHHHHHHHHHhhcc
Q psy568 882 TQQV--MKNLHVVFTMNPSSEGLKDRAATSPALFNRCVLNWFGDWSDTALYQVAKEFTSK 939 (1614)
Q Consensus 882 ~~rv--~~nlhivl~~sp~~~~~r~~~~~~PaL~~~~~i~wf~~W~~eaL~~va~~~l~~ 939 (1614)
..-. ....+++++.+...+. -...|+|.++|....|.+.+.+.+..++.+++..
T Consensus 313 k~~~~~~~~~~~VLI~aTt~~~----~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~ 368 (615)
T TIGR02903 313 KKLFEEGAPADFVLIGATTRDP----EEINPALRSRCAEVFFEPLTPEDIALIVLNAAEK 368 (615)
T ss_pred hhhcccCccceEEEEEeccccc----cccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHH
Confidence 1111 1245677766544321 1346889999999999999999999999887654
No 351
>KOG0738|consensus
Probab=96.58 E-value=0.0025 Score=73.08 Aligned_cols=69 Identities=25% Similarity=0.390 Sum_probs=48.6
Q ss_pred hccCCccEEEeecCCCChHHHHHHHHHHcCCeEEEEEecCCCChhcHHHH---HHHHHHHhccCCCcEEEEEcC
Q psy568 753 FRQPQGHLLLIGVSGAGKTTLSRFVAFMNGLSVFQIRAHNKYTGADFDED---LRTVLRRSGCKNEKIAFLLDE 823 (1614)
Q Consensus 753 l~~p~gh~LLvG~~GsGKtsl~rlaA~~~~~~~~~i~~~~~~~~~df~~~---lk~~l~~ag~~~~~~v~ll~d 823 (1614)
++.|.-.+||+||||+|||-|+|.+|.-||.+||.+.- ..-.+-|+++ |-++|-......-|.++++|+
T Consensus 241 irrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSs--stltSKwRGeSEKlvRlLFemARfyAPStIFiDE 312 (491)
T KOG0738|consen 241 IRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSS--STLTSKWRGESEKLVRLLFEMARFYAPSTIFIDE 312 (491)
T ss_pred cccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEech--hhhhhhhccchHHHHHHHHHHHHHhCCceeehhh
Confidence 36687679999999999999999999999999997753 2224556654 444444444444566666544
No 352
>PRK09183 transposase/IS protein; Provisional
Probab=96.58 E-value=0.0019 Score=74.33 Aligned_cols=37 Identities=24% Similarity=0.355 Sum_probs=28.1
Q ss_pred HhcCCCEEEecCCCCchHHHHHHHHhcC--CCCceEEEE
Q psy568 413 LAEHKPLVLCGPPGSGKTMTLLSALRAL--PDMEVVSLN 449 (1614)
Q Consensus 413 l~~~~~vLL~Gp~GtGKT~lv~~~~~~l--~~~~~~~i~ 449 (1614)
+..+.+++|+||||||||+++..+.... .+..+..++
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~ 137 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTT 137 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 6678999999999999999998876432 344555444
No 353
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=96.57 E-value=0.012 Score=73.07 Aligned_cols=126 Identities=17% Similarity=0.209 Sum_probs=65.8
Q ss_pred EEEeecCCCChHHHHHHHHHHcCC-------------------------eEEEEEecCCCChhcHHHHHHHHHHHhccCC
Q psy568 760 LLLIGVSGAGKTTLSRFVAFMNGL-------------------------SVFQIRAHNKYTGADFDEDLRTVLRRSGCKN 814 (1614)
Q Consensus 760 ~LLvG~~GsGKtsl~rlaA~~~~~-------------------------~~~~i~~~~~~~~~df~~~lk~~l~~ag~~~ 814 (1614)
+||.|++|+|||++++.+|....+ ++..++-....+..+.++ +...+......+
T Consensus 42 ~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d~~~i~g~~~~gid~ir~-i~~~l~~~~~~~ 120 (451)
T PRK06305 42 YLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLDVLEIDGASHRGIEDIRQ-INETVLFTPSKS 120 (451)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCceEEeeccccCCHHHHHH-HHHHHHhhhhcC
Confidence 789999999999999999876543 233332112223333332 222222222345
Q ss_pred CcEEEEEcCCcccccchHHHHHHhhcc--CCCCCCCChhhHHHHHHHhHHHHHHcCCCCCCHHHHHHHHHHHHh
Q psy568 815 EKIAFLLDESNVLESGFLERMNTLLAN--GEIPGLFEGDEYTTLMTQCKEGAQREGLMLDSNEELYKWFTQQVM 886 (1614)
Q Consensus 815 ~~~v~ll~d~~i~~~~~le~in~lL~~--G~v~~Lf~~eE~~~i~~~~~~~~~~~~~~~~s~~~l~~~f~~rv~ 886 (1614)
..-++++++.+-...+..+.+-..|.. +.+.-+|..++...|+..++..+..-.....+.+++..+..+.++
T Consensus 121 ~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~ 194 (451)
T PRK06305 121 RYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAK 194 (451)
T ss_pred CCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHH
Confidence 667788888655444333333333333 344445555666666655554443333323355555555554443
No 354
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=96.55 E-value=2 Score=48.74 Aligned_cols=119 Identities=13% Similarity=0.216 Sum_probs=88.4
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q psy568 1229 ISYADMLKKVEPLRLELKSLEVQASENKAKGEETKDLITQLEKSIASYKDEYAQLIAQATAIKTDLDNVQAKFYEYAQLI 1308 (1614)
Q Consensus 1229 ~~y~~v~~~v~P~~~~l~~~~~~~~~~~~~l~~~~~~l~~~e~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 1308 (1614)
-+|..+...+.-....|..++..+..++.++.+++..|..+...+..+.....+.......++..+..++.++.+.
T Consensus 113 ~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkea---- 188 (237)
T PF00261_consen 113 RKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEA---- 188 (237)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHH----
Confidence 3566666777777777888888888888888888888888877777777777666666666666666666555443
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhch
Q psy568 1309 AQATAIKTDLDNVQAKVERSMALLKSLGIERERWEATSETFRSQMATII 1357 (1614)
Q Consensus 1309 ~~~~~l~~~~~~~~~rl~~a~~l~~~L~~e~~rW~~~~~~~~~~~~~l~ 1357 (1614)
+...+..+.+..+.++-++.|..+-..|+.....++..+....
T Consensus 189 ------E~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld~~l 231 (237)
T PF00261_consen 189 ------ENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELDQTL 231 (237)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566677778888888888999999999999888888876544
No 355
>KOG0990|consensus
Probab=96.55 E-value=0.0021 Score=72.29 Aligned_cols=137 Identities=19% Similarity=0.249 Sum_probs=87.7
Q ss_pred CCEEEecCCCCchHHHHHHHHhcCCC-Cc----eEEEEcccCCCHHHHHhHhhcccceeecCCccccccccCCceEEEEe
Q psy568 417 KPLVLCGPPGSGKTMTLLSALRALPD-ME----VVSLNFSSATTPELLLKTFDHYCEYRKTPNGVILSPIQLGKWLVLFC 491 (1614)
Q Consensus 417 ~~vLL~Gp~GtGKT~lv~~~~~~l~~-~~----~~~i~~s~~t~~~~l~~~~~~~~~~~~~~~g~~~~p~~~gk~~vlfi 491 (1614)
.|.|++||||+|||+.+...+..+.+ ++ +..+|.|+.-...-++..+...-.-+ +........+-++ +.+
T Consensus 63 Ph~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaSd~rgid~vr~qi~~fast~----~~~~fst~~~fKl-vIL 137 (360)
T KOG0990|consen 63 PHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNASDDRGIDPVRQQIHLFASTQ----QPTTYSTHAAFKL-VIL 137 (360)
T ss_pred CcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhccCccCCcchHHHHHHHHhhc----cceeccccCceeE-EEe
Confidence 48999999999999999888887755 22 33566676665554544443211111 1111110012223 335
Q ss_pred ccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCCCcccccccccEEEecCCChhH
Q psy568 492 DEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLRHVPVIYVDYPGETS 571 (1614)
Q Consensus 492 Ddin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r~f~~i~i~~p~~~~ 571 (1614)
||.+. -+..+...||+.++. |. .+++|+.-+|++. .+.+...+||..+.+.+.+...
T Consensus 138 DEADa------MT~~AQnALRRviek---~t---------~n~rF~ii~n~~~-----ki~pa~qsRctrfrf~pl~~~~ 194 (360)
T KOG0990|consen 138 DEADA------MTRDAQNALRRVIEK---YT---------ANTRFATISNPPQ-----KIHPAQQSRCTRFRFAPLTMAQ 194 (360)
T ss_pred cchhH------hhHHHHHHHHHHHHH---hc---------cceEEEEeccChh-----hcCchhhcccccCCCCCCChhh
Confidence 99998 455567788887764 22 3688888888885 6788888899888888888777
Q ss_pred HHHHHHHHHH
Q psy568 572 LKQIYGTFSR 581 (1614)
Q Consensus 572 l~~I~~~~~~ 581 (1614)
...+.+.+..
T Consensus 195 ~~~r~shi~e 204 (360)
T KOG0990|consen 195 QTERQSHIRE 204 (360)
T ss_pred hhhHHHHHHh
Confidence 7776555443
No 356
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.54 E-value=0.018 Score=59.19 Aligned_cols=37 Identities=35% Similarity=0.471 Sum_probs=30.5
Q ss_pred CccEEEeecCCCChHHHHHHHHHHcCCe---EEEEEecCC
Q psy568 757 QGHLLLIGVSGAGKTTLSRFVAFMNGLS---VFQIRAHNK 793 (1614)
Q Consensus 757 ~gh~LLvG~~GsGKtsl~rlaA~~~~~~---~~~i~~~~~ 793 (1614)
+++++|+||+|||||++++.+|...+.. ++.+.....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~ 41 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDI 41 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEc
Confidence 5689999999999999999888887765 777765543
No 357
>PF14516 AAA_35: AAA-like domain
Probab=96.54 E-value=0.016 Score=69.45 Aligned_cols=162 Identities=19% Similarity=0.194 Sum_probs=94.6
Q ss_pred HHHHHHhcCCCEEEecCCCCchHHHHHHHHhcC--CCCceEEEEcccC-----CCHHHHHhHh----hcccceee-----
Q psy568 408 LLYTWLAEHKPLVLCGPPGSGKTMTLLSALRAL--PDMEVVSLNFSSA-----TTPELLLKTF----DHYCEYRK----- 471 (1614)
Q Consensus 408 ll~~~l~~~~~vLL~Gp~GtGKT~lv~~~~~~l--~~~~~~~i~~s~~-----t~~~~l~~~~----~~~~~~~~----- 471 (1614)
+.+.+.+.|..+.+.||..+|||+++..+++.+ .++.++.++|... ++.+.+.+.+ ...+....
T Consensus 23 ~~~~i~~~G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~ 102 (331)
T PF14516_consen 23 CYQEIVQPGSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEY 102 (331)
T ss_pred HHHHHhcCCCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHH
Confidence 344556679999999999999999998888765 3677888888752 2233322222 11111000
Q ss_pred c--CCc-----------cccccccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEE
Q psy568 472 T--PNG-----------VILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVG 538 (1614)
Q Consensus 472 ~--~~g-----------~~~~p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~ia 538 (1614)
+ ..| .++. ...+++|+||||++..-....-+...+.+||.+.+.+.. ...| ..+++|.
T Consensus 103 w~~~~~~~~~~~~~~~~~ll~--~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~----~~~~---~~L~li~ 173 (331)
T PF14516_consen 103 WDEEIGSKISCTEYFEEYLLK--QIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKN----NPIW---QKLRLIL 173 (331)
T ss_pred HHHhcCChhhHHHHHHHHHHh--cCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhccc----Cccc---ceEEEEE
Confidence 0 001 0111 124679999999997544322345678899999875441 1122 2355555
Q ss_pred eecCCCCCCCCCCcccccccccEEEecCCChhHHHHHHHHH
Q psy568 539 ACNPPTDPGRKPLSHRFLRHVPVIYVDYPGETSLKQIYGTF 579 (1614)
Q Consensus 539 a~n~~~~~g~~~l~~r~~r~f~~i~i~~p~~~~l~~I~~~~ 579 (1614)
+...+.+ ........-.+....+.++..+.+++...++.+
T Consensus 174 ~~~t~~~-~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~ 213 (331)
T PF14516_consen 174 AGSTEDY-IILDINQSPFNIGQPIELPDFTPEEVQELAQRY 213 (331)
T ss_pred ecCcccc-cccCCCCCCcccccceeCCCCCHHHHHHHHHhh
Confidence 5443221 111222222255667889999999988876554
No 358
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.53 E-value=0.028 Score=66.84 Aligned_cols=152 Identities=19% Similarity=0.239 Sum_probs=97.7
Q ss_pred HhccEEEEecCCCCChhhHHHHHHHHHHHhh----cCC---------------ceEEEeCCCCCCcCcccccccC----C
Q psy568 41 NLNHGLMMVGPSGSGKSTAWKVLLKALERYE----GVE---------------GVAHIIDPKAISKEALYGVLDP----N 97 (1614)
Q Consensus 41 ~~r~gVmlvG~~gsGKTt~~~~L~~al~~~~----~~~---------------~~~~~inPkais~~eLyG~~d~----~ 97 (1614)
+..|+.++.||+|+||+++.+.+++++.--. +.+ ...+.+.|..... ...|..|. +
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~-~~~~~~~~~~~~~ 97 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAA-EAPGAADEAKEAD 97 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccc-cccccccccccch
Confidence 6779999999999999999999999984311 111 1245666653211 22222111 0
Q ss_pred ---CCccc----cchHHHHHHHHHhhhc--CCCCCceEEEEccCCChhhhhhhhhhhcCCCccccCCCceeeCCCCceEE
Q psy568 98 ---TREWT----DGLFTHILRRIIDNVR--GEISKRQWIIFDGDVDPEWVENLNSVLDDNKLLTLPNGERLSLPPNIRIM 168 (1614)
Q Consensus 98 ---t~eW~----DGvls~i~r~~~~~~~--~~~~~~~WivfDG~vd~~WiE~lnsvLDdnk~L~L~nGeri~l~~~~~~i 168 (1614)
++... ..+-..-+|+...... .....++-+|+| ++|..=.+.-|++| |+|- .-|+++.||
T Consensus 98 ~~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~-~ae~m~~~AaNaLL---KtLE-------EPp~~t~fi 166 (342)
T PRK06964 98 ADEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLY-PAEALNVAAANALL---KTLE-------EPPPGTVFL 166 (342)
T ss_pred hhcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEe-chhhcCHHHHHHHH---HHhc-------CCCcCcEEE
Confidence 01110 1233445565543221 122356778888 47777777778888 5554 467889999
Q ss_pred EEeccccccCccccccceeEEecCcccchHHHHHHHHHh
Q psy568 169 FEVQDLKYATLATVSRCGMIWFSEDVLSTEMIFENYLSR 207 (1614)
Q Consensus 169 FEv~dL~~ASPAtVSRcgmv~~~~~~l~~~~~~~~~~~~ 207 (1614)
+-+++....=|..+|||-.|++.+-. ..-+..|+..
T Consensus 167 L~t~~~~~LLpTI~SRcq~i~~~~~~---~~~~~~~L~~ 202 (342)
T PRK06964 167 LVSARIDRLLPTILSRCRQFPMTVPA---PEAAAAWLAA 202 (342)
T ss_pred EEECChhhCcHHHHhcCEEEEecCCC---HHHHHHHHHH
Confidence 99999999999889999999998754 3456677754
No 359
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.53 E-value=0.015 Score=64.94 Aligned_cols=33 Identities=33% Similarity=0.396 Sum_probs=27.4
Q ss_pred HHHHhcCCCEEEecCCCCchHHHHHHHHhcCCC
Q psy568 410 YTWLAEHKPLVLCGPPGSGKTMTLLSALRALPD 442 (1614)
Q Consensus 410 ~~~l~~~~~vLL~Gp~GtGKT~lv~~~~~~l~~ 442 (1614)
+.++.....+.++|++|||||+++..++..+..
T Consensus 7 ~~l~~~~fr~viIG~sGSGKT~li~~lL~~~~~ 39 (241)
T PF04665_consen 7 NSLLKDPFRMVIIGKSGSGKTTLIKSLLYYLRH 39 (241)
T ss_pred hHhcCCCceEEEECCCCCCHHHHHHHHHHhhcc
Confidence 345666778999999999999999999987744
No 360
>KOG0250|consensus
Probab=96.52 E-value=5.1 Score=53.05 Aligned_cols=40 Identities=23% Similarity=0.238 Sum_probs=26.9
Q ss_pred EEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCCHHHHHhHhhc
Q psy568 420 VLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTPELLLKTFDH 465 (1614)
Q Consensus 420 LL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~~~~l~~~~~~ 465 (1614)
+++|+.|+|||+++-++.-.+.+. .|..--++.+++.+..
T Consensus 66 fI~G~NGSGKSAIltAl~lglG~r------As~tnRgsslK~lIK~ 105 (1074)
T KOG0250|consen 66 FIVGNNGSGKSAILTALTLGLGGR------ASATNRGSSLKDLIKD 105 (1074)
T ss_pred EeecCCCCcHHHHHHHHHHhhccc------cccccchhhHHHHHhC
Confidence 789999999999887776655321 2233345667666643
No 361
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.52 E-value=0.0071 Score=65.76 Aligned_cols=65 Identities=20% Similarity=0.319 Sum_probs=51.9
Q ss_pred cEEEeecCCCChHHHHHHHHHHcCCeEEEEEecCCCC--hhcHHHHHHHHHHHhccCCCcEEEEEcCC
Q psy568 759 HLLLIGVSGAGKTTLSRFVAFMNGLSVFQIRAHNKYT--GADFDEDLRTVLRRSGCKNEKIAFLLDES 824 (1614)
Q Consensus 759 h~LLvG~~GsGKtsl~rlaA~~~~~~~~~i~~~~~~~--~~df~~~lk~~l~~ag~~~~~~v~ll~d~ 824 (1614)
++|+.||+|+|||-++|.+|.-+..++..+..++..+ +.|=-.-++.++.+|. +.-|+++++|+-
T Consensus 153 nVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehVGdgar~Ihely~rA~-~~aPcivFiDE~ 219 (368)
T COG1223 153 NVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVGDGARRIHELYERAR-KAAPCIVFIDEL 219 (368)
T ss_pred eeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHhhhHHHHHHHHHHHHH-hcCCeEEEehhh
Confidence 6999999999999999999999999999988665543 3333345777888874 567888888874
No 362
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=96.52 E-value=0.53 Score=59.27 Aligned_cols=131 Identities=18% Similarity=0.240 Sum_probs=76.5
Q ss_pred ccE-EEeecCCCChHHHHHHHHHHcC------------------------CeEEEEEecCCCChhcHHHHHHHHHHHhcc
Q psy568 758 GHL-LLIGVSGAGKTTLSRFVAFMNG------------------------LSVFQIRAHNKYTGADFDEDLRTVLRRSGC 812 (1614)
Q Consensus 758 gh~-LLvG~~GsGKtsl~rlaA~~~~------------------------~~~~~i~~~~~~~~~df~~~lk~~l~~ag~ 812 (1614)
+|+ ||.|++|+|||++++.+|.... ..+++++.....+..+.++.+...- ....
T Consensus 36 ~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~eldaas~~gId~IRelie~~~-~~P~ 114 (535)
T PRK08451 36 AHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIEMDAASNRGIDDIRELIEQTK-YKPS 114 (535)
T ss_pred CeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEEeccccccCHHHHHHHHHHHh-hCcc
Confidence 455 8999999999999998876542 1344444332333444444332221 1223
Q ss_pred CCCcEEEEEcCCcccccchHHHHHHhhccCCCCCCCChhhHHHHHHHhHHHHHHcCCCCCCHHHHHHHHHHHHhhcceEE
Q psy568 813 KNEKIAFLLDESNVLESGFLERMNTLLANGEIPGLFEGDEYTTLMTQCKEGAQREGLMLDSNEELYKWFTQQVMKNLHVV 892 (1614)
Q Consensus 813 ~~~~~v~ll~d~~i~~~~~le~in~lL~~G~v~~Lf~~eE~~~i~~~~~~~~~~~~~~~~s~~~l~~~f~~rv~~nlhiv 892 (1614)
.+..-++++++.+-.+.+ ..|.|| . .++.-..+..++
T Consensus 115 ~~~~KVvIIDEad~Lt~~---A~NALL------------------K----------------------~LEEpp~~t~FI 151 (535)
T PRK08451 115 MARFKIFIIDEVHMLTKE---AFNALL------------------K----------------------TLEEPPSYVKFI 151 (535)
T ss_pred cCCeEEEEEECcccCCHH---HHHHHH------------------H----------------------HHhhcCCceEEE
Confidence 345567788875443321 122222 1 011112366777
Q ss_pred EEECCCChhhHHHhhhCccccccceecccCCCcHHHHHHHHHHhhcc
Q psy568 893 FTMNPSSEGLKDRAATSPALFNRCVLNWFGDWSDTALYQVAKEFTSK 939 (1614)
Q Consensus 893 l~~sp~~~~~r~~~~~~PaL~~~~~i~wf~~W~~eaL~~va~~~l~~ 939 (1614)
|+.... ....|++.++|.+.-|.+-+.+.+.....+.+..
T Consensus 152 L~ttd~-------~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~ 191 (535)
T PRK08451 152 LATTDP-------LKLPATILSRTQHFRFKQIPQNSIISHLKTILEK 191 (535)
T ss_pred EEECCh-------hhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHH
Confidence 766321 2346889999999999999999888777666553
No 363
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=96.51 E-value=0.0016 Score=64.38 Aligned_cols=43 Identities=40% Similarity=0.464 Sum_probs=29.1
Q ss_pred cEEEeecCCCChHHHHHHHHHHcCCeEEEEEecCCCChhcHHH
Q psy568 759 HLLLIGVSGAGKTTLSRFVAFMNGLSVFQIRAHNKYTGADFDE 801 (1614)
Q Consensus 759 h~LLvG~~GsGKtsl~rlaA~~~~~~~~~i~~~~~~~~~df~~ 801 (1614)
|+||.|++|+|||++++.+|...|.++..|+.+.+...+|..+
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G 43 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILG 43 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHE
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCccccee
Confidence 8999999999999999999999999999998887666666443
No 364
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.51 E-value=0.0047 Score=73.07 Aligned_cols=99 Identities=12% Similarity=0.242 Sum_probs=52.9
Q ss_pred HHHHHHhcCCCEEEecCCCCchHHHHHHHHhcCC--CCceEEEEcccCCCHHHHHhHhhcc-cceeecCCcc-ccccccC
Q psy568 408 LLYTWLAEHKPLVLCGPPGSGKTMTLLSALRALP--DMEVVSLNFSSATTPELLLKTFDHY-CEYRKTPNGV-ILSPIQL 483 (1614)
Q Consensus 408 ll~~~l~~~~~vLL~Gp~GtGKT~lv~~~~~~l~--~~~~~~i~~s~~t~~~~l~~~~~~~-~~~~~~~~g~-~~~p~~~ 483 (1614)
++..+-..+.+++|+||+|+|||.++..++..+. +..++.++. .++...+... ..... ... .+....
T Consensus 175 f~~~f~~~~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~------~~l~~~l~~~~~~~~~--~~~~~~~~l~- 245 (329)
T PRK06835 175 FIENFDKNNENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTA------DELIEILREIRFNNDK--ELEEVYDLLI- 245 (329)
T ss_pred HHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEH------HHHHHHHHHHHhccch--hHHHHHHHhc-
Confidence 3344444679999999999999999988887653 444444433 2333333211 00000 000 011111
Q ss_pred CceEEEEeccCCCCCccccCcccHHHHHHHHHH
Q psy568 484 GKWLVLFCDEINLPDMDKYATQRVISFLRQLIE 516 (1614)
Q Consensus 484 gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld 516 (1614)
.-=+|+|||+.......+......+++..-..
T Consensus 246 -~~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~ 277 (329)
T PRK06835 246 -NCDLLIIDDLGTEKITEFSKSELFNLINKRLL 277 (329)
T ss_pred -cCCEEEEeccCCCCCCHHHHHHHHHHHHHHHH
Confidence 11256679998865555544455555544444
No 365
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=96.51 E-value=0.0086 Score=63.90 Aligned_cols=127 Identities=21% Similarity=0.369 Sum_probs=83.0
Q ss_pred hHHHHHHHH-HHHHHhccEEEEecCCCCChhhHHHHHHHHHHHhhcCCceEEEeCCCCCCcC----cccccccC---CCC
Q psy568 28 PWMEKVLQL-YQISNLNHGLMMVGPSGSGKSTAWKVLLKALERYEGVEGVAHIIDPKAISKE----ALYGVLDP---NTR 99 (1614)
Q Consensus 28 ~~~~K~~qL-~e~~~~r~gVmlvG~~gsGKTt~~~~L~~al~~~~~~~~~~~~inPkais~~----eLyG~~d~---~t~ 99 (1614)
+-+.++++. -........|+|+|++||||+.+.+.+.+.-.+ .......+|..+++.+ +|||.... ...
T Consensus 6 ~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s~r---~~~pfi~vnc~~~~~~~~e~~LFG~~~~~~~~~~ 82 (168)
T PF00158_consen 6 PAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNSPR---KNGPFISVNCAALPEELLESELFGHEKGAFTGAR 82 (168)
T ss_dssp HHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCSTT---TTS-EEEEETTTS-HHHHHHHHHEBCSSSSTTTS
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhhhc---ccCCeEEEehhhhhcchhhhhhhccccccccccc
Confidence 444444444 344456678999999999999998888774221 2334567898888744 78998642 223
Q ss_pred ccccchHHHHHHHHHhhhcCCCCCceEEEEcc--CCChhhhhhhhhhhcCCCccccCCCceeeCCCCceEEEEec
Q psy568 100 EWTDGLFTHILRRIIDNVRGEISKRQWIIFDG--DVDPEWVENLNSVLDDNKLLTLPNGERLSLPPNIRIMFEVQ 172 (1614)
Q Consensus 100 eW~DGvls~i~r~~~~~~~~~~~~~~WivfDG--~vd~~WiE~lnsvLDdnk~L~L~nGeri~l~~~~~~iFEv~ 172 (1614)
..+.|+|..+ ..--+++|. ...+..=+.|-.+|++++...+.+.+.+ +.++|+|+=++
T Consensus 83 ~~~~G~l~~A-------------~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~--~~~~RiI~st~ 142 (168)
T PF00158_consen 83 SDKKGLLEQA-------------NGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPV--PVDVRIIASTS 142 (168)
T ss_dssp SEBEHHHHHT-------------TTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEE--E--EEEEEEES
T ss_pred cccCCceeec-------------cceEEeecchhhhHHHHHHHHHHHHhhchhccccccccc--cccceEEeecC
Confidence 4556655432 124688885 7888999999999999887777655544 45899988654
No 366
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.50 E-value=0.015 Score=74.89 Aligned_cols=88 Identities=20% Similarity=0.263 Sum_probs=51.4
Q ss_pred hhHHHHHHHHHHHHHHhccCCccEEEeecCCCChHHHHHHHHHHcCC--------------------------eEEEEEe
Q psy568 737 VLFDEVLDHVLRIDRIFRQPQGHLLLIGVSGAGKTTLSRFVAFMNGL--------------------------SVFQIRA 790 (1614)
Q Consensus 737 vlf~~~i~hi~ri~Ril~~p~gh~LLvG~~GsGKtsl~rlaA~~~~~--------------------------~~~~i~~ 790 (1614)
+..++++..+.+..+.=+.+ .++||.|++|+|||++++.+|...++ +++++..
T Consensus 19 iGq~~i~~~L~~~l~~~rl~-~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~i~~g~h~D~~ei~~ 97 (620)
T PRK14948 19 VGQEAIATTLKNALISNRIA-PAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRAIAAGNALDVIEIDA 97 (620)
T ss_pred cChHHHHHHHHHHHHcCCCC-ceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHHHhcCCCccEEEEec
Confidence 33444444444443322222 35889999999999999999877655 2334433
Q ss_pred cCCCChhcHHHHHHHHHHHh---ccCCCcEEEEEcCCccccc
Q psy568 791 HNKYTGADFDEDLRTVLRRS---GCKNEKIAFLLDESNVLES 829 (1614)
Q Consensus 791 ~~~~~~~df~~~lk~~l~~a---g~~~~~~v~ll~d~~i~~~ 829 (1614)
....+.. .++.++..+ ...+..-|+++++.+-...
T Consensus 98 ~~~~~vd----~IReii~~a~~~p~~~~~KViIIDEad~Lt~ 135 (620)
T PRK14948 98 ASNTGVD----NIRELIERAQFAPVQARWKVYVIDECHMLST 135 (620)
T ss_pred cccCCHH----HHHHHHHHHhhChhcCCceEEEEECccccCH
Confidence 3233333 444444433 2345567888888765554
No 367
>PRK04863 mukB cell division protein MukB; Provisional
Probab=96.50 E-value=8 Score=55.01 Aligned_cols=23 Identities=35% Similarity=0.499 Sum_probs=19.2
Q ss_pred CEEEecCCCCchHHHHHHHHhcC
Q psy568 418 PLVLCGPPGSGKTMTLLSALRAL 440 (1614)
Q Consensus 418 ~vLL~Gp~GtGKT~lv~~~~~~l 440 (1614)
-++|+|+.|+||||++..+...+
T Consensus 29 ~~~l~G~NGaGKSTll~ai~~~l 51 (1486)
T PRK04863 29 VTTLSGGNGAGKSTTMAAFVTAL 51 (1486)
T ss_pred eEEEECCCCCCHHHHHHHHHccc
Confidence 57889999999999888777655
No 368
>KOG0161|consensus
Probab=96.49 E-value=5.2 Score=57.22 Aligned_cols=27 Identities=26% Similarity=0.510 Sum_probs=22.7
Q ss_pred cEEEEecCCCCChhhHHHHHHHHHHHh
Q psy568 44 HGLMMVGPSGSGKSTAWKVLLKALERY 70 (1614)
Q Consensus 44 ~gVmlvG~~gsGKTt~~~~L~~al~~~ 70 (1614)
..+++.|.||+|||+..+-...-+...
T Consensus 169 QSiLiTGESGAGKTeNTKkVIqyla~v 195 (1930)
T KOG0161|consen 169 QSILITGESGAGKTENTKKVIQYLASV 195 (1930)
T ss_pred ceEeeecCCCCCcchhHHHHHHHHHHH
Confidence 489999999999999988877766554
No 369
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=96.45 E-value=0.017 Score=70.15 Aligned_cols=68 Identities=13% Similarity=0.178 Sum_probs=42.2
Q ss_pred EEEeecCCCChHHHHHHHHHHcCCe-----------------------EEEEEec-CCCChhcHHHHHHHHHHHh---cc
Q psy568 760 LLLIGVSGAGKTTLSRFVAFMNGLS-----------------------VFQIRAH-NKYTGADFDEDLRTVLRRS---GC 812 (1614)
Q Consensus 760 ~LLvG~~GsGKtsl~rlaA~~~~~~-----------------------~~~i~~~-~~~~~~df~~~lk~~l~~a---g~ 812 (1614)
+||.||+|+|||++++.+|....++ ++.+... ...+..+ ++.+...+ ..
T Consensus 39 ~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~hpD~~~i~~~~~~i~i~~----iR~l~~~~~~~p~ 114 (394)
T PRK07940 39 WLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTHPDVRVVAPEGLSIGVDE----VRELVTIAARRPS 114 (394)
T ss_pred EEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEeccccccCCHHH----HHHHHHHHHhCcc
Confidence 7799999999999999887654332 2233222 2233343 44444433 34
Q ss_pred CCCcEEEEEcCCcccccch
Q psy568 813 KNEKIAFLLDESNVLESGF 831 (1614)
Q Consensus 813 ~~~~~v~ll~d~~i~~~~~ 831 (1614)
.++..|+++++.+-.++..
