Query psy568
Match_columns 1614
No_of_seqs 351 out of 3108
Neff 8.7
Searched_HMMs 29240
Date Fri Aug 16 23:54:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy568.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/568hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vkg_A Dynein heavy chain, cyt 100.0 4E-285 1E-289 2953.9 141.8 1460 2-1614 871-2361(3245)
2 4akg_A Glutathione S-transfera 100.0 3E-242 9E-247 2525.3 128.5 1289 2-1614 888-2181(2695)
3 2rr7_A Dynein heavy chain 9; m 100.0 9.8E-34 3.4E-38 292.4 5.2 140 1105-1246 1-153 (155)
4 3err_A Fusion protein of micro 100.0 2.9E-31 9.9E-36 326.1 19.8 174 1087-1261 32-205 (536)
5 4akg_A Glutathione S-transfera 100.0 1E-26 3.5E-31 330.6 34.4 425 389-923 618-1073(2695)
6 3vkg_A Dynein heavy chain, cyt 100.0 3.7E-27 1.3E-31 334.9 29.3 433 388-923 576-1055(3245)
7 1r6b_X CLPA protein; AAA+, N-t 99.7 2.5E-17 8.6E-22 219.0 21.5 410 415-939 206-668 (758)
8 1qvr_A CLPB protein; coiled co 99.7 2.3E-17 7.8E-22 221.0 16.9 458 415-939 190-772 (854)
9 3pxi_A Negative regulator of g 99.7 2.8E-17 9.5E-22 218.0 15.9 426 414-940 199-678 (758)
10 3pxi_A Negative regulator of g 99.6 2.5E-14 8.7E-19 189.6 24.6 187 418-636 523-722 (758)
11 1r6b_X CLPA protein; AAA+, N-t 99.6 5.7E-13 2E-17 177.1 35.6 158 418-583 490-669 (758)
12 3cf2_A TER ATPase, transitiona 99.6 5E-15 1.7E-19 190.7 11.5 136 416-582 238-387 (806)
13 1qvr_A CLPB protein; coiled co 99.4 1.3E-11 4.4E-16 165.3 28.0 199 417-636 589-817 (854)
14 3cf2_A TER ATPase, transitiona 99.3 7.9E-12 2.7E-16 161.1 14.4 143 414-581 509-662 (806)
15 2r44_A Uncharacterized protein 99.3 3.3E-11 1.1E-15 143.7 17.4 160 408-581 38-199 (331)
16 1ypw_A Transitional endoplasmi 99.3 2.3E-12 7.9E-17 170.0 7.7 142 414-582 236-387 (806)
17 4b4t_J 26S protease regulatory 99.2 1.4E-10 4.9E-15 137.1 14.1 142 413-583 179-335 (405)
18 4b4t_I 26S protease regulatory 99.1 1.8E-10 6.2E-15 136.3 13.5 142 414-583 214-369 (437)
19 4fcw_A Chaperone protein CLPB; 99.1 1.7E-10 5.9E-15 136.2 12.1 199 417-636 48-276 (311)
20 2bjv_A PSP operon transcriptio 99.1 2E-10 6.9E-15 132.2 11.4 211 400-636 13-238 (265)
21 4b4t_M 26S protease regulatory 99.1 2.6E-10 8.9E-15 137.3 11.6 141 414-583 213-368 (434)
22 4b4t_L 26S protease subunit RP 99.0 3E-10 1E-14 137.0 10.4 139 414-583 213-368 (437)
23 4b4t_H 26S protease regulatory 99.0 7.1E-10 2.4E-14 132.7 13.0 142 413-583 240-396 (467)
24 4b4t_K 26S protease regulatory 99.0 4.9E-10 1.7E-14 134.9 9.7 139 414-583 204-360 (428)
25 3m6a_A ATP-dependent protease 99.0 4.3E-10 1.5E-14 142.0 9.5 197 415-636 107-313 (543)
26 3pfi_A Holliday junction ATP-d 99.0 3.8E-09 1.3E-13 126.3 16.8 137 417-582 56-199 (338)
27 3t15_A Ribulose bisphosphate c 99.0 3.9E-10 1.3E-14 131.3 7.6 147 417-581 37-199 (293)
28 1xwi_A SKD1 protein; VPS4B, AA 99.0 1.2E-09 4.1E-14 129.0 11.1 140 416-582 45-194 (322)
29 1ojl_A Transcriptional regulat 99.0 2E-09 6.8E-14 125.9 12.5 212 400-637 9-234 (304)
30 2chg_A Replication factor C sm 99.0 9.3E-09 3.2E-13 114.6 17.4 142 408-581 28-175 (226)
31 2zan_A Vacuolar protein sortin 98.9 2.4E-09 8.3E-14 132.1 12.3 148 415-582 166-316 (444)
32 3nbx_X ATPase RAVA; AAA+ ATPas 98.9 4.2E-09 1.5E-13 130.1 14.4 157 407-578 32-194 (500)
33 1ofh_A ATP-dependent HSL prote 98.9 8.2E-09 2.8E-13 121.7 15.9 150 415-578 49-213 (310)
34 2qp9_X Vacuolar protein sortin 98.9 1.8E-09 6.2E-14 129.3 10.2 143 416-582 84-232 (355)
35 3f9v_A Minichromosome maintena 98.9 2.9E-09 1E-13 135.5 12.3 147 418-583 329-493 (595)
36 1hqc_A RUVB; extended AAA-ATPa 98.9 2.3E-08 7.7E-13 118.7 18.4 139 415-581 37-182 (324)
37 3eie_A Vacuolar protein sortin 98.9 3E-09 1E-13 126.0 9.3 141 416-582 51-199 (322)
38 3u61_B DNA polymerase accessor 98.8 8.3E-09 2.8E-13 122.5 12.6 143 407-583 36-181 (324)
39 3pvs_A Replication-associated 98.8 1E-08 3.5E-13 125.8 12.7 179 408-637 40-221 (447)
40 3cf0_A Transitional endoplasmi 98.8 4.6E-09 1.6E-13 123.0 8.0 144 414-582 47-201 (301)
41 3h4m_A Proteasome-activating n 98.8 5E-09 1.7E-13 121.9 8.1 145 414-582 49-203 (285)
42 3te6_A Regulatory protein SIR3 98.8 2.2E-08 7.7E-13 115.9 12.7 162 404-583 31-214 (318)
43 1jbk_A CLPB protein; beta barr 98.8 8.1E-10 2.8E-14 120.1 -0.2 137 415-575 42-193 (195)
44 3hws_A ATP-dependent CLP prote 98.8 7.2E-09 2.5E-13 125.0 7.9 201 415-636 50-320 (363)
45 3pxg_A Negative regulator of g 98.7 4.2E-09 1.4E-13 130.8 4.9 134 414-583 199-341 (468)
46 1g8p_A Magnesium-chelatase 38 98.7 2.6E-08 9E-13 119.6 11.1 151 415-579 44-231 (350)
47 2qz4_A Paraplegin; AAA+, SPG7, 98.7 2.8E-08 9.4E-13 114.0 10.7 141 414-583 37-193 (262)
48 3syl_A Protein CBBX; photosynt 98.7 8.6E-09 3E-13 121.5 6.5 183 415-636 66-260 (309)
49 3vfd_A Spastin; ATPase, microt 98.7 2.4E-08 8.2E-13 121.5 8.4 145 415-582 147-297 (389)
50 3hu3_A Transitional endoplasmi 98.7 3E-08 1E-12 122.9 9.2 143 413-582 235-387 (489)
51 2ce7_A Cell division protein F 98.6 1.8E-07 6.2E-12 114.7 15.8 138 416-582 49-201 (476)
52 3d8b_A Fidgetin-like protein 1 98.6 3.2E-08 1.1E-12 118.6 9.0 143 415-582 116-266 (357)
53 1njg_A DNA polymerase III subu 98.6 3.3E-07 1.1E-11 103.4 16.7 142 407-582 33-200 (250)
54 1sxj_A Activator 1 95 kDa subu 98.6 2.9E-07 9.8E-12 116.0 17.6 143 416-581 77-223 (516)
55 1lv7_A FTSH; alpha/beta domain 98.6 5.5E-08 1.9E-12 111.1 9.7 139 415-582 44-197 (257)
56 2p65_A Hypothetical protein PF 98.6 3.2E-09 1.1E-13 114.7 -1.1 129 416-568 43-187 (187)
57 1um8_A ATP-dependent CLP prote 98.6 6.9E-08 2.3E-12 117.0 9.9 155 415-577 71-283 (376)
58 2chq_A Replication factor C sm 98.6 3.6E-08 1.2E-12 116.6 6.7 167 372-581 3-175 (319)
59 3uk6_A RUVB-like 2; hexameric 98.6 3.2E-07 1.1E-11 110.9 14.6 174 395-582 45-274 (368)
60 3b9p_A CG5977-PA, isoform A; A 98.6 2.1E-07 7.3E-12 108.7 12.2 140 415-582 53-204 (297)
61 3bos_A Putative DNA replicatio 98.6 3.3E-07 1.1E-11 103.4 13.4 143 405-581 39-188 (242)
62 3co5_A Putative two-component 98.6 1.7E-08 5.7E-13 104.0 2.3 128 402-567 13-140 (143)
63 1iqp_A RFCS; clamp loader, ext 98.5 1.2E-07 4E-12 112.6 9.9 143 407-581 35-183 (327)
64 2v1u_A Cell division control p 98.5 1.9E-07 6.7E-12 113.5 12.1 156 414-582 42-216 (387)
65 1l8q_A Chromosomal replication 98.5 1.9E-07 6.5E-12 110.7 11.1 139 416-581 37-180 (324)
66 2r62_A Cell division protease 98.5 4.4E-08 1.5E-12 112.7 3.9 142 415-581 43-197 (268)
67 3n70_A Transport activator; si 98.5 3.3E-08 1.1E-12 102.1 2.3 130 401-567 9-142 (145)
68 2qby_B CDC6 homolog 3, cell di 98.5 7.5E-07 2.6E-11 108.3 14.8 155 406-581 33-211 (384)
69 1sxj_B Activator 1 37 kDa subu 98.5 3.3E-07 1.1E-11 108.4 11.3 145 406-581 30-180 (323)
70 1sxj_D Activator 1 41 kDa subu 98.5 5.2E-07 1.8E-11 108.3 12.3 149 408-581 48-206 (353)
71 2x8a_A Nuclear valosin-contain 98.4 5E-07 1.7E-11 103.7 10.7 140 415-581 43-192 (274)
72 1in4_A RUVB, holliday junction 98.4 1.5E-06 5.1E-11 103.1 13.1 136 417-581 52-194 (334)
73 2dhr_A FTSH; AAA+ protein, hex 98.4 9.4E-07 3.2E-11 109.0 11.5 141 416-581 64-215 (499)
74 1d2n_A N-ethylmaleimide-sensit 98.3 3.8E-07 1.3E-11 105.1 6.8 136 416-577 64-209 (272)
75 1fnn_A CDC6P, cell division co 98.3 1.7E-06 5.7E-11 105.4 12.4 149 418-582 46-208 (389)
76 1sxj_C Activator 1 40 kDa subu 98.3 3.4E-06 1.2E-10 100.5 14.0 145 405-581 33-183 (340)
77 1ny5_A Transcriptional regulat 98.3 2.2E-06 7.5E-11 103.6 12.4 211 401-637 145-369 (387)
78 2z4s_A Chromosomal replication 98.3 1.6E-06 5.5E-11 106.6 11.0 141 416-581 130-277 (440)
79 2qby_A CDC6 homolog 1, cell di 98.3 1.8E-06 6E-11 104.9 10.6 151 416-581 45-211 (386)
80 1jr3_A DNA polymerase III subu 98.3 3.9E-06 1.3E-10 101.5 13.4 140 408-581 27-192 (373)
81 1a5t_A Delta prime, HOLB; zinc 98.2 9.3E-06 3.2E-10 96.3 15.0 138 408-579 13-179 (334)
82 3k1j_A LON protease, ATP-depen 98.2 5.4E-06 1.9E-10 106.4 13.7 152 487-653 203-372 (604)
83 3f8t_A Predicted ATPase involv 98.2 7.8E-07 2.7E-11 105.9 5.2 146 408-571 224-385 (506)
84 1ixz_A ATP-dependent metallopr 98.2 1.2E-06 4.2E-11 99.7 6.7 139 416-581 49-200 (254)
85 3pxg_A Negative regulator of g 98.1 1.4E-05 5E-10 99.0 15.6 149 736-939 182-340 (468)
86 3syl_A Protein CBBX; photosynt 98.1 1E-05 3.5E-10 95.0 13.4 147 754-940 64-220 (309)
87 1ypw_A Transitional endoplasmi 98.1 9.9E-08 3.4E-12 125.9 -4.4 139 414-581 509-662 (806)
88 1iy2_A ATP-dependent metallopr 98.1 2.2E-06 7.6E-11 98.9 7.0 141 416-581 73-224 (278)
89 2gno_A DNA polymerase III, gam 98.1 1.2E-05 4E-10 93.5 13.0 137 408-580 8-152 (305)
90 3dzd_A Transcriptional regulat 98.1 6.3E-06 2.1E-10 98.7 10.8 213 400-637 136-360 (368)
91 1jbk_A CLPB protein; beta barr 98.0 2E-05 7E-10 84.9 12.1 136 756-930 42-191 (195)
92 1sxj_E Activator 1 40 kDa subu 98.0 1.7E-05 5.8E-10 95.1 11.3 74 485-581 134-207 (354)
93 1g41_A Heat shock protein HSLU 98.0 5.1E-05 1.7E-09 91.6 15.2 89 486-577 251-346 (444)
94 4fcw_A Chaperone protein CLPB; 97.9 3.6E-05 1.2E-09 90.4 10.9 169 738-939 21-231 (311)
95 2chg_A Replication factor C sm 97.8 0.00012 4E-09 81.0 14.0 133 757-939 38-176 (226)
96 3pvs_A Replication-associated 97.8 6.4E-05 2.2E-09 92.1 12.7 131 758-940 51-181 (447)
97 3u61_B DNA polymerase accessor 97.8 0.00015 5.3E-09 85.4 14.8 125 760-935 51-176 (324)
98 3pfi_A Holliday junction ATP-d 97.8 0.0002 6.7E-09 85.1 15.2 146 755-939 53-199 (338)
99 2c9o_A RUVB-like 1; hexameric 97.7 0.00016 5.4E-09 89.5 14.2 75 488-581 298-380 (456)
100 3uk6_A RUVB-like 2; hexameric 97.7 0.00058 2E-08 82.0 17.7 32 908-939 243-274 (368)
101 1g8p_A Magnesium-chelatase 38 97.7 2.3E-05 7.9E-10 93.7 4.9 151 30-193 32-218 (350)
102 2qz4_A Paraplegin; AAA+, SPG7, 97.6 0.00059 2E-08 77.6 15.1 69 757-826 39-109 (262)
103 4b4t_J 26S protease regulatory 97.6 0.00011 3.9E-09 87.0 9.1 71 753-825 179-251 (405)
104 2p65_A Hypothetical protein PF 97.6 0.00017 5.8E-09 77.1 9.4 94 755-848 41-157 (187)
105 3vfd_A Spastin; ATPase, microt 97.5 0.0005 1.7E-08 83.2 14.2 150 754-939 145-297 (389)
106 4b4t_K 26S protease regulatory 97.5 0.00024 8.3E-09 85.5 11.1 70 753-824 203-274 (428)
107 1w5s_A Origin recognition comp 97.5 9.4E-05 3.2E-09 90.5 7.5 157 416-581 50-229 (412)
108 4b4t_L 26S protease subunit RP 97.5 0.00033 1.1E-08 84.4 11.3 71 753-825 212-284 (437)
109 4b4t_H 26S protease regulatory 97.4 0.00031 1.1E-08 84.2 10.3 71 753-825 240-312 (467)
110 1njg_A DNA polymerase III subu 97.4 0.0015 5.1E-08 72.9 15.5 128 758-939 46-200 (250)
111 1um8_A ATP-dependent CLP prote 97.4 0.00054 1.9E-08 82.5 11.9 89 754-842 69-178 (376)
112 1tue_A Replication protein E1; 97.4 0.00039 1.3E-08 73.9 9.1 133 405-568 44-180 (212)
113 2w58_A DNAI, primosome compone 97.4 0.0003 1E-08 76.6 8.6 47 405-451 37-91 (202)
114 2v1u_A Cell division control p 97.4 0.00086 2.9E-08 81.0 13.5 143 755-939 42-216 (387)
115 3hws_A ATP-dependent CLP prote 97.4 0.00017 5.8E-09 86.5 7.1 84 756-840 50-155 (363)
116 3ec2_A DNA replication protein 97.4 0.00029 9.9E-09 75.2 8.1 56 395-450 11-75 (180)
117 4b4t_M 26S protease regulatory 97.4 0.00017 6E-09 86.8 7.0 70 753-824 212-283 (434)
118 1d2n_A N-ethylmaleimide-sensit 97.4 0.00038 1.3E-08 79.8 9.6 70 754-824 61-133 (272)
119 4b4t_I 26S protease regulatory 97.3 0.00023 7.7E-09 84.6 7.4 71 753-825 213-285 (437)
120 3h4m_A Proteasome-activating n 97.3 0.00052 1.8E-08 79.2 10.4 68 756-824 50-119 (285)
121 3d8b_A Fidgetin-like protein 1 97.3 0.00097 3.3E-08 79.5 13.1 69 755-824 115-185 (357)
122 2chq_A Replication factor C sm 97.3 0.00056 1.9E-08 80.3 10.5 132 758-939 39-176 (319)
123 1iqp_A RFCS; clamp loader, ext 97.3 0.0007 2.4E-08 79.8 11.4 131 758-938 47-183 (327)
124 2bjv_A PSP operon transcriptio 97.3 0.0004 1.4E-08 79.3 8.9 166 741-939 13-196 (265)
125 1sxj_D Activator 1 41 kDa subu 97.3 0.00077 2.6E-08 80.4 11.8 131 758-938 59-206 (353)
126 1hqc_A RUVB; extended AAA-ATPa 97.3 0.0013 4.3E-08 77.5 13.0 143 756-939 37-183 (324)
127 1ofh_A ATP-dependent HSL prote 97.2 0.00052 1.8E-08 80.2 9.3 73 756-828 49-129 (310)
128 1xwi_A SKD1 protein; VPS4B, AA 97.2 0.0047 1.6E-07 72.4 17.3 70 755-825 43-115 (322)
129 2r44_A Uncharacterized protein 97.2 0.00021 7.2E-09 84.6 5.7 135 37-194 40-186 (331)
130 2qgz_A Helicase loader, putati 97.2 0.00055 1.9E-08 79.7 9.1 46 406-451 137-190 (308)
131 3n70_A Transport activator; si 97.2 0.00078 2.7E-08 69.0 8.9 90 741-839 8-100 (145)
132 2kjq_A DNAA-related protein; s 97.2 0.00036 1.2E-08 71.7 6.3 38 415-452 35-74 (149)
133 1sxj_A Activator 1 95 kDa subu 97.2 0.0016 5.6E-08 81.7 13.4 131 757-938 77-223 (516)
134 1sxj_B Activator 1 37 kDa subu 97.2 0.0015 5.2E-08 76.7 12.4 131 758-938 43-180 (323)
135 3nbx_X ATPase RAVA; AAA+ ATPas 97.1 0.00069 2.4E-08 83.7 9.2 143 35-192 33-181 (500)
136 3t15_A Ribulose bisphosphate c 97.1 0.00044 1.5E-08 80.0 7.0 71 755-826 35-110 (293)
137 1u0j_A DNA replication protein 97.1 0.0026 9E-08 71.0 12.9 142 404-577 88-248 (267)
138 2qen_A Walker-type ATPase; unk 97.1 0.0014 4.9E-08 77.8 11.2 160 404-580 19-216 (350)
139 1a5t_A Delta prime, HOLB; zinc 97.1 0.003 1E-07 74.5 13.6 140 38-207 19-178 (334)
140 2fna_A Conserved hypothetical 97.1 0.0016 5.3E-08 77.7 11.2 157 406-580 22-222 (357)
141 3b9p_A CG5977-PA, isoform A; A 97.0 0.002 6.9E-08 74.7 11.2 72 754-826 51-124 (297)
142 3te6_A Regulatory protein SIR3 97.0 0.0041 1.4E-07 71.9 13.5 139 755-940 43-214 (318)
143 1sxj_C Activator 1 40 kDa subu 97.0 0.0038 1.3E-07 73.9 13.2 131 758-938 47-183 (340)
144 1l8q_A Chromosomal replication 96.9 0.0035 1.2E-07 73.7 12.5 132 758-939 38-181 (324)
145 1fnn_A CDC6P, cell division co 96.9 0.0051 1.8E-07 74.2 14.3 137 759-938 46-207 (389)
146 1lv7_A FTSH; alpha/beta domain 96.9 0.0016 5.5E-08 73.8 8.9 67 755-823 44-112 (257)
147 3f9v_A Minichromosome maintena 96.9 0.00074 2.5E-08 85.8 6.6 129 45-193 329-476 (595)
148 3m6a_A ATP-dependent protease 96.9 0.0029 1E-07 79.6 11.7 145 755-937 106-266 (543)
149 3eie_A Vacuolar protein sortin 96.9 0.0011 3.7E-08 77.9 7.2 71 755-826 49-121 (322)
150 1jr3_A DNA polymerase III subu 96.9 0.0039 1.3E-07 74.8 12.2 129 760-939 41-193 (373)
151 3bos_A Putative DNA replicatio 96.8 0.0019 6.4E-08 72.2 8.4 132 756-939 51-189 (242)
152 2zan_A Vacuolar protein sortin 96.8 0.0066 2.2E-07 74.5 13.8 71 755-826 165-238 (444)
153 2ce7_A Cell division protein F 96.8 0.0039 1.3E-07 76.4 11.2 72 754-827 47-120 (476)
154 1sxj_E Activator 1 40 kDa subu 96.7 0.0053 1.8E-07 73.1 11.4 45 887-938 163-207 (354)
155 2qby_A CDC6 homolog 1, cell di 96.7 0.0079 2.7E-07 72.4 12.8 38 756-793 44-87 (386)
156 2z4s_A Chromosomal replication 96.7 0.0057 1.9E-07 74.9 11.6 133 758-939 131-278 (440)
157 1ojl_A Transcriptional regulat 96.6 0.005 1.7E-07 71.5 10.5 163 741-940 9-193 (304)
158 2qp9_X Vacuolar protein sortin 96.6 0.0019 6.5E-08 76.9 6.9 71 755-826 82-154 (355)
159 3co5_A Putative two-component 96.6 0.00065 2.2E-08 69.4 2.2 88 741-839 11-99 (143)
160 2c9o_A RUVB-like 1; hexameric 96.6 0.0027 9.3E-08 78.4 8.3 70 755-825 61-136 (456)
161 3k1j_A LON protease, ATP-depen 96.6 0.0031 1.1E-07 80.7 8.8 165 35-205 52-299 (604)
162 3hu3_A Transitional endoplasmi 96.5 0.003 1E-07 78.0 8.0 68 756-824 237-306 (489)
163 3cf0_A Transitional endoplasmi 96.5 0.0023 7.8E-08 74.4 6.0 69 755-824 47-117 (301)
164 2dhr_A FTSH; AAA+ protein, hex 96.5 0.0059 2E-07 75.3 9.9 70 754-825 62-133 (499)
165 2x8a_A Nuclear valosin-contain 96.4 0.0051 1.7E-07 70.2 8.2 71 753-825 41-113 (274)
166 1tue_A Replication protein E1; 96.3 0.0058 2E-07 65.0 7.4 26 42-67 57-82 (212)
167 2vhj_A Ntpase P4, P4; non- hyd 96.3 0.0027 9.2E-08 72.7 4.8 35 415-450 122-156 (331)
168 3ec2_A DNA replication protein 96.3 0.0072 2.5E-07 64.1 8.1 63 757-825 38-110 (180)
169 3jvv_A Twitching mobility prot 96.3 0.013 4.6E-07 69.1 11.0 127 36-188 115-243 (356)
170 2r62_A Cell division protease 96.2 0.0091 3.1E-07 67.9 9.1 25 43-67 44-68 (268)
171 2gno_A DNA polymerase III, gam 96.1 0.02 7E-07 66.1 11.4 131 43-207 18-150 (305)
172 2qby_B CDC6 homolog 3, cell di 96.0 0.023 7.9E-07 68.3 11.8 153 757-938 45-211 (384)
173 1ixz_A ATP-dependent metallopr 96.0 0.015 5E-07 65.6 9.4 70 753-824 46-117 (254)
174 1in4_A RUVB, holliday junction 96.0 0.03 1E-06 65.9 12.1 78 756-840 50-127 (334)
175 3a4m_A L-seryl-tRNA(SEC) kinas 95.9 0.0058 2E-07 69.3 5.1 89 44-145 5-94 (260)
176 2r2a_A Uncharacterized protein 95.9 0.01 3.5E-07 63.9 6.8 22 418-439 7-28 (199)
177 2kjq_A DNAA-related protein; s 95.8 0.013 4.4E-07 60.0 7.0 59 756-828 35-96 (149)
178 1iy2_A ATP-dependent metallopr 95.8 0.019 6.6E-07 65.6 9.3 70 753-824 70-141 (278)
179 1i84_S Smooth muscle myosin he 95.6 0.034 1.1E-06 76.6 11.9 27 414-440 167-193 (1184)
180 2plr_A DTMP kinase, probable t 95.6 0.0076 2.6E-07 65.7 4.5 26 44-69 5-30 (213)
181 1i84_S Smooth muscle myosin he 95.1 0.054 1.9E-06 74.5 11.4 17 796-812 659-675 (1184)
182 2orw_A Thymidine kinase; TMTK, 95.1 0.024 8.1E-07 60.3 6.2 95 416-517 3-102 (184)
183 2eyu_A Twitching motility prot 95.0 0.05 1.7E-06 61.3 9.0 26 45-70 27-52 (261)
184 1ex7_A Guanylate kinase; subst 94.9 0.014 4.6E-07 62.1 3.7 27 416-442 1-27 (186)
185 1g41_A Heat shock protein HSLU 94.8 0.032 1.1E-06 67.3 7.1 37 756-792 49-85 (444)
186 3hjn_A DTMP kinase, thymidylat 94.7 0.081 2.8E-06 56.8 9.2 111 46-170 3-129 (197)
187 3lv8_A DTMP kinase, thymidylat 94.7 0.031 1.1E-06 61.7 6.0 101 43-144 27-148 (236)
188 4hlc_A DTMP kinase, thymidylat 94.7 0.07 2.4E-06 57.7 8.7 97 46-145 5-119 (205)
189 4eaq_A DTMP kinase, thymidylat 94.6 0.012 4.2E-07 65.0 2.5 26 44-69 27-52 (229)
190 2efr_A General control protein 94.5 2.4 8.3E-05 42.5 18.5 115 1227-1355 16-130 (155)
191 3na7_A HP0958; flagellar bioge 94.4 1.8 6.2E-05 48.2 19.8 45 1303-1347 91-135 (256)
192 1kgd_A CASK, peripheral plasma 94.3 0.018 6.2E-07 61.0 3.1 24 44-67 6-29 (180)
193 1w5s_A Origin recognition comp 94.3 0.067 2.3E-06 64.8 8.5 41 756-796 49-100 (412)
194 4tmk_A Protein (thymidylate ki 94.3 0.036 1.2E-06 60.3 5.3 100 45-145 5-127 (213)
195 1lvg_A Guanylate kinase, GMP k 94.3 0.021 7E-07 61.7 3.3 26 43-68 4-29 (198)
196 2ewv_A Twitching motility prot 94.2 0.087 3E-06 62.7 8.9 88 44-139 137-225 (372)
197 2z0h_A DTMP kinase, thymidylat 94.2 0.054 1.9E-06 58.1 6.5 25 46-70 3-27 (197)
198 1ye8_A Protein THEP1, hypothet 94.0 0.026 8.7E-07 59.7 3.4 24 45-68 2-25 (178)
199 3v9p_A DTMP kinase, thymidylat 94.0 0.072 2.5E-06 58.4 7.0 26 45-70 27-52 (227)
200 1kag_A SKI, shikimate kinase I 94.0 0.022 7.5E-07 59.8 2.8 24 44-67 5-28 (173)
201 3crm_A TRNA delta(2)-isopenten 93.8 0.085 2.9E-06 60.8 7.4 65 759-824 7-103 (323)
202 3upu_A ATP-dependent DNA helic 93.8 0.045 1.5E-06 67.5 5.5 29 412-440 40-69 (459)
203 2fna_A Conserved hypothetical 93.8 0.2 7E-06 59.0 11.2 35 758-792 31-65 (357)
204 2b8t_A Thymidine kinase; deoxy 93.8 0.11 3.8E-06 56.7 8.0 38 415-452 11-50 (223)
205 1s96_A Guanylate kinase, GMP k 93.8 0.029 9.8E-07 61.5 3.3 37 32-68 5-41 (219)
206 1jr3_D DNA polymerase III, del 93.8 0.24 8.2E-06 58.3 11.6 134 416-581 18-156 (343)
207 2qen_A Walker-type ATPase; unk 93.7 0.1 3.4E-06 61.6 8.1 32 758-791 32-63 (350)
208 2fxo_A Myosin heavy chain, car 93.7 3.9 0.00013 40.1 18.0 53 1304-1356 71-123 (129)
209 3kb2_A SPBC2 prophage-derived 93.7 0.033 1.1E-06 58.3 3.4 23 45-67 3-25 (173)
210 3uie_A Adenylyl-sulfate kinase 93.6 0.033 1.1E-06 60.1 3.4 25 44-68 26-50 (200)
211 3c8u_A Fructokinase; YP_612366 93.6 0.035 1.2E-06 60.3 3.6 27 43-69 22-48 (208)
212 2ze6_A Isopentenyl transferase 93.6 0.096 3.3E-06 58.8 7.2 29 760-788 4-32 (253)
213 3vaa_A Shikimate kinase, SK; s 93.5 0.035 1.2E-06 59.9 3.4 33 412-445 21-53 (199)
214 1qhx_A CPT, protein (chloramph 93.5 0.052 1.8E-06 57.2 4.6 32 416-448 3-34 (178)
215 3a00_A Guanylate kinase, GMP k 93.4 0.035 1.2E-06 59.1 3.1 24 45-68 3-26 (186)
216 1ye8_A Protein THEP1, hypothet 93.4 0.05 1.7E-06 57.4 4.2 26 759-784 2-27 (178)
217 2c95_A Adenylate kinase 1; tra 93.3 0.051 1.7E-06 58.2 4.3 30 38-67 4-33 (196)
218 3trf_A Shikimate kinase, SK; a 93.3 0.043 1.5E-06 58.3 3.7 25 43-67 5-29 (185)
219 3tr0_A Guanylate kinase, GMP k 93.3 0.035 1.2E-06 60.0 3.0 24 44-67 8-31 (205)
220 3foz_A TRNA delta(2)-isopenten 93.3 0.1 3.5E-06 59.4 6.9 74 760-841 13-118 (316)
221 3sop_A Neuronal-specific septi 93.3 0.037 1.3E-06 62.7 3.2 25 44-68 3-27 (270)
222 4eun_A Thermoresistant glucoki 93.2 0.041 1.4E-06 59.4 3.4 24 44-67 30-53 (200)
223 1zp6_A Hypothetical protein AT 93.2 0.031 1.1E-06 59.7 2.3 23 44-66 10-32 (191)
224 3asz_A Uridine kinase; cytidin 93.2 0.039 1.3E-06 60.1 3.2 24 45-68 8-31 (211)
225 3upu_A ATP-dependent DNA helic 93.2 0.064 2.2E-06 66.1 5.5 46 25-70 26-72 (459)
226 1z6g_A Guanylate kinase; struc 93.1 0.04 1.4E-06 60.4 3.1 24 44-67 24-47 (218)
227 1kht_A Adenylate kinase; phosp 93.0 0.05 1.7E-06 58.0 3.6 26 44-69 4-29 (192)
228 3ld9_A DTMP kinase, thymidylat 92.9 0.078 2.7E-06 57.9 5.0 111 46-170 24-153 (223)
229 3tau_A Guanylate kinase, GMP k 92.9 0.044 1.5E-06 59.6 3.0 24 44-67 9-32 (208)
230 4edh_A DTMP kinase, thymidylat 92.9 0.088 3E-06 57.3 5.4 98 45-144 8-125 (213)
231 3u1c_A Tropomyosin alpha-1 cha 92.9 3.1 0.00011 38.8 15.0 54 1236-1289 9-62 (101)
232 3t61_A Gluconokinase; PSI-biol 92.9 0.05 1.7E-06 58.8 3.4 23 45-67 20-42 (202)
233 2r8r_A Sensor protein; KDPD, P 92.9 0.6 2.1E-05 50.6 11.8 143 417-575 7-172 (228)
234 1ex7_A Guanylate kinase; subst 92.9 0.047 1.6E-06 57.9 3.1 23 45-67 3-25 (186)
235 1htw_A HI0065; nucleotide-bind 92.9 0.043 1.5E-06 56.6 2.7 27 41-67 29-57 (158)
236 3ney_A 55 kDa erythrocyte memb 92.9 0.047 1.6E-06 58.3 3.1 25 43-67 19-43 (197)
237 1znw_A Guanylate kinase, GMP k 92.9 0.046 1.6E-06 59.4 3.1 28 40-67 17-44 (207)
238 2w58_A DNAI, primosome compone 92.8 0.13 4.3E-06 55.5 6.6 33 758-790 55-90 (202)
239 1knq_A Gluconate kinase; ALFA/ 92.8 0.052 1.8E-06 57.0 3.4 24 44-67 9-32 (175)
240 1nks_A Adenylate kinase; therm 92.8 0.052 1.8E-06 57.9 3.4 25 45-69 3-27 (194)
241 1cke_A CK, MSSA, protein (cyti 92.8 0.051 1.8E-06 59.8 3.4 24 44-67 6-29 (227)
242 2bbw_A Adenylate kinase 4, AK4 92.8 0.055 1.9E-06 60.5 3.7 31 37-67 20-51 (246)
243 2qor_A Guanylate kinase; phosp 92.8 0.042 1.4E-06 59.5 2.6 25 43-67 12-36 (204)
244 1ly1_A Polynucleotide kinase; 92.7 0.05 1.7E-06 57.3 3.1 22 44-65 3-24 (181)
245 1via_A Shikimate kinase; struc 92.7 0.056 1.9E-06 56.8 3.4 24 45-68 6-29 (175)
246 2orw_A Thymidine kinase; TMTK, 92.7 0.19 6.5E-06 53.2 7.5 81 759-841 5-102 (184)
247 1kgd_A CASK, peripheral plasma 92.7 0.056 1.9E-06 57.2 3.4 27 415-441 4-30 (180)
248 2qor_A Guanylate kinase; phosp 92.7 0.057 1.9E-06 58.4 3.5 30 412-441 8-37 (204)
249 1lvg_A Guanylate kinase, GMP k 92.6 0.057 1.9E-06 58.2 3.4 27 414-440 2-28 (198)
250 2bdt_A BH3686; alpha-beta prot 92.6 0.053 1.8E-06 57.8 3.1 21 45-65 4-24 (189)
251 3na7_A HP0958; flagellar bioge 92.6 3.1 0.0001 46.4 17.6 40 1313-1352 94-133 (256)
252 3vaa_A Shikimate kinase, SK; s 92.6 0.08 2.7E-06 57.0 4.4 32 756-787 24-55 (199)
253 2j41_A Guanylate kinase; GMP, 92.5 0.054 1.8E-06 58.6 3.1 24 44-67 7-30 (207)
254 3jvv_A Twitching mobility prot 92.5 0.23 7.9E-06 58.5 8.6 84 753-843 119-222 (356)
255 2rhm_A Putative kinase; P-loop 92.4 0.053 1.8E-06 57.9 2.9 25 43-67 5-29 (193)
256 1zp6_A Hypothetical protein AT 92.4 0.057 2E-06 57.6 3.1 35 413-448 6-40 (191)
257 3lw7_A Adenylate kinase relate 92.4 0.056 1.9E-06 56.6 3.0 20 44-63 2-21 (179)
258 3trf_A Shikimate kinase, SK; a 92.4 0.084 2.9E-06 55.9 4.4 30 758-787 6-35 (185)
259 3cm0_A Adenylate kinase; ATP-b 92.4 0.068 2.3E-06 56.7 3.6 24 44-67 5-28 (186)
260 3iij_A Coilin-interacting nucl 92.3 0.067 2.3E-06 56.5 3.4 25 43-67 11-35 (180)
261 2f1r_A Molybdopterin-guanine d 92.3 0.045 1.5E-06 57.3 1.9 27 44-70 3-29 (171)
262 3ney_A 55 kDa erythrocyte memb 92.2 0.072 2.5E-06 56.9 3.4 27 415-441 18-44 (197)
263 3a8t_A Adenylate isopentenyltr 92.1 0.16 5.3E-06 58.8 6.2 64 759-823 42-138 (339)
264 4gp7_A Metallophosphoesterase; 92.1 0.076 2.6E-06 55.6 3.4 19 45-63 11-29 (171)
265 3a8t_A Adenylate isopentenyltr 92.0 0.11 3.8E-06 60.0 4.9 63 45-115 42-124 (339)
266 2v54_A DTMP kinase, thymidylat 91.9 0.12 4E-06 55.8 4.9 36 415-450 3-38 (204)
267 2i3b_A HCR-ntpase, human cance 91.9 0.084 2.9E-06 56.2 3.6 27 45-72 3-29 (189)
268 2jaq_A Deoxyguanosine kinase; 91.9 0.077 2.6E-06 57.2 3.4 24 45-68 2-25 (205)
269 1rz3_A Hypothetical protein rb 91.9 0.1 3.5E-06 56.3 4.3 27 44-70 23-49 (201)
270 1qhx_A CPT, protein (chloramph 91.9 0.12 4.2E-06 54.2 4.8 31 759-789 5-35 (178)
271 3exa_A TRNA delta(2)-isopenten 91.9 0.19 6.7E-06 57.2 6.6 76 760-843 6-113 (322)
272 1e6c_A Shikimate kinase; phosp 91.8 0.082 2.8E-06 55.3 3.4 24 45-68 4-27 (173)
273 1y63_A LMAJ004144AAA protein; 91.8 0.082 2.8E-06 56.1 3.4 30 415-444 9-38 (184)
274 3tau_A Guanylate kinase, GMP k 91.8 0.077 2.6E-06 57.6 3.2 28 414-441 6-33 (208)
275 1kag_A SKI, shikimate kinase I 91.8 0.12 4E-06 54.1 4.6 28 759-786 6-33 (173)
276 3e1s_A Exodeoxyribonuclease V, 91.8 0.21 7.1E-06 63.0 7.5 84 42-144 203-302 (574)
277 2iyv_A Shikimate kinase, SK; t 91.7 0.086 2.9E-06 55.9 3.4 24 45-68 4-27 (184)
278 2bwj_A Adenylate kinase 5; pho 91.7 0.1 3.4E-06 56.0 3.9 29 40-68 9-37 (199)
279 3fb4_A Adenylate kinase; psych 91.7 0.086 2.9E-06 57.5 3.4 22 46-67 3-24 (216)
280 2ze6_A Isopentenyl transferase 91.7 0.085 2.9E-06 59.2 3.4 23 45-67 3-25 (253)
281 3umf_A Adenylate kinase; rossm 91.6 0.088 3E-06 57.3 3.4 26 42-67 28-53 (217)
282 2v9p_A Replication protein E1; 91.6 0.086 2.9E-06 60.5 3.4 25 43-67 126-150 (305)
283 2oap_1 GSPE-2, type II secreti 91.6 0.12 4.1E-06 64.0 5.0 45 405-449 249-294 (511)
284 1tev_A UMP-CMP kinase; ploop, 91.6 0.089 3E-06 56.2 3.4 24 44-67 4-27 (196)
285 3aez_A Pantothenate kinase; tr 91.6 0.12 4.2E-06 59.7 4.7 28 45-72 92-119 (312)
286 3sr0_A Adenylate kinase; phosp 91.6 0.091 3.1E-06 56.8 3.4 23 45-67 2-24 (206)
287 3e1s_A Exodeoxyribonuclease V, 91.6 0.076 2.6E-06 67.0 3.2 34 415-448 203-238 (574)
288 1zak_A Adenylate kinase; ATP:A 91.6 0.085 2.9E-06 57.9 3.2 25 44-68 6-30 (222)
289 3tif_A Uncharacterized ABC tra 91.5 0.062 2.1E-06 59.6 2.0 23 45-67 33-55 (235)
290 1np6_A Molybdopterin-guanine d 91.5 0.18 6.1E-06 52.8 5.5 28 43-70 6-33 (174)
291 2cdn_A Adenylate kinase; phosp 91.5 0.093 3.2E-06 56.5 3.4 23 45-67 22-44 (201)
292 4e22_A Cytidylate kinase; P-lo 91.5 0.079 2.7E-06 59.5 2.9 25 43-67 27-51 (252)
293 1rj9_A FTSY, signal recognitio 91.4 0.096 3.3E-06 60.3 3.6 27 44-70 103-129 (304)
294 1p9r_A General secretion pathw 91.4 0.12 4E-06 62.3 4.4 34 36-69 159-193 (418)
295 2cvh_A DNA repair and recombin 91.4 0.13 4.5E-06 56.0 4.6 48 414-462 18-65 (220)
296 1zuh_A Shikimate kinase; alpha 91.4 0.12 4.1E-06 53.8 4.0 30 758-787 8-37 (168)
297 2yvu_A Probable adenylyl-sulfa 91.3 0.1 3.6E-06 55.3 3.6 27 44-70 14-40 (186)
298 2pt5_A Shikimate kinase, SK; a 91.3 0.1 3.4E-06 54.3 3.4 24 45-68 2-25 (168)
299 3u59_A Tropomyosin beta chain; 91.3 4.9 0.00017 37.5 14.5 49 1236-1284 9-57 (101)
300 3kb2_A SPBC2 prophage-derived 91.3 0.12 4.2E-06 53.8 4.1 30 759-788 3-32 (173)
301 1gvn_B Zeta; postsegregational 91.3 0.083 2.8E-06 60.5 2.9 24 44-67 34-57 (287)
302 1knq_A Gluconate kinase; ALFA/ 91.3 0.14 4.8E-06 53.7 4.4 31 757-787 8-38 (175)
303 3lnc_A Guanylate kinase, GMP k 91.2 0.072 2.5E-06 58.9 2.2 23 45-67 29-52 (231)
304 1aky_A Adenylate kinase; ATP:A 91.2 0.1 3.5E-06 57.1 3.4 24 44-67 5-28 (220)
305 1z6g_A Guanylate kinase; struc 91.2 0.11 3.8E-06 56.8 3.6 33 409-441 16-48 (218)
306 3b85_A Phosphate starvation-in 91.2 0.18 6.2E-06 54.5 5.3 32 40-72 19-50 (208)
307 3a00_A Guanylate kinase, GMP k 91.1 0.11 3.7E-06 55.3 3.4 26 416-441 1-26 (186)
308 3b9q_A Chloroplast SRP recepto 91.1 0.12 4E-06 59.6 3.9 26 45-70 102-127 (302)
309 1xjc_A MOBB protein homolog; s 91.1 0.21 7.2E-06 51.8 5.4 27 44-70 5-31 (169)
310 3cmu_A Protein RECA, recombina 91.1 0.16 5.5E-06 71.5 5.9 80 755-845 1772-1855(2050)
311 1qf9_A UMP/CMP kinase, protein 91.1 0.1 3.6E-06 55.5 3.2 24 44-67 7-30 (194)
312 3r20_A Cytidylate kinase; stru 91.1 0.12 4.1E-06 56.8 3.7 28 40-67 6-33 (233)
313 1zuh_A Shikimate kinase; alpha 91.0 0.11 3.9E-06 54.0 3.4 24 45-68 9-32 (168)
314 1via_A Shikimate kinase; struc 91.0 0.15 5.1E-06 53.5 4.3 29 759-787 6-34 (175)
315 3d3q_A TRNA delta(2)-isopenten 91.0 0.29 1E-05 56.7 7.1 25 44-68 8-32 (340)
316 3e70_C DPA, signal recognition 91.0 0.12 4.2E-06 60.1 3.9 27 44-70 130-156 (328)
317 3exa_A TRNA delta(2)-isopenten 91.0 0.15 5.1E-06 58.1 4.5 24 44-67 4-27 (322)
318 3iij_A Coilin-interacting nucl 90.9 0.18 6.1E-06 53.1 4.9 30 758-787 12-41 (180)
319 3eph_A TRNA isopentenyltransfe 90.9 0.31 1.1E-05 57.6 7.2 73 759-839 4-108 (409)
320 2wwf_A Thymidilate kinase, put 90.9 0.11 3.9E-06 56.2 3.4 27 43-69 10-36 (212)
321 2onk_A Molybdate/tungstate ABC 90.9 0.089 3.1E-06 58.4 2.5 24 44-67 25-48 (240)
322 1nn5_A Similar to deoxythymidy 90.9 0.11 3.9E-06 56.3 3.4 27 44-70 10-36 (215)
323 3dl0_A Adenylate kinase; phosp 90.9 0.095 3.2E-06 57.2 2.7 22 46-67 3-24 (216)
324 1zd8_A GTP:AMP phosphotransfer 90.9 0.089 3.1E-06 58.0 2.5 24 44-67 8-31 (227)
325 3nwj_A ATSK2; P loop, shikimat 90.8 0.12 3.9E-06 57.8 3.4 26 43-68 48-73 (250)
326 3foz_A TRNA delta(2)-isopenten 90.8 0.17 5.8E-06 57.6 4.7 24 44-67 11-34 (316)
327 2pez_A Bifunctional 3'-phospho 90.7 0.12 4.2E-06 54.4 3.4 26 44-69 6-31 (179)
328 4eun_A Thermoresistant glucoki 90.7 0.17 5.9E-06 54.4 4.6 31 756-786 28-58 (200)
329 2oap_1 GSPE-2, type II secreti 90.7 0.1 3.4E-06 64.7 3.0 30 38-67 255-284 (511)
330 2ga8_A Hypothetical 39.9 kDa p 90.7 0.21 7.2E-06 58.0 5.5 42 28-69 6-50 (359)
331 2vli_A Antibiotic resistance p 90.7 0.086 2.9E-06 55.7 2.1 25 44-68 6-30 (183)