T Consensus 115 ~~~~kViiIDead~m~~~a 133 (394)
T PRK07940 115 TGRWRIVVIEDADRLTERA 133 (394)
T ss_pred cCCcEEEEEechhhcCHHH
Confidence 5566788888877665543
No 370
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.45 E-value=0.019 Score=68.23 Aligned_cols=73 Identities=12% Similarity=0.074 Sum_probs=49.4
Q ss_pred CCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCCCcccccccccEE
Q psy568 483 LGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLRHVPVI 562 (1614)
Q Consensus 483 ~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r~f~~i 562 (1614)
.|++=|++||+.+.-... ....+|.-+ |. | .+++.||.+++.++ .|.+-+.+|+..+
T Consensus 130 ~~~~kV~iI~~ae~m~~~-----AaNaLLKtL-EE-----P-------p~~t~fiL~t~~~~-----~LLpTI~SRcq~i 186 (342)
T PRK06964 130 RGGARVVVLYPAEALNVA-----AANALLKTL-EE-----P-------PPGTVFLLVSARID-----RLLPTILSRCRQF 186 (342)
T ss_pred cCCceEEEEechhhcCHH-----HHHHHHHHh-cC-----C-------CcCcEEEEEECChh-----hCcHHHHhcCEEE
Confidence 355567778998873322 334455443 42 1 13566666666554 6888999999999
Q ss_pred EecCCChhHHHHHHHH
Q psy568 563 YVDYPGETSLKQIYGT 578 (1614)
Q Consensus 563 ~i~~p~~~~l~~I~~~ 578 (1614)
.++.|+.+++...+..
T Consensus 187 ~~~~~~~~~~~~~L~~ 202 (342)
T PRK06964 187 PMTVPAPEAAAAWLAA 202 (342)
T ss_pred EecCCCHHHHHHHHHH
Confidence 9999999988877654
No 371
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=96.44 E-value=0.0083 Score=71.52 Aligned_cols=150 Identities=18% Similarity=0.178 Sum_probs=93.4
Q ss_pred chHHHHHHHHHHHHHhccEEEEecCCCCChhhHHHHHHHHHHHhhcC--CceEEEeCCCCCCcCcccccccCCCCccccc
Q psy568 27 GPWMEKVLQLYQISNLNHGLMMVGPSGSGKSTAWKVLLKALERYEGV--EGVAHIIDPKAISKEALYGVLDPNTREWTDG 104 (1614)
Q Consensus 27 ~~~~~K~~qL~e~~~~r~gVmlvG~~gsGKTt~~~~L~~al~~~~~~--~~~~~~inPkais~~eLyG~~d~~t~eW~DG 104 (1614)
+.-+.+..+-++.=+..|..++.||.|+|||++.+.+++++.-.... ....+.+.|. -|. .
T Consensus 10 ~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~-------~~~----------~ 72 (313)
T PRK05564 10 ENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPI-------NKK----------S 72 (313)
T ss_pred HHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccc-------cCC----------C
Confidence 34455666666667788999999999999999999999987321100 0011222221 010 1
Q ss_pred hHHHHHHHHHhhh--cCCCCCceEEEEccCCChhhhhhhhhhhcCCCccccCCCceeeCCCCceEEEEeccccccCcccc
Q psy568 105 LFTHILRRIIDNV--RGEISKRQWIIFDGDVDPEWVENLNSVLDDNKLLTLPNGERLSLPPNIRIMFEVQDLKYATLATV 182 (1614)
Q Consensus 105 vls~i~r~~~~~~--~~~~~~~~WivfDG~vd~~WiE~lnsvLDdnk~L~L~nGeri~l~~~~~~iFEv~dL~~ASPAtV 182 (1614)
+=..-+|+..... ......++.+|+|. +|..=.+.-|++| | +|-+ .|+++.+|+-+++....-|+..
T Consensus 73 i~v~~ir~~~~~~~~~p~~~~~kv~iI~~-ad~m~~~a~naLL---K--~LEe-----pp~~t~~il~~~~~~~ll~TI~ 141 (313)
T PRK05564 73 IGVDDIRNIIEEVNKKPYEGDKKVIIIYN-SEKMTEQAQNAFL---K--TIEE-----PPKGVFIILLCENLEQILDTIK 141 (313)
T ss_pred CCHHHHHHHHHHHhcCcccCCceEEEEec-hhhcCHHHHHHHH---H--HhcC-----CCCCeEEEEEeCChHhCcHHHH
Confidence 1122355554321 11233678888887 3444444556666 2 2222 5778899999999999999889
Q ss_pred ccceeEEecCcccchHHHHHHHHHh
Q psy568 183 SRCGMIWFSEDVLSTEMIFENYLSR 207 (1614)
Q Consensus 183 SRcgmv~~~~~~l~~~~~~~~~~~~ 207 (1614)
|||-++.+.+-. ..-+..|+.+
T Consensus 142 SRc~~~~~~~~~---~~~~~~~l~~ 163 (313)
T PRK05564 142 SRCQIYKLNRLS---KEEIEKFISY 163 (313)
T ss_pred hhceeeeCCCcC---HHHHHHHHHH
Confidence 999999987642 2334678764
No 372
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.43 E-value=0.026 Score=66.50 Aligned_cols=145 Identities=19% Similarity=0.203 Sum_probs=96.6
Q ss_pred HHHHHHHHHHhccEEEEecCCCCChhhHHHHHHHHHHHhh---cCC---------------ceEEEeCCCCCCcCccccc
Q psy568 32 KVLQLYQISNLNHGLMMVGPSGSGKSTAWKVLLKALERYE---GVE---------------GVAHIIDPKAISKEALYGV 93 (1614)
Q Consensus 32 K~~qL~e~~~~r~gVmlvG~~gsGKTt~~~~L~~al~~~~---~~~---------------~~~~~inPkais~~eLyG~ 93 (1614)
...+.++.-+..|+.++.||+|+||+++.+.+++++.-.. +.+ ..++++.|.. |
T Consensus 13 ~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~-------~- 84 (325)
T PRK06871 13 QITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPID-------N- 84 (325)
T ss_pred HHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEcccc-------C-
Confidence 4445555557789999999999999999999999984211 001 1133444420 0
Q ss_pred ccCCCCccccchHHHHHHHHHhhh--cCCCCCceEEEEccCCChhhhhhhhhhhcCCCccccCCCceeeCCCCceEEEEe
Q psy568 94 LDPNTREWTDGLFTHILRRIIDNV--RGEISKRQWIIFDGDVDPEWVENLNSVLDDNKLLTLPNGERLSLPPNIRIMFEV 171 (1614)
Q Consensus 94 ~d~~t~eW~DGvls~i~r~~~~~~--~~~~~~~~WivfDG~vd~~WiE~lnsvLDdnk~L~L~nGeri~l~~~~~~iFEv 171 (1614)
..+=..-+|+..... ......++.+|+|. +|..=.++-|++| |+|-= -|+++.||+-+
T Consensus 85 ---------~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~-a~~m~~~AaNaLL---KtLEE-------Pp~~~~fiL~t 144 (325)
T PRK06871 85 ---------KDIGVDQVREINEKVSQHAQQGGNKVVYIQG-AERLTEAAANALL---KTLEE-------PRPNTYFLLQA 144 (325)
T ss_pred ---------CCCCHHHHHHHHHHHhhccccCCceEEEEec-hhhhCHHHHHHHH---HHhcC-------CCCCeEEEEEE
Confidence 112234556654322 12234578888887 6666677888888 44432 46678899999
Q ss_pred ccccccCccccccceeEEecCcccchHHHHHHHHHh
Q psy568 172 QDLKYATLATVSRCGMIWFSEDVLSTEMIFENYLSR 207 (1614)
Q Consensus 172 ~dL~~ASPAtVSRcgmv~~~~~~l~~~~~~~~~~~~ 207 (1614)
++....-|..+|||-.+.+.+-. ...+..|+..
T Consensus 145 ~~~~~llpTI~SRC~~~~~~~~~---~~~~~~~L~~ 177 (325)
T PRK06871 145 DLSAALLPTIYSRCQTWLIHPPE---EQQALDWLQA 177 (325)
T ss_pred CChHhCchHHHhhceEEeCCCCC---HHHHHHHHHH
Confidence 99999988889999999998764 3456677764
No 373
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=96.43 E-value=0.025 Score=66.93 Aligned_cols=72 Identities=11% Similarity=0.130 Sum_probs=47.8
Q ss_pred CceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCCCcccccccccEEE
Q psy568 484 GKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLRHVPVIY 563 (1614)
Q Consensus 484 gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r~f~~i~ 563 (1614)
|.+-|++||+.+. -+......|+-.++.- ++..||-.++.+. .|.+.+.+|+.++.
T Consensus 123 ~~~kVvII~~ae~------m~~~aaNaLLK~LEEP-------------p~~~fILi~~~~~-----~Ll~TI~SRcq~i~ 178 (314)
T PRK07399 123 APRKVVVIEDAET------MNEAAANALLKTLEEP-------------GNGTLILIAPSPE-----SLLPTIVSRCQIIP 178 (314)
T ss_pred CCceEEEEEchhh------cCHHHHHHHHHHHhCC-------------CCCeEEEEECChH-----hCcHHHHhhceEEe
Confidence 4556777899876 3333334444455531 1233444454443 68888999999999
Q ss_pred ecCCChhHHHHHHHHH
Q psy568 564 VDYPGETSLKQIYGTF 579 (1614)
Q Consensus 564 i~~p~~~~l~~I~~~~ 579 (1614)
++.|+.+++..++...
T Consensus 179 f~~l~~~~~~~~L~~~ 194 (314)
T PRK07399 179 FYRLSDEQLEQVLKRL 194 (314)
T ss_pred cCCCCHHHHHHHHHHh
Confidence 9999999998887654
No 374
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.43 E-value=0.42 Score=58.76 Aligned_cols=29 Identities=21% Similarity=0.354 Sum_probs=25.7
Q ss_pred ccCCccEEEeecCCCChHHHHHHHHHHcC
Q psy568 754 RQPQGHLLLIGVSGAGKTTLSRFVAFMNG 782 (1614)
Q Consensus 754 ~~p~gh~LLvG~~GsGKtsl~rlaA~~~~ 782 (1614)
-..+||+||.||||+|||+++|.++...+
T Consensus 36 alag~hVLL~GpPGTGKT~LAraLa~~~~ 64 (498)
T PRK13531 36 ALSGESVFLLGPPGIAKSLIARRLKFAFQ 64 (498)
T ss_pred HccCCCEEEECCCChhHHHHHHHHHHHhc
Confidence 35789999999999999999999998754
No 375
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.42 E-value=0.027 Score=66.46 Aligned_cols=136 Identities=11% Similarity=0.064 Sum_probs=81.3
Q ss_pred HHHHHhcC---CCEEEecCCCCchHHHHHHHHhcCCCC----------------------c-eEEEEc--ccCCCHHHHH
Q psy568 409 LYTWLAEH---KPLVLCGPPGSGKTMTLLSALRALPDM----------------------E-VVSLNF--SSATTPELLL 460 (1614)
Q Consensus 409 l~~~l~~~---~~vLL~Gp~GtGKT~lv~~~~~~l~~~----------------------~-~~~i~~--s~~t~~~~l~ 460 (1614)
+..++..| +..|+.||+|+||++++..+++.+... + +..+.- +.....+.+.
T Consensus 14 l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~id~iR 93 (325)
T PRK06871 14 ITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIGVDQVR 93 (325)
T ss_pred HHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCCCHHHHH
Confidence 44455443 578899999999999999998765210 0 111211 1123334443
Q ss_pred hHhhcccceeecCCccccccccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEee
Q psy568 461 KTFDHYCEYRKTPNGVILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGAC 540 (1614)
Q Consensus 461 ~~~~~~~~~~~~~~g~~~~p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~ 540 (1614)
...+ .....|. .|++=|++||+.+.-.. +....+|+-+ |. | .+++.||-++
T Consensus 94 ~l~~----------~~~~~~~-~g~~KV~iI~~a~~m~~-----~AaNaLLKtL-EE-----P-------p~~~~fiL~t 144 (325)
T PRK06871 94 EINE----------KVSQHAQ-QGGNKVVYIQGAERLTE-----AAANALLKTL-EE-----P-------RPNTYFLLQA 144 (325)
T ss_pred HHHH----------HHhhccc-cCCceEEEEechhhhCH-----HHHHHHHHHh-cC-----C-------CCCeEEEEEE
Confidence 3221 1123343 35566777899987322 2334455444 42 1 1355666666
Q ss_pred cCCCCCCCCCCcccccccccEEEecCCChhHHHHHHHH
Q psy568 541 NPPTDPGRKPLSHRFLRHVPVIYVDYPGETSLKQIYGT 578 (1614)
Q Consensus 541 n~~~~~g~~~l~~r~~r~f~~i~i~~p~~~~l~~I~~~ 578 (1614)
+.+. .+.+-..+|+..+.++.|+.+++...+..
T Consensus 145 ~~~~-----~llpTI~SRC~~~~~~~~~~~~~~~~L~~ 177 (325)
T PRK06871 145 DLSA-----ALLPTIYSRCQTWLIHPPEEQQALDWLQA 177 (325)
T ss_pred CChH-----hCchHHHhhceEEeCCCCCHHHHHHHHHH
Confidence 5443 68888999999999999999988766544
No 376
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=96.42 E-value=0.019 Score=73.13 Aligned_cols=80 Identities=21% Similarity=0.305 Sum_probs=48.5
Q ss_pred EEEeecCCCChHHHHHHHHHHcCCe------------------------EEEEEecCCCChhcHHHHHHHHHHHhccCCC
Q psy568 760 LLLIGVSGAGKTTLSRFVAFMNGLS------------------------VFQIRAHNKYTGADFDEDLRTVLRRSGCKNE 815 (1614)
Q Consensus 760 ~LLvG~~GsGKtsl~rlaA~~~~~~------------------------~~~i~~~~~~~~~df~~~lk~~l~~ag~~~~ 815 (1614)
.||.||+|+|||++++.+|...++. +..+.-....+..++++ +..-+......++
T Consensus 41 yLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~dv~~idgas~~~vddIr~-l~e~~~~~p~~~~ 119 (563)
T PRK06647 41 YIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLDVIEIDGASNTSVQDVRQ-IKEEIMFPPASSR 119 (563)
T ss_pred EEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCCeEEecCcccCCHHHHHH-HHHHHHhchhcCC
Confidence 7899999999999999998876542 33332222233444443 2222233334566
Q ss_pred cEEEEEcCCcccccchHHHHHHhhccCC
Q psy568 816 KIAFLLDESNVLESGFLERMNTLLANGE 843 (1614)
Q Consensus 816 ~~v~ll~d~~i~~~~~le~in~lL~~G~ 843 (1614)
.-++++++.+..... ..|.||.+-+
T Consensus 120 ~KVvIIDEa~~Ls~~---a~naLLK~LE 144 (563)
T PRK06647 120 YRVYIIDEVHMLSNS---AFNALLKTIE 144 (563)
T ss_pred CEEEEEEChhhcCHH---HHHHHHHhhc
Confidence 778888887665543 4556665544
No 377
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.41 E-value=0.017 Score=71.73 Aligned_cols=78 Identities=24% Similarity=0.387 Sum_probs=46.4
Q ss_pred cEEEeecCCCChHHHHHHHHHHc-----CCeEEEEEecCCCChhcHHHHHHHHHHHhc-------cCCCcEEEEEcCCcc
Q psy568 759 HLLLIGVSGAGKTTLSRFVAFMN-----GLSVFQIRAHNKYTGADFDEDLRTVLRRSG-------CKNEKIAFLLDESNV 826 (1614)
Q Consensus 759 h~LLvG~~GsGKtsl~rlaA~~~-----~~~~~~i~~~~~~~~~df~~~lk~~l~~ag-------~~~~~~v~ll~d~~i 826 (1614)
+++|.|++|+|||.|++.+|+.. +..+..++. .+|..++...+.... ....+-++++||-+.
T Consensus 132 ~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~------~~f~~~~~~~~~~~~~~~f~~~~~~~~dvLlIDDi~~ 205 (440)
T PRK14088 132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS------EKFLNDLVDSMKEGKLNEFREKYRKKVDVLLIDDVQF 205 (440)
T ss_pred eEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH------HHHHHHHHHHHhcccHHHHHHHHHhcCCEEEEechhh
Confidence 69999999999999999888753 456666643 445554443332110 012345788888764
Q ss_pred c-c-----cchHHHHHHhhccC
Q psy568 827 L-E-----SGFLERMNTLLANG 842 (1614)
Q Consensus 827 ~-~-----~~~le~in~lL~~G 842 (1614)
. + .+++..+|.+...|
T Consensus 206 l~~~~~~q~elf~~~n~l~~~~ 227 (440)
T PRK14088 206 LIGKTGVQTELFHTFNELHDSG 227 (440)
T ss_pred hcCcHHHHHHHHHHHHHHHHcC
Confidence 2 1 23444455554444
No 378
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=96.41 E-value=0.013 Score=69.80 Aligned_cols=114 Identities=21% Similarity=0.308 Sum_probs=71.5
Q ss_pred hhHHHHHHH--HHhcCCCEEEecCCCCchHHHHHHHHhc--C-CCCceEEEEcccCCCHHHHHhHhhcccceeecCCccc
Q psy568 403 VRHESLLYT--WLAEHKPLVLCGPPGSGKTMTLLSALRA--L-PDMEVVSLNFSSATTPELLLKTFDHYCEYRKTPNGVI 477 (1614)
Q Consensus 403 ~r~~~ll~~--~l~~~~~vLL~Gp~GtGKT~lv~~~~~~--l-~~~~~~~i~~s~~t~~~~l~~~~~~~~~~~~~~~g~~ 477 (1614)
.+...+..+ ++..+.|+++.||+|||||.++.++... + .+ ..+++..+...+... . -|.
T Consensus 194 ~k~~~L~rl~~fve~~~Nli~lGp~GTGKThla~~l~~~~a~~sG---------~f~T~a~Lf~~L~~~----~--lg~- 257 (449)
T TIGR02688 194 QKLLLLARLLPLVEPNYNLIELGPKGTGKSYIYNNLSPYVILISG---------GTITVAKLFYNISTR----Q--IGL- 257 (449)
T ss_pred HHHHHHHhhHHHHhcCCcEEEECCCCCCHHHHHHHHhHHHHHHcC---------CcCcHHHHHHHHHHH----H--Hhh-
Confidence 344445444 7889999999999999999988876543 1 12 456666666665431 1 122
Q ss_pred cccccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEee
Q psy568 478 LSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGAC 540 (1614)
Q Consensus 478 ~~p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~ 540 (1614)
-+++=++.|||+-.-..+ .....+..|...|+.|.|-. .......-..+.|+|-.
T Consensus 258 -----v~~~DlLI~DEvgylp~~--~~~~~v~imK~yMesg~fsR-G~~~~~a~as~vfvGNi 312 (449)
T TIGR02688 258 -----VGRWDVVAFDEVATLKFA--KPKELIGILKNYMESGSFTR-GDETKSSDASFVFLGNV 312 (449)
T ss_pred -----hccCCEEEEEcCCCCcCC--chHHHHHHHHHHHHhCceec-cceeeeeeeEEEEEccc
Confidence 244556667999984333 33457788999999877543 33333333445555533
No 379
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=96.40 E-value=5.8 Score=56.97 Aligned_cols=23 Identities=35% Similarity=0.426 Sum_probs=20.3
Q ss_pred EEEEecCCCCChhhHHHHHHHHH
Q psy568 45 GLMMVGPSGSGKSTAWKVLLKAL 67 (1614)
Q Consensus 45 gVmlvG~~gsGKTt~~~~L~~al 67 (1614)
-++||||.|||||+++..+.-++
T Consensus 25 ~~~i~G~NGsGKS~ll~ai~~~l 47 (1179)
T TIGR02168 25 ITGIVGPNGCGKSNIVDAIRWVL 47 (1179)
T ss_pred cEEEECCCCCChhHHHHHHHHHH
Confidence 58999999999999998887776
No 380
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=96.37 E-value=0.0091 Score=71.71 Aligned_cols=140 Identities=23% Similarity=0.274 Sum_probs=89.5
Q ss_pred CCccEEEeecCCCChHHHHHHHHHHcCCeEEEEEecCCCChhcHHHHHHHHHHH--hc----cCC---Cc--EEEEEcCC
Q psy568 756 PQGHLLLIGVSGAGKTTLSRFVAFMNGLSVFQIRAHNKYTGADFDEDLRTVLRR--SG----CKN---EK--IAFLLDES 824 (1614)
Q Consensus 756 p~gh~LLvG~~GsGKtsl~rlaA~~~~~~~~~i~~~~~~~~~df~~~lk~~l~~--ag----~~~---~~--~v~ll~d~ 824 (1614)
-+||+||.|++|+|||.+++.+|...|.+++.+.++..+..+|..+..--.-.. .+ ++| .. .++++|+-
T Consensus 42 ~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEI 121 (329)
T COG0714 42 AGGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEI 121 (329)
T ss_pred cCCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccceEEEEecc
Confidence 578999999999999999999999999999999999998877754432111110 11 111 12 37888887
Q ss_pred cccccchHHHHHHhhccCCCCCCCChhhHHHHHHHhHHHHHHcCCCCCCHHHHHHHHHHHHhhcceEEEEECCCChhhHH
Q psy568 825 NVLESGFLERMNTLLANGEIPGLFEGDEYTTLMTQCKEGAQREGLMLDSNEELYKWFTQQVMKNLHVVFTMNPSSEGLKD 904 (1614)
Q Consensus 825 ~i~~~~~le~in~lL~~G~v~~Lf~~eE~~~i~~~~~~~~~~~~~~~~s~~~l~~~f~~rv~~nlhivl~~sp~~~~~r~ 904 (1614)
+-.++.+...|...|..+.+..-=. +. -++..-+.++.+.+|.-.. .
T Consensus 122 nra~p~~q~aLl~~l~e~~vtv~~~-----------------------~~--------~~~~~~f~viaT~Np~e~~--g 168 (329)
T COG0714 122 NRAPPEVQNALLEALEERQVTVPGL-----------------------TT--------IRLPPPFIVIATQNPGEYE--G 168 (329)
T ss_pred ccCCHHHHHHHHHHHhCcEEEECCc-----------------------CC--------cCCCCCCEEEEccCccccC--C
Confidence 7777877777776664432211100 00 2455688888888864321 1
Q ss_pred HhhhCccccccceecccCCCc-HHH
Q psy568 905 RAATSPALFNRCVLNWFGDWS-DTA 928 (1614)
Q Consensus 905 ~~~~~PaL~~~~~i~wf~~W~-~ea 928 (1614)
--....|+..+|.+.-+-+|| .+.
T Consensus 169 ~~~l~eA~ldRf~~~~~v~yp~~~~ 193 (329)
T COG0714 169 TYPLPEALLDRFLLRIYVDYPDSEE 193 (329)
T ss_pred CcCCCHHHHhhEEEEEecCCCCchH
Confidence 112356788888554444566 443
No 381
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=96.37 E-value=0.032 Score=65.75 Aligned_cols=135 Identities=16% Similarity=0.191 Sum_probs=79.5
Q ss_pred HHHHHhcC---CCEEEecCCCCchHHHHHHHHhcCCCC--------------------ceEEEEccc---------CCCH
Q psy568 409 LYTWLAEH---KPLVLCGPPGSGKTMTLLSALRALPDM--------------------EVVSLNFSS---------ATTP 456 (1614)
Q Consensus 409 l~~~l~~~---~~vLL~Gp~GtGKT~lv~~~~~~l~~~--------------------~~~~i~~s~---------~t~~ 456 (1614)
+...+..| +..|++||+|+||++++..+++.+... .+..+.+.. ....
T Consensus 16 l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~i 95 (319)
T PRK08769 16 TVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVI 95 (319)
T ss_pred HHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccH
Confidence 44445444 368999999999999999888755211 012221111 1112
Q ss_pred HHHHhHhhcccceeecCCccccccccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEE
Q psy568 457 ELLLKTFDHYCEYRKTPNGVILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQC 536 (1614)
Q Consensus 457 ~~l~~~~~~~~~~~~~~~g~~~~p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~ 536 (1614)
+.+....+ -....|. .|++=|++||+.+.-. ......+|+ .+|. + .+++.|
T Consensus 96 dqIR~l~~----------~~~~~p~-~g~~kV~iI~~ae~m~-----~~AaNaLLK-tLEE-----P-------p~~~~f 146 (319)
T PRK08769 96 EQVREISQ----------KLALTPQ-YGIAQVVIVDPADAIN-----RAACNALLK-TLEE-----P-------SPGRYL 146 (319)
T ss_pred HHHHHHHH----------HHhhCcc-cCCcEEEEeccHhhhC-----HHHHHHHHH-HhhC-----C-------CCCCeE
Confidence 22222211 1112343 3455667789988632 223455665 4443 1 124566
Q ss_pred EEeecCCCCCCCCCCcccccccccEEEecCCChhHHHHHHH
Q psy568 537 VGACNPPTDPGRKPLSHRFLRHVPVIYVDYPGETSLKQIYG 577 (1614)
Q Consensus 537 iaa~n~~~~~g~~~l~~r~~r~f~~i~i~~p~~~~l~~I~~ 577 (1614)
|-+++.+. .+.+-+.+|+..+.++.|+.++......
T Consensus 147 iL~~~~~~-----~lLpTIrSRCq~i~~~~~~~~~~~~~L~ 182 (319)
T PRK08769 147 WLISAQPA-----RLPATIRSRCQRLEFKLPPAHEALAWLL 182 (319)
T ss_pred EEEECChh-----hCchHHHhhheEeeCCCcCHHHHHHHHH
Confidence 66666554 5888999999999999999988776654
No 382
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=96.36 E-value=0.0068 Score=77.01 Aligned_cols=69 Identities=29% Similarity=0.438 Sum_probs=48.0
Q ss_pred ccCCccEEEeecCCCChHHHHHHHHHHcCCeEEEEEecCCCC--hhcHHHHHHHHHHHhccCCCcEEEEEcCC
Q psy568 754 RQPQGHLLLIGVSGAGKTTLSRFVAFMNGLSVFQIRAHNKYT--GADFDEDLRTVLRRSGCKNEKIAFLLDES 824 (1614)
Q Consensus 754 ~~p~gh~LLvG~~GsGKtsl~rlaA~~~~~~~~~i~~~~~~~--~~df~~~lk~~l~~ag~~~~~~v~ll~d~ 824 (1614)
..|+| +||.||+|||||+++|.+|..++.+++.++.+.-.+ ..+-...++.++..+ ....|.++++||-
T Consensus 86 ~~~~g-iLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~~g~~~~~l~~~f~~a-~~~~p~Il~iDEi 156 (495)
T TIGR01241 86 KIPKG-VLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQA-KKNAPCIIFIDEI 156 (495)
T ss_pred CCCCc-EEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHHHhcccHHHHHHHHHHH-HhcCCCEEEEech
Confidence 44565 999999999999999999999999999876432100 000123456666665 3456788888874
No 383
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.32 E-value=0.0069 Score=68.51 Aligned_cols=90 Identities=17% Similarity=0.311 Sum_probs=50.3
Q ss_pred CCEEEecCCCCchHHHHHHHHhcCC--CCceEEEEcccCCCHHHHHhHhhcccceeecCCccccccccCCceEEEEeccC
Q psy568 417 KPLVLCGPPGSGKTMTLLSALRALP--DMEVVSLNFSSATTPELLLKTFDHYCEYRKTPNGVILSPIQLGKWLVLFCDEI 494 (1614)
Q Consensus 417 ~~vLL~Gp~GtGKT~lv~~~~~~l~--~~~~~~i~~s~~t~~~~l~~~~~~~~~~~~~~~g~~~~p~~~gk~~vlfiDdi 494 (1614)
.+++|.|++|||||.++..++..+. +..+..++. .++...+.............+.... .+.-+++|||+
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~------~~l~~~l~~~~~~~~~~~~~~l~~l--~~~dlLvIDDi 171 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITV------ADIMSAMKDTFSNSETSEEQLLNDL--SNVDLLVIDEI 171 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEH------HHHHHHHHHHHhhccccHHHHHHHh--ccCCEEEEeCC
Confidence 5899999999999999998887653 444555533 3343333221110000000111111 12236777999
Q ss_pred CCCCccccCcccHHHHHHHHHHcC
Q psy568 495 NLPDMDKYATQRVISFLRQLIEQR 518 (1614)
Q Consensus 495 n~p~~d~~g~q~~lelLrqlld~~ 518 (1614)
....... -..++|-++++++
T Consensus 172 g~~~~s~----~~~~~l~~Ii~~R 191 (244)
T PRK07952 172 GVQTESR----YEKVIINQIVDRR 191 (244)
T ss_pred CCCCCCH----HHHHHHHHHHHHH
Confidence 8854332 2345778888864
No 384
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.31 E-value=0.012 Score=73.33 Aligned_cols=71 Identities=30% Similarity=0.479 Sum_probs=54.0
Q ss_pred cCCccEE-EeecCCCChHHHHHHHHHHcCCeEEEEEecCCCChhcHHHH-----------HHHHHHHhccCCCcEEEEEc
Q psy568 755 QPQGHLL-LIGVSGAGKTTLSRFVAFMNGLSVFQIRAHNKYTGADFDED-----------LRTVLRRSGCKNEKIAFLLD 822 (1614)
Q Consensus 755 ~p~gh~L-LvG~~GsGKtsl~rlaA~~~~~~~~~i~~~~~~~~~df~~~-----------lk~~l~~ag~~~~~~v~ll~ 822 (1614)
.-.|++| ||||||+|||||.+-.|...|.+++.+.+..--|.+|.++. +-+.+++||..|. +|++|
T Consensus 347 ~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHRRTYIGamPGrIiQ~mkka~~~NP--v~LLD 424 (782)
T COG0466 347 KLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHRRTYIGAMPGKIIQGMKKAGVKNP--VFLLD 424 (782)
T ss_pred cCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccccccccccCChHHHHHHHHhCCcCC--eEEee
Confidence 4466766 99999999999999999999999999998866666665543 3345677776663 77777
Q ss_pred CCccc
Q psy568 823 ESNVL 827 (1614)
Q Consensus 823 d~~i~ 827 (1614)
+-+-.
T Consensus 425 EIDKm 429 (782)
T COG0466 425 EIDKM 429 (782)
T ss_pred chhhc
Confidence 75433
No 385
>KOG2680|consensus
Probab=96.30 E-value=0.017 Score=64.06 Aligned_cols=75 Identities=24% Similarity=0.290 Sum_probs=52.1
Q ss_pred EEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCC-------CCCCCCCcccccccc
Q psy568 487 LVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPT-------DPGRKPLSHRFLRHV 559 (1614)
Q Consensus 487 ~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~-------~~g~~~l~~r~~r~f 559 (1614)
.|+||||+||...+ .+.+|...++..- ..+ ++.|+|..- ...-+.+|-.|+.|.