332 3u1c_A Tropomyosin alpha-1 cha 90.7 7.9 0.00027 36.1 15.1 61 1242-1302 8-68 (101)
333 2cbz_A Multidrug resistance-as 90.7 0.083 2.8E-06 58.6 2.0 24 45-68 33-56 (237)
334 2pcj_A ABC transporter, lipopr 90.7 0.079 2.7E-06 58.2 1.8 23 45-67 32-54 (224)
335 2b8t_A Thymidine kinase; deoxy 90.6 0.57 2E-05 51.0 8.6 89 753-841 8-115 (223)
336 1gtv_A TMK, thymidylate kinase 90.6 0.073 2.5E-06 57.9 1.5 25 45-69 2-26 (214)
337 2gza_A Type IV secretion syste 90.6 0.18 6.3E-06 59.7 5.1 35 407-441 166-200 (361)
338 1jjv_A Dephospho-COA kinase; P 90.6 0.099 3.4E-06 56.5 2.5 21 45-65 4-24 (206)
339 2j41_A Guanylate kinase; GMP, 90.6 0.12 4.2E-06 55.7 3.3 27 414-440 4-30 (207)
340 1e4v_A Adenylate kinase; trans 90.6 0.12 4.2E-06 56.2 3.2 23 45-67 2-24 (214)
341 2xb4_A Adenylate kinase; ATP-b 90.5 0.13 4.4E-06 56.5 3.4 23 45-67 2-24 (223)
342 1m7g_A Adenylylsulfate kinase; 90.5 0.14 4.7E-06 55.7 3.6 30 43-72 25-54 (211)
343 3dzd_A Transcriptional regulat 90.5 1.2 3.9E-05 52.9 11.9 131 710-845 102-252 (368)
344 1s96_A Guanylate kinase, GMP k 90.5 0.13 4.5E-06 56.1 3.4 30 412-441 12-41 (219)
345 1sgw_A Putative ABC transporte 90.4 0.091 3.1E-06 57.1 2.0 23 45-67 37-59 (214)
346 3tr0_A Guanylate kinase, GMP k 90.4 0.13 4.5E-06 55.4 3.3 27 414-440 5-31 (205)
347 2pbr_A DTMP kinase, thymidylat 90.3 0.14 4.7E-06 54.6 3.4 26 45-70 2-27 (195)
348 2p5t_B PEZT; postsegregational 90.3 0.095 3.3E-06 58.8 2.2 25 44-68 33-57 (253)
349 2if2_A Dephospho-COA kinase; a 90.3 0.12 4.1E-06 55.7 2.9 22 45-67 3-24 (204)
350 4gkw_A Spindle assembly abnorm 90.3 7.5 0.00026 36.5 14.1 90 1238-1351 13-102 (167)
351 1gvn_B Zeta; postsegregational 90.2 0.16 5.5E-06 58.0 4.0 25 417-441 34-58 (287)
352 3gfo_A Cobalt import ATP-bindi 90.2 0.095 3.3E-06 59.4 2.0 23 45-67 36-58 (275)
353 3be4_A Adenylate kinase; malar 90.2 0.14 4.6E-06 56.0 3.2 23 45-67 7-29 (217)
354 3oja_B Anopheles plasmodium-re 90.2 1.8 6.2E-05 55.0 14.3 49 1307-1355 535-583 (597)
355 2a5y_B CED-4; apoptosis; HET: 90.2 0.73 2.5E-05 58.0 10.3 130 417-579 153-305 (549)
356 1b0u_A Histidine permease; ABC 90.1 0.099 3.4E-06 58.9 2.0 23 45-67 34-56 (262)
357 2ff7_A Alpha-hemolysin translo 90.1 0.1 3.4E-06 58.3 2.0 23 45-67 37-59 (247)
358 2jeo_A Uridine-cytidine kinase 90.1 0.15 5E-06 56.9 3.4 24 45-68 27-50 (245)
359 1ukz_A Uridylate kinase; trans 90.1 0.12 4.2E-06 55.6 2.7 23 45-67 17-39 (203)
360 3kta_A Chromosome segregation 90.0 0.13 4.3E-06 54.4 2.7 23 45-67 28-50 (182)
361 3fvq_A Fe(3+) IONS import ATP- 90.0 0.11 3.7E-06 60.9 2.4 23 45-67 32-54 (359)
362 3llm_A ATP-dependent RNA helic 90.0 0.37 1.3E-05 53.2 6.6 27 38-64 71-97 (235)
363 2og2_A Putative signal recogni 89.9 0.17 5.8E-06 59.5 3.9 26 45-70 159-184 (359)
364 1mv5_A LMRA, multidrug resista 89.9 0.1 3.6E-06 58.1 2.0 23 45-67 30-52 (243)
365 1g6h_A High-affinity branched- 89.9 0.1 3.6E-06 58.6 2.0 23 45-67 35-57 (257)
366 3tlx_A Adenylate kinase 2; str 89.9 0.38 1.3E-05 53.5 6.6 30 758-787 30-59 (243)
367 2iyv_A Shikimate kinase, SK; t 89.9 0.2 6.8E-06 53.0 4.1 29 759-787 4-32 (184)
368 1e6c_A Shikimate kinase; phosp 89.9 0.21 7.1E-06 52.1 4.2 29 759-787 4-32 (173)
369 2rhm_A Putative kinase; P-loop 89.9 0.2 6.9E-06 53.3 4.2 29 759-787 7-35 (193)
370 3tlx_A Adenylate kinase 2; str 89.9 0.16 5.3E-06 56.7 3.4 25 43-67 29-53 (243)
371 1ji0_A ABC transporter; ATP bi 89.8 0.11 3.7E-06 57.8 2.0 23 45-67 34-56 (240)
372 2px0_A Flagellar biosynthesis 89.8 0.25 8.4E-06 56.7 5.1 39 44-82 106-144 (296)
373 1y63_A LMAJ004144AAA protein; 89.8 0.23 7.7E-06 52.6 4.5 29 759-787 12-41 (184)
374 4g1u_C Hemin import ATP-bindin 89.7 0.1 3.5E-06 58.9 1.8 23 45-67 39-61 (266)
375 2ghi_A Transport protein; mult 89.7 0.11 3.8E-06 58.4 2.0 23 45-67 48-70 (260)
376 2d2e_A SUFC protein; ABC-ATPas 89.7 0.13 4.4E-06 57.5 2.6 22 45-66 31-52 (250)
377 4a74_A DNA repair and recombin 89.6 0.14 4.9E-06 56.2 2.9 25 43-67 25-49 (231)
378 2gza_A Type IV secretion syste 89.6 0.14 4.6E-06 60.8 2.8 30 39-68 171-200 (361)
379 3t61_A Gluconokinase; PSI-biol 89.6 0.21 7.1E-06 53.8 4.1 29 759-787 20-48 (202)
380 2iut_A DNA translocase FTSK; n 89.6 0.58 2E-05 57.9 8.5 148 413-576 211-419 (574)
381 2pze_A Cystic fibrosis transme 89.6 0.11 3.9E-06 57.1 2.0 24 45-68 36-59 (229)
382 1odf_A YGR205W, hypothetical 3 89.6 0.18 6.2E-06 57.6 3.7 27 44-70 32-58 (290)
383 3rlf_A Maltose/maltodextrin im 89.6 0.13 4.4E-06 60.8 2.5 23 45-67 31-53 (381)
384 2zu0_C Probable ATP-dependent 89.6 0.13 4.5E-06 58.1 2.5 22 45-66 48-69 (267)
385 3cm0_A Adenylate kinase; ATP-b 89.6 0.21 7.1E-06 52.9 4.0 28 759-786 6-33 (186)
386 2olj_A Amino acid ABC transpor 89.6 0.11 3.9E-06 58.3 2.0 23 45-67 52-74 (263)
387 1aky_A Adenylate kinase; ATP:A 89.6 0.24 8.3E-06 54.1 4.7 30 758-787 5-34 (220)
388 2pt7_A CAG-ALFA; ATPase, prote 89.6 0.21 7.3E-06 58.3 4.4 36 405-440 160-195 (330)
389 1ak2_A Adenylate kinase isoenz 89.5 0.17 5.9E-06 55.9 3.4 22 46-67 19-40 (233)
390 3bas_A Myosin heavy chain, str 89.5 3.8 0.00013 37.2 11.6 53 1238-1291 3-55 (89)
391 1z47_A CYSA, putative ABC-tran 89.5 0.13 4.6E-06 60.2 2.6 23 45-67 43-65 (355)
392 2qgz_A Helicase loader, putati 89.5 0.25 8.7E-06 57.0 4.9 26 43-68 152-177 (308)
393 2eqb_B RAB guanine nucleotide 89.4 6.6 0.00023 35.7 12.7 64 1240-1303 2-65 (97)
394 2ixe_A Antigen peptide transpo 89.4 0.12 4.1E-06 58.5 2.0 23 45-67 47-69 (271)
395 1vpl_A ABC transporter, ATP-bi 89.4 0.12 4.1E-06 57.9 2.0 23 45-67 43-65 (256)
396 3lw7_A Adenylate kinase relate 89.4 0.24 8.2E-06 51.6 4.3 28 759-787 3-30 (179)
397 1oix_A RAS-related protein RAB 89.4 0.16 5.4E-06 54.2 2.9 23 44-66 30-52 (191)
398 1xx6_A Thymidine kinase; NESG, 89.4 0.22 7.6E-06 52.9 4.0 93 416-517 8-107 (191)
399 4b3f_X DNA-binding protein smu 89.4 0.24 8.2E-06 63.8 5.1 43 408-450 197-241 (646)
400 2qt1_A Nicotinamide riboside k 89.4 0.14 4.7E-06 55.5 2.4 24 44-67 22-45 (207)
401 2yyz_A Sugar ABC transporter, 89.3 0.14 4.8E-06 60.2 2.6 23 45-67 31-53 (359)
402 1svm_A Large T antigen; AAA+ f 89.3 0.23 7.8E-06 58.9 4.4 26 42-67 168-193 (377)
403 2it1_A 362AA long hypothetical 89.3 0.14 4.8E-06 60.2 2.5 23 45-67 31-53 (362)
404 2c95_A Adenylate kinase 1; tra 89.2 0.25 8.6E-06 52.6 4.4 29 759-787 11-39 (196)
405 1ic2_A Tropomyosin alpha chain 89.2 3.9 0.00013 36.5 11.3 53 1244-1296 7-59 (81)
406 2yhs_A FTSY, cell division pro 89.2 0.2 7E-06 60.8 3.9 26 45-70 295-320 (503)
407 3nh6_A ATP-binding cassette SU 89.2 0.094 3.2E-06 60.3 0.9 23 45-67 82-104 (306)
408 2f9l_A RAB11B, member RAS onco 89.2 0.18 6E-06 54.1 3.1 23 44-66 6-28 (199)
409 2qi9_C Vitamin B12 import ATP- 89.1 0.13 4.5E-06 57.4 2.0 23 45-67 28-50 (249)
410 1n0w_A DNA repair protein RAD5 89.1 0.36 1.2E-05 53.4 5.8 48 414-461 22-77 (243)
411 2ihy_A ABC transporter, ATP-bi 89.1 0.13 4.5E-06 58.5 2.0 23 45-67 49-71 (279)
412 2ehv_A Hypothetical protein PH 89.1 0.17 5.7E-06 56.5 2.9 25 42-66 29-53 (251)
413 1w36_D RECD, exodeoxyribonucle 89.0 0.92 3.1E-05 57.7 10.0 29 42-70 163-191 (608)
414 2j9r_A Thymidine kinase; TK1, 89.0 0.98 3.4E-05 48.5 8.6 95 416-517 28-127 (214)
415 3io5_A Recombination and repai 89.0 1.2 4E-05 50.8 9.7 98 748-856 13-132 (333)
416 2v54_A DTMP kinase, thymidylat 89.0 0.16 5.6E-06 54.6 2.7 24 44-67 5-28 (204)
417 1znw_A Guanylate kinase, GMP k 89.0 0.2 7E-06 54.1 3.4 30 412-441 16-45 (207)
418 1cke_A CK, MSSA, protein (cyti 88.9 0.26 8.8E-06 54.1 4.3 28 759-786 7-34 (227)
419 2pt5_A Shikimate kinase, SK; a 88.9 0.25 8.7E-06 51.2 4.0 29 759-787 2-30 (168)
420 1v43_A Sugar-binding transport 88.9 0.16 5.3E-06 60.1 2.5 23 45-67 39-61 (372)
421 2cdn_A Adenylate kinase; phosp 88.9 0.26 8.8E-06 53.0 4.1 29 759-787 22-50 (201)
422 3nwj_A ATSK2; P loop, shikimat 88.8 0.28 9.5E-06 54.7 4.5 31 757-787 48-78 (250)
423 1g29_1 MALK, maltose transport 88.8 0.16 5.4E-06 60.2 2.6 23 45-67 31-53 (372)
424 1c1g_A Tropomyosin; contractIl 88.8 32 0.0011 37.9 43.3 17 1333-1349 261-277 (284)
425 2qag_B Septin-6, protein NEDD5 88.8 0.15 5.3E-06 61.0 2.5 27 40-66 35-65 (427)
426 2nq2_C Hypothetical ABC transp 88.8 0.14 4.8E-06 57.3 2.0 23 45-67 33-55 (253)
427 2qmh_A HPR kinase/phosphorylas 88.8 0.17 5.9E-06 53.5 2.5 26 415-440 33-58 (205)
428 3o0z_A RHO-associated protein 88.8 22 0.00074 36.0 19.2 101 1259-1359 36-140 (168)
429 1tq4_A IIGP1, interferon-induc 88.8 0.29 1E-05 58.6 4.8 39 27-65 52-91 (413)
430 2npi_A Protein CLP1; CLP1-PCF1 88.7 0.17 5.7E-06 61.9 2.7 28 45-72 140-167 (460)
431 1u0j_A DNA replication protein 88.7 0.55 1.9E-05 52.4 6.7 24 43-66 104-127 (267)
432 3dl0_A Adenylate kinase; phosp 88.7 0.27 9.4E-06 53.4 4.3 29 759-787 2-30 (216)
433 3uie_A Adenylyl-sulfate kinase 88.7 0.39 1.3E-05 51.5 5.4 27 755-781 23-49 (200)
434 2pt7_A CAG-ALFA; ATPase, prote 88.7 0.16 5.6E-06 59.2 2.6 30 39-68 167-196 (330)
435 3c8u_A Fructokinase; YP_612366 88.7 0.28 9.5E-06 53.1 4.2 27 755-781 20-46 (208)
436 3tqc_A Pantothenate kinase; bi 88.7 0.21 7.2E-06 57.7 3.4 25 45-69 94-118 (321)
437 2pez_A Bifunctional 3'-phospho 88.6 0.33 1.1E-05 51.0 4.7 33 757-789 5-40 (179)
438 2yz2_A Putative ABC transporte 88.6 0.15 5E-06 57.7 2.0 23 45-67 35-57 (266)
439 1w36_D RECD, exodeoxyribonucle 88.6 0.27 9.4E-06 62.5 4.8 26 415-440 163-188 (608)
440 2qmh_A HPR kinase/phosphorylas 88.6 0.19 6.6E-06 53.1 2.7 24 44-67 35-58 (205)
441 1sq5_A Pantothenate kinase; P- 88.6 0.2 6.9E-06 58.0 3.2 25 44-68 81-105 (308)
442 3gd7_A Fusion complex of cysti 88.6 0.16 5.4E-06 60.5 2.4 23 45-67 49-71 (390)
443 3crm_A TRNA delta(2)-isopenten 88.6 0.18 6.1E-06 58.1 2.7 24 44-67 6-29 (323)
444 1odf_A YGR205W, hypothetical 3 88.5 1.2 4E-05 50.8 9.5 24 759-782 33-56 (290)
445 1tev_A UMP-CMP kinase; ploop, 88.5 0.3 1E-05 52.0 4.3 28 759-786 5-32 (196)
446 1ly1_A Polynucleotide kinase; 88.5 0.24 8.1E-06 52.0 3.4 27 759-785 4-31 (181)
447 1vht_A Dephospho-COA kinase; s 88.5 0.2 7E-06 54.6 3.0 23 43-65 4-26 (218)
448 3d31_A Sulfate/molybdate ABC t 88.4 0.13 4.5E-06 60.2 1.5 23 45-67 28-50 (348)
449 2bwj_A Adenylate kinase 5; pho 88.4 0.31 1.1E-05 52.1 4.4 29 759-787 14-42 (199)
450 1htw_A HI0065; nucleotide-bind 88.4 0.22 7.6E-06 51.2 3.0 28 413-440 30-57 (158)
451 1qf9_A UMP/CMP kinase, protein 88.4 0.32 1.1E-05 51.6 4.4 29 759-787 8-36 (194)
452 2vli_A Antibiotic resistance p 88.4 0.23 7.9E-06 52.3 3.3 28 759-786 7-34 (183)
453 1uf9_A TT1252 protein; P-loop, 88.4 0.2 6.9E-06 53.8 2.9 20 46-65 11-30 (203)
454 1zd8_A GTP:AMP phosphotransfer 88.3 0.33 1.1E-05 53.3 4.6 29 759-787 9-37 (227)
455 3sr0_A Adenylate kinase; phosp 88.2 0.32 1.1E-05 52.4 4.3 28 760-787 3-30 (206)
456 2pjz_A Hypothetical protein ST 88.2 0.16 5.5E-06 57.1 2.0 23 45-67 32-54 (263)
457 2grj_A Dephospho-COA kinase; T 88.2 0.27 9.3E-06 52.4 3.7 25 43-67 12-36 (192)
458 3fb4_A Adenylate kinase; psych 88.2 0.3 1E-05 53.1 4.1 29 759-787 2-30 (216)
459 4gp7_A Metallophosphoesterase; 88.2 0.14 4.9E-06 53.5 1.5 23 415-437 8-30 (171)
460 1vma_A Cell division protein F 88.1 0.26 9E-06 56.6 3.7 27 44-70 105-131 (306)
461 3dm5_A SRP54, signal recogniti 88.1 0.66 2.3E-05 55.8 7.3 32 43-75 100-131 (443)
462 2vhj_A Ntpase P4, P4; non- hyd 88.0 0.39 1.3E-05 54.9 5.0 32 759-790 125-156 (331)
463 2ius_A DNA translocase FTSK; n 88.0 0.35 1.2E-05 59.4 4.9 42 44-85 168-210 (512)
464 1zj6_A ADP-ribosylation factor 88.0 0.32 1.1E-05 51.3 4.1 35 29-65 4-38 (187)
465 1f2t_A RAD50 ABC-ATPase; DNA d 87.9 0.28 9.6E-06 49.9 3.4 23 45-67 25-47 (149)
466 2jaq_A Deoxyguanosine kinase; 87.9 0.32 1.1E-05 52.2 4.0 28 759-786 2-29 (205)
467 3d3q_A TRNA delta(2)-isopenten 87.8 0.68 2.3E-05 53.6 7.0 29 759-787 9-37 (340)
468 3be4_A Adenylate kinase; malar 87.8 0.35 1.2E-05 52.7 4.4 29 759-787 7-35 (217)
469 4e22_A Cytidylate kinase; P-lo 87.8 0.39 1.3E-05 53.7 4.9 32 755-786 25-56 (252)
470 3tui_C Methionine import ATP-b 87.7 0.21 7E-06 58.7 2.5 23 45-67 56-78 (366)
471 1kht_A Adenylate kinase; phosp 87.7 0.3 1E-05 51.7 3.8 24 759-782 5-28 (192)
472 1e4v_A Adenylate kinase; trans 87.7 0.34 1.2E-05 52.6 4.2 29 759-787 2-30 (214)
473 2bbs_A Cystic fibrosis transme 87.7 0.17 6E-06 57.7 1.9 24 45-68 66-89 (290)
474 1z2a_A RAS-related protein RAB 87.6 0.26 8.9E-06 50.7 3.1 23 43-65 5-27 (168)
475 1lw7_A Transcriptional regulat 87.6 0.2 6.8E-06 59.6 2.4 25 43-67 170-194 (365)
476 2eyu_A Twitching motility prot 87.6 0.28 9.7E-06 55.1 3.5 26 755-780 23-48 (261)
477 2wji_A Ferrous iron transport 87.6 0.25 8.6E-06 51.1 2.9 22 44-65 4-25 (165)
478 2z43_A DNA repair and recombin 87.5 0.48 1.6E-05 55.2 5.6 50 414-463 105-162 (324)
479 1oxx_K GLCV, glucose, ABC tran 87.5 0.14 4.7E-06 60.2 0.9 23 45-67 33-55 (353)
480 2dyk_A GTP-binding protein; GT 87.5 0.27 9.2E-06 50.2 3.1 22 45-66 3-24 (161)
481 3zvl_A Bifunctional polynucleo 87.4 1.8 6.1E-05 52.2 10.7 29 759-787 260-288 (416)
482 2yv5_A YJEQ protein; hydrolase 87.4 0.34 1.2E-05 55.8 4.2 31 33-64 156-186 (302)
483 2w0m_A SSO2452; RECA, SSPF, un 87.4 0.29 9.9E-06 53.8 3.4 27 43-69 23-49 (235)
484 3ake_A Cytidylate kinase; CMP 87.3 0.3 1E-05 52.7 3.4 22 46-67 5-26 (208)
485 2zej_A Dardarin, leucine-rich 87.3 0.25 8.5E-06 52.2 2.7 22 44-65 3-24 (184)
486 2w0m_A SSO2452; RECA, SSPF, un 87.2 0.22 7.4E-06 54.8 2.3 47 414-462 21-69 (235)
487 2if2_A Dephospho-COA kinase; a 87.2 0.41 1.4E-05 51.4 4.4 28 759-787 3-30 (204)
488 1ukz_A Uridylate kinase; trans 87.2 0.42 1.4E-05 51.3 4.5 29 759-787 17-45 (203)
489 3bh0_A DNAB-like replicative h 87.1 0.55 1.9E-05 54.4 5.8 50 413-464 65-116 (315)
490 1p9r_A General secretion pathw 87.1 0.44 1.5E-05 57.3 5.0 29 753-781 163-191 (418)
491 4ag6_A VIRB4 ATPase, type IV s 87.1 0.36 1.2E-05 57.9 4.3 39 42-83 34-72 (392)
492 2ce2_X GTPase HRAS; signaling 87.1 0.28 9.5E-06 50.2 2.9 22 44-65 4-25 (166)
493 3r20_A Cytidylate kinase; stru 87.1 0.4 1.4E-05 52.6 4.2 29 759-787 11-39 (233)
494 3u59_A Tropomyosin beta chain; 87.0 18 0.00063 33.6 15.0 56 1243-1298 9-64 (101)
495 4a74_A DNA repair and recombin 87.0 0.5 1.7E-05 51.7 5.1 28 413-440 22-49 (231)
496 2plr_A DTMP kinase, probable t 87.0 0.21 7.2E-06 54.0 2.0 25 416-440 4-28 (213)
497 1kao_A RAP2A; GTP-binding prot 87.0 0.3 1E-05 50.1 3.1 22 44-65 4-25 (167)
498 1m2o_B GTP-binding protein SAR 86.9 0.31 1.1E-05 51.8 3.2 36 30-65 10-45 (190)
499 1qhl_A Protein (cell division 86.8 0.15 5E-06 55.9 0.6 23 46-68 30-52 (227)
500 2ga8_A Hypothetical 39.9 kDa p 86.8 0.36 1.2E-05 56.1 3.8 29 759-787 26-54 (359)
No 1
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=100.00 E-value=3.6e-285 Score=2953.88 Aligned_cols=1460 Identities=60% Similarity=1.041 Sum_probs=1292.8
Q ss_pred hhHHHHHHHHHHhccCccCCCCCCCchHHHHHHHHHHHHHhccEEEEecCCCCChhhHHHHHHHHHHHhhcCCceEEEeC
Q psy568 2 TGLKEKIKEVCREEFLVCGEGNEEGGPWMEKVLQLYQISNLNHGLMMVGPSGSGKSTAWKVLLKALERYEGVEGVAHIID 81 (1614)
Q Consensus 2 ~~~~~~i~~~~~~~~l~~~~~~~~~~~~~~K~~qL~e~~~~r~gVmlvG~~gsGKTt~~~~L~~al~~~~~~~~~~~~in 81 (1614)
+.|+++|+++|++.||+ +++.|+.||+||||++.+||||||||||||||||||++|++|++++.+.+++.++||
T Consensus 871 ~~l~~ai~~~~~~~~L~------~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~~L~~al~~l~~~~~~~~~iN 944 (3245)
T 3vkg_A 871 DQLRKKIQEIAKQRHLV------TKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWEVYLEAIEQVDNIKSEAHVMD 944 (3245)
T ss_dssp HHHHHHHHHHHHHTTCC------CCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHHHHHHHHTTTTTCEEEEEEEC
T ss_pred HHHHHHHHHHHHHcCCc------cCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHHHHHHHHHHhhCCCceEEEEC
Confidence 46899999999999876 678999999999999999999999999999999999999999999988788899999
Q ss_pred CCCCCcCcccccccCCCCccccchHHHHHHHHHhhhcCCCCCceEEEEccCCChhhhhhhhhhhcCCCccccCCCceeeC
Q psy568 82 PKAISKEALYGVLDPNTREWTDGLFTHILRRIIDNVRGEISKRQWIIFDGDVDPEWVENLNSVLDDNKLLTLPNGERLSL 161 (1614)
Q Consensus 82 Pkais~~eLyG~~d~~t~eW~DGvls~i~r~~~~~~~~~~~~~~WivfDG~vd~~WiE~lnsvLDdnk~L~L~nGeri~l 161 (1614)
|||||++||||++||+|+||+||||++++|+++++.+++..+++||||||||||.|||||||||||||+|||+|||||+|
T Consensus 945 PKait~~eLyG~~d~~T~EW~DGvls~i~R~~~~~~~~~~~~~~WIvfDGpVDa~WIEnlNsVLDDNK~LtL~nGErI~l 1024 (3245)
T 3vkg_A 945 PKAITKDQLFGSLDLTTREWTDGLFTATLRRIIDNVRGESTKRHWIIFDGDVDPEWVENLNSLLDDNKLLTLPNGERLAL 1024 (3245)
T ss_dssp TTTSCHHHHHEEECTTTCCEEECHHHHHHHHHHTTSSSGGGEEEEEEEESCCCHHHHTTTHHHHSSSCEECCTTSCCEEC
T ss_pred CCCCchhhhceeecCCCCeeeccHHHHHHHHHHhcccCCCCCceEEEECCCCCHHHHHHHHHHhcCCCeeecCCCCeeec
Confidence 99999999999999999999999999999999876556667799999999999999999999999999999999999999
Q ss_pred CCCceEEEEeccccccCccccccceeEEecCcccchHHHHHHHHHhhhccccCCcccchh-------------hhHhhcc
Q psy568 162 PPNIRIMFEVQDLKYATLATVSRCGMIWFSEDVLSTEMIFENYLSRLRNIALDDIDDDSS-------------LLITVDA 228 (1614)
Q Consensus 162 ~~~~~~iFEv~dL~~ASPAtVSRcgmv~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~ 228 (1614)
||+|+|||||+||++||||||||||||||+++++||+|++++|+.+++..+......+.. ..+....
T Consensus 1025 ~~~~~liFEv~dL~~ASPATVSRcGmVy~~~~~l~~~~~~~swl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 1104 (3245)
T 3vkg_A 1025 PNNVRVMFEVQDLKYATLATISRCGMVWFSEEILTTQMIFQNYLDTLSNEPFDPQEKEQQKRNENAQLQQQQQTTITSPI 1104 (3245)
T ss_dssp CTTEEEEEEESCCTTCCHHHHHTSEEEECCTTSSCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHTC--------------
T ss_pred CCCCEEEEEeccccccChhhheeeeEEEEcccccCchHHHHHHHHhCccccccchhhhhhcccccchhhhcccccccccc
Confidence 999999999999999999999999999999999999999999999876543321110000 0000000
Q ss_pred ------------CCCCCCcccchhHHHHHHHHHHhhhccCCcchHHHHHHHhhhcccccccchHHHHHHHHHHHHHHhhh
Q psy568 229 ------------TGKAPDDVLSPALTLQQDVASILSTHFAPDGLVVRALDYAMQQEHIMDFTRLRALGSLFSMLNQGVRN 296 (1614)
Q Consensus 229 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 296 (1614)
..........|....+..+..++..+|..++++..+++++....++++.+..+++.++++++...+.+
T Consensus 1105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~l~~~~~~~~i~~~~~~~~v~~l~~ll~~~~~~ 1184 (3245)
T 3vkg_A 1105 LTSPPTTSSSSRSTTSTTSMIPAGLKVQKECAAIISQYFEPGGLVHKVLEDAGQRPHIMDFTRLRVLNSFFSLMNRSIVN 1184 (3245)
T ss_dssp --------------------CCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHTSCCSSCCCHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccchhHHHHHHHHHHHHHHhcccccHHHHHHHHHhcCcccCccHHHHHHHHHHHHHHHhhh
Confidence 00001122334445555666777777766788999999998888899999999999999999887766
Q ss_pred hhhcCCCCCCCCCChHHHHhHHHHHHHHHHhhhcccCCCccchHHHHHHHhhhccccCCCCCCCeeEEEEecCCCceeec
Q psy568 297 VLQYNHSHSDFPLSQDVVERYIPRILVYSLLWSFAGDGKLKMRSDFGNFLRSVTTITLPATSSDIVDFEVNIKNGEWVPW 376 (1614)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~f~fa~~Ws~gg~l~~~~r~~f~~~l~~~~~~~~p~~~~~v~d~~~~~~~~~~~~w 376 (1614)
...++..+.+.+.+.+.++.+++.+|+||++|||||+++.++|..|+.|+++...+++|+.++++||||+|++++.|.+|
T Consensus 1185 ~~~~~~~~~~~~~~~~~~~~~~~~~f~faliWs~Gg~l~~~~R~~F~~~~~~~~~~~~p~~~~~v~Dy~~~~~~~~w~~W 1264 (3245)
T 3vkg_A 1185 VIEYNQLHSDFPMSPENQSNYITNRLLYSLMWGLGGSMGLVERENFSKFIQTIAITPVPANTIPLLDYSVSIDDANWSLW 1264 (3245)
T ss_dssp HHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHTTCSSCCCCTTSCGGGEEECTTTCSEEET
T ss_pred hcccccccccCCCCHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEECCCCeeeeh
Confidence 55444334445566778888999999999999999999999999999999999888888777899999999999999999
Q ss_pred CCCCccccccccccCCcceeeeCcchhhHHHHHHHHHhcCCCEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCCH
Q psy568 377 SNKVPQIEVETQKVAASDVVVPTLDTVRHESLLYTWLAEHKPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTP 456 (1614)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~vpT~~t~r~~~ll~~~l~~~~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~~ 456 (1614)
.+.+|.+.+++..+++.+++|||+||+|+.+++..++..++||||+||||||||+++.++++.+++..++.+|||++|++
T Consensus 1265 ~~~v~~~~~~~~~~~~~~ilVPT~DTvR~~~ll~~ll~~~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tta 1344 (3245)
T 3vkg_A 1265 KNKVPSVEVETHKVASPDVVIPTVDTTRHVDVLHAWLSEHRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATTP 1344 (3245)
T ss_dssp TCCC---CCCSTTTTCTTCCCCCHHHHHHHHHHHHHHHTTCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCCH
T ss_pred hhcCCccccCCccCCcccceecchHHHHHHHHHHHHHHCCCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCCH
Confidence 99999998877767889999999999999999999999999999999999999999999999988888899999999999
Q ss_pred HHHHhHhhcccceeecCC-ccccccccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeE
Q psy568 457 ELLLKTFDHYCEYRKTPN-GVILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQ 535 (1614)
Q Consensus 457 ~~l~~~~~~~~~~~~~~~-g~~~~p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~ 535 (1614)
..+++.+++.++++.+++ |++++|++.|+++|+||||||||.+|+||+|+++|+|||++|+||||++.++.|+.+++++
T Consensus 1345 ~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~VlFiDDiNmp~~D~yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~ 1424 (3245)
T 3vkg_A 1345 ELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLVVFCDEINLPSTDKYGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQ 1424 (3245)
T ss_dssp HHHHHHHHHHEEEEECTTSCEEEEESSTTCEEEEEETTTTCCCCCTTSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEE
T ss_pred HHHHHHHhhcceEEeccCCCcccCCCcCCceEEEEecccCCCCccccccccHHHHHHHHHHcCCeEECCCCeEEEecCeE
Confidence 999999999999887666 9999998779999999999999999999999999999999999999999889999999999
Q ss_pred EEEeecCCCCCCCCCCcccccccccEEEecCCChhHHHHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHHHhhcCCC
Q psy568 536 CVGACNPPTDPGRKPLSHRFLRHVPVIYVDYPGETSLKQIYGTFSRAMLRLIPPLRGYADALTNAMVELYLASQEKFTQD 615 (1614)
Q Consensus 536 ~iaa~n~~~~~g~~~l~~r~~r~f~~i~i~~p~~~~l~~I~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 615 (1614)
||||||||+++||+++++||+|||.++++++|+.+++..||++++..++.+.+.+..++..++++++++|..++..|+|+
T Consensus 1425 ~vaamnPp~~gGr~~l~~Rf~r~F~vi~i~~ps~esL~~If~til~~~l~~~p~l~~~~~~lv~ati~ly~~v~~~~lp~ 1504 (3245)
T 3vkg_A 1425 FVGACNPPTDAGRVQLTHRFLRHAPILLVDFPSTSSLTQIYGTFNRALMKLLPNLRSFADNLTDAMVEFYSESQKRFTPD 1504 (3245)
T ss_dssp EEEEECCTTSTTCCCCCHHHHTTCCEEECCCCCHHHHHHHHHHHHHHHTTSCGGGTTSHHHHHHHHHHHHHHHHHHSCTT
T ss_pred EEEEcCCCCCCCCccCCHHHHhhceEEEeCCCCHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999878999999999999999999999999999999999999988889999999999999999999999999989
Q ss_pred CCCccccChhhHHHHhhhhhcccCCCccCCHHHHHHHHHHhhhhhhcccCCChhHHHHHHHHHHHHHHhhcCCcchhhcc
Q psy568 616 MQPHYVYSPREMTRWVRGICEAIRPLESLTVEGLVRLWAHEALRLFQDRLVNDVERQWTNENIDAVAMKYFSNIDKEVLA 695 (1614)
Q Consensus 616 ~~~hY~F~lRdl~~v~~~i~~~~~~~~~~~~~~l~~lw~hE~~Rvf~DRL~~~~d~~~~~~~l~~~~~~~f~~~~~~~~~ 695 (1614)
.++||.||||||+||++|++++..+....+.+.+++||+|||.|||+|||++++||.||.+.+.+++.++|+..+.....
T Consensus 1505 ~k~HY~FnLRDLsrv~qGll~~~~~~~~~~~~~lvrLW~HE~~RVF~DRLv~~~Dr~~f~~~l~~~~~~~F~~~~~~~~~ 1584 (3245)
T 3vkg_A 1505 IQAHYIYSPRELSRWDRALLEAIQTMDGCTLEGLVRLWAHEALRLFQDRLVETEEKEWTDKKIDEVALKHFPSVNLDALK 1584 (3245)
T ss_dssp TSTTCCCCHHHHHHHHHHHHHHHHTSSCCCTTHHHHHHHHHHHHHHTTTCSSHHHHHHHHHHHHHHHHHHCTTSCGGGGC
T ss_pred cCCCccccHHHHHHHHHHHHHhcCccccCCHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCcchhhhcc
Confidence 99999999999999999999875565666889999999999999999999999999999999999999999876655667
Q ss_pred cCceeccCCcCCCcccChhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHHhccCCccEEEeecCCCChHHHHH
Q psy568 696 RPILYSNWLSKNYVPVGTTELREYVQARLKVFYEEELDVQLVLFDEVLDHVLRIDRIFRQPQGHLLLIGVSGAGKTTLSR 775 (1614)
Q Consensus 696 ~~~~~~~~~~~~~~~v~~~~l~~~~~~~l~~~~~~~~~~~lvlf~~~i~hi~ri~Ril~~p~gh~LLvG~~GsGKtsl~r 775 (1614)
.|++|++|+...|.+++.+++++++..++..|+++...|+||+|++|++|++||+|||++|+||+||||++||||+||+|
T Consensus 1585 ~pllf~~f~~~~Y~~v~~~~l~~~l~~~L~~yn~~~~~m~LVlF~daleHv~RI~RIL~qp~GhaLLVGvgGSGkqSLtr 1664 (3245)
T 3vkg_A 1585 RPILYSNWLTKDYQPVNRSDLREYVKARLKVFYEEELDVPLVLFNEVLDHILRIDRVFRQPQGHALLIGVSGGGKSVLSR 1664 (3245)
T ss_dssp SSCCCCSSCC----CCCHHHHHHHHHHHHHTTC------CCCCCHHHHHHHHHHHHHHTSTTCCEEEEESTTSSHHHHHH
T ss_pred cCcchhhhccccCccCCHHHHHHHHHHHHHHHHhcccCceEEeHHHHHHHHHHHHHHHccCCCCeEEecCCCCcHHHHHH
Confidence 89999999999999999999999999999999988889999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCeEEEEEecCCCChhcHHHHHHHHHHHhccCCCcEEEEEcCCcccccchHHHHHHhhccCCCCCCCChhhHHH
Q psy568 776 FVAFMNGLSVFQIRAHNKYTGADFDEDLRTVLRRSGCKNEKIAFLLDESNVLESGFLERMNTLLANGEIPGLFEGDEYTT 855 (1614)
Q Consensus 776 laA~~~~~~~~~i~~~~~~~~~df~~~lk~~l~~ag~~~~~~v~ll~d~~i~~~~~le~in~lL~~G~v~~Lf~~eE~~~ 855 (1614)
||||++|+++|+|+++++|+..||++|||.++++||++|+++||+++|+||++++|||+||+||++|||||||+.||++.
T Consensus 1665 LAa~i~~~~vfqi~i~k~Y~~~~f~eDLk~l~~~aG~~~~~~vFL~tD~qi~~e~FLE~IN~lL~sGEVP~LF~~dE~~~ 1744 (3245)
T 3vkg_A 1665 FVAWMNGLSIYTIKVNNNYKSSDFDDDLRMLLKRAGCKEEKICFIFDESNVLESSFLERMNTLLAGGEVPGLFEGEEFTA 1744 (3245)
T ss_dssp HHHHHTTCEEECCC----CCHHHHHHHHHHHHHHHHTSCCCEEEEEEGGGCSSTHHHHHHHHHHHHSCCTTSSCTTTHHH
T ss_pred HHHHHhCCeeEEEeeeCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEeccccccHHHHHHHHHHhccCCccccCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHHHHHHcCCCCCCHHHHHHHHHHHHhhcceEEEEECCCChhhHHHhhhCccccccceecccCCCcHHHHHHHHHH
Q psy568 856 LMTQCKEGAQREGLMLDSNEELYKWFTQQVMKNLHVVFTMNPSSEGLKDRAATSPALFNRCVLNWFGDWSDTALYQVAKE 935 (1614)
Q Consensus 856 i~~~~~~~~~~~~~~~~s~~~l~~~f~~rv~~nlhivl~~sp~~~~~r~~~~~~PaL~~~~~i~wf~~W~~eaL~~va~~ 935 (1614)
|++.+|+.+++.|...+|++++|+||++|||+||||||||||+|+.||.|+|+||||+||||||||++||+|||.+||++
T Consensus 1745 i~~~~r~~a~~~g~~~dt~~~l~~~Fi~rvr~NLHvVL~mSPvg~~fR~R~r~fPaLvncctIDWf~~Wp~eAL~~Va~~ 1824 (3245)
T 3vkg_A 1745 LMHACKETAQRNGLILDSEEELYKYFTSQVRRNLHVVFTMNPASPDFHNRSATSPALFNRCVLDWFGEWSPEALFQVGSE 1824 (3245)
T ss_dssp HHHHHHHHHHHTTCCCCCHHHHHHHHHHHHTTTCCEEEEECTTSTTTTC----CTHHHHHSEEEEEESCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCEEEEEECCCCHHHHHHHHHChHHhhCceeeecCCCCHHHHHHHHHH
Confidence 99999999999997678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccCCCCCCCCCCCCCCcccc-----cccCCCcchhHHHHHHHHHHHhcHHHHHHHHHHhcCCccccCchhHHHHHHH
Q psy568 936 FTSKIDLDGPQNWKAPDFFPSVC-----SLVSTTPSHRDSVINACVYVHQTLHKANARLSKRGSRTMAITPRHYLDFINH 1010 (1614)
Q Consensus 936 ~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~r~~~~tp~~yl~~l~~ 1010 (1614)
|+++++++.+. +..|...|..+ ......+..+++++++|+++|.++.+++.+|+++.+|++|+||++|++||++
T Consensus 1825 fl~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iH~sv~~~s~~~~~~~~R~~yvTP~syLeli~~ 1903 (3245)
T 3vkg_A 1825 FTRNLDLENPQ-YIAPPVFIQEAEIMGNNLMAIPPSHRDAVVSSLVYIHQTIGEANIRLLKRQGRQNYVTPRHYLDFINQ 1903 (3245)
T ss_dssp HTTTSCCCCTT-CCCCHHHHHHHHC----CCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCCCCHHHHHHHHHH
T ss_pred HHhhccccccc-ccccccccchhccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccCCHHHHHHHHHH
Confidence 99998775431 11111111110 0112345678999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy568 1011 FVKLYREKCSELEEQQLHLNVGLGKIAETVEQVEEMQKSLAVKSQELQSKNEAANLKLKEMIKDQQEAEKRKVQSQDIQA 1090 (1614)
Q Consensus 1011 f~~l~~~k~~~~~~~~~~l~~gL~kl~~~~~~v~~l~~~L~~~~~~l~~~~~~~~~~l~~i~~~~~~~e~~~~~~~~~~~ 1090 (1614)
|+.+|.+|+.++..+++||++||+||.+|.++|++|+.+|..++++|++++++++++|++|.+++++|++++..+++.++
T Consensus 1904 y~~ll~~K~~el~~~~~rl~~GL~KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~~~~ae~~k~~v~~~~~ 1983 (3245)
T 3vkg_A 1904 VVLLINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDARELQV 1983 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhHHHhhcCCCCcHHHHHHHHHHHHhcCCCCCCHHHHHHHh
Q psy568 1091 EIEKQTVEIAQKRVFVMEDLAQVEPAVMDAQQAVKEIKKQQLVELRSMANPPSVVKLALESICLLLGENATDWKAIRAVV 1170 (1614)
Q Consensus 1091 ~~~~~~~~~~~~k~~~~~~l~~a~p~l~~A~~al~~l~~~dl~Eirs~~~PP~~V~~v~eavc~Llg~~~~~W~~~k~~l 1170 (1614)
+++++.++++.++++|++||++|+|+
T Consensus 1984 ~~~~~~~ei~~~k~~~e~dL~~A~Pa------------------------------------------------------ 2009 (3245)
T 3vkg_A 1984 QLDVRNKEIAVQKVKAYADLEKAEPT------------------------------------------------------ 2009 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHCC------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCC------------------------------------------------------
Confidence 99999999999999999999999999
Q ss_pred chhhhHHHHHhhcCCCCCcHHHHHHHHhhhcCCCCCCHHHHHhhhhchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q psy568 1171 MRENFINSIVSNFNTEMITDEVREKMHSRYLSNPDYSYEKANRASMACGPMVKWAIAQISYADMLKKVEPLRLELKSLEV 1250 (1614)
Q Consensus 1171 ~~~~F~~~l~~~~d~~~i~~~~~~~l~~~~~~~~~f~~~~~~~~S~aa~~L~~Wv~Ai~~y~~v~~~v~P~~~~l~~~~~ 1250 (1614)
+||+++++++++
T Consensus 2010 --------------------------------------------------------------------~Pkr~~l~~ae~ 2021 (3245)
T 3vkg_A 2010 --------------------------------------------------------------------GPLREEVEQLEN 2021 (3245)
T ss_dssp ---------------------------------------------------------------------CHHHHHHHHHH
T ss_pred --------------------------------------------------------------------ChHHHHHHHHHH
Confidence 999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy568 1251 QASENKAKGEETKDLITQLEKSIASYKDEYAQLIAQATAIKTDLDNVQAKFYEYAQLIAQATAIKTDLDNVQAKVERSMA 1330 (1614)
Q Consensus 1251 ~~~~~~~~l~~~~~~l~~~e~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~rl~~a~~ 1330 (1614)
+++.++++|++++++|++++++++.|+++|++++++++++ +.+++.|+.||+||++
T Consensus 2022 ~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L------------------------~~e~~~~~~kl~rA~~ 2077 (3245)
T 3vkg_A 2022 AANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQI------------------------KTESSKVKNKVDRSIA 2077 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988888877 7788899999999999
Q ss_pred HHHhhhhhhhhHHHHHHHHHHhhhhchhHHHHHHHHHHhhcccCHHhHHHHHHHHHHHHHhccCCCCCCCchhcccCCHH
Q psy568 1331 LLKSLGIERERWEATSETFRSQMATIIGDVLLSSAYLAYAGYFDQHYRQSLFSTWNSHLIAAGIQFRPEIALTEYLSSPD 1410 (1614)
Q Consensus 1331 l~~~L~~e~~rW~~~~~~~~~~~~~l~gd~ll~aa~i~Y~G~f~~~~R~~l~~~w~~~l~~~~I~~~~~~~~~~~l~~~~ 1410 (1614)
|+++|++|+.||++++++++.+.++++|||||||||++|+|||+.+||+.+++.|...|++.+||++++|++.++|+++.