T Consensus 290 GVLFIDEvHMLDIE------cFsFlNrAlE~d~------------~Pi-iimaTNrgit~iRGTn~~SphGiP~D~lDR~ 350 (454)
T KOG2680|consen 290 GVLFIDEVHMLDIE------CFSFLNRALENDM------------API-IIMATNRGITRIRGTNYRSPHGIPIDLLDRM 350 (454)
T ss_pred ceEEEeeehhhhhH------HHHHHHHHhhhcc------------CcE-EEEEcCCceEEeecCCCCCCCCCcHHHhhhh
Confidence 68999999996666 5678877776421 011 223333211 123467899999999
Q ss_pred cEEEecCCChhHHHHHHHHHH
Q psy568 560 PVIYVDYPGETSLKQIYGTFS 580 (1614)
Q Consensus 560 ~~i~i~~p~~~~l~~I~~~~~ 580 (1614)
-+|...+.+.+++..|++.-+
T Consensus 351 lII~t~py~~~d~~~IL~iRc 371 (454)
T KOG2680|consen 351 LIISTQPYTEEDIKKILRIRC 371 (454)
T ss_pred heeecccCcHHHHHHHHHhhh
Confidence 999999999999999976543
No 386
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.29 E-value=0.052 Score=61.72 Aligned_cols=82 Identities=18% Similarity=0.235 Sum_probs=47.0
Q ss_pred ccEEEeecCCCChHHHHHHHHHHc---CCeEEEEEecCCCChhcHHHHHHHHHHHhccCCCcEEEEEcCCcccc--c---
Q psy568 758 GHLLLIGVSGAGKTTLSRFVAFMN---GLSVFQIRAHNKYTGADFDEDLRTVLRRSGCKNEKIAFLLDESNVLE--S--- 829 (1614)
Q Consensus 758 gh~LLvG~~GsGKtsl~rlaA~~~---~~~~~~i~~~~~~~~~df~~~lk~~l~~ag~~~~~~v~ll~d~~i~~--~--- 829 (1614)
.+++|.||+|+|||.+++.+|+.. |..+..+++... ..+..++++.+..+ -++++||-+... +
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~---~~~~~~~~~~~~~~------dlliiDdi~~~~~~~~~~ 116 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKR---AWFVPEVLEGMEQL------SLVCIDNIECIAGDELWE 116 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHH---hhhhHHHHHHhhhC------CEEEEeChhhhcCCHHHH
Confidence 479999999999999999877643 455666655431 11122222222221 256667766542 1
Q ss_pred -chHHHHHHhhccCCCCCCC
Q psy568 830 -GFLERMNTLLANGEIPGLF 848 (1614)
Q Consensus 830 -~~le~in~lL~~G~v~~Lf 848 (1614)
.+.+.+|.+..+|...-++
T Consensus 117 ~~lf~l~n~~~e~g~~~li~ 136 (235)
T PRK08084 117 MAIFDLYNRILESGRTRLLI 136 (235)
T ss_pred HHHHHHHHHHHHcCCCeEEE
Confidence 2356667666666543333
No 387
>PRK10869 recombination and repair protein; Provisional
Probab=96.28 E-value=5.8 Score=51.05 Aligned_cols=30 Identities=23% Similarity=0.313 Sum_probs=25.9
Q ss_pred ccCCccEEEeecCCCChHHHHHHHHHHcCC
Q psy568 754 RQPQGHLLLIGVSGAGKTTLSRFVAFMNGL 783 (1614)
Q Consensus 754 ~~p~gh~LLvG~~GsGKtsl~rlaA~~~~~ 783 (1614)
....|--+++|++|+|||.+...+.+++|.
T Consensus 19 ~f~~glnvitGetGaGKS~ildAi~~llG~ 48 (553)
T PRK10869 19 DFQSGMTVITGETGAGKSIAIDALGLCLGG 48 (553)
T ss_pred ecCCCcEEEECCCCCChHHHHHHHHHHhCC
Confidence 345677899999999999999999999874
No 388
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=96.27 E-value=0.027 Score=69.04 Aligned_cols=158 Identities=16% Similarity=0.184 Sum_probs=78.9
Q ss_pred CccEEEeecCCCChHHHHHHHHHHcC---------CeEEEEEecCCCChhcHHHHHHHHHHHhccCCCcEEEEEcCCccc
Q psy568 757 QGHLLLIGVSGAGKTTLSRFVAFMNG---------LSVFQIRAHNKYTGADFDEDLRTVLRRSGCKNEKIAFLLDESNVL 827 (1614)
Q Consensus 757 ~gh~LLvG~~GsGKtsl~rlaA~~~~---------~~~~~i~~~~~~~~~df~~~lk~~l~~ag~~~~~~v~ll~d~~i~ 827 (1614)
.+++++.||+|+|||++++.++.... ..++.+++....+..++...+-..+...|.+. +.....
T Consensus 40 ~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~-------~~~~~~ 112 (365)
T TIGR02928 40 PSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVELANQLRGSGEEV-------PTTGLS 112 (365)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHHHHHHHhhcCCCC-------CCCCCC
Confidence 45799999999999999998876432 45666766544443333333322221111110 000011
Q ss_pred ccchHHHHHHhhccCCCCCCCChhhHHHHHHHhHHHHHHcCCCCCCHHHHHHHHHH----HHh-hcceEEEEECCCChhh
Q psy568 828 ESGFLERMNTLLANGEIPGLFEGDEYTTLMTQCKEGAQREGLMLDSNEELYKWFTQ----QVM-KNLHVVFTMNPSSEGL 902 (1614)
Q Consensus 828 ~~~~le~in~lL~~G~v~~Lf~~eE~~~i~~~~~~~~~~~~~~~~s~~~l~~~f~~----rv~-~nlhivl~~sp~~~~~ 902 (1614)
..+.++.+-..+....-+-++--||.+.+.. ...+.+|..+.- ... .++.+|++.+.. .+
T Consensus 113 ~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~-------------~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~~--~~ 177 (365)
T TIGR02928 113 TSEVFRRLYKELNERGDSLIIVLDEIDYLVG-------------DDDDLLYQLSRARSNGDLDNAKVGVIGISNDL--KF 177 (365)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEECchhhhcc-------------CCcHHHHhHhccccccCCCCCeEEEEEEECCc--ch
Confidence 1122333323332222223333455544431 011223332211 111 356666666543 23
Q ss_pred HHHhhhCccccccc--eecccCCCcHHHHHHHHHHhhc
Q psy568 903 KDRAATSPALFNRC--VLNWFGDWSDTALYQVAKEFTS 938 (1614)
Q Consensus 903 r~~~~~~PaL~~~~--~i~wf~~W~~eaL~~va~~~l~ 938 (1614)
.. +..|.+.+++ ....|.+++.+.+..+....++
T Consensus 178 ~~--~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~ 213 (365)
T TIGR02928 178 RE--NLDPRVKSSLCEEEIIFPPYDAEELRDILENRAE 213 (365)
T ss_pred Hh--hcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHH
Confidence 32 3456666665 3567999999999998887664
No 389
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=96.26 E-value=0.026 Score=72.23 Aligned_cols=80 Identities=23% Similarity=0.392 Sum_probs=50.3
Q ss_pred cc-EEEeecCCCChHHHHHHHHHHcCC------------------------eEEEEEecCCCChhcHHHHHHHHHHHhcc
Q psy568 758 GH-LLLIGVSGAGKTTLSRFVAFMNGL------------------------SVFQIRAHNKYTGADFDEDLRTVLRRSGC 812 (1614)
Q Consensus 758 gh-~LLvG~~GsGKtsl~rlaA~~~~~------------------------~~~~i~~~~~~~~~df~~~lk~~l~~ag~ 812 (1614)
+| .||.||.|+|||++++.+|...++ +++++....+.+..+.++ +..-...+..
T Consensus 38 ~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g~~~dv~eidaas~~~vd~ir~-i~~~v~~~p~ 116 (559)
T PRK05563 38 SHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNGSLMDVIEIDAASNNGVDEIRD-IRDKVKYAPS 116 (559)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCCCCCeEEeeccccCCHHHHHH-HHHHHhhCcc
Confidence 56 577999999999999999876542 455555444444443333 2233333445
Q ss_pred CCCcEEEEEcCCcccccchHHHHHHhhcc
Q psy568 813 KNEKIAFLLDESNVLESGFLERMNTLLAN 841 (1614)
Q Consensus 813 ~~~~~v~ll~d~~i~~~~~le~in~lL~~ 841 (1614)
.++.-|+++|+.+.... +..|.||.+
T Consensus 117 ~~~~kViIIDE~~~Lt~---~a~naLLKt 142 (559)
T PRK05563 117 EAKYKVYIIDEVHMLST---GAFNALLKT 142 (559)
T ss_pred cCCeEEEEEECcccCCH---HHHHHHHHH
Confidence 66777889998665543 345666644
No 390
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=96.25 E-value=5.1 Score=50.14 Aligned_cols=59 Identities=12% Similarity=0.134 Sum_probs=36.9
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy568 999 ITPRHYLDFINHFVKLYREKCSELEEQQLHLNVGLGKIAETVEQVEEMQKSLAVKSQEL 1057 (1614)
Q Consensus 999 ~tp~~yl~~l~~f~~l~~~k~~~~~~~~~~l~~gL~kl~~~~~~v~~l~~~L~~~~~~l 1057 (1614)
+-|...+.+++.|...-.....+....-+.++..-..+.....+..++..+++-++-++
T Consensus 136 l~~~~~r~lLD~f~~~~~~~~~~~~~~y~~w~~~~~~l~~~~~~~~e~~~~~d~L~fq~ 194 (557)
T COG0497 136 LKPELQRQLLDAFAGLEELAQEAYQEAYQAWKQARRELEDLQEKERERAQRADLLQFQL 194 (557)
T ss_pred cChHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888888999888776655544666666666655555555555555555544443333
No 391
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=96.25 E-value=0.013 Score=66.68 Aligned_cols=122 Identities=14% Similarity=0.126 Sum_probs=68.5
Q ss_pred HhcCCCEEEecCCCCchHHHHHHHHhcCCCC--ceE-EEEcccC--CCHHHHHhHhhcccceeec--CC-----------
Q psy568 413 LAEHKPLVLCGPPGSGKTMTLLSALRALPDM--EVV-SLNFSSA--TTPELLLKTFDHYCEYRKT--PN----------- 474 (1614)
Q Consensus 413 l~~~~~vLL~Gp~GtGKT~lv~~~~~~l~~~--~~~-~i~~s~~--t~~~~l~~~~~~~~~~~~~--~~----------- 474 (1614)
+..|+.+++.||+|||||++++.+.+..... ... .+-.+.. .+..+++..+......... +.
T Consensus 13 i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~ 92 (249)
T cd01128 13 IGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVL 92 (249)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHH
Confidence 3468899999999999999999999876432 222 2222333 5666776666221111000 00
Q ss_pred --ccccccccCCceEEEEeccCCCCCc-----------ccc-C-cccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEe
Q psy568 475 --GVILSPIQLGKWLVLFCDEINLPDM-----------DKY-A-TQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGA 539 (1614)
Q Consensus 475 --g~~~~p~~~gk~~vlfiDdin~p~~-----------d~~-g-~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa 539 (1614)
.... ...|+..++|+||+..-.. ... | +..++..++|+++.-+-... + ..+..++|
T Consensus 93 ~~a~~~--~~~G~~vll~iDei~r~a~a~~ev~~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~-~------gsIt~l~T 163 (249)
T cd01128 93 EKAKRL--VEHGKDVVILLDSITRLARAYNTVVPPSGKILSGGVDANALHKPKRFFGAARNIEE-G------GSLTIIAT 163 (249)
T ss_pred HHHHHH--HHCCCCEEEEEECHHHhhhhhhhccccCCCCCCCCcChhhhhhhHHHHHHhcCCCC-C------CceEEeee
Confidence 0001 1247889999999983100 001 2 34467788888876542211 1 24555665
Q ss_pred ecCC
Q psy568 540 CNPP 543 (1614)
Q Consensus 540 ~n~~ 543 (1614)
....
T Consensus 164 ~~~d 167 (249)
T cd01128 164 ALVD 167 (249)
T ss_pred heec
Confidence 5544
No 392
>KOG2004|consensus
Probab=96.23 E-value=0.012 Score=72.61 Aligned_cols=73 Identities=22% Similarity=0.375 Sum_probs=56.1
Q ss_pred HHHhccCCccEE-EeecCCCChHHHHHHHHHHcCCeEEEEEecCCCChhcHHH-----------HHHHHHHHhccCCCcE
Q psy568 750 DRIFRQPQGHLL-LIGVSGAGKTTLSRFVAFMNGLSVFQIRAHNKYTGADFDE-----------DLRTVLRRSGCKNEKI 817 (1614)
Q Consensus 750 ~Ril~~p~gh~L-LvG~~GsGKtsl~rlaA~~~~~~~~~i~~~~~~~~~df~~-----------~lk~~l~~ag~~~~~~ 817 (1614)
.+.-..-+|.+| |+||||+||||++|-.|..+|.++|.+.+..-.|.+|.++ -+-++++++|+.|.
T Consensus 430 ~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHRRTYVGAMPGkiIq~LK~v~t~NP-- 507 (906)
T KOG2004|consen 430 GKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKVKTENP-- 507 (906)
T ss_pred HhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcccceeeeccCChHHHHHHHhhCCCCc--
Confidence 344446678887 9999999999999999999999999999987777777654 34456777776553
Q ss_pred EEEEcCC
Q psy568 818 AFLLDES 824 (1614)
Q Consensus 818 v~ll~d~ 824 (1614)
+||+|+-
T Consensus 508 liLiDEv 514 (906)
T KOG2004|consen 508 LILIDEV 514 (906)
T ss_pred eEEeehh
Confidence 5666654
No 393
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.23 E-value=0.027 Score=72.03 Aligned_cols=28 Identities=36% Similarity=0.541 Sum_probs=24.8
Q ss_pred EEEeecCCCChHHHHHHHHHHcCCeEEE
Q psy568 760 LLLIGVSGAGKTTLSRFVAFMNGLSVFQ 787 (1614)
Q Consensus 760 ~LLvG~~GsGKtsl~rlaA~~~~~~~~~ 787 (1614)
++|.||+|+||||+++++|...+..+.+
T Consensus 113 llL~GP~GsGKTTl~~~la~~l~~~~~E 140 (637)
T TIGR00602 113 LLITGPSGCGKSTTIKILSKELGIQVQE 140 (637)
T ss_pred EEEECCCCCCHHHHHHHHHHHhhhHHHH
Confidence 8899999999999999999988876543
No 394
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=96.22 E-value=0.033 Score=65.87 Aligned_cols=166 Identities=17% Similarity=0.197 Sum_probs=96.4
Q ss_pred chHHHHHHHHHHHHHhccEEEEecCCCCChhhHHHHHHHHHHHhh------------cCCceEEEeCCCCCCcCcccccc
Q psy568 27 GPWMEKVLQLYQISNLNHGLMMVGPSGSGKSTAWKVLLKALERYE------------GVEGVAHIIDPKAISKEALYGVL 94 (1614)
Q Consensus 27 ~~~~~K~~qL~e~~~~r~gVmlvG~~gsGKTt~~~~L~~al~~~~------------~~~~~~~~inPkais~~eLyG~~ 94 (1614)
+.-+....+..+.=++.|+.++.||.|+||+++...+++++.--. +.-.-.+.+.|.....++..-.-
T Consensus 10 ~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~g~~~~~~ 89 (314)
T PRK07399 10 PLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQGKLITAS 89 (314)
T ss_pred HHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccccccccchh
Confidence 345566666666667789999999999999999999999874211 00112344555432222211000
Q ss_pred cCC-C--Ccccc-chHHHHHHHHHhhhc--CCCCCceEEEEccCCChhhhhhhhhhhcCCCccccCCCceeeCCCCceEE
Q psy568 95 DPN-T--REWTD-GLFTHILRRIIDNVR--GEISKRQWIIFDGDVDPEWVENLNSVLDDNKLLTLPNGERLSLPPNIRIM 168 (1614)
Q Consensus 95 d~~-t--~eW~D-Gvls~i~r~~~~~~~--~~~~~~~WivfDG~vd~~WiE~lnsvLDdnk~L~L~nGeri~l~~~~~~i 168 (1614)
+.. . .+..- -+-..-+|+...... .....++.+|+|+. |..=.+.-|.+| |+ +.=||++.||
T Consensus 90 ~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~a-e~m~~~aaNaLL---K~--------LEEPp~~~fI 157 (314)
T PRK07399 90 EAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDA-ETMNEAAANALL---KT--------LEEPGNGTLI 157 (314)
T ss_pred hhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEch-hhcCHHHHHHHH---HH--------HhCCCCCeEE
Confidence 000 0 00111 122234455533211 12346799999983 333333344455 21 2225577899
Q ss_pred EEeccccccCccccccceeEEecCcccchHHHHHHHHHh
Q psy568 169 FEVQDLKYATLATVSRCGMIWFSEDVLSTEMIFENYLSR 207 (1614)
Q Consensus 169 FEv~dL~~ASPAtVSRcgmv~~~~~~l~~~~~~~~~~~~ 207 (1614)
+-+++....-|+..|||-.|.+.+-. ..-+..|+.+
T Consensus 158 Li~~~~~~Ll~TI~SRcq~i~f~~l~---~~~~~~~L~~ 193 (314)
T PRK07399 158 LIAPSPESLLPTIVSRCQIIPFYRLS---DEQLEQVLKR 193 (314)
T ss_pred EEECChHhCcHHHHhhceEEecCCCC---HHHHHHHHHH
Confidence 99999999999999999999997743 3345677765
No 395
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.22 E-value=0.0034 Score=67.75 Aligned_cols=93 Identities=16% Similarity=0.316 Sum_probs=47.0
Q ss_pred HHHhcCCCEEEecCCCCchHHHHHHHHhcC--CCCceEEEEcccCCCHHHHHhHhhcccceeecCCccccccccCCceEE
Q psy568 411 TWLAEHKPLVLCGPPGSGKTMTLLSALRAL--PDMEVVSLNFSSATTPELLLKTFDHYCEYRKTPNGVILSPIQLGKWLV 488 (1614)
Q Consensus 411 ~~l~~~~~vLL~Gp~GtGKT~lv~~~~~~l--~~~~~~~i~~s~~t~~~~l~~~~~~~~~~~~~~~g~~~~p~~~gk~~v 488 (1614)
.++..+.+++|+||+|+|||.++..++..+ .+..+..+++ .++...+........ .......... .=+
T Consensus 42 ~~~~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~------~~L~~~l~~~~~~~~--~~~~~~~l~~--~dl 111 (178)
T PF01695_consen 42 EFIENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITA------SDLLDELKQSRSDGS--YEELLKRLKR--VDL 111 (178)
T ss_dssp -S-SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEH------HHHHHHHHCCHCCTT--HCHHHHHHHT--SSC
T ss_pred CCcccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeec------Cceeccccccccccc--hhhhcCcccc--ccE
Confidence 345678999999999999999998887644 3555666654 345555543211000 0111222111 124
Q ss_pred EEeccCCCCCccccCcccHHHHHHH
Q psy568 489 LFCDEINLPDMDKYATQRVISFLRQ 513 (1614)
Q Consensus 489 lfiDdin~p~~d~~g~q~~lelLrq 513 (1614)
++|||+-.-..+.++.....++|..
T Consensus 112 LilDDlG~~~~~~~~~~~l~~ii~~ 136 (178)
T PF01695_consen 112 LILDDLGYEPLSEWEAELLFEIIDE 136 (178)
T ss_dssp EEEETCTSS---HHHHHCTHHHHHH
T ss_pred ecccccceeeecccccccchhhhhH
Confidence 5569998755554444444444433
No 396
>PHA02774 E1; Provisional
Probab=96.21 E-value=0.024 Score=70.14 Aligned_cols=130 Identities=21% Similarity=0.281 Sum_probs=75.8
Q ss_pred hHHHHHHHHHhc---CCCEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCCHHHHHhHhhcccceeecCCcccccc
Q psy568 404 RHESLLYTWLAE---HKPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTPELLLKTFDHYCEYRKTPNGVILSP 480 (1614)
Q Consensus 404 r~~~ll~~~l~~---~~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~~~~l~~~~~~~~~~~~~~~g~~~~p 480 (1614)
.....+..+++. ...++++||||||||.++..+++.+.+..+..+|..+. -.+.|
T Consensus 419 ~fl~~lk~~l~~~PKknciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~~s~----------------------FwLqp 476 (613)
T PHA02774 419 SFLTALKDFLKGIPKKNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNSKSH----------------------FWLQP 476 (613)
T ss_pred HHHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEECccc----------------------cccch
Confidence 344456666653 23699999999999999999999886655555664211 11334
Q ss_pred ccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeC-CCCceEeecCeEEEEeecCCCCCCCCCCccc---cc
Q psy568 481 IQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRP-ADKQWVSLERIQCVGACNPPTDPGRKPLSHR---FL 556 (1614)
Q Consensus 481 ~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~-~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r---~~ 556 (1614)
....+ ++++||+-.+ ...-.-+.||.++|...+-.. +-.....+..--+|.|+|.... -.++ |.
T Consensus 477 l~d~k--i~vlDD~t~~-----~w~y~d~~Lrn~LdG~~v~lD~Khk~~~q~k~pPlIITSN~d~~-----~~~~~~yL~ 544 (613)
T PHA02774 477 LADAK--IALLDDATHP-----CWDYIDTYLRNALDGNPVSIDCKHKAPVQIKCPPLLITSNIDVK-----AEDRYKYLH 544 (613)
T ss_pred hccCC--EEEEecCcch-----HHHHHHHHHHHHcCCCcceeeecccCcccccCCCEEEecCCCcc-----cchhhHHhh
Confidence 43233 3445999543 112244579999998754432 2222233333446788986531 1233 33
Q ss_pred ccccEEEecCC
Q psy568 557 RHVPVIYVDYP 567 (1614)
Q Consensus 557 r~f~~i~i~~p 567 (1614)
+|..++.++.|
T Consensus 545 sRi~~f~F~n~ 555 (613)
T PHA02774 545 SRITVFEFPNP 555 (613)
T ss_pred hhEEEEECCCC
Confidence 56666666644
No 397
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.20 E-value=0.041 Score=64.69 Aligned_cols=147 Identities=16% Similarity=0.199 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHhccEEEEecCCCCChhhHHHHHHHHHHHhh-----------------cCCceEEEeCCCCCCcCccccc
Q psy568 31 EKVLQLYQISNLNHGLMMVGPSGSGKSTAWKVLLKALERYE-----------------GVEGVAHIIDPKAISKEALYGV 93 (1614)
Q Consensus 31 ~K~~qL~e~~~~r~gVmlvG~~gsGKTt~~~~L~~al~~~~-----------------~~~~~~~~inPkais~~eLyG~ 93 (1614)
++..+.++.=+..|+.++.||.|.||+++.+.+++++.-.. |.-...+.+.|..- |.
T Consensus 13 ~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~------~~ 86 (319)
T PRK06090 13 QNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKE------GK 86 (319)
T ss_pred HHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcC------CC
Confidence 44556666678899999999999999999999999984211 01112445555210 00
Q ss_pred ccCCCCccccchHHHHHHHHHhhh--cCCCCCceEEEEccCCChhhhhhhhhhhcCCCccccCCCceeeCCCCceEEEEe
Q psy568 94 LDPNTREWTDGLFTHILRRIIDNV--RGEISKRQWIIFDGDVDPEWVENLNSVLDDNKLLTLPNGERLSLPPNIRIMFEV 171 (1614)
Q Consensus 94 ~d~~t~eW~DGvls~i~r~~~~~~--~~~~~~~~WivfDG~vd~~WiE~lnsvLDdnk~L~L~nGeri~l~~~~~~iFEv 171 (1614)
-|-..-+|+..... ......++.+|+|. +|..=.+.-|++| |+|- .-|+++.||+-+
T Consensus 87 ----------~I~vdqiR~l~~~~~~~~~~~~~kV~iI~~-ae~m~~~AaNaLL---KtLE-------EPp~~t~fiL~t 145 (319)
T PRK06090 87 ----------SITVEQIRQCNRLAQESSQLNGYRLFVIEP-ADAMNESASNALL---KTLE-------EPAPNCLFLLVT 145 (319)
T ss_pred ----------cCCHHHHHHHHHHHhhCcccCCceEEEecc-hhhhCHHHHHHHH---HHhc-------CCCCCeEEEEEE
Confidence 01122345543221 11223578888887 5666667777888 4443 246678899999
Q ss_pred ccccccCccccccceeEEecCcccchHHHHHHHHHh
Q psy568 172 QDLKYATLATVSRCGMIWFSEDVLSTEMIFENYLSR 207 (1614)
Q Consensus 172 ~dL~~ASPAtVSRcgmv~~~~~~l~~~~~~~~~~~~ 207 (1614)
++....-|..+|||-.+.+.+-. ...+..|+..
T Consensus 146 ~~~~~lLpTI~SRCq~~~~~~~~---~~~~~~~L~~ 178 (319)
T PRK06090 146 HNQKRLLPTIVSRCQQWVVTPPS---TAQAMQWLKG 178 (319)
T ss_pred CChhhChHHHHhcceeEeCCCCC---HHHHHHHHHH
Confidence 99999999999999999998654 4456778754
No 398
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=96.19 E-value=0.041 Score=66.39 Aligned_cols=156 Identities=17% Similarity=0.184 Sum_probs=96.5
Q ss_pred hHHHHHHHHHHHHHhccEEEEecCCCCChhhHHHHHHHHHHHhh--cCC--------------------------ceEEE
Q psy568 28 PWMEKVLQLYQISNLNHGLMMVGPSGSGKSTAWKVLLKALERYE--GVE--------------------------GVAHI 79 (1614)
Q Consensus 28 ~~~~K~~qL~e~~~~r~gVmlvG~~gsGKTt~~~~L~~al~~~~--~~~--------------------------~~~~~ 79 (1614)
.-+....+.+..=+..|+.++.||+|+||+++...+++.+.--. +.. ...++
T Consensus 26 ~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~i~~~~HPDl~~ 105 (365)
T PRK07471 26 AAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARRIAAGAHGGLLT 105 (365)
T ss_pred HHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHHHHHccCCCCeEE
Confidence 44455666677778899999999999999999999999984211 000 01222
Q ss_pred eCCCCCCcCcccccccCCCCccccchHHHHHHHHHhhhc--CCCCCceEEEEccCCChhhhhhhhhhhcCCCccccCCCc
Q psy568 80 IDPKAISKEALYGVLDPNTREWTDGLFTHILRRIIDNVR--GEISKRQWIIFDGDVDPEWVENLNSVLDDNKLLTLPNGE 157 (1614)
Q Consensus 80 inPkais~~eLyG~~d~~t~eW~DGvls~i~r~~~~~~~--~~~~~~~WivfDG~vd~~WiE~lnsvLDdnk~L~L~nGe 157 (1614)
|.|.. +..+...+..|----+|+...... .....++.+|+|. +|..=.++.|.+| |+|.=
T Consensus 106 i~~~~----------~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDe-ad~m~~~aanaLL---K~LEe---- 167 (365)
T PRK07471 106 LERSW----------NEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDT-ADEMNANAANALL---KVLEE---- 167 (365)
T ss_pred Eeccc----------ccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEec-hHhcCHHHHHHHH---HHHhc----
Confidence 33221 111112233344455676654322 1223567889998 4444446777777 33332
Q ss_pred eeeCCCCceEEEEeccccccCccccccceeEEecCcccchHHHHHHHHHh
Q psy568 158 RLSLPPNIRIMFEVQDLKYATLATVSRCGMIWFSEDVLSTEMIFENYLSR 207 (1614)
Q Consensus 158 ri~l~~~~~~iFEv~dL~~ASPAtVSRcgmv~~~~~~l~~~~~~~~~~~~ 207 (1614)
.|+++.||+-+++....-|...|||-.|.+.+-. ..-+..|+..
T Consensus 168 ---pp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~---~~~i~~~L~~ 211 (365)
T PRK07471 168 ---PPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLA---PEDVIDALAA 211 (365)
T ss_pred ---CCCCeEEEEEECCchhchHHhhccceEEECCCCC---HHHHHHHHHH
Confidence 2456677888888888888889999999987753 3345667754
No 399
>KOG2543|consensus
Probab=96.19 E-value=0.087 Score=61.16 Aligned_cols=152 Identities=18% Similarity=0.160 Sum_probs=80.3
Q ss_pred HHHHHHHhcC-----CCEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCCHHHHHhHhhccc---ceee-cCCc--
Q psy568 407 SLLYTWLAEH-----KPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTPELLLKTFDHYC---EYRK-TPNG-- 475 (1614)
Q Consensus 407 ~ll~~~l~~~-----~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~~~~l~~~~~~~~---~~~~-~~~g-- 475 (1614)
..+..++..+ .+|.|.|.+|||||.+++++++.. +.+.+.+++-.-.+...+...+-... .+-. ..+|
T Consensus 16 ~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~-n~~~vw~n~~ecft~~~lle~IL~~~~~~d~dg~~~~~~~ 94 (438)
T KOG2543|consen 16 RRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL-NLENVWLNCVECFTYAILLEKILNKSQLADKDGDKVEGDA 94 (438)
T ss_pred HHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc-CCcceeeehHHhccHHHHHHHHHHHhccCCCchhhhhhHH
Confidence 3444555433 245899999999999999999987 77777888776666554443332111 1100 0011
Q ss_pred ----------ccc-ccccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCC
Q psy568 476 ----------VIL-SPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPT 544 (1614)
Q Consensus 476 ----------~~~-~p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~ 544 (1614)
+.+ ...+.++.+.+++|.++... | +++. +|..+++-...- ..+.+.|+-...+..
T Consensus 95 en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lr-D-~~a~----ll~~l~~L~el~--------~~~~i~iils~~~~e 160 (438)
T KOG2543|consen 95 ENFSDFIYLLVQWPAATNRDQKVFLILDNADALR-D-MDAI----LLQCLFRLYELL--------NEPTIVIILSAPSCE 160 (438)
T ss_pred HHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhh-c-cchH----HHHHHHHHHHHh--------CCCceEEEEeccccH
Confidence 000 11223467889999988643 2 1222 233333221111 112344443332221
Q ss_pred CCCCCCCcccccccc--cEEEecCCChhHHHHHHHH
Q psy568 545 DPGRKPLSHRFLRHV--PVIYVDYPGETSLKQIYGT 578 (1614)
Q Consensus 545 ~~g~~~l~~r~~r~f--~~i~i~~p~~~~l~~I~~~ 578 (1614)
. .-..+. .++ .++++|.++.+++..|+..
T Consensus 161 ~----~y~~n~-g~~~i~~l~fP~Ys~~e~~~Il~~ 191 (438)
T KOG2543|consen 161 K----QYLINT-GTLEIVVLHFPQYSVEETQVILSR 191 (438)
T ss_pred H----Hhhccc-CCCCceEEecCCCCHHHHHHHHhc
Confidence 0 001111 122 2678899999999999754
No 400
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=96.19 E-value=0.014 Score=64.20 Aligned_cols=126 Identities=21% Similarity=0.262 Sum_probs=73.7
Q ss_pred hHHHHH-HHHHhcCCCEEEecCCCCchHHHHHHHHhcC-----CCCceEEEEcccC---CCHHHHHhHhhcccceee-cC
Q psy568 404 RHESLL-YTWLAEHKPLVLCGPPGSGKTMTLLSALRAL-----PDMEVVSLNFSSA---TTPELLLKTFDHYCEYRK-TP 473 (1614)
Q Consensus 404 r~~~ll-~~~l~~~~~vLL~Gp~GtGKT~lv~~~~~~l-----~~~~~~~i~~s~~---t~~~~l~~~~~~~~~~~~-~~ 473 (1614)
|.+.-+ ...+.+..|+||.||+|.|||-+++.+.... ....++.+||..- +.-+.+.|...+.+.-.+ .+
T Consensus 195 rmieqierva~rsr~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~~r 274 (531)
T COG4650 195 RMIEQIERVAIRSRAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARESR 274 (531)
T ss_pred HHHHHHHHHHhhccCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhhccccccchhhh
Confidence 444333 3456789999999999999999987766321 1456788888632 233455555544332211 12
Q ss_pred CccccccccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEee
Q psy568 474 NGVILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGAC 540 (1614)
Q Consensus 474 ~g~~~~p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~ 540 (1614)
.|. +..+ .-..+|+|||.-...| . ..+|..-++.+.||...... ..-.++++||-+
T Consensus 275 ~gl-lrsa---dggmlfldeigelgad-----e-qamllkaieekrf~pfgsdr-~v~sdfqliagt 330 (531)
T COG4650 275 EGL-LRSA---DGGMLFLDEIGELGAD-----E-QAMLLKAIEEKRFYPFGSDR-QVSSDFQLIAGT 330 (531)
T ss_pred hhh-hccC---CCceEehHhhhhcCcc-----H-HHHHHHHHHhhccCCCCCcc-ccccchHHhhhh
Confidence 233 3322 2256889999765444 2 34455666777888643221 122477777644
No 401
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=96.17 E-value=0.05 Score=67.49 Aligned_cols=145 Identities=17% Similarity=0.263 Sum_probs=77.3
Q ss_pred ccEEEeecCCCChHHHHHHHHHHc---CCeEEEEEecCCCChhcHHHHHHHHHHHhc------cCCCcEEEEEcCCcccc
Q psy568 758 GHLLLIGVSGAGKTTLSRFVAFMN---GLSVFQIRAHNKYTGADFDEDLRTVLRRSG------CKNEKIAFLLDESNVLE 828 (1614)
Q Consensus 758 gh~LLvG~~GsGKtsl~rlaA~~~---~~~~~~i~~~~~~~~~df~~~lk~~l~~ag------~~~~~~v~ll~d~~i~~ 828 (1614)
-+++|.|++|+|||.|++.+|... |..+..++. .+|...+...+.... .....-++++||-|...