T Consensus 2078 Li~gL~~Ek~RW~~~~~~l~~~~~~L~GD~LLaaafisY~G~f~~~~R~~l~~~W~~~l~~~~Ip~s~~~~l~~~L~~~~ 2157 (3245)
T 3vkg_A 2078 LLDNLNSERGRWEQQSENFNTQMSTVVGDVVLASAFLAYIGFFDQNFRTDLMRKWMIRLDSVGIKFKSDLSVPSFLSKPE 2157 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHTCCCCTTCCHHHHTSCHH
T ss_pred HHHhhhhccccHHHHHHHHHHHHHhccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHcCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhcCCCCChhhHHHHHHHhhcCCcccccCCchHHHHHHHHhhccCCeEEeccCChhHHHHHHHHHHcCCcEEEee
Q psy568 1411 ERLRWQGNALPSDHLCTENAIMLRRFNRYPLIIDPSGQATEFILKEFESRKITKTSFLDDAFRKNLESALRFGNPLLVQD 1490 (1614)
Q Consensus 1411 ~~~~w~~~gLp~d~~s~eNaii~~~~~r~PLliDPq~qa~~wlk~~~~~~~~~v~s~~~~~~~~~le~ai~~G~~lli~d 1490 (1614)
++++|+.+|||+|++|+|||||++++.||||||||||||.+|||++++++++.|++++|++|+++||+||++|+||||||
T Consensus 2158 ~i~~W~~~GLP~D~lSiENaiiv~~~~R~PLlIDPq~Qa~~WIk~~~~~~~l~v~~~~d~~f~~~LE~ai~fG~pvLien 2237 (3245)
T 3vkg_A 2158 ERLNWHANSLPSDELCIENAIMLKRFNRYPLVIDPSGQAMEFLMNQYADKKITKTSFLDSSFMKNLESALRFGCPLLVQD 2237 (3245)
T ss_dssp HHHHHHHTTCCSSHHHHHHHHHTTSCSSCEEEECTTSHHHHHHHHHTGGGCCCCCCC-----HHHHHHHHHHTCCEECCC
T ss_pred HHHHHHhCCCCCCchhhhHHHHHhcCCCceEEEChHHHHHHHHHHHhccCCceEeecCchhHHHHHHHHHHcCCeEEEcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCcchhhhhhhhhccCCeEEEEeCCcccccCCCceEEEeeCCCCCCCCcccccceEEEEEeeChhhHHHHHHHHHH
Q psy568 1491 VENYDTILNPVLNRELRRTGGRVLITLGDQDIDISPTFVIFLSTRDPTVEFPPDICSRVTFVNFTVTRSSLQSQCLNRVL 1570 (1614)
Q Consensus 1491 ve~~dp~l~~vl~~~~~~~~~~~~i~ig~~~i~~~~~F~l~l~T~~~~p~~~p~~~~~~tvinf~vt~~gLe~qlL~~vv 1570 (1614)
||++||+|+|||.|++++.||+.+|++||++|+|||+|||||+||++||||+||++++||+||||||++|||+|||+.||
T Consensus 2238 vE~lDP~L~pvL~k~~~k~gg~~~I~lGdk~idy~~~FrlyltTkl~np~y~Pev~~kvtlINFtvT~~GLedQLL~~vv 2317 (3245)
T 3vkg_A 2238 VENIDPVLNPVLNKEIRKKGGRILIRLGDQDVDFSPSFMIFLFTRDPTAHFTPDLCSRVTFVNFTVTPSSLQSQCLHEAL 2317 (3245)
T ss_dssp CC----------------------------------CCCEEEEECCTTCCCCHHHHHTSEEEECCCCHHHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHHHhcCceEEEEECCeeEecCCCceEEEEecCCCCCCCHHHHhheEEEEEEecHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCC
Q psy568 1571 KAERPDIDTKRSDLLKLQGEFHLRLRHLEKSLLGALNESKGKLL 1614 (1614)
Q Consensus 1571 ~~e~p~le~~~~~l~~~~~~~~~~l~~le~~lL~~L~~~~g~il 1614 (1614)
.+|+||||++|++|+++.+++|++|++|||+||+.|++|+||||
T Consensus 2318 ~~ErPeLE~~r~~Li~~~~~~k~~L~~LEd~lL~~Ls~s~GniL 2361 (3245)
T 3vkg_A 2318 KTERPDTHKKRSDLLKIQGEFQVKLRILEKSLLNALSQASGNIL 2361 (3245)
T ss_dssp HHHCHHHHHHHHHHHHTTHHHHHHHHTTTHHHHHHHHTTSSCGG
T ss_pred HHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence 99999999999999999999999999999999999999999997
No 2
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=100.00 E-value=2.5e-242 Score=2525.33 Aligned_cols=1289 Identities=36% Similarity=0.674 Sum_probs=1160.6
Q ss_pred hhHHHHHHHHHHhccCccCCCCCCCchHHHHHHHHHHHHHhccEEEEecCCCCChhhHHHHHHHHHHHhhcCCceEEEeC
Q psy568 2 TGLKEKIKEVCREEFLVCGEGNEEGGPWMEKVLQLYQISNLNHGLMMVGPSGSGKSTAWKVLLKALERYEGVEGVAHIID 81 (1614)
Q Consensus 2 ~~~~~~i~~~~~~~~l~~~~~~~~~~~~~~K~~qL~e~~~~r~gVmlvG~~gsGKTt~~~~L~~al~~~~~~~~~~~~in 81 (1614)
..++++|+++|++.+|+ +.+.|+.||+||||++.+||||||||||||||||+|++|++|++++.+.+.+.++||
T Consensus 888 ~~l~~~i~~~~~~~~l~------~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~~La~al~~l~~~~~~~~~in 961 (2695)
T 4akg_A 888 KAIVQCLKDAGQRSGFS------MSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWKTVIDAMAIFDGHANVVYVID 961 (2695)
T ss_dssp SHHHHHHHHHHHHHTCC------CCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEEEEC
T ss_pred HHHHHHHHHHHHHcCCc------ccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEeC
Confidence 46889999999999876 578999999999999999999999999999999999999999999988778899999
Q ss_pred CCCCCcCcccccccCCCCccccchHHHHHHHHHhhhcCCC-CCceEEEEccCCChhhhhhhhhhhcCCCccccCCCceee
Q psy568 82 PKAISKEALYGVLDPNTREWTDGLFTHILRRIIDNVRGEI-SKRQWIIFDGDVDPEWVENLNSVLDDNKLLTLPNGERLS 160 (1614)
Q Consensus 82 Pkais~~eLyG~~d~~t~eW~DGvls~i~r~~~~~~~~~~-~~~~WivfDG~vd~~WiE~lnsvLDdnk~L~L~nGeri~ 160 (1614)
||++|++||||.+|++|+||+||+|++++|+++.+..++. +.++||||||||||.|||||||||||||+|||+|||||+
T Consensus 962 pk~~t~~el~G~~d~~t~eW~DGils~~~R~~~~~~~~~~~~~~~WivfDG~vD~~WIE~LNsVLDDNk~L~L~ngErI~ 1041 (2695)
T 4akg_A 962 TKVLTKESLYGSMLKATLEWRDGLFTSILRRVNDDITGTFKNSRIWVVFDSDLDPEYVEAMNSVLDDNKILTLPNGERLP 1041 (2695)
T ss_dssp TTTSCHHHHTTEECTTTCCEECCSHHHHHHHHHTCCCSSCSSEEEEEEECSCCCHHHHHTTHHHHSTTCEEECSSSCEEE
T ss_pred CCCCCHHHhcceecCCCCeEecChHHHHHHHHHhccccccCCCCeEEEECCCCCHHHHHHHHHHhcCCCccccCCCCEEe
Confidence 9999999999999999999999999999999976544332 348999999999999999999999999999999999999
Q ss_pred CCCCceEEEEeccccccCccccccceeEEecCcccchHHHHHHHHHhhhccccCCcccchhhhHhhccCCCCCCcccchh
Q psy568 161 LPPNIRIMFEVQDLKYATLATVSRCGMIWFSEDVLSTEMIFENYLSRLRNIALDDIDDDSSLLITVDATGKAPDDVLSPA 240 (1614)
Q Consensus 161 l~~~~~~iFEv~dL~~ASPAtVSRcgmv~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (1614)
++|+|+|||||+||++|||||||||||||++++++||+|++++|+.+.+...... ...
T Consensus 1042 l~~~~~llFEv~dL~~ASPATVSRcGmvy~~~~~l~~~~~~~~wl~~~~~~~~~~--------------------~~~-- 1099 (2695)
T 4akg_A 1042 IPPNFRILFETDNLDHTTPATITRCGLLWFSTDVCSISSKIDHLLNKSYEALDNK--------------------LSM-- 1099 (2695)
T ss_dssp CCSSCEEEEEESCCTTSCHHHHHHSEEEECCSCSSCHHHHHHHHHHHHHHHHHTT--------------------SCH--
T ss_pred cCCCcEEEEEecccccCCccceeeeeEEEecCCcCChHHHHHHHHHhcchhhhhh--------------------hhh--
Confidence 9999999999999999999999999999999999999999999998754210000 000
Q ss_pred HHHHHHHHHHhhhccCCcchHHHHHHHhhhcccccccchHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCChHHHHhHHHH
Q psy568 241 LTLQQDVASILSTHFAPDGLVVRALDYAMQQEHIMDFTRLRALGSLFSMLNQGVRNVLQYNHSHSDFPLSQDVVERYIPR 320 (1614)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (1614)
.....+...+..++. ...+.....+.....++++.+..+.+.+++.++...+........ ..+...++.+++.
T Consensus 1100 -~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~-----~~~~~~~~~~~~~ 1172 (2695)
T 4akg_A 1100 -FELDKLKDLISDSFD-MASLTNIFTCSNDLVHILGVRTFNKLETAVQLAVHLISSYRQWFQ-----NLDDKSLKDVITL 1172 (2695)
T ss_dssp -HHHHHHHHHHHHHCC-HHHHHHHHHHHHSSCCSSCCCHHHHHHHHHHHHHHHHHHTCGGGT-----SSCHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHcC-HHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHHHHhhhc-----cCCchhHHHHHHH
Confidence 012223333433332 112333344444556788888889999998888777665433221 1245567788999
Q ss_pred HHHHHHhhhcccCCCccchHHHHHHHhhhcc-ccCCCCCCCeeEEEEecCCCceeecCCCCccccccccccCCcceeeeC
Q psy568 321 ILVYSLLWSFAGDGKLKMRSDFGNFLRSVTT-ITLPATSSDIVDFEVNIKNGEWVPWSNKVPQIEVETQKVAASDVVVPT 399 (1614)
Q Consensus 321 ~f~fa~~Ws~gg~l~~~~r~~f~~~l~~~~~-~~~p~~~~~v~d~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~vpT 399 (1614)
+|+||++|||||+++.++|..|+.|+++... ..+|. +++|||+++.++++|.+|.+.+|.+.+++...++.+++|||
T Consensus 1173 ~f~f~~iWs~g~~l~~~~R~~f~~~~~~~~~~~~~p~--~~~~dy~~~~~~~~w~~W~~~v~~~~~~~~~~~~~~iiVpT 1250 (2695)
T 4akg_A 1173 LIKRSLLYALAGDSTGESQRAFIQTINTYFGHDSQEL--SDYSTIVIANDKLSFSSFCSEIPSVSLEAHEVMRPDIVIPT 1250 (2695)
T ss_dssp HHHHHHHHHHHTTSCSHHHHHHHHHHHHHSCSSSCCC--CSSCCCBCCSSSCCCBCCCCCCCCCCCCSGGGSCSSCCCCC
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcccCCCC--CCeeEEEEECCCCceeechhcCCCcccCccccCccceeEec
Confidence 9999999999999999999999999999874 55564 47999999999999999999999998877677889999999
Q ss_pred cchhhHHHHHHHHHhcCCCEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCCHHHHHhHhhcccceeecCCccccc
Q psy568 400 LDTVRHESLLYTWLAEHKPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTPELLLKTFDHYCEYRKTPNGVILS 479 (1614)
Q Consensus 400 ~~t~r~~~ll~~~l~~~~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~~~~l~~~~~~~~~~~~~~~g~~~~ 479 (1614)
+||+|+.+++..++..++||||+||||||||++++++++...+..+..++||+.|++..+++.+++.++++.+++|.+++
T Consensus 1251 ~DT~R~~~ll~~~l~~~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~~~ 1330 (2695)
T 4akg_A 1251 IDTIKHEKIFYDLLNSKRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTTEHILSALHRHTNYVTTSKGLTLL 1330 (2695)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEEEE
T ss_pred cchHHHHHHHHHHHHCCCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCCHHHHHHHHHHHhhhccccCCcccc
Confidence 99999999999999999999999999999999999999988888899999999999999999999988877767798888
Q ss_pred cccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCCCcccccccc
Q psy568 480 PIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLRHV 559 (1614)
Q Consensus 480 p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r~f 559 (1614)
|+..|+++|+||||||||..|+||+|+++|+|||++|+||||++....++.+.++++|||||||+++||+.+++||+|||
T Consensus 1331 P~~~gk~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf 1410 (2695)
T 4akg_A 1331 PKSDIKNLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHA 1410 (2695)
T ss_dssp EBSSSSCEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTE
T ss_pred CCCCCceEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhhee
Confidence 87679999999999999999999999999999999999999998888999999999999999997689999999999999
Q ss_pred cEEEecCCChhHHHHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHHHhhcCCCCCCccccChhhHHHHhhhhhcccC
Q psy568 560 PVIYVDYPGETSLKQIYGTFSRAMLRLIPPLRGYADALTNAMVELYLASQEKFTQDMQPHYVYSPREMTRWVRGICEAIR 639 (1614)
Q Consensus 560 ~~i~i~~p~~~~l~~I~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~hY~F~lRdl~~v~~~i~~~~~ 639 (1614)
++++++.|+.+++..||+.++..++.+.+.+..++..++++++++|..+.+.|+|+.++||.||+|||+||+||++.+..
T Consensus 1411 ~vi~i~~P~~~~l~~I~~~il~~~l~~~~~v~~~~~~lv~ati~~y~~v~~~~~~~~k~HY~FnlRDLsrv~qGll~~~~ 1490 (2695)
T 4akg_A 1411 AILYLGYPSGKSLSQIYEIYYKAIFKLVPEFRSYTEPFARASVHLYNECKARYSTGLQSHYLFSPRELTRLVRGVYTAIN 1490 (2695)
T ss_dssp EEEECCCCTTTHHHHHHHHHHHHHTTSSGGGGGGHHHHHHHHHHHHHHHHHHSCTTTCTTCCCCHHHHHHHHHHHHHHHH
T ss_pred eEEEeCCCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCcccCHHHHHHHHHHHHhcCc
Confidence 99999999999999999999999988888899999999999999999999999999999999999999999999998755
Q ss_pred CCccCCHHHHHHHHHHhhhhhhcccCCChhHHHHHHHHHHHHHHhhcCCcchh-hcccCceeccCCcCCCcccChhHHHH
Q psy568 640 PLESLTVEGLVRLWAHEALRLFQDRLVNDVERQWTNENIDAVAMKYFSNIDKE-VLARPILYSNWLSKNYVPVGTTELRE 718 (1614)
Q Consensus 640 ~~~~~~~~~l~~lw~hE~~Rvf~DRL~~~~d~~~~~~~l~~~~~~~f~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~l~~ 718 (1614)
+....+.+.+++||+|||.|||+|||++++||.||.+.+.+++.++|+..... ....|++|++|++..|.+++.+++++
T Consensus 1491 ~~~~~~~~~l~rLw~HE~~Rvf~DRLv~~~D~~~f~~~l~~~~~~~f~~~~~~~~~~~~~~f~df~~~~Y~~v~~~~l~~ 1570 (2695)
T 4akg_A 1491 TGPRQTLRSLIRLWAYEAWRIFADRLVGVKEKNSFEQLLYETVDKYLPNQDLGNISSTSLLFSGLLSLDFKEVNKTDLVN 1570 (2695)
T ss_dssp TSSCCCHHHHHHHHHHHHHHHHTTTCCSSHHHHHHHHHHHHHHHHHSCCSCCCCCSTTTCCEESSSSSSCEECCHHHHHH
T ss_pred hhhhccHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcccchhhhccCCceeeecCCCcceecCHHHHHH
Confidence 55567889999999999999999999999999999999999999999764433 34678999999999999999999999
Q ss_pred HHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHHhccCCccEEEeecCCCChHHHHHHHHHHcCCeEEEEEecCCCChhc
Q psy568 719 YVQARLKVFYEEELDVQLVLFDEVLDHVLRIDRIFRQPQGHLLLIGVSGAGKTTLSRFVAFMNGLSVFQIRAHNKYTGAD 798 (1614)
Q Consensus 719 ~~~~~l~~~~~~~~~~~lvlf~~~i~hi~ri~Ril~~p~gh~LLvG~~GsGKtsl~rlaA~~~~~~~~~i~~~~~~~~~d 798 (1614)
.+.+++..|+++...|++|+|++|++|++||+|+|++|+||+||||++||||+||+|||||++|+++++|+++++|+.+|
T Consensus 1571 ~l~~~l~~yn~~~~~m~LVlF~dai~Hi~RI~Ril~~p~G~~LLvGvgGsGkqSltrLaa~i~~~~~fqi~~~~~Y~~~~ 1650 (2695)
T 4akg_A 1571 FIEERFKTFCDEELEVPMVIHESMVDHILRIDRALKQVQGHMMLIGASRTGKTILTRFVAWLNGLKIVQPKIHRHSNLSD 1650 (2695)
T ss_dssp HHHHHHHHHHHHSCCCCCCCCHHHHHHHHHHHHHHHSSSEEEEEECTTTSCHHHHHHHHHHHTTCEEECCCCCTTCCHHH
T ss_pred HHHHHHHHHHhhcCCceeeeHHHHHHHHHHHHHHHcCCCCCEEEECCCCCcHHHHHHHHHHHhCCeeEEEEeeCCCCHHH
Confidence 99999999999889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCcEEEEEcCCcccccchHHHHHHhhccCCCCCCCChhhHHHHHHHhHHHHHHcCCCCCCHHHHH
Q psy568 799 FDEDLRTVLRRSGCKNEKIAFLLDESNVLESGFLERMNTLLANGEIPGLFEGDEYTTLMTQCKEGAQREGLMLDSNEELY 878 (1614)
Q Consensus 799 f~~~lk~~l~~ag~~~~~~v~ll~d~~i~~~~~le~in~lL~~G~v~~Lf~~eE~~~i~~~~~~~~~~~~~~~~s~~~l~ 878 (1614)
|++|||.++++||++|+++||+++|+||++++|||+||+||++|||||||+.||++.|++.+|+.+++.|...+|++++|
T Consensus 1651 f~eDLk~l~~~aG~~~~~~vFL~tD~qi~~e~FLE~IN~lL~sGEVP~LF~~dE~~~i~~~~r~~~~~~g~~~~t~~~l~ 1730 (2695)
T 4akg_A 1651 FDMILKKAISDCSLKESRTCLIIDESNILETAFLERMNTLLANADIPDLFQGEEYDKLLNNLRNKTRSLGLLLDTEQELY 1730 (2695)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEEEETTTCCSHHHHHHHHHHHHSSSCTTTSCTHHHHHHHHHHHHHHHHHTCCCCSHHHHH
T ss_pred HHHHHHHHHHHcCCCCCceEEEEeccccccHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHhHHHHHhcCCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998678999999
Q ss_pred HHHHHHHhhcceEEEEECCCChhhHHHhhhCccccccceecccCCCcHHHHHHHHHHhhcccCCCCCCCCCCCCCCcccc
Q psy568 879 KWFTQQVMKNLHVVFTMNPSSEGLKDRAATSPALFNRCVLNWFGDWSDTALYQVAKEFTSKIDLDGPQNWKAPDFFPSVC 958 (1614)
Q Consensus 879 ~~f~~rv~~nlhivl~~sp~~~~~r~~~~~~PaL~~~~~i~wf~~W~~eaL~~va~~~l~~~~~~~~~~~~~~~~~~~~~ 958 (1614)
+||++|||+||||||||||+|+.||.|+|+||||+||||||||++||+|||.+||++|+++++++.. .+..|.......
T Consensus 1731 ~~Fi~rvr~NLHvVL~mSP~g~~fr~R~r~fPaLvn~ctIdWf~~Wp~eAL~~Va~~fl~~~~~~~~-~y~tp~s~le~~ 1809 (2695)
T 4akg_A 1731 DWFVGEIAKNLHVVFTICDPTNNKSSAMISSPALFNRCIINWMGDWDTKTMSQVANNMVDVIPMEFT-DFIVPEVNKELV 1809 (2695)
T ss_dssp HHHHHHHHHHCEEEEEESCTTSHHHHHHHHSHHHHHHSEEEECCSCCHHHHHHHHHHHSCSCCCCCC-CC----------
T ss_pred HHHHHHHHHcCEEEEEECCCChHHHHHHHhChHhhcceeEeecCCCCHHHHHHHHHHHhhccCcccc-cccCchHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999998876543 222222111110
Q ss_pred cccCCCcchhHHHHHHHHHHHhcHHHHHHHHHHhcCCc-cccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy568 959 SLVSTTPSHRDSVINACVYVHQTLHKANARLSKRGSRT-MAITPRHYLDFINHFVKLYREKCSELEEQQLHLNVGLGKIA 1037 (1614)
Q Consensus 959 ~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~r~-~~~tp~~yl~~l~~f~~l~~~k~~~~~~~~~~l~~gL~kl~ 1037 (1614)
. .......++.+++.|+.+|. .+.+..+|. +++||.+|+++++.|..++.+|+.+++.+.+++..|++||.
T Consensus 1810 ~-~~~~~~~~~~l~~~l~~~~~-------~~~~~~~~~~~~~~p~~fl~~l~~~~~~~~~k~~~l~~~~~~l~~~l~kL~ 1881 (2695)
T 4akg_A 1810 F-TEPIQTIRDAVVNILIHFDR-------NFYQKMKVGVNPRSPGYFIDGLRALVKLVTAKYQDLQENQRFVNVGLEKLN 1881 (2695)
T ss_dssp -------CHHHHHHHHHHHHHH-------HHHHHTCCSSSCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred h-hhhhhHHHHHHHHHHHHHHH-------HHHHHhhhcccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 01124567889999999997 344456665 89999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q psy568 1038 ETVEQVEEMQKSLAVKSQELQSKNEAANLKLKEMIKDQQEAEKRKVQSQDIQAEIEKQTVEIAQKRVFVMEDLAQVEPAV 1117 (1614)
Q Consensus 1038 ~~~~~v~~l~~~L~~~~~~l~~~~~~~~~~l~~i~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~l~~a~p~l 1117 (1614)
++..+|++|+++|+
T Consensus 1882 e~~~~v~~l~~~l~------------------------------------------------------------------ 1895 (2695)
T 4akg_A 1882 ESVLKVNELNKTLS------------------------------------------------------------------ 1895 (2695)
T ss_dssp HHC-----------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHH------------------------------------------------------------------
Confidence 99888888776665
Q ss_pred HHHHHHHHHhhhhhHHHhhcCCCCcHHHHHHHHHHHHhcCCCCCCHHHHHHHhchhhhHHHHHhhcCCCCCcHHHHHHHH
Q psy568 1118 MDAQQAVKEIKKQQLVELRSMANPPSVVKLALESICLLLGENATDWKAIRAVVMRENFINSIVSNFNTEMITDEVREKMH 1197 (1614)
Q Consensus 1118 ~~A~~al~~l~~~dl~Eirs~~~PP~~V~~v~eavc~Llg~~~~~W~~~k~~l~~~~F~~~l~~~~d~~~i~~~~~~~l~ 1197 (1614)
T Consensus 1896 -------------------------------------------------------------------------------- 1895 (2695)
T 4akg_A 1896 -------------------------------------------------------------------------------- 1895 (2695)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhcCCCCCCHHHHHhhhhchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy568 1198 SRYLSNPDYSYEKANRASMACGPMVKWAIAQISYADMLKKVEPLRLELKSLEVQASENKAKGEETKDLITQLEKSIASYK 1277 (1614)
Q Consensus 1198 ~~~~~~~~f~~~~~~~~S~aa~~L~~Wv~Ai~~y~~v~~~v~P~~~~l~~~~~~~~~~~~~l~~~~~~l~~~e~~l~~l~ 1277 (1614)
T Consensus 1896 -------------------------------------------------------------------------------- 1895 (2695)
T 4akg_A 1896 -------------------------------------------------------------------------------- 1895 (2695)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhch
Q psy568 1278 DEYAQLIAQATAIKTDLDNVQAKFYEYAQLIAQATAIKTDLDNVQAKVERSMALLKSLGIERERWEATSETFRSQMATII 1357 (1614)
Q Consensus 1278 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~rl~~a~~l~~~L~~e~~rW~~~~~~~~~~~~~l~ 1357 (1614)
++|+++|++|+.||++++++++.+.++++
T Consensus 1896 ---------------------------------------------------~~Li~~L~~E~~RW~~~~~~~~~~~~~l~ 1924 (2695)
T 4akg_A 1896 ---------------------------------------------------ISLVKSLTFEKERWLNTTKQFSKTSQELI 1924 (2695)
T ss_dssp -------------------------------------------------------CTTHHHHHTTTHHHHHHHHHHHHHH
T ss_pred ---------------------------------------------------HHHHHhhhHHHHHHHHHHHHHHHHHhcch
Confidence 16899999999999999999999999999
Q ss_pred hHHHHHHHHHHhhcccCHHhHHHHHHHHHHHHHhccCCCCCCCchhcccCCHHHHHhhhhcCCCCChhhHHHHHHHhhc-
Q psy568 1358 GDVLLSSAYLAYAGYFDQHYRQSLFSTWNSHLIAAGIQFRPEIALTEYLSSPDERLRWQGNALPSDHLCTENAIMLRRF- 1436 (1614)
Q Consensus 1358 gd~ll~aa~i~Y~G~f~~~~R~~l~~~w~~~l~~~~I~~~~~~~~~~~l~~~~~~~~w~~~gLp~d~~s~eNaii~~~~- 1436 (1614)
|||||||||++|+|||+.+||+.+++.|...|++.+||++++|++.++|+++.++++|+.+|||+|++|+|||+|++++
T Consensus 1925 Gd~ll~aafisY~G~f~~~~R~~l~~~W~~~~~~~~ip~~~~~~~~~~L~~~~~i~~W~~~GLP~D~~s~eNaii~~~s~ 2004 (2695)
T 4akg_A 1925 GNCIISSIYETYFGHLNERERADMLVILKRLLGKFAVKYDVNYRFIDYLVTLDEKMKWLECGLDKNDYFLENMSIVMNSQ 2004 (2695)
T ss_dssp HHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHHTTCCCCSSCCHHHHHCCHHHHHHHHHHTCCSCHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHhcCHHHHHHHHhcCCCCCchhHhHHHHHhccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCcccccCCchHHHHHHHHhhccCCeEEeccCChhHHHHHHHHHHcCCcEEEeeccccCCcchhhhhhhhhccCCeEEEE
Q psy568 1437 NRYPLIIDPSGQATEFILKEFESRKITKTSFLDDAFRKNLESALRFGNPLLVQDVENYDTILNPVLNRELRRTGGRVLIT 1516 (1614)
Q Consensus 1437 ~r~PLliDPq~qa~~wlk~~~~~~~~~v~s~~~~~~~~~le~ai~~G~~lli~dve~~dp~l~~vl~~~~~~~~~~~~i~ 1516 (1614)
.||||||||||||.+|||++++ +++.|++++|++|+++||+||++|+||||||+|++||+|+|||.|+++++||+.+|+
T Consensus 2005 ~r~PL~IDPq~qa~~wik~~~~-~~l~v~~~~d~~f~~~lE~ai~~G~pvLien~E~lDp~L~pvL~k~~~k~gg~~~i~ 2083 (2695)
T 4akg_A 2005 DAVPFLLDPSSHMITVISNYYG-NKTVLLSFLEEGFVKRLENAIRFGSVVIIQDGEFFDPIISRLISREFNHAGNRVTVE 2083 (2695)
T ss_dssp SSEEEEECSSTTHHHHHHHHHG-GGEEEECTTSSTHHHHHHHHHHTTCEEEESCSSSCCSTTHHHHTTCCEECSSCEEEE
T ss_pred ccCceEECcHHHHHHHHHHHhc-CCceEeeCCcHHHHHHHHHHHHcCCeEEEccccccchhHHHHHhhHhhhcCCeEEEE
Confidence 9999999999999999999864 579999999999999999999999999999999999999999999999999999999
Q ss_pred eCCcccccCCCceEEEeeCCCCCCCCcccccceEEEEEeeChhhHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHH
Q psy568 1517 LGDQDIDISPTFVIFLSTRDPTVEFPPDICSRVTFVNFTVTRSSLQSQCLNRVLKAERPDIDTKRSDLLKLQGEFHLRLR 1596 (1614)
Q Consensus 1517 ig~~~i~~~~~F~l~l~T~~~~p~~~p~~~~~~tvinf~vt~~gLe~qlL~~vv~~e~p~le~~~~~l~~~~~~~~~~l~ 1596 (1614)
+||++|+|||+||||||||++||||+||++++||+||||||++|||+|||+.||++|+||||++|++|+++.+++|++|+
T Consensus 2084 lGdk~idy~~~FrlyltTkl~np~y~Pei~~~vt~iNFtvT~~GLedQLL~~vv~~ErPdLE~~r~~Li~~~~~~k~~Lk 2163 (2695)
T 4akg_A 2084 IGDHEVDVSGDFKLFIHSCDPSGDIPIFLRSRVRLVHFVTNKESIETRIFDITLTEENAEMQRKREDLIKLNTEYKLKLK 2163 (2695)
T ss_dssp CSSSEEECCSSCEEEEEECCTTCCCCHHHHHHEEEEECCCCSHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ECCeeEecCCCceEEEeeCCCCCCCCHHHHhheeEEEEEEcHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCcCCCC
Q psy568 1597 HLEKSLLGALNESKGKLL 1614 (1614)
Q Consensus 1597 ~le~~lL~~L~~~~g~il 1614 (1614)
+|||+||+.|++|+||||
T Consensus 2164 ~lEd~lL~~Ls~s~GniL 2181 (2695)
T 4akg_A 2164 NLEKRLLEELNNSQGNML 2181 (2695)
T ss_dssp HHHHHHHHHHHHSSSSCS
T ss_pred HHHHHHHHHHhhCCCCcc
Confidence 999999999999999997
No 3
>2rr7_A Dynein heavy chain 9; microtubule-binding, stalk head, MTBD, antiparallel coil, motor protein, DSH; NMR {Chlamydomonas reinhardtii}
Probab=99.98 E-value=9.8e-34 Score=292.43 Aligned_cols=140 Identities=29% Similarity=0.585 Sum_probs=134.8
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHhhhhhHHHhhcCCCCcHHHHHHHHHHHHhcCCCC-------------CCHHHHHHHhc
Q psy568 1105 FVMEDLAQVEPAVMDAQQAVKEIKKQQLVELRSMANPPSVVKLALESICLLLGENA-------------TDWKAIRAVVM 1171 (1614)
Q Consensus 1105 ~~~~~l~~a~p~l~~A~~al~~l~~~dl~Eirs~~~PP~~V~~v~eavc~Llg~~~-------------~~W~~~k~~l~ 1171 (1614)
+|+++|++|+|+|++|++||++|+++||+|||+|++||++|+.||+|||+|+|.++ ++|+++|++|+
T Consensus 1 ~ae~dL~~A~PaL~~A~~al~~l~k~di~Eiks~~~PP~~V~~vmeaV~iLl~~~~~~~~~~~~g~~~~~~W~~~k~~l~ 80 (155)
T 2rr7_A 1 GSQADLAEALPLLEAALKALDTLKPADITEVKGMKSPPAGVRRVLEAICIMKGVKPARVKDTASGRMVDDYWEASKKMLM 80 (155)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHSSSCCTTHHHHHHHHHTTTTCCCCCEECTTTCSEECCHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHccCCCcHHHHHHHHHHHHHcCCCCcccCCCccccccCCCHHHHHHHhc
Confidence 47899999999999999999999999999999999999999999999999999764 47999999999
Q ss_pred hhhhHHHHHhhcCCCCCcHHHHHHHHhhhcCCCCCCHHHHHhhhhchhHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q psy568 1172 RENFINSIVSNFNTEMITDEVREKMHSRYLSNPDYSYEKANRASMACGPMVKWAIAQISYADMLKKVEPLRLELK 1246 (1614)
Q Consensus 1172 ~~~F~~~l~~~~d~~~i~~~~~~~l~~~~~~~~~f~~~~~~~~S~aa~~L~~Wv~Ai~~y~~v~~~v~P~~~~l~ 1246 (1614)
+++|+++|. +||+++|+++++++++ +|+++|+|+|+.+.++|.||++||.||+||+.|++|+++|+|++++|+
T Consensus 81 ~~~Fl~~L~-~fdkd~I~~~~~~~l~-~yl~~p~f~~e~v~~~S~Aa~~Lc~WV~A~~~y~~v~k~V~Pkr~~l~ 153 (155)
T 2rr7_A 81 EFDFLDSLR-KFDKDHIPPEVIVKIR-PFAQDPEFQPKVIEKQSVACAGLCSWVIALEKYDKVIKEVEPKRQKLR 153 (155)
T ss_dssp CSSHHHHHH-HSCGGGCCHHHHTTST-TTSSCTTSSHHHHHHHCTTTHHHHHHHHHHHHHHHHTTSSSCCCSSSS
T ss_pred hHHHHHHHH-hcCcccChHHHHHHHH-HHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHh
Confidence 999999999 9999999999999998 899999999999999999999999999999999999999999988764
No 4
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A
Probab=99.97 E-value=2.9e-31 Score=326.15 Aligned_cols=174 Identities=63% Similarity=0.962 Sum_probs=163.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhHHHhhcCCCCcHHHHHHHHHHHHhcCCCCCCHHHH
Q psy568 1087 DIQAEIEKQTVEIAQKRVFVMEDLAQVEPAVMDAQQAVKEIKKQQLVELRSMANPPSVVKLALESICLLLGENATDWKAI 1166 (1614)
Q Consensus 1087 ~~~~~~~~~~~~~~~~k~~~~~~l~~a~p~l~~A~~al~~l~~~dl~Eirs~~~PP~~V~~v~eavc~Llg~~~~~W~~~ 1166 (1614)
+++++++++.+++++.+++|+++|++|+|+|++|++||++|+++||+|||+|++||++|+.||+|||+|+|.++++|+++
T Consensus 32 ~~~~~l~~~~~~i~~~k~~~e~dLa~A~PaL~~A~~AL~~L~k~di~Elks~~~PP~~V~~vmeaV~iLl~~~~~~W~~a 111 (536)
T 3err_A 32 AVDEQLHKQQEVIADKQMSVKEDLDKVEPAVIEAQNAVKSIKKQHLVEVRSMANPPAAVKLALESIALLLGESTTDWKQI 111 (536)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHTCSSCCHHHHHHHHHHHHHTTCSCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCCCCCHHHH
Confidence 45667899999999999999999999999999999999999999999999999999999999999999999988899999
Q ss_pred HHHhchhhhHHHHHhhcCCCCCcHHHHHHHHhhhcCCCCCCHHHHHhhhhchhHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q psy568 1167 RAVVMRENFINSIVSNFNTEMITDEVREKMHSRYLSNPDYSYEKANRASMACGPMVKWAIAQISYADMLKKVEPLRLELK 1246 (1614)
Q Consensus 1167 k~~l~~~~F~~~l~~~~d~~~i~~~~~~~l~~~~~~~~~f~~~~~~~~S~aa~~L~~Wv~Ai~~y~~v~~~v~P~~~~l~ 1246 (1614)
|++|++++|+++|. +||+++|+++++++|+++|+++|+|+|+.+.++|.||++||.||+||++|+.+.++|+|++++++
T Consensus 112 k~~L~~~~Fl~~L~-~fdkd~I~~~~~~~l~~~y~~~p~F~~e~v~~~S~Aa~~Lc~WV~A~~~Y~~l~~eV~pLk~eLk 190 (536)
T 3err_A 112 RSIIMRENFIPTIV-NFSAEEISDAIREKMKKNYMSNPSYNYEIVNRASLAAGPMVKWAIAQLNYADMLKRVEPLRNELQ 190 (536)
T ss_dssp TTGGGCTTHHHHHH-HCCGGGCCHHHHHHHHHHTTTSTTCSHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccCcHHHHHHHH-hcCcccCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhcchhHHHHHhhhhhHHHHH
Confidence 99999999999999 99999999999999975799999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHH
Q psy568 1247 SLEVQASENKAKGEE 1261 (1614)
Q Consensus 1247 ~~~~~~~~~~~~l~~ 1261 (1614)
++++++.++++++++
T Consensus 191 ~lE~eL~e~e~eL~~ 205 (536)
T 3err_A 191 KLEDDAKDNQQKLEA 205 (536)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 888777666655443
No 5
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.95 E-value=1e-26 Score=330.64 Aligned_cols=425 Identities=20% Similarity=0.270 Sum_probs=300.1
Q ss_pred ccCCcceeeeCcchhhHHHHHHHHHhcCCCEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCCHHHHHhHhhcccc
Q psy568 389 KVAASDVVVPTLDTVRHESLLYTWLAEHKPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTPELLLKTFDHYCE 468 (1614)
Q Consensus 389 ~~~~~~~~vpT~~t~r~~~ll~~~l~~~~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~~~~l~~~~~~~~~ 468 (1614)
..+....+|.||.|.|+...+..++..+.|+++.||+|||||++++.+++.+ +.+++.+||+..+++.++.+.+.+
T Consensus 618 YlG~~~rlViTPltdr~~~tl~~Al~~~~~~~l~GpaGtGKTe~vk~LA~~l-g~~~v~~nc~e~ld~~~lg~~~~g--- 693 (2695)
T 4akg_A 618 YIGIPERLIYTPLLLIGFATLTDSLHQKYGGCFFGPAGTGKTETVKAFGQNL-GRVVVVFNCDDSFDYQVLSRLLVG--- 693 (2695)
T ss_dssp CCCSCCCCCCCHHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHTT-TCCCEEEETTSSCCHHHHHHHHHH---
T ss_pred ccCCCCcceecHHHHHHHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHHHHh-CCcEEEEECCCCCChhHhhHHHHH---
Confidence 3444567999999999999999999999999999999999999999999988 889999999999999988665532
Q ss_pred eeecCCccccccccCCceEEEEeccCCCCCccccCcccHHHHHHH--------HHHcCceeeCCCCceEeecCeEEEEee
Q psy568 469 YRKTPNGVILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQ--------LIEQRGFYRPADKQWVSLERIQCVGAC 540 (1614)
Q Consensus 469 ~~~~~~g~~~~p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrq--------lld~~~~~~~~~~~~~~~~~~~~iaa~ 540 (1614)
..+.|.|+++ ||+|+..+ ++++.|.+ +.++...+...+..+...+++.+++||
T Consensus 694 -----------~~~~Gaw~~~--DE~nr~~~------evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~ 754 (2695)
T 4akg_A 694 -----------ITQIGAWGCF--DEFNRLDE------KVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITL 754 (2695)
T ss_dssp -----------HHHHTCEEEE--ETTTSSCH------HHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEE
T ss_pred -----------HHhcCCEeee--hhhhhcCh------HHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEe
Confidence 2335778888 99999444 46666522 223333344444456667899999999
Q ss_pred cCCCCCCCCCCcccccccccEEEecCCChhHHHHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHHHhhcCCCCCCcc
Q psy568 541 NPPTDPGRKPLSHRFLRHVPVIYVDYPGETSLKQIYGTFSRAMLRLIPPLRGYADALTNAMVELYLASQEKFTQDMQPHY 620 (1614)
Q Consensus 541 n~~~~~g~~~l~~r~~r~f~~i~i~~p~~~~l~~I~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~hY 620 (1614)
||++ +|+.+||+.|.++|+.+++..|+.+.+..|.-. ......+..++..++.+|..+++.+ +.+.||
T Consensus 755 NPgy-~g~~eLP~~Lk~~Fr~v~m~~Pd~~~i~ei~l~---------s~Gf~~a~~la~kiv~~~~l~~e~l--s~q~hy 822 (2695)
T 4akg_A 755 NPGY-NGRSELPENLKKSFREFSMKSPQSGTIAEMILQ---------IMGFEDSKSLASKIVHFLELLSSKC--SSMNHY 822 (2695)
T ss_dssp CCCS-SSSCCCCHHHHTTEEEEECCCCCHHHHHHHHHH---------HHHCSSHHHHHHHHHHHHHHHHHHS--CCCTTC
T ss_pred CCCc-cCcccccHHHHhheEEEEeeCCCHHHHHHHHHH---------hcCCCchHHHHHHHHHHHHHHHHHh--CcCCcc
Confidence 9975 899999999999999999999999998888421 1112346788889999999988877 557799
Q ss_pred ccChhhHHHHhhhhhcccCCCccCCHHHHHHHHHHhhhhhhcccCCChhHHHHHHHHHHHHHHhhcCCcchhhcccCcee
Q psy568 621 VYSPREMTRWVRGICEAIRPLESLTVEGLVRLWAHEALRLFQDRLVNDVERQWTNENIDAVAMKYFSNIDKEVLARPILY 700 (1614)
Q Consensus 621 ~F~lRdl~~v~~~i~~~~~~~~~~~~~~l~~lw~hE~~Rvf~DRL~~~~d~~~~~~~l~~~~~~~f~~~~~~~~~~~~~~ 700 (1614)
.|+||.+.+|+.......... . +.+.+ .+.-...++-.++ ..+|...|..++.+ .|++... |
T Consensus 823 dfglRalksvL~~ag~lkr~~-~-~e~~~---l~~al~~~~lpk~-~~~D~~lf~~li~d----lFp~~~~-----~--- 884 (2695)
T 4akg_A 823 HFGLRTLKGVLRNCSPLISEF-G-EGEKT---VVESLKRVILPSL-GDTDELVFKDELSK----IFDSAGT-----P--- 884 (2695)
T ss_dssp CCSHHHHHHHHHHHHHHHHHS-C-SSHHH---HHHHHHHHTGGGC-CHHHHHHHHHHHHH----HCCCCSC-----C---
T ss_pred cccHHHHHHHHHHHHHhhccC-C-cHHHH---HHHHHHHhccccC-chhhHHHHHHHHHH----hCCCCCC-----C---
Confidence 999999999887543321111 1 22221 1111222333444 36677766665554 4664321 1
Q ss_pred ccCCcCCCcccChhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHHhccCCccEEEeecCCCChHHHHHHHHHH
Q psy568 701 SNWLSKNYVPVGTTELREYVQARLKVFYEEELDVQLVLFDEVLDHVLRIDRIFRQPQGHLLLIGVSGAGKTTLSRFVAFM 780 (1614)
Q Consensus 701 ~~~~~~~~~~v~~~~l~~~~~~~l~~~~~~~~~~~lvlf~~~i~hi~ri~Ril~~p~gh~LLvG~~GsGKtsl~rlaA~~ 780 (1614)
.+...+...+.+.+.. ..+...+..+..+..+.+++...+| +||+||+|||||++++.+|..
T Consensus 885 ----------~~~~~l~~~i~~~~~~-------~~l~~~~~~~~K~~ql~e~~~~r~g-vmlvGptgsGKTt~~~~La~a 946 (2695)
T 4akg_A 885 ----------LNSKAIVQCLKDAGQR-------SGFSMSEEFLKKCMQFYYMQKTQQA-LILVGKAGCGKTATWKTVIDA 946 (2695)
T ss_dssp ----------SSSSHHHHHHHHHHHH-------HTCCCCHHHHHHHHHHHHHHHHCSE-EEEECSTTSSHHHHHHHHHHH
T ss_pred ----------CChHHHHHHHHHHHHH-------cCCcccHHHHHHHHHHHHHHHhcce-EEEECCCCCCHHHHHHHHHHH
Confidence 1122344344333322 2344557778888899999888777 999999999999999988865
Q ss_pred c----CCeEEEEEecCC-------CC-----hhcHHHHHHHHHHHhccC-------CCcEEEEEcCCcccccchHHHHHH
Q psy568 781 N----GLSVFQIRAHNK-------YT-----GADFDEDLRTVLRRSGCK-------NEKIAFLLDESNVLESGFLERMNT 837 (1614)
Q Consensus 781 ~----~~~~~~i~~~~~-------~~-----~~df~~~lk~~l~~ag~~-------~~~~v~ll~d~~i~~~~~le~in~ 837 (1614)
. |.+.....++.. || ..+|.+++-..+.|..++ +.+.|+++|.. +|+.|+|.+|+
T Consensus 947 l~~l~~~~~~~~~inpk~~t~~el~G~~d~~t~eW~DGils~~~R~~~~~~~~~~~~~~~WivfDG~--vD~~WIE~LNs 1024 (2695)
T 4akg_A 947 MAIFDGHANVVYVIDTKVLTKESLYGSMLKATLEWRDGLFTSILRRVNDDITGTFKNSRIWVVFDSD--LDPEYVEAMNS 1024 (2695)
T ss_dssp HHHHTCCEEEEEEECTTTSCHHHHTTEECTTTCCEECCSHHHHHHHHHTCCCSSCSSEEEEEEECSC--CCHHHHHTTHH
T ss_pred HHHhcCCCceEEEeCCCCCCHHHhcceecCCCCeEecChHHHHHHHHHhccccccCCCCeEEEECCC--CCHHHHHHHHH
Confidence 2 444333222221 22 458888855544443222 12679999843 79999999999
Q ss_pred hhccCCCCCCCChhhHHHHHHHhHHHHHHcCCCCCCHHHHHHHHHHHHhhcceEEEEECCCChhhHHHhhhCccccccce
Q psy568 838 LLANGEIPGLFEGDEYTTLMTQCKEGAQREGLMLDSNEELYKWFTQQVMKNLHVVFTMNPSSEGLKDRAATSPALFNRCV 917 (1614)
Q Consensus 838 lL~~G~v~~Lf~~eE~~~i~~~~~~~~~~~~~~~~s~~~l~~~f~~rv~~nlhivl~~sp~~~~~r~~~~~~PaL~~~~~ 917 (1614)
+|..+-.--|-++|.+ ++..+++++|-+..... .+||.+++|.
T Consensus 1025 VLDDNk~L~L~ngErI------------------------------~l~~~~~llFEv~dL~~-------ASPATVSRcG 1067 (2695)
T 4akg_A 1025 VLDDNKILTLPNGERL------------------------------PIPPNFRILFETDNLDH-------TTPATITRCG 1067 (2695)
T ss_dssp HHSTTCEEECSSSCEE------------------------------ECCSSCEEEEEESCCTT-------SCHHHHHHSE
T ss_pred HhcCCCccccCCCCEE------------------------------ecCCCcEEEEEeccccc-------CCccceeeee
Confidence 9987776666555442 12348999998876543 5999999999
Q ss_pred ecccCC
Q psy568 918 LNWFGD 923 (1614)
Q Consensus 918 i~wf~~ 923 (1614)
+.|+++
T Consensus 1068 mvy~~~ 1073 (2695)
T 4akg_A 1068 LLWFST 1073 (2695)
T ss_dssp EEECCS
T ss_pred EEEecC
Confidence 999975
No 6
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=99.95 E-value=3.7e-27 Score=334.93 Aligned_cols=433 Identities=21% Similarity=0.262 Sum_probs=308.8
Q ss_pred cccCCcceeeeCcchhhHHHHHHHHHhcCCCEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCCHHHHHhHhhccc
Q psy568 388 QKVAASDVVVPTLDTVRHESLLYTWLAEHKPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTPELLLKTFDHYC 467 (1614)
Q Consensus 388 ~~~~~~~~~vpT~~t~r~~~ll~~~l~~~~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~~~~l~~~~~~~~ 467 (1614)
...+....+|.||-|.|+...+..++..+.+..+.||+|||||.+++++++.+ +.+++.+||+..++...+.+.+.
T Consensus 576 EYlG~~~rLViTPLTdrcy~tl~~Al~~~~gg~~~GPaGtGKTet~k~La~~l-gr~~~vfnC~~~~d~~~~g~i~~--- 651 (3245)
T 3vkg_A 576 EYLGIGERLVQTPLTDRCYLTLTQALESRMGGNPFGPAGTGKTETVKALGSQL-GRFVLVFCCDEGFDLQAMSRIFV--- 651 (3245)
T ss_dssp CCCCSCCCCCCCHHHHHHHHHHHHHHHTTCEEEEECSTTSSHHHHHHHHHHHT-TCCEEEEECSSCCCHHHHHHHHH---
T ss_pred ccCCCCCCCcCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHh-CCeEEEEeCCCCCCHHHHHHHHh---
Confidence 34555678999999999999999999999999999999999999999999998 88999999999999987765553
Q ss_pred ceeecCCccccccccCCceEEEEeccCCCCCccccCcccHHHHHHH--------HHHcCceeeCC-CCceEeecCeEEEE
Q psy568 468 EYRKTPNGVILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQ--------LIEQRGFYRPA-DKQWVSLERIQCVG 538 (1614)
Q Consensus 468 ~~~~~~~g~~~~p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrq--------lld~~~~~~~~-~~~~~~~~~~~~ia 538 (1614)
| .++.|.|+++ ||+|+...+ ++..+-+ +.++..-+.-. +..+...+++.+++
T Consensus 652 -------G----~~~~GaW~cf--DEfNrl~~~------vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfi 712 (3245)
T 3vkg_A 652 -------G----LCQCGAWGCF--DEFNRLEER------ILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFV 712 (3245)
T ss_dssp -------H----HHHHTCEEEE--ETTTSSCHH------HHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEE
T ss_pred -------h----HhhcCcEEEe--hhhhcCCHH------HHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEE
Confidence 2 2346889988 999995544 5554444 33343434333 44566678999999
Q ss_pred eecCCCCCCCCCCcccccccccEEEecCCChhHHHHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHHHhhcCCCCCC
Q psy568 539 ACNPPTDPGRKPLSHRFLRHVPVIYVDYPGETSLKQIYGTFSRAMLRLIPPLRGYADALTNAMVELYLASQEKFTQDMQP 618 (1614)
Q Consensus 539 a~n~~~~~g~~~l~~r~~r~f~~i~i~~p~~~~l~~I~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 618 (1614)
||||.+ .||.+||+.+..+|+++.++.|+.+.+..|. ++......+..++..++.+|..+.+++ +.+.
T Consensus 713 TmNpgY-~gr~eLP~nLk~lFr~v~m~~Pd~~~i~ei~---------L~s~Gf~~a~~La~k~~~~~~l~~e~L--S~Q~ 780 (3245)
T 3vkg_A 713 TMNPGY-AGRSNLPDNLKKLFRSMAMIKPDREMIAQVM---------LYSQGFKTAEVLAGKIVPLFKLCQEQL--SAQS 780 (3245)
T ss_dssp CBCCCG-GGCCCSCHHHHTTEEEEECCSCCHHHHHHHH---------HHTTTCSCHHHHHHHHHHHHHHHHHSS--CCCT
T ss_pred EeCCCc-cCcccChHHHHhhcEEEEEeCCCHHHHHHHH---------HHHcccchHHHHHHHHHHHHHHHHHHh--CCCC
Confidence 999965 8999999999999999999999999999883 222223456889999999999999888 5678
Q ss_pred ccccChhhHHHHhhhhhcccCCC--cc----CCH----HHHHHHHHHh---hhhhhcccCCC---hhHHHHHHHHHHHHH
Q psy568 619 HYVYSPREMTRWVRGICEAIRPL--ES----LTV----EGLVRLWAHE---ALRLFQDRLVN---DVERQWTNENIDAVA 682 (1614)
Q Consensus 619 hY~F~lRdl~~v~~~i~~~~~~~--~~----~~~----~~l~~lw~hE---~~Rvf~DRL~~---~~d~~~~~~~l~~~~ 682 (1614)
||.|+||.+..|+.......... .. .+. .........| .+|..+|-.+. .+|...|..++.++
T Consensus 781 HYDfGLRalKsVL~~AG~lkr~~~~~~~~~~~~~~~~~~~~~~~~~~E~~illralrd~nlpKl~~~D~plF~~li~Dl- 859 (3245)
T 3vkg_A 781 HYDFGLRALKSVLVSAGGIKRKCQPPQLPPITDAESKTKADQIYCQYEIGVLLNSINDTMIPKLVADDIPLIQSLLLDV- 859 (3245)
T ss_dssp TCCCSHHHHHHHHHHHHHHHHSCCCC------CHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSCGGGHHHHHHHHHHH-
T ss_pred CCCCChHHHHHHHHHHHHHHHhhhhhcccccccccccccccccccccHHHHHHHHHHHhccCCCchhhHHHHHHHHHHh-
Confidence 99999999999987543321111 00 110 0000000111 23555554332 35666665555544
Q ss_pred HhhcCCcchhhcccCceeccCCcCCCcccChhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHHhccCCccEEE
Q psy568 683 MKYFSNIDKEVLARPILYSNWLSKNYVPVGTTELREYVQARLKVFYEEELDVQLVLFDEVLDHVLRIDRIFRQPQGHLLL 762 (1614)
Q Consensus 683 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~l~~~~~~~~~~~lvlf~~~i~hi~ri~Ril~~p~gh~LL 762 (1614)
||+.+. ...+..++.+.+.+.+.+ +++...+..+..+..+..++...+| +||
T Consensus 860 ---FPgv~~-----------------~~~~~~~l~~ai~~~~~~-------~~L~~~~~~v~KviQLye~~~vRhG-vml 911 (3245)
T 3vkg_A 860 ---FPGSQL-----------------QPIQMDQLRKKIQEIAKQ-------RHLVTKQEWVEKILQLHQILNINHG-VMM 911 (3245)
T ss_dssp ---STTCCC-----------------CCCCCHHHHHHHHHHHHH-------TTCCCCHHHHHHHHHHHHHHTTCSE-EEE
T ss_pred ---CCCCCC-----------------CCCchHHHHHHHHHHHHH-------cCCccCHHHHHHHHHHHHHHHheee-EEE
Confidence 665331 122334455555444433 3566667889999999999998888 999
Q ss_pred eecCCCChHHHHHHHHHHc----CCeEEEEEecCC-------C-----ChhcHHHHHHHHHHHhcc------CCCcEEEE
Q psy568 763 IGVSGAGKTTLSRFVAFMN----GLSVFQIRAHNK-------Y-----TGADFDEDLRTVLRRSGC------KNEKIAFL 820 (1614)
Q Consensus 763 vG~~GsGKtsl~rlaA~~~----~~~~~~i~~~~~-------~-----~~~df~~~lk~~l~~ag~------~~~~~v~l 820 (1614)
|||+|||||++.+.++... |.+.....++.. | ...||.|++-..+.|..+ ..++.|++
T Consensus 912 VGp~gsGKTt~~~~L~~al~~l~~~~~~~~~iNPKait~~eLyG~~d~~T~EW~DGvls~i~R~~~~~~~~~~~~~~WIv 991 (3245)
T 3vkg_A 912 VGPSGGGKTTSWEVYLEAIEQVDNIKSEAHVMDPKAITKDQLFGSLDLTTREWTDGLFTATLRRIIDNVRGESTKRHWII 991 (3245)
T ss_dssp ECSSSSSHHHHHHHHHHHHTTTTTCEEEEEEECTTTSCHHHHHEEECTTTCCEEECHHHHHHHHHHTTSSSGGGEEEEEE
T ss_pred ECCCCCCHHHHHHHHHHHHHHhhCCCceEEEECCCCCchhhhceeecCCCCeeeccHHHHHHHHHHhcccCCCCCceEEE
Confidence 9999999999999877653 334333222221 2 257899987665554432 23468999
Q ss_pred EcCCcccccchHHHHHHhhccCCCCCCCChhhHHHHHHHhHHHHHHcCCCCCCHHHHHHHHHHHHhhcceEEEEECCCCh
Q psy568 821 LDESNVLESGFLERMNTLLANGEIPGLFEGDEYTTLMTQCKEGAQREGLMLDSNEELYKWFTQQVMKNLHVVFTMNPSSE 900 (1614)
Q Consensus 821 l~d~~i~~~~~le~in~lL~~G~v~~Lf~~eE~~~i~~~~~~~~~~~~~~~~s~~~l~~~f~~rv~~nlhivl~~sp~~~ 900 (1614)
+|.. +|+.|+|.+|++|...-+--|-++|-+ ++..|++++|-+.....
T Consensus 992 fDGp--VDa~WIEnlNsVLDDNK~LtL~nGErI------------------------------~l~~~~~liFEv~dL~~ 1039 (3245)
T 3vkg_A 992 FDGD--VDPEWVENLNSLLDDNKLLTLPNGERL------------------------------ALPNNVRVMFEVQDLKY 1039 (3245)
T ss_dssp EESC--CCHHHHTTTHHHHSSSCEECCTTSCCE------------------------------ECCTTEEEEEEESCCTT
T ss_pred ECCC--CCHHHHHHHHHHhcCCCeeecCCCCee------------------------------ecCCCCEEEEEeccccc
Confidence 9876 799999999999988877777776643 12248999999987654
Q ss_pred hhHHHhhhCccccccceecccCC
Q psy568 901 GLKDRAATSPALFNRCVLNWFGD 923 (1614)
Q Consensus 901 ~~r~~~~~~PaL~~~~~i~wf~~ 923 (1614)
.+||.|+||.+.|+++
T Consensus 1040 -------ASPATVSRcGmVy~~~ 1055 (3245)
T 3vkg_A 1040 -------ATLATISRCGMVWFSE 1055 (3245)
T ss_dssp -------CCHHHHHTSEEEECCT
T ss_pred -------cChhhheeeeEEEEcc
Confidence 4999999999999874
No 7
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.74 E-value=2.5e-17 Score=219.01 Aligned_cols=410 Identities=18% Similarity=0.240 Sum_probs=225.5
Q ss_pred cCCCEEEecCCCCchHHHHHHHHhcC---------CCCceEEEEcccCCCHHHHHhHhhcccceeecCCccccccccCCc
Q psy568 415 EHKPLVLCGPPGSGKTMTLLSALRAL---------PDMEVVSLNFSSATTPELLLKTFDHYCEYRKTPNGVILSPIQLGK 485 (1614)
Q Consensus 415 ~~~~vLL~Gp~GtGKT~lv~~~~~~l---------~~~~~~~i~~s~~t~~~~l~~~~~~~~~~~~~~~g~~~~p~~~gk 485 (1614)
.+.++||+||||||||++++.++..+ .+..++.++++.........+.++..+. . ++......+
T Consensus 206 ~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~~g~~e~~l~------~-~~~~~~~~~ 278 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFK------A-LLKQLEQDT 278 (758)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSSCHHHHHH------H-HHHHHSSSS
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhccccccchHHHHHH------H-HHHHHHhcC
Confidence 56889999999999999999988764 1334455554433221100011110000 0 111111223
Q ss_pred eEEEEeccCCCCCccc---cCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCCCcccccccccEE
Q psy568 486 WLVLFCDEINLPDMDK---YATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLRHVPVI 562 (1614)
Q Consensus 486 ~~vlfiDdin~p~~d~---~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r~f~~i 562 (1614)
..++||||++...... .|...+..+|+++++. .++.+|++++++...+...++++|.|||.++
T Consensus 279 ~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~--------------~~~~~I~at~~~~~~~~~~~d~aL~~Rf~~i 344 (758)
T 1r6b_X 279 NSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS--------------GKIRVIGSTTYQEFSNIFEKDRALARRFQKI 344 (758)
T ss_dssp CEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSS--------------CCCEEEEEECHHHHHCCCCCTTSSGGGEEEE
T ss_pred CeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhC--------------CCeEEEEEeCchHHhhhhhcCHHHHhCceEE
Confidence 5899999999643221 1344555566555543 2577899998764335667889999999999
Q ss_pred EecCCChhHHHHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHHHhhcCCCCCCccccChhhHHHHhhhhhcccCCCc
Q psy568 563 YVDYPGETSLKQIYGTFSRAMLRLIPPLRGYADALTNAMVELYLASQEKFTQDMQPHYVYSPREMTRWVRGICEAIRPLE 642 (1614)
Q Consensus 563 ~i~~p~~~~l~~I~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~hY~F~lRdl~~v~~~i~~~~~~~~ 642 (1614)
.++.|+.++...|+..+...+.... . ..+.+..+.++.... ..+.. ..|.+..+..++...+......
T Consensus 345 ~v~~p~~~e~~~il~~l~~~~~~~~-~-v~~~~~al~~~~~~s----~~~i~-----~~~lp~~~i~lld~a~~~~~~~- 412 (758)
T 1r6b_X 345 DITEPSIEETVQIINGLKPKYEAHH-D-VRYTAKAVRAAVELA----VKYIN-----DRHLPDKAIDVIDEAGARARLM- 412 (758)
T ss_dssp ECCCCCHHHHHHHHHHHHHHHHHHH-T-CCCCHHHHHHHHHHH----HHHCT-----TSCTTHHHHHHHHHHHHHHHHS-
T ss_pred EcCCCCHHHHHHHHHHHHHHHHHhc-C-CCCCHHHHHHHHHHh----hhhcc-----cccCchHHHHHHHHHHHHHhcc-
Confidence 9999999999999887665432100 0 011111122222111 11100 1112223333332221110000
Q ss_pred cCCHHHHHHHHHHhhhhhhcccCCChhHHHHHHHHHHHHHHhhcCCcchhhcccCceeccCCcCCCcccChhHHHHHHHH
Q psy568 643 SLTVEGLVRLWAHEALRLFQDRLVNDVERQWTNENIDAVAMKYFSNIDKEVLARPILYSNWLSKNYVPVGTTELREYVQA 722 (1614)
Q Consensus 643 ~~~~~~l~~lw~hE~~Rvf~DRL~~~~d~~~~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~ 722 (1614)
.+. -...-++.+|. ..++....+ . ....+...+... +.
T Consensus 413 ------------~~~---~~~~~v~~~di-------~~~~~~~~~-i-----------------p~~~~~~~~~~~-l~- 450 (758)
T 1r6b_X 413 ------------PVS---KRKKTVNVADI-------ESVVARIAR-I-----------------PEKSVSQSDRDT-LK- 450 (758)
T ss_dssp ------------SSC---CCCCSCCHHHH-------HHHHHHHSC-C-----------------CCCCSSSSHHHH-HH-
T ss_pred ------------ccc---ccCCccCHHHH-------HHHHHHhcC-C-----------------CccccchhHHHH-HH-
Confidence 000 00111222222 112111111 0 001111111111 10
Q ss_pred HHHHHHhhhcccchhhHHHHHHHHHHHHHHhc-------cCCccEEEeecCCCChHHHHHHHHHHcCCeEEEEEecCCCC
Q psy568 723 RLKVFYEEELDVQLVLFDEVLDHVLRIDRIFR-------QPQGHLLLIGVSGAGKTTLSRFVAFMNGLSVFQIRAHNKYT 795 (1614)
Q Consensus 723 ~l~~~~~~~~~~~lvlf~~~i~hi~ri~Ril~-------~p~gh~LLvG~~GsGKtsl~rlaA~~~~~~~~~i~~~~~~~ 795 (1614)
.+. ......++-.++++..+.+..+..+ .|.||+||+||+|+|||++++.+|...+.+++.++++....
T Consensus 451 ~l~----~~l~~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~ 526 (758)
T 1r6b_X 451 NLG----DRLKMLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYME 526 (758)
T ss_dssp HHH----HHHTTTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSS
T ss_pred HHH----HHHHhhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcc
Confidence 111 1122345666788888877766544 57789999999999999999999999999999998765422
Q ss_pred ---hhc-------HHH-----HHHHHHHHhccCCCcEEEEEcCCcccccchHHHHHHhhccCCCCCCCChhhHHHHHHHh
Q psy568 796 ---GAD-------FDE-----DLRTVLRRSGCKNEKIAFLLDESNVLESGFLERMNTLLANGEIPGLFEGDEYTTLMTQC 860 (1614)
Q Consensus 796 ---~~d-------f~~-----~lk~~l~~ag~~~~~~v~ll~d~~i~~~~~le~in~lL~~G~v~~Lf~~eE~~~i~~~~ 860 (1614)
.++ +.+ .+...+++ ..+.++++||-+-.++.+++.+..+|..|.+.+--
T Consensus 527 ~~~~~~l~g~~~g~~g~~~~~~l~~~~~~----~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~------------ 590 (758)
T 1r6b_X 527 RHTVSRLIGAPPGYVGFDQGGLLTDAVIK----HPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNN------------ 590 (758)
T ss_dssp SSCCSSSCCCCSCSHHHHHTTHHHHHHHH----CSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETT------------
T ss_pred hhhHhhhcCCCCCCcCccccchHHHHHHh----CCCcEEEEeCccccCHHHHHHHHHHhcCcEEEcCC------------
Confidence 111 221 12333333 34678999998888888888888888877654311
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHHHhhcceEEEEECCCChhhH----------------HH--hhhCccccccc-eeccc
Q psy568 861 KEGAQREGLMLDSNEELYKWFTQQVMKNLHVVFTMNPSSEGLK----------------DR--AATSPALFNRC-VLNWF 921 (1614)
Q Consensus 861 ~~~~~~~~~~~~s~~~l~~~f~~rv~~nlhivl~~sp~~~~~r----------------~~--~~~~PaL~~~~-~i~wf 921 (1614)
|...+ .+|..||++.++....+. .. -...|+|+++| .+..|
T Consensus 591 -------g~~~~-------------~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~ 650 (758)
T 1r6b_X 591 -------GRKAD-------------FRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWF 650 (758)
T ss_dssp -------TEEEE-------------CTTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHTTCSEEEEC
T ss_pred -------CCEEe-------------cCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcceee
Confidence 10000 036777777776432211 00 13468999999 78899
Q ss_pred CCCcHHHHHHHHHHhhcc
Q psy568 922 GDWSDTALYQVAKEFTSK 939 (1614)
Q Consensus 922 ~~W~~eaL~~va~~~l~~ 939 (1614)
.+++.+.+..++.+++..
T Consensus 651 ~~l~~~~~~~i~~~~l~~ 668 (758)
T 1r6b_X 651 DHLSTDVIHQVVDKFIVE 668 (758)
T ss_dssp CCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999988764
No 8
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.72 E-value=2.3e-17 Score=220.96 Aligned_cols=458 Identities=19% Similarity=0.231 Sum_probs=226.9
Q ss_pred cCCCEEEecCCCCchHHHHHHHHhcC---------CCCceEEEEcccCCCHHHHHhHhhcccceeecCCccccccccCCc
Q psy568 415 EHKPLVLCGPPGSGKTMTLLSALRAL---------PDMEVVSLNFSSATTPELLLKTFDHYCEYRKTPNGVILSPIQLGK 485 (1614)
Q Consensus 415 ~~~~vLL~Gp~GtGKT~lv~~~~~~l---------~~~~~~~i~~s~~t~~~~l~~~~~~~~~~~~~~~g~~~~p~~~gk 485 (1614)
...+++|+||||||||++++.++..+ .+..++.++++.........+.++..+. +.+-.....++
T Consensus 190 ~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g~~~~g~~~~~l~------~~~~~~~~~~~ 263 (854)
T 1qvr_A 190 TKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLK------AVIQEVVQSQG 263 (854)
T ss_dssp SCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----------CHHHHHH------HHHHHHHTTCS
T ss_pred CCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhccCccchHHHHHHH------HHHHHHHhcCC
Confidence 34689999999999999999998765 3566778888765432222221111110 11111111234
Q ss_pred eEEEEeccCCCCC--ccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCCCcccccccccEEE
Q psy568 486 WLVLFCDEINLPD--MDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLRHVPVIY 563 (1614)
Q Consensus 486 ~~vlfiDdin~p~--~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r~f~~i~ 563 (1614)
+.|+||||+|... .+..|.+.+..+|+.+++.+ ++.+|+|+|++.. .+..++++|.|||.++.
T Consensus 264 ~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~~--------------~i~~I~at~~~~~-~~~~~d~aL~rRf~~i~ 328 (854)
T 1qvr_A 264 EVILFIDELHTVVGAGKAEGAVDAGNMLKPALARG--------------ELRLIGATTLDEY-REIEKDPALERRFQPVY 328 (854)
T ss_dssp SEEEEECCC-------------------HHHHHTT--------------CCCEEEEECHHHH-HHHTTCTTTCSCCCCEE
T ss_pred CeEEEEecHHHHhccCCccchHHHHHHHHHHHhCC--------------CeEEEEecCchHH-hhhccCHHHHhCCceEE
Confidence 6899999999743 33335577788899998764 3567898887641 12457899999999999
Q ss_pred ecCCChhHHHHHHHHHHHhhhh-----cchhhhhhHHHH----------HHHHHHHHHHHHhhcCCCCCCccccChhhHH
Q psy568 564 VDYPGETSLKQIYGTFSRAMLR-----LIPPLRGYADAL----------TNAMVELYLASQEKFTQDMQPHYVYSPREMT 628 (1614)
Q Consensus 564 i~~p~~~~l~~I~~~~~~~~~~-----~~~~~~~~~~~l----------~~~~~~~~~~~~~~~~~~~~~hY~F~lRdl~ 628 (1614)
++.|+.++...|+..++..+.. +.+.....+-.+ ....+++.......... ...-.+.++.
T Consensus 329 l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i~~~~lp~kai~lldea~a~~~~----~~~~~p~~l~ 404 (854)
T 1qvr_A 329 VDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDKAIDLIDEAAARLRM----ALESAPEEID 404 (854)
T ss_dssp ECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCTHHHHHHHHHHHHHHHHH----TTTTHHHHHH
T ss_pred eCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhcccccChHHHHHHHHHHHHHHHh----hccCCchhHH
Confidence 9999999999999877664421 111111100000 11222222222211100 0111233333
Q ss_pred HHhhhhhccc------CCCc------------------cCCHHHHHHHHHHhhhhhhcccCCChhHHHHHHHHHHHH---
Q psy568 629 RWVRGICEAI------RPLE------------------SLTVEGLVRLWAHEALRLFQDRLVNDVERQWTNENIDAV--- 681 (1614)
Q Consensus 629 ~v~~~i~~~~------~~~~------------------~~~~~~l~~lw~hE~~Rvf~DRL~~~~d~~~~~~~l~~~--- 681 (1614)
++-+.+.... .... ......+...|.+|+.++-.-|-...+- ......+...
T Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 483 (854)
T 1qvr_A 405 ALERKKLQLEIEREALKKEKDPDSQERLKAIEAEIAKLTEEIAKLRAEWEREREILRKLREAQHRL-DEVRREIELAERQ 483 (854)
T ss_dssp HHHHHHHHHHHHHHHHSSCSSHHHHSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhHHHHHhc
Confidence 3333332110 0000 0012345677888876553322110000 0000000000
Q ss_pred ------HH---hhcCCcchh--hcc--cCceeccCCcCCCcccChhHHHHHHHHHHH----H----------HHhhhccc
Q psy568 682 ------AM---KYFSNIDKE--VLA--RPILYSNWLSKNYVPVGTTELREYVQARLK----V----------FYEEELDV 734 (1614)
Q Consensus 682 ------~~---~~f~~~~~~--~~~--~~~~~~~~~~~~~~~v~~~~l~~~~~~~l~----~----------~~~~~~~~ 734 (1614)
.. ..++..... ... .+ - .+++. .+++.+++...+..... . ........
T Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~---~~v~~~~l~~~v~~~~~ip~~~~~~~~~~~l~~l~~~l~~ 558 (854)
T 1qvr_A 484 YDLNRAAELRYGELPKLEAEVEALSEKLR-G-ARFVR---LEVTEEDIAEIVSRWTGIPVSKLLEGEREKLLRLEEELHK 558 (854)
T ss_dssp TCHHHHHHHHTTHHHHHHHHHHHHHHHSS-S-CSSCC---SEECHHHHHHHHHTTSSCHHHHTTCCHHHHHHSHHHHHHH
T ss_pred ccHHHHHHHhhhhhHHHHHHHHHHHhhhc-c-ccccc---CCcCHHHHHHHHHHHhCCChHhhcHHHHHHHHHHHHHHhc
Confidence 00 000000000 000 00 0 01111 12333333332211100 0 00011112
Q ss_pred chhhHHHHHHHHHHHHHHhc-------cCCccEEEeecCCCChHHHHHHHHHHc---CCeEEEEEecCCCC---hhcHH-
Q psy568 735 QLVLFDEVLDHVLRIDRIFR-------QPQGHLLLIGVSGAGKTTLSRFVAFMN---GLSVFQIRAHNKYT---GADFD- 800 (1614)
Q Consensus 735 ~lvlf~~~i~hi~ri~Ril~-------~p~gh~LLvG~~GsGKtsl~rlaA~~~---~~~~~~i~~~~~~~---~~df~- 800 (1614)
+++-...++..+.+..+..+ .|.+++||+||+|+|||++++.+|... +.+++.++++.... .+++.
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~s~l~g 638 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIG 638 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGGGGC--
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHHHHHcC
Confidence 34555777777777665543 345899999999999999999999887 77888887664322 12211
Q ss_pred -----------HHHHHHHHHhccCCCcEEEEEcCCcccccchHHHHHHhhccCCCCCCCChhhHHHHHHHhHHHHHHcCC
Q psy568 801 -----------EDLRTVLRRSGCKNEKIAFLLDESNVLESGFLERMNTLLANGEIPGLFEGDEYTTLMTQCKEGAQREGL 869 (1614)
Q Consensus 801 -----------~~lk~~l~~ag~~~~~~v~ll~d~~i~~~~~le~in~lL~~G~v~~Lf~~eE~~~i~~~~~~~~~~~~~ 869 (1614)
+.+...+.+ ..+.++++|+-+-.++.+.+.+..+|..|.+.+- .|.
T Consensus 639 ~~~~~~G~~~~g~l~~~~~~----~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~-------------------~g~ 695 (854)
T 1qvr_A 639 APPGYVGYEEGGQLTEAVRR----RPYSVILFDEIEKAHPDVFNILLQILDDGRLTDS-------------------HGR 695 (854)
T ss_dssp ------------CHHHHHHH----CSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCS-------------------SSC
T ss_pred CCCCCcCccccchHHHHHHh----CCCeEEEEecccccCHHHHHHHHHHhccCceECC-------------------CCC
Confidence 112222222 3356899999888888899999999988865411 111
Q ss_pred CCCCHHHHHHHHHHHHhhcceEEEEECCCCh-------------hhHHHh------hhCccccccc-eecccCCCcHHHH
Q psy568 870 MLDSNEELYKWFTQQVMKNLHVVFTMNPSSE-------------GLKDRA------ATSPALFNRC-VLNWFGDWSDTAL 929 (1614)
Q Consensus 870 ~~~s~~~l~~~f~~rv~~nlhivl~~sp~~~-------------~~r~~~------~~~PaL~~~~-~i~wf~~W~~eaL 929 (1614)
..+ -+|..||++.+.... .++..+ +..|.|+++| .+.+|.|...+.+
T Consensus 696 ~vd-------------~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~Rl~~~i~~~pl~~edi 762 (854)
T 1qvr_A 696 TVD-------------FRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQI 762 (854)
T ss_dssp CEE-------------CTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHHHH
T ss_pred Eec-------------cCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHHhcCeEEeCCCCCHHHH
Confidence 000 024445555443111 122222 3458899998 7889999999999
Q ss_pred HHHHHHhhcc
Q psy568 930 YQVAKEFTSK 939 (1614)
Q Consensus 930 ~~va~~~l~~ 939 (1614)
..++.+++..
T Consensus 763 ~~i~~~~l~~ 772 (854)
T 1qvr_A 763 RQIVEIQLSY 772 (854)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988864
No 9
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.71 E-value=2.8e-17 Score=217.98 Aligned_cols=426 Identities=19% Similarity=0.218 Sum_probs=219.7
Q ss_pred hcCCCEEEecCCCCchHHHHHHHHhcC---------CCCceEEEEcccCCCHHHHHhHhhcccceeecCCccccccccCC
Q psy568 414 AEHKPLVLCGPPGSGKTMTLLSALRAL---------PDMEVVSLNFSSATTPELLLKTFDHYCEYRKTPNGVILSPIQLG 484 (1614)
Q Consensus 414 ~~~~~vLL~Gp~GtGKT~lv~~~~~~l---------~~~~~~~i~~s~~t~~~~l~~~~~~~~~~~~~~~g~~~~p~~~g 484 (1614)
..+.|+||+||||||||++++.+++.+ .+..++.+++. ....|.++..+. + ++......
T Consensus 199 ~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~g-----~~~~G~~e~~l~------~-~~~~~~~~ 266 (758)
T 3pxi_A 199 RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG-----TKYRGEFEDRLK------K-VMDEIRQA 266 (758)
T ss_dssp SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC---------------CTTHH------H-HHHHHHTC
T ss_pred CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEeccc-----ccccchHHHHHH------H-HHHHHHhc
Confidence 346799999999999999999998765 24455555551 111121111110 1 11111123
Q ss_pred ceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCCCcccccccccEEEe
Q psy568 485 KWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLRHVPVIYV 564 (1614)
Q Consensus 485 k~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r~f~~i~i 564 (1614)
+..|+||| |+......|+..++.+ ++.+|+|+|+....+...++++|.|||.++.+
T Consensus 267 ~~~iLfiD----------~~~~~~~~L~~~l~~~--------------~v~~I~at~~~~~~~~~~~d~al~rRf~~i~v 322 (758)
T 3pxi_A 267 GNIILFID----------AAIDASNILKPSLARG--------------ELQCIGATTLDEYRKYIEKDAALERRFQPIQV 322 (758)
T ss_dssp CCCEEEEC----------C--------CCCTTSS--------------SCEEEEECCTTTTHHHHTTCSHHHHSEEEEEC
T ss_pred CCEEEEEc----------CchhHHHHHHHHHhcC--------------CEEEEeCCChHHHHHHhhccHHHHhhCcEEEe
Confidence 45789999 3334445555555532 57899999987533345789999999999999
Q ss_pred cCCChhHHHHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHHHhhcCCCCCCccccChhhHHHHhhhhhcc------c
Q psy568 565 DYPGETSLKQIYGTFSRAMLRLIPPLRGYADALTNAMVELYLASQEKFTQDMQPHYVYSPREMTRWVRGICEA------I 638 (1614)
Q Consensus 565 ~~p~~~~l~~I~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~hY~F~lRdl~~v~~~i~~~------~ 638 (1614)
+.|+.+++..|+..+...+..... ..+.+......+.+ ...+.+ ..|.+++...++...+.. .
T Consensus 323 ~~p~~~~~~~il~~~~~~~~~~~~--~~i~~~al~~~~~~----s~~~i~-----~~~~p~~ai~ll~~a~~~~~~~~~~ 391 (758)
T 3pxi_A 323 DQPSVDESIQILQGLRDRYEAHHR--VSITDDAIEAAVKL----SDRYIS-----DRFLPDKAIDLIDEAGSKVRLRSFT 391 (758)
T ss_dssp CCCCHHHHHHHHHHTTTTSGGGSS--CSCCHHHHHHHHHH----HHHSSC-----CSCTTHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHH----hhcccc-----cCcCCcHHHHHHHHHHHHHHhhccC
Confidence 999999999999876654322111 01122222222222 122211 122344444443332211 0
Q ss_pred CCCccCCHHHHHHHHHHhhhhhhcccCCChhHHHHHHH---HHH---HHHHhhcCCcchhhcccCceeccCCcCCCcccC
Q psy568 639 RPLESLTVEGLVRLWAHEALRLFQDRLVNDVERQWTNE---NID---AVAMKYFSNIDKEVLARPILYSNWLSKNYVPVG 712 (1614)
Q Consensus 639 ~~~~~~~~~~l~~lw~hE~~Rvf~DRL~~~~d~~~~~~---~l~---~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~v~ 712 (1614)
.|......+.-+..+.+|....... .|...... .+. ......-........ ....+++
T Consensus 392 ~p~~~~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~-----------~~~~~v~ 455 (758)
T 3pxi_A 392 TPPNLKELEQKLDEVRKEKDAAVQS-----QEFEKAASLRDTEQRLREQVEDTKKSWKEKQG-----------QENSEVT 455 (758)
T ss_dssp --CCTHHHHHHHHHHHHHHHHHHHH-----CCSHHHHHHHHHHHHHHHHHHHHHSGGGHHHH-----------CC---CC
T ss_pred CCcchhhHHHHHHHHHHHHHHHHhC-----cCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----------ccCcccC
Confidence 1111112223333344443322211 11111111 111 000000000000000 0001111
Q ss_pred hhHHHHHHHHHH-------HHH-------HhhhcccchhhHHHHHHHHHHHHHHhc-------cCCccEEEeecCCCChH
Q psy568 713 TTELREYVQARL-------KVF-------YEEELDVQLVLFDEVLDHVLRIDRIFR-------QPQGHLLLIGVSGAGKT 771 (1614)
Q Consensus 713 ~~~l~~~~~~~l-------~~~-------~~~~~~~~lvlf~~~i~hi~ri~Ril~-------~p~gh~LLvG~~GsGKt 771 (1614)
.+++...+.... ... ........++-.+.+++.+.+..+..+ .|.||+||+||+|+|||
T Consensus 456 ~~~i~~~v~~~~~ip~~~~~~~~~~~l~~l~~~l~~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT 535 (758)
T 3pxi_A 456 VDDIAMVVSSWTGVPVSKIAQTETDKLLNMENILHSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKT 535 (758)
T ss_dssp THHHHHHHHTTC-------CHHHHSCC-CHHHHHHTTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHH
T ss_pred HHHHHHHHHHHhCCChHHhhHHHHHHHHHHHHHHhCcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHH
Confidence 122211111000 000 001112245566778877777766543 55678999999999999
Q ss_pred HHHHHHHHHc---CCeEEEEEecCCCChhc-HHHHHHHHHHHhccCCCcEEEEEcCCcccccchHHHHHHhhccCCCCCC
Q psy568 772 TLSRFVAFMN---GLSVFQIRAHNKYTGAD-FDEDLRTVLRRSGCKNEKIAFLLDESNVLESGFLERMNTLLANGEIPGL 847 (1614)
Q Consensus 772 sl~rlaA~~~---~~~~~~i~~~~~~~~~d-f~~~lk~~l~~ag~~~~~~v~ll~d~~i~~~~~le~in~lL~~G~v~~L 847 (1614)
++++.+|..+ +.+++.++++...+... ..+.+...+++ ..+.++++||-+-.++.+...+..+|..|.+.+.
T Consensus 536 ~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~~~~l~~~~~~----~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~ 611 (758)
T 3pxi_A 536 ELARALAESIFGDEESMIRIDMSEYMEKHSTSGGQLTEKVRR----KPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDS 611 (758)
T ss_dssp HHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC---CHHHHHH----CSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC--
T ss_pred HHHHHHHHHhcCCCcceEEEechhcccccccccchhhHHHHh----CCCeEEEEeCccccCHHHHHHHHHHhccCeEEcC
Confidence 9999999875 67899998765433110 01222223332 2345888999988889999999999988876542
Q ss_pred CChhhHHHHHHHhHHHHHHcCCCCCCHHHHHHHHHHHHhhcceEEEEECCCCh-------hhHHHhhhCccccccc-eec
Q psy568 848 FEGDEYTTLMTQCKEGAQREGLMLDSNEELYKWFTQQVMKNLHVVFTMNPSSE-------GLKDRAATSPALFNRC-VLN 919 (1614)
Q Consensus 848 f~~eE~~~i~~~~~~~~~~~~~~~~s~~~l~~~f~~rv~~nlhivl~~sp~~~-------~~r~~~~~~PaL~~~~-~i~ 919 (1614)
- |... -..|..||++.+.... ..+.. .-|+|+++| .+.
T Consensus 612 ~-------------------g~~~-------------~~~~~~iI~ttn~~~~~~~~~~~~~~~~--f~p~l~~Rl~~~i 657 (758)
T 3pxi_A 612 K-------------------GRTV-------------DFRNTILIMTSNVGASEKDKVMGELKRA--FRPEFINRIDEII 657 (758)
T ss_dssp ----------------------CC-------------BCTTCEEEEEESSSTTCCHHHHHHHHHH--SCHHHHTTSSEEE
T ss_pred C-------------------CCEe-------------ccCCeEEEEeCCCChhhHHHHHHHHHhh--CCHHHHhhCCeEE
Confidence 1 1110 1137778887764221 11222 458999999 789
Q ss_pred ccCCCcHHHHHHHHHHhhccc
Q psy568 920 WFGDWSDTALYQVAKEFTSKI 940 (1614)
Q Consensus 920 wf~~W~~eaL~~va~~~l~~~ 940 (1614)
.|.+.+.+.+..++..++..+
T Consensus 658 ~~~~l~~~~~~~i~~~~l~~~ 678 (758)
T 3pxi_A 658 VFHSLEKKHLTEIVSLMSDQL 678 (758)
T ss_dssp ECC--CHHHHHHHHHHHHHHH
T ss_pred ecCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999887653
No 10
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.60 E-value=2.5e-14 Score=189.59 Aligned_cols=187 Identities=17% Similarity=0.259 Sum_probs=120.9
Q ss_pred CEEEecCCCCchHHHHHHHHhcC--CCCceEEEEcccCCCHHHHHhHhhcccceeecCCccccccccCCceEEEEeccCC
Q psy568 418 PLVLCGPPGSGKTMTLLSALRAL--PDMEVVSLNFSSATTPELLLKTFDHYCEYRKTPNGVILSPIQLGKWLVLFCDEIN 495 (1614)
Q Consensus 418 ~vLL~Gp~GtGKT~lv~~~~~~l--~~~~~~~i~~s~~t~~~~l~~~~~~~~~~~~~~~g~~~~p~~~gk~~vlfiDdin 495 (1614)
++||+||||||||++++.++..+ .+.+++.++|+......... .|.+......+...|+|||||+
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~-------------~~~l~~~~~~~~~~vl~lDEi~ 589 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTS-------------GGQLTEKVRRKPYSVVLLDAIE 589 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC----------------CHHHHHHCSSSEEEEECGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccccc-------------cchhhHHHHhCCCeEEEEeCcc
Confidence 59999999999999999988865 45789999998766532110 1222222222334589999998
Q ss_pred CCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCC-------CCCCCcccccccc-cEEEecCC
Q psy568 496 LPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDP-------GRKPLSHRFLRHV-PVIYVDYP 567 (1614)
Q Consensus 496 ~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~-------g~~~l~~r~~r~f-~~i~i~~p 567 (1614)
. .+..+...|.++++.|.+.+. .+......++.+|+|+|.+... .+..+.+.|++|| .++.+++|
T Consensus 590 ~------~~~~~~~~Ll~~le~g~~~~~-~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l 662 (758)
T 3pxi_A 590 K------AHPDVFNILLQVLEDGRLTDS-KGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFINRIDEIIVFHSL 662 (758)
T ss_dssp G------SCHHHHHHHHHHHHHSBCC------CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--
T ss_pred c------cCHHHHHHHHHHhccCeEEcC-CCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCC
Confidence 8 556688999999999887764 3444556789999999976421 0123789999999 68999999
Q ss_pred ChhHHHHHHHHHHHhhhhcchh---hhhhHHHHHHHHHHHHHHHHhhcCCCCCCccccChhhHHHHhhhhhc
Q psy568 568 GETSLKQIYGTFSRAMLRLIPP---LRGYADALTNAMVELYLASQEKFTQDMQPHYVYSPREMTRWVRGICE 636 (1614)
Q Consensus 568 ~~~~l~~I~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~hY~F~lRdl~~v~~~i~~ 636 (1614)
+.+++..|+..++..+...... ...+.+.....+.. ..+ .+.+|.|+|.++++..+.
T Consensus 663 ~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~------~~~------~~~~~~R~L~~~i~~~v~ 722 (758)
T 3pxi_A 663 EKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAE------EGV------DLEYGARPLRRAIQKHVE 722 (758)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHG------GGC------CTTTTTTTHHHHHHHHTH
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHH------hCC------CCCCCChHHHHHHHHHHH
Confidence 9999999988877654321110 00111222221111 112 456799999999987653
No 11
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.58 E-value=5.7e-13 Score=177.06 Aligned_cols=158 Identities=18% Similarity=0.288 Sum_probs=110.8
Q ss_pred CEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCCHHHHHhHhhcccceeec-CCccccccccCCceEEEEeccCCC
Q psy568 418 PLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTPELLLKTFDHYCEYRKT-PNGVILSPIQLGKWLVLFCDEINL 496 (1614)
Q Consensus 418 ~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~~~~l~~~~~~~~~~~~~-~~g~~~~p~~~gk~~vlfiDdin~ 496 (1614)
++||+||||||||++++.++..+ +.+++.++|+..+....+...+...-.+... ..|.+..........|+||||++.
T Consensus 490 ~~ll~G~~GtGKT~la~~la~~l-~~~~~~i~~s~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEi~~ 568 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLSKAL-GIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEK 568 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH-TCEEEEEEGGGCSSSSCCSSSCCCCSCSHHHHHTTHHHHHHHHCSSEEEEEETGGG
T ss_pred EEEEECCCCCcHHHHHHHHHHHh-cCCEEEEechhhcchhhHhhhcCCCCCCcCccccchHHHHHHhCCCcEEEEeCccc
Confidence 69999999999999999998877 6789999998776532221111110000000 001112222223358999999998
Q ss_pred CCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCC---------C-----------CCCCccccc
Q psy568 497 PDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDP---------G-----------RKPLSHRFL 556 (1614)
Q Consensus 497 p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~---------g-----------~~~l~~r~~ 556 (1614)
....+++.|.++++.|.+.+. .+......++.+|+|+|++... + +..+++.|+
T Consensus 569 ------~~~~~~~~Ll~~le~~~~~~~-~g~~~~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~ 641 (758)
T 1r6b_X 569 ------AHPDVFNILLQVMDNGTLTDN-NGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFR 641 (758)
T ss_dssp ------SCHHHHHHHHHHHHHSEEEET-TTEEEECTTEEEEEEECSSCC-----------------CHHHHHHHSCHHHH
T ss_pred ------cCHHHHHHHHHHhcCcEEEcC-CCCEEecCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHH
Confidence 455689999999999988875 3556666899999999985411 0 126789999
Q ss_pred ccc-cEEEecCCChhHHHHHHHHHHHhh
Q psy568 557 RHV-PVIYVDYPGETSLKQIYGTFSRAM 583 (1614)
Q Consensus 557 r~f-~~i~i~~p~~~~l~~I~~~~~~~~ 583 (1614)
+|| .++.+++|+.+++..|+..++..+
T Consensus 642 ~R~~~~i~~~~l~~~~~~~i~~~~l~~~ 669 (758)
T 1r6b_X 642 NRLDNIIWFDHLSTDVIHQVVDKFIVEL 669 (758)
T ss_dssp TTCSEEEECCCCCHHHHHHHHHHHHHHH
T ss_pred hhCCcceeeCCCCHHHHHHHHHHHHHHH
Confidence 999 588999999999999988877643
No 12
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.56 E-value=5e-15 Score=190.73 Aligned_cols=136 Identities=19% Similarity=0.312 Sum_probs=93.5
Q ss_pred CCCEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCC------HHHHHhHhhcccceeecCCccccccccCCceEEE
Q psy568 416 HKPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATT------PELLLKTFDHYCEYRKTPNGVILSPIQLGKWLVL 489 (1614)
Q Consensus 416 ~~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~------~~~l~~~~~~~~~~~~~~~g~~~~p~~~gk~~vl 489 (1614)
.++|||+||||||||++++.+++.+ +.+++.++++...+ ...+...|+ . +....++||
T Consensus 238 p~GILL~GPPGTGKT~LAraiA~el-g~~~~~v~~~~l~sk~~gese~~lr~lF~--------------~-A~~~~PsII 301 (806)
T 3cf2_A 238 PRGILLYGPPGTGKTLIARAVANET-GAFFFLINGPEIMSKLAGESESNLRKAFE--------------E-AEKNAPAII 301 (806)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHTTT-TCEEEEEEHHHHHSSCTTHHHHHHHHHHH--------------H-HTTSCSEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh-CCeEEEEEhHHhhcccchHHHHHHHHHHH--------------H-HHHcCCeEE
Confidence 4689999999999999999988877 77888888764322 112222221 1 123445999
Q ss_pred EeccCCCCCccccC-----cccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCCCcccccc--ccc-E
Q psy568 490 FCDEINLPDMDKYA-----TQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLR--HVP-V 561 (1614)
Q Consensus 490 fiDdin~p~~d~~g-----~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r--~f~-~ 561 (1614)
|||||+...+..-+ ...++..|..+++. +.. -.++.+|||+|.+. .|+++|+| ||. .
T Consensus 302 fIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg--~~~--------~~~V~VIaaTN~~d-----~LD~ALrR~GRFd~~ 366 (806)
T 3cf2_A 302 FIDELDAIAPKREKTHGEVERRIVSQLLTLMDG--LKQ--------RAHVIVMAATNRPN-----SIDPALRRFGRFDRE 366 (806)
T ss_dssp EEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHH--CCG--------GGCEEEEEECSSTT-----TSCTTTTSTTSSCEE
T ss_pred EEehhcccccccCCCCChHHHHHHHHHHHHHhc--ccc--------cCCEEEEEecCChh-----hcCHHHhCCcccceE
Confidence 99999964432211 12344444444443 111 13588999999886 69999998 887 7
Q ss_pred EEecCCChhHHHHHHHHHHHh
Q psy568 562 IYVDYPGETSLKQIYGTFSRA 582 (1614)
Q Consensus 562 i~i~~p~~~~l~~I~~~~~~~ 582 (1614)
|.++.|+.++...|++.+++.
T Consensus 367 I~i~~Pd~~~R~~IL~~~l~~ 387 (806)
T 3cf2_A 367 VDIGIPDATGRLEILQIHTKN 387 (806)
T ss_dssp EECCCCCHHHHHHHHHHTCSS
T ss_pred EecCCCCHHHHHHHHHHHhcC
Confidence 999999999999998876554
No 13
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.41 E-value=1.3e-11 Score=165.30 Aligned_cols=199 Identities=15% Similarity=0.216 Sum_probs=124.3
Q ss_pred CCEEEecCCCCchHHHHHHHHhcCC--CCceEEEEcccCCCHHHHHhHhhcccceeecC-CccccccccCCceEEEEecc
Q psy568 417 KPLVLCGPPGSGKTMTLLSALRALP--DMEVVSLNFSSATTPELLLKTFDHYCEYRKTP-NGVILSPIQLGKWLVLFCDE 493 (1614)
Q Consensus 417 ~~vLL~Gp~GtGKT~lv~~~~~~l~--~~~~~~i~~s~~t~~~~l~~~~~~~~~~~~~~-~g~~~~p~~~gk~~vlfiDd 493 (1614)
.++||+||||||||++++.+...+. +.+++.++|+...........+.....+.... .|.+..........|+||||
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~s~l~g~~~~~~G~~~~g~l~~~~~~~~~~vl~lDE 668 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDE 668 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGGGGC--------------CHHHHHHHCSSEEEEESS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHHHHHcCCCCCCcCccccchHHHHHHhCCCeEEEEec
Confidence 3789999999999999998887653 46789999987665422222121111111111 13333333223347899999
Q ss_pred CCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCC--------C-------------CCCCCc
Q psy568 494 INLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTD--------P-------------GRKPLS 552 (1614)
Q Consensus 494 in~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~--------~-------------g~~~l~ 552 (1614)
++. .+..++..|.++++.|.+.+. .+......++.+|+|+|.+.. + -+..+.