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~------~~f~~~~~~~l~~~~~~~f~~~~~~~dvLiIDDiq~l~ 215 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRS------ELFTEHLVSAIRSGEMQRFRQFYRNVDALFIEDIEVFS 215 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeH------HHHHHHHHHHHhcchHHHHHHHcccCCEEEEcchhhhc
Confidence 359999999999999999988753 667776653 334444433332100 01233478888866542
Q ss_pred ------cchHHHHHHhhccCCCCCCCChhhHHHHHHHhHHHHHHcCCCCCCHHHHHHHHHHHHhhcce--EEEEECCCCh
Q psy568 829 ------SGFLERMNTLLANGEIPGLFEGDEYTTLMTQCKEGAQREGLMLDSNEELYKWFTQQVMKNLH--VVFTMNPSSE 900 (1614)
Q Consensus 829 ------~~~le~in~lL~~G~v~~Lf~~eE~~~i~~~~~~~~~~~~~~~~s~~~l~~~f~~rv~~nlh--ivl~~sp~~~ 900 (1614)
++++..+|.+...|- +-+++. +....-+.-+-.|+++.|+ +++-+.|-..
T Consensus 216 ~k~~~qeelf~l~N~l~~~~k-~IIlts---------------------~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~ 273 (445)
T PRK12422 216 GKGATQEEFFHTFNSLHTEGK-LIVISS---------------------TCAPQDLKAMEERLISRFEWGIAIPLHPLTK 273 (445)
T ss_pred CChhhHHHHHHHHHHHHHCCC-cEEEec---------------------CCCHHHHhhhHHHHHhhhcCCeEEecCCCCH
Confidence 123344444443331 222221 1222223345678888886 6666665544
Q ss_pred hhHHHhhhCccccccceecccCCCcHHHHHHHHHHh
Q psy568 901 GLKDRAATSPALFNRCVLNWFGDWSDTALYQVAKEF 936 (1614)
Q Consensus 901 ~~r~~~~~~PaL~~~~~i~wf~~W~~eaL~~va~~~ 936 (1614)
..|..+ |...|.- .--.+|++++..+|.++
T Consensus 274 e~r~~i-----L~~k~~~-~~~~l~~evl~~la~~~ 303 (445)
T PRK12422 274 EGLRSF-----LERKAEA-LSIRIEETALDFLIEAL 303 (445)
T ss_pred HHHHHH-----HHHHHHH-cCCCCCHHHHHHHHHhc
Confidence 333221 1111111 11357888888888755
No 402
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=96.15 E-value=0.0061 Score=72.17 Aligned_cols=135 Identities=21% Similarity=0.299 Sum_probs=89.1
Q ss_pred hc-cEEEEecCCCCChhhHHHHHHHHHHHhhcCCc-------------e-------------EEEeCCCCCCcCcccccc
Q psy568 42 LN-HGLMMVGPSGSGKSTAWKVLLKALERYEGVEG-------------V-------------AHIIDPKAISKEALYGVL 94 (1614)
Q Consensus 42 ~r-~gVmlvG~~gsGKTt~~~~L~~al~~~~~~~~-------------~-------------~~~inPkais~~eLyG~~ 94 (1614)
.. |+|++.|++|+||||+.+.|++.+..+...+. . -.+=-|-.+|.+.|+|..
T Consensus 27 ~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~ 106 (334)
T PRK13407 27 PGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPEDCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGAL 106 (334)
T ss_pred cCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccCCcccccccCCcccccCCccccCCCCCCcceeecch
Confidence 44 89999999999999999999999843211100 0 001135567788899987
Q ss_pred cCC----CC--ccccchHHHHHHHHHhhhcCCCCCceEEEEcc--CCChhhhhhhhhhhcCCCccccCCCceeeCCCCce
Q psy568 95 DPN----TR--EWTDGLFTHILRRIIDNVRGEISKRQWIIFDG--DVDPEWVENLNSVLDDNKLLTLPNGERLSLPPNIR 166 (1614)
Q Consensus 95 d~~----t~--eW~DGvls~i~r~~~~~~~~~~~~~~WivfDG--~vd~~WiE~lnsvLDdnk~L~L~nGeri~l~~~~~ 166 (1614)
|.. ++ .+..|.+... ..--+++|. ..++.-...|-.+|+++....-..|...++|..+.
T Consensus 107 d~~~~l~~g~~~~~~G~l~~A-------------~~GiL~lDEInrl~~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfi 173 (334)
T PRK13407 107 DIERALTRGEKAFEPGLLARA-------------NRGYLYIDEVNLLEDHIVDLLLDVAQSGENVVEREGLSIRHPARFV 173 (334)
T ss_pred hhhhhhhcCCeeecCCceEEc-------------CCCeEEecChHhCCHHHHHHHHHHHHcCCeEEEECCeEEecCCCEE
Confidence 643 23 3556654211 123577785 46677777777888887765567888888888777
Q ss_pred EEEEecccc-ccCccccccceeEE
Q psy568 167 IMFEVQDLK-YATLATVSRCGMIW 189 (1614)
Q Consensus 167 ~iFEv~dL~-~ASPAtVSRcgmv~ 189 (1614)
++.-..... ...|+...|+++..
T Consensus 174 viAt~NP~e~~l~~aLldRF~~~v 197 (334)
T PRK13407 174 LVGSGNPEEGELRPQLLDRFGLSV 197 (334)
T ss_pred EEecCCcccCCCCHHHHhhcceEE
Confidence 666544333 36788899998643
No 403
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.13 E-value=0.019 Score=63.38 Aligned_cols=85 Identities=20% Similarity=0.317 Sum_probs=46.9
Q ss_pred EEEEecCCCCChhhHHHHHHHHHHHhhcCCceEEEeCCCCCCcCcccccccCCCCccccchHHHHHHHHHhhhcCCCCCc
Q psy568 45 GLMMVGPSGSGKSTAWKVLLKALERYEGVEGVAHIIDPKAISKEALYGVLDPNTREWTDGLFTHILRRIIDNVRGEISKR 124 (1614)
Q Consensus 45 gVmlvG~~gsGKTt~~~~L~~al~~~~~~~~~~~~inPkais~~eLyG~~d~~t~eW~DGvls~i~r~~~~~~~~~~~~~ 124 (1614)
-|+|+|||||||||+.+.|.+.+....+ ..+..+=+|-.+....-.+.+....-.+....+...++.+.. ...
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~-~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr------~~p 75 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKT-HHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALR------QDP 75 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCC-cEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhc------CCc
Confidence 4789999999999999998887753211 111222233322221111211110012233446666666532 135
Q ss_pred eEEEEccCCChh
Q psy568 125 QWIIFDGDVDPE 136 (1614)
Q Consensus 125 ~WivfDG~vd~~ 136 (1614)
.+|++|-+-|++
T Consensus 76 d~ii~gEird~e 87 (198)
T cd01131 76 DVILVGEMRDLE 87 (198)
T ss_pred CEEEEcCCCCHH
Confidence 799999988875
No 404
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=96.12 E-value=0.036 Score=62.26 Aligned_cols=95 Identities=21% Similarity=0.182 Sum_probs=65.8
Q ss_pred hhhHHHHHHHHHHHHHHhccCCccEEEeecCCCChHHHHHHHHHHcCCeEEEEEecCCCChhcHHHHHHHHHHHhccCCC
Q psy568 736 LVLFDEVLDHVLRIDRIFRQPQGHLLLIGVSGAGKTTLSRFVAFMNGLSVFQIRAHNKYTGADFDEDLRTVLRRSGCKNE 815 (1614)
Q Consensus 736 lvlf~~~i~hi~ri~Ril~~p~gh~LLvG~~GsGKtsl~rlaA~~~~~~~~~i~~~~~~~~~df~~~lk~~l~~ag~~~~ 815 (1614)
+|+.+-.=.-..-+...+.+..| ..+.||.|+|||..+|-+|.+.|..++..+.+..++......-++.+.. +
T Consensus 12 lv~Tplt~r~~~~l~~al~~~~~-~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~~~~l~ril~G~~~-~----- 84 (231)
T PF12774_consen 12 LVITPLTDRCFLTLTQALSLNLG-GALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMDYQSLSRILKGLAQ-S----- 84 (231)
T ss_dssp ----HHHHHHHHHHHHHHCTTTE-EEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-HHHHHHHHHHHHH-H-----
T ss_pred ceechHHHHHHHHHHHHhccCCC-CCCcCCCCCCchhHHHHHHHHhCCeEEEecccccccHHHHHHHHHHHhh-c-----
Confidence 44433333334456667777777 5689999999999999999999999999999999887655554444433 2
Q ss_pred cEEEEEcCCcccccchHHHHHH
Q psy568 816 KIAFLLDESNVLESGFLERMNT 837 (1614)
Q Consensus 816 ~~v~ll~d~~i~~~~~le~in~ 837 (1614)
+.|..+|+-+-.+.+.|..|-.
T Consensus 85 GaW~cfdefnrl~~~vLS~i~~ 106 (231)
T PF12774_consen 85 GAWLCFDEFNRLSEEVLSVISQ 106 (231)
T ss_dssp T-EEEEETCCCSSHHHHHHHHH
T ss_pred CchhhhhhhhhhhHHHHHHHHH
Confidence 4799999998888888766553
No 405
>KOG0729|consensus
Probab=96.10 E-value=0.032 Score=60.71 Aligned_cols=44 Identities=32% Similarity=0.457 Sum_probs=35.5
Q ss_pred HHHHHHHHH-hccCCccEEEeecCCCChHHHHHHHHHHcCCeEEEE
Q psy568 744 DHVLRIDRI-FRQPQGHLLLIGVSGAGKTTLSRFVAFMNGLSVFQI 788 (1614)
Q Consensus 744 ~hi~ri~Ri-l~~p~gh~LLvG~~GsGKtsl~rlaA~~~~~~~~~i 788 (1614)
-|..|..+. +.-|.| +||.||+|+|||-++|.+|.-.+..++.+
T Consensus 198 l~perfv~lgidppkg-vllygppgtgktl~aravanrtdacfirv 242 (435)
T KOG0729|consen 198 LHPERFVNLGIDPPKG-VLLYGPPGTGKTLCARAVANRTDACFIRV 242 (435)
T ss_pred cCHHHHhhcCCCCCCc-eEEeCCCCCchhHHHHHHhcccCceEEee
Confidence 355566555 556777 99999999999999999999888877765
No 406
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=96.09 E-value=0.018 Score=67.92 Aligned_cols=147 Identities=15% Similarity=0.122 Sum_probs=77.7
Q ss_pred HHHHHHh---cCCCEEEecCCCCchHHHHHHHHhc--CCC-C-ceEEEEcccCCCHHHHHhHhhcccceeecC--C----
Q psy568 408 LLYTWLA---EHKPLVLCGPPGSGKTMTLLSALRA--LPD-M-EVVSLNFSSATTPELLLKTFDHYCEYRKTP--N---- 474 (1614)
Q Consensus 408 ll~~~l~---~~~~vLL~Gp~GtGKT~lv~~~~~~--l~~-~-~~~~i~~s~~t~~~~l~~~~~~~~~~~~~~--~---- 474 (1614)
+.+.+.. ..+-|.|+|++|+|||+++..+++. ..+ . .++.++++...+...+...+-..+...... .
T Consensus 8 l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 87 (287)
T PF00931_consen 8 LKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDI 87 (287)
T ss_dssp HHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSH
T ss_pred HHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 3444444 4567889999999999999998876 222 2 245778877666555555443333222100 0
Q ss_pred ----ccccccccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCC
Q psy568 475 ----GVILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKP 550 (1614)
Q Consensus 475 ----g~~~~p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~ 550 (1614)
..+..-. .++++++++||+.-+. .++-++..+-. ...+..+|.|+... .
T Consensus 88 ~~~~~~l~~~L-~~~~~LlVlDdv~~~~--------~~~~l~~~~~~------------~~~~~kilvTTR~~------~ 140 (287)
T PF00931_consen 88 EELQDQLRELL-KDKRCLLVLDDVWDEE--------DLEELREPLPS------------FSSGSKILVTTRDR------S 140 (287)
T ss_dssp HHHHHHHHHHH-CCTSEEEEEEEE-SHH--------HH-------HC------------HHSS-EEEEEESCG------G
T ss_pred ccccccchhhh-ccccceeeeeeecccc--------ccccccccccc------------cccccccccccccc------c
Confidence 0011111 2446888889987621 11112221110 01246677777542 2
Q ss_pred CcccccccccEEEecCCChhHHHHHHHHHHH
Q psy568 551 LSHRFLRHVPVIYVDYPGETSLKQIYGTFSR 581 (1614)
Q Consensus 551 l~~r~~r~f~~i~i~~p~~~~l~~I~~~~~~ 581 (1614)
+...+.....++.++..+.++-..+|.....
T Consensus 141 v~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~ 171 (287)
T PF00931_consen 141 VAGSLGGTDKVIELEPLSEEEALELFKKRAG 171 (287)
T ss_dssp GGTTHHSCEEEEECSS--HHHHHHHHHHHHT
T ss_pred ccccccccccccccccccccccccccccccc
Confidence 3333333367889999999998888877644
No 407
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.09 E-value=0.013 Score=65.90 Aligned_cols=80 Identities=26% Similarity=0.416 Sum_probs=56.2
Q ss_pred HHHHHHHHH-----hccCCccEEEeecCCCChHHHHHHHHHHcCCeEEEEEec----CCCChhcHHHHHHHHHHHhccC-
Q psy568 744 DHVLRIDRI-----FRQPQGHLLLIGVSGAGKTTLSRFVAFMNGLSVFQIRAH----NKYTGADFDEDLRTVLRRSGCK- 813 (1614)
Q Consensus 744 ~hi~ri~Ri-----l~~p~gh~LLvG~~GsGKtsl~rlaA~~~~~~~~~i~~~----~~~~~~df~~~lk~~l~~ag~~- 813 (1614)
.|.-|+.-. +....+|+||+||+|||||-|++-+|.+++.++.--..+ .+|-..|-.+-|.++++.|-.+
T Consensus 79 NHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGEDVENillkLlqaadydV 158 (408)
T COG1219 79 NHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDV 158 (408)
T ss_pred hHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccchhHHHHHHHHHHHcccCH
Confidence 455555432 334567999999999999999999999999998765433 3466777777777777776432
Q ss_pred --CCcEEEEEcC
Q psy568 814 --NEKIAFLLDE 823 (1614)
Q Consensus 814 --~~~~v~ll~d 823 (1614)
.++-.+++|+
T Consensus 159 ~rAerGIIyIDE 170 (408)
T COG1219 159 ERAERGIIYIDE 170 (408)
T ss_pred HHHhCCeEEEec
Confidence 2334455555
No 408
>PHA02562 46 endonuclease subunit; Provisional
Probab=96.08 E-value=2.8 Score=54.64 Aligned_cols=74 Identities=19% Similarity=0.315 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhh
Q psy568 1261 ETKDLITQLEKSIASYKDEYAQLIAQATAIKTDLDNVQAKFYEYAQLIAQATAIKTDLDNVQAKVERSMALLKSLGIERE 1340 (1614)
Q Consensus 1261 ~~~~~l~~~e~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~rl~~a~~l~~~L~~e~~ 1340 (1614)
+...++.+++.++...+..+..+..+...++.+++.++.... .++.++..+..++..+..-...+..++.
T Consensus 334 ~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~----------~~~~~l~~l~~~l~~~~~~~~~~~ke~~ 403 (562)
T PHA02562 334 EQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFV----------DNAEELAKLQDELDKIVKTKSELVKEKY 403 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----------chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444433333221 2245566666677766766777777766
Q ss_pred hHHH
Q psy568 1341 RWEA 1344 (1614)
Q Consensus 1341 rW~~ 1344 (1614)
+|..
T Consensus 404 ~~~~ 407 (562)
T PHA02562 404 HRGI 407 (562)
T ss_pred HHHH
Confidence 6643
No 409
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.07 E-value=13 Score=53.32 Aligned_cols=20 Identities=35% Similarity=0.541 Sum_probs=17.4
Q ss_pred CEEEecCCCCchHHHHHHHH
Q psy568 418 PLVLCGPPGSGKTMTLLSAL 437 (1614)
Q Consensus 418 ~vLL~Gp~GtGKT~lv~~~~ 437 (1614)
-++|+||.|+|||+++..+.
T Consensus 30 ~~~I~G~NGaGKTTil~ai~ 49 (1311)
T TIGR00606 30 LTILVGPNGAGKTTIIECLK 49 (1311)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 36899999999999988774
No 410
>PRK07261 topology modulation protein; Provisional
Probab=96.06 E-value=0.0088 Score=64.30 Aligned_cols=22 Identities=41% Similarity=0.539 Sum_probs=20.2
Q ss_pred EEEecCCCCChhhHHHHHHHHH
Q psy568 46 LMMVGPSGSGKSTAWKVLLKAL 67 (1614)
Q Consensus 46 VmlvG~~gsGKTt~~~~L~~al 67 (1614)
|+|+|+|||||||+.+.|++.+
T Consensus 3 i~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 7999999999999999998765
No 411
>KOG2228|consensus
Probab=96.06 E-value=0.01 Score=67.33 Aligned_cols=150 Identities=17% Similarity=0.180 Sum_probs=76.4
Q ss_pred hcCCCEEEecCCCCchHHHHHHHHhc--CCCCceE--EEEcccCCCHHHH---HhHhhcccceeecCCccccc-------
Q psy568 414 AEHKPLVLCGPPGSGKTMTLLSALRA--LPDMEVV--SLNFSSATTPELL---LKTFDHYCEYRKTPNGVILS------- 479 (1614)
Q Consensus 414 ~~~~~vLL~Gp~GtGKT~lv~~~~~~--l~~~~~~--~i~~s~~t~~~~l---~~~~~~~~~~~~~~~g~~~~------- 479 (1614)
..+..|+++||.|+|||.++...+.. .-+.+++ .+|..-+++--.+ ...+...+......-|.+..
T Consensus 47 gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~al~~I~rql~~e~~~~~k~~gsfte~l~~lL~ 126 (408)
T KOG2228|consen 47 GESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIALKGITRQLALELNRIVKSFGSFTENLSKLLE 126 (408)
T ss_pred cCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHHHHHHHHHHHHHHhhhheeecccchhHHHHHH
Confidence 45689999999999999999888865 2344554 4444444422122 22222222211111133221
Q ss_pred -----cccCCceEEEEeccCCCCCccccCcccH-HHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCCCcc
Q psy568 480 -----PIQLGKWLVLFCDEINLPDMDKYATQRV-ISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSH 553 (1614)
Q Consensus 480 -----p~~~gk~~vlfiDdin~p~~d~~g~q~~-lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~ 553 (1614)
-...+..+++.+||+++ -.++. ..+|--+.|--. . .-..+-+||.+..-. --.-|-.
T Consensus 127 ~L~~~~~~t~~~ViFIldEfDl------f~~h~rQtllYnlfDisq----s-----~r~Piciig~Ttrld--~lE~LEK 189 (408)
T KOG2228|consen 127 ALKKGDETTSGKVIFILDEFDL------FAPHSRQTLLYNLFDISQ----S-----ARAPICIIGVTTRLD--ILELLEK 189 (408)
T ss_pred HHhcCCCCCCceEEEEeehhhc------cccchhhHHHHHHHHHHh----h-----cCCCeEEEEeecccc--HHHHHHH
Confidence 01123346666678988 22222 123333333210 0 012466677665432 1223556
Q ss_pred ccccccc--EEEecC-CChhHHHHHHHHHH
Q psy568 554 RFLRHVP--VIYVDY-PGETSLKQIYGTFS 580 (1614)
Q Consensus 554 r~~r~f~--~i~i~~-p~~~~l~~I~~~~~ 580 (1614)
|..+||+ +|++.+ ..-++...+|+..+
T Consensus 190 RVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 190 RVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred HHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 7778887 455544 45677777776654
No 412
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=96.00 E-value=0.8 Score=56.71 Aligned_cols=157 Identities=14% Similarity=0.163 Sum_probs=83.6
Q ss_pred CccEEEeecCCCChHHHHHHHHHHc-----CCeEEEEEecCCCChhcHHHHHHHHHHHhccCCCcEEEEEcCCcccccch
Q psy568 757 QGHLLLIGVSGAGKTTLSRFVAFMN-----GLSVFQIRAHNKYTGADFDEDLRTVLRRSGCKNEKIAFLLDESNVLESGF 831 (1614)
Q Consensus 757 ~gh~LLvG~~GsGKtsl~rlaA~~~-----~~~~~~i~~~~~~~~~df~~~lk~~l~~ag~~~~~~v~ll~d~~i~~~~~ 831 (1614)
.+++++.|++|+|||++++.++... +..++.++.....+..++ +..++...+....+ .....-..+
T Consensus 55 ~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~---~~~i~~~l~~~~~~------~~~~~~~~~ 125 (394)
T PRK00411 55 PLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAI---FSEIARQLFGHPPP------SSGLSFDEL 125 (394)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHH---HHHHHHHhcCCCCC------CCCCCHHHH
Confidence 3569999999999999999888654 566778876655443333 33333332211101 001112334
Q ss_pred HHHHHHhhccCCCCCCCChhhHHHHHHHhHHHHHHcCCCCCCHHHHHHHHH--HHHh-hcceEEEEECCCChhhHHHhhh
Q psy568 832 LERMNTLLANGEIPGLFEGDEYTTLMTQCKEGAQREGLMLDSNEELYKWFT--QQVM-KNLHVVFTMNPSSEGLKDRAAT 908 (1614)
Q Consensus 832 le~in~lL~~G~v~~Lf~~eE~~~i~~~~~~~~~~~~~~~~s~~~l~~~f~--~rv~-~nlhivl~~sp~~~~~r~~~~~ 908 (1614)
++.+...+....-+-+.--||.+.+... ...+.++.++. +... .++.+|++-++.. +..+ .
T Consensus 126 ~~~~~~~l~~~~~~~viviDE~d~l~~~------------~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~~--~~~~--l 189 (394)
T PRK00411 126 FDKIAEYLDERDRVLIVALDDINYLFEK------------EGNDVLYSLLRAHEEYPGARIGVIGISSDLT--FLYI--L 189 (394)
T ss_pred HHHHHHHHHhcCCEEEEEECCHhHhhcc------------CCchHHHHHHHhhhccCCCeEEEEEEECCcc--hhhh--c
Confidence 5555555554444455555666655410 01223444331 1111 2566676666543 2222 2
Q ss_pred Cccccccc--eecccCCCcHHHHHHHHHHhhc
Q psy568 909 SPALFNRC--VLNWFGDWSDTALYQVAKEFTS 938 (1614)
Q Consensus 909 ~PaL~~~~--~i~wf~~W~~eaL~~va~~~l~ 938 (1614)
.|.+.+++ ....|.+++.+.+..+....+.
T Consensus 190 ~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~ 221 (394)
T PRK00411 190 DPRVKSVFRPEEIYFPPYTADEIFDILKDRVE 221 (394)
T ss_pred CHHHHhcCCcceeecCCCCHHHHHHHHHHHHH
Confidence 33333332 3457899999999988877664
No 413
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=95.99 E-value=0.043 Score=68.94 Aligned_cols=33 Identities=24% Similarity=0.304 Sum_probs=26.7
Q ss_pred ccEEEeecCCCChHHHHHHHHHHc-----CCeEEEEEe
Q psy568 758 GHLLLIGVSGAGKTTLSRFVAFMN-----GLSVFQIRA 790 (1614)
Q Consensus 758 gh~LLvG~~GsGKtsl~rlaA~~~-----~~~~~~i~~ 790 (1614)
.+++|.|++|+|||.|++.+|... +..+..++.
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~ 186 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTS 186 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEH
Confidence 469999999999999999998765 555666654
No 414
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=95.99 E-value=0.035 Score=63.96 Aligned_cols=137 Identities=15% Similarity=0.107 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHhccEEEEecCCCCChhhHHHHHHHHHHHhh----------cCCceEEEeCCCCCCcCcccccccCCCC
Q psy568 30 MEKVLQLYQISNLNHGLMMVGPSGSGKSTAWKVLLKALERYE----------GVEGVAHIIDPKAISKEALYGVLDPNTR 99 (1614)
Q Consensus 30 ~~K~~qL~e~~~~r~gVmlvG~~gsGKTt~~~~L~~al~~~~----------~~~~~~~~inPkais~~eLyG~~d~~t~ 99 (1614)
-.+..+.++.=++.|+.+++||.|+||+++...+++.+.-.. +.-..++.+.|..-+
T Consensus 6 ~~~L~~~i~~~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~------------- 72 (290)
T PRK05917 6 WEALIQRVRDQKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKG------------- 72 (290)
T ss_pred HHHHHHHHHcCCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCC-------------
Confidence 346667777778899999999999999999999999884211 111123334442100
Q ss_pred ccccchHHHHHHHHHhhh--cCCCCCceEEEEccCCChhhhhhhhhhhcCCCccccCCCceeeCCCCceEEEEecccccc
Q psy568 100 EWTDGLFTHILRRIIDNV--RGEISKRQWIIFDGDVDPEWVENLNSVLDDNKLLTLPNGERLSLPPNIRIMFEVQDLKYA 177 (1614)
Q Consensus 100 eW~DGvls~i~r~~~~~~--~~~~~~~~WivfDG~vd~~WiE~lnsvLDdnk~L~L~nGeri~l~~~~~~iFEv~dL~~A 177 (1614)
..+=..-+|+..... .......+.+|+|. +|..=.+.-|++| |+|- .-|+++.||+-+++....
T Consensus 73 ---~~I~idqiR~l~~~~~~~p~e~~~kv~ii~~-ad~mt~~AaNaLL---K~LE-------EPp~~~~fiL~~~~~~~l 138 (290)
T PRK05917 73 ---RLHSIETPRAIKKQIWIHPYESPYKIYIIHE-ADRMTLDAISAFL---KVLE-------DPPQHGVIILTSAKPQRL 138 (290)
T ss_pred ---CcCcHHHHHHHHHHHhhCccCCCceEEEEec-hhhcCHHHHHHHH---HHhh-------cCCCCeEEEEEeCChhhC
Confidence 001122345543322 12223568888887 6666677788888 4443 246688999999999999
Q ss_pred CccccccceeEEecCc
Q psy568 178 TLATVSRCGMIWFSED 193 (1614)
Q Consensus 178 SPAtVSRcgmv~~~~~ 193 (1614)
-|...|||-.+.+.+.
T Consensus 139 l~TI~SRcq~~~~~~~ 154 (290)
T PRK05917 139 PPTIRSRSLSIHIPME 154 (290)
T ss_pred cHHHHhcceEEEccch
Confidence 8888999999999764
No 415
>PRK07952 DNA replication protein DnaC; Validated
Probab=95.98 E-value=0.043 Score=62.12 Aligned_cols=63 Identities=24% Similarity=0.310 Sum_probs=41.5
Q ss_pred ccEEEeecCCCChHHHHHHHHHHc---CCeEEEEEecCCCChhcHHHHHHHHHHHhc---------cCCCcEEEEEcCCc
Q psy568 758 GHLLLIGVSGAGKTTLSRFVAFMN---GLSVFQIRAHNKYTGADFDEDLRTVLRRSG---------CKNEKIAFLLDESN 825 (1614)
Q Consensus 758 gh~LLvG~~GsGKtsl~rlaA~~~---~~~~~~i~~~~~~~~~df~~~lk~~l~~ag---------~~~~~~v~ll~d~~ 825 (1614)
++++|.|++|+|||.|+..+|..+ |..+..++ ..+|...++..+..+. .. +.-++++||-.
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it------~~~l~~~l~~~~~~~~~~~~~~l~~l~-~~dlLvIDDig 172 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIIT------VADIMSAMKDTFSNSETSEEQLLNDLS-NVDLLVIDEIG 172 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE------HHHHHHHHHHHHhhccccHHHHHHHhc-cCCEEEEeCCC
Confidence 469999999999999999877654 67777664 4566666655443211 11 23367777765
Q ss_pred cc
Q psy568 826 VL 827 (1614)
Q Consensus 826 i~ 827 (1614)
..
T Consensus 173 ~~ 174 (244)
T PRK07952 173 VQ 174 (244)
T ss_pred CC
Confidence 43
No 416
>PRK13808 adenylate kinase; Provisional
Probab=95.96 E-value=0.0099 Score=69.69 Aligned_cols=23 Identities=35% Similarity=0.697 Sum_probs=21.1
Q ss_pred EEEecCCCCChhhHHHHHHHHHH
Q psy568 46 LMMVGPSGSGKSTAWKVLLKALE 68 (1614)
Q Consensus 46 VmlvG~~gsGKTt~~~~L~~al~ 68 (1614)
|+|+|||||||||..+.|++.++
T Consensus 3 Iiv~GpPGSGK~T~a~~LA~~yg 25 (333)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQYG 25 (333)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 89999999999999999998763
No 417
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=95.96 E-value=0.046 Score=62.63 Aligned_cols=158 Identities=16% Similarity=0.117 Sum_probs=86.9
Q ss_pred ceeeeCcchhhHHHHHHHHHhcC-----CCEEEecCCCCchHHHHHHHHhcCCC--------CceEEEEcccCCCHHHHH
Q psy568 394 DVVVPTLDTVRHESLLYTWLAEH-----KPLVLCGPPGSGKTMTLLSALRALPD--------MEVVSLNFSSATTPELLL 460 (1614)
Q Consensus 394 ~~~vpT~~t~r~~~ll~~~l~~~-----~~vLL~Gp~GtGKT~lv~~~~~~l~~--------~~~~~i~~s~~t~~~~l~ 460 (1614)
+.+|..+.....+..+..++... .++||+|++|.|||++++.+.+..+. .+++.+...+.-+...+-
T Consensus 34 ~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y 113 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFY 113 (302)
T ss_pred CCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHH
Confidence 45666777777777788877653 47899999999999999999975531 245666665555544333
Q ss_pred hHhhcccce--eec-CCc-------cccccccCCceEEEEeccCCCCCccccC-cccHHHHHHHHHHcCceeeCCCCceE
Q psy568 461 KTFDHYCEY--RKT-PNG-------VILSPIQLGKWLVLFCDEINLPDMDKYA-TQRVISFLRQLIEQRGFYRPADKQWV 529 (1614)
Q Consensus 461 ~~~~~~~~~--~~~-~~g-------~~~~p~~~gk~~vlfiDdin~p~~d~~g-~q~~lelLrqlld~~~~~~~~~~~~~ 529 (1614)
..+-..+.. +.. +.+ .++.. .|-+ ++.|||+|-.-...+- -..++.+||.+-..-
T Consensus 114 ~~IL~~lgaP~~~~~~~~~~~~~~~~llr~--~~vr-mLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL----------- 179 (302)
T PF05621_consen 114 SAILEALGAPYRPRDRVAKLEQQVLRLLRR--LGVR-MLIIDEFHNLLAGSYRKQREFLNALKFLGNEL----------- 179 (302)
T ss_pred HHHHHHhCcccCCCCCHHHHHHHHHHHHHH--cCCc-EEEeechHHHhcccHHHHHHHHHHHHHHhhcc-----------
Confidence 332111110 000 000 01111 1222 3446999953222211 234677777773321
Q ss_pred eecCeEEEEeecCCCCCCCCCCcccccccccEEEecCCCh
Q psy568 530 SLERIQCVGACNPPTDPGRKPLSHRFLRHVPVIYVDYPGE 569 (1614)
Q Consensus 530 ~~~~~~~iaa~n~~~~~g~~~l~~r~~r~f~~i~i~~p~~ 569 (1614)
++.+|++..+.. ..--.-++-+.+||.++.+|.-..