T Consensus 669 i~~------l~~~~~~~Ll~~l~~~~~~~~-~g~~vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~ 741 (854)
T 1qvr_A 669 IEK------AHPDVFNILLQILDDGRLTDS-HGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFR 741 (854)
T ss_dssp GGG------SCHHHHHHHHHHHTTTEECCS-SSCCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSC
T ss_pred ccc------cCHHHHHHHHHHhccCceECC-CCCEeccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCC
Confidence 987 455689999999999887653 445566678889999997310 0 033567
Q ss_pred cccccccc-EEEecCCChhHHHHHHHHHHHhhhhcchh---hhhhHHHHHHHHHHHHHHHHhhcCCCCCCcc--ccChhh
Q psy568 553 HRFLRHVP-VIYVDYPGETSLKQIYGTFSRAMLRLIPP---LRGYADALTNAMVELYLASQEKFTQDMQPHY--VYSPRE 626 (1614)
Q Consensus 553 ~r~~r~f~-~i~i~~p~~~~l~~I~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~hY--~F~lRd 626 (1614)
+.|++||. ++.+.+|+.+++..|+..++..+...... ...+.+.....+... +| .+|.|+
T Consensus 742 ~~l~~Rl~~~i~~~pl~~edi~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~L~~~--------------~~~~~gn~R~ 807 (854)
T 1qvr_A 742 PEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEKRISLELTEAAKDFLAER--------------GYDPVFGARP 807 (854)
T ss_dssp HHHHHTCSBCCBCCCCCHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHHH--------------HCBTTTBTST
T ss_pred HHHHHhcCeEEeCCCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHHHHc--------------CCCCCCChHH
Confidence 88888984 66778899999999988877644321100 011222222222111 34 579999
Q ss_pred HHHHhhhhhc
Q psy568 627 MTRWVRGICE 636 (1614)
Q Consensus 627 l~~v~~~i~~ 636 (1614)
|.++++..+.
T Consensus 808 L~~~i~~~~~ 817 (854)
T 1qvr_A 808 LRRVIQRELE 817 (854)
T ss_dssp HHHHHHHHTH
T ss_pred HHHHHHHHHH
Confidence 9999988653
No 14
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.30 E-value=7.9e-12 Score=161.14 Aligned_cols=143 Identities=24% Similarity=0.325 Sum_probs=86.3
Q ss_pred hcCCCEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCCHHHHHhHhhcccceeecCCccccccccCCceEEEEecc
Q psy568 414 AEHKPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTPELLLKTFDHYCEYRKTPNGVILSPIQLGKWLVLFCDE 493 (1614)
Q Consensus 414 ~~~~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~~~~l~~~~~~~~~~~~~~~g~~~~p~~~gk~~vlfiDd 493 (1614)
...+.+||+||||||||++++.++... +.+++.+..+ .+...+.+..++.- ..++.-++...++|+||||
T Consensus 509 ~~~~gvLl~GPPGtGKT~lAkaiA~e~-~~~f~~v~~~------~l~s~~vGese~~v---r~lF~~Ar~~~P~IifiDE 578 (806)
T 3cf2_A 509 TPSKGVLFYGPPGCGKTLLAKAIANEC-QANFISIKGP------ELLTMWFGESEANV---REIFDKARQAAPCVLFFDE 578 (806)
T ss_dssp CCCSCCEEESSTTSSHHHHHHHHHHTT-TCEEEECCHH------HHHTTTCSSCHHHH---HHHHHHHHTTCSEEEECSC
T ss_pred CCCceEEEecCCCCCchHHHHHHHHHh-CCceEEeccc------hhhccccchHHHHH---HHHHHHHHHcCCceeechh
Confidence 346789999999999999999888877 6677665443 33333222222111 0111112234569999999
Q ss_pred CCCCCcccc--------CcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCCCcccccc--ccc-EE
Q psy568 494 INLPDMDKY--------ATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLR--HVP-VI 562 (1614)
Q Consensus 494 in~p~~d~~--------g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r--~f~-~i 562 (1614)
++......- .+..++..|...+|. +-. ..++.+|||+|.|. .|+++++| ||. .|
T Consensus 579 iDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg--~~~--------~~~V~vi~aTN~p~-----~lD~AllRpgRfd~~i 643 (806)
T 3cf2_A 579 LDSIAKARGGNIGDGGGAADRVINQILTEMDG--MST--------KKNVFIIGATNRPD-----IIDPAILRPGRLDQLI 643 (806)
T ss_dssp GGGCC--------------CHHHHHHHHHHHS--SCS--------SSSEEEECC-CCSS-----SSCHHHHSTTTSCCEE
T ss_pred hhHHhhccCCCCCCCchHHHHHHHHHHHHHhC--CCC--------CCCEEEEEeCCCch-----hCCHhHcCCCcceEEE
Confidence 996433210 122344444444553 111 13688999999986 79999999 887 89
Q ss_pred EecCCChhHHHHHHHHHHH
Q psy568 563 YVDYPGETSLKQIYGTFSR 581 (1614)
Q Consensus 563 ~i~~p~~~~l~~I~~~~~~ 581 (1614)
+++.|+.++...||+.+++
T Consensus 644 ~v~lPd~~~R~~il~~~l~ 662 (806)
T 3cf2_A 644 YIPLPDEKSRVAILKANLR 662 (806)
T ss_dssp EC-----CHHHHTTTTTSS
T ss_pred EECCcCHHHHHHHHHHHhc
Confidence 9999999999999876554
No 15
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.28 E-value=3.3e-11 Score=143.75 Aligned_cols=160 Identities=18% Similarity=0.236 Sum_probs=117.2
Q ss_pred HHHHHHhcCCCEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCCHHHHHhHhhcccceeecCCccc-cccccCCce
Q psy568 408 LLYTWLAEHKPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTPELLLKTFDHYCEYRKTPNGVI-LSPIQLGKW 486 (1614)
Q Consensus 408 ll~~~l~~~~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~~~~l~~~~~~~~~~~~~~~g~~-~~p~~~gk~ 486 (1614)
.+...+..+.|+||+||||||||++++.+++.+ +.++..++|+..+++.++.+..... . ..|.+ ..+. .-..
T Consensus 38 ~l~~~l~~~~~vll~G~pGtGKT~la~~la~~~-~~~~~~i~~~~~~~~~~l~g~~~~~----~-~~~~~~~~~g-~l~~ 110 (331)
T 2r44_A 38 RLLIGICTGGHILLEGVPGLAKTLSVNTLAKTM-DLDFHRIQFTPDLLPSDLIGTMIYN----Q-HKGNFEVKKG-PVFS 110 (331)
T ss_dssp HHHHHHHHTCCEEEESCCCHHHHHHHHHHHHHT-TCCEEEEECCTTCCHHHHHEEEEEE----T-TTTEEEEEEC-TTCS
T ss_pred HHHHHHHcCCeEEEECCCCCcHHHHHHHHHHHh-CCCeEEEecCCCCChhhcCCceeec----C-CCCceEeccC-cccc
Confidence 344455668999999999999999999998877 6678889998888888776643211 0 01221 1110 0012
Q ss_pred EEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCCCcccccccccE-EEec
Q psy568 487 LVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLRHVPV-IYVD 565 (1614)
Q Consensus 487 ~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r~f~~-i~i~ 565 (1614)
.|+||||+|. .+......|.+.++.+.+... +.......++.+|+|+||....|...+++++++||.+ +.++
T Consensus 111 ~vl~iDEi~~------~~~~~~~~Ll~~l~~~~~~~~-g~~~~~~~~~~viat~np~~~~~~~~l~~~l~~Rf~~~i~i~ 183 (331)
T 2r44_A 111 NFILADEVNR------SPAKVQSALLECMQEKQVTIG-DTTYPLDNPFLVLATQNPVEQEGTYPLPEAQVDRFMMKIHLT 183 (331)
T ss_dssp SEEEEETGGG------SCHHHHHHHHHHHHHSEEEET-TEEEECCSSCEEEEEECTTCCSCCCCCCHHHHTTSSEEEECC
T ss_pred cEEEEEcccc------CCHHHHHHHHHHHhcCceeeC-CEEEECCCCEEEEEecCCCcccCcccCCHHHHhheeEEEEcC
Confidence 5888999998 455577888899998776652 2233344578999999988655777899999999995 9999
Q ss_pred CCChhHHHHHHHHHHH
Q psy568 566 YPGETSLKQIYGTFSR 581 (1614)
Q Consensus 566 ~p~~~~l~~I~~~~~~ 581 (1614)
.|+.++...|+.....
T Consensus 184 ~p~~~~~~~il~~~~~ 199 (331)
T 2r44_A 184 YLDKESELEVMRRVSN 199 (331)
T ss_dssp CCCHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHhccc
Confidence 9999999999877654
No 16
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.27 E-value=2.3e-12 Score=169.98 Aligned_cols=142 Identities=17% Similarity=0.235 Sum_probs=92.0
Q ss_pred hcCCCEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCCH--HHHHhHhhcccceeecCCccccccccCCceEEEEe
Q psy568 414 AEHKPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTP--ELLLKTFDHYCEYRKTPNGVILSPIQLGKWLVLFC 491 (1614)
Q Consensus 414 ~~~~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~~--~~l~~~~~~~~~~~~~~~g~~~~p~~~gk~~vlfi 491 (1614)
..+.+|||+||||||||++++.++..+ +.+++.++++...+. ....+.+. ..+-.|. .+...++|+
T Consensus 236 ~~~~~vLL~Gp~GtGKTtLarala~~l-~~~~i~v~~~~l~~~~~g~~~~~l~----------~vf~~a~-~~~p~il~i 303 (806)
T 1ypw_A 236 KPPRGILLYGPPGTGKTLIARAVANET-GAFFFLINGPEIMSKLAGESESNLR----------KAFEEAE-KNAPAIIFI 303 (806)
T ss_dssp CCCCEEEECSCTTSSHHHHHHHHHHTT-TCEEEEEEHHHHSSSSTTHHHHHHH----------HHHHHHH-HHCSEEEEE
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHc-CCcEEEEEchHhhhhhhhhHHHHHH----------HHHHHHH-hcCCcEEEe
Confidence 456789999999999999998888766 667788887543321 11111111 1111111 223478999
Q ss_pred ccCCCCCccccCc-----ccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCCCcccccc--ccc-EEE
Q psy568 492 DEINLPDMDKYAT-----QRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLR--HVP-VIY 563 (1614)
Q Consensus 492 Ddin~p~~d~~g~-----q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r--~f~-~i~ 563 (1614)
||++......... ..+.+.|..+++.. .. ..++.+|+|+|++. .+++.+.+ ||. .+.
T Consensus 304 DEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~--~~--------~~~v~vI~atn~~~-----~ld~al~r~gRf~~~i~ 368 (806)
T 1ypw_A 304 DELDAIAPKREKTHGEVERRIVSQLLTLMDGL--KQ--------RAHVIVMAATNRPN-----SIDPALRRFGRFDREVD 368 (806)
T ss_dssp ESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSS--CT--------TSCCEEEEECSCTT-----TSCTTTTSTTSSCEEEC
T ss_pred ccHHHhhhccccccchHHHHHHHHHHHHhhhh--cc--------cccEEEecccCCch-----hcCHHHhcccccccccc
Confidence 9998654432111 23445555555521 11 14688999999985 58888887 775 689
Q ss_pred ecCCChhHHHHHHHHHHHh
Q psy568 564 VDYPGETSLKQIYGTFSRA 582 (1614)
Q Consensus 564 i~~p~~~~l~~I~~~~~~~ 582 (1614)
++.|+.++...|+..+...
T Consensus 369 i~~p~~~~r~~il~~~~~~ 387 (806)
T 1ypw_A 369 IGIPDATGRLEILQIHTKN 387 (806)
T ss_dssp CCCCCHHHHHHHHHHTTTT
T ss_pred cCCCCHHHHHHHHHHHHhc
Confidence 9999999999998766543
No 17
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.16 E-value=1.4e-10 Score=137.12 Aligned_cols=142 Identities=23% Similarity=0.319 Sum_probs=97.4
Q ss_pred HhcCCCEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCCH------HHHHhHhhcccceeecCCccccccccCCce
Q psy568 413 LAEHKPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTP------ELLLKTFDHYCEYRKTPNGVILSPIQLGKW 486 (1614)
Q Consensus 413 l~~~~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~~------~~l~~~~~~~~~~~~~~~g~~~~p~~~gk~ 486 (1614)
+...+.+||+||||||||++++.++... +.+++.++++...+. ..+...|.. ++...+
T Consensus 179 i~~prGvLL~GPPGTGKTllAkAiA~e~-~~~f~~v~~s~l~sk~vGese~~vr~lF~~---------------Ar~~aP 242 (405)
T 4b4t_J 179 IAQPKGVILYGPPGTGKTLLARAVAHHT-DCKFIRVSGAELVQKYIGEGSRMVRELFVM---------------AREHAP 242 (405)
T ss_dssp CCCCCCEEEESCSSSSHHHHHHHHHHHH-TCEEEEEEGGGGSCSSTTHHHHHHHHHHHH---------------HHHTCS
T ss_pred CCCCCceEEeCCCCCCHHHHHHHHHHhh-CCCceEEEhHHhhccccchHHHHHHHHHHH---------------HHHhCC
Confidence 4456899999999999999999999887 788999998865542 223222221 112345
Q ss_pred EEEEeccCCCCCcccc-----CcccHHHHHHHHHHc-CceeeCCCCceEeecCeEEEEeecCCCCCCCCCCcccccc--c
Q psy568 487 LVLFCDEINLPDMDKY-----ATQRVISFLRQLIEQ-RGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLR--H 558 (1614)
Q Consensus 487 ~vlfiDdin~p~~d~~-----g~q~~lelLrqlld~-~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r--~ 558 (1614)
+|+||||++....... +.......+.+++.. .|+-. ..++.+|||+|.|. .|+++|+| |
T Consensus 243 ~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~--------~~~V~vIaATNrpd-----~LDpAllRpGR 309 (405)
T 4b4t_J 243 SIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFET--------SKNIKIIMATNRLD-----ILDPALLRPGR 309 (405)
T ss_dssp EEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTC--------CCCEEEEEEESCSS-----SSCHHHHSTTS
T ss_pred ceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCC--------CCCeEEEeccCChh-----hCCHhHcCCCc
Confidence 9999999996433211 112222233333321 11111 13688999999987 79999999 8
Q ss_pred cc-EEEecCCChhHHHHHHHHHHHhh
Q psy568 559 VP-VIYVDYPGETSLKQIYGTFSRAM 583 (1614)
Q Consensus 559 f~-~i~i~~p~~~~l~~I~~~~~~~~ 583 (1614)
|. .|+++.|+.++...|++.+++.+
T Consensus 310 fD~~I~i~lPd~~~R~~Il~~~~~~~ 335 (405)
T 4b4t_J 310 IDRKIEFPPPSVAARAEILRIHSRKM 335 (405)
T ss_dssp SCCEEECCCCCHHHHHHHHHHHHTTS
T ss_pred CceEEEcCCcCHHHHHHHHHHHhcCC
Confidence 87 89999999999999998776543
No 18
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.13 E-value=1.8e-10 Score=136.34 Aligned_cols=142 Identities=20% Similarity=0.290 Sum_probs=96.7
Q ss_pred hcCCCEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCCH------HHHHhHhhcccceeecCCccccccccCCceE
Q psy568 414 AEHKPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTP------ELLLKTFDHYCEYRKTPNGVILSPIQLGKWL 487 (1614)
Q Consensus 414 ~~~~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~~------~~l~~~~~~~~~~~~~~~g~~~~p~~~gk~~ 487 (1614)
...+.|||+||||||||++++.++... +.+++.++.+...+. ..+...|.. ++...++
T Consensus 214 ~~prGvLLyGPPGTGKTlLAkAiA~e~-~~~fi~v~~s~l~sk~vGesek~ir~lF~~---------------Ar~~aP~ 277 (437)
T 4b4t_I 214 KPPKGVILYGAPGTGKTLLAKAVANQT-SATFLRIVGSELIQKYLGDGPRLCRQIFKV---------------AGENAPS 277 (437)
T ss_dssp CCCSEEEEESSTTTTHHHHHHHHHHHH-TCEEEEEESGGGCCSSSSHHHHHHHHHHHH---------------HHHTCSE
T ss_pred CCCCCCceECCCCchHHHHHHHHHHHh-CCCEEEEEHHHhhhccCchHHHHHHHHHHH---------------HHhcCCc
Confidence 446889999999999999999999887 778888887755432 222222221 1123459
Q ss_pred EEEeccCCCCCcccc-----CcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCCCcccccc--ccc
Q psy568 488 VLFCDEINLPDMDKY-----ATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLR--HVP 560 (1614)
Q Consensus 488 vlfiDdin~p~~d~~-----g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r--~f~ 560 (1614)
|+||||++....... +.......+.+++..-.-++. ..++.+|||+|.+. .|+++|+| ||.
T Consensus 278 IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~-------~~~ViVIaATNrpd-----~LDpALlRpGRfD 345 (437)
T 4b4t_I 278 IVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDD-------RGDVKVIMATNKIE-----TLDPALIRPGRID 345 (437)
T ss_dssp EEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCC-------SSSEEEEEEESCST-----TCCTTSSCTTTEE
T ss_pred EEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCC-------CCCEEEEEeCCChh-----hcCHHHhcCCcee
Confidence 999999996543321 222223333333332111111 13688999999987 79999999 887
Q ss_pred -EEEecCCChhHHHHHHHHHHHhh
Q psy568 561 -VIYVDYPGETSLKQIYGTFSRAM 583 (1614)
Q Consensus 561 -~i~i~~p~~~~l~~I~~~~~~~~ 583 (1614)
.|+++.|+.++...|++.+++.+
T Consensus 346 ~~I~v~lPd~~~R~~Il~~~l~~~ 369 (437)
T 4b4t_I 346 RKILFENPDLSTKKKILGIHTSKM 369 (437)
T ss_dssp EEECCCCCCHHHHHHHHHHHHTTS
T ss_pred EEEEcCCcCHHHHHHHHHHHhcCC
Confidence 78999999999999998776643
No 19
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.11 E-value=1.7e-10 Score=136.24 Aligned_cols=199 Identities=15% Similarity=0.211 Sum_probs=127.7
Q ss_pred CCEEEecCCCCchHHHHHHHHhcCC--CCceEEEEcccCCCHHHHHhHhhcccceeecC-CccccccccCCceEEEEecc
Q psy568 417 KPLVLCGPPGSGKTMTLLSALRALP--DMEVVSLNFSSATTPELLLKTFDHYCEYRKTP-NGVILSPIQLGKWLVLFCDE 493 (1614)
Q Consensus 417 ~~vLL~Gp~GtGKT~lv~~~~~~l~--~~~~~~i~~s~~t~~~~l~~~~~~~~~~~~~~-~g~~~~p~~~gk~~vlfiDd 493 (1614)
.+++|+||||||||++++.+++.+. +.+++.++|+...........+.......... .|.+......+...++||||
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDE 127 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDA 127 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHHHHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEET
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHHHhcCCCCccccccccchHHHHHHhCCCeEEEEeC
Confidence 5899999999999999998887653 44688899987666443333332111110000 13333332223347899999
Q ss_pred CCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCC-----C----------------CCCCCc
Q psy568 494 INLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTD-----P----------------GRKPLS 552 (1614)
Q Consensus 494 in~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~-----~----------------g~~~l~ 552 (1614)
++. .+..+...|.++++.+.+.+. .+......++.+|+|+|++.. . ....++
T Consensus 128 i~~------l~~~~~~~Ll~~le~~~~~~~-~~~~~~~~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~ 200 (311)
T 4fcw_A 128 IEK------AHPDVFNILLQMLDDGRLTDS-HGRTVDFRNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFR 200 (311)
T ss_dssp GGG------SCHHHHHHHHHHHHHSEEECT-TSCEEECTTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSC
T ss_pred hhh------cCHHHHHHHHHHHhcCEEEcC-CCCEEECCCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCC
Confidence 998 445578888999998887753 445566678889999998310 0 023578
Q ss_pred cccccccc-EEEecCCChhHHHHHHHHHHHhhhhcchh---hhhhHHHHHHHHHHHHHHHHhhcCCCCCCcc--ccChhh
Q psy568 553 HRFLRHVP-VIYVDYPGETSLKQIYGTFSRAMLRLIPP---LRGYADALTNAMVELYLASQEKFTQDMQPHY--VYSPRE 626 (1614)
Q Consensus 553 ~r~~r~f~-~i~i~~p~~~~l~~I~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~hY--~F~lRd 626 (1614)
+.|.+||. ++.+++|+.+++..|+..++......... ...+.+.....+... +| ..|.|+
T Consensus 201 ~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~--------------~~~~~gn~R~ 266 (311)
T 4fcw_A 201 PEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAEKRISLELTEAAKDFLAER--------------GYDPVFGARP 266 (311)
T ss_dssp HHHHTTCSEEEECCCCCHHHHHHHHHHHTHHHHHHHHTTTCEEEECHHHHHHHHHH--------------SCBTTTBTTT
T ss_pred HHHHhcCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCcEEEeCHHHHHHHHHh--------------CCCccCCchh
Confidence 88999994 78889999999999988876654321110 011222222222110 34 579999
Q ss_pred HHHHhhhhhc
Q psy568 627 MTRWVRGICE 636 (1614)
Q Consensus 627 l~~v~~~i~~ 636 (1614)
|.++++..+.
T Consensus 267 L~~~i~~~~~ 276 (311)
T 4fcw_A 267 LRRVIQRELE 276 (311)
T ss_dssp HHHHHHHHTH
T ss_pred HHHHHHHHHH
Confidence 9999988664
No 20
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.09 E-value=2e-10 Score=132.17 Aligned_cols=211 Identities=18% Similarity=0.141 Sum_probs=122.9
Q ss_pred cchhhHHHHHHHHHhcCCCEEEecCCCCchHHHHHHHHhcCC--CCceEEEEcccCCCHHHHHhHhhccc----c-eeec
Q psy568 400 LDTVRHESLLYTWLAEHKPLVLCGPPGSGKTMTLLSALRALP--DMEVVSLNFSSATTPELLLKTFDHYC----E-YRKT 472 (1614)
Q Consensus 400 ~~t~r~~~ll~~~l~~~~~vLL~Gp~GtGKT~lv~~~~~~l~--~~~~~~i~~s~~t~~~~l~~~~~~~~----~-~~~~ 472 (1614)
....+....+..+...+.|+||+||||||||++++.+..... +.+++.++|+.... ..+...+-+.. . ....
T Consensus 13 ~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~-~~~~~~l~g~~~~~~~g~~~~ 91 (265)
T 2bjv_A 13 NSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNE-NLLDSELFGHEAGAFTGAQKR 91 (265)
T ss_dssp HHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCH-HHHHHHHHCCC---------C
T ss_pred HHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCCh-hHHHHHhcCCccccccccccc
Confidence 334455556667777899999999999999999999888764 35788999987643 22222221110 0 0000
Q ss_pred CCccccccccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCC--CCCC
Q psy568 473 PNGVILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDP--GRKP 550 (1614)
Q Consensus 473 ~~g~~~~p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~--g~~~ 550 (1614)
..|.+..+ ...++||||++.. +....+.|.++++.+.+... +.......++++|+|+|++... ....
T Consensus 92 ~~~~l~~a----~~~~l~lDEi~~l------~~~~q~~Ll~~l~~~~~~~~-g~~~~~~~~~~iI~atn~~~~~~~~~~~ 160 (265)
T 2bjv_A 92 HPGRFERA----DGGTLFLDELATA------PMMVQEKLLRVIEYGELERV-GGSQPLQVNVRLVCATNADLPAMVNEGT 160 (265)
T ss_dssp CCCHHHHT----TTSEEEEESGGGS------CHHHHHHHHHHHHHCEECCC-CC--CEECCCEEEEEESSCHHHHHHHTS
T ss_pred ccchhhhc----CCcEEEEechHhc------CHHHHHHHHHHHHhCCeecC-CCcccccCCeEEEEecCcCHHHHHHcCC
Confidence 11322222 1247889999984 33467778889998876432 2333344679999999985210 1224
Q ss_pred CcccccccccEEEecCCCh----hHHHHHHHHHHHhhhhcchh-h-hhhHHHHHHHHHHHHHHHHhhcCCCCCCccccCh
Q psy568 551 LSHRFLRHVPVIYVDYPGE----TSLKQIYGTFSRAMLRLIPP-L-RGYADALTNAMVELYLASQEKFTQDMQPHYVYSP 624 (1614)
Q Consensus 551 l~~r~~r~f~~i~i~~p~~----~~l~~I~~~~~~~~~~~~~~-~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~hY~F~l 624 (1614)
+.++|.+||..+.+..|.. +++..+...++......... . ..+.......+. . .+|..|+
T Consensus 161 ~~~~L~~Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a~~~L~--------~------~~~~gn~ 226 (265)
T 2bjv_A 161 FRADLLDALAFDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLL--------N------YRWPGNI 226 (265)
T ss_dssp SCHHHHHHHCSEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHHHHHHH--------H------SCCTTHH
T ss_pred ccHHHHHhhcCcEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHHHHHHH--------h------CCCCCCH
Confidence 6788999997655555544 45555555544432211100 0 011122122111 0 1567899
Q ss_pred hhHHHHhhhhhc
Q psy568 625 REMTRWVRGICE 636 (1614)
Q Consensus 625 Rdl~~v~~~i~~ 636 (1614)
|+|.++++.++.
T Consensus 227 reL~~~l~~~~~ 238 (265)
T 2bjv_A 227 RELKNVVERSVY 238 (265)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998764
No 21
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.08 E-value=2.6e-10 Score=137.34 Aligned_cols=141 Identities=24% Similarity=0.351 Sum_probs=95.7
Q ss_pred hcCCCEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCCH------HHHHhHhhcccceeecCCccccccccCCceE
Q psy568 414 AEHKPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTP------ELLLKTFDHYCEYRKTPNGVILSPIQLGKWL 487 (1614)
Q Consensus 414 ~~~~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~~------~~l~~~~~~~~~~~~~~~g~~~~p~~~gk~~ 487 (1614)
...+.|||+||||||||++++.++... +.+++.++++.-.+. ..+...|.. ++...++
T Consensus 213 ~~prGvLLyGPPGTGKTllAkAiA~e~-~~~f~~v~~s~l~~~~vGese~~ir~lF~~---------------A~~~aP~ 276 (434)
T 4b4t_M 213 RAPKGALMYGPPGTGKTLLARACAAQT-NATFLKLAAPQLVQMYIGEGAKLVRDAFAL---------------AKEKAPT 276 (434)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH-TCEEEEEEGGGGCSSCSSHHHHHHHHHHHH---------------HHHHCSE
T ss_pred CCCCeeEEECcCCCCHHHHHHHHHHHh-CCCEEEEehhhhhhcccchHHHHHHHHHHH---------------HHhcCCe
Confidence 346789999999999999999999887 788888988765431 222222211 0112348
Q ss_pred EEEeccCCCCCccc-----cCcccHHHHHHHHHHc-CceeeCCCCceEeecCeEEEEeecCCCCCCCCCCcccccc--cc
Q psy568 488 VLFCDEINLPDMDK-----YATQRVISFLRQLIEQ-RGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLR--HV 559 (1614)
Q Consensus 488 vlfiDdin~p~~d~-----~g~q~~lelLrqlld~-~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r--~f 559 (1614)
|+||||++...... -|...+...+.+++.. .|+-. . .++.+|||+|.|. .|+++|+| ||
T Consensus 277 IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~-~-------~~ViVIaaTNrp~-----~LD~AllRpGRf 343 (434)
T 4b4t_M 277 IIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSS-D-------DRVKVLAATNRVD-----VLDPALLRSGRL 343 (434)
T ss_dssp EEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCS-S-------CSSEEEEECSSCC-----CCCTTTCSTTSE
T ss_pred EEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCC-C-------CCEEEEEeCCCch-----hcCHhHhcCCce
Confidence 99999999532221 1222232333333332 12211 1 3588999999987 69999999 88
Q ss_pred c-EEEecCCChhHHHHHHHHHHHhh
Q psy568 560 P-VIYVDYPGETSLKQIYGTFSRAM 583 (1614)
Q Consensus 560 ~-~i~i~~p~~~~l~~I~~~~~~~~ 583 (1614)
. .|+++.|+.++...|++.+++.+
T Consensus 344 D~~I~i~lPd~~~R~~Il~~~~~~~ 368 (434)
T 4b4t_M 344 DRKIEFPLPSEDSRAQILQIHSRKM 368 (434)
T ss_dssp EEEEECCCCCHHHHHHHHHHHHHHS
T ss_pred eEEEEeCCcCHHHHHHHHHHHhcCC
Confidence 7 78999999999999998877654
No 22
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.05 E-value=3e-10 Score=136.96 Aligned_cols=139 Identities=19% Similarity=0.322 Sum_probs=95.3
Q ss_pred hcCCCEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCCH------HHHHhHhhcccceeecCCccccccccCCceE
Q psy568 414 AEHKPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTP------ELLLKTFDHYCEYRKTPNGVILSPIQLGKWL 487 (1614)
Q Consensus 414 ~~~~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~~------~~l~~~~~~~~~~~~~~~g~~~~p~~~gk~~ 487 (1614)
...+.|||+||||||||++++.++..+ +.+++.++++...+. ..+...+.. +....++
T Consensus 213 ~~prGvLL~GPPGtGKTllAkAiA~e~-~~~~~~v~~s~l~sk~~Gese~~ir~~F~~---------------A~~~~P~ 276 (437)
T 4b4t_L 213 KPPKGVLLYGPPGTGKTLLAKAVAATI-GANFIFSPASGIVDKYIGESARIIREMFAY---------------AKEHEPC 276 (437)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH-TCEEEEEEGGGTCCSSSSHHHHHHHHHHHH---------------HHHSCSE
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh-CCCEEEEehhhhccccchHHHHHHHHHHHH---------------HHhcCCc
Confidence 346889999999999999999999887 788999988765541 122222211 1123459
Q ss_pred EEEeccCCCCCcccc-----Cccc---HHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCCCccccccc-
Q psy568 488 VLFCDEINLPDMDKY-----ATQR---VISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLRH- 558 (1614)
Q Consensus 488 vlfiDdin~p~~d~~-----g~q~---~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r~- 558 (1614)
|+||||++....... +... ++..|...+|. +-. ..++.+|||+|.|. .|+++|+|+
T Consensus 277 IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg--~~~--------~~~vivI~ATNrp~-----~LDpAllRpG 341 (437)
T 4b4t_L 277 IIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDG--FDN--------LGQTKIIMATNRPD-----TLDPALLRPG 341 (437)
T ss_dssp EEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHS--SSC--------TTSSEEEEEESSTT-----SSCTTTTSTT
T ss_pred eeeeecccccccccccCCCCcchHHHHHHHHHHHHhhc--ccC--------CCCeEEEEecCCch-----hhCHHHhCCC
Confidence 999999996543321 1112 22222233342 111 13578999999987 699999985
Q ss_pred -cc-EEEecCCChhHHHHHHHHHHHhh
Q psy568 559 -VP-VIYVDYPGETSLKQIYGTFSRAM 583 (1614)
Q Consensus 559 -f~-~i~i~~p~~~~l~~I~~~~~~~~ 583 (1614)
|. .|+++.|+.++...||+.++..+
T Consensus 342 RfD~~I~i~lPd~~~R~~Il~~~~~~~ 368 (437)
T 4b4t_L 342 RLDRKVEIPLPNEAGRLEIFKIHTAKV 368 (437)
T ss_dssp SEEEEECCCCCCHHHHHHHHHHHHHTS
T ss_pred ccceeeecCCcCHHHHHHHHHHHhcCC
Confidence 76 78999999999999998877654
No 23
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.04 E-value=7.1e-10 Score=132.70 Aligned_cols=142 Identities=24% Similarity=0.374 Sum_probs=96.9
Q ss_pred HhcCCCEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCCH------HHHHhHhhcccceeecCCccccccccCCce
Q psy568 413 LAEHKPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTP------ELLLKTFDHYCEYRKTPNGVILSPIQLGKW 486 (1614)
Q Consensus 413 l~~~~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~~------~~l~~~~~~~~~~~~~~~g~~~~p~~~gk~ 486 (1614)
+...+.|||+||||||||++++.++..+ +.+++.++++.-.+. ..+...|.. ++...+
T Consensus 240 i~pprGILLyGPPGTGKTlLAkAiA~e~-~~~fi~vs~s~L~sk~vGesek~ir~lF~~---------------Ar~~aP 303 (467)
T 4b4t_H 240 IDPPKGILLYGPPGTGKTLCARAVANRT-DATFIRVIGSELVQKYVGEGARMVRELFEM---------------ARTKKA 303 (467)
T ss_dssp CCCCSEEEECSCTTSSHHHHHHHHHHHH-TCEEEEEEGGGGCCCSSSHHHHHHHHHHHH---------------HHHTCS
T ss_pred CCCCCceEeeCCCCCcHHHHHHHHHhcc-CCCeEEEEhHHhhcccCCHHHHHHHHHHHH---------------HHhcCC
Confidence 4567899999999999999999999887 778888988765431 222222221 112345
Q ss_pred EEEEeccCCCCCcccc--C---cccHHHHHHHHHHc-CceeeCCCCceEeecCeEEEEeecCCCCCCCCCCcccccc--c
Q psy568 487 LVLFCDEINLPDMDKY--A---TQRVISFLRQLIEQ-RGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLR--H 558 (1614)
Q Consensus 487 ~vlfiDdin~p~~d~~--g---~q~~lelLrqlld~-~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r--~ 558 (1614)
+|+||||++....... + .......+.+++.. .|+.. ..++.+|||+|.+. .|+++|+| |
T Consensus 304 ~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~--------~~~ViVIaATNrpd-----~LDpALlRpGR 370 (467)
T 4b4t_H 304 CIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDP--------RGNIKVMFATNRPN-----TLDPALLRPGR 370 (467)
T ss_dssp EEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCC--------TTTEEEEEECSCTT-----SBCHHHHSTTT
T ss_pred ceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCC--------CCcEEEEeCCCCcc-----cCChhhhcccc
Confidence 9999999996543321 1 11222222233321 12111 13688999999987 79999999 8
Q ss_pred cc-EEEecCCChhHHHHHHHHHHHhh
Q psy568 559 VP-VIYVDYPGETSLKQIYGTFSRAM 583 (1614)
Q Consensus 559 f~-~i~i~~p~~~~l~~I~~~~~~~~ 583 (1614)
|. .|+++.|+.++...||+.+++.+
T Consensus 371 FD~~I~i~lPd~~~R~~Ilk~~l~~~ 396 (467)
T 4b4t_H 371 IDRKVEFSLPDLEGRANIFRIHSKSM 396 (467)
T ss_dssp CCEEECCCCCCHHHHHHHHHHHHTTS
T ss_pred ccEEEEeCCcCHHHHHHHHHHHhcCC
Confidence 97 78999999999999998776643
No 24
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.00 E-value=4.9e-10 Score=134.88 Aligned_cols=139 Identities=20% Similarity=0.327 Sum_probs=93.9
Q ss_pred hcCCCEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCCH------HHHHhHhhcccceeecCCccccccccCCceE
Q psy568 414 AEHKPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTP------ELLLKTFDHYCEYRKTPNGVILSPIQLGKWL 487 (1614)
Q Consensus 414 ~~~~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~~------~~l~~~~~~~~~~~~~~~g~~~~p~~~gk~~ 487 (1614)
...+.+||+||||||||++++.++..+ +.+++.++++...+. ..+...|.. ++...++
T Consensus 204 ~~prGiLL~GPPGtGKT~lakAiA~~~-~~~~~~v~~~~l~~~~~Ge~e~~ir~lF~~---------------A~~~aP~ 267 (428)
T 4b4t_K 204 DPPRGVLLYGPPGTGKTMLVKAVANST-KAAFIRVNGSEFVHKYLGEGPRMVRDVFRL---------------ARENAPS 267 (428)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHHHH-TCEEEEEEGGGTCCSSCSHHHHHHHHHHHH---------------HHHTCSE
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh-CCCeEEEecchhhccccchhHHHHHHHHHH---------------HHHcCCC
Confidence 345779999999999999999999887 788999998865432 223222221 1123459
Q ss_pred EEEeccCCCCCccc-----cCcc---cHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCCCcccccc--
Q psy568 488 VLFCDEINLPDMDK-----YATQ---RVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLR-- 557 (1614)
Q Consensus 488 vlfiDdin~p~~d~-----~g~q---~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r-- 557 (1614)
|+||||++...... .+.. .++.-|...+|. +... .++.+|||+|.+. .|+++|+|
T Consensus 268 IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg--~~~~--------~~v~vI~aTN~~~-----~LD~AllRpG 332 (428)
T 4b4t_K 268 IIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDG--FDQS--------TNVKVIMATNRAD-----TLDPALLRPG 332 (428)
T ss_dssp EEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHH--SCSS--------CSEEEEEEESCSS-----SCCHHHHSSS
T ss_pred eeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhC--CCCC--------CCEEEEEecCChh-----hcChhhhcCC
Confidence 99999999432211 1111 222222233332 2221 3588999999986 79999999
Q ss_pred ccc-EEEec-CCChhHHHHHHHHHHHhh
Q psy568 558 HVP-VIYVD-YPGETSLKQIYGTFSRAM 583 (1614)
Q Consensus 558 ~f~-~i~i~-~p~~~~l~~I~~~~~~~~ 583 (1614)
||. .|.+| .|+.++...|++.+++.+
T Consensus 333 Rfd~~I~~p~lPd~~~R~~Il~~~~~~~ 360 (428)
T 4b4t_K 333 RLDRKIEFPSLRDRRERRLIFGTIASKM 360 (428)
T ss_dssp SEEEEEECCSSCCHHHHHHHHHHHHHSS
T ss_pred cceEEEEcCCCCCHHHHHHHHHHHhcCC
Confidence 887 68886 799999999998877643
No 25
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.00 E-value=4.3e-10 Score=142.01 Aligned_cols=197 Identities=17% Similarity=0.193 Sum_probs=111.1
Q ss_pred cCCCEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCCHHHHHhHhhcccceeecCCccc---cccccCCceEEEEe
Q psy568 415 EHKPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTPELLLKTFDHYCEYRKTPNGVI---LSPIQLGKWLVLFC 491 (1614)
Q Consensus 415 ~~~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~~~~l~~~~~~~~~~~~~~~g~~---~~p~~~gk~~vlfi 491 (1614)
.+.+++|+||||||||++++.++..+ +.++..++++...+...+.+......... .|.+ +.... ....|+|+
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l-~~~~~~i~~~~~~~~~~~~g~~~~~ig~~---~~~~~~~~~~a~-~~~~vl~l 181 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSL-GRKFVRISLGGVRDESEIRGHRRTYVGAM---PGRIIQGMKKAG-KLNPVFLL 181 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHH-TCEEEEECCCC-----------------------CHHHHHHTTC-SSSEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhc-CCCeEEEEecccchhhhhhhHHHHHhccC---chHHHHHHHHhh-ccCCEEEE
Confidence 36789999999999999999888776 66788888876555444433221111110 0111 11111 12248999
Q ss_pred ccCCCCCccccCcccHHHHHHHHHHcCc---eeeCCCCceEeecCeEEEEeecCCCCCCCCCCcccccccccEEEecCCC
Q psy568 492 DEINLPDMDKYATQRVISFLRQLIEQRG---FYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLRHVPVIYVDYPG 568 (1614)
Q Consensus 492 Ddin~p~~d~~g~q~~lelLrqlld~~~---~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r~f~~i~i~~p~ 568 (1614)
||++....+.- ..+.+.|.++++.+. +.+..........++.||+|+|++. .++++|++||.+|.++.|+
T Consensus 182 DEid~l~~~~~--~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~-----~l~~aL~~R~~vi~~~~~~ 254 (543)
T 3m6a_A 182 DEIDKMSSDFR--GDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLA-----TIPGPLRDRMEIINIAGYT 254 (543)
T ss_dssp EESSSCC-----------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTT-----TSCHHHHHHEEEEECCCCC
T ss_pred hhhhhhhhhhc--cCHHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCccc-----cCCHHHHhhcceeeeCCCC
Confidence 99998655421 123445556665432 2222222333446899999999975 7999999999999999999
Q ss_pred hhHHHHHHHHHHHhh-hh---cchhhhhhHHHHHHHHHHHHHHHHhhcCCCCCCccccChhhHHHHhhhhhc
Q psy568 569 ETSLKQIYGTFSRAM-LR---LIPPLRGYADALTNAMVELYLASQEKFTQDMQPHYVYSPREMTRWVRGICE 636 (1614)
Q Consensus 569 ~~~l~~I~~~~~~~~-~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~hY~F~lRdl~~v~~~i~~ 636 (1614)
.++...|+..++... .. ....-..+.+.....++..| .+..|.|+|.+.+..+++
T Consensus 255 ~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~-------------~~~~~vR~L~~~i~~~~~ 313 (543)
T 3m6a_A 255 EIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYY-------------TREAGVRSLERQLAAICR 313 (543)
T ss_dssp HHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHH-------------CCCSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhC-------------ChhhchhHHHHHHHHHHH
Confidence 999999988765321 11 10100111222333322211 233589999998888765
No 26
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.99 E-value=3.8e-09 Score=126.28 Aligned_cols=137 Identities=16% Similarity=0.176 Sum_probs=101.9
Q ss_pred CCEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCCHHHHHhHhhcccceeecCCccccccccCCceEEEEeccCCC
Q psy568 417 KPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTPELLLKTFDHYCEYRKTPNGVILSPIQLGKWLVLFCDEINL 496 (1614)
Q Consensus 417 ~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~~~~l~~~~~~~~~~~~~~~g~~~~p~~~gk~~vlfiDdin~ 496 (1614)
.++||+||||||||++++.+++.+ +.+++.++++.......+.+.+.. .++..++||||++.
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~~-~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~vl~lDEi~~ 117 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYEM-SANIKTTAAPMIEKSGDLAAILTN-----------------LSEGDILFIDEIHR 117 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHT-TCCEEEEEGGGCCSHHHHHHHHHT-----------------CCTTCEEEEETGGG
T ss_pred CeEEEECcCCCCHHHHHHHHHHHh-CCCeEEecchhccchhHHHHHHHh-----------------ccCCCEEEEechhh
Confidence 699999999999999999998876 778899999887776666555432 12336888999997
Q ss_pred CCccccCcccHHHHHHHHHHcCceeeCC------CCceEeecCeEEEEeecCCCCCCCCCCcccccccc-cEEEecCCCh
Q psy568 497 PDMDKYATQRVISFLRQLIEQRGFYRPA------DKQWVSLERIQCVGACNPPTDPGRKPLSHRFLRHV-PVIYVDYPGE 569 (1614)
Q Consensus 497 p~~d~~g~q~~lelLrqlld~~~~~~~~------~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r~f-~~i~i~~p~~ 569 (1614)
. +....+.|+..++.+.+..-. .......+++.+|+|+|..+ .+++.+.+|| .++.++.|+.
T Consensus 118 l------~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~-----~l~~~L~~R~~~~i~l~~~~~ 186 (338)
T 3pfi_A 118 L------SPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAG-----MLSNPLRDRFGMQFRLEFYKD 186 (338)
T ss_dssp C------CHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGG-----GSCHHHHTTCSEEEECCCCCH
T ss_pred c------CHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCcc-----ccCHHHHhhcCEEeeCCCcCH
Confidence 3 344677788888876643210 11112334689999999865 4889999999 6899999999
Q ss_pred hHHHHHHHHHHHh
Q psy568 570 TSLKQIYGTFSRA 582 (1614)
Q Consensus 570 ~~l~~I~~~~~~~ 582 (1614)
+++..|+..+...
T Consensus 187 ~e~~~il~~~~~~ 199 (338)
T 3pfi_A 187 SELALILQKAALK 199 (338)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999998776553
No 27
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=98.98 E-value=3.9e-10 Score=131.33 Aligned_cols=147 Identities=16% Similarity=0.187 Sum_probs=88.9
Q ss_pred CCEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCC------HHHHHhHhhcccceeecCCccccccccCCceEEEE
Q psy568 417 KPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATT------PELLLKTFDHYCEYRKTPNGVILSPIQLGKWLVLF 490 (1614)
Q Consensus 417 ~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~------~~~l~~~~~~~~~~~~~~~g~~~~p~~~gk~~vlf 490 (1614)
+.+||+||||||||++++.+++.+ +.+++.++++...+ +..+...+..... . .+.++.+|+|
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~l-~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~--------~---~~~~~~~vl~ 104 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRKM-GINPIMMSAGELESGNAGEPAKLIRQRYREAAE--------I---IRKGNMCCLF 104 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHH-TCCCEEEEHHHHHCC---HHHHHHHHHHHHHHH--------H---HTTSSCCCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh-CCCEEEEeHHHhhhccCchhHHHHHHHHHHHHH--------H---HhcCCCeEEE
Confidence 568999999999999999999888 78888898764322 1112222211100 0 0124458899
Q ss_pred eccCCCCCccccC-------cccHHHHHHHHHHcCceeeCCCC-ceEeecCeEEEEeecCCCCCCCCCCcccccc--ccc
Q psy568 491 CDEINLPDMDKYA-------TQRVISFLRQLIEQRGFYRPADK-QWVSLERIQCVGACNPPTDPGRKPLSHRFLR--HVP 560 (1614)
Q Consensus 491 iDdin~p~~d~~g-------~q~~lelLrqlld~~~~~~~~~~-~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r--~f~ 560 (1614)
||||+......-+ .+.+...|.+++|........+. ......++.+|+|+|.+. .++++|+| ||.
T Consensus 105 iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~-----~ld~al~R~~R~d 179 (293)
T 3t15_A 105 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFS-----TLYAPLIRDGRME 179 (293)
T ss_dssp EECCC--------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCC-----C--CHHHHHHHEE
T ss_pred EechhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcc-----cCCHHHhCCCCCc
Confidence 9999875442212 22466888899886553332111 122345789999999875 69999997 676
Q ss_pred EEEecCCChhHHHHHHHHHHH
Q psy568 561 VIYVDYPGETSLKQIYGTFSR 581 (1614)
Q Consensus 561 ~i~i~~p~~~~l~~I~~~~~~ 581 (1614)
.+. ..|+.++...|++.++.