T Consensus 180 ---~ipiV~vGt~~A-~~al~~D~QLa~RF~~~~Lp~W~~ 215 (302)
T PF05621_consen 180 ---QIPIVGVGTREA-YRALRTDPQLASRFEPFELPRWEL 215 (302)
T ss_pred ---CCCeEEeccHHH-HHHhccCHHHHhccCCccCCCCCC
Confidence 234454433321 011223567788999998886654
No 418
>PRK06921 hypothetical protein; Provisional
Probab=95.95 E-value=0.01 Score=68.48 Aligned_cols=36 Identities=36% Similarity=0.552 Sum_probs=28.2
Q ss_pred cCCCEEEecCCCCchHHHHHHHHhcCC---CCceEEEEc
Q psy568 415 EHKPLVLCGPPGSGKTMTLLSALRALP---DMEVVSLNF 450 (1614)
Q Consensus 415 ~~~~vLL~Gp~GtGKT~lv~~~~~~l~---~~~~~~i~~ 450 (1614)
.+.+++|+||||+|||.++..++..+. +..++.++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~ 154 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPF 154 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEH
Confidence 478899999999999999999888764 344555544
No 419
>KOG1970|consensus
Probab=95.93 E-value=0.036 Score=66.98 Aligned_cols=152 Identities=14% Similarity=0.186 Sum_probs=73.3
Q ss_pred CCEEEecCCCCchHHHHHHHHhcCCCCceEEEE----------cccCCCH-----HHHHhHhhcccceeecCCcccccc-
Q psy568 417 KPLVLCGPPGSGKTMTLLSALRALPDMEVVSLN----------FSSATTP-----ELLLKTFDHYCEYRKTPNGVILSP- 480 (1614)
Q Consensus 417 ~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~----------~s~~t~~-----~~l~~~~~~~~~~~~~~~g~~~~p- 480 (1614)
+=+||+||+||||||.++-+.+.+ ++.++... ++..|+. ..-...+++.++.... .|.+..-
T Consensus 111 ~iLLltGPsGcGKSTtvkvLskel-g~~~~Ew~Npi~~~~~~~~h~~t~~~~~~~~s~L~~fesFler~~k-yg~l~~~g 188 (634)
T KOG1970|consen 111 RILLLTGPSGCGKSTTVKVLSKEL-GYQLIEWSNPINLKEPENLHNETSFLMFPYQSQLAVFESFLLRATK-YGSLQMSG 188 (634)
T ss_pred eEEEEeCCCCCCchhHHHHHHHhh-CceeeeecCCccccccccccccchhcccchhhHHHHHHHHHHHHHh-hchhhhcc
Confidence 347899999999999998777766 55443211 2222221 1112223333333211 1333321
Q ss_pred -ccCCceEEEEeccCCCCC-ccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCC-CCCCCcccc--
Q psy568 481 -IQLGKWLVLFCDEINLPD-MDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDP-GRKPLSHRF-- 555 (1614)
Q Consensus 481 -~~~gk~~vlfiDdin~p~-~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~-g~~~l~~r~-- 555 (1614)
-..+++-+|+|||+--.. .| .....-+.||.+..+ |++ |-|.+|.-+..++.. .+...+..+
T Consensus 189 ~~~~~~~~liLveDLPn~~~~d--~~~~f~evL~~y~s~-g~~----------PlIf~iTd~~~~g~nnq~rlf~~d~q~ 255 (634)
T KOG1970|consen 189 DDLRTDKKLILVEDLPNQFYRD--DSETFREVLRLYVSI-GRC----------PLIFIITDSLSNGNNNQDRLFPKDIQE 255 (634)
T ss_pred cccccCceEEEeeccchhhhhh--hHHHHHHHHHHHHhc-CCC----------cEEEEEeccccCCCcchhhhchhhhhh
Confidence 112345678899984321 11 223344566644443 322 213333333333211 111111112
Q ss_pred cccccEEEecCCChhHHHHHHHHHHHhh
Q psy568 556 LRHVPVIYVDYPGETSLKQIYGTFSRAM 583 (1614)
Q Consensus 556 ~r~f~~i~i~~p~~~~l~~I~~~~~~~~ 583 (1614)
.-+...|.+.+-....+++-+..++...
T Consensus 256 ~~ri~~IsFNPIa~T~MKK~L~ric~~e 283 (634)
T KOG1970|consen 256 EPRISNISFNPIAPTIMKKFLKRICRIE 283 (634)
T ss_pred ccCcceEeecCCcHHHHHHHHHHHHHHh
Confidence 2244567777777777777777776654
No 420
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=95.93 E-value=2.1 Score=57.25 Aligned_cols=20 Identities=25% Similarity=0.381 Sum_probs=17.5
Q ss_pred cEEEeecCCCChHHHHHHHH
Q psy568 759 HLLLIGVSGAGKTTLSRFVA 778 (1614)
Q Consensus 759 h~LLvG~~GsGKtsl~rlaA 778 (1614)
.+++.||.++|||++.|.++
T Consensus 329 ~~iITGpN~gGKTt~lktig 348 (782)
T PRK00409 329 VLVITGPNTGGKTVTLKTLG 348 (782)
T ss_pred EEEEECCCCCCcHHHHHHHH
Confidence 48899999999999988665
No 421
>KOG0976|consensus
Probab=95.90 E-value=7.5 Score=48.97 Aligned_cols=43 Identities=16% Similarity=0.169 Sum_probs=31.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhh
Q psy568 1311 ATAIKTDLDNVQAKVERSMALLKSLGIERERWEATSETFRSQM 1353 (1614)
Q Consensus 1311 ~~~l~~~~~~~~~rl~~a~~l~~~L~~e~~rW~~~~~~~~~~~ 1353 (1614)
+..+..+...++++++..+.++..|-.+...-.++++.+++.+
T Consensus 360 rd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQidelKn~i 402 (1265)
T KOG0976|consen 360 RDMALMDVRSIQEKKENVEEELQSLLELQAERQEQIDELKNHI 402 (1265)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3334566677788888888888888888777777777776654
No 422
>PRK10536 hypothetical protein; Provisional
Probab=95.90 E-value=0.054 Score=60.88 Aligned_cols=163 Identities=13% Similarity=0.186 Sum_probs=99.4
Q ss_pred HHHHHHhccEEEEecCCCCChhhHHHHHHHHHHHhhcCCceEEEeCCCCCCcCcccccccCCCC-----ccccchHHHHH
Q psy568 36 LYQISNLNHGLMMVGPSGSGKSTAWKVLLKALERYEGVEGVAHIIDPKAISKEALYGVLDPNTR-----EWTDGLFTHIL 110 (1614)
Q Consensus 36 L~e~~~~r~gVmlvG~~gsGKTt~~~~L~~al~~~~~~~~~~~~inPkais~~eLyG~~d~~t~-----eW~DGvls~i~ 110 (1614)
+.+.+..+.-|+++||+|||||++...++...- +.+.-..+++.+| .++.++.+|++ |.+- .|---+...+-
T Consensus 67 ~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l-~~~~~~kIiI~RP-~v~~ge~LGfL-PG~~~eK~~p~~~pi~D~L~ 143 (262)
T PRK10536 67 YLKAIESKQLIFATGEAGCGKTWISAAKAAEAL-IHKDVDRIIVTRP-VLQADEDLGFL-PGDIAEKFAPYFRPVYDVLV 143 (262)
T ss_pred HHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHH-hcCCeeEEEEeCC-CCCchhhhCcC-CCCHHHHHHHHHHHHHHHHH
Confidence 333555577899999999999999888877321 1222223444555 45889999986 3332 25333222222
Q ss_pred H--------HHHh------------hhcCCCCCceEEEEcc--CCChhhhhhhhhhhc-CCCccccCCCceeeCCCCceE
Q psy568 111 R--------RIID------------NVRGEISKRQWIIFDG--DVDPEWVENLNSVLD-DNKLLTLPNGERLSLPPNIRI 167 (1614)
Q Consensus 111 r--------~~~~------------~~~~~~~~~~WivfDG--~vd~~WiE~lnsvLD-dnk~L~L~nGeri~l~~~~~~ 167 (1614)
. .+.. -.++.+-...+||+|= .+++.=+..+.|-+. +.|++...+-..|-+|+..
T Consensus 144 ~~~~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~ltR~g~~sk~v~~GD~~QiD~p~~~-- 221 (262)
T PRK10536 144 RRLGASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFLTRLGENVTVIVNGDITQCDLPRGV-- 221 (262)
T ss_pred HHhChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHHHhhcCCCCEEEEeCChhhccCCCCC--
Confidence 1 1110 0112233457999994 677866666666665 4455556777777777532
Q ss_pred EEEeccccccCccc--cccceeEEecCcccchHHHHHHHHH
Q psy568 168 MFEVQDLKYATLAT--VSRCGMIWFSEDVLSTEMIFENYLS 206 (1614)
Q Consensus 168 iFEv~dL~~ASPAt--VSRcgmv~~~~~~l~~~~~~~~~~~ 206 (1614)
.+-|.+|.=.. ...+|.|+++.+++--.+++..|+.
T Consensus 222 ---~sGL~~~~~~~k~~~~~~~i~l~~~d~vRs~l~~~~~~ 259 (262)
T PRK10536 222 ---KSGLSDALERFEEDEMVGIVRFGKEDCVRSALCQRTLH 259 (262)
T ss_pred ---CCCHHHHHHHhCCCCceEEEEEecCceEecHHHHHHHH
Confidence 34444443222 4579999999988888888888875
No 423
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=95.88 E-value=0.028 Score=62.52 Aligned_cols=83 Identities=24% Similarity=0.316 Sum_probs=56.5
Q ss_pred HHHhccCCccEEEeecCCCChHHHHHHHHHHcCCeEEEEEecCCCChhcHHHHHHHHHHHhccCCCcEEEEEcCCccccc
Q psy568 750 DRIFRQPQGHLLLIGVSGAGKTTLSRFVAFMNGLSVFQIRAHNKYTGADFDEDLRTVLRRSGCKNEKIAFLLDESNVLES 829 (1614)
Q Consensus 750 ~Ril~~p~gh~LLvG~~GsGKtsl~rlaA~~~~~~~~~i~~~~~~~~~df~~~lk~~l~~ag~~~~~~v~ll~d~~i~~~ 829 (1614)
++.-..+-.|+||.||||.|||||+.+.|.-.|.++....-. .-+=-.||-.++.. . .++-|+++|+-+-.++
T Consensus 45 Ak~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp----~leK~gDlaaiLt~--L-e~~DVLFIDEIHrl~~ 117 (332)
T COG2255 45 AKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGP----ALEKPGDLAAILTN--L-EEGDVLFIDEIHRLSP 117 (332)
T ss_pred HHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccc----cccChhhHHHHHhc--C-CcCCeEEEehhhhcCh
Confidence 333344557999999999999999999999999887654211 11112445555442 2 3445777788887788
Q ss_pred chHHHHHHhh
Q psy568 830 GFLERMNTLL 839 (1614)
Q Consensus 830 ~~le~in~lL 839 (1614)
.+-|.+...|
T Consensus 118 ~vEE~LYpaM 127 (332)
T COG2255 118 AVEEVLYPAM 127 (332)
T ss_pred hHHHHhhhhh
Confidence 7777777665
No 424
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=95.88 E-value=0.11 Score=58.37 Aligned_cols=128 Identities=22% Similarity=0.262 Sum_probs=61.6
Q ss_pred cEEEeecCCCChHHHHHHHHHH-----cCCeEEEEEecC----------CCCh------------------------hcH
Q psy568 759 HLLLIGVSGAGKTTLSRFVAFM-----NGLSVFQIRAHN----------KYTG------------------------ADF 799 (1614)
Q Consensus 759 h~LLvG~~GsGKtsl~rlaA~~-----~~~~~~~i~~~~----------~~~~------------------------~df 799 (1614)
++.|.|++|+|||.|.+.+|.. .+..+..++... .-.. ..|
T Consensus 36 ~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~~~DlL~iDDi~~l~~~~~~ 115 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRLRSADLLIIDDIQFLAGKQRT 115 (219)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHCTSSEEEEETGGGGTTHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhhhcCCEEEEecchhhcCchHH
Confidence 5899999999999999988754 256677765311 0000 112
Q ss_pred HHHHHHHHHHhccCCCcEEEEEcCCcccccchHHHHHHhhccCCCCCCCChhhHHHHHHHhHHHHHHcCCCCCCHHHHHH
Q psy568 800 DEDLRTVLRRSGCKNEKIAFLLDESNVLESGFLERMNTLLANGEIPGLFEGDEYTTLMTQCKEGAQREGLMLDSNEELYK 879 (1614)
Q Consensus 800 ~~~lk~~l~~ag~~~~~~v~ll~d~~i~~~~~le~in~lL~~G~v~~Lf~~eE~~~i~~~~~~~~~~~~~~~~s~~~l~~ 879 (1614)
.+.+..++......++++++--+..--.-..+.+++-+=|..|-+..+=.+++ +....-++..+...|.. =++++..
T Consensus 116 q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~-~~r~~il~~~a~~~~~~--l~~~v~~ 192 (219)
T PF00308_consen 116 QEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDD-EDRRRILQKKAKERGIE--LPEEVIE 192 (219)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----H-HHHHHHHHHHHHHTT----S-HHHHH
T ss_pred HHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCH-HHHHHHHHHHHHHhCCC--CcHHHHH
Confidence 22333333333333343333322211101224445555555555444444333 44444555556666643 3566777
Q ss_pred HHHHHHhhcc
Q psy568 880 WFTQQVMKNL 889 (1614)
Q Consensus 880 ~f~~rv~~nl 889 (1614)
|..+++++++
T Consensus 193 ~l~~~~~~~~ 202 (219)
T PF00308_consen 193 YLARRFRRDV 202 (219)
T ss_dssp HHHHHTTSSH
T ss_pred HHHHhhcCCH
Confidence 7777666554
No 425
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.88 E-value=0.052 Score=70.01 Aligned_cols=122 Identities=16% Similarity=0.206 Sum_probs=65.6
Q ss_pred cc-EEEeecCCCChHHHHHHHHHHcCC-------------------------eEEEEEecCCCChhcHHHHHHHHHHHh-
Q psy568 758 GH-LLLIGVSGAGKTTLSRFVAFMNGL-------------------------SVFQIRAHNKYTGADFDEDLRTVLRRS- 810 (1614)
Q Consensus 758 gh-~LLvG~~GsGKtsl~rlaA~~~~~-------------------------~~~~i~~~~~~~~~df~~~lk~~l~~a- 810 (1614)
.| .||.|+.|+||++++++.|....| +++.++.....+ .++++.++..+
T Consensus 39 ~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~~~ld~~~~~~----vd~Ir~li~~~~ 114 (614)
T PRK14971 39 AHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNIHELDAASNNS----VDDIRNLIEQVR 114 (614)
T ss_pred CeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCceEEecccccCC----HHHHHHHHHHHh
Confidence 35 689999999999999998876542 334443322222 34555555333
Q ss_pred --ccCCCcEEEEEcCCcccccchHHHHHHhhcc--CCCCCCCChhhHHHHHHHhHHHHHHcCCCCCCHHHHHHHHHH
Q psy568 811 --GCKNEKIAFLLDESNVLESGFLERMNTLLAN--GEIPGLFEGDEYTTLMTQCKEGAQREGLMLDSNEELYKWFTQ 883 (1614)
Q Consensus 811 --g~~~~~~v~ll~d~~i~~~~~le~in~lL~~--G~v~~Lf~~eE~~~i~~~~~~~~~~~~~~~~s~~~l~~~f~~ 883 (1614)
...++.-++++++.+..+..-.+.+-..|.. +..-=+|..++...|+..++..+..-.....+.+++..|..+
T Consensus 115 ~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ 191 (614)
T PRK14971 115 IPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQY 191 (614)
T ss_pred hCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHH
Confidence 3445566778888766554333222233322 222234555566666665554444333222344444444443
No 426
>CHL00206 ycf2 Ycf2; Provisional
Probab=95.84 E-value=0.012 Score=80.86 Aligned_cols=39 Identities=21% Similarity=0.463 Sum_probs=34.9
Q ss_pred hccCCccEEEeecCCCChHHHHHHHHHHcCCeEEEEEecC
Q psy568 753 FRQPQGHLLLIGVSGAGKTTLSRFVAFMNGLSVFQIRAHN 792 (1614)
Q Consensus 753 l~~p~gh~LLvG~~GsGKtsl~rlaA~~~~~~~~~i~~~~ 792 (1614)
++.|+| +||+||+|||||.|||.+|.-++.+++.+..++
T Consensus 1627 l~pPKG-ILLiGPPGTGKTlLAKALA~es~VPFIsISgs~ 1665 (2281)
T CHL00206 1627 LSPSRG-ILVIGSIGTGRSYLVKYLATNSYVPFITVFLNK 1665 (2281)
T ss_pred CCCCCc-eEEECCCCCCHHHHHHHHHHhcCCceEEEEHHH
Confidence 346777 999999999999999999999999999998654
No 427
>PRK03918 chromosome segregation protein; Provisional
Probab=95.83 E-value=13 Score=51.33 Aligned_cols=22 Identities=36% Similarity=0.487 Sum_probs=18.1
Q ss_pred EEEecCCCCchHHHHHHHHhcC
Q psy568 419 LVLCGPPGSGKTMTLLSALRAL 440 (1614)
Q Consensus 419 vLL~Gp~GtGKT~lv~~~~~~l 440 (1614)
.+++||.|+|||+++..+.-.+
T Consensus 26 ~~i~G~nG~GKStil~ai~~~l 47 (880)
T PRK03918 26 NLIIGQNGSGKSSILEAILVGL 47 (880)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 5799999999999997765444
No 428
>PRK12377 putative replication protein; Provisional
Probab=95.82 E-value=0.011 Score=67.07 Aligned_cols=94 Identities=20% Similarity=0.291 Sum_probs=53.0
Q ss_pred HHhcCCCEEEecCCCCchHHHHHHHHhcCC--CCceEEEEcccCCCHHHHHhHhhcccceeecCCccccccccCCceEEE
Q psy568 412 WLAEHKPLVLCGPPGSGKTMTLLSALRALP--DMEVVSLNFSSATTPELLLKTFDHYCEYRKTPNGVILSPIQLGKWLVL 489 (1614)
Q Consensus 412 ~l~~~~~vLL~Gp~GtGKT~lv~~~~~~l~--~~~~~~i~~s~~t~~~~l~~~~~~~~~~~~~~~g~~~~p~~~gk~~vl 489 (1614)
+.....+++|.||||||||.++..++..+. +..++.++.. ++...+......... ...+.... .+.-+|
T Consensus 97 ~~~~~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~------~l~~~l~~~~~~~~~-~~~~l~~l--~~~dLL 167 (248)
T PRK12377 97 LMTGCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVP------DVMSRLHESYDNGQS-GEKFLQEL--CKVDLL 167 (248)
T ss_pred HHhcCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHH------HHHHHHHHHHhccch-HHHHHHHh--cCCCEE
Confidence 334457899999999999999988887663 3445444432 333333221110000 00111111 222467
Q ss_pred EeccCCCCCccccCcccHHHHHHHHHHcC
Q psy568 490 FCDEINLPDMDKYATQRVISFLRQLIEQR 518 (1614)
Q Consensus 490 fiDdin~p~~d~~g~q~~lelLrqlld~~ 518 (1614)
+|||+....... ...+.|-++++++
T Consensus 168 iIDDlg~~~~s~----~~~~~l~~ii~~R 192 (248)
T PRK12377 168 VLDEIGIQRETK----NEQVVLNQIIDRR 192 (248)
T ss_pred EEcCCCCCCCCH----HHHHHHHHHHHHH
Confidence 789998754333 3566778888764
No 429
>KOG0161|consensus
Probab=95.82 E-value=17 Score=52.42 Aligned_cols=10 Identities=20% Similarity=0.076 Sum_probs=5.7
Q ss_pred CCCEEEecCC
Q psy568 416 HKPLVLCGPP 425 (1614)
Q Consensus 416 ~~~vLL~Gp~ 425 (1614)
|++.-+.+|.
T Consensus 551 gk~~~f~~~k 560 (1930)
T KOG0161|consen 551 GKHPKFQKPK 560 (1930)
T ss_pred ccCccccCcc
Confidence 4555566664
No 430
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=95.82 E-value=0.025 Score=64.20 Aligned_cols=52 Identities=19% Similarity=0.186 Sum_probs=29.2
Q ss_pred hcceEEEEECCCChhhHHHhhhCccccccceecccCCCcHHHHHHHHHHhhcc
Q psy568 887 KNLHVVFTMNPSSEGLKDRAATSPALFNRCVLNWFGDWSDTALYQVAKEFTSK 939 (1614)
Q Consensus 887 ~nlhivl~~sp~~~~~r~~~~~~PaL~~~~~i~wf~~W~~eaL~~va~~~l~~ 939 (1614)
.++.+|++-|..+ .+.......+.+++++....+++|+.+.........+.+
T Consensus 155 ~~~~~v~~~S~~~-~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~ 206 (234)
T PF01637_consen 155 QNVSIVITGSSDS-LMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKE 206 (234)
T ss_dssp TTEEEEEEESSHH-HHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHC
T ss_pred CCceEEEECCchH-HHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHH
Confidence 4666677766532 233334566778888888999999999888887776554
No 431
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=95.80 E-value=0.0041 Score=67.35 Aligned_cols=123 Identities=20% Similarity=0.289 Sum_probs=79.0
Q ss_pred hHHHHHHHHHHHHHhccEEEEecCCCCChhhHHHHHHHHHHHhhcCCc---------------------eEEEeCCCCCC
Q psy568 28 PWMEKVLQLYQISNLNHGLMMVGPSGSGKSTAWKVLLKALERYEGVEG---------------------VAHIIDPKAIS 86 (1614)
Q Consensus 28 ~~~~K~~qL~e~~~~r~gVmlvG~~gsGKTt~~~~L~~al~~~~~~~~---------------------~~~~inPkais 86 (1614)
+..++++++--. -+|+|+++||||||||++.+.+..-|-.+...+. .-++--+-++|
T Consensus 9 e~aKrAL~iAAa--G~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~~~~~~~~~~~~Pfr~phhs~s 86 (206)
T PF01078_consen 9 EEAKRALEIAAA--GGHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAGLGPDEGLIRQRPFRAPHHSAS 86 (206)
T ss_dssp HHHHHHHHHHHH--CC--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT---S---EEEE---EEEE-TT--
T ss_pred HHHHHHHHHHHc--CCCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhccccccccCCCCCceecCCCcccCCCCcC
Confidence 556677766555 3799999999999999999999987754421100 01233345677
Q ss_pred cCcccccccCCCCccccchHHHHHHHHHhhhcCCCCCceEEEEc--cCCChhhhhhhhhhhcCCCccccCCCceeeCCCC
Q psy568 87 KEALYGVLDPNTREWTDGLFTHILRRIIDNVRGEISKRQWIIFD--GDVDPEWVENLNSVLDDNKLLTLPNGERLSLPPN 164 (1614)
Q Consensus 87 ~~eLyG~~d~~t~eW~DGvls~i~r~~~~~~~~~~~~~~WivfD--G~vd~~WiE~lnsvLDdnk~L~L~nGeri~l~~~ 164 (1614)
...|.|.- .....|.++.+ .+--+.+| -..++.-+|.|-..|++.+.-.-..|..+..|-+
T Consensus 87 ~~~liGgg----~~~~PGeislA-------------h~GVLflDE~~ef~~~vld~Lr~ple~g~v~i~R~~~~~~~Pa~ 149 (206)
T PF01078_consen 87 EAALIGGG----RPPRPGEISLA-------------HRGVLFLDELNEFDRSVLDALRQPLEDGEVTISRAGGSVTYPAR 149 (206)
T ss_dssp HHHHHEEG----GGEEE-CGGGG-------------TTSEEEECETTTS-HHHHHHHHHHHHHSBEEEEETTEEEEEB--
T ss_pred HHHHhCCC----cCCCcCHHHHh-------------cCCEEEechhhhcCHHHHHHHHHHHHCCeEEEEECCceEEEecc
Confidence 77777773 25566766543 23577888 5789999999999999987766679999999888
Q ss_pred ceEEE
Q psy568 165 IRIMF 169 (1614)
Q Consensus 165 ~~~iF 169 (1614)
+-+|-
T Consensus 150 f~lv~ 154 (206)
T PF01078_consen 150 FLLVA 154 (206)
T ss_dssp EEEEE
T ss_pred cEEEE
Confidence 77765
No 432
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=95.80 E-value=9.3 Score=49.30 Aligned_cols=90 Identities=13% Similarity=0.267 Sum_probs=45.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy568 1002 RHYLDFINHFVKLYREKCSELEEQQLHLNVGLG--KIAETVEQVEEMQKSLAVKSQELQSKNEAANLKLKEMIKDQQEAE 1079 (1614)
Q Consensus 1002 ~~yl~~l~~f~~l~~~k~~~~~~~~~~l~~gL~--kl~~~~~~v~~l~~~L~~~~~~l~~~~~~~~~~l~~i~~~~~~~e 1079 (1614)
..|-.+=+.|..+...+..++..........++ ++..+...+..+...|......+.....+.+++++.-.+.+.+++
T Consensus 60 ~~fe~w~~~w~~i~~~~~~~ie~~L~~ae~~~~~~rf~ka~~~i~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~ 139 (560)
T PF06160_consen 60 EKFEEWRQKWDEIVTKQLPEIEEQLFEAEEYADKYRFKKAKQAIKEIEEQLDEIEEDIKEILDELDELLESEEKNREEIE 139 (560)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566666666666666665555444444 344445555555555555555554444444444444444444444
Q ss_pred HHHHHHHHHHHH
Q psy568 1080 KRKVQSQDIQAE 1091 (1614)
Q Consensus 1080 ~~~~~~~~~~~~ 1091 (1614)
..+..-++.++.
T Consensus 140 ~l~~~y~~lrk~ 151 (560)
T PF06160_consen 140 ELKEKYRELRKE 151 (560)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 433
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=95.78 E-value=0.014 Score=72.64 Aligned_cols=69 Identities=25% Similarity=0.489 Sum_probs=43.0
Q ss_pred ccCCccEEEeecCCCChHHHHHHHHHHcCCe--------EEEEEecC-----CCChhcHHHHHHHHHHHhc---cCCCcE
Q psy568 754 RQPQGHLLLIGVSGAGKTTLSRFVAFMNGLS--------VFQIRAHN-----KYTGADFDEDLRTVLRRSG---CKNEKI 817 (1614)
Q Consensus 754 ~~p~gh~LLvG~~GsGKtsl~rlaA~~~~~~--------~~~i~~~~-----~~~~~df~~~lk~~l~~ag---~~~~~~ 817 (1614)
..|+| +||.||+|||||++++.+|..++.. .+.+++.. .| ..+....++.++..+. ..+.|+
T Consensus 214 ~~p~G-ILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~eLl~ky-vGete~~ir~iF~~Ar~~a~~g~p~ 291 (512)
T TIGR03689 214 KPPKG-VLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGPELLNKY-VGETERQIRLIFQRAREKASDGRPV 291 (512)
T ss_pred CCCcc-eEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccchhhcccc-cchHHHHHHHHHHHHHHHhhcCCCc
Confidence 44565 9999999999999999999887654 22222221 11 1122234455554442 346788
Q ss_pred EEEEcCC
Q psy568 818 AFLLDES 824 (1614)
Q Consensus 818 v~ll~d~ 824 (1614)
++++||-
T Consensus 292 IIfIDEi 298 (512)
T TIGR03689 292 IVFFDEM 298 (512)
T ss_pred eEEEehh
Confidence 8888774
No 434
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.78 E-value=0.038 Score=67.66 Aligned_cols=88 Identities=23% Similarity=0.341 Sum_probs=48.6
Q ss_pred hhHHHHHHHHHHHHHHhccCCccEEEeecCCCChHHHHHHHHHHcCC------------eEEEEEecCCCChhcHHHHHH
Q psy568 737 VLFDEVLDHVLRIDRIFRQPQGHLLLIGVSGAGKTTLSRFVAFMNGL------------SVFQIRAHNKYTGADFDEDLR 804 (1614)
Q Consensus 737 vlf~~~i~hi~ri~Ril~~p~gh~LLvG~~GsGKtsl~rlaA~~~~~------------~~~~i~~~~~~~~~df~~~lk 804 (1614)
+..+.+++.+.+..+- .....++||.||+|+|||++++.+|...++ .+++++.....+ .++++
T Consensus 20 ig~~~~~~~l~~~i~~-~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~i~ 94 (367)
T PRK14970 20 VGQSHITNTLLNAIEN-NHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNS----VDDIR 94 (367)
T ss_pred CCcHHHHHHHHHHHHc-CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCC----HHHHH
Confidence 3344444444333321 122346889999999999999988876543 122222111111 24555
Q ss_pred HHHHHhc---cCCCcEEEEEcCCccccc
Q psy568 805 TVLRRSG---CKNEKIAFLLDESNVLES 829 (1614)
Q Consensus 805 ~~l~~ag---~~~~~~v~ll~d~~i~~~ 829 (1614)
.++..+. ..+++-++++++.+...+
T Consensus 95 ~l~~~~~~~p~~~~~kiviIDE~~~l~~ 122 (367)
T PRK14970 95 NLIDQVRIPPQTGKYKIYIIDEVHMLSS 122 (367)
T ss_pred HHHHHHhhccccCCcEEEEEeChhhcCH
Confidence 5555432 345566788888654444
No 435
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=95.77 E-value=0.1 Score=61.40 Aligned_cols=134 Identities=15% Similarity=0.086 Sum_probs=78.5
Q ss_pred HHHHhcC---CCEEEecCCCCchHHHHHHHHhcCCCC----------------------ceEEEEc---ccCCCHHHHHh
Q psy568 410 YTWLAEH---KPLVLCGPPGSGKTMTLLSALRALPDM----------------------EVVSLNF---SSATTPELLLK 461 (1614)
Q Consensus 410 ~~~l~~~---~~vLL~Gp~GtGKT~lv~~~~~~l~~~----------------------~~~~i~~---s~~t~~~~l~~ 461 (1614)
..++..| +..|++||.|+||++++..+++.+... .+..+.- +...+.+.+..
T Consensus 16 ~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~vdqiR~ 95 (319)
T PRK06090 16 KAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKEGKSITVEQIRQ 95 (319)
T ss_pred HHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcCCCcCCHHHHHH
Confidence 3444444 468999999999999999988755210 1112211 11233344433
Q ss_pred HhhcccceeecCCccccccccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeec
Q psy568 462 TFDHYCEYRKTPNGVILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACN 541 (1614)
Q Consensus 462 ~~~~~~~~~~~~~g~~~~p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n 541 (1614)
..+ .. ...|. .|.+=|++||+.+.-.. +....+|.-+ |. | .+++.||-.++
T Consensus 96 l~~-~~---------~~~~~-~~~~kV~iI~~ae~m~~-----~AaNaLLKtL-EE-----P-------p~~t~fiL~t~ 146 (319)
T PRK06090 96 CNR-LA---------QESSQ-LNGYRLFVIEPADAMNE-----SASNALLKTL-EE-----P-------APNCLFLLVTH 146 (319)
T ss_pred HHH-HH---------hhCcc-cCCceEEEecchhhhCH-----HHHHHHHHHh-cC-----C-------CCCeEEEEEEC
Confidence 221 11 12233 34455667799887322 2234445444 42 1 13566666665
Q ss_pred CCCCCCCCCCcccccccccEEEecCCChhHHHHHHH
Q psy568 542 PPTDPGRKPLSHRFLRHVPVIYVDYPGETSLKQIYG 577 (1614)
Q Consensus 542 ~~~~~g~~~l~~r~~r~f~~i~i~~p~~~~l~~I~~ 577 (1614)
.+. .+.+-+.+|+..+.++.|+.+++...+.
T Consensus 147 ~~~-----~lLpTI~SRCq~~~~~~~~~~~~~~~L~ 177 (319)
T PRK06090 147 NQK-----RLLPTIVSRCQQWVVTPPSTAQAMQWLK 177 (319)
T ss_pred Chh-----hChHHHHhcceeEeCCCCCHHHHHHHHH
Confidence 544 5888899999999999999988777654
No 436
>KOG0743|consensus
Probab=95.74 E-value=0.017 Score=68.71 Aligned_cols=59 Identities=25% Similarity=0.479 Sum_probs=46.9
Q ss_pred CccEEEeecCCCChHHHHHHHHHHcCCeEEEEEecCCCChhcHHHHHHHHHHHhccCCCcEEEEEcC
Q psy568 757 QGHLLLIGVSGAGKTTLSRFVAFMNGLSVFQIRAHNKYTGADFDEDLRTVLRRSGCKNEKIAFLLDE 823 (1614)
Q Consensus 757 ~gh~LLvG~~GsGKtsl~rlaA~~~~~~~~~i~~~~~~~~~df~~~lk~~l~~ag~~~~~~v~ll~d 823 (1614)
|| =||.||||+||+|++...|..++++++-++++.-.+.+ +|+.+|..+ .++.+ +++.|
T Consensus 236 RG-YLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~n~----dLr~LL~~t--~~kSI-ivIED 294 (457)
T KOG0743|consen 236 RG-YLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKLDS----DLRHLLLAT--PNKSI-LLIED 294 (457)
T ss_pred cc-ceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccCcH----HHHHHHHhC--CCCcE-EEEee
Confidence 56 89999999999999999999999999999998765544 488888855 34444 44455
No 437
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=95.73 E-value=2.7 Score=56.10 Aligned_cols=23 Identities=22% Similarity=0.343 Sum_probs=20.1
Q ss_pred ccEEEeecCCCChHHHHHHHHHH
Q psy568 758 GHLLLIGVSGAGKTTLSRFVAFM 780 (1614)
Q Consensus 758 gh~LLvG~~GsGKtsl~rlaA~~ 780 (1614)
..++|+||.|+||||+.|.++-+
T Consensus 323 ~~liItGpNg~GKSTlLK~i~~~ 345 (771)
T TIGR01069 323 RVLAITGPNTGGKTVTLKTLGLL 345 (771)
T ss_pred eEEEEECCCCCCchHHHHHHHHH
Confidence 46899999999999999988744
No 438
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=95.73 E-value=0.063 Score=64.03 Aligned_cols=148 Identities=18% Similarity=0.223 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHHhccEEEEecCCCCChhhHHHHHHHHHHHhh------------------cCCceEEEeCCCCCCcCccc
Q psy568 30 MEKVLQLYQISNLNHGLMMVGPSGSGKSTAWKVLLKALERYE------------------GVEGVAHIIDPKAISKEALY 91 (1614)
Q Consensus 30 ~~K~~qL~e~~~~r~gVmlvG~~gsGKTt~~~~L~~al~~~~------------------~~~~~~~~inPkais~~eLy 91 (1614)
-++..+.++.-++.|+.++.||+|+||+++...+++++.=.. |.-..++.+.|..
T Consensus 11 ~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~------- 83 (334)
T PRK07993 11 YEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEK------- 83 (334)
T ss_pred HHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEeccc-------
Confidence 345778888889999999999999999999999999983110 0111234454421
Q ss_pred ccccCCCCccccchHHHHHHHHHhhhc--CCCCCceEEEEccCCChhhhhhhhhhhcCCCccccCCCceeeCCCCceEEE
Q psy568 92 GVLDPNTREWTDGLFTHILRRIIDNVR--GEISKRQWIIFDGDVDPEWVENLNSVLDDNKLLTLPNGERLSLPPNIRIMF 169 (1614)
Q Consensus 92 G~~d~~t~eW~DGvls~i~r~~~~~~~--~~~~~~~WivfDG~vd~~WiE~lnsvLDdnk~L~L~nGeri~l~~~~~~iF 169 (1614)
. +..+-..-+|+..+... .....++.+|+|. +|..=.+.-|++| |+|-= -|+++-||.
T Consensus 84 -------~--~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~-ae~m~~~AaNaLL---KtLEE-------Pp~~t~fiL 143 (334)
T PRK07993 84 -------G--KSSLGVDAVREVTEKLYEHARLGGAKVVWLPD-AALLTDAAANALL---KTLEE-------PPENTWFFL 143 (334)
T ss_pred -------c--cccCCHHHHHHHHHHHhhccccCCceEEEEcc-hHhhCHHHHHHHH---HHhcC-------CCCCeEEEE
Confidence 0 01233445566544321 2234578888886 6666677778888 54432 366778899
Q ss_pred EeccccccCccccccceeEEecCcccchHHHHHHHHHh
Q psy568 170 EVQDLKYATLATVSRCGMIWFSEDVLSTEMIFENYLSR 207 (1614)
Q Consensus 170 Ev~dL~~ASPAtVSRcgmv~~~~~~l~~~~~~~~~~~~ 207 (1614)
-+++....-|..+|||-.+++.+-. ...+..|+..
T Consensus 144 ~t~~~~~lLpTIrSRCq~~~~~~~~---~~~~~~~L~~ 178 (334)
T PRK07993 144 ACREPARLLATLRSRCRLHYLAPPP---EQYALTWLSR 178 (334)
T ss_pred EECChhhChHHHHhccccccCCCCC---HHHHHHHHHH
Confidence 9999999988889999999998753 4567778854
No 439
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=95.69 E-value=0.02 Score=56.19 Aligned_cols=103 Identities=17% Similarity=0.152 Sum_probs=0.0
Q ss_pred EEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCCHHHHHhHhhcccceeecCCccccccccCCceEEEEeccCCCCC
Q psy568 419 LVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTPELLLKTFDHYCEYRKTPNGVILSPIQLGKWLVLFCDEINLPD 498 (1614)
Q Consensus 419 vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~~~~l~~~~~~~~~~~~~~~g~~~~p~~~gk~~vlfiDdin~p~ 498 (1614)
|.|+||||+|||++++.+++.+.... +.-...-.+.+.....+...-...+-+++ ||+.--.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~----------------~~~~~~~vy~~~~~~~~w~gY~~q~vvi~--DD~~~~~ 62 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHI----------------GEPTKDSVYTRNPGDKFWDGYQGQPVVII--DDFGQDN 62 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHh----------------ccCCCCcEEeCCCccchhhccCCCcEEEE--eecCccc
Q ss_pred ccccCcccHHHHHHHHHHcCceeeCCCCce---EeecCeEEEEeec
Q psy568 499 MDKYATQRVISFLRQLIEQRGFYRPADKQW---VSLERIQCVGACN 541 (1614)
Q Consensus 499 ~d~~g~q~~lelLrqlld~~~~~~~~~~~~---~~~~~~~~iaa~n 541 (1614)
.+. +.. ....+-++++...+..+-..-. .....-.+|+|+|
T Consensus 63 ~~~-~~~-~~~~l~~l~s~~~~~~~~a~~~~K~~~~~s~~vi~tsN 106 (107)
T PF00910_consen 63 DGY-NYS-DESELIRLISSNPFQPNMADLEDKGTPFNSKLVIITSN 106 (107)
T ss_pred ccc-chH-HHHHHHHHHhcCCcccccccHhhCCCccCCCEEEEcCC
No 440
>PF13245 AAA_19: Part of AAA domain
Probab=95.69 E-value=0.013 Score=53.35 Aligned_cols=39 Identities=41% Similarity=0.587 Sum_probs=25.5
Q ss_pred HHhcCCCEEE-ecCCCCchHHHHHHHHhcCC------CCceEEEEcc
Q psy568 412 WLAEHKPLVL-CGPPGSGKTMTLLSALRALP------DMEVVSLNFS 451 (1614)
Q Consensus 412 ~l~~~~~vLL-~Gp~GtGKT~lv~~~~~~l~------~~~~~~i~~s 451 (1614)
.+. +.++++ .||||||||+++.+.+..+. +..+..+.++
T Consensus 6 al~-~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t 51 (76)
T PF13245_consen 6 ALA-GSPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPT 51 (76)
T ss_pred HHh-hCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCC
Confidence 444 555554 99999999977766665543 3445555554
No 441
>KOG1029|consensus
Probab=95.67 E-value=5.9 Score=49.77 Aligned_cols=94 Identities=17% Similarity=0.186 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhh
Q psy568 1260 EETKDLITQLEKSIASYKDEYAQLIAQATAIKTDLDNVQAKFYEYAQLIAQATAIKTDLDNVQAKVERSMALLKSLGIER 1339 (1614)
Q Consensus 1260 ~~~~~~l~~~e~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~rl~~a~~l~~~L~~e~ 1339 (1614)
+....++.+++.+|+++++.+..+.-+++.+..++...|....+..+...+ |++....-+.-.++.+.-++.|+.|.
T Consensus 482 e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~~~~s~---L~aa~~~ke~irq~ikdqldelskE~ 558 (1118)
T KOG1029|consen 482 ELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQSAHKETTQRKSE---LEAARRKKELIRQAIKDQLDELSKET 558 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhccCcchHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555555555555555555555555555555555433322221111 12211122222233344455566666
Q ss_pred hhHHHHHHHHHHhhhhc
Q psy568 1340 ERWEATSETFRSQMATI 1356 (1614)
Q Consensus 1340 ~rW~~~~~~~~~~~~~l 1356 (1614)
..=.++++.++++++.+
T Consensus 559 esk~~eidi~n~qlkel 575 (1118)
T KOG1029|consen 559 ESKLNEIDIFNNQLKEL 575 (1118)
T ss_pred HHHHHhhhhHHHHHHHH
Confidence 66556666666666555
No 442
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=95.67 E-value=0.072 Score=66.35 Aligned_cols=80 Identities=21% Similarity=0.355 Sum_probs=49.8
Q ss_pred ccEEEeecCCCChHHHHHHHHHH-----cCCeEEEEEecCCCChhcHHHHHHHHHHHhc--------cCCCcEEEEEcCC
Q psy568 758 GHLLLIGVSGAGKTTLSRFVAFM-----NGLSVFQIRAHNKYTGADFDEDLRTVLRRSG--------CKNEKIAFLLDES 824 (1614)
Q Consensus 758 gh~LLvG~~GsGKtsl~rlaA~~-----~~~~~~~i~~~~~~~~~df~~~lk~~l~~ag--------~~~~~~v~ll~d~ 824 (1614)
.+++|.|++|+|||.|++.+++. .+..+..++. .+|...+...+.... .-...-++++||-
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~------~~f~~~~~~~l~~~~~~~~~~~~~~~~~dvLiIDDi 215 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSG------DEFARKAVDILQKTHKEIEQFKNEICQNDVLIIDDV 215 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH------HHHHHHHHHHHHHhhhHHHHHHHHhccCCEEEEecc
Confidence 35999999999999999988873 2466666543 345544443333210 0123447888998
Q ss_pred cccc------cchHHHHHHhhccCC
Q psy568 825 NVLE------SGFLERMNTLLANGE 843 (1614)
Q Consensus 825 ~i~~------~~~le~in~lL~~G~ 843 (1614)
|... +.+...+|.+...|.
T Consensus 216 q~l~~k~~~~e~lf~l~N~~~~~~k 240 (450)
T PRK14087 216 QFLSYKEKTNEIFFTIFNNFIENDK 240 (450)
T ss_pred ccccCCHHHHHHHHHHHHHHHHcCC
Confidence 7653 345666666665553
No 443
>PRK08727 hypothetical protein; Validated
Probab=95.65 E-value=0.19 Score=57.06 Aligned_cols=128 Identities=22% Similarity=0.286 Sum_probs=73.1
Q ss_pred cEEEeecCCCChHHHHHHHHHH---cCCeEEEEEecCCCChhcHHHHHHHHHHHhccCCCcEEEEEcCCcccccchHHHH
Q psy568 759 HLLLIGVSGAGKTTLSRFVAFM---NGLSVFQIRAHNKYTGADFDEDLRTVLRRSGCKNEKIAFLLDESNVLESGFLERM 835 (1614)
Q Consensus 759 h~LLvG~~GsGKtsl~rlaA~~---~~~~~~~i~~~~~~~~~df~~~lk~~l~~ag~~~~~~v~ll~d~~i~~~~~le~i 835 (1614)
.++|.|++|+|||.+++.+|+. .|.....+++ .++.+.+..++... . ..-++++||-+....
T Consensus 43 ~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~------~~~~~~~~~~~~~l--~-~~dlLiIDDi~~l~~------ 107 (233)
T PRK08727 43 WLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPL------QAAAGRLRDALEAL--E-GRSLVALDGLESIAG------ 107 (233)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeH------HHhhhhHHHHHHHH--h-cCCEEEEeCcccccC------
Confidence 4999999999999999987654 3555555553 33433344433322 1 223677777543210
Q ss_pred HHhhccCCCCCCCChhhHHHHHHHhHHHHHHcCCCCCCHHHHHHHHHHHHhhcceEEEEECCCChhhHHHhhhCcccccc
Q psy568 836 NTLLANGEIPGLFEGDEYTTLMTQCKEGAQREGLMLDSNEELYKWFTQQVMKNLHVVFTMNPSSEGLKDRAATSPALFNR 915 (1614)
Q Consensus 836 n~lL~~G~v~~Lf~~eE~~~i~~~~~~~~~~~~~~~~s~~~l~~~f~~rv~~nlhivl~~sp~~~~~r~~~~~~PaL~~~ 915 (1614)
.. .....+|..+-.+-.+..+++++-+-....+ -...|.|.++
T Consensus 108 --------------~~--------------------~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l---~~~~~dL~SR 150 (233)
T PRK08727 108 --------------QR--------------------EDEVALFDFHNRARAAGITLLYTARQMPDGL---ALVLPDLRSR 150 (233)
T ss_pred --------------Ch--------------------HHHHHHHHHHHHHHHcCCeEEEECCCChhhh---hhhhHHHHHH
Confidence 00 0112334322222223556777665322222 2346888877
Q ss_pred ---ceecccCCCcHHHHHHHHHHhhc
Q psy568 916 ---CVLNWFGDWSDTALYQVAKEFTS 938 (1614)
Q Consensus 916 ---~~i~wf~~W~~eaL~~va~~~l~ 938 (1614)
|.+.-+++-..+.+..+..+...
T Consensus 151 l~~~~~~~l~~~~~e~~~~iL~~~a~ 176 (233)
T PRK08727 151 LAQCIRIGLPVLDDVARAAVLRERAQ 176 (233)
T ss_pred HhcCceEEecCCCHHHHHHHHHHHHH
Confidence 77888888888888888876443
No 444
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=95.62 E-value=0.033 Score=72.74 Aligned_cols=69 Identities=23% Similarity=0.372 Sum_probs=48.4
Q ss_pred ccCCccEEEeecCCCChHHHHHHHHHHcCCeEEEEEecCCCC--hhcHHHHHHHHHHHhccCCCcEEEEEcCC
Q psy568 754 RQPQGHLLLIGVSGAGKTTLSRFVAFMNGLSVFQIRAHNKYT--GADFDEDLRTVLRRSGCKNEKIAFLLDES 824 (1614)
Q Consensus 754 ~~p~gh~LLvG~~GsGKtsl~rlaA~~~~~~~~~i~~~~~~~--~~df~~~lk~~l~~ag~~~~~~v~ll~d~ 824 (1614)
..|+| ++|+||+|+|||++++.+|.-++.+++.+..+.-.. ...-...++.++..+ ....|+++++||-
T Consensus 183 ~~~~g-ill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~g~~~~~~~~~f~~a-~~~~P~IifIDEi 253 (644)
T PRK10733 183 KIPKG-VLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQA-KKAAPCIIFIDEI 253 (644)
T ss_pred CCCCc-EEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhhcccHHHHHHHHHHH-HhcCCcEEEehhH
Confidence 44666 999999999999999999999999999886543211 011112345556555 3456788888873
No 445
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=95.60 E-value=0.071 Score=66.12 Aligned_cols=32 Identities=25% Similarity=0.290 Sum_probs=25.9
Q ss_pred cEEEeecCCCChHHHHHHHHHHc-----CCeEEEEEe
Q psy568 759 HLLLIGVSGAGKTTLSRFVAFMN-----GLSVFQIRA 790 (1614)
Q Consensus 759 h~LLvG~~GsGKtsl~rlaA~~~-----~~~~~~i~~ 790 (1614)
+++|.|++|+|||.|++.+|... +..++.++.
T Consensus 138 ~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~ 174 (405)
T TIGR00362 138 PLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSS 174 (405)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEH
Confidence 58999999999999999888654 566776653
No 446
>KOG0739|consensus
Probab=95.60 E-value=0.018 Score=63.85 Aligned_cols=67 Identities=21% Similarity=0.377 Sum_probs=49.9
Q ss_pred cCCccEEEeecCCCChHHHHHHHHHHcCCeEEEEEecCCCChhcHHHH----HHHHHHHhccCCCcEEEEEcCC
Q psy568 755 QPQGHLLLIGVSGAGKTTLSRFVAFMNGLSVFQIRAHNKYTGADFDED----LRTVLRRSGCKNEKIAFLLDES 824 (1614)
Q Consensus 755 ~p~gh~LLvG~~GsGKtsl~rlaA~~~~~~~~~i~~~~~~~~~df~~~----lk~~l~~ag~~~~~~v~ll~d~ 824 (1614)
.|...+||.||+|+||+-|++.+|.-++.++|++.-+.. ++-|.++ +|+++.- ...++|..+++|+-
T Consensus 164 ~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDL--vSKWmGESEkLVknLFem-ARe~kPSIIFiDEi 234 (439)
T KOG0739|consen 164 KPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDL--VSKWMGESEKLVKNLFEM-ARENKPSIIFIDEI 234 (439)
T ss_pred CcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHH--HHHHhccHHHHHHHHHHH-HHhcCCcEEEeehh
Confidence 666669999999999999999999999999999863322 3445443 3444444 46888888888763
No 447
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=95.60 E-value=0.021 Score=63.01 Aligned_cols=47 Identities=23% Similarity=0.295 Sum_probs=32.5
Q ss_pred EEEEecCCCCChhhHHHHHHHHHHHhhcCCceEEEeCCCCCCcCccccc
Q psy568 45 GLMMVGPSGSGKSTAWKVLLKALERYEGVEGVAHIIDPKAISKEALYGV 93 (1614)
Q Consensus 45 gVmlvG~~gsGKTt~~~~L~~al~~~~~~~~~~~~inPkais~~eLyG~ 93 (1614)
-|+|.|++||||||..+.|++.++.. |.. +..+-.|.+-...+++..
T Consensus 5 ~IvieG~~GsGKsT~~~~L~~~l~~~-g~~-v~~~~~~~~~~~~~~i~~ 51 (195)
T TIGR00041 5 FIVIEGIDGAGKTTQANLLKKLLQEN-GYD-VLFTREPGGTPIGEKIRE 51 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHc-CCe-EEEEeCCCCChHHHHHHH
Confidence 48999999999999999999998763 333 233445654444444433
No 448
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=95.59 E-value=0.018 Score=68.29 Aligned_cols=138 Identities=20% Similarity=0.235 Sum_probs=80.0
Q ss_pred cEEEEecCCCCChhhHHHHHHHHHHHhhcCCceEEEe---------------------------------CCCCCCcCcc
Q psy568 44 HGLMMVGPSGSGKSTAWKVLLKALERYEGVEGVAHII---------------------------------DPKAISKEAL 90 (1614)
Q Consensus 44 ~gVmlvG~~gsGKTt~~~~L~~al~~~~~~~~~~~~i---------------------------------nPkais~~eL 90 (1614)
.||+|.|++||||||+.+.+.+.+....-.+..-+.. =|-.++-++|
T Consensus 39 ~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l 118 (350)
T CHL00081 39 GGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPSDPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRV 118 (350)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCCChhhhchhhhhhhcccccccceeccccceecCCCCchhhc
Confidence 6999999999999999999998876432110000001 1345677888
Q ss_pred cccccCCCCccccchHHHHHHHHHhhhcCCCCCceEEEEcc--CCChhhhhhhhhhhcCCCccccCCCceeeCCCCceEE
Q psy568 91 YGVLDPNTREWTDGLFTHILRRIIDNVRGEISKRQWIIFDG--DVDPEWVENLNSVLDDNKLLTLPNGERLSLPPNIRIM 168 (1614)
Q Consensus 91 yG~~d~~t~eW~DGvls~i~r~~~~~~~~~~~~~~WivfDG--~vd~~WiE~lnsvLDdnk~L~L~nGeri~l~~~~~~i 168 (1614)
||.+|... .+..|.. .++... . .....--+++|. ..++.--..|-.+|++...-.-..|...++|..+-++
T Consensus 119 ~G~iD~~~-al~~g~~--~~~~Gl--L--~~A~~GiL~lDEInrL~~~~Q~~LLeam~e~~~~ier~G~s~~~p~rfivi 191 (350)
T CHL00081 119 CGTIDIEK-ALTEGVK--AFEPGL--L--AKANRGILYVDEVNLLDDHLVDILLDSAASGWNTVEREGISIRHPARFVLV 191 (350)
T ss_pred cCcccHHH-HhhcCcc--cccCCe--e--eecCCCEEEecChHhCCHHHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEE
Confidence 88888643 4444421 111100 0 001235677774 4566555556666666432222456667777766666
Q ss_pred EEecccc-ccCccccccceeE
Q psy568 169 FEVQDLK-YATLATVSRCGMI 188 (1614)
Q Consensus 169 FEv~dL~-~ASPAtVSRcgmv 188 (1614)
....-.. ...|+..-|.+|.
T Consensus 192 aT~np~eg~l~~~LldRf~l~ 212 (350)
T CHL00081 192 GSGNPEEGELRPQLLDRFGMH 212 (350)
T ss_pred eccCcccCCCCHHHHHHhCce
Confidence 6333222 3778888999864
No 449
>PRK06893 DNA replication initiation factor; Validated
Probab=95.58 E-value=0.14 Score=58.09 Aligned_cols=121 Identities=13% Similarity=0.133 Sum_probs=65.9
Q ss_pred cEEEeecCCCChHHHHHHHHHHc---CCeEEEEEecCCCChhcHHHHHHHHHHHhccCCCcEEEEEcCCcccc--c----
Q psy568 759 HLLLIGVSGAGKTTLSRFVAFMN---GLSVFQIRAHNKYTGADFDEDLRTVLRRSGCKNEKIAFLLDESNVLE--S---- 829 (1614)
Q Consensus 759 h~LLvG~~GsGKtsl~rlaA~~~---~~~~~~i~~~~~~~~~df~~~lk~~l~~ag~~~~~~v~ll~d~~i~~--~---- 829 (1614)
.++|+|++|+|||.|++.+|+.. +.....+++... ..+... ++.. .. ..-++++||-+... +
T Consensus 41 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~---~~~~~~---~~~~--~~-~~dlLilDDi~~~~~~~~~~~ 111 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKS---QYFSPA---VLEN--LE-QQDLVCLDDLQAVIGNEEWEL 111 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHh---hhhhHH---HHhh--cc-cCCEEEEeChhhhcCChHHHH
Confidence 47899999999999999998763 455555554321 111111 2211 11 23478888876532 2
Q ss_pred chHHHHHHhhccCCCCCCC----ChhhHHHHHHHhHHHHHH---cCCCCCCHHHHHHHHHHHHhhc
Q psy568 830 GFLERMNTLLANGEIPGLF----EGDEYTTLMTQCKEGAQR---EGLMLDSNEELYKWFTQQVMKN 888 (1614)
Q Consensus 830 ~~le~in~lL~~G~v~~Lf----~~eE~~~i~~~~~~~~~~---~~~~~~s~~~l~~~f~~rv~~n 888 (1614)
.+++.+|.+...|...-++ .++++......++..... ......+.+..+..+.+++...
T Consensus 112 ~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~ 177 (229)
T PRK06893 112 AIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQR 177 (229)
T ss_pred HHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHc
Confidence 3556677666555422122 334443333333332221 1122357788888887777643
No 450
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.58 E-value=0.017 Score=66.11 Aligned_cols=94 Identities=21% Similarity=0.347 Sum_probs=52.4
Q ss_pred HHhcCCCEEEecCCCCchHHHHHHHHhcCC--CCceEEEEcccCCCHHHHHhHhhcccceeecCCccccccccCCceEEE
Q psy568 412 WLAEHKPLVLCGPPGSGKTMTLLSALRALP--DMEVVSLNFSSATTPELLLKTFDHYCEYRKTPNGVILSPIQLGKWLVL 489 (1614)
Q Consensus 412 ~l~~~~~vLL~Gp~GtGKT~lv~~~~~~l~--~~~~~~i~~s~~t~~~~l~~~~~~~~~~~~~~~g~~~~p~~~gk~~vl 489 (1614)
.+..+.+++|+||||+|||.++..+...+. +..+..++. ++ +...+...... ......+..-. .+-=|+
T Consensus 101 ~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~-----~e-l~~~Lk~~~~~-~~~~~~l~~~l--~~~dlL 171 (254)
T COG1484 101 FFERGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITA-----PD-LLSKLKAAFDE-GRLEEKLLREL--KKVDLL 171 (254)
T ss_pred HhccCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEH-----HH-HHHHHHHHHhc-CchHHHHHHHh--hcCCEE
Confidence 344899999999999999999988887664 334444433 22 22222221111 00001111111 222467
Q ss_pred EeccCCCCCccccCcccHHHHHHHH
Q psy568 490 FCDEINLPDMDKYATQRVISFLRQL 514 (1614)
Q Consensus 490 fiDdin~p~~d~~g~q~~lelLrql 514 (1614)
+|||+-....+.++....++++-+.
T Consensus 172 IiDDlG~~~~~~~~~~~~~q~I~~r 196 (254)
T COG1484 172 IIDDIGYEPFSQEEADLLFQLISRR 196 (254)
T ss_pred EEecccCccCCHHHHHHHHHHHHHH
Confidence 7799998777766555444444443
No 451
>PF13173 AAA_14: AAA domain
Probab=95.57 E-value=0.03 Score=57.04 Aligned_cols=83 Identities=25% Similarity=0.268 Sum_probs=52.2
Q ss_pred ccEEEeecCCCChHHHHHHHHHHc--CCeEEEEEecCCCChhcHHHHHHHHHHHhccCCCcEEEEEcCCcccccchHHHH
Q psy568 758 GHLLLIGVSGAGKTTLSRFVAFMN--GLSVFQIRAHNKYTGADFDEDLRTVLRRSGCKNEKIAFLLDESNVLESGFLERM 835 (1614)
Q Consensus 758 gh~LLvG~~GsGKtsl~rlaA~~~--~~~~~~i~~~~~~~~~df~~~lk~~l~~ag~~~~~~v~ll~d~~i~~~~~le~i 835 (1614)
.-++|.|+.|+|||++++-.+.-. +.++..+++...........++...+.+. ..+++..+++||-|-. +.|.+.+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~iDEiq~~-~~~~~~l 80 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPDLLEYFLEL-IKPGKKYIFIDEIQYL-PDWEDAL 80 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhhhHHHHHHh-hccCCcEEEEehhhhh-ccHHHHH
Confidence 458899999999999998777443 36677776543322110001133444444 3346677888998876 4677778
Q ss_pred HHhhccC
Q psy568 836 NTLLANG 842 (1614)
Q Consensus 836 n~lL~~G 842 (1614)
+.+...+
T Consensus 81 k~l~d~~ 87 (128)
T PF13173_consen 81 KFLVDNG 87 (128)
T ss_pred HHHHHhc
Confidence 8777554
No 452
>PRK08116 hypothetical protein; Validated
Probab=95.57 E-value=0.12 Score=59.95 Aligned_cols=42 Identities=29% Similarity=0.410 Sum_probs=30.8
Q ss_pred cEEEeecCCCChHHHHHHHHHH---cCCeEEEEEecCCCChhcHHHHHHHH
Q psy568 759 HLLLIGVSGAGKTTLSRFVAFM---NGLSVFQIRAHNKYTGADFDEDLRTV 806 (1614)
Q Consensus 759 h~LLvG~~GsGKtsl~rlaA~~---~~~~~~~i~~~~~~~~~df~~~lk~~ 806 (1614)
.++|.|++|+|||.|+..+|.- .|..+..++ ..++.+.++..
T Consensus 116 gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~------~~~ll~~i~~~ 160 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAACIANELIEKGVPVIFVN------FPQLLNRIKST 160 (268)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE------HHHHHHHHHHH
Confidence 3999999999999999988875 367777665 34455555444
No 453
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=95.56 E-value=0.1 Score=57.98 Aligned_cols=81 Identities=21% Similarity=0.337 Sum_probs=52.6
Q ss_pred cCCccEEEeecCCCChHHHHHHHHHH---cCCeEEEEEecCCCChhcHHHHHHHHHHHhccCCCcEEEEEcCCcccc-cc
Q psy568 755 QPQGHLLLIGVSGAGKTTLSRFVAFM---NGLSVFQIRAHNKYTGADFDEDLRTVLRRSGCKNEKIAFLLDESNVLE-SG 830 (1614)
Q Consensus 755 ~p~gh~LLvG~~GsGKtsl~rlaA~~---~~~~~~~i~~~~~~~~~df~~~lk~~l~~ag~~~~~~v~ll~d~~i~~-~~ 830 (1614)
.|..|+||.|..|+||||++|.+... .|..++++.-..-.+ |-.++....-...+.++++||-..-. +.
T Consensus 50 ~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~~-------l~~l~~~l~~~~~kFIlf~DDLsFe~~d~ 122 (249)
T PF05673_consen 50 LPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLGD-------LPELLDLLRDRPYKFILFCDDLSFEEGDT 122 (249)
T ss_pred CCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhcc-------HHHHHHHHhcCCCCEEEEecCCCCCCCcH
Confidence 58889999999999999999977764 355666654222222 33333333345567888888865532 33
Q ss_pred hHHHHHHhhccC
Q psy568 831 FLERMNTLLANG 842 (1614)
Q Consensus 831 ~le~in~lL~~G 842 (1614)
-.-.+-++|..|
T Consensus 123 ~yk~LKs~LeGg 134 (249)
T PF05673_consen 123 EYKALKSVLEGG 134 (249)
T ss_pred HHHHHHHHhcCc
Confidence 445677777665
No 454
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=95.54 E-value=0.035 Score=66.50 Aligned_cols=35 Identities=29% Similarity=0.527 Sum_probs=32.2
Q ss_pred CccEEEeecCCCChHHHHHHHHHHcCCeEEEEEec
Q psy568 757 QGHLLLIGVSGAGKTTLSRFVAFMNGLSVFQIRAH 791 (1614)
Q Consensus 757 ~gh~LLvG~~GsGKtsl~rlaA~~~~~~~~~i~~~ 791 (1614)
.+|+||+||+|+|||++++.+|...+.+++.++.+
T Consensus 50 ~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t 84 (443)
T PRK05201 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEAT 84 (443)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCChheeecch
Confidence 37899999999999999999999999999998754
No 455
>KOG0980|consensus
Probab=95.53 E-value=4.8 Score=51.67 Aligned_cols=58 Identities=17% Similarity=0.217 Sum_probs=22.6
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy568 1230 SYADMLKKVEPLRLELKSLEVQASENKAKGEETKDLITQLEKSIASYKDEYAQLIAQA 1287 (1614)
Q Consensus 1230 ~y~~v~~~v~P~~~~l~~~~~~~~~~~~~l~~~~~~l~~~e~~l~~l~~~~~~~~~~~ 1287 (1614)
+|.++.+.+.-.++...+++++..+....+++++.....++.+.+...+.++.+..|.
T Consensus 446 K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El 503 (980)
T KOG0980|consen 446 KYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQEL 503 (980)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3444444444333333334444444444444444333333333333333333333333
No 456
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=95.51 E-value=0.066 Score=59.14 Aligned_cols=147 Identities=20% Similarity=0.214 Sum_probs=81.3
Q ss_pred HHHHHHHHHhcCC-CEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCCH-HHH----HhHhhcccceeecC-----
Q psy568 405 HESLLYTWLAEHK-PLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTP-ELL----LKTFDHYCEYRKTP----- 473 (1614)
Q Consensus 405 ~~~ll~~~l~~~~-~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~~-~~l----~~~~~~~~~~~~~~----- 473 (1614)
..-.+...+..|+ -+.++|+.|+|||++.+.++..+.+.....+-....+-+ ..+ ..-+++ .++...
T Consensus 39 ~l~~l~~~i~d~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~--~p~~~~~~~~e 116 (269)
T COG3267 39 ALLMLHAAIADGQGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLES--QPKVNVNAVLE 116 (269)
T ss_pred HHHHHHHHHhcCCceEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhcc--CccchhHHHHH
Confidence 3444556666777 678999999999999986777775554443444433322 222 222222 111100
Q ss_pred --CccccccccCCce-EEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCC
Q psy568 474 --NGVILSPIQLGKW-LVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKP 550 (1614)
Q Consensus 474 --~g~~~~p~~~gk~-~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~ 550 (1614)
...+..-...|++ .++++||.+- -..+++|.||-+.+.-.=|. . .+.++-. |...