T Consensus 180 ~~i-~~P~~~~r~~Il~~~~~ 199 (293)
T 3t15_A 180 KFY-WAPTREDRIGVCTGIFR 199 (293)
T ss_dssp EEE-ECCCHHHHHHHHHHHHG
T ss_pred eeE-eCcCHHHHHHHHHHhcc
Confidence 433 25799999999886654
No 28
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.97 E-value=1.2e-09 Score=128.95 Aligned_cols=140 Identities=20% Similarity=0.286 Sum_probs=93.4
Q ss_pred CCCEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCCH------HHHHhHhhcccceeecCCccccccccCCceEEE
Q psy568 416 HKPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTP------ELLLKTFDHYCEYRKTPNGVILSPIQLGKWLVL 489 (1614)
Q Consensus 416 ~~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~~------~~l~~~~~~~~~~~~~~~g~~~~p~~~gk~~vl 489 (1614)
.+++||+||||||||++++.+++.+.+.+++.++++...+. ..+...+. .+..++..|+
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~~~~g~~~~~~~~lf~---------------~a~~~~~~vl 109 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQ---------------LARENKPSII 109 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCCSSCCSCHHHHHHHHH---------------HHHHTSSEEE
T ss_pred CceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHhhhhhHHHHHHHHHHH---------------HHHhcCCcEE
Confidence 47899999999999999999998886778888888754321 11222221 1112345899
Q ss_pred EeccCCCCCccccC--cccHHHHHHHHHHc-CceeeCCCCceEeecCeEEEEeecCCCCCCCCCCcccccccc-cEEEec
Q psy568 490 FCDEINLPDMDKYA--TQRVISFLRQLIEQ-RGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLRHV-PVIYVD 565 (1614)
Q Consensus 490 fiDdin~p~~d~~g--~q~~lelLrqlld~-~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r~f-~~i~i~ 565 (1614)
||||++........ ......++.+++.. .++-. ...++.+|+|+|.+. .++++++||| ..++++
T Consensus 110 ~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~-------~~~~v~vI~atn~~~-----~ld~al~rRf~~~i~i~ 177 (322)
T 1xwi_A 110 FIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGV-------DNDGILVLGATNIPW-----VLDSAIRRRFEKRIYIP 177 (322)
T ss_dssp EEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSS-------CCTTEEEEEEESCTT-----TSCHHHHHTCCEEEECC
T ss_pred EeecHHHhccccccccchHHHHHHHHHHHHHhcccc-------cCCCEEEEEecCCcc-----cCCHHHHhhcCeEEEeC
Confidence 99999975333211 11122233333321 11110 114689999999985 6999999999 589999
Q ss_pred CCChhHHHHHHHHHHHh
Q psy568 566 YPGETSLKQIYGTFSRA 582 (1614)
Q Consensus 566 ~p~~~~l~~I~~~~~~~ 582 (1614)
.|+.++...|+..++..
T Consensus 178 ~P~~~~r~~il~~~l~~ 194 (322)
T 1xwi_A 178 LPEPHARAAMFKLHLGT 194 (322)
T ss_dssp CCCHHHHHHHHHHHHTT
T ss_pred CcCHHHHHHHHHHHHhc
Confidence 99999999998877654
No 29
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=98.96 E-value=2e-09 Score=125.86 Aligned_cols=212 Identities=14% Similarity=0.161 Sum_probs=122.8
Q ss_pred cchhhHHHHHHHHHhcCCCEEEecCCCCchHHHHHHHHhcCC--CCceEEEEcccCCCHHHHHhHhhccc----c-eeec
Q psy568 400 LDTVRHESLLYTWLAEHKPLVLCGPPGSGKTMTLLSALRALP--DMEVVSLNFSSATTPELLLKTFDHYC----E-YRKT 472 (1614)
Q Consensus 400 ~~t~r~~~ll~~~l~~~~~vLL~Gp~GtGKT~lv~~~~~~l~--~~~~~~i~~s~~t~~~~l~~~~~~~~----~-~~~~ 472 (1614)
+...+....+..+...+.||||+||||||||++++.+..... +.+++.++|+.... ..+...+-+.. . ....
T Consensus 9 ~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~-~l~~~~lfg~~~g~~tg~~~~ 87 (304)
T 1ojl_A 9 PAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNE-SLLESELFGHEKGAFTGADKR 87 (304)
T ss_dssp HHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCH-HHHHHHHTCCCSSCCC---CC
T ss_pred HHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCCh-HHHHHHhcCccccccCchhhh
Confidence 344455566666777889999999999999999998887653 56788999986543 22222221110 0 0000
Q ss_pred CCccccccccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCC--CCCC
Q psy568 473 PNGVILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDP--GRKP 550 (1614)
Q Consensus 473 ~~g~~~~p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~--g~~~ 550 (1614)
..|.+-.+ ...++||||++... ......|..+++.+.+... +.......++++|+|+|++-.. ....
T Consensus 88 ~~g~~~~a----~~g~L~LDEi~~l~------~~~q~~Ll~~l~~~~~~~~-g~~~~~~~~~riI~atn~~l~~~v~~g~ 156 (304)
T 1ojl_A 88 REGRFVEA----DGGTLFLDEIGDIS------PLMQVRLLRAIQEREVQRV-GSNQTISVDVRLIAATHRDLAEEVSAGR 156 (304)
T ss_dssp CCCHHHHH----TTSEEEEESCTTCC------HHHHHHHHHHHHSSBCCBT-TBCCCCBCCCEEEEEESSCHHHHHHHTS
T ss_pred hcCHHHhc----CCCEEEEeccccCC------HHHHHHHHHHHhcCEeeec-CCcccccCCeEEEEecCccHHHHHHhCC
Confidence 11222111 12478899999843 3355666677887665432 2222334579999999986200 0114
Q ss_pred CcccccccccEEEecCCC----hhHHHHHHHHHHHhhhhcch-hhhhhHHHHHHHHHHHHHHHHhhcCCCCCCccccChh
Q psy568 551 LSHRFLRHVPVIYVDYPG----ETSLKQIYGTFSRAMLRLIP-PLRGYADALTNAMVELYLASQEKFTQDMQPHYVYSPR 625 (1614)
Q Consensus 551 l~~r~~r~f~~i~i~~p~----~~~l~~I~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~hY~F~lR 625 (1614)
+.++|..||.++.+..|. .+++..++..++..+..... ....+.......+.. . +|.-|+|
T Consensus 157 fr~~L~~Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~--------~------~wpGnvR 222 (304)
T 1ojl_A 157 FRQDLYYRLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIH--------Y------DWPGNIR 222 (304)
T ss_dssp SCHHHHHHHSSEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHH--------C------CCSSHHH
T ss_pred cHHHHHhhcCeeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHHc--------C------CCCCCHH
Confidence 567888898776655555 45666676665554321110 001122222221111 1 4567999
Q ss_pred hHHHHhhhhhcc
Q psy568 626 EMTRWVRGICEA 637 (1614)
Q Consensus 626 dl~~v~~~i~~~ 637 (1614)
+|.++++.++..
T Consensus 223 eL~~~l~~~~~~ 234 (304)
T 1ojl_A 223 ELENAIERAVVL 234 (304)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999987653
No 30
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.96 E-value=9.3e-09 Score=114.56 Aligned_cols=142 Identities=19% Similarity=0.294 Sum_probs=100.6
Q ss_pred HHHHHHhcC--CCEEEecCCCCchHHHHHHHHhcCC----CCceEEEEcccCCCHHHHHhHhhcccceeecCCccccccc
Q psy568 408 LLYTWLAEH--KPLVLCGPPGSGKTMTLLSALRALP----DMEVVSLNFSSATTPELLLKTFDHYCEYRKTPNGVILSPI 481 (1614)
Q Consensus 408 ll~~~l~~~--~~vLL~Gp~GtGKT~lv~~~~~~l~----~~~~~~i~~s~~t~~~~l~~~~~~~~~~~~~~~g~~~~p~ 481 (1614)
.+..++..+ .+++|+||+|||||++++.+++.+. ...++.++++...+...+...+....... +.
T Consensus 28 ~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~ 98 (226)
T 2chg_A 28 RLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFARTA---------PI 98 (226)
T ss_dssp HHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHHHHHHHHHTSC---------CS
T ss_pred HHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHHHHHHHHhccc---------CC
Confidence 444455544 4699999999999999998887642 23467788877777666655443322111 11
Q ss_pred cCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCCCcccccccccE
Q psy568 482 QLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLRHVPV 561 (1614)
Q Consensus 482 ~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r~f~~ 561 (1614)
..++..+++|||++.. .....+.|+.+++... .++.+|+++|.+. .+.+++.+||..
T Consensus 99 ~~~~~~vliiDe~~~l------~~~~~~~l~~~l~~~~------------~~~~~i~~~~~~~-----~~~~~l~~r~~~ 155 (226)
T 2chg_A 99 GGAPFKIIFLDEADAL------TADAQAALRRTMEMYS------------KSCRFILSCNYVS-----RIIEPIQSRCAV 155 (226)
T ss_dssp TTCSCEEEEEETGGGS------CHHHHHHHHHHHHHTT------------TTEEEEEEESCGG-----GSCHHHHTTSEE
T ss_pred CccCceEEEEeChhhc------CHHHHHHHHHHHHhcC------------CCCeEEEEeCChh-----hcCHHHHHhCce
Confidence 1245688999999984 3345677778877531 2577888888763 678899999999
Q ss_pred EEecCCChhHHHHHHHHHHH
Q psy568 562 IYVDYPGETSLKQIYGTFSR 581 (1614)
Q Consensus 562 i~i~~p~~~~l~~I~~~~~~ 581 (1614)
+.++.|+.+++..++...+.
T Consensus 156 i~~~~~~~~~~~~~l~~~~~ 175 (226)
T 2chg_A 156 FRFKPVPKEAMKKRLLEICE 175 (226)
T ss_dssp EECCCCCHHHHHHHHHHHHH
T ss_pred eecCCCCHHHHHHHHHHHHH
Confidence 99999999999999877654
No 31
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.93 E-value=2.4e-09 Score=132.07 Aligned_cols=148 Identities=19% Similarity=0.229 Sum_probs=93.2
Q ss_pred cCCCEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCCHHHHHhHhhcccceeecCCccccccccCCceEEEEeccC
Q psy568 415 EHKPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTPELLLKTFDHYCEYRKTPNGVILSPIQLGKWLVLFCDEI 494 (1614)
Q Consensus 415 ~~~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~~~~l~~~~~~~~~~~~~~~g~~~~p~~~gk~~vlfiDdi 494 (1614)
..+++||+||||||||++++.++..+.+.+++.++++...+. ..+. .+... ..++..+...+..||||||+
T Consensus 166 ~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~~--~~g~----~~~~~---~~~f~~a~~~~~~vl~iDEi 236 (444)
T 2zan_A 166 PWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSK--WLGE----SEKLV---KNLFQLARENKPSIIFIDEI 236 (444)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC---------------CCCTH---HHHHHHHHHSCSEEEEESCT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHhh--hcch----HHHHH---HHHHHHHHHcCCeEEEEech
Confidence 357899999999999999999998886677888877643321 1111 00000 01111111234589999999
Q ss_pred CCCCcccc--CcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCCCccccccccc-EEEecCCChhH
Q psy568 495 NLPDMDKY--ATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLRHVP-VIYVDYPGETS 571 (1614)
Q Consensus 495 n~p~~d~~--g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r~f~-~i~i~~p~~~~ 571 (1614)
+....... .......++.+++..-.-.. ....++.+|+|+|.+. .++++++|||. .+.++.|+.++
T Consensus 237 d~l~~~~~~~~~~~~~~~~~~lL~~l~~~~------~~~~~v~vI~atn~~~-----~ld~al~rRf~~~i~i~~P~~~~ 305 (444)
T 2zan_A 237 DSLCGSRSENESEAARRIKTEFLVQMQGVG------VDNDGILVLGATNIPW-----VLDSAIRRRFEKRIYIPLPEAHA 305 (444)
T ss_dssp TTTCCCSSCCCCGGGHHHHHHHHTTTTCSS------CCCSSCEEEEEESCGG-----GSCHHHHTTCCEEEECCCCCHHH
T ss_pred HhhccCCCCccccHHHHHHHHHHHHHhCcc------cCCCCEEEEecCCCcc-----ccCHHHHhhcceEEEeCCcCHHH
Confidence 96433221 12222344455544311110 0124689999999885 69999999995 89999999999
Q ss_pred HHHHHHHHHHh
Q psy568 572 LKQIYGTFSRA 582 (1614)
Q Consensus 572 l~~I~~~~~~~ 582 (1614)
...|+..++..
T Consensus 306 r~~il~~~l~~ 316 (444)
T 2zan_A 306 RAAMFRLHLGS 316 (444)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHhc
Confidence 99998877654
No 32
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=98.93 E-value=4.2e-09 Score=130.11 Aligned_cols=157 Identities=17% Similarity=0.194 Sum_probs=98.7
Q ss_pred HHHHHHHhcCCCEEEecCCCCchHHHHHHHHhcCCC-CceEEEEcccCCCHHHHHhHhhcccceeecCCccccccccCC-
Q psy568 407 SLLYTWLAEHKPLVLCGPPGSGKTMTLLSALRALPD-MEVVSLNFSSATTPELLLKTFDHYCEYRKTPNGVILSPIQLG- 484 (1614)
Q Consensus 407 ~ll~~~l~~~~~vLL~Gp~GtGKT~lv~~~~~~l~~-~~~~~i~~s~~t~~~~l~~~~~~~~~~~~~~~g~~~~p~~~g- 484 (1614)
..+...+..+.||||+||||||||++++.+...+.. .++..+++. .++++++.+.+....... .|.+..+. .|
T Consensus 32 ~~l~~al~~~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~-~~t~~dL~G~~~~~~~~~---~g~~~~~~-~g~ 106 (500)
T 3nbx_X 32 RLCLLAALSGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTR-FSTPEEVFGPLSIQALKD---EGRYERLT-SGY 106 (500)
T ss_dssp HHHHHHHHHTCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCT-TCCHHHHHCCBC-------------CBCC-TTS
T ss_pred HHHHHHHhcCCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHh-cCCHHHhcCcccHHHHhh---chhHHhhh-ccC
Confidence 345566778999999999999999999988887643 234444443 346777777543211111 13332221 12
Q ss_pred --ceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCCCcccccccccE-
Q psy568 485 --KWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLRHVPV- 561 (1614)
Q Consensus 485 --k~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r~f~~- 561 (1614)
...|+||||||. .+..+...|...++.+.+.. .+.....+.-.+|+|+|+....+. ..+++++||.+
T Consensus 107 l~~~~IL~IDEI~r------~~~~~q~~LL~~lee~~v~i--~G~~~~~~~~~iI~ATN~lpe~~~--~~~aLldRF~~~ 176 (500)
T 3nbx_X 107 LPEAEIVFLDEIWK------AGPAILNTLLTAINERQFRN--GAHVEKIPMRLLVAASNELPEADS--SLEALYDRMLIR 176 (500)
T ss_dssp GGGCSEEEEESGGG------CCHHHHHHHHHHHHSSEEEC--SSSEEECCCCEEEEEESSCCCTTC--TTHHHHTTCCEE
T ss_pred CCcceeeeHHhHhh------hcHHHHHHHHHHHHHHhccC--CCCcCCcchhhhhhccccCCCccc--cHHHHHHHHHHH
Confidence 235899999998 55667888889999877654 233333333235777786432222 45788888874
Q ss_pred EEecCCCh-hHHHHHHHH
Q psy568 562 IYVDYPGE-TSLKQIYGT 578 (1614)
Q Consensus 562 i~i~~p~~-~~l~~I~~~ 578 (1614)
+.+++|+. ++...|+..
T Consensus 177 i~v~~p~~~ee~~~IL~~ 194 (500)
T 3nbx_X 177 LWLDKVQDKANFRSMLTS 194 (500)
T ss_dssp EECCSCCCHHHHHHHHTC
T ss_pred HHHHHhhhhhhHHHHHhc
Confidence 88899987 667777654
No 33
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=98.92 E-value=8.2e-09 Score=121.67 Aligned_cols=150 Identities=16% Similarity=0.162 Sum_probs=101.3
Q ss_pred cCCCEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCCH--------HHHHhHhhcccceeecCCccccccccCCce
Q psy568 415 EHKPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTP--------ELLLKTFDHYCEYRKTPNGVILSPIQLGKW 486 (1614)
Q Consensus 415 ~~~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~~--------~~l~~~~~~~~~~~~~~~g~~~~p~~~gk~ 486 (1614)
.+.++||+||||||||++++.+++.+ +.+++.++++...+. ..+...+... .|.+... +..
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~~l-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~---~~~ 117 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAKLA-NAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSA-------GGAIDAV---EQN 117 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH-TCCEEEEEGGGGSSCCSGGGSTTHHHHHHHHTT-------TTCHHHH---HHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh-CCCEEEEcchhcccCCccCccHHHHHHHHHHHh-------hHHHhhc---cCC
Confidence 36899999999999999999998877 667888998865542 1121111110 1211111 234
Q ss_pred EEEEeccCCCCCccccCc------ccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCCCccccccccc
Q psy568 487 LVLFCDEINLPDMDKYAT------QRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLRHVP 560 (1614)
Q Consensus 487 ~vlfiDdin~p~~d~~g~------q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r~f~ 560 (1614)
.|+||||++....+..+. ..+...|.++++.+.++.... .....++.+|+++++.. .....++++|.+||.
T Consensus 118 ~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~--~~~~~~~~~i~~~~~~~-~~~~~l~~~l~~R~~ 194 (310)
T 1ofh_A 118 GIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHG--MVKTDHILFIASGAFQV-ARPSDLIPELQGRLP 194 (310)
T ss_dssp CEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTE--EEECTTCEEEEEECCSS-SCGGGSCHHHHHTCC
T ss_pred CEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEecccc--cccCCcEEEEEcCCccc-CCcccCCHHHHhhCC
Confidence 789999999865543211 113566778888776665322 34456788999976543 234578999999996
Q ss_pred -EEEecCCChhHHHHHHHH
Q psy568 561 -VIYVDYPGETSLKQIYGT 578 (1614)
Q Consensus 561 -~i~i~~p~~~~l~~I~~~ 578 (1614)
.+.++.|+.+++..|+..
T Consensus 195 ~~i~~~~~~~~~~~~il~~ 213 (310)
T 1ofh_A 195 IRVELTALSAADFERILTE 213 (310)
T ss_dssp EEEECCCCCHHHHHHHHHS
T ss_pred ceEEcCCcCHHHHHHHHHh
Confidence 599999999999999873
No 34
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.92 E-value=1.8e-09 Score=129.29 Aligned_cols=143 Identities=17% Similarity=0.245 Sum_probs=89.3
Q ss_pred CCCEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCCHHHHHhHhhcccceeecCCccccccccCCceEEEEeccCC
Q psy568 416 HKPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTPELLLKTFDHYCEYRKTPNGVILSPIQLGKWLVLFCDEIN 495 (1614)
Q Consensus 416 ~~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~~~~l~~~~~~~~~~~~~~~g~~~~p~~~gk~~vlfiDdin 495 (1614)
++++||+||||||||++++.+++.+ +.+++.++++... ..+.+..+... .. ++..+..++..||||||++
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~~-~~~~~~v~~~~l~------~~~~g~~~~~~--~~-~f~~a~~~~~~vl~iDEid 153 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATEA-NSTFFSVSSSDLV------SKWMGESEKLV--KQ-LFAMARENKPSIIFIDQVD 153 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHHH-TCEEEEEEHHHHH------SCC---CHHHH--HH-HHHHHHHTSSEEEEEECGG
T ss_pred CceEEEECCCCCcHHHHHHHHHHHh-CCCEEEeeHHHHh------hhhcchHHHHH--HH-HHHHHHHcCCeEEEEechH
Confidence 5689999999999999999999887 6778888775321 11111000000 00 1111112345899999999
Q ss_pred CCCccccC-c----ccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCCCcccccccc-cEEEecCCCh
Q psy568 496 LPDMDKYA-T----QRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLRHV-PVIYVDYPGE 569 (1614)
Q Consensus 496 ~p~~d~~g-~----q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r~f-~~i~i~~p~~ 569 (1614)
.......+ . ..+...|...++.-. . ...++.+|+|+|.+. .++++++||| ..++++.|+.
T Consensus 154 ~l~~~r~~~~~~~~~~~~~~ll~~l~~~~--~-------~~~~v~vI~atn~~~-----~ld~al~rRf~~~i~i~~P~~ 219 (355)
T 2qp9_X 154 ALTGTRGEGESEASRRIKTELLVQMNGVG--N-------DSQGVLVLGATNIPW-----QLDSAIRRRFERRIYIPLPDL 219 (355)
T ss_dssp GGTC------CTHHHHHHHHHHHHHHHCC------------CCEEEEEEESCGG-----GSCHHHHHTCCEEEECCCCCH
T ss_pred hhcccCCCCcchHHHHHHHHHHHHhhccc--c-------cCCCeEEEeecCCcc-----cCCHHHHcccCEEEEeCCcCH
Confidence 64433211 1 122233333334211 0 123688999999885 6899999999 5889999999
Q ss_pred hHHHHHHHHHHHh
Q psy568 570 TSLKQIYGTFSRA 582 (1614)
Q Consensus 570 ~~l~~I~~~~~~~ 582 (1614)
++...|+..++..
T Consensus 220 ~~r~~il~~~l~~ 232 (355)
T 2qp9_X 220 AARTTMFEINVGD 232 (355)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhh
Confidence 9999998877654
No 35
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=98.91 E-value=2.9e-09 Score=135.46 Aligned_cols=147 Identities=20% Similarity=0.194 Sum_probs=94.2
Q ss_pred CEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCCHHHHHhH-----hhcccceeecCCccccccccCCceEEEEec
Q psy568 418 PLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTPELLLKT-----FDHYCEYRKTPNGVILSPIQLGKWLVLFCD 492 (1614)
Q Consensus 418 ~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~~~~l~~~-----~~~~~~~~~~~~g~~~~p~~~gk~~vlfiD 492 (1614)
||||+||||||||++++.+++.++. ... .+....++..+.+. +.+....+ .|.+..+ ...|+|||
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~~r-~~~--~~~~~~~~~~l~~~~~~~~~~g~~~~~---~G~l~~A----~~gil~ID 398 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVAPR-AVY--TTGKGSTAAGLTAAVVREKGTGEYYLE---AGALVLA----DGGIAVID 398 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTCSC-EEC--CCTTCSTTTTSEEECSSGGGTSSCSEE---ECHHHHH----SSSEECCT
T ss_pred ceEEECCCchHHHHHHHHHHHhCCC-cee--cCCCccccccccceeeecccccccccc---CCeeEec----CCCcEEee
Confidence 9999999999999999877766532 211 12111222222111 11111111 1333332 12589999
Q ss_pred cCCCCCccccCcccHHHHHHHHHHcCceeeCCCC-ceEeecCeEEEEeecCCCCCCCC----------CCccccccccc-
Q psy568 493 EINLPDMDKYATQRVISFLRQLIEQRGFYRPADK-QWVSLERIQCVGACNPPTDPGRK----------PLSHRFLRHVP- 560 (1614)
Q Consensus 493 din~p~~d~~g~q~~lelLrqlld~~~~~~~~~~-~~~~~~~~~~iaa~n~~~~~g~~----------~l~~r~~r~f~- 560 (1614)
|++. .+......|.++++.+.+.....+ ......++.+|||+||+. |+. .+++++++||.
T Consensus 399 Eid~------l~~~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~--G~~~~~~~~~~ni~l~~aLl~RFDl 470 (595)
T 3f9v_A 399 EIDK------MRDEDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKF--GRYISERPVSDNINLPPTILSRFDL 470 (595)
T ss_dssp TTTC------CCSHHHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCTT--CCSCTTSCSCTTTCSCSSSGGGCSC
T ss_pred hhhh------CCHhHhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCcC--CccCcccCchhccCCCHHHHhhCeE
Confidence 9998 444577889999999887653333 334446899999999984 555 89999999994
Q ss_pred -EEEecCCChhHHHHHHHHHHHhh
Q psy568 561 -VIYVDYPGETSLKQIYGTFSRAM 583 (1614)
Q Consensus 561 -~i~i~~p~~~~l~~I~~~~~~~~ 583 (1614)
.+..+.|+.+ ...|...++..+
T Consensus 471 ~~~~~~~~~~e-~~~i~~~il~~~ 493 (595)
T 3f9v_A 471 IFILKDQPGEQ-DRELANYILDVH 493 (595)
T ss_dssp CEEECCTTHHH-HHHHHHHHHTTT
T ss_pred EEEeCCCCCHH-HHHHHHHHHHHh
Confidence 5566777777 777776666543
No 36
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.89 E-value=2.3e-08 Score=118.74 Aligned_cols=139 Identities=22% Similarity=0.233 Sum_probs=102.8
Q ss_pred cCCCEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCCHHHHHhHhhcccceeecCCccccccccCCceEEEEeccC
Q psy568 415 EHKPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTPELLLKTFDHYCEYRKTPNGVILSPIQLGKWLVLFCDEI 494 (1614)
Q Consensus 415 ~~~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~~~~l~~~~~~~~~~~~~~~g~~~~p~~~gk~~vlfiDdi 494 (1614)
...+++|+||||||||++++.+.+.+ +.+++.++++.......+.+.+... .++..++||||+
T Consensus 37 ~~~~vll~G~~GtGKT~la~~i~~~~-~~~~~~~~~~~~~~~~~l~~~l~~~----------------~~~~~~l~lDEi 99 (324)
T 1hqc_A 37 PLEHLLLFGPPGLGKTTLAHVIAHEL-GVNLRVTSGPAIEKPGDLAAILANS----------------LEEGDILFIDEI 99 (324)
T ss_dssp CCCCCEEECCTTCCCHHHHHHHHHHH-TCCEEEECTTTCCSHHHHHHHHTTT----------------CCTTCEEEETTT
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHh-CCCEEEEeccccCChHHHHHHHHHh----------------ccCCCEEEEECC
Confidence 44899999999999999999998876 6678889998887777776655321 122357889999
Q ss_pred CCCCccccCcccHHHHHHHHHHcCceeeCCC-----Cce-EeecCeEEEEeecCCCCCCCCCCcccccccc-cEEEecCC
Q psy568 495 NLPDMDKYATQRVISFLRQLIEQRGFYRPAD-----KQW-VSLERIQCVGACNPPTDPGRKPLSHRFLRHV-PVIYVDYP 567 (1614)
Q Consensus 495 n~p~~d~~g~q~~lelLrqlld~~~~~~~~~-----~~~-~~~~~~~~iaa~n~~~~~g~~~l~~r~~r~f-~~i~i~~p 567 (1614)
+.. +....+.|..+++.+.+....+ ..+ ...+++.+|+|+|.++ .+++.|.+|| .++.++.|
T Consensus 100 ~~l------~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~-----~~~~~l~~R~~~~i~l~~~ 168 (324)
T 1hqc_A 100 HRL------SRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPG-----LITAPLLSRFGIVEHLEYY 168 (324)
T ss_dssp TSC------CHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCS-----SCSCSTTTTCSCEEECCCC
T ss_pred ccc------ccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcc-----cCCHHHHhcccEEEecCCC
Confidence 973 3345677778888766442111 112 2335789999999875 5788899999 59999999
Q ss_pred ChhHHHHHHHHHHH
Q psy568 568 GETSLKQIYGTFSR 581 (1614)
Q Consensus 568 ~~~~l~~I~~~~~~ 581 (1614)
+.+++..++..++.
T Consensus 169 ~~~e~~~~l~~~~~ 182 (324)
T 1hqc_A 169 TPEELAQGVMRDAR 182 (324)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999888777654
No 37
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.86 E-value=3e-09 Score=125.95 Aligned_cols=141 Identities=18% Similarity=0.254 Sum_probs=89.9
Q ss_pred CCCEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCCH--HHHHhHhhcccceeecCCccccccccCCceEEEEecc
Q psy568 416 HKPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTP--ELLLKTFDHYCEYRKTPNGVILSPIQLGKWLVLFCDE 493 (1614)
Q Consensus 416 ~~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~~--~~l~~~~~~~~~~~~~~~g~~~~p~~~gk~~vlfiDd 493 (1614)
.+++||+||||||||++++.+++.+ +.+++.++++...+. ......+... +..+...+..|+||||
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~~-~~~~~~v~~~~l~~~~~g~~~~~~~~~-----------f~~a~~~~~~vl~iDE 118 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATEA-NSTFFSVSSSDLVSKWMGESEKLVKQL-----------FAMARENKPSIIFIDQ 118 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHHH-TCEEEEEEHHHHHTTTGGGHHHHHHHH-----------HHHHHHTSSEEEEEEC
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH-CCCEEEEchHHHhhcccchHHHHHHHH-----------HHHHHhcCCeEEEech
Confidence 4579999999999999999998876 677888887542211 1111111111 1111123458999999
Q ss_pred CCCCCcccc-----CcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCCCccccccccc-EEEecCC
Q psy568 494 INLPDMDKY-----ATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLRHVP-VIYVDYP 567 (1614)
Q Consensus 494 in~p~~d~~-----g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r~f~-~i~i~~p 567 (1614)
++......- +...+...+...++.-. .. ..++.+|+|+|.+. .+++++.|||. .++++.|
T Consensus 119 id~l~~~~~~~~~~~~~~~~~~ll~~l~~~~--~~-------~~~v~vi~atn~~~-----~ld~al~~Rf~~~i~~~~p 184 (322)
T 3eie_A 119 VDALTGTRGEGESEASRRIKTELLVQMNGVG--ND-------SQGVLVLGATNIPW-----QLDSAIRRRFERRIYIPLP 184 (322)
T ss_dssp GGGGSCC------CCTHHHHHHHHHHHGGGG--TS-------CCCEEEEEEESCGG-----GSCHHHHHHCCEEEECCCC
T ss_pred hhhhhccCCCCcchHHHHHHHHHHHHhcccc--cc-------CCceEEEEecCChh-----hCCHHHHcccCeEEEeCCC
Confidence 996433210 11222222223333211 11 13688999999886 69999999995 7899999
Q ss_pred ChhHHHHHHHHHHHh
Q psy568 568 GETSLKQIYGTFSRA 582 (1614)
Q Consensus 568 ~~~~l~~I~~~~~~~ 582 (1614)
+.++...|+..++..
T Consensus 185 ~~~~r~~il~~~~~~ 199 (322)
T 3eie_A 185 DLAARTTMFEINVGD 199 (322)
T ss_dssp CHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHhcc
Confidence 999999998877654
No 38
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.85 E-value=8.3e-09 Score=122.49 Aligned_cols=143 Identities=14% Similarity=0.213 Sum_probs=101.3
Q ss_pred HHHHHHHhcCC---CEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCCHHHHHhHhhcccceeecCCccccccccC
Q psy568 407 SLLYTWLAEHK---PLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTPELLLKTFDHYCEYRKTPNGVILSPIQL 483 (1614)
Q Consensus 407 ~ll~~~l~~~~---~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~~~~l~~~~~~~~~~~~~~~g~~~~p~~~ 483 (1614)
..+..++..+. .+|+.||||||||++++.+++.+ +..++.++++... ...+...+...... .|. .
T Consensus 36 ~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l-~~~~~~i~~~~~~-~~~i~~~~~~~~~~---------~~~-~ 103 (324)
T 3u61_B 36 ETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDV-NADMMFVNGSDCK-IDFVRGPLTNFASA---------ASF-D 103 (324)
T ss_dssp HHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHT-TEEEEEEETTTCC-HHHHHTHHHHHHHB---------CCC-S
T ss_pred HHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHh-CCCEEEEcccccC-HHHHHHHHHHHHhh---------ccc-C
Confidence 34555565553 45777889999999999998887 6778888876533 55555544332211 111 3
Q ss_pred CceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCCCcccccccccEEE
Q psy568 484 GKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLRHVPVIY 563 (1614)
Q Consensus 484 gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r~f~~i~ 563 (1614)
|+..|+||||++.... ....+.|+.+++... .++.+|+|+|++. .+++++.+||.++.
T Consensus 104 ~~~~vliiDEi~~l~~-----~~~~~~L~~~le~~~------------~~~~iI~~~n~~~-----~l~~~l~sR~~~i~ 161 (324)
T 3u61_B 104 GRQKVIVIDEFDRSGL-----AESQRHLRSFMEAYS------------SNCSIIITANNID-----GIIKPLQSRCRVIT 161 (324)
T ss_dssp SCEEEEEEESCCCGGG-----HHHHHHHHHHHHHHG------------GGCEEEEEESSGG-----GSCTTHHHHSEEEE
T ss_pred CCCeEEEEECCcccCc-----HHHHHHHHHHHHhCC------------CCcEEEEEeCCcc-----ccCHHHHhhCcEEE
Confidence 4568899999998430 335667777777521 3578899999874 68999999999999
Q ss_pred ecCCChhHHHHHHHHHHHhh
Q psy568 564 VDYPGETSLKQIYGTFSRAM 583 (1614)
Q Consensus 564 i~~p~~~~l~~I~~~~~~~~ 583 (1614)
++.|+.+++..|+..+....
T Consensus 162 ~~~~~~~e~~~il~~~~~~l 181 (324)
T 3u61_B 162 FGQPTDEDKIEMMKQMIRRL 181 (324)
T ss_dssp CCCCCHHHHHHHHHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHHH
Confidence 99999999888877765544
No 39
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.83 E-value=1e-08 Score=125.80 Aligned_cols=179 Identities=17% Similarity=0.185 Sum_probs=111.5
Q ss_pred HHHHHHhcCC--CEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCCHHHHHhHhhcccceeecCCccccccccCCc
Q psy568 408 LLYTWLAEHK--PLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTPELLLKTFDHYCEYRKTPNGVILSPIQLGK 485 (1614)
Q Consensus 408 ll~~~l~~~~--~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~~~~l~~~~~~~~~~~~~~~g~~~~p~~~gk 485 (1614)
.+..++..++ ++||+||||||||++++.+.+.+ +..+..++++. .....+.+.++.... .+. .++
T Consensus 40 ~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~-~~~f~~l~a~~-~~~~~ir~~~~~a~~----------~~~-~~~ 106 (447)
T 3pvs_A 40 PLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA-NADVERISAVT-SGVKEIREAIERARQ----------NRN-AGR 106 (447)
T ss_dssp HHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHT-TCEEEEEETTT-CCHHHHHHHHHHHHH----------HHH-TTC
T ss_pred HHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHh-CCCeEEEEecc-CCHHHHHHHHHHHHH----------hhh-cCC
Confidence 3445555554 69999999999999999888877 66777777643 344555555543111 011 355
Q ss_pred eEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCCCcccccccccEEEec
Q psy568 486 WLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLRHVPVIYVD 565 (1614)
Q Consensus 486 ~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r~f~~i~i~ 565 (1614)
..++||||++.-..+ ....|...++.+ .+.+|++++... ...+++++.+||.++.++
T Consensus 107 ~~iLfIDEI~~l~~~------~q~~LL~~le~~--------------~v~lI~att~n~---~~~l~~aL~sR~~v~~l~ 163 (447)
T 3pvs_A 107 RTILFVDEVHRFNKS------QQDAFLPHIEDG--------------TITFIGATTENP---SFELNSALLSRARVYLLK 163 (447)
T ss_dssp CEEEEEETTTCC------------CCHHHHHTT--------------SCEEEEEESSCG---GGSSCHHHHTTEEEEECC
T ss_pred CcEEEEeChhhhCHH------HHHHHHHHHhcC--------------ceEEEecCCCCc---ccccCHHHhCceeEEeeC
Confidence 689999999984332 233455566643 266777764322 247899999999999999
Q ss_pred CCChhHHHHHHHHHHHhhhhcch-hhhhhHHHHHHHHHHHHHHHHhhcCCCCCCccccChhhHHHHhhhhhcc
Q psy568 566 YPGETSLKQIYGTFSRAMLRLIP-PLRGYADALTNAMVELYLASQEKFTQDMQPHYVYSPREMTRWVRGICEA 637 (1614)
Q Consensus 566 ~p~~~~l~~I~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~hY~F~lRdl~~v~~~i~~~ 637 (1614)
.|+.+++..++..++........ ....+.+.....+... ..-++|.+.++++.+...
T Consensus 164 ~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~---------------~~Gd~R~lln~Le~a~~~ 221 (447)
T 3pvs_A 164 SLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAEL---------------VNGDARRALNTLEMMADM 221 (447)
T ss_dssp CCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHH---------------HCSCHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHH---------------CCCCHHHHHHHHHHHHHh
Confidence 99999999998887764221100 0011222222222221 123888888888877654
No 40
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.80 E-value=4.6e-09 Score=122.97 Aligned_cols=144 Identities=24% Similarity=0.324 Sum_probs=91.9
Q ss_pred hcCCCEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCCHHHHHhHhhcccceeecCCccccccccCCceEEEEecc
Q psy568 414 AEHKPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTPELLLKTFDHYCEYRKTPNGVILSPIQLGKWLVLFCDE 493 (1614)
Q Consensus 414 ~~~~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~~~~l~~~~~~~~~~~~~~~g~~~~p~~~gk~~vlfiDd 493 (1614)
..++++||+||||||||++++.++..+ +.+++.++++. +...+.+..+... .+.+-.+ ..+...++||||
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~~-~~~~i~v~~~~------l~~~~~g~~~~~~--~~~f~~a-~~~~p~il~iDE 116 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANEC-QANFISIKGPE------LLTMWFGESEANV--REIFDKA-RQAAPCVLFFDE 116 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHHT-TCEEEEECHHH------HHHHHHTTCTTHH--HHHHHHH-HHTCSEEEEECS
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHHh-CCCEEEEEhHH------HHhhhcCchHHHH--HHHHHHH-HhcCCeEEEEEC
Confidence 456889999999999999999998877 66777776643 2222211111100 0111111 123458999999
Q ss_pred CCCCCcccc--------CcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCCCcccccc--ccc-EE
Q psy568 494 INLPDMDKY--------ATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLR--HVP-VI 562 (1614)
Q Consensus 494 in~p~~d~~--------g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r--~f~-~i 562 (1614)
++....... ....++..|...++. +.. ..++.+|+|+|.+. .++++++| ||. .+
T Consensus 117 id~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~--~~~--------~~~v~vi~atn~~~-----~ld~al~r~gRf~~~i 181 (301)
T 3cf0_A 117 LDSIAKARGGNIGDGGGAADRVINQILTEMDG--MST--------KKNVFIIGATNRPD-----IIDPAILRPGRLDQLI 181 (301)
T ss_dssp TTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHS--SCT--------TSSEEEEEEESCGG-----GSCGGGGSTTSSCEEE
T ss_pred hHHHhhccCCCcCCcchHHHHHHHHHHHHhhc--ccC--------CCCEEEEEecCCcc-----ccChHHhcCCccceEE
Confidence 996322210 112233333344442 111 13689999999875 68999998 886 88
Q ss_pred EecCCChhHHHHHHHHHHHh
Q psy568 563 YVDYPGETSLKQIYGTFSRA 582 (1614)
Q Consensus 563 ~i~~p~~~~l~~I~~~~~~~ 582 (1614)
+++.|+.++...|+..++..
T Consensus 182 ~i~~p~~~~r~~il~~~l~~ 201 (301)
T 3cf0_A 182 YIPLPDEKSRVAILKANLRK 201 (301)
T ss_dssp ECCCCCHHHHHHHHHHHHTT
T ss_pred ecCCcCHHHHHHHHHHHHcc
Confidence 99999999999998776654
No 41
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.80 E-value=5e-09 Score=121.92 Aligned_cols=145 Identities=21% Similarity=0.268 Sum_probs=95.3
Q ss_pred hcCCCEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCCH--HHHHhHhhcccceeecCCccccccccCCceEEEEe
Q psy568 414 AEHKPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTP--ELLLKTFDHYCEYRKTPNGVILSPIQLGKWLVLFC 491 (1614)
Q Consensus 414 ~~~~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~~--~~l~~~~~~~~~~~~~~~g~~~~p~~~gk~~vlfi 491 (1614)
..+.++||+||||||||++++.+++.+ +.+++.++++..... ......+...+. -...+.+.|+||
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~vl~i 116 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATET-NATFIRVVGSELVKKFIGEGASLVKDIFK-----------LAKEKAPSIIFI 116 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHT-TCEEEEEEGGGGCCCSTTHHHHHHHHHHH-----------HHHHTCSEEEEE
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh-CCCEEEEehHHHHHhccchHHHHHHHHHH-----------HHHHcCCeEEEE
Confidence 456889999999999999999998887 677888887654331 111111111111 011233478999
Q ss_pred ccCCCCCcccc-----CcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCCCcccccc--ccc-EEE
Q psy568 492 DEINLPDMDKY-----ATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLR--HVP-VIY 563 (1614)
Q Consensus 492 Ddin~p~~d~~-----g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r--~f~-~i~ 563 (1614)
||++....... +.....+.+.++++....+... .++.+|+|+|++. .+++++.| ||. ++.
T Consensus 117 DEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~-------~~~~vI~ttn~~~-----~l~~~l~~~~Rf~~~i~ 184 (285)
T 3h4m_A 117 DEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDAR-------GDVKIIGATNRPD-----ILDPAILRPGRFDRIIE 184 (285)
T ss_dssp ETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSS-------SSEEEEEECSCGG-----GBCHHHHSTTSEEEEEE
T ss_pred ECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCC-------CCEEEEEeCCCch-----hcCHHHcCCCcCCeEEE
Confidence 99986422111 2334455555555532111111 3688999999875 68999998 886 799
Q ss_pred ecCCChhHHHHHHHHHHHh
Q psy568 564 VDYPGETSLKQIYGTFSRA 582 (1614)
Q Consensus 564 i~~p~~~~l~~I~~~~~~~ 582 (1614)
++.|+.++...|+..++..
T Consensus 185 ~~~p~~~~r~~il~~~~~~ 203 (285)
T 3h4m_A 185 VPAPDEKGRLEILKIHTRK 203 (285)
T ss_dssp CCCCCHHHHHHHHHHHHTT
T ss_pred ECCCCHHHHHHHHHHHHhc
Confidence 9999999999998876553
No 42
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.78 E-value=2.2e-08 Score=115.94 Aligned_cols=162 Identities=9% Similarity=0.045 Sum_probs=101.9
Q ss_pred hHHHHHHHHHhcC--CCEEEecCCCCchHHHHHHHHhcCC---------CCceEEEEcccCCCHHHHHhHhhcccceeec
Q psy568 404 RHESLLYTWLAEH--KPLVLCGPPGSGKTMTLLSALRALP---------DMEVVSLNFSSATTPELLLKTFDHYCEYRKT 472 (1614)
Q Consensus 404 r~~~ll~~~l~~~--~~vLL~Gp~GtGKT~lv~~~~~~l~---------~~~~~~i~~s~~t~~~~l~~~~~~~~~~~~~ 472 (1614)
+....+...+..+ .+++|+||||||||++++.+++.+. +..++.+||...+++..+...+-..+.....
T Consensus 31 ~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~ 110 (318)
T 3te6_A 31 RIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENL 110 (318)
T ss_dssp HHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC-
T ss_pred HHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCC
Confidence 3444566666544 5699999999999999999998662 2356789999888876554443322211000
Q ss_pred CCcc-------ccc--cccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCC
Q psy568 473 PNGV-------ILS--PIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPP 543 (1614)
Q Consensus 473 ~~g~-------~~~--p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~ 543 (1614)
..|. ++. +...++.+|+|+||++.-. .|. +|..+++... +. ..++.+|+.+|..
T Consensus 111 ~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~-----~q~---~L~~l~~~~~-~~--------~s~~~vI~i~n~~ 173 (318)
T 3te6_A 111 CGDISLEALNFYITNVPKAKKRKTLILIQNPENLL-----SEK---ILQYFEKWIS-SK--------NSKLSIICVGGHN 173 (318)
T ss_dssp -CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC-----CTH---HHHHHHHHHH-CS--------SCCEEEEEECCSS
T ss_pred CchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh-----cch---HHHHHHhccc-cc--------CCcEEEEEEecCc
Confidence 0011 011 1124567899999999854 233 4444444211 11 1257888988876
Q ss_pred CCCCCCCCcccccccc--cEEEecCCChhHHHHHHHHHHHhh
Q psy568 544 TDPGRKPLSHRFLRHV--PVIYVDYPGETSLKQIYGTFSRAM 583 (1614)
Q Consensus 544 ~~~g~~~l~~r~~r~f--~~i~i~~p~~~~l~~I~~~~~~~~ 583 (1614)
. .-...+++|+.+|| .+|.+++++.+++..|+...+...
T Consensus 174 d-~~~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~~ 214 (318)
T 3te6_A 174 V-TIREQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLKSL 214 (318)
T ss_dssp C-CCHHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHHH
T ss_pred c-cchhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHHhh
Confidence 4 12234778888888 479999999999999988877654
No 43
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.76 E-value=8.1e-10 Score=120.10 Aligned_cols=137 Identities=17% Similarity=0.205 Sum_probs=88.7
Q ss_pred cCCCEEEecCCCCchHHHHHHHHhcC---------CCCceEEEEcccCCC----HHHHHhHhhcccceeecCCccccccc
Q psy568 415 EHKPLVLCGPPGSGKTMTLLSALRAL---------PDMEVVSLNFSSATT----PELLLKTFDHYCEYRKTPNGVILSPI 481 (1614)
Q Consensus 415 ~~~~vLL~Gp~GtGKT~lv~~~~~~l---------~~~~~~~i~~s~~t~----~~~l~~~~~~~~~~~~~~~g~~~~p~ 481 (1614)
.+.+++|+||+|||||++++.+++.+ .+..++.++++.... .......+...+.. ..
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~ 111 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLND----------LA 111 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTTCSHHHHHHHHHHHHHH----------HH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhccCCccccHHHHHHHHHHH----------Hh
Confidence 34789999999999999999998765 245667777654321 11111112111110 00
Q ss_pred cCCceEEEEeccCCCCCcc--ccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCCCcccccccc
Q psy568 482 QLGKWLVLFCDEINLPDMD--KYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLRHV 559 (1614)
Q Consensus 482 ~~gk~~vlfiDdin~p~~d--~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r~f 559 (1614)
..++..|+||||++..... ..+...+..+|+.+++.+ ++.+|+++|++.......+++++.+||
T Consensus 112 ~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~~--------------~~~~i~~~~~~~~~~~~~~~~~l~~r~ 177 (195)
T 1jbk_A 112 KQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARG--------------ELHCVGATTLDEYRQYIEKDAALERRF 177 (195)
T ss_dssp HSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHTT--------------SCCEEEEECHHHHHHHTTTCHHHHTTE
T ss_pred hcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhccC--------------CeEEEEeCCHHHHHHHHhcCHHHHHHh
Confidence 1234578899999974321 223566788888888653 456788887653112235789999999
Q ss_pred cEEEecCCChhHHHHH
Q psy568 560 PVIYVDYPGETSLKQI 575 (1614)
Q Consensus 560 ~~i~i~~p~~~~l~~I 575 (1614)
..+.++.|+.+++..|
T Consensus 178 ~~i~~~~p~~~~~~~i 193 (195)
T 1jbk_A 178 QKVFVAEPSVEDTIAI 193 (195)
T ss_dssp EEEECCCCCHHHHHTT
T ss_pred ceeecCCCCHHHHHHH
Confidence 9999999999988766
No 44
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=98.75 E-value=7.2e-09 Score=124.95 Aligned_cols=201 Identities=17% Similarity=0.177 Sum_probs=112.0
Q ss_pred cCCCEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCCHHHHH----hHhhcccceeecCCccccccccCCceEEEE
Q psy568 415 EHKPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTPELLL----KTFDHYCEYRKTPNGVILSPIQLGKWLVLF 490 (1614)
Q Consensus 415 ~~~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~~~~l~----~~~~~~~~~~~~~~g~~~~p~~~gk~~vlf 490 (1614)
.+.++||+||||||||++++.+++.+ +.+++.++++....+..+- +.+...+... .|.+- .....|+|
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~-~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~---~~~~~----~~~~~vl~ 121 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL-DVPFTMADATTLTEAGYVGEDVENIIQKLLQKC---DYDVQ----KAQRGIVY 121 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT-TCCEEEEEHHHHTTCHHHHHHHTHHHHHHHHHT---TTCHH----HHHHCEEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc-CCCEEEechHHhcccccccccHHHHHHHHHHHh---hhhHH----hcCCcEEE
Confidence 46799999999999999999998887 7889999998655432111 1111111110 11111 12346899
Q ss_pred eccCCCCCccccCc--------ccHHHHHHHHHHcCceee-C-CCCc--------eEeecCeEEEEeecCCCC-------
Q psy568 491 CDEINLPDMDKYAT--------QRVISFLRQLIEQRGFYR-P-ADKQ--------WVSLERIQCVGACNPPTD------- 545 (1614)
Q Consensus 491 iDdin~p~~d~~g~--------q~~lelLrqlld~~~~~~-~-~~~~--------~~~~~~~~~iaa~n~~~~------- 545 (1614)
|||++....+..+. ..+...|.++++ |.... + ..+. +....++.||++++..+.