T Consensus 117 ~~~~~L~al~~~g~r~v~l~vdEah~------L~~~~le~Lrll~nl~~~~~-------~--~l~ivL~-------Gqp~ 174 (269)
T COG3267 117 QIDRELAALVKKGKRPVVLMVDEAHD------LNDSALEALRLLTNLEEDSS-------K--LLSIVLI-------GQPK 174 (269)
T ss_pred HHHHHHHHHHHhCCCCeEEeehhHhh------hChhHHHHHHHHHhhccccc-------C--ceeeeec-------CCcc
Confidence 0111122234566 8999999998 44458999999876421111 1 1233322 3334
Q ss_pred Ccccc--------cccccE-EEecCCChhHHHHH
Q psy568 551 LSHRF--------LRHVPV-IYVDYPGETSLKQI 575 (1614)
Q Consensus 551 l~~r~--------~r~f~~-i~i~~p~~~~l~~I 575 (1614)
|.+|+ -.|+.+ |.+++.+.++...-
T Consensus 175 L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~t~~y 208 (269)
T COG3267 175 LRPRLRLPVLRELEQRIDIRIELPPLTEAETGLY 208 (269)
T ss_pred cchhhchHHHHhhhheEEEEEecCCcChHHHHHH
Confidence 55543 347777 88888877654433
No 457
>KOG0978|consensus
Probab=95.49 E-value=12 Score=48.20 Aligned_cols=124 Identities=20% Similarity=0.172 Sum_probs=63.8
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q psy568 1226 IAQISYADMLKKVEPLRLELKSLEVQASENKAKGEETKDLITQLEKSIASYKDEYAQLIAQATAIKTDLDNVQAKFYEYA 1305 (1614)
Q Consensus 1226 ~Ai~~y~~v~~~v~P~~~~l~~~~~~~~~~~~~l~~~~~~l~~~e~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 1305 (1614)
..|.+-........-++++...++.++..........+..+..+++++..++.....+..+...++.-++....+..++.
T Consensus 486 klm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~ 565 (698)
T KOG0978|consen 486 KLMSERIKANQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAK 565 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444555555555555555555555555555555555555555555555554444444333333333322222
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHh
Q psy568 1306 QLIAQATAIKTDLDNVQAKVERSMALLKSLGIERERWEATSETFRSQ 1352 (1614)
Q Consensus 1306 ~~~~~~~~l~~~~~~~~~rl~~a~~l~~~L~~e~~rW~~~~~~~~~~ 1352 (1614)
...+.++.+++.++.+|+.++.-+..++.|.+.-......++.+
T Consensus 566 ---~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE 609 (698)
T KOG0978|consen 566 ---QSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEE 609 (698)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22334566666677777777777766666555444444444433
No 458
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=95.46 E-value=0.011 Score=59.63 Aligned_cols=22 Identities=50% Similarity=0.736 Sum_probs=0.0
Q ss_pred EEEecCCCCChhhHHHHHHHHH
Q psy568 46 LMMVGPSGSGKSTAWKVLLKAL 67 (1614)
Q Consensus 46 VmlvG~~gsGKTt~~~~L~~al 67 (1614)
|+|+|||||||||+.+.|++.+
T Consensus 2 I~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
No 459
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=95.46 E-value=20 Score=50.83 Aligned_cols=12 Identities=42% Similarity=0.883 Sum_probs=7.5
Q ss_pred cCCcEEEeeccc
Q psy568 1482 FGNPLLVQDVEN 1493 (1614)
Q Consensus 1482 ~G~~lli~dve~ 1493 (1614)
+|.+++++|++.
T Consensus 613 l~~t~Iv~~l~~ 624 (1163)
T COG1196 613 LGDTLVVDDLEQ 624 (1163)
T ss_pred hCCeEEecCHHH
Confidence 466777766643
No 460
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=95.45 E-value=0.05 Score=64.91 Aligned_cols=127 Identities=20% Similarity=0.228 Sum_probs=77.0
Q ss_pred CCCEEEecCCCCchHHHHHHHHhcCCC----------------------C-ceEEEEcc---cCCCHHHHHhHhhcccce
Q psy568 416 HKPLVLCGPPGSGKTMTLLSALRALPD----------------------M-EVVSLNFS---SATTPELLLKTFDHYCEY 469 (1614)
Q Consensus 416 ~~~vLL~Gp~GtGKT~lv~~~~~~l~~----------------------~-~~~~i~~s---~~t~~~~l~~~~~~~~~~ 469 (1614)
.+..|+.||+|+||++++..+++.+.. + .+..+.-. ...+.+.+....+ .
T Consensus 24 ~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~-~--- 99 (334)
T PRK07993 24 HHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTE-K--- 99 (334)
T ss_pred ceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHHHHHHHHH-H---
Confidence 357889999999999999998876521 0 11112111 1233444443332 1
Q ss_pred eecCCccccccccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCC
Q psy568 470 RKTPNGVILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRK 549 (1614)
Q Consensus 470 ~~~~~g~~~~p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~ 549 (1614)
....|. .|++=|++||+.+.-. .+....+|.-+ |. | .+++.||-++..+.
T Consensus 100 ------~~~~~~-~g~~kV~iI~~ae~m~-----~~AaNaLLKtL-EE-----P-------p~~t~fiL~t~~~~----- 149 (334)
T PRK07993 100 ------LYEHAR-LGGAKVVWLPDAALLT-----DAAANALLKTL-EE-----P-------PENTWFFLACREPA----- 149 (334)
T ss_pred ------Hhhccc-cCCceEEEEcchHhhC-----HHHHHHHHHHh-cC-----C-------CCCeEEEEEECChh-----
Confidence 112333 4566777789888622 22344455444 42 1 13456666665444
Q ss_pred CCcccccccccEEEecCCChhHHHHHH
Q psy568 550 PLSHRFLRHVPVIYVDYPGETSLKQIY 576 (1614)
Q Consensus 550 ~l~~r~~r~f~~i~i~~p~~~~l~~I~ 576 (1614)
.|.+-..+|+..+.++.|+.+++..-.
T Consensus 150 ~lLpTIrSRCq~~~~~~~~~~~~~~~L 176 (334)
T PRK07993 150 RLLATLRSRCRLHYLAPPPEQYALTWL 176 (334)
T ss_pred hChHHHHhccccccCCCCCHHHHHHHH
Confidence 688899999999999999988877654
No 461
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=95.43 E-value=0.023 Score=67.69 Aligned_cols=82 Identities=15% Similarity=0.167 Sum_probs=49.2
Q ss_pred HhcCCCEEEecCCCCchHHHHHHHHhcCCCCc---eEEEEcccC--CCHHHHHhHhhcccceeecCC-------------
Q psy568 413 LAEHKPLVLCGPPGSGKTMTLLSALRALPDME---VVSLNFSSA--TTPELLLKTFDHYCEYRKTPN------------- 474 (1614)
Q Consensus 413 l~~~~~vLL~Gp~GtGKT~lv~~~~~~l~~~~---~~~i~~s~~--t~~~~l~~~~~~~~~~~~~~~------------- 474 (1614)
+..|+-++++||+|+|||++++.+.+...... ...+-.+.. .+..+++..+.+.........
T Consensus 165 ig~Gq~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~ 244 (415)
T TIGR00767 165 IGKGQRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVI 244 (415)
T ss_pred eCCCCEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHH
Confidence 34689999999999999999998888653321 223333322 455666666522111111000
Q ss_pred --ccccccccCCceEEEEeccCCC
Q psy568 475 --GVILSPIQLGKWLVLFCDEINL 496 (1614)
Q Consensus 475 --g~~~~p~~~gk~~vlfiDdin~ 496 (1614)
.... ...|+..|+|+|+++.
T Consensus 245 e~Ae~~--~~~GkdVVLlIDEitR 266 (415)
T TIGR00767 245 EKAKRL--VEHKKDVVILLDSITR 266 (415)
T ss_pred HHHHHH--HHcCCCeEEEEEChhH
Confidence 0001 1357889999999995
No 462
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=95.43 E-value=0.17 Score=57.28 Aligned_cols=66 Identities=21% Similarity=0.238 Sum_probs=41.1
Q ss_pred cCCccEEEeecCCCChHHHHHHHHHHc---CCeEEEEEecCCCChhcHHHHHHHHHHHhccCCCcEEEEEcCCccccc
Q psy568 755 QPQGHLLLIGVSGAGKTTLSRFVAFMN---GLSVFQIRAHNKYTGADFDEDLRTVLRRSGCKNEKIAFLLDESNVLES 829 (1614)
Q Consensus 755 ~p~gh~LLvG~~GsGKtsl~rlaA~~~---~~~~~~i~~~~~~~~~df~~~lk~~l~~ag~~~~~~v~ll~d~~i~~~ 829 (1614)
...++++|+|++|||||++++.++..+ +.++..+++..- .+....++.. .. +..++++||-+..+.
T Consensus 36 ~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~------~~~~~~~~~~--~~-~~~lLvIDdi~~l~~ 104 (226)
T TIGR03420 36 KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAEL------AQADPEVLEG--LE-QADLVCLDDVEAIAG 104 (226)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHH------HHhHHHHHhh--cc-cCCEEEEeChhhhcC
Confidence 346689999999999999999988654 456666654322 1211122211 12 223777888776543
No 463
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=95.39 E-value=1.4 Score=45.55 Aligned_cols=121 Identities=17% Similarity=0.283 Sum_probs=58.9
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhhhhHHHHHHHHHHH
Q psy568 1231 YADMLKKVEPLRLELKSLEVQASENKAKGEETKDLITQLEKSIASYKDEYAQLIAQ---ATAIKTDLDNVQAKFYEYAQL 1307 (1614)
Q Consensus 1231 y~~v~~~v~P~~~~l~~~~~~~~~~~~~l~~~~~~l~~~e~~l~~l~~~~~~~~~~---~~~l~~~l~~~~~~~~~~~~~ 1307 (1614)
+..+-..++-+.++..+.+.++...+.+...++..+..++.++..++..+...... .+.+...+.-++..+...+..
T Consensus 16 ~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~ 95 (143)
T PF12718_consen 16 AEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKK 95 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444444444444444444433332221 112222222222222222111
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhh
Q psy568 1308 IAQATAIKTDLDNVQAKVERSMALLKSLGIERERWEATSETFRSQMA 1354 (1614)
Q Consensus 1308 ~~~~~~l~~~~~~~~~rl~~a~~l~~~L~~e~~rW~~~~~~~~~~~~ 1354 (1614)
..+ ....+..+..+.....+=+..|..+...|...+..+..++.
T Consensus 96 L~e---~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~~ 139 (143)
T PF12718_consen 96 LKE---TTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKYK 139 (143)
T ss_pred HHH---HHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 111 13344455566666677778888899999999888887764
No 464
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=95.38 E-value=0.019 Score=67.93 Aligned_cols=28 Identities=21% Similarity=0.450 Sum_probs=24.2
Q ss_pred HhcCCCEEEecCCCCchHHHHHHHHhcC
Q psy568 413 LAEHKPLVLCGPPGSGKTMTLLSALRAL 440 (1614)
Q Consensus 413 l~~~~~vLL~Gp~GtGKT~lv~~~~~~l 440 (1614)
+..|+-.+++||+|+|||++++.+....
T Consensus 166 IGkGQR~lIvgppGvGKTTLaK~Ian~I 193 (416)
T PRK09376 166 IGKGQRGLIVAPPKAGKTVLLQNIANSI 193 (416)
T ss_pred cccCceEEEeCCCCCChhHHHHHHHHHH
Confidence 3468899999999999999999988755
No 465
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=95.37 E-value=0.012 Score=67.72 Aligned_cols=24 Identities=42% Similarity=0.540 Sum_probs=22.2
Q ss_pred EEEecCCCCChhhHHHHHHHHHHH
Q psy568 46 LMMVGPSGSGKSTAWKVLLKALER 69 (1614)
Q Consensus 46 VmlvG~~gsGKTt~~~~L~~al~~ 69 (1614)
|+++|+|||||||+.+.|++.+..
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~ 25 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSE 25 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH
Confidence 789999999999999999998864
No 466
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=95.35 E-value=0.032 Score=66.83 Aligned_cols=35 Identities=29% Similarity=0.527 Sum_probs=32.2
Q ss_pred CccEEEeecCCCChHHHHHHHHHHcCCeEEEEEec
Q psy568 757 QGHLLLIGVSGAGKTTLSRFVAFMNGLSVFQIRAH 791 (1614)
Q Consensus 757 ~gh~LLvG~~GsGKtsl~rlaA~~~~~~~~~i~~~ 791 (1614)
.+|+||+||+|+|||+++|.+|...+.+++.+..+
T Consensus 47 p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat 81 (441)
T TIGR00390 47 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEAT 81 (441)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecc
Confidence 36899999999999999999999999999998854
No 467
>KOG0727|consensus
Probab=95.34 E-value=0.035 Score=59.99 Aligned_cols=63 Identities=32% Similarity=0.545 Sum_probs=45.8
Q ss_pred hccCCccEEEeecCCCChHHHHHHHHHHcCCeEEEEEecCCCChhcHHH--------HHHHHHHHhccCCCcEEEEEcC
Q psy568 753 FRQPQGHLLLIGVSGAGKTTLSRFVAFMNGLSVFQIRAHNKYTGADFDE--------DLRTVLRRSGCKNEKIAFLLDE 823 (1614)
Q Consensus 753 l~~p~gh~LLvG~~GsGKtsl~rlaA~~~~~~~~~i~~~~~~~~~df~~--------~lk~~l~~ag~~~~~~v~ll~d 823 (1614)
+.-|+| +||.||+|||||-|++..|+-....++.+. .++|.. -.+.+++-|. .+-|..+++|+
T Consensus 186 idpprg-vllygppg~gktml~kava~~t~a~firvv------gsefvqkylgegprmvrdvfrlak-enapsiifide 256 (408)
T KOG0727|consen 186 IDPPRG-VLLYGPPGTGKTMLAKAVANHTTAAFIRVV------GSEFVQKYLGEGPRMVRDVFRLAK-ENAPSIIFIDE 256 (408)
T ss_pred CCCCcc-eEEeCCCCCcHHHHHHHHhhccchheeeec------cHHHHHHHhccCcHHHHHHHHHHh-ccCCcEEEeeh
Confidence 456788 999999999999999999998888887764 345533 2355666653 55566666665
No 468
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=95.33 E-value=0.04 Score=58.13 Aligned_cols=26 Identities=31% Similarity=0.450 Sum_probs=23.2
Q ss_pred cCCCEEEecCCCCchHHHHHHHHhcC
Q psy568 415 EHKPLVLCGPPGSGKTMTLLSALRAL 440 (1614)
Q Consensus 415 ~~~~vLL~Gp~GtGKT~lv~~~~~~l 440 (1614)
.|..++|.||+|+||||+++.++...
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhc
Confidence 57789999999999999999998765
No 469
>PRK12377 putative replication protein; Provisional
Probab=95.30 E-value=0.054 Score=61.51 Aligned_cols=77 Identities=18% Similarity=0.202 Sum_probs=46.4
Q ss_pred CccEEEeecCCCChHHHHHHHHHHc---CCeEEEEEecCCCChhcHHHHHHHHHHHhcc-------CCCcEEEEEcCCcc
Q psy568 757 QGHLLLIGVSGAGKTTLSRFVAFMN---GLSVFQIRAHNKYTGADFDEDLRTVLRRSGC-------KNEKIAFLLDESNV 826 (1614)
Q Consensus 757 ~gh~LLvG~~GsGKtsl~rlaA~~~---~~~~~~i~~~~~~~~~df~~~lk~~l~~ag~-------~~~~~v~ll~d~~i 826 (1614)
.++++|.|++|+|||.|+..+|..+ |..+..++ ..++.+.++..+..... -.+.-++++||-..
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~------~~~l~~~l~~~~~~~~~~~~~l~~l~~~dLLiIDDlg~ 174 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVT------VPDVMSRLHESYDNGQSGEKFLQELCKVDLLVLDEIGI 174 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEE------HHHHHHHHHHHHhccchHHHHHHHhcCCCEEEEcCCCC
Confidence 4579999999999999999888654 56665554 34666666655422100 12334677787633
Q ss_pred c--ccchHHHHHHhh
Q psy568 827 L--ESGFLERMNTLL 839 (1614)
Q Consensus 827 ~--~~~~le~in~lL 839 (1614)
. ++.-.+.+.+++
T Consensus 175 ~~~s~~~~~~l~~ii 189 (248)
T PRK12377 175 QRETKNEQVVLNQII 189 (248)
T ss_pred CCCCHHHHHHHHHHH
Confidence 2 222334444444
No 470
>PRK13948 shikimate kinase; Provisional
Probab=95.30 E-value=0.14 Score=55.36 Aligned_cols=35 Identities=20% Similarity=0.270 Sum_probs=31.1
Q ss_pred cCCccEEEeecCCCChHHHHHHHHHHcCCeEEEEE
Q psy568 755 QPQGHLLLIGVSGAGKTTLSRFVAFMNGLSVFQIR 789 (1614)
Q Consensus 755 ~p~gh~LLvG~~GsGKtsl~rlaA~~~~~~~~~i~ 789 (1614)
.|..+++|+|..||||||+.+.+|..+|++++...
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D 42 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD 42 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC
Confidence 35578999999999999999999999999988654
No 471
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=95.27 E-value=0.22 Score=58.22 Aligned_cols=138 Identities=10% Similarity=0.148 Sum_probs=84.0
Q ss_pred HHHHHHHhcC---CCEEEecCCCCchHHHHHHHHhcCCC----------Cc--eEEEEc-ccCCCHHHHHhHhhccccee
Q psy568 407 SLLYTWLAEH---KPLVLCGPPGSGKTMTLLSALRALPD----------ME--VVSLNF-SSATTPELLLKTFDHYCEYR 470 (1614)
Q Consensus 407 ~ll~~~l~~~---~~vLL~Gp~GtGKT~lv~~~~~~l~~----------~~--~~~i~~-s~~t~~~~l~~~~~~~~~~~ 470 (1614)
..+...+..| +..|++|+.|.||+.++..+++.+.. ++ +..++. ....+.+++....+.
T Consensus 6 ~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir~l~~~----- 80 (299)
T PRK07132 6 KFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFLSAINK----- 80 (299)
T ss_pred HHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHHHHHHH-----
Confidence 3455666554 44569999999999999999887511 12 223321 123444555544332
Q ss_pred ecCCccccccccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCC
Q psy568 471 KTPNGVILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKP 550 (1614)
Q Consensus 471 ~~~~g~~~~p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~ 550 (1614)
....|...|.+=|++||+.+. -+......|...++.- . +++.||-+++.+ ..
T Consensus 81 -----~~~~~~~~~~~KvvII~~~e~------m~~~a~NaLLK~LEEP-----p-------~~t~~il~~~~~-----~k 132 (299)
T PRK07132 81 -----LYFSSFVQSQKKILIIKNIEK------TSNSLLNALLKTIEEP-----P-------KDTYFLLTTKNI-----NK 132 (299)
T ss_pred -----hccCCcccCCceEEEEecccc------cCHHHHHHHHHHhhCC-----C-------CCeEEEEEeCCh-----Hh
Confidence 112333334556667899765 3444445555566641 1 245556555433 26
Q ss_pred CcccccccccEEEecCCChhHHHHHHH
Q psy568 551 LSHRFLRHVPVIYVDYPGETSLKQIYG 577 (1614)
Q Consensus 551 l~~r~~r~f~~i~i~~p~~~~l~~I~~ 577 (1614)
+.+.+.+|+.++.+..|+.+++...+.
T Consensus 133 ll~TI~SRc~~~~f~~l~~~~l~~~l~ 159 (299)
T PRK07132 133 VLPTIVSRCQVFNVKEPDQQKILAKLL 159 (299)
T ss_pred ChHHHHhCeEEEECCCCCHHHHHHHHH
Confidence 777889999999999999999887654
No 472
>PRK02224 chromosome segregation protein; Provisional
Probab=95.27 E-value=20 Score=49.58 Aligned_cols=27 Identities=30% Similarity=0.457 Sum_probs=23.2
Q ss_pred cCCccEEEeecCCCChHHHHHHHHHHc
Q psy568 755 QPQGHLLLIGVSGAGKTTLSRFVAFMN 781 (1614)
Q Consensus 755 ~p~gh~LLvG~~GsGKtsl~rlaA~~~ 781 (1614)
.+.|-.+++|+.|+||||+...+.|.+
T Consensus 21 f~~g~~~i~G~Ng~GKStil~ai~~~l 47 (880)
T PRK02224 21 LEDGVTVIHGVNGSGKSSLLEACFFAL 47 (880)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 356778999999999999999888864
No 473
>PRK09087 hypothetical protein; Validated
Probab=95.26 E-value=0.16 Score=57.24 Aligned_cols=113 Identities=14% Similarity=0.190 Sum_probs=63.1
Q ss_pred cEEEeecCCCChHHHHHHHHHHcCCeEEEEEecCCCChhcHHHHHHHHHHHhccCCCcEEEEEcCCccc---ccchHHHH
Q psy568 759 HLLLIGVSGAGKTTLSRFVAFMNGLSVFQIRAHNKYTGADFDEDLRTVLRRSGCKNEKIAFLLDESNVL---ESGFLERM 835 (1614)
Q Consensus 759 h~LLvG~~GsGKtsl~rlaA~~~~~~~~~i~~~~~~~~~df~~~lk~~l~~ag~~~~~~v~ll~d~~i~---~~~~le~i 835 (1614)
.+.|+|++|||||+|++.+|...+..++. ..+|..++-..+.. -++++||-+.. .+++.+.+
T Consensus 46 ~l~l~G~~GsGKThLl~~~~~~~~~~~i~--------~~~~~~~~~~~~~~-------~~l~iDDi~~~~~~~~~lf~l~ 110 (226)
T PRK09087 46 VVVLAGPVGSGKTHLASIWREKSDALLIH--------PNEIGSDAANAAAE-------GPVLIEDIDAGGFDETGLFHLI 110 (226)
T ss_pred eEEEECCCCCCHHHHHHHHHHhcCCEEec--------HHHcchHHHHhhhc-------CeEEEECCCCCCCCHHHHHHHH
Confidence 49999999999999999988766554332 22333333222211 25677776653 24577888
Q ss_pred HHhhccCCCCCCCChh----hHHHHHHHhHHHHHH---cCCCCCCHHHHHHHHHHHHhh
Q psy568 836 NTLLANGEIPGLFEGD----EYTTLMTQCKEGAQR---EGLMLDSNEELYKWFTQQVMK 887 (1614)
Q Consensus 836 n~lL~~G~v~~Lf~~e----E~~~i~~~~~~~~~~---~~~~~~s~~~l~~~f~~rv~~ 887 (1614)
|.+...| .+-+++.+ ++......++..... -.....+.+....++.+++..
T Consensus 111 n~~~~~g-~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~ 168 (226)
T PRK09087 111 NSVRQAG-TSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFAD 168 (226)
T ss_pred HHHHhCC-CeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHH
Confidence 8887766 33444333 222222223322210 011234666777777766665
No 474
>PRK08939 primosomal protein DnaI; Reviewed
Probab=95.25 E-value=0.02 Score=67.38 Aligned_cols=37 Identities=30% Similarity=0.385 Sum_probs=29.0
Q ss_pred cCCCEEEecCCCCchHHHHHHHHhcCC--CCceEEEEcc
Q psy568 415 EHKPLVLCGPPGSGKTMTLLSALRALP--DMEVVSLNFS 451 (1614)
Q Consensus 415 ~~~~vLL~Gp~GtGKT~lv~~~~~~l~--~~~~~~i~~s 451 (1614)
.+++++|+||+|||||.++..++..+. +..+..++++
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~ 193 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFP 193 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHH
Confidence 467899999999999999998887663 4555666553
No 475
>KOG3595|consensus
Probab=95.22 E-value=9.7 Score=54.60 Aligned_cols=128 Identities=20% Similarity=0.326 Sum_probs=86.7
Q ss_pred HHhccEEEEecCCCCChhhHHHHHHHHHHHhhcCCceEEEeCCCCCCcC-------------------------cccccc
Q psy568 40 SNLNHGLMMVGPSGSGKSTAWKVLLKALERYEGVEGVAHIIDPKAISKE-------------------------ALYGVL 94 (1614)
Q Consensus 40 ~~~r~gVmlvG~~gsGKTt~~~~L~~al~~~~~~~~~~~~inPkais~~-------------------------eLyG~~ 94 (1614)
+.....+++|||+|+|||.....-....... .++.+|-.+.|.. .+.+..
T Consensus 124 ~~~~k~~~~~g~~g~gk~~~~~~~~~~~~~~-----~~~~~~fs~~ts~~~~q~~~~~~~~k~~~~~~~~~~~~~~~~f~ 198 (1395)
T KOG3595|consen 124 LAHGKPVLLVGPTGTGKTVLVLSELRSLQDR-----EVYLLNFSSVTSSELLQEIIESKLDKRRSGNYGPPLGKKLVLFV 198 (1395)
T ss_pred HHhCCeEEEEcCCCCCeeeehHHHHHhcccc-----hheEEeeeeeccHHHHHHHHHHHHHHhcccCCCCCCCceeEEEE
Confidence 3444899999999999998877665554221 1111222222222 223333
Q ss_pred cCCCC----ccccchHHHHHHHHHhhhcCCCCCceEEEEccCCChhhhhhhhhhhcCCCccccCCCceeeCCCCceEEEE
Q psy568 95 DPNTR----EWTDGLFTHILRRIIDNVRGEISKRQWIIFDGDVDPEWVENLNSVLDDNKLLTLPNGERLSLPPNIRIMFE 170 (1614)
Q Consensus 95 d~~t~----eW~DGvls~i~r~~~~~~~~~~~~~~WivfDG~vd~~WiE~lnsvLDdnk~L~L~nGeri~l~~~~~~iFE 170 (1614)
|..+. .|-|=..-.++|++. -+|-.+|++. ..|++=.|..+...... +.|.|..+++.....|+
T Consensus 199 ddinmp~~~~yg~q~~~~~lrq~~---------e~~g~~~~~~-~~~~~i~~i~~~~a~~~--~~~gr~~i~~r~~r~f~ 266 (1395)
T KOG3595|consen 199 DDINMPALDKYGDQPPIELLRQML---------EHGGFYDRKK-SEWVEIENVQLVGAMNP--PGGGRNDITERFLRHFL 266 (1395)
T ss_pred eccCCchhhhcCCccHHHHHHHHH---------Hhceeecccc-cceeEEeeeEEEeecCC--CCCccCcccHHHHHHee
Confidence 32222 233333445666653 2688888888 99999999999877555 99999999999999999
Q ss_pred eccccccCcccccc
Q psy568 171 VQDLKYATLATVSR 184 (1614)
Q Consensus 171 v~dL~~ASPAtVSR 184 (1614)
+-.+...|+++..+
T Consensus 267 ~~~~~~~~~~sl~~ 280 (1395)
T KOG3595|consen 267 IVSLNYPSQESLTQ 280 (1395)
T ss_pred eEeeCCCChhhHHH
Confidence 99999999887765
No 476
>KOG3347|consensus
Probab=95.19 E-value=0.026 Score=56.52 Aligned_cols=163 Identities=15% Similarity=0.146 Sum_probs=0.0
Q ss_pred CEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCCHHHHHhHhhcccceeecCCccccccccCCceEEEEeccCCCC
Q psy568 418 PLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTPELLLKTFDHYCEYRKTPNGVILSPIQLGKWLVLFCDEINLP 497 (1614)
Q Consensus 418 ~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~~~~l~~~~~~~~~~~~~~~g~~~~p~~~gk~~vlfiDdin~p 497 (1614)
++|++|-||||||++...++... .+..+++|....-+++..-++. .-+-.++
T Consensus 9 NILvtGTPG~GKstl~~~lae~~---~~~~i~isd~vkEn~l~~gyDE-----------------~y~c~i~-------- 60 (176)
T KOG3347|consen 9 NILVTGTPGTGKSTLAERLAEKT---GLEYIEISDLVKENNLYEGYDE-----------------EYKCHIL-------- 60 (176)
T ss_pred CEEEeCCCCCCchhHHHHHHHHh---CCceEehhhHHhhhcchhcccc-----------------cccCccc--------
Q ss_pred CccccCcccHHHHHHHHHHcCc-eeeCCCCceEeecCeEEEEeecCCCCCCCCCCcccccccccEEEecCCChhHHHHHH
Q psy568 498 DMDKYATQRVISFLRQLIEQRG-FYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLRHVPVIYVDYPGETSLKQIY 576 (1614)
Q Consensus 498 ~~d~~g~q~~lelLrqlld~~~-~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r~f~~i~i~~p~~~~l~~I~ 576 (1614)
....++.-|-.++..|| +-|-.+..+.+-.-|.+|..-..|.. .|=.||.+|- +.-.......-..||
T Consensus 61 -----DEdkv~D~Le~~m~~Gg~IVDyHgCd~FperwfdlVvVLr~~~s----~LY~RL~sRg--Y~e~Ki~eNiecEIf 129 (176)
T KOG3347|consen 61 -----DEDKVLDELEPLMIEGGNIVDYHGCDFFPERWFDLVVVLRTPNS----VLYDRLKSRG--YSEKKIKENIECEIF 129 (176)
T ss_pred -----cHHHHHHHHHHHHhcCCcEEeecccCccchhheeEEEEEecCch----HHHHHHHHcC--CCHHHHhhhcchHHH
Q ss_pred HHHHHhhhhcchh--hhhhHHHHHHHHHHHHHHHHhhcCCCCCCc
Q psy568 577 GTFSRAMLRLIPP--LRGYADALTNAMVELYLASQEKFTQDMQPH 619 (1614)
Q Consensus 577 ~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~h 619 (1614)
+.+.......+.. +..+.......+.....++..-...-.++|
T Consensus 130 gv~~eea~eSy~~~iV~eL~s~~~Eem~~ni~ri~~w~~~w~~~h 174 (176)
T KOG3347|consen 130 GVVLEEARESYSPKIVVELQSETKEEMESNISRILNWTRMWKKPH 174 (176)
T ss_pred HHHHHHHHHHcCCcceeecCcCCHHHHHHHHHHHHHHHHHHhhcc
No 477
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=95.11 E-value=16 Score=48.00 Aligned_cols=62 Identities=15% Similarity=0.180 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q psy568 1241 LRLELKSLEVQASENKAKGEETKDLITQLEKSIASYKDEYAQLIAQATAIKTDLDNVQAKFY 1302 (1614)
Q Consensus 1241 ~~~~l~~~~~~~~~~~~~l~~~~~~l~~~e~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~~~ 1302 (1614)
.+.+.+++|.++...+.++...++.+..+|+++.+++....+...+.+.|-..|..+|.|=.
T Consensus 543 ~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~ 604 (697)
T PF09726_consen 543 CRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQ 604 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 34455666667777777777777777777777766665323334455566555655555433
No 478
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.10 E-value=0.012 Score=65.07 Aligned_cols=24 Identities=33% Similarity=0.530 Sum_probs=21.4
Q ss_pred EEEEecCCCCChhhHHHHHHHHHH
Q psy568 45 GLMMVGPSGSGKSTAWKVLLKALE 68 (1614)
Q Consensus 45 gVmlvG~~gsGKTt~~~~L~~al~ 68 (1614)
-|.|+|||||||||+.+++++-..
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~~ 54 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLEK 54 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 489999999999999999998754
No 479
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=95.10 E-value=0.57 Score=53.97 Aligned_cols=46 Identities=20% Similarity=0.395 Sum_probs=38.6
Q ss_pred chhhHHHHHHHHHHHHHHhccCCc----cEEEeecCCCChHHHHHHHHHH
Q psy568 735 QLVLFDEVLDHVLRIDRIFRQPQG----HLLLIGVSGAGKTTLSRFVAFM 780 (1614)
Q Consensus 735 ~lvlf~~~i~hi~ri~Ril~~p~g----h~LLvG~~GsGKtsl~rlaA~~ 780 (1614)
..+-|+.|-+-+.++...+..|+. ++||||++|.|||++++-.+..
T Consensus 35 rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~ 84 (302)
T PF05621_consen 35 RWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRL 84 (302)
T ss_pred CeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHH
Confidence 567788888888899888887754 4999999999999999877764
No 480
>COG3911 Predicted ATPase [General function prediction only]
Probab=95.09 E-value=0.022 Score=56.81 Aligned_cols=82 Identities=24% Similarity=0.366 Sum_probs=49.1
Q ss_pred EEEEecCCCCChhhHHHHHHHHHHHhhcCCceEEEeCCCCCCcCcccccccCCCCcccc-chHHHHHHHHHhhhcCCCCC
Q psy568 45 GLMMVGPSGSGKSTAWKVLLKALERYEGVEGVAHIIDPKAISKEALYGVLDPNTREWTD-GLFTHILRRIIDNVRGEISK 123 (1614)
Q Consensus 45 gVmlvG~~gsGKTt~~~~L~~al~~~~~~~~~~~~inPkais~~eLyG~~d~~t~eW~D-Gvls~i~r~~~~~~~~~~~~ 123 (1614)
-++|.|-||+||||++..|+++ |.-+ +...--.-|-.+..-|..+ .-|+| |.|..++-.+..........
T Consensus 11 ~fIltGgpGaGKTtLL~aLa~~-----Gfat-vee~~r~ii~~es~~gg~~---lPW~D~~afael~~~~~l~q~r~~~~ 81 (183)
T COG3911 11 RFILTGGPGAGKTTLLAALARA-----GFAT-VEEAGRDIIALESAQGGTA---LPWTDPGAFAELVGLQRLRQTRSAAV 81 (183)
T ss_pred EEEEeCCCCCcHHHHHHHHHHc-----Ccee-eccchhhHHHHHHhcCCCc---CCccChHHHHHHHHHHHHHHhhcccc
Confidence 6788999999999999999887 2211 1011111133444555544 35999 77777664432211111233
Q ss_pred ceEEEEc-cCCCh
Q psy568 124 RQWIIFD-GDVDP 135 (1614)
Q Consensus 124 ~~WivfD-G~vd~ 135 (1614)
..-+.|| |++|+
T Consensus 82 ~~~vFfDR~~~da 94 (183)
T COG3911 82 GGRVFFDRGPPDA 94 (183)
T ss_pred cCceeeccCcHHH
Confidence 4678899 88886
No 481
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=95.07 E-value=0.15 Score=60.52 Aligned_cols=123 Identities=15% Similarity=0.196 Sum_probs=78.5
Q ss_pred EEEeecCCCChHHHHHHHHHHcC-------------------------CeEEEEEecC----------CCChhcHHHHHH
Q psy568 760 LLLIGVSGAGKTTLSRFVAFMNG-------------------------LSVFQIRAHN----------KYTGADFDEDLR 804 (1614)
Q Consensus 760 ~LLvG~~GsGKtsl~rlaA~~~~-------------------------~~~~~i~~~~----------~~~~~df~~~lk 804 (1614)
+||.||.|+||+++++.+|.... -+++.+.... ..++.+.++ +.
T Consensus 24 ~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~iR~-l~ 102 (325)
T PRK08699 24 WLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAVRE-II 102 (325)
T ss_pred EEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHHHH-HH
Confidence 77999999999999998886532 2345554421 244555554 33
Q ss_pred HHHHHhccCCCcEEEEEcCCcccccchHHHHHHhhccC--CCCCCCChhhHHHHHHHhHHHHHHcCCCCCCHHHHHHHHH
Q psy568 805 TVLRRSGCKNEKIAFLLDESNVLESGFLERMNTLLANG--EIPGLFEGDEYTTLMTQCKEGAQREGLMLDSNEELYKWFT 882 (1614)
Q Consensus 805 ~~l~~ag~~~~~~v~ll~d~~i~~~~~le~in~lL~~G--~v~~Lf~~eE~~~i~~~~~~~~~~~~~~~~s~~~l~~~f~ 882 (1614)
..+......+..-|+++++.+-.++..-..+-..|... .+.-++...+.+.+...++..++.-.....+.+.+.+|..
T Consensus 103 ~~~~~~p~~~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~ 182 (325)
T PRK08699 103 DNVYLTSVRGGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLR 182 (325)
T ss_pred HHHhhCcccCCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHH
Confidence 33333444555667777888777776655555555443 3445666777777777777777766655567777777765
Q ss_pred H
Q psy568 883 Q 883 (1614)
Q Consensus 883 ~ 883 (1614)
+
T Consensus 183 ~ 183 (325)
T PRK08699 183 E 183 (325)
T ss_pred h
Confidence 4
No 482
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=95.02 E-value=0.031 Score=70.05 Aligned_cols=116 Identities=18% Similarity=0.225 Sum_probs=73.5
Q ss_pred HhccEEEEecCCCCChhhHHHHHHHHHHHhhcCCc----eE-----------------EEeCCCCCCcCcccccccCCCC
Q psy568 41 NLNHGLMMVGPSGSGKSTAWKVLLKALERYEGVEG----VA-----------------HIIDPKAISKEALYGVLDPNTR 99 (1614)
Q Consensus 41 ~~r~gVmlvG~~gsGKTt~~~~L~~al~~~~~~~~----~~-----------------~~inPkais~~eLyG~~d~~t~ 99 (1614)
.-.|.++++||+|||||++.+.+...+..+.+... .+ ++-.+-+.+...++|.- .
T Consensus 209 ~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg----~ 284 (499)
T TIGR00368 209 AGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVGKLIDRKQIKQRPFRSPHHSASKPALVGGG----P 284 (499)
T ss_pred cCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchhhhccccccccCCccccccccchhhhhCCc----c
Confidence 34578999999999999999999876543321100 00 01111233444555521 1
Q ss_pred ccccchHHHHHHHHHhhhcCCCCCceEEEEcc--CCChhhhhhhhhhhcCCCccccCCCceeeCCCCceEEEEecc
Q psy568 100 EWTDGLFTHILRRIIDNVRGEISKRQWIIFDG--DVDPEWVENLNSVLDDNKLLTLPNGERLSLPPNIRIMFEVQD 173 (1614)
Q Consensus 100 eW~DGvls~i~r~~~~~~~~~~~~~~WivfDG--~vd~~WiE~lnsvLDdnk~L~L~nGeri~l~~~~~~iFEv~d 173 (1614)
..+.|.++.+ ..-.+++|. ..++.-.+.|...|++..+-.-..|-.+.+|.++++|.-++.
T Consensus 285 ~~~pG~i~lA-------------~~GvLfLDEi~e~~~~~~~~L~~~LE~~~v~i~r~g~~~~~pa~frlIaa~Np 347 (499)
T TIGR00368 285 IPLPGEISLA-------------HNGVLFLDELPEFKRSVLDALREPIEDGSISISRASAKIFYPARFQLVAAMNP 347 (499)
T ss_pred ccchhhhhcc-------------CCCeEecCChhhCCHHHHHHHHHHHHcCcEEEEecCcceeccCCeEEEEecCC
Confidence 2344543211 125678885 567888999999999876544556667889999999987764
No 483
>KOG0989|consensus
Probab=95.02 E-value=3.8 Score=46.85 Aligned_cols=28 Identities=29% Similarity=0.258 Sum_probs=23.8
Q ss_pred CCccEEEeecCCCChHHHHHHHHHHcCC
Q psy568 756 PQGHLLLIGVSGAGKTTLSRFVAFMNGL 783 (1614)
Q Consensus 756 p~gh~LLvG~~GsGKtsl~rlaA~~~~~ 783 (1614)
-.-|+|+.||+|+||||.++.+|....+
T Consensus 56 ~lp~~LFyGPpGTGKTStalafar~L~~ 83 (346)
T KOG0989|consen 56 ILPHYLFYGPPGTGKTSTALAFARALNC 83 (346)
T ss_pred CCceEEeeCCCCCcHhHHHHHHHHHhcC
Confidence 4458999999999999999988876555
No 484
>PRK08181 transposase; Validated
Probab=95.01 E-value=0.061 Score=61.91 Aligned_cols=91 Identities=19% Similarity=0.182 Sum_probs=62.3
Q ss_pred HHHHhccEEEEecCCCCChhhHHHHHHHHHHHhhcCCceEEEeCCCCCCcCcccccccCCCCccccchHHHHHHHHHhhh
Q psy568 38 QISNLNHGLMMVGPSGSGKSTAWKVLLKALERYEGVEGVAHIIDPKAISKEALYGVLDPNTREWTDGLFTHILRRIIDNV 117 (1614)
Q Consensus 38 e~~~~r~gVmlvG~~gsGKTt~~~~L~~al~~~~~~~~~~~~inPkais~~eLyG~~d~~t~eW~DGvls~i~r~~~~~~ 117 (1614)
+-+..+.+|+++||||+|||.+...++..+..- |..+ .+ ++..+|...+.. .+.+|-+...++...
T Consensus 101 ~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~-g~~v-~f------~~~~~L~~~l~~---a~~~~~~~~~l~~l~--- 166 (269)
T PRK08181 101 SWLAKGANLLLFGPPGGGKSHLAAAIGLALIEN-GWRV-LF------TRTTDLVQKLQV---ARRELQLESAIAKLD--- 166 (269)
T ss_pred HHHhcCceEEEEecCCCcHHHHHHHHHHHHHHc-CCce-ee------eeHHHHHHHHHH---HHhCCcHHHHHHHHh---
Confidence 345677899999999999999999998876442 3332 22 345667666532 245666666666652
Q ss_pred cCCCCCceEEEEc--c--CCChhhhhhhhhhhcC
Q psy568 118 RGEISKRQWIIFD--G--DVDPEWVENLNSVLDD 147 (1614)
Q Consensus 118 ~~~~~~~~WivfD--G--~vd~~WiE~lnsvLDd 147 (1614)
....+|+| | +.+..|.+.|-.+++.
T Consensus 167 -----~~dLLIIDDlg~~~~~~~~~~~Lf~lin~ 195 (269)
T PRK08181 167 -----KFDLLILDDLAYVTKDQAETSVLFELISA 195 (269)
T ss_pred -----cCCEEEEeccccccCCHHHHHHHHHHHHH
Confidence 23689999 4 4577788888888763
No 485
>PF05729 NACHT: NACHT domain
Probab=94.98 E-value=0.045 Score=58.37 Aligned_cols=46 Identities=28% Similarity=0.312 Sum_probs=31.7
Q ss_pred cEEEEecCCCCChhhHHHHHHHHHHHhhcCC---ceEEEeCCCCCCcCc
Q psy568 44 HGLMMVGPSGSGKSTAWKVLLKALERYEGVE---GVAHIIDPKAISKEA 89 (1614)
Q Consensus 44 ~gVmlvG~~gsGKTt~~~~L~~al~~~~~~~---~~~~~inPkais~~e 89 (1614)
+-++|+|++|+||||+.+.++..+....... .....++.+..+...
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSN 49 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhcc
Confidence 3589999999999999999998886543222 233445555554443
No 486
>PRK06835 DNA replication protein DnaC; Validated
Probab=94.97 E-value=0.2 Score=59.49 Aligned_cols=46 Identities=37% Similarity=0.424 Sum_probs=33.1
Q ss_pred ccCCccEEEeecCCCChHHHHHHHHHH---cCCeEEEEEecCCCChhcHHHHHHH
Q psy568 754 RQPQGHLLLIGVSGAGKTTLSRFVAFM---NGLSVFQIRAHNKYTGADFDEDLRT 805 (1614)
Q Consensus 754 ~~p~gh~LLvG~~GsGKtsl~rlaA~~---~~~~~~~i~~~~~~~~~df~~~lk~ 805 (1614)
...+.+++|.|++|+|||.|+..+|.. .|+.+..++. .++.+.++.
T Consensus 180 ~~~~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~------~~l~~~l~~ 228 (329)
T PRK06835 180 DKNNENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTA------DELIEILRE 228 (329)
T ss_pred hccCCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEH------HHHHHHHHH
Confidence 344577999999999999999988865 3677776653 445554444
No 487
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=94.97 E-value=0.11 Score=58.63 Aligned_cols=125 Identities=19% Similarity=0.172 Sum_probs=85.0
Q ss_pred HHhccEEEEecCCCCChhhHHHHHHHHHHHhh----------------cCCceEEEeCCCCCCcCcccccccCCCCcccc
Q psy568 40 SNLNHGLMMVGPSGSGKSTAWKVLLKALERYE----------------GVEGVAHIIDPKAISKEALYGVLDPNTREWTD 103 (1614)
Q Consensus 40 ~~~r~gVmlvG~~gsGKTt~~~~L~~al~~~~----------------~~~~~~~~inPkais~~eLyG~~d~~t~eW~D 103 (1614)
.+..|+.+++||.|+||..+...+++++.=.. +.-...+.+.|..-
T Consensus 4 ~~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~------------------ 65 (261)
T PRK05818 4 KNKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKN------------------ 65 (261)
T ss_pred CCCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcc------------------
Confidence 45689999999999999999999998873110 11112445555431
Q ss_pred chHHHHHHHHHhhhcC---CCCCceEEEEccCCChhhhhhhhhhhcCCCccccCCCceeeCCCCceEEEEeccccccCcc
Q psy568 104 GLFTHILRRIIDNVRG---EISKRQWIIFDGDVDPEWVENLNSVLDDNKLLTLPNGERLSLPPNIRIMFEVQDLKYATLA 180 (1614)
Q Consensus 104 Gvls~i~r~~~~~~~~---~~~~~~WivfDG~vd~~WiE~lnsvLDdnk~L~L~nGeri~l~~~~~~iFEv~dL~~ASPA 180 (1614)
.+-..-+|+....... +...++.+|+|+ +|..=.+.-|++| |+|- .-|+++.||+-+++....=|.
T Consensus 66 ~I~id~ir~l~~~l~~~s~e~~~~KV~II~~-ae~m~~~AaNaLL---K~LE-------EPp~~t~fiLit~~~~~lLpT 134 (261)
T PRK05818 66 PIKKEDALSIINKLNRPSVESNGKKIYIIYG-IEKLNKQSANSLL---KLIE-------EPPKNTYGIFTTRNENNILNT 134 (261)
T ss_pred cCCHHHHHHHHHHHccCchhcCCCEEEEecc-HhhhCHHHHHHHH---Hhhc-------CCCCCeEEEEEECChHhCchH
Confidence 1333445554432221 123578888887 5666677888888 4443 247788899999999999999
Q ss_pred ccccceeEEecCc
Q psy568 181 TVSRCGMIWFSED 193 (1614)
Q Consensus 181 tVSRcgmv~~~~~ 193 (1614)
.+|||-.+.+.+.
T Consensus 135 I~SRCq~~~~~~~ 147 (261)
T PRK05818 135 ILSRCVQYVVLSK 147 (261)
T ss_pred hhhheeeeecCCh
Confidence 9999999988654
No 488
>PRK06620 hypothetical protein; Validated
Probab=94.94 E-value=0.22 Score=55.57 Aligned_cols=26 Identities=31% Similarity=0.364 Sum_probs=22.9
Q ss_pred ccEEEeecCCCChHHHHHHHHHHcCC
Q psy568 758 GHLLLIGVSGAGKTTLSRFVAFMNGL 783 (1614)
Q Consensus 758 gh~LLvG~~GsGKtsl~rlaA~~~~~ 783 (1614)
.+++|.||+|||||+|++.+|...+.
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~ 70 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNA 70 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCC
Confidence 45999999999999999998887765
No 489
>KOG0652|consensus
Probab=94.92 E-value=0.028 Score=60.92 Aligned_cols=78 Identities=22% Similarity=0.382 Sum_probs=48.1
Q ss_pred HHHHHHHHH-hccCCccEEEeecCCCChHHHHHHHHHHcCCeEEEEEecCCCChhcHHHHHHHHHHHh---ccCCCcEEE
Q psy568 744 DHVLRIDRI-FRQPQGHLLLIGVSGAGKTTLSRFVAFMNGLSVFQIRAHNKYTGADFDEDLRTVLRRS---GCKNEKIAF 819 (1614)
Q Consensus 744 ~hi~ri~Ri-l~~p~gh~LLvG~~GsGKtsl~rlaA~~~~~~~~~i~~~~~~~~~df~~~lk~~l~~a---g~~~~~~v~ 819 (1614)
.|-.|.... ++-|.| +|+.||||+|||-++|..|...+.++..+.-.+ -+.=|.+|=.++.+.| .....|+.+
T Consensus 192 th~ekF~~lgi~pPKG-vLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQ--LVQMfIGdGAkLVRDAFaLAKEkaP~II 268 (424)
T KOG0652|consen 192 THKEKFENLGIRPPKG-VLMYGPPGTGKTLMARACAAQTNATFLKLAGPQ--LVQMFIGDGAKLVRDAFALAKEKAPTII 268 (424)
T ss_pred ccHHHHHhcCCCCCCc-eEeeCCCCCcHHHHHHHHHHhccchHHHhcchH--HHhhhhcchHHHHHHHHHHhhccCCeEE
Confidence 344455444 566777 999999999999999999887776655432111 0122444434444443 234567777
Q ss_pred EEcCC
Q psy568 820 LLDES 824 (1614)
Q Consensus 820 ll~d~ 824 (1614)
++|+-
T Consensus 269 FIDEl 273 (424)
T KOG0652|consen 269 FIDEL 273 (424)
T ss_pred EEech
Confidence 77754
No 490
>PRK12608 transcription termination factor Rho; Provisional
Probab=94.91 E-value=0.032 Score=66.08 Aligned_cols=89 Identities=15% Similarity=0.187 Sum_probs=50.0
Q ss_pred HHHHHH--hcCCCEEEecCCCCchHHHHHHHHhcCCC----CceEEEEc-ccCCCHHHHHhHhhcccceeec--CCcccc
Q psy568 408 LLYTWL--AEHKPLVLCGPPGSGKTMTLLSALRALPD----MEVVSLNF-SSATTPELLLKTFDHYCEYRKT--PNGVIL 478 (1614)
Q Consensus 408 ll~~~l--~~~~~vLL~Gp~GtGKT~lv~~~~~~l~~----~~~~~i~~-s~~t~~~~l~~~~~~~~~~~~~--~~g~~~ 478 (1614)
.++.++ ..|+.++|+||+|||||++++.+++.+.. ..++.+-+ ....+..++...+...+.-... ......
T Consensus 123 vID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~~~~~ 202 (380)
T PRK12608 123 VVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPPDEHI 202 (380)
T ss_pred hhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCHHHHH
Confidence 444444 46789999999999999999998876532 12233222 2334445555554321111000 000000
Q ss_pred c-----------cccCCceEEEEeccCCC
Q psy568 479 S-----------PIQLGKWLVLFCDEINL 496 (1614)
Q Consensus 479 ~-----------p~~~gk~~vlfiDdin~ 496 (1614)
. -...|+..|+++||+..
T Consensus 203 ~v~~~~~~~Ae~f~~~GkdVVLvlDsltr 231 (380)
T PRK12608 203 RVAELVLERAKRLVEQGKDVVILLDSLTR 231 (380)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEEeCcHH
Confidence 0 11357889999999983
No 491
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=94.91 E-value=1.4 Score=45.39 Aligned_cols=90 Identities=20% Similarity=0.229 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy568 1244 ELKSLEVQASENKAKGEETKDLITQLEKSIASYKDEYAQLIAQATAIKTDLDNVQAKFYEYAQLIAQATAIKTDLDNVQA 1323 (1614)
Q Consensus 1244 ~l~~~~~~~~~~~~~l~~~~~~l~~~e~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 1323 (1614)
+...+......+++++..++....+.+..|..|+...+.+..+.+.++.++.....++.+-++.....+++.+.++.++.
T Consensus 8 E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEe 87 (143)
T PF12718_consen 8 EADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEE 87 (143)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHH
Confidence 33344444444444444444444555555555555555555555555555555555555555554555566666666666
Q ss_pred HHHHHHHHHH
Q psy568 1324 KVERSMALLK 1333 (1614)
Q Consensus 1324 rl~~a~~l~~ 1333 (1614)
.|+++.+-+.
T Consensus 88 ele~ae~~L~ 97 (143)
T PF12718_consen 88 ELEEAEKKLK 97 (143)
T ss_pred HHHHHHHHHH
Confidence 6666655443
No 492
>KOG0991|consensus
Probab=94.90 E-value=0.36 Score=52.18 Aligned_cols=90 Identities=19% Similarity=0.252 Sum_probs=63.9
Q ss_pred chhhHHHHHHHHHHHHHHhccCCccEEEeecCCCChHHHHHHHHHH-cCC----eEEEEEecCCCChhcHHHHHHHHHHH
Q psy568 735 QLVLFDEVLDHVLRIDRIFRQPQGHLLLIGVSGAGKTTLSRFVAFM-NGL----SVFQIRAHNKYTGADFDEDLRTVLRR 809 (1614)
Q Consensus 735 ~lvlf~~~i~hi~ri~Ril~~p~gh~LLvG~~GsGKtsl~rlaA~~-~~~----~~~~i~~~~~~~~~df~~~lk~~l~~ 809 (1614)
++|--.++++.+.-+.+-=.+| |+++.||||+||||.+..+|+. +|- -+.+++.+..-++.--+.-+|..-++
T Consensus 28 dIVGNe~tv~rl~via~~gnmP--~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRGIDvVRn~IK~FAQ~ 105 (333)
T KOG0991|consen 28 DIVGNEDTVERLSVIAKEGNMP--NLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERGIDVVRNKIKMFAQK 105 (333)
T ss_pred HhhCCHHHHHHHHHHHHcCCCC--ceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccccccHHHHHHHHHHHHh
Confidence 4555567777666666654455 7999999999999998887764 562 25567777777777778888887666
Q ss_pred hccC--CCcEEEEEcCCcc
Q psy568 810 SGCK--NEKIAFLLDESNV 826 (1614)
Q Consensus 810 ag~~--~~~~v~ll~d~~i 826 (1614)
-... |+.-++++|+.+-
T Consensus 106 kv~lp~grhKIiILDEADS 124 (333)
T KOG0991|consen 106 KVTLPPGRHKIIILDEADS 124 (333)
T ss_pred hccCCCCceeEEEeeccch
Confidence 5554 5666777777543
No 493
>KOG0977|consensus
Probab=94.90 E-value=15 Score=46.05 Aligned_cols=23 Identities=9% Similarity=0.242 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHH
Q psy568 1040 VEQVEEMQKSLAVKSQELQSKNE 1062 (1614)
Q Consensus 1040 ~~~v~~l~~~L~~~~~~l~~~~~ 1062 (1614)
..++..++.++..+++.++++.+
T Consensus 112 e~ei~kl~~e~~elr~~~~~~~k 134 (546)
T KOG0977|consen 112 EIEITKLREELKELRKKLEKAEK 134 (546)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHH
Confidence 33444455555555555544433
No 494
>KOG0741|consensus
Probab=94.88 E-value=0.031 Score=66.79 Aligned_cols=85 Identities=24% Similarity=0.364 Sum_probs=55.7
Q ss_pred HHHHHHHhcc--EEEEecCCCCChhhHHHHHHHHHHHhhcCCceEEEeCCCCCCcCcccccccCCCCccccchHHHHHHH
Q psy568 35 QLYQISNLNH--GLMMVGPSGSGKSTAWKVLLKALERYEGVEGVAHIIDPKAISKEALYGVLDPNTREWTDGLFTHILRR 112 (1614)
Q Consensus 35 qL~e~~~~r~--gVmlvG~~gsGKTt~~~~L~~al~~~~~~~~~~~~inPkais~~eLyG~~d~~t~eW~DGvls~i~r~ 112 (1614)
.+.|.+...| |++|.||||+|||-+.+-+-+-|+.- .||-+.-.|.+-.|-..|.+=.--+|.-+=++
T Consensus 246 ~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNAr----------ePKIVNGPeIL~KYVGeSE~NvR~LFaDAEeE 315 (744)
T KOG0741|consen 246 EVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAR----------EPKIVNGPEILNKYVGESEENVRKLFADAEEE 315 (744)
T ss_pred HHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCC----------CCcccCcHHHHHHhhcccHHHHHHHHHhHHHH
Confidence 3456667776 99999999999999988887776542 36777777777666554433222333333332
Q ss_pred HHhhhcCCCCCceEEEEcc
Q psy568 113 IIDNVRGEISKRQWIIFDG 131 (1614)
Q Consensus 113 ~~~~~~~~~~~~~WivfDG 131 (1614)
.- ..++.+.-|.||||-
T Consensus 316 ~r--~~g~~SgLHIIIFDE 332 (744)
T KOG0741|consen 316 QR--RLGANSGLHIIIFDE 332 (744)
T ss_pred HH--hhCccCCceEEEehh
Confidence 21 124556789999993
No 495
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=94.87 E-value=0.036 Score=69.38 Aligned_cols=63 Identities=38% Similarity=0.672 Sum_probs=48.6
Q ss_pred ccCCccEEEeecCCCChHHHHHHHHHHcCCeEEEEEecCCCChhcHHH--------HHHHHHHHhccCCCcEEEEEcCC
Q psy568 754 RQPQGHLLLIGVSGAGKTTLSRFVAFMNGLSVFQIRAHNKYTGADFDE--------DLRTVLRRSGCKNEKIAFLLDES 824 (1614)
Q Consensus 754 ~~p~gh~LLvG~~GsGKtsl~rlaA~~~~~~~~~i~~~~~~~~~df~~--------~lk~~l~~ag~~~~~~v~ll~d~ 824 (1614)
+.|.| +||+||||+|||.|+|..|--++.++|.+ +.++|.+ -.|.++.+|. ++-|+.+++|+.
T Consensus 181 kiPkG-vlLvGpPGTGKTLLAkAvAgEA~VPFf~i------SGS~FVemfVGvGAsRVRdLF~qAk-k~aP~IIFIDEi 251 (596)
T COG0465 181 KIPKG-VLLVGPPGTGKTLLAKAVAGEAGVPFFSI------SGSDFVEMFVGVGASRVRDLFEQAK-KNAPCIIFIDEI 251 (596)
T ss_pred ccccc-eeEecCCCCCcHHHHHHHhcccCCCceec------cchhhhhhhcCCCcHHHHHHHHHhh-ccCCCeEEEehh
Confidence 57998 99999999999999999999999999988 4456655 2355666664 455666666653
No 496
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.87 E-value=0.035 Score=58.74 Aligned_cols=25 Identities=40% Similarity=0.523 Sum_probs=23.1
Q ss_pred EEEecCCCCChhhHHHHHHHHHHHh
Q psy568 46 LMMVGPSGSGKSTAWKVLLKALERY 70 (1614)
Q Consensus 46 VmlvG~~gsGKTt~~~~L~~al~~~ 70 (1614)
|++.|+|||||||.-+-|+++|.+-
T Consensus 4 iIlTGyPgsGKTtfakeLak~L~~~ 28 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKELRQE 28 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHh
Confidence 7899999999999999999999763
No 497
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.85 E-value=0.017 Score=61.99 Aligned_cols=25 Identities=40% Similarity=0.610 Sum_probs=20.4
Q ss_pred HhccEEEEecCCCCChhhHHHHHHH
Q psy568 41 NLNHGLMMVGPSGSGKSTAWKVLLK 65 (1614)
Q Consensus 41 ~~r~gVmlvG~~gsGKTt~~~~L~~ 65 (1614)
.-..-|.|+||+||||||++|++..
T Consensus 26 ~~Gevv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 26 EKGEVVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHC
Confidence 3456799999999999999987643
No 498
>KOG0651|consensus
Probab=94.84 E-value=0.054 Score=60.91 Aligned_cols=70 Identities=27% Similarity=0.404 Sum_probs=48.7
Q ss_pred hccCCccEEEeecCCCChHHHHHHHHHHcCCeEEEEEecCCCC--hhcHHHHHHHHHHHhccCCCcEEEEEcCC
Q psy568 753 FRQPQGHLLLIGVSGAGKTTLSRFVAFMNGLSVFQIRAHNKYT--GADFDEDLRTVLRRSGCKNEKIAFLLDES 824 (1614)
Q Consensus 753 l~~p~gh~LLvG~~GsGKtsl~rlaA~~~~~~~~~i~~~~~~~--~~df~~~lk~~l~~ag~~~~~~v~ll~d~ 824 (1614)
+.-|.| ++|+||+|+|||-+++++|...|.++..+..+.--+ ..|--.-++..++.| .+..|++++++|-
T Consensus 163 Ik~Pkg-~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyiGEsaRlIRemf~yA-~~~~pciifmdei 234 (388)
T KOG0651|consen 163 IKPPKG-LLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYIGESARLIRDMFRYA-REVIPCIIFMDEI 234 (388)
T ss_pred CCCCce-eEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhcccHHHHHHHHHHHH-hhhCceEEeehhh
Confidence 346777 999999999999999999999999988775432211 112222344445444 4667888888764
No 499
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=94.82 E-value=0.025 Score=48.63 Aligned_cols=24 Identities=38% Similarity=0.563 Sum_probs=21.6
Q ss_pred EEEEecCCCCChhhHHHHHHHHHH
Q psy568 45 GLMMVGPSGSGKSTAWKVLLKALE 68 (1614)
Q Consensus 45 gVmlvG~~gsGKTt~~~~L~~al~ 68 (1614)
..+|.||+||||||++..++-+|.
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~L~ 48 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTVLY 48 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHc
Confidence 499999999999999999988863
No 500
>KOG1970|consensus
Probab=94.81 E-value=0.24 Score=60.13 Aligned_cols=115 Identities=24% Similarity=0.300 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhccCCcc--EEEeecCCCChHHHHHHHHHHcCCeEEEEE-----------------ecCCCC--hhcH
Q psy568 741 EVLDHVLRIDRIFRQPQGH--LLLIGVSGAGKTTLSRFVAFMNGLSVFQIR-----------------AHNKYT--GADF 799 (1614)
Q Consensus 741 ~~i~hi~ri~Ril~~p~gh--~LLvG~~GsGKtsl~rlaA~~~~~~~~~i~-----------------~~~~~~--~~df 799 (1614)
..+++-.+-.-.+...-|| +||.||+||||+|.++++|...|+.+.+-. ....|. +..|
T Consensus 92 ~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~Npi~~~~~~~~h~~t~~~~~~~~s~L~~f 171 (634)
T KOG1970|consen 92 SEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKELGYQLIEWSNPINLKEPENLHNETSFLMFPYQSQLAVF 171 (634)
T ss_pred HHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhhCceeeeecCCccccccccccccchhcccchhhHHHHH
Q ss_pred HHHHHHH-----HHHhccCCC--cEEEEEcCCcccccchHHHHHHhhccCCCCCCCChhhHHHHHHHhHHHHHHcCCCCC
Q psy568 800 DEDLRTV-----LRRSGCKNE--KIAFLLDESNVLESGFLERMNTLLANGEIPGLFEGDEYTTLMTQCKEGAQREGLMLD 872 (1614)
Q Consensus 800 ~~~lk~~-----l~~ag~~~~--~~v~ll~d~~i~~~~~le~in~lL~~G~v~~Lf~~eE~~~i~~~~~~~~~~~~~~~~ 872 (1614)
...+-.. ++..|.+.. +.++|++| +|+.|-.+..+.+-+.++ ..-+.|
T Consensus 172 esFler~~kyg~l~~~g~~~~~~~~liLveD--------------------LPn~~~~d~~~~f~evL~-~y~s~g---- 226 (634)
T KOG1970|consen 172 ESFLLRATKYGSLQMSGDDLRTDKKLILVED--------------------LPNQFYRDDSETFREVLR-LYVSIG---- 226 (634)
T ss_pred HHHHHHHHhhchhhhcccccccCceEEEeec--------------------cchhhhhhhHHHHHHHHH-HHHhcC----
Q ss_pred CHHHHHHHHHHHHhhcceEEEEE
Q psy568 873 SNEELYKWFTQQVMKNLHVVFTM 895 (1614)
Q Consensus 873 s~~~l~~~f~~rv~~nlhivl~~ 895 (1614)
-+-+|+|+
T Consensus 227 ---------------~~PlIf~i 234 (634)
T KOG1970|consen 227 ---------------RCPLIFII 234 (634)
T ss_pred ---------------CCcEEEEE
Done!