T Consensus 122 lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~le-g~~~~~~~~~~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~ 200 (363)
T 3hws_A 122 IDQIDKISRKSDNPSITRDVSGEGVQQALLKLIE-GTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHR 200 (363)
T ss_dssp EECHHHHCCCSSCC---CHHHHHHHHHHHHHHHH-CC----------------CCCCCTTSSEEEEEECCTTHHHHHHHH
T ss_pred EeChhhhcccccccccccccchHHHHHHHHHHhc-CceeeccCccccccCCCceEEEECCCceEEecCCcHHHHHHHHHh
Confidence 99999433221111 127888889999 44221 1 1111 222346667777665310
Q ss_pred CCC---------------------------------CCCcccccccccEEE-ecCCChhHHHHHHHH----HHHhhhhcc
Q psy568 546 PGR---------------------------------KPLSHRFLRHVPVIY-VDYPGETSLKQIYGT----FSRAMLRLI 587 (1614)
Q Consensus 546 ~g~---------------------------------~~l~~r~~r~f~~i~-i~~p~~~~l~~I~~~----~~~~~~~~~ 587 (1614)
.++ ..+.+.|++||.++. +++|+.+++..|... ++..+....
T Consensus 201 ~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~R~~~~~~~~pl~~~~~~~I~~~~~~~l~~~~~~~~ 280 (363)
T 3hws_A 201 VETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALF 280 (363)
T ss_dssp HCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHH
T ss_pred hhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhcccCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 016888999999654 789999999999876 333221110
Q ss_pred h---hhhhhHHHHHHHHHHHHHHHHhhcCCCCCCccccChhhHHHHhhhhhc
Q psy568 588 P---PLRGYADALTNAMVELYLASQEKFTQDMQPHYVYSPREMTRWVRGICE 636 (1614)
Q Consensus 588 ~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~hY~F~lRdl~~v~~~i~~ 636 (1614)
. ....+.+.....+... .+ .+.+|.|+|.++++.++.
T Consensus 281 ~~~~~~l~~~~~a~~~L~~~------~~------~~~~gaR~L~~~ie~~~~ 320 (363)
T 3hws_A 281 NLEGVDLEFRDEALDAIAKK------AM------ARKTGARGLRSIVEAALL 320 (363)
T ss_dssp HTTTCEEEECHHHHHHHHHH------HH------HTTCTTTTHHHHHHHHHH
T ss_pred HhcCceEEECHHHHHHHHHh------hc------CCccCchHHHHHHHHHHH
Confidence 0 0011222222222221 01 245678999999988764
No 45
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.73 E-value=4.2e-09 Score=130.81 Aligned_cols=134 Identities=22% Similarity=0.294 Sum_probs=82.7
Q ss_pred hcCCCEEEecCCCCchHHHHHHHHhcC---------CCCceEEEEcccCCCHHHHHhHhhcccceeecCCccccccccCC
Q psy568 414 AEHKPLVLCGPPGSGKTMTLLSALRAL---------PDMEVVSLNFSSATTPELLLKTFDHYCEYRKTPNGVILSPIQLG 484 (1614)
Q Consensus 414 ~~~~~vLL~Gp~GtGKT~lv~~~~~~l---------~~~~~~~i~~s~~t~~~~l~~~~~~~~~~~~~~~g~~~~p~~~g 484 (1614)
....|+||+||||||||++++.++..+ .+..++.++++. ...+.++... +.++......
T Consensus 199 ~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~-----~~~g~~e~~~-------~~~~~~~~~~ 266 (468)
T 3pxg_A 199 RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGT-----KYRGEFEDRL-------KKVMDEIRQA 266 (468)
T ss_dssp SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC---------------CTTH-------HHHHHHHHTC
T ss_pred cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCCc-----cccchHHHHH-------HHHHHHHHhc
Confidence 356789999999999999999998765 355566676651 1111111100 1111111123
Q ss_pred ceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCCCcccccccccEEEe
Q psy568 485 KWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLRHVPVIYV 564 (1614)
Q Consensus 485 k~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r~f~~i~i 564 (1614)
+..|+||| |++.....|...++.| ++++|+|+|++...+...++++|.|||.++.+
T Consensus 267 ~~~iLfiD----------~~~~a~~~L~~~L~~g--------------~v~vI~at~~~e~~~~~~~~~al~~Rf~~i~v 322 (468)
T 3pxg_A 267 GNIILFID----------AAIDASNILKPSLARG--------------ELQCIGATTLDEYRKYIEKDAALERRFQPIQV 322 (468)
T ss_dssp CCCEEEEC----------C--------CCCTTSS--------------SCEEEEECCTTTTHHHHTTCSHHHHSEEEEEC
T ss_pred CCeEEEEe----------CchhHHHHHHHhhcCC--------------CEEEEecCCHHHHHHHhhcCHHHHHhCcccee
Confidence 45789999 3444555555555432 57899999987522234689999999999999
Q ss_pred cCCChhHHHHHHHHHHHhh
Q psy568 565 DYPGETSLKQIYGTFSRAM 583 (1614)
Q Consensus 565 ~~p~~~~l~~I~~~~~~~~ 583 (1614)
+.|+.+++..|+..+...+
T Consensus 323 ~~p~~e~~~~iL~~~~~~~ 341 (468)
T 3pxg_A 323 DQPSVDESIQILQGLRDRY 341 (468)
T ss_dssp CCCCHHHHHHHHHHTTTTS
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 9999999999988776543
No 46
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=98.72 E-value=2.6e-08 Score=119.55 Aligned_cols=151 Identities=16% Similarity=0.227 Sum_probs=93.4
Q ss_pred cCCCEEEecCCCCchHHHHHHHHhcCCC------CceE------------------------EEEcccCCCHHHHHhHhh
Q psy568 415 EHKPLVLCGPPGSGKTMTLLSALRALPD------MEVV------------------------SLNFSSATTPELLLKTFD 464 (1614)
Q Consensus 415 ~~~~vLL~Gp~GtGKT~lv~~~~~~l~~------~~~~------------------------~i~~s~~t~~~~l~~~~~ 464 (1614)
...|+||+||||||||++++.+.+.+.. .++. .+......+...+.+...
T Consensus 44 ~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~ 123 (350)
T 1g8p_A 44 GIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALD 123 (350)
T ss_dssp GGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEEC
T ss_pred CCceEEEECCCCccHHHHHHHHHHhCccccccccccccccccccccchhhhhccccccCCCcccccCCCcchhhheeech
Confidence 5678999999999999999999987742 1110 011112223334433210
Q ss_pred --cccce--eecCCccccccccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCce-eeCCCCceEeecCeEEEEe
Q psy568 465 --HYCEY--RKTPNGVILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGF-YRPADKQWVSLERIQCVGA 539 (1614)
Q Consensus 465 --~~~~~--~~~~~g~~~~p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~-~~~~~~~~~~~~~~~~iaa 539 (1614)
..... .....|.+..+ ...++||||++. .+....+.|+++++.+.. +...+.......++.+|+|
T Consensus 124 ~~~~~~~~~~~~~~g~~~~a----~~~vl~iDEi~~------l~~~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~ 193 (350)
T 1g8p_A 124 IERAISKGEKAFEPGLLARA----NRGYLYIDECNL------LEDHIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGS 193 (350)
T ss_dssp HHHHHHHCGGGEECCHHHHH----TTEEEEETTGGG------SCHHHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEE
T ss_pred hhhhhcCCceeecCceeeec----CCCEEEEeChhh------CCHHHHHHHHHHHhcCceEEEecceEEeeCCceEEEEE
Confidence 00000 00011322211 236888999998 444577888899998753 3333444445568999999
Q ss_pred ecCCCCCCCCCCcccccccccE-EEecCCC-hhHHHHHHHHH
Q psy568 540 CNPPTDPGRKPLSHRFLRHVPV-IYVDYPG-ETSLKQIYGTF 579 (1614)
Q Consensus 540 ~n~~~~~g~~~l~~r~~r~f~~-i~i~~p~-~~~l~~I~~~~ 579 (1614)
+||.. ..++++|++||.+ +.++.|+ .+....|+...
T Consensus 194 ~n~~~----~~l~~~L~~R~~~~~~l~~~~~~~~~~~il~~~ 231 (350)
T 1g8p_A 194 GNPEE----GDLRPQLLDRFGLSVEVLSPRDVETRVEVIRRR 231 (350)
T ss_dssp ECSCS----CCCCHHHHTTCSEEEECCCCCSHHHHHHHHHHH
T ss_pred eCCCC----CCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHH
Confidence 99853 2589999999986 8999995 44555776554
No 47
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.71 E-value=2.8e-08 Score=114.01 Aligned_cols=141 Identities=16% Similarity=0.293 Sum_probs=87.2
Q ss_pred hcCCCEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCCH------HHHHhHhhcccceeecCCccccccccCCceE
Q psy568 414 AEHKPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTP------ELLLKTFDHYCEYRKTPNGVILSPIQLGKWL 487 (1614)
Q Consensus 414 ~~~~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~~------~~l~~~~~~~~~~~~~~~g~~~~p~~~gk~~ 487 (1614)
....++||+||||||||++++.+++.+ +.+++.++++...+. ..+.+.+.. ...+...
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------a~~~~~~ 100 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEA-QVPFLAMAGAEFVEVIGGLGAARVRSLFKE---------------ARARAPC 100 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH-TCCEEEEETTTTSSSSTTHHHHHHHHHHHH---------------HHHTCSE
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh-CCCEEEechHHHHhhccChhHHHHHHHHHH---------------HHhcCCe
Confidence 345789999999999999999998876 677888888754321 111111111 1112347
Q ss_pred EEEeccCCCCCccccC------cccHHHHHHHHHHc-CceeeCCCCceEeecCeEEEEeecCCCCCCCCCCcccccc--c
Q psy568 488 VLFCDEINLPDMDKYA------TQRVISFLRQLIEQ-RGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLR--H 558 (1614)
Q Consensus 488 vlfiDdin~p~~d~~g------~q~~lelLrqlld~-~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r--~ 558 (1614)
|+||||++........ .......+.+++.. .+. .. ..++.+|+|+|.+. .+++++.| |
T Consensus 101 vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~-~~-------~~~~~vi~~tn~~~-----~ld~~l~~~~R 167 (262)
T 2qz4_A 101 IVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGM-GT-------TDHVIVLASTNRAD-----ILDGALMRPGR 167 (262)
T ss_dssp EEEEECC-------------------CHHHHHHHHHHHTC-CT-------TCCEEEEEEESCGG-----GGGSGGGSTTS
T ss_pred EEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCc-CC-------CCCEEEEecCCChh-----hcCHHHhcCCc
Confidence 8999999975322100 11111223333321 010 00 13688999999875 68899998 9
Q ss_pred cc-EEEecCCChhHHHHHHHHHHHhh
Q psy568 559 VP-VIYVDYPGETSLKQIYGTFSRAM 583 (1614)
Q Consensus 559 f~-~i~i~~p~~~~l~~I~~~~~~~~ 583 (1614)
|. .+.++.|+.++...|+..++...
T Consensus 168 ~~~~i~i~~p~~~~r~~il~~~~~~~ 193 (262)
T 2qz4_A 168 LDRHVFIDLPTLQERREIFEQHLKSL 193 (262)
T ss_dssp CCEEEECCSCCHHHHHHHHHHHHHHT
T ss_pred CCeEEEeCCcCHHHHHHHHHHHHHhC
Confidence 94 88999999999999988877643
No 48
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.71 E-value=8.6e-09 Score=121.46 Aligned_cols=183 Identities=16% Similarity=0.067 Sum_probs=109.2
Q ss_pred cCCCEEEecCCCCchHHHHHHHHhcCC------CCceEEEEcccCCCH--HHHHhHhhcccceeecCCccccccccCCce
Q psy568 415 EHKPLVLCGPPGSGKTMTLLSALRALP------DMEVVSLNFSSATTP--ELLLKTFDHYCEYRKTPNGVILSPIQLGKW 486 (1614)
Q Consensus 415 ~~~~vLL~Gp~GtGKT~lv~~~~~~l~------~~~~~~i~~s~~t~~--~~l~~~~~~~~~~~~~~~g~~~~p~~~gk~ 486 (1614)
.+.|+||+||||||||++++.+++.+. +.+++.++++..... ....+.+. +.+-.. +.
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~----------~~~~~~----~~ 131 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTK----------EVLKRA----MG 131 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTCCSSTTCHHHHHH----------HHHHHH----TT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhhhhcccccHHHHH----------HHHHhc----CC
Confidence 346799999999999999987776541 235667766543221 00000000 111111 12
Q ss_pred EEEEeccCCCCCccc---cCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCCCcccccccc-cEE
Q psy568 487 LVLFCDEINLPDMDK---YATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLRHV-PVI 562 (1614)
Q Consensus 487 ~vlfiDdin~p~~d~---~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r~f-~~i 562 (1614)
.|+||||++...... -.++.++..|.++++.+. .++.+|+++|++.......++++|.+|| .++
T Consensus 132 ~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~------------~~~~~i~~~~~~~~~~~~~~~~~l~~R~~~~i 199 (309)
T 3syl_A 132 GVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNR------------DDLVVILAGYADRMENFFQSNPGFRSRIAHHI 199 (309)
T ss_dssp SEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCT------------TTCEEEEEECHHHHHHHHHHSTTHHHHEEEEE
T ss_pred CEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCC------------CCEEEEEeCChHHHHHHHhhCHHHHHhCCeEE
Confidence 488899999642211 135667778888888642 3678899988652111123568999999 799
Q ss_pred EecCCChhHHHHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHHHhhcCCCCCCccccChhhHHHHhhhhhc
Q psy568 563 YVDYPGETSLKQIYGTFSRAMLRLIPPLRGYADALTNAMVELYLASQEKFTQDMQPHYVYSPREMTRWVRGICE 636 (1614)
Q Consensus 563 ~i~~p~~~~l~~I~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~hY~F~lRdl~~v~~~i~~ 636 (1614)
.++.|+.+++..|+..++...-. .+.......+........ ..++.-|.|++.++++.++.
T Consensus 200 ~~~~~~~~~~~~il~~~l~~~~~------~~~~~~~~~l~~~~~~~~-------~~~~~gn~r~l~~~l~~a~~ 260 (309)
T 3syl_A 200 EFPDYSDEELFEIAGHMLDDQNY------QMTPEAETALRAYIGLRR-------NQPHFANARSIRNALDRARL 260 (309)
T ss_dssp EECCCCHHHHHHHHHHHHHHTTC------EECHHHHHHHHHHHHHHT-------TSSSCCHHHHHHHHHHHHHH
T ss_pred EcCCcCHHHHHHHHHHHHHHcCC------CCCHHHHHHHHHHHHHhc-------cCCCCCcHHHHHHHHHHHHH
Confidence 99999999999999887765321 111222222222222111 11344479999998887664
No 49
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.66 E-value=2.4e-08 Score=121.48 Aligned_cols=145 Identities=19% Similarity=0.284 Sum_probs=88.2
Q ss_pred cCCCEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCCHHHHHhHhhcccceeecCCccccccccCCceEEEEeccC
Q psy568 415 EHKPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTPELLLKTFDHYCEYRKTPNGVILSPIQLGKWLVLFCDEI 494 (1614)
Q Consensus 415 ~~~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~~~~l~~~~~~~~~~~~~~~g~~~~p~~~gk~~vlfiDdi 494 (1614)
...++||+||||||||++++.++..+ +.+++.++++..... ..+....... +. +..+......||||||+
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~~-~~~~~~v~~~~l~~~--~~g~~~~~~~------~~-~~~a~~~~~~il~iDEi 216 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAES-NATFFNISAASLTSK--YVGEGEKLVR------AL-FAVARELQPSIIFIDQV 216 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHHT-TCEEEEECSCCC---------CHHHHH------HH-HHHHHHSSSEEEEEETG
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhh-cCcEEEeeHHHhhcc--ccchHHHHHH------HH-HHHHHhcCCeEEEEECc
Confidence 35799999999999999999998876 778888888765432 1111000000 00 10111123478999999
Q ss_pred CCCCcccc-C----cccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCCCccccccccc-EEEecCCC
Q psy568 495 NLPDMDKY-A----TQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLRHVP-VIYVDYPG 568 (1614)
Q Consensus 495 n~p~~d~~-g----~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r~f~-~i~i~~p~ 568 (1614)
+......- + ...+..-|...++. +... ...++.+|+|+|++. .+++++.|||. ++.++.|+
T Consensus 217 d~l~~~~~~~~~~~~~~~~~~ll~~l~~--~~~~------~~~~v~vI~atn~~~-----~l~~~l~~R~~~~i~i~~p~ 283 (389)
T 3vfd_A 217 DSLLCERREGEHDASRRLKTEFLIEFDG--VQSA------GDDRVLVMGATNRPQ-----ELDEAVLRRFIKRVYVSLPN 283 (389)
T ss_dssp GGGC--------CTHHHHHHHHHHHHHH--HC-----------CEEEEEEESCGG-----GCCHHHHTTCCEEEECCCCC
T ss_pred hhhcccCCCccchHHHHHHHHHHHHhhc--cccc------CCCCEEEEEecCCch-----hcCHHHHcCcceEEEcCCcC
Confidence 86422210 1 12222222223332 1110 113689999999875 78999999996 79999999
Q ss_pred hhHHHHHHHHHHHh
Q psy568 569 ETSLKQIYGTFSRA 582 (1614)
Q Consensus 569 ~~~l~~I~~~~~~~ 582 (1614)
.++...|+..++..
T Consensus 284 ~~~r~~il~~~~~~ 297 (389)
T 3vfd_A 284 EETRLLLLKNLLCK 297 (389)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHh
Confidence 99999998776653
No 50
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=98.65 E-value=3e-08 Score=122.89 Aligned_cols=143 Identities=16% Similarity=0.246 Sum_probs=95.4
Q ss_pred HhcCCCEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCCH--HHHHhHhhcccceeecCCccccccccCCceEEEE
Q psy568 413 LAEHKPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTP--ELLLKTFDHYCEYRKTPNGVILSPIQLGKWLVLF 490 (1614)
Q Consensus 413 l~~~~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~~--~~l~~~~~~~~~~~~~~~g~~~~p~~~gk~~vlf 490 (1614)
+....+|||+||||||||++++.++..+ +.+++.++|+...+. ....+.+. +.+..+ ..+++.++|
T Consensus 235 ~~~~~~vLL~GppGtGKT~lAraia~~~-~~~fv~vn~~~l~~~~~g~~~~~~~----------~~f~~A-~~~~p~iLf 302 (489)
T 3hu3_A 235 VKPPRGILLYGPPGTGKTLIARAVANET-GAFFFLINGPEIMSKLAGESESNLR----------KAFEEA-EKNAPAIIF 302 (489)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHHHC-SSEEEEEEHHHHHTSCTTHHHHHHH----------HHHHHH-HHTCSEEEE
T ss_pred CCCCCcEEEECcCCCCHHHHHHHHHHHh-CCCEEEEEchHhhhhhcchhHHHHH----------HHHHHH-HhcCCcEEE
Confidence 3456789999999999999999998877 778899998643221 11111111 112222 134558999
Q ss_pred eccCCCCCcccc---C--cccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCCCcccccc--ccc-EE
Q psy568 491 CDEINLPDMDKY---A--TQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLR--HVP-VI 562 (1614)
Q Consensus 491 iDdin~p~~d~~---g--~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r--~f~-~i 562 (1614)
||||+....... + ...+...|..+++... . ..++.+|+|+|.+. .+++++.| ||. .+
T Consensus 303 LDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~--~--------~~~v~vIaaTn~~~-----~Ld~al~r~gRf~~~i 367 (489)
T 3hu3_A 303 IDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK--Q--------RAHVIVMAATNRPN-----SIDPALRRFGRFDREV 367 (489)
T ss_dssp EESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSC--T--------TSCEEEEEEESCGG-----GBCGGGGSTTSSCEEE
T ss_pred ecchhhhccccccccchHHHHHHHHHHHHhhccc--c--------CCceEEEEecCCcc-----ccCHHHhCCCcCceEE
Confidence 999985333211 1 1234444555555311 1 13689999999885 68899988 786 68
Q ss_pred EecCCChhHHHHHHHHHHHh
Q psy568 563 YVDYPGETSLKQIYGTFSRA 582 (1614)
Q Consensus 563 ~i~~p~~~~l~~I~~~~~~~ 582 (1614)
.++.|+.++...|+..++..
T Consensus 368 ~i~~P~~~eR~~IL~~~~~~ 387 (489)
T 3hu3_A 368 DIGIPDATGRLEILQIHTKN 387 (489)
T ss_dssp ECCCCCHHHHHHHHHHHTTT
T ss_pred EeCCCCHHHHHHHHHHHHhc
Confidence 99999999999998776553
No 51
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.65 E-value=1.8e-07 Score=114.71 Aligned_cols=138 Identities=25% Similarity=0.318 Sum_probs=89.4
Q ss_pred CCCEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCCH------HHHHhHhhcccceeecCCccccccccCCceEEE
Q psy568 416 HKPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTP------ELLLKTFDHYCEYRKTPNGVILSPIQLGKWLVL 489 (1614)
Q Consensus 416 ~~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~~------~~l~~~~~~~~~~~~~~~g~~~~p~~~gk~~vl 489 (1614)
.+++||+||||||||++++.++... +.+++.++++..... ..+...+. .+ ..+.++|+
T Consensus 49 p~gvLL~GppGtGKT~Laraia~~~-~~~f~~is~~~~~~~~~g~~~~~~r~lf~--------------~A-~~~~p~IL 112 (476)
T 2ce7_A 49 PKGILLVGPPGTGKTLLARAVAGEA-NVPFFHISGSDFVELFVGVGAARVRDLFA--------------QA-KAHAPCIV 112 (476)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHH-TCCEEEEEGGGTTTCCTTHHHHHHHHHHH--------------HH-HHTCSEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc-CCCeeeCCHHHHHHHHhcccHHHHHHHHH--------------HH-HhcCCCEE
Confidence 4679999999999999999988876 678888888754431 11111111 11 12345899
Q ss_pred EeccCCCCCcccc----C-cccHHHHHHHHHHc-CceeeCCCCceEeecCeEEEEeecCCCCCCCCCCcccccc--ccc-
Q psy568 490 FCDEINLPDMDKY----A-TQRVISFLRQLIEQ-RGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLR--HVP- 560 (1614)
Q Consensus 490 fiDdin~p~~d~~----g-~q~~lelLrqlld~-~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r--~f~- 560 (1614)
||||++......- | .......+.+++.. .++.. ..++.+|+|+|.+. .++++++| ||.
T Consensus 113 fIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~--------~~~viVIaaTn~~~-----~Ld~allR~gRFd~ 179 (476)
T 2ce7_A 113 FIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDS--------KEGIIVMAATNRPD-----ILDPALLRPGRFDK 179 (476)
T ss_dssp EEETGGGTCCC---------CHHHHHHHHHHHHHHHSCG--------GGTEEEEEEESCGG-----GSCGGGGSTTSSCE
T ss_pred EEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCC--------CCCEEEEEecCChh-----hhchhhcccCccee
Confidence 9999987443220 1 11112223333321 01111 13688999999875 68888887 887
Q ss_pred EEEecCCChhHHHHHHHHHHHh
Q psy568 561 VIYVDYPGETSLKQIYGTFSRA 582 (1614)
Q Consensus 561 ~i~i~~p~~~~l~~I~~~~~~~ 582 (1614)
.+.++.|+.++...|++.++..
T Consensus 180 ~i~i~~Pd~~~R~~Il~~~~~~ 201 (476)
T 2ce7_A 180 KIVVDPPDMLGRKKILEIHTRN 201 (476)
T ss_dssp EEECCCCCHHHHHHHHHHHHTT
T ss_pred EeecCCCCHHHHHHHHHHHHHh
Confidence 7899999999999998766553
No 52
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.65 E-value=3.2e-08 Score=118.60 Aligned_cols=143 Identities=24% Similarity=0.260 Sum_probs=90.8
Q ss_pred cCCCEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCCH--HHHHhHhhcccceeecCCccccccccCCceEEEEec
Q psy568 415 EHKPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTP--ELLLKTFDHYCEYRKTPNGVILSPIQLGKWLVLFCD 492 (1614)
Q Consensus 415 ~~~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~~--~~l~~~~~~~~~~~~~~~g~~~~p~~~gk~~vlfiD 492 (1614)
..+++||+||||||||++++.+++.+ +.+++.++++..... ....+.+...+ .....++..|+|||
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~-~~~~~~i~~~~l~~~~~g~~~~~~~~~~-----------~~a~~~~~~vl~iD 183 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQS-GATFFSISASSLTSKWVGEGEKMVRALF-----------AVARCQQPAVIFID 183 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHT-TCEEEEEEGGGGCCSSTTHHHHHHHHHH-----------HHHHHTCSEEEEEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHc-CCeEEEEehHHhhccccchHHHHHHHHH-----------HHHHhcCCeEEEEe
Confidence 46789999999999999999998877 778889998765432 11111111101 11112345899999
Q ss_pred cCCCCCcccc-Cc----ccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCCCccccccccc-EEEecC
Q psy568 493 EINLPDMDKY-AT----QRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLRHVP-VIYVDY 566 (1614)
Q Consensus 493 din~p~~d~~-g~----q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r~f~-~i~i~~ 566 (1614)
|++......- +. ..++.-+...++.. .. ....++.+|+|+|.+. .+++++.|||. .+.++.
T Consensus 184 Eid~l~~~~~~~~~~~~~~~~~~lL~~l~~~--~~------~~~~~v~vI~atn~~~-----~l~~~l~~Rf~~~i~i~~ 250 (357)
T 3d8b_A 184 EIDSLLSQRGDGEHESSRRIKTEFLVQLDGA--TT------SSEDRILVVGATNRPQ-----EIDEAARRRLVKRLYIPL 250 (357)
T ss_dssp THHHHTBC------CHHHHHHHHHHHHHHC------------CCCCEEEEEEESCGG-----GBCHHHHTTCCEEEECCC
T ss_pred CchhhhccCCCCcchHHHHHHHHHHHHHhcc--cc------cCCCCEEEEEecCChh-----hCCHHHHhhCceEEEeCC
Confidence 9985332210 11 11222222223321 11 1113688999999875 68999999997 789999
Q ss_pred CChhHHHHHHHHHHHh
Q psy568 567 PGETSLKQIYGTFSRA 582 (1614)
Q Consensus 567 p~~~~l~~I~~~~~~~ 582 (1614)
|+.++...|+..++..
T Consensus 251 p~~~~r~~il~~~~~~ 266 (357)
T 3d8b_A 251 PEASARKQIVINLMSK 266 (357)
T ss_dssp CCHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHhh
Confidence 9999999998776653
No 53
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.64 E-value=3.3e-07 Score=103.36 Aligned_cols=142 Identities=17% Similarity=0.231 Sum_probs=91.3
Q ss_pred HHHHHHHhcCC---CEEEecCCCCchHHHHHHHHhcCCCC-----------------------ceEEEEcccCCCHHHHH
Q psy568 407 SLLYTWLAEHK---PLVLCGPPGSGKTMTLLSALRALPDM-----------------------EVVSLNFSSATTPELLL 460 (1614)
Q Consensus 407 ~ll~~~l~~~~---~vLL~Gp~GtGKT~lv~~~~~~l~~~-----------------------~~~~i~~s~~t~~~~l~ 460 (1614)
..+..++..+. +++|+||+|+|||++++.+++.+... .+..++.+.......+.
T Consensus 33 ~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (250)
T 1njg_A 33 TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTR 112 (250)
T ss_dssp HHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCSSEEEEETTCGGGHHHHH
T ss_pred HHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCCcceEEecCcccccHHHHH
Confidence 34445555554 69999999999999999888754211 12333333222333333
Q ss_pred hHhhcccceeecCCccccccccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEee
Q psy568 461 KTFDHYCEYRKTPNGVILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGAC 540 (1614)
Q Consensus 461 ~~~~~~~~~~~~~~g~~~~p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~ 540 (1614)
..+... . ..+. .+++.+++|||++.. .....+.|..+++.. ..++.+|+++
T Consensus 113 ~~~~~~-~---------~~~~-~~~~~vlviDe~~~l------~~~~~~~l~~~l~~~------------~~~~~~i~~t 163 (250)
T 1njg_A 113 DLLDNV-Q---------YAPA-RGRFKVYLIDEVHML------SRHSFNALLKTLEEP------------PEHVKFLLAT 163 (250)
T ss_dssp HHHHSC-C---------CSCS-SSSSEEEEEETGGGS------CHHHHHHHHHHHHSC------------CTTEEEEEEE
T ss_pred HHHHHh-h---------hchh-cCCceEEEEECcccc------cHHHHHHHHHHHhcC------------CCceEEEEEe
Confidence 333211 0 1111 345688899999873 333556666666642 1357788888
Q ss_pred cCCCCCCCCCCcccccccccEEEecCCChhHHHHHHHHHHHh
Q psy568 541 NPPTDPGRKPLSHRFLRHVPVIYVDYPGETSLKQIYGTFSRA 582 (1614)
Q Consensus 541 n~~~~~g~~~l~~r~~r~f~~i~i~~p~~~~l~~I~~~~~~~ 582 (1614)
+.+. .+.+.+.+|+..+.++.|+.+++..++..++..
T Consensus 164 ~~~~-----~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~ 200 (250)
T 1njg_A 164 TDPQ-----KLPVTILSRCLQFHLKALDVEQIRHQLEHILNE 200 (250)
T ss_dssp SCGG-----GSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHH
T ss_pred CChH-----hCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHh
Confidence 7653 578888999999999999999999998876653
No 54
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.64 E-value=2.9e-07 Score=116.00 Aligned_cols=143 Identities=21% Similarity=0.238 Sum_probs=95.0
Q ss_pred CCCEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCCHHHHHhHhhcccceeecCCcccccc----ccCCceEEEEe
Q psy568 416 HKPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTPELLLKTFDHYCEYRKTPNGVILSP----IQLGKWLVLFC 491 (1614)
Q Consensus 416 ~~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~~~~l~~~~~~~~~~~~~~~g~~~~p----~~~gk~~vlfi 491 (1614)
.+++||+||||||||++++.+++.+ +..++.++++...+...+...+......... .+.+-.. ...++..|+||
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l-~~~~i~in~s~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~vliI 154 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQEL-GYDILEQNASDVRSKTLLNAGVKNALDNMSV-VGYFKHNEEAQNLNGKHFVIIM 154 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHT-TCEEEEECTTSCCCHHHHHHTGGGGTTBCCS-TTTTTC----CCSSTTSEEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc-CCCEEEEeCCCcchHHHHHHHHHHHhccccH-HHHHhhhhhhhhccCCCeEEEE
Confidence 3789999999999999999999888 7888999998877766554444322211110 1111111 12356789999
Q ss_pred ccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCCCcccccccccEEEecCCChhH
Q psy568 492 DEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLRHVPVIYVDYPGETS 571 (1614)
Q Consensus 492 Ddin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r~f~~i~i~~p~~~~ 571 (1614)
||++....+ .+..+..|.++++.. +..+|+++|... ...+ +++.|++..+.++.|+.++
T Consensus 155 DEid~l~~~---~~~~l~~L~~~l~~~--------------~~~iIli~~~~~---~~~l-~~l~~r~~~i~f~~~~~~~ 213 (516)
T 1sxj_A 155 DEVDGMSGG---DRGGVGQLAQFCRKT--------------STPLILICNERN---LPKM-RPFDRVCLDIQFRRPDANS 213 (516)
T ss_dssp CSGGGCCTT---STTHHHHHHHHHHHC--------------SSCEEEEESCTT---SSTT-GGGTTTSEEEECCCCCHHH
T ss_pred ECCCccchh---hHHHHHHHHHHHHhc--------------CCCEEEEEcCCC---Cccc-hhhHhceEEEEeCCCCHHH
Confidence 999864432 344567777777752 123455555432 1123 3578888899999999999
Q ss_pred HHHHHHHHHH
Q psy568 572 LKQIYGTFSR 581 (1614)
Q Consensus 572 l~~I~~~~~~ 581 (1614)
+..++..++.
T Consensus 214 ~~~~L~~i~~ 223 (516)
T 1sxj_A 214 IKSRLMTIAI 223 (516)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999877654
No 55
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=98.63 E-value=5.5e-08 Score=111.13 Aligned_cols=139 Identities=22% Similarity=0.312 Sum_probs=88.1
Q ss_pred cCCCEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCC------HHHHHhHhhcccceeecCCccccccccCCceEE
Q psy568 415 EHKPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATT------PELLLKTFDHYCEYRKTPNGVILSPIQLGKWLV 488 (1614)
Q Consensus 415 ~~~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~------~~~l~~~~~~~~~~~~~~~g~~~~p~~~gk~~v 488 (1614)
...+++|+||||||||++++.++..+ +.+++.++++...+ ...+...+. .+ ..+...+
T Consensus 44 ~~~~vll~G~~GtGKT~la~~la~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~--------------~a-~~~~~~i 107 (257)
T 1lv7_A 44 IPKGVLMVGPPGTGKTLLAKAIAGEA-KVPFFTISGSDFVEMFVGVGASRVRDMFE--------------QA-KKAAPCI 107 (257)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH-TCCEEEECSCSSTTSCCCCCHHHHHHHHH--------------HH-HTTCSEE
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHc-CCCEEEEeHHHHHHHhhhhhHHHHHHHHH--------------HH-HHcCCee
Confidence 36789999999999999999888876 56677787764322 112222221 11 1234578
Q ss_pred EEeccCCCCCcccc-----CcccHHHHHHHHHHc-CceeeCCCCceEeecCeEEEEeecCCCCCCCCCCcccccc--ccc
Q psy568 489 LFCDEINLPDMDKY-----ATQRVISFLRQLIEQ-RGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLR--HVP 560 (1614)
Q Consensus 489 lfiDdin~p~~d~~-----g~q~~lelLrqlld~-~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r--~f~ 560 (1614)
+|+||++....... +.......+.+++.. +++.. ..++.+|+|+|.+. .+++++.| ||.
T Consensus 108 l~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~--------~~~~~vI~~tn~~~-----~l~~~l~r~~rf~ 174 (257)
T 1lv7_A 108 IFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG--------NEGIIVIAATNRPD-----VLDPALLRPGRFD 174 (257)
T ss_dssp EEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCS--------SSCEEEEEEESCTT-----TSCGGGGSTTSSC
T ss_pred ehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCccc--------CCCEEEEEeeCCch-----hCCHHHcCCCcCC
Confidence 99999964322211 111122333333322 11111 13688999999885 68888887 776
Q ss_pred -EEEecCCChhHHHHHHHHHHHh
Q psy568 561 -VIYVDYPGETSLKQIYGTFSRA 582 (1614)
Q Consensus 561 -~i~i~~p~~~~l~~I~~~~~~~ 582 (1614)
.+.++.|+.++...|+..++..
T Consensus 175 ~~i~i~~P~~~~r~~il~~~~~~ 197 (257)
T 1lv7_A 175 RQVVVGLPDVRGREQILKVHMRR 197 (257)
T ss_dssp EEEECCCCCHHHHHHHHHHHHTT
T ss_pred eEEEeCCCCHHHHHHHHHHHHhc
Confidence 7889999999999988776543
No 56
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.61 E-value=3.2e-09 Score=114.70 Aligned_cols=129 Identities=19% Similarity=0.250 Sum_probs=81.6
Q ss_pred CCCEEEecCCCCchHHHHHHHHhcC---------CCCceEEEEcccCCC----HHHHHhHhhcccceeecCCcccccccc
Q psy568 416 HKPLVLCGPPGSGKTMTLLSALRAL---------PDMEVVSLNFSSATT----PELLLKTFDHYCEYRKTPNGVILSPIQ 482 (1614)
Q Consensus 416 ~~~vLL~Gp~GtGKT~lv~~~~~~l---------~~~~~~~i~~s~~t~----~~~l~~~~~~~~~~~~~~~g~~~~p~~ 482 (1614)
+.+++|+||+|||||++++.+++.+ .+..++.++++.... .......+...+.. .. .
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~---~ 112 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSLIAGAKYRGDFEERLKSILKE-------VQ---D 112 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHHHHHHHCCSHHHHHHHHHHHHHH-------HH---H
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeHHHhhcCCCchhHHHHHHHHHHHH-------HH---h
Confidence 5789999999999999999988765 245566666543221 11111111111100 00 1
Q ss_pred CCceEEEEeccCCCCCcc---ccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCCCcccccccc
Q psy568 483 LGKWLVLFCDEINLPDMD---KYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLRHV 559 (1614)
Q Consensus 483 ~gk~~vlfiDdin~p~~d---~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r~f 559 (1614)
.++..++||||++..... ..+...+..+|+.+++.+ ++.+|+++|++.......+++++.+||
T Consensus 113 ~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~~l~~~~~~~--------------~~~ii~~~~~~~~~~~~~~~~~l~~R~ 178 (187)
T 2p65_A 113 AEGQVVMFIDEIHTVVGAGAVAEGALDAGNILKPMLARG--------------ELRCIGATTVSEYRQFIEKDKALERRF 178 (187)
T ss_dssp TTTSEEEEETTGGGGSSSSSSCTTSCCTHHHHHHHHHTT--------------CSCEEEEECHHHHHHHTTTCHHHHHHE
T ss_pred cCCceEEEEeCHHHhcccccccccchHHHHHHHHHHhcC--------------CeeEEEecCHHHHHHHHhccHHHHHhc
Confidence 134578899999975422 113466788888887652 466889988753111235789999999
Q ss_pred cEEEecCCC
Q psy568 560 PVIYVDYPG 568 (1614)
Q Consensus 560 ~~i~i~~p~ 568 (1614)
..+.++.|+
T Consensus 179 ~~i~i~~p~ 187 (187)
T 2p65_A 179 QQILVEQPS 187 (187)
T ss_dssp EEEECCSCC
T ss_pred CcccCCCCC
Confidence 999999885
No 57
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=98.60 E-value=6.9e-08 Score=117.00 Aligned_cols=155 Identities=16% Similarity=0.139 Sum_probs=91.0
Q ss_pred cCCCEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCCHHHHH----hHhhcccceeecCCccccccccCCceEEEE
Q psy568 415 EHKPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTPELLL----KTFDHYCEYRKTPNGVILSPIQLGKWLVLF 490 (1614)
Q Consensus 415 ~~~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~~~~l~----~~~~~~~~~~~~~~g~~~~p~~~gk~~vlf 490 (1614)
.+.++||+||||||||++++.+++.+ +.+++.++++..+.+.... +.+....... .|.+.. ....|+|
T Consensus 71 ~~~~ill~Gp~GtGKT~la~~la~~l-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~---~~~~~~----~~~~vl~ 142 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMAQTLAKHL-DIPIAISDATSLTEAGYVGEDVENILTRLLQAS---DWNVQK----AQKGIVF 142 (376)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT-TCCEEEEEGGGCC--------CTHHHHHHHHHT---TTCHHH----HTTSEEE
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHh-CCCEEEecchhhhhcCcCCccHHHHHHHHHhhc---cchhhh----cCCeEEE
Confidence 46789999999999999999999887 7788889987654322111 1111111000 121111 1236888
Q ss_pred eccCCCCCccccC--------cccHHHHHHHHHHcCceeeC-CCC--------ceEeecCeEEEEeecCCC---------
Q psy568 491 CDEINLPDMDKYA--------TQRVISFLRQLIEQRGFYRP-ADK--------QWVSLERIQCVGACNPPT--------- 544 (1614)
Q Consensus 491 iDdin~p~~d~~g--------~q~~lelLrqlld~~~~~~~-~~~--------~~~~~~~~~~iaa~n~~~--------- 544 (1614)
|||++....+..+ ...+...|.++++.+.+..+ .++ ......++.+|+|+|...
T Consensus 143 iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~ 222 (376)
T 1um8_A 143 IDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRT 222 (376)
T ss_dssp EETGGGC--------------CHHHHHHHHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSC
T ss_pred EcCHHHHhhhcCCCceecccchHHHHHHHHHHhhccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHh
Confidence 9999975443111 11277888899985532111 111 113335677888876311
Q ss_pred ------CCC---------------------CCCCcccccccc-cEEEecCCChhHHHHHHH
Q psy568 545 ------DPG---------------------RKPLSHRFLRHV-PVIYVDYPGETSLKQIYG 577 (1614)
Q Consensus 545 ------~~g---------------------~~~l~~r~~r~f-~~i~i~~p~~~~l~~I~~ 577 (1614)
... ...+.+.|.+|| .++.+++++.+++..|+.
T Consensus 223 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l~~R~~~~i~~~~l~~~~l~~i~~ 283 (376)
T 1um8_A 223 TQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPELIGRLPVLSTLDSISLEAMVDILQ 283 (376)
T ss_dssp SSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHHHTTCCEEEECCCCCHHHHHHHHH
T ss_pred cccccCCCchhhhccchhHHHhhcCHHHHhhcCCChHHhcCCCceeeccCCCHHHHHHHHh
Confidence 000 224678888999 588999999999999986
No 58
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.58 E-value=3.6e-08 Score=116.63 Aligned_cols=167 Identities=18% Similarity=0.281 Sum_probs=103.6
Q ss_pred ceeecCCCCccccccccccCCcceeeeCcchhhHHHHHHHHHhcCC--CEEEecCCCCchHHHHHHHHhcCCC----Cce
Q psy568 372 EWVPWSNKVPQIEVETQKVAASDVVVPTLDTVRHESLLYTWLAEHK--PLVLCGPPGSGKTMTLLSALRALPD----MEV 445 (1614)
Q Consensus 372 ~~~~w~~~~~~~~~~~~~~~~~~~~vpT~~t~r~~~ll~~~l~~~~--~vLL~Gp~GtGKT~lv~~~~~~l~~----~~~ 445 (1614)
.|.||.+...+..+. + ++... .....+..++..+. +++|+||+|||||++++.+++.+.+ ..+
T Consensus 3 ~~~~~~~k~~p~~~~-------~-~~g~~---~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~ 71 (319)
T 2chq_A 3 NFEIWVEKYRPRTLD-------E-VVGQD---EVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNF 71 (319)
T ss_dssp ---CTTTTTSCSSGG-------G-SCSCH---HHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHC
T ss_pred ccccHHHhcCCCCHH-------H-HhCCH---HHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCe
Confidence 467888876443322 1 22221 22334444555554 7999999999999999999886521 246
Q ss_pred EEEEcccCCCHHHHHhHhhcccceeecCCccccccccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCC
Q psy568 446 VSLNFSSATTPELLLKTFDHYCEYRKTPNGVILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPAD 525 (1614)
Q Consensus 446 ~~i~~s~~t~~~~l~~~~~~~~~~~~~~~g~~~~p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~ 525 (1614)
+.++++.......+...+..... ..|...+++.|++|||++.... ...+.|+.+++..
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~vliiDe~~~l~~------~~~~~L~~~le~~------- 129 (319)
T 2chq_A 72 IEMNASDERGIDVVRHKIKEFAR---------TAPIGGAPFKIIFLDEADALTA------DAQAALRRTMEMY------- 129 (319)
T ss_dssp EEEETTSTTCTTTSSHHHHHHHH---------SCCSSSCCCEEEEEETGGGSCH------HHHHTTGGGTSSS-------
T ss_pred EEEeCccccChHHHHHHHHHHHh---------cCCCCCCCceEEEEeCCCcCCH------HHHHHHHHHHHhc-------
Confidence 77888765443333222221110 1122235568888999997432 2344455555431
Q ss_pred CceEeecCeEEEEeecCCCCCCCCCCcccccccccEEEecCCChhHHHHHHHHHHH
Q psy568 526 KQWVSLERIQCVGACNPPTDPGRKPLSHRFLRHVPVIYVDYPGETSLKQIYGTFSR 581 (1614)
Q Consensus 526 ~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r~f~~i~i~~p~~~~l~~I~~~~~~ 581 (1614)
..++.+|+++|.+. .+.+.+.+||.++.++.|+.+++..++..++.
T Consensus 130 -----~~~~~~i~~~~~~~-----~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~ 175 (319)
T 2chq_A 130 -----SKSCRFILSCNYVS-----RIIEPIQSRCAVFRFKPVPKEAMKKRLLEICE 175 (319)
T ss_dssp -----SSSEEEEEEESCGG-----GSCHHHHTTCEEEECCCCCHHHHHHHHHHHHH
T ss_pred -----CCCCeEEEEeCChh-----hcchHHHhhCeEEEecCCCHHHHHHHHHHHHH
Confidence 13678888888654 68899999999999999999999988776654
No 59
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.57 E-value=3.2e-07 Score=110.90 Aligned_cols=174 Identities=20% Similarity=0.226 Sum_probs=97.0
Q ss_pred eeeeCcchhhHHHHHHHHHhcC----CCEEEecCCCCchHHHHHHHHhcCCC-CceEEEEcccCC----CH-HHHHhHhh
Q psy568 395 VVVPTLDTVRHESLLYTWLAEH----KPLVLCGPPGSGKTMTLLSALRALPD-MEVVSLNFSSAT----TP-ELLLKTFD 464 (1614)
Q Consensus 395 ~~vpT~~t~r~~~ll~~~l~~~----~~vLL~Gp~GtGKT~lv~~~~~~l~~-~~~~~i~~s~~t----~~-~~l~~~~~ 464 (1614)
-+|......+....+...+..+ +++||+||||||||++++.+++.+.. .+++.+++.... .. ..+...+.
T Consensus 45 ~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (368)
T 3uk6_A 45 GMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQAFR 124 (368)
T ss_dssp TEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSCSSSCHHHHHHHHHH
T ss_pred hccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhhcccchhHHHHHHHH
Confidence 3555555544444444444443 47999999999999999999987743 366677754421 11 11111111
Q ss_pred cccceee------------------cCC---ccccc-------------------cccCCc----eEEEEeccCCCCCcc
Q psy568 465 HYCEYRK------------------TPN---GVILS-------------------PIQLGK----WLVLFCDEINLPDMD 500 (1614)
Q Consensus 465 ~~~~~~~------------------~~~---g~~~~-------------------p~~~gk----~~vlfiDdin~p~~d 500 (1614)
.....+. ... +.+.+ ....|+ +.|+||||++..
T Consensus 125 ~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~~l--- 201 (368)
T 3uk6_A 125 RSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHML--- 201 (368)
T ss_dssp HSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGGGS---
T ss_pred HHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhcccc---
Confidence 1000000 000 00000 001122 359999999983
Q ss_pred ccCcccHHHHHHHHHHcCceeeCCCCceE--eecCeEEEEeecCCCCCCCCCCcccccccccEEEecCCChhHHHHHHHH
Q psy568 501 KYATQRVISFLRQLIEQRGFYRPADKQWV--SLERIQCVGACNPPTDPGRKPLSHRFLRHVPVIYVDYPGETSLKQIYGT 578 (1614)
Q Consensus 501 ~~g~q~~lelLrqlld~~~~~~~~~~~~~--~~~~~~~iaa~n~~~~~g~~~l~~r~~r~f~~i~i~~p~~~~l~~I~~~ 578 (1614)
+....+.|+.+++.... ..+. .-..+.+|++++.. ....+++++.+||.++.++.|+.+++..|+..
T Consensus 202 ---~~~~~~~L~~~le~~~~-----~~~ii~t~~~~~~i~~t~~~---~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~ 270 (368)
T 3uk6_A 202 ---DIESFSFLNRALESDMA-----PVLIMATNRGITRIRGTSYQ---SPHGIPIDLLDRLLIVSTTPYSEKDTKQILRI 270 (368)
T ss_dssp ---BHHHHHHHHHHTTCTTC-----CEEEEEESCSEEECBTSSCE---EETTCCHHHHTTEEEEEECCCCHHHHHHHHHH
T ss_pred ---ChHHHHHHHHHhhCcCC-----CeeeeecccceeeeeccCCC---CcccCCHHHHhhccEEEecCCCHHHHHHHHHH
Confidence 34466777777764321 0000 01123334333211 12368999999999999999999999999887
Q ss_pred HHHh
Q psy568 579 FSRA 582 (1614)
Q Consensus 579 ~~~~ 582 (1614)
.+..
T Consensus 271 ~~~~ 274 (368)
T 3uk6_A 271 RCEE 274 (368)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6553
No 60
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.55 E-value=2.1e-07 Score=108.75 Aligned_cols=140 Identities=24% Similarity=0.343 Sum_probs=89.4
Q ss_pred cCCCEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCCH-----HHHHhHhhcccceeecCCccccccccCCceEEE
Q psy568 415 EHKPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTP-----ELLLKTFDHYCEYRKTPNGVILSPIQLGKWLVL 489 (1614)
Q Consensus 415 ~~~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~~-----~~l~~~~~~~~~~~~~~~g~~~~p~~~gk~~vl 489 (1614)
.+.++||+||||||||++++.+++.+ +.+++.++++..... ......+- ..+ ...+..++
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~-~~~~~~i~~~~l~~~~~~~~~~~~~~~~-------------~~~-~~~~~~vl 117 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATEC-SATFLNISAASLTSKYVGDGEKLVRALF-------------AVA-RHMQPSII 117 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT-TCEEEEEESTTTSSSSCSCHHHHHHHHH-------------HHH-HHTCSEEE
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHh-CCCeEEeeHHHHhhcccchHHHHHHHHH-------------HHH-HHcCCcEE
Confidence 46899999999999999999998877 677888888754321 11111110 001 12334789
Q ss_pred EeccCCCCCcccc-----CcccHH-HHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCCCccccccccc-EE
Q psy568 490 FCDEINLPDMDKY-----ATQRVI-SFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLRHVP-VI 562 (1614)
Q Consensus 490 fiDdin~p~~d~~-----g~q~~l-elLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r~f~-~i 562 (1614)
||||++......- ...... ++|..+ +..... ..-.++.+|+|+|.+. .+++.+.|||. .+
T Consensus 118 ~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l-~~~~~~-------~~~~~v~vi~~tn~~~-----~l~~~l~~R~~~~i 184 (297)
T 3b9p_A 118 FIDEVDSLLSERSSSEHEASRRLKTEFLVEF-DGLPGN-------PDGDRIVVLAATNRPQ-----ELDEAALRRFTKRV 184 (297)
T ss_dssp EEETGGGTSBCC-----CCSHHHHHHHHHHH-HHCC-------------CEEEEEEESCGG-----GBCHHHHHHCCEEE
T ss_pred EeccHHHhccccccCcchHHHHHHHHHHHHH-hccccc-------CCCCcEEEEeecCChh-----hCCHHHHhhCCeEE
Confidence 9999986433221 112222 333333 321110 0113588999999875 68999999995 88
Q ss_pred EecCCChhHHHHHHHHHHHh
Q psy568 563 YVDYPGETSLKQIYGTFSRA 582 (1614)
Q Consensus 563 ~i~~p~~~~l~~I~~~~~~~ 582 (1614)
.++.|+.++...|+..++..
T Consensus 185 ~~~~p~~~~r~~il~~~~~~ 204 (297)
T 3b9p_A 185 YVSLPDEQTRELLLNRLLQK 204 (297)
T ss_dssp ECCCCCHHHHHHHHHHHHGG
T ss_pred EeCCcCHHHHHHHHHHHHHh
Confidence 99999999999998776654
No 61
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.55 E-value=3.3e-07 Score=103.38 Aligned_cols=143 Identities=10% Similarity=0.072 Sum_probs=87.5
Q ss_pred HHHHHHHHHh--cCCCEEEecCCCCchHHHHHHHHhcCC--CCceEEEEcccCCCHHHHHhHhhcccceeecCCcccccc
Q psy568 405 HESLLYTWLA--EHKPLVLCGPPGSGKTMTLLSALRALP--DMEVVSLNFSSATTPELLLKTFDHYCEYRKTPNGVILSP 480 (1614)
Q Consensus 405 ~~~ll~~~l~--~~~~vLL~Gp~GtGKT~lv~~~~~~l~--~~~~~~i~~s~~t~~~~l~~~~~~~~~~~~~~~g~~~~p 480 (1614)
....+..++. .+.+++|+||||||||++++.++..+. +..+..++++.... .+... ...
T Consensus 39 ~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~------~~~~~-----------~~~ 101 (242)
T 3bos_A 39 LIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHAS------ISTAL-----------LEG 101 (242)
T ss_dssp HHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGG------SCGGG-----------GTT
T ss_pred HHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHH------HHHHH-----------HHh
Confidence 3344455554 478999999999999999998887652 45667777754221 11100 000
Q ss_pred ccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCCCcccccccc-
Q psy568 481 IQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLRHV- 559 (1614)
Q Consensus 481 ~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r~f- 559 (1614)
.++..++||||++....+.......+.++....+.+ .+.+|.+++.+. .....+.+++.+||
T Consensus 102 --~~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~--------------~~~ii~~~~~~~-~~~~~~~~~l~~r~~ 164 (242)
T 3bos_A 102 --LEQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQK--------------RGSLIVSASASP-MEAGFVLPDLVSRMH 164 (242)
T ss_dssp --GGGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHC--------------SCEEEEEESSCT-TTTTCCCHHHHHHHH
T ss_pred --ccCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcC--------------CCeEEEEcCCCH-HHHHHhhhhhhhHhh
Confidence 122357788999874433211222334444433322 123555555432 12234558899999
Q ss_pred --cEEEecCCChhHHHHHHHHHHH
Q psy568 560 --PVIYVDYPGETSLKQIYGTFSR 581 (1614)
Q Consensus 560 --~~i~i~~p~~~~l~~I~~~~~~ 581 (1614)
.++.++.|+.+++..++..++.
T Consensus 165 ~~~~i~l~~~~~~~~~~~l~~~~~ 188 (242)
T 3bos_A 165 WGLTYQLQPMMDDEKLAALQRRAA 188 (242)
T ss_dssp HSEEEECCCCCGGGHHHHHHHHHH
T ss_pred cCceEEeCCCCHHHHHHHHHHHHH
Confidence 8999999999999999887765
No 62
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=98.55 E-value=1.7e-08 Score=104.00 Aligned_cols=128 Identities=13% Similarity=0.101 Sum_probs=80.0
Q ss_pred hhhHHHHHHHHHhcCCCEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCCHHHHHhHhhcccceeecCCccccccc
Q psy568 402 TVRHESLLYTWLAEHKPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTPELLLKTFDHYCEYRKTPNGVILSPI 481 (1614)
Q Consensus 402 t~r~~~ll~~~l~~~~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~~~~l~~~~~~~~~~~~~~~g~~~~p~ 481 (1614)
..+....+..+...+.||+|+||||||||++++.+..... +++.++|+.... ....+.+ -.+
T Consensus 13 ~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~~--~~~~~~~~~~~~-~~~~~~~--------------~~a- 74 (143)
T 3co5_A 13 IQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNGT--PWVSPARVEYLI-DMPMELL--------------QKA- 74 (143)
T ss_dssp HHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTTS--CEECCSSTTHHH-HCHHHHH--------------HHT-
T ss_pred HHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC--CeEEechhhCCh-HhhhhHH--------------HhC-
Confidence 3455566667778899999999999999999887776553 677777764221 1122222 111
Q ss_pred cCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCCCcccccccccE
Q psy568 482 QLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLRHVPV 561 (1614)
Q Consensus 482 ~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r~f~~ 561 (1614)
.+ .++||||++.... .....|.++++.+. ..++++|+|+|.+...-+..+.++|..|+..
T Consensus 75 -~~--~~l~lDei~~l~~------~~q~~Ll~~l~~~~-----------~~~~~iI~~tn~~~~~~~~~~~~~L~~rl~~ 134 (143)
T 3co5_A 75 -EG--GVLYVGDIAQYSR------NIQTGITFIIGKAE-----------RCRVRVIASCSYAAGSDGISCEEKLAGLFSE 134 (143)
T ss_dssp -TT--SEEEEEECTTCCH------HHHHHHHHHHHHHT-----------TTTCEEEEEEEECTTTC--CHHHHHHHHSSS
T ss_pred -CC--CeEEEeChHHCCH------HHHHHHHHHHHhCC-----------CCCEEEEEecCCCHHHHHhCccHHHHHHhcC
Confidence 12 4678899998433 34455556666542 2368899999976321111166778888776
Q ss_pred EEecCC
Q psy568 562 IYVDYP 567 (1614)
Q Consensus 562 i~i~~p 567 (1614)
+.+..|
T Consensus 135 ~~i~lP 140 (143)
T 3co5_A 135 SVVRIP 140 (143)
T ss_dssp EEEEEC
T ss_pred cEEeCC
Confidence 555544
No 63
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.55 E-value=1.2e-07 Score=112.65 Aligned_cols=143 Identities=19% Similarity=0.304 Sum_probs=95.8
Q ss_pred HHHHHHHhcCC--CEEEecCCCCchHHHHHHHHhcCCC----CceEEEEcccCCCHHHHHhHhhcccceeecCCcccccc
Q psy568 407 SLLYTWLAEHK--PLVLCGPPGSGKTMTLLSALRALPD----MEVVSLNFSSATTPELLLKTFDHYCEYRKTPNGVILSP 480 (1614)
Q Consensus 407 ~ll~~~l~~~~--~vLL~Gp~GtGKT~lv~~~~~~l~~----~~~~~i~~s~~t~~~~l~~~~~~~~~~~~~~~g~~~~p 480 (1614)
..+..++..+. +++|+||+|+|||++++.+++.+.+ ..++.++++.......+...+..... ..|
T Consensus 35 ~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~ 105 (327)
T 1iqp_A 35 KRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFAR---------TKP 105 (327)
T ss_dssp HHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHHTTHHHHHHHHH---------SCC
T ss_pred HHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCchHHHHHHHHHHHh---------hCC
Confidence 34445666554 7999999999999999999886522 23566776644333333322221110 112
Q ss_pred ccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCCCccccccccc
Q psy568 481 IQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLRHVP 560 (1614)
Q Consensus 481 ~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r~f~ 560 (1614)
...+++.+++|||++.. +....+.|+.+++... .++.||+++|.+. .+.+.+.+||.
T Consensus 106 ~~~~~~~vliiDe~~~l------~~~~~~~L~~~le~~~------------~~~~~i~~~~~~~-----~l~~~l~sr~~ 162 (327)
T 1iqp_A 106 IGGASFKIIFLDEADAL------TQDAQQALRRTMEMFS------------SNVRFILSCNYSS-----KIIEPIQSRCA 162 (327)
T ss_dssp GGGCSCEEEEEETGGGS------CHHHHHHHHHHHHHTT------------TTEEEEEEESCGG-----GSCHHHHHTEE
T ss_pred cCCCCCeEEEEeCCCcC------CHHHHHHHHHHHHhcC------------CCCeEEEEeCCcc-----ccCHHHHhhCc
Confidence 22245678889999984 3335666777777521 3567888887654 58889999999
Q ss_pred EEEecCCChhHHHHHHHHHHH
Q psy568 561 VIYVDYPGETSLKQIYGTFSR 581 (1614)
Q Consensus 561 ~i~i~~p~~~~l~~I~~~~~~ 581 (1614)
++.++.|+.+++..++..++.
T Consensus 163 ~~~~~~l~~~~~~~~l~~~~~ 183 (327)
T 1iqp_A 163 IFRFRPLRDEDIAKRLRYIAE 183 (327)
T ss_dssp EEECCCCCHHHHHHHHHHHHH
T ss_pred EEEecCCCHHHHHHHHHHHHH
Confidence 999999999999998776654
No 64
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.55 E-value=1.9e-07 Score=113.54 Aligned_cols=156 Identities=17% Similarity=0.142 Sum_probs=99.4
Q ss_pred hcCCCEEEecCCCCchHHHHHHHHhcCC--------CCceEEEEcccCCCHHHHHhHhhcccceeecCCcc----cc---
Q psy568 414 AEHKPLVLCGPPGSGKTMTLLSALRALP--------DMEVVSLNFSSATTPELLLKTFDHYCEYRKTPNGV----IL--- 478 (1614)
Q Consensus 414 ~~~~~vLL~Gp~GtGKT~lv~~~~~~l~--------~~~~~~i~~s~~t~~~~l~~~~~~~~~~~~~~~g~----~~--- 478 (1614)
..+.+++|+||||||||++++.+++.+. +..++.++|....++..+...+-..+.......|. +.
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l 121 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERL 121 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHH
Confidence 3467899999999999999999887652 45678899988877766554433222110000010 00
Q ss_pred --ccccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCCCccccc
Q psy568 479 --SPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFL 556 (1614)
Q Consensus 479 --~p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~ 556 (1614)
.....+++.++||||++...... ...+.|..+++...-+. ...++.+|+++|.+. ....+++++.
T Consensus 122 ~~~l~~~~~~~vlilDEi~~l~~~~----~~~~~l~~l~~~~~~~~-------~~~~~~~I~~t~~~~--~~~~l~~~l~ 188 (387)
T 2v1u_A 122 VKRLSRLRGIYIIVLDEIDFLPKRP----GGQDLLYRITRINQELG-------DRVWVSLVGITNSLG--FVENLEPRVK 188 (387)
T ss_dssp HHHHTTSCSEEEEEEETTTHHHHST----THHHHHHHHHHGGGCC------------CEEEEECSCST--TSSSSCHHHH
T ss_pred HHHHhccCCeEEEEEccHhhhcccC----CCChHHHhHhhchhhcC-------CCceEEEEEEECCCc--hHhhhCHHHH
Confidence 00124567899999999732211 03355555554321111 023678899998763 2346889999
Q ss_pred ccc--cEEEecCCChhHHHHHHHHHHHh
Q psy568 557 RHV--PVIYVDYPGETSLKQIYGTFSRA 582 (1614)
Q Consensus 557 r~f--~~i~i~~p~~~~l~~I~~~~~~~ 582 (1614)
+|| ..+.++.|+.+++..|+...+..
T Consensus 189 ~r~~~~~i~l~~l~~~~~~~il~~~~~~ 216 (387)
T 2v1u_A 189 SSLGEVELVFPPYTAPQLRDILETRAEE 216 (387)
T ss_dssp TTTTSEECCBCCCCHHHHHHHHHHHHHH
T ss_pred hcCCCeEEeeCCCCHHHHHHHHHHHHHh
Confidence 999 67999999999999999887653
No 65
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.53 E-value=1.9e-07 Score=110.66 Aligned_cols=139 Identities=12% Similarity=0.132 Sum_probs=84.2
Q ss_pred CCCEEEecCCCCchHHHHHHHHhcCC--CCceEEEEcccCCCHHHHHhHhhcccceeecCCccccccccCCceEEEEecc
Q psy568 416 HKPLVLCGPPGSGKTMTLLSALRALP--DMEVVSLNFSSATTPELLLKTFDHYCEYRKTPNGVILSPIQLGKWLVLFCDE 493 (1614)
Q Consensus 416 ~~~vLL~Gp~GtGKT~lv~~~~~~l~--~~~~~~i~~s~~t~~~~l~~~~~~~~~~~~~~~g~~~~p~~~gk~~vlfiDd 493 (1614)
+.+++|+||||||||++++.++..+. +.+++.++++.. ...+.+.+..... +.+.... ++..++||||
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~~------~~~~~~~--~~~~vL~iDE 106 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDF--AQAMVEHLKKGTI------NEFRNMY--KSVDLLLLDD 106 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHH--HHHHHHHHHHTCH------HHHHHHH--HTCSEEEEEC
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHH--HHHHHHHHHcCcH------HHHHHHh--cCCCEEEEcC
Confidence 36999999999999999998887652 566777877543 2222222221100 1111111 1235888999
Q ss_pred CCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCCCcccccccc---cEEEecCCChh
Q psy568 494 INLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLRHV---PVIYVDYPGET 570 (1614)
Q Consensus 494 in~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r~f---~~i~i~~p~~~ 570 (1614)
++....+....+..+.++..+.+.+. ..++++.+++. .-..++++|.+|| .++.+++ +.+
T Consensus 107 i~~l~~~~~~~~~l~~~l~~~~~~~~--------------~iii~~~~~~~--~l~~l~~~L~sR~~~~~~i~l~~-~~~ 169 (324)
T 1l8q_A 107 VQFLSGKERTQIEFFHIFNTLYLLEK--------------QIILASDRHPQ--KLDGVSDRLVSRFEGGILVEIEL-DNK 169 (324)
T ss_dssp GGGGTTCHHHHHHHHHHHHHHHHTTC--------------EEEEEESSCGG--GCTTSCHHHHHHHHTSEEEECCC-CHH
T ss_pred cccccCChHHHHHHHHHHHHHHHCCC--------------eEEEEecCChH--HHHHhhhHhhhcccCceEEEeCC-CHH
Confidence 99754432222334444444443221 23444444442 2236899999999 6889999 999
Q ss_pred HHHHHHHHHHH
Q psy568 571 SLKQIYGTFSR 581 (1614)
Q Consensus 571 ~l~~I~~~~~~ 581 (1614)
++..|+...+.
T Consensus 170 e~~~il~~~~~ 180 (324)
T 1l8q_A 170 TRFKIIKEKLK 180 (324)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999877665
No 66
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=98.49 E-value=4.4e-08 Score=112.73 Aligned_cols=142 Identities=21% Similarity=0.266 Sum_probs=84.4
Q ss_pred cCCCEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCCHHHHHhHhhcccceeecCCccccccccCCceEEEEeccC
Q psy568 415 EHKPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTPELLLKTFDHYCEYRKTPNGVILSPIQLGKWLVLFCDEI 494 (1614)
Q Consensus 415 ~~~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~~~~l~~~~~~~~~~~~~~~g~~~~p~~~gk~~vlfiDdi 494 (1614)
...++||+||||||||++++.++..+ +.+++.++++...+. +.+...... .+.+-.+ ......|+||||+
T Consensus 43 ~~~~vll~G~~GtGKT~la~~la~~~-~~~~~~v~~~~~~~~------~~~~~~~~~--~~~~~~a-~~~~~~vl~iDEi 112 (268)
T 2r62_A 43 IPKGVLLVGPPGTGKTLLAKAVAGEA-HVPFFSMGGSSFIEM------FVGLGASRV--RDLFETA-KKQAPSIIFIDEI 112 (268)
T ss_dssp CCSCCCCBCSSCSSHHHHHHHHHHHH-TCCCCCCCSCTTTTS------CSSSCSSSS--STTHHHH-HHSCSCEEEESCG
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHh-CCCEEEechHHHHHh------hcchHHHHH--HHHHHHH-HhcCCeEEEEeCh
Confidence 35789999999999999999998876 556666666533221 111100000 1211111 1223478999999
Q ss_pred CCCCcccc----------CcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCCCcccccc--ccc-E
Q psy568 495 NLPDMDKY----------ATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLR--HVP-V 561 (1614)
Q Consensus 495 n~p~~d~~----------g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r--~f~-~ 561 (1614)
+....... ..+...++|..+ +. +.. ...++.+|+|+|.+. .+++++.| ||. .
T Consensus 113 d~l~~~~~~~~~~~~~~~~~~~~~~ll~~l-~~--~~~-------~~~~v~vi~ttn~~~-----~ld~~l~r~~Rf~~~ 177 (268)
T 2r62_A 113 DAIGKSRAAGGVVSGNDEREQTLNQLLAEM-DG--FGS-------ENAPVIVLAATNRPE-----ILDPALMRPGRFDRQ 177 (268)
T ss_dssp GGTTC----------CCCSCSSTTTTTTTT-TC--SSC-------SCSCCEEEECBSCCT-----TSCGGGGSSSSSCCC
T ss_pred hhhcccccccccCCCchhHHHHHHHHHHHh-hC--ccc-------CCCCEEEEEecCCch-----hcCHhHcCCCCCCeE
Confidence 86433210 011111222211 11 000 113588999999875 58888888 785 7
Q ss_pred EEecCCChhHHHHHHHHHHH
Q psy568 562 IYVDYPGETSLKQIYGTFSR 581 (1614)
Q Consensus 562 i~i~~p~~~~l~~I~~~~~~ 581 (1614)
+.++.|+.++...|+..++.
T Consensus 178 i~i~~p~~~~r~~il~~~~~ 197 (268)
T 2r62_A 178 VLVDKPDFNGRVEILKVHIK 197 (268)
T ss_dssp CBCCCCCTTTHHHHHHHHTS
T ss_pred EEecCcCHHHHHHHHHHHHh
Confidence 89999999999999876654
No 67
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.48 E-value=3.3e-08 Score=102.06 Aligned_cols=130 Identities=12% Similarity=0.020 Sum_probs=80.5
Q ss_pred chhhHHHHHHHHHhcCCCEEEecCCCCchHHHHHHHHhcCC--CCceEEEEcccCCCHHHHHhHhhcccceeecCCcccc
Q psy568 401 DTVRHESLLYTWLAEHKPLVLCGPPGSGKTMTLLSALRALP--DMEVVSLNFSSATTPELLLKTFDHYCEYRKTPNGVIL 478 (1614)
Q Consensus 401 ~t~r~~~ll~~~l~~~~~vLL~Gp~GtGKT~lv~~~~~~l~--~~~~~~i~~s~~t~~~~l~~~~~~~~~~~~~~~g~~~ 478 (1614)
...+....+..+...+.||||+||||||||++++.+..... +.+++ ++|+...+.....+.++
T Consensus 9 ~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~~~~~~~~~-------------- 73 (145)
T 3n70_A 9 WINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNAPQLNDFIA-------------- 73 (145)
T ss_dssp HHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTSSCHHHHHH--------------
T ss_pred HHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcchhhhcHHH--------------
Confidence 34455556667778899999999999999999988887542 45677 99987655433333222
Q ss_pred ccccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCC--CCCCCccccc
Q psy568 479 SPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDP--GRKPLSHRFL 556 (1614)
Q Consensus 479 ~p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~--g~~~l~~r~~ 556 (1614)
.+ .+ .++||||++.... .....|..++... ..++++|+|+|.+... ....+.+.|.
T Consensus 74 ~a--~~--g~l~ldei~~l~~------~~q~~Ll~~l~~~------------~~~~~~I~~t~~~~~~~~~~~~~~~~L~ 131 (145)
T 3n70_A 74 LA--QG--GTLVLSHPEHLTR------EQQYHLVQLQSQE------------HRPFRLIGIGDTSLVELAASNHIIAELY 131 (145)
T ss_dssp HH--TT--SCEEEECGGGSCH------HHHHHHHHHHHSS------------SCSSCEEEEESSCHHHHHHHSCCCHHHH
T ss_pred Hc--CC--cEEEEcChHHCCH------HHHHHHHHHHhhc------------CCCEEEEEECCcCHHHHHHcCCCCHHHH
Confidence 11 12 3678899997433 3444455555221 1357889999875210 0124556666
Q ss_pred ccccEEEecCC
Q psy568 557 RHVPVIYVDYP 567 (1614)
Q Consensus 557 r~f~~i~i~~p 567 (1614)
.++..+.+..|
T Consensus 132 ~rl~~~~i~lP 142 (145)
T 3n70_A 132 YCFAMTQIACL 142 (145)
T ss_dssp HHHHHHEEECC
T ss_pred HHhcCCEEeCC
Confidence 66664444444
No 68
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.48 E-value=7.5e-07 Score=108.28 Aligned_cols=155 Identities=17% Similarity=0.232 Sum_probs=97.5
Q ss_pred HHHHHHHHhcC--CCEEEecCCCCchHHHHHHHHhcC---------C-CCceEEEEcccCC-CHHHHHhHhhccc-ceee
Q psy568 406 ESLLYTWLAEH--KPLVLCGPPGSGKTMTLLSALRAL---------P-DMEVVSLNFSSAT-TPELLLKTFDHYC-EYRK 471 (1614)
Q Consensus 406 ~~ll~~~l~~~--~~vLL~Gp~GtGKT~lv~~~~~~l---------~-~~~~~~i~~s~~t-~~~~l~~~~~~~~-~~~~ 471 (1614)
...+..++..+ .+++|+||+|||||++++.+++.+ . +..++.++|+... ++..+...+-..+ ....
T Consensus 33 ~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~ 112 (384)
T 2qby_B 33 AIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAGKLTGFSV 112 (384)
T ss_dssp HHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHHHHHHHHHHHCSCC
T ss_pred HHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHHHHHHHHHhcCCCC
Confidence 33444554444 459999999999999999988754 1 5678889988776 6655544432221 0000
Q ss_pred cCCc----c----ccccccCCceEEEEeccCCCCCccccCcccHHHH-HHHHHHcCceeeCCCCceEeecCeEEEEeecC
Q psy568 472 TPNG----V----ILSPIQLGKWLVLFCDEINLPDMDKYATQRVISF-LRQLIEQRGFYRPADKQWVSLERIQCVGACNP 542 (1614)
Q Consensus 472 ~~~g----~----~~~p~~~gk~~vlfiDdin~p~~d~~g~q~~lel-Lrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~ 542 (1614)
...| . +.......+ .|+||||++..... ..+ +. +..+++.. .++.+|+|+|.
T Consensus 113 ~~~~~~~~~~~~~l~~~l~~~~-~vlilDEi~~l~~~--~~~---~~~l~~l~~~~-------------~~~~iI~~t~~ 173 (384)
T 2qby_B 113 PKHGINLGEYIDKIKNGTRNIR-AIIYLDEVDTLVKR--RGG---DIVLYQLLRSD-------------ANISVIMISND 173 (384)
T ss_dssp CSSSSCTHHHHHHHHHHHSSSC-EEEEEETTHHHHHS--TTS---HHHHHHHHTSS-------------SCEEEEEECSS
T ss_pred CCCCCCHHHHHHHHHHHhccCC-CEEEEECHHHhccC--CCC---ceeHHHHhcCC-------------cceEEEEEECC
Confidence 0001 0 001111122 38999999863221 112 33 55554421 46889999987
Q ss_pred CCCCCCCCCcccccccc-cEEEecCCChhHHHHHHHHHHH
Q psy568 543 PTDPGRKPLSHRFLRHV-PVIYVDYPGETSLKQIYGTFSR 581 (1614)
Q Consensus 543 ~~~~g~~~l~~r~~r~f-~~i~i~~p~~~~l~~I~~~~~~ 581 (1614)
+. ....+++++.+|| ..+.+++++.+++..|+...+.
T Consensus 174 ~~--~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~ 211 (384)
T 2qby_B 174 IN--VRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAE 211 (384)
T ss_dssp TT--TTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHH
T ss_pred Cc--hHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHH
Confidence 63 3346888888887 4899999999999999988765
No 69
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.48 E-value=3.3e-07 Score=108.45 Aligned_cols=145 Identities=16% Similarity=0.218 Sum_probs=99.0
Q ss_pred HHHHHHHHhcCC--CEEEecCCCCchHHHHHHHHhcCC----CCceEEEEcccCCCHHHHHhHhhcccceeecCCccccc
Q psy568 406 ESLLYTWLAEHK--PLVLCGPPGSGKTMTLLSALRALP----DMEVVSLNFSSATTPELLLKTFDHYCEYRKTPNGVILS 479 (1614)
Q Consensus 406 ~~ll~~~l~~~~--~vLL~Gp~GtGKT~lv~~~~~~l~----~~~~~~i~~s~~t~~~~l~~~~~~~~~~~~~~~g~~~~ 479 (1614)
...+..++..+. +++|+||+|+|||++++.+++.+. +..++.++++...+...+...+....... .
T Consensus 30 ~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--------~ 101 (323)
T 1sxj_B 30 IDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVVRNQIKHFAQKK--------L 101 (323)
T ss_dssp HHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHHHHTHHHHHHHBC--------C
T ss_pred HHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChHHHHHHHHHHHhcc--------c
Confidence 334555566553 599999999999999999987652 23466777776656666655443221100 1
Q ss_pred cccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCCCcccccccc
Q psy568 480 PIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLRHV 559 (1614)
Q Consensus 480 p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r~f 559 (1614)
+...|++.|++|||++.... ...+.|+.+++... .++.+|.++|.+. .+.+++.+|+
T Consensus 102 ~~~~~~~~viiiDe~~~l~~------~~~~~L~~~le~~~------------~~~~~il~~~~~~-----~l~~~l~sr~ 158 (323)
T 1sxj_B 102 HLPPGKHKIVILDEADSMTA------GAQQALRRTMELYS------------NSTRFAFACNQSN-----KIIEPLQSQC 158 (323)
T ss_dssp CCCTTCCEEEEEESGGGSCH------HHHHTTHHHHHHTT------------TTEEEEEEESCGG-----GSCHHHHTTS
T ss_pred cCCCCCceEEEEECcccCCH------HHHHHHHHHHhccC------------CCceEEEEeCChh-----hchhHHHhhc
Confidence 11134568888999997432 34555666766521 3577888887653 6889999999
Q ss_pred cEEEecCCChhHHHHHHHHHHH
Q psy568 560 PVIYVDYPGETSLKQIYGTFSR 581 (1614)
Q Consensus 560 ~~i~i~~p~~~~l~~I~~~~~~ 581 (1614)
.++.++.|+.+++..++..++.
T Consensus 159 ~~i~~~~~~~~~~~~~l~~~~~ 180 (323)
T 1sxj_B 159 AILRYSKLSDEDVLKRLLQIIK 180 (323)
T ss_dssp EEEECCCCCHHHHHHHHHHHHH
T ss_pred eEEeecCCCHHHHHHHHHHHHH
Confidence 9999999999999999877654
No 70
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.45 E-value=5.2e-07 Score=108.29 Aligned_cols=149 Identities=17% Similarity=0.227 Sum_probs=97.7
Q ss_pred HHHHHHhcC--CCEEEecCCCCchHHHHHHHHhcCC-----CCceEEEEcccCCCHHHHHhHhhcccceeecC---Cccc
Q psy568 408 LLYTWLAEH--KPLVLCGPPGSGKTMTLLSALRALP-----DMEVVSLNFSSATTPELLLKTFDHYCEYRKTP---NGVI 477 (1614)
Q Consensus 408 ll~~~l~~~--~~vLL~Gp~GtGKT~lv~~~~~~l~-----~~~~~~i~~s~~t~~~~l~~~~~~~~~~~~~~---~g~~ 477 (1614)
.+..++..+ .+++|+||||||||++++.+++.+. ...+..++++.......+...+.......... ....
T Consensus 48 ~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (353)
T 1sxj_D 48 VLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLE 127 (353)
T ss_dssp HHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHHTTHHHHHHHSCCCCCCTTHHH
T ss_pred HHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHHHHHHHHHhhhcccccchhhcc
Confidence 455566666 6699999999999999998887652 23466777776655555443332211100000 0000
Q ss_pred cccccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCCCcccccc
Q psy568 478 LSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLR 557 (1614)
Q Consensus 478 ~~p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r 557 (1614)
..| .+...|+||||++.... ...+.|+.+++... .+..||.++|.+. .+.+++.+
T Consensus 128 ~~~--~~~~~vliiDE~~~l~~------~~~~~Ll~~le~~~------------~~~~~il~~~~~~-----~l~~~l~s 182 (353)
T 1sxj_D 128 NYP--CPPYKIIILDEADSMTA------DAQSALRRTMETYS------------GVTRFCLICNYVT-----RIIDPLAS 182 (353)
T ss_dssp HSC--CCSCEEEEETTGGGSCH------HHHHHHHHHHHHTT------------TTEEEEEEESCGG-----GSCHHHHH
T ss_pred cCC--CCCceEEEEECCCccCH------HHHHHHHHHHHhcC------------CCceEEEEeCchh-----hCcchhhc
Confidence 112 23457888999997433 34566667776531 2466777887664 58899999
Q ss_pred cccEEEecCCChhHHHHHHHHHHH
Q psy568 558 HVPVIYVDYPGETSLKQIYGTFSR 581 (1614)
Q Consensus 558 ~f~~i~i~~p~~~~l~~I~~~~~~ 581 (1614)
||..+.++.|+.+++..++..++.
T Consensus 183 R~~~i~~~~~~~~~~~~~l~~~~~ 206 (353)
T 1sxj_D 183 QCSKFRFKALDASNAIDRLRFISE 206 (353)
T ss_dssp HSEEEECCCCCHHHHHHHHHHHHH
T ss_pred cCceEEeCCCCHHHHHHHHHHHHH
Confidence 999999999999999998877654
No 71
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.43 E-value=5e-07 Score=103.68 Aligned_cols=140 Identities=19% Similarity=0.277 Sum_probs=86.5
Q ss_pred cCCCEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCCH--HHHHhHhhcccceeecCCccccccccCCceEEEEec
Q psy568 415 EHKPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTP--ELLLKTFDHYCEYRKTPNGVILSPIQLGKWLVLFCD 492 (1614)
Q Consensus 415 ~~~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~~--~~l~~~~~~~~~~~~~~~g~~~~p~~~gk~~vlfiD 492 (1614)
..++++|+||||||||++++.++..+ +..++.++.+...+. ......+.. ++..+......++|+|
T Consensus 43 ~~~GvlL~Gp~GtGKTtLakala~~~-~~~~i~i~g~~l~~~~~~~~~~~i~~-----------vf~~a~~~~p~i~~~D 110 (274)
T 2x8a_A 43 TPAGVLLAGPPGCGKTLLAKAVANES-GLNFISVKGPELLNMYVGESERAVRQ-----------VFQRAKNSAPCVIFFD 110 (274)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHHT-TCEEEEEETTTTCSSTTHHHHHHHHH-----------HHHHHHHTCSEEEEEE
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHc-CCCEEEEEcHHHHhhhhhHHHHHHHH-----------HHHHHHhcCCCeEeee
Confidence 34569999999999999999888876 456777776544321 111111111 1111001234788999
Q ss_pred cCCCCCcccc-----CcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCCCcccccc--ccc-EEEe
Q psy568 493 EINLPDMDKY-----ATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLR--HVP-VIYV 564 (1614)
Q Consensus 493 din~p~~d~~-----g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r--~f~-~i~i 564 (1614)
|++....... ........+-..++.+. . -..+.++|++|.|. .++++++| ||. .|++
T Consensus 111 eid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~---~-------~~~~i~ia~tn~p~-----~LD~al~r~gRfd~~i~~ 175 (274)
T 2x8a_A 111 EVDALCPRRSDRETGASVRVVNQLLTEMDGLE---A-------RQQVFIMAATNRPD-----IIDPAILRPGRLDKTLFV 175 (274)
T ss_dssp TCTTTCC---------CTTHHHHHHHHHHTCC---S-------TTCEEEEEEESCGG-----GSCHHHHSTTSSCEEEEC
T ss_pred hhhhhhcccCCCcchHHHHHHHHHHHhhhccc---c-------cCCEEEEeecCChh-----hCCHhhcCcccCCeEEEe
Confidence 9997533210 01122222222334321 0 12467788998886 68999998 887 7899
Q ss_pred cCCChhHHHHHHHHHHH
Q psy568 565 DYPGETSLKQIYGTFSR 581 (1614)
Q Consensus 565 ~~p~~~~l~~I~~~~~~ 581 (1614)
+.|+.++...|++.++.
T Consensus 176 ~~P~~~~r~~il~~~~~ 192 (274)
T 2x8a_A 176 GLPPPADRLAILKTITK 192 (274)
T ss_dssp CSCCHHHHHHHHHHHTT
T ss_pred CCcCHHHHHHHHHHHHh
Confidence 99999999999887764
No 72
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.37 E-value=1.5e-06 Score=103.12 Aligned_cols=136 Identities=23% Similarity=0.257 Sum_probs=88.8
Q ss_pred CCEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCCHHHHHhHhhcccceeecCCccccccccCCceEEEEeccCCC
Q psy568 417 KPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTPELLLKTFDHYCEYRKTPNGVILSPIQLGKWLVLFCDEINL 496 (1614)
Q Consensus 417 ~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~~~~l~~~~~~~~~~~~~~~g~~~~p~~~gk~~vlfiDdin~ 496 (1614)
.+++|+||||||||++++.++..+ +..+...+.+......++...+.. ..+..|+||||++.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l-~~~~~~~sg~~~~~~~~l~~~~~~-----------------~~~~~v~~iDE~~~ 113 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASEL-QTNIHVTSGPVLVKQGDMAAILTS-----------------LERGDVLFIDEIHR 113 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHH-TCCEEEEETTTCCSHHHHHHHHHH-----------------CCTTCEEEEETGGG
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh-CCCEEEEechHhcCHHHHHHHHHH-----------------ccCCCEEEEcchhh
Confidence 789999999999999999888876 444444444443444444332210 01225788999987
Q ss_pred CCccccCcccHHHHHHHHHHcCcee-----eCCCC-ceEeecCeEEEEeecCCCCCCCCCCccccccccc-EEEecCCCh
Q psy568 497 PDMDKYATQRVISFLRQLIEQRGFY-----RPADK-QWVSLERIQCVGACNPPTDPGRKPLSHRFLRHVP-VIYVDYPGE 569 (1614)
Q Consensus 497 p~~d~~g~q~~lelLrqlld~~~~~-----~~~~~-~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r~f~-~i~i~~p~~ 569 (1614)
... .+.+.|...++..+.. ..... .....+.+.++++++.++ .|++.+.+||. .+.+++++.
T Consensus 114 l~~------~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~-----~Ls~~l~sR~~l~~~Ld~~~~ 182 (334)
T 1in4_A 114 LNK------AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSG-----LLSSPLRSRFGIILELDFYTV 182 (334)
T ss_dssp CCH------HHHHHHHHHHHTSCCCC---------------CCCEEEEEESCGG-----GSCHHHHTTCSEEEECCCCCH
T ss_pred cCH------HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCCcc-----cCCHHHHHhcCceeeCCCCCH
Confidence 432 4567777777654421 00011 112345688888888764 79999999997 578999999
Q ss_pred hHHHHHHHHHHH
Q psy568 570 TSLKQIYGTFSR 581 (1614)
Q Consensus 570 ~~l~~I~~~~~~ 581 (1614)
+++..|+.....
T Consensus 183 ~~l~~iL~~~~~ 194 (334)
T 1in4_A 183 KELKEIIKRAAS 194 (334)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999877654
No 73
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.36 E-value=9.4e-07 Score=109.03 Aligned_cols=141 Identities=23% Similarity=0.259 Sum_probs=86.8
Q ss_pred CCCEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCCH--HHHHhHhhcccceeecCCccccccccCCceEEEEecc
Q psy568 416 HKPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTP--ELLLKTFDHYCEYRKTPNGVILSPIQLGKWLVLFCDE 493 (1614)
Q Consensus 416 ~~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~~--~~l~~~~~~~~~~~~~~~g~~~~p~~~gk~~vlfiDd 493 (1614)
.++++|+||||||||++++.++... +.+++.++++..... ......+. .++.-+......++||||
T Consensus 64 p~GvLL~GppGtGKTtLaraIa~~~-~~~~i~i~g~~~~~~~~g~~~~~v~-----------~lfq~a~~~~p~il~IDE 131 (499)
T 2dhr_A 64 PKGVLLVGPPGVGKTHLARAVAGEA-RVPFITASGSDFVEMFVGVGAARVR-----------DLFETAKRHAPCIVFIDE 131 (499)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHT-TCCEEEEEGGGGTSSCTTHHHHHHH-----------HHTTTSSSSSSCEEEEEC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh-CCCEEEEehhHHHHhhhhhHHHHHH-----------HHHHHHHhcCCCEEEEeh
Confidence 4569999999999999999888876 577888888654321 01111111 011111112347899999
Q ss_pred CCCCCcccc-----CcccHHHHHHHHHHc-CceeeCCCCceEeecCeEEEEeecCCCCCCCCCCcccccc--ccc-EEEe
Q psy568 494 INLPDMDKY-----ATQRVISFLRQLIEQ-RGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLR--HVP-VIYV 564 (1614)
Q Consensus 494 in~p~~d~~-----g~q~~lelLrqlld~-~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r--~f~-~i~i 564 (1614)
|+....... +.......+.+++.. .|+- . -..+.++|++|.|. .++++++| ||. .+.+
T Consensus 132 Id~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~-~-------~~~viviAatn~p~-----~LD~aLlr~gRfdr~i~i 198 (499)
T 2dhr_A 132 IDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE-K-------DTAIVVMAATNRPD-----ILDPALLRPGRFDRQIAI 198 (499)
T ss_dssp GGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCC-S-------SCCCEEEECCSCGG-----GSCTTTSSTTSSCCEEEC
T ss_pred HHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccc-c-------CccEEEEEecCChh-----hcCcccccccccceEEec
Confidence 975432211 112222344444432 1111 1 12577889999875 48999998 565 8899
Q ss_pred cCCChhHHHHHHHHHHH
Q psy568 565 DYPGETSLKQIYGTFSR 581 (1614)
Q Consensus 565 ~~p~~~~l~~I~~~~~~ 581 (1614)
+.|+.++...|+..++.
T Consensus 199 ~~Pd~~~R~~IL~~~~~ 215 (499)
T 2dhr_A 199 DAPDVKGREQILRIHAR 215 (499)
T ss_dssp CCCCHHHHHHHHHHTTS
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 99999999999876543
No 74
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.34 E-value=3.8e-07 Score=105.08 Aligned_cols=136 Identities=15% Similarity=0.181 Sum_probs=79.2
Q ss_pred CCCEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCCH---HHHHhHhhcccceeecCCccccccccCCceEEEEec
Q psy568 416 HKPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTP---ELLLKTFDHYCEYRKTPNGVILSPIQLGKWLVLFCD 492 (1614)
Q Consensus 416 ~~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~~---~~l~~~~~~~~~~~~~~~g~~~~p~~~gk~~vlfiD 492 (1614)
..++||+||||||||++++.+++.. +.+++.++++..... ....+.+...+. ....++..++|||
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ia~~~-~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~-----------~~~~~~~~vl~iD 131 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAKIAEES-NFPFIKICSPDKMIGFSETAKCQAMKKIFD-----------DAYKSQLSCVVVD 131 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHH-TCSEEEEECGGGCTTCCHHHHHHHHHHHHH-----------HHHTSSEEEEEEC
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHh-CCCEEEEeCHHHhcCCchHHHHHHHHHHHH-----------HHHhcCCcEEEEE
Confidence 4679999999999999999998875 677888887643211 111111111111 0112346889999
Q ss_pred cCCCC-Ccccc---CcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCCCcc-ccccccc-EEEecC
Q psy568 493 EINLP-DMDKY---ATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSH-RFLRHVP-VIYVDY 566 (1614)
Q Consensus 493 din~p-~~d~~---g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~-r~~r~f~-~i~i~~ 566 (1614)
|++.. ..... .....++.|..+++.. .+. ..++.+|+|+|.+. .+++ ++.+||. .+.+|.
T Consensus 132 Eid~l~~~~~~~~~~~~~~l~~L~~~~~~~---~~~------~~~~~ii~ttn~~~-----~l~~~~l~~rf~~~i~~p~ 197 (272)
T 1d2n_A 132 DIERLLDYVPIGPRFSNLVLQALLVLLKKA---PPQ------GRKLLIIGTTSRKD-----VLQEMEMLNAFSTTIHVPN 197 (272)
T ss_dssp CHHHHTTCBTTTTBCCHHHHHHHHHHTTCC---CST------TCEEEEEEEESCHH-----HHHHTTCTTTSSEEEECCC
T ss_pred ChhhhhccCCCChhHHHHHHHHHHHHhcCc---cCC------CCCEEEEEecCChh-----hcchhhhhcccceEEcCCC
Confidence 99852 11111 1233455555554421 111 13577899999874 3555 5667775 567766
Q ss_pred CCh-hHHHHHHH
Q psy568 567 PGE-TSLKQIYG 577 (1614)
Q Consensus 567 p~~-~~l~~I~~ 577 (1614)
++. +++..++.
T Consensus 198 l~~r~~i~~i~~ 209 (272)
T 1d2n_A 198 IATGEQLLEALE 209 (272)
T ss_dssp EEEHHHHHHHHH
T ss_pred ccHHHHHHHHHH
Confidence 665 56666543
No 75
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.32 E-value=1.7e-06 Score=105.38 Aligned_cols=149 Identities=17% Similarity=0.087 Sum_probs=96.8
Q ss_pred CEEEecCCCCchHHHHHHHHhcCC---CCceEEEEcccCCCHHHHHhHhhcccceeecCCccc----cc-----cccCCc
Q psy568 418 PLVLCGPPGSGKTMTLLSALRALP---DMEVVSLNFSSATTPELLLKTFDHYCEYRKTPNGVI----LS-----PIQLGK 485 (1614)
Q Consensus 418 ~vLL~Gp~GtGKT~lv~~~~~~l~---~~~~~~i~~s~~t~~~~l~~~~~~~~~~~~~~~g~~----~~-----p~~~gk 485 (1614)
+++|+||+|||||++++.+++.+. +..++.++|+...++..+...+-..+.......|.. .. ....++
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~ 125 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDL 125 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCC
Confidence 799999999999999999988764 346788999888777665554432221110000100 00 001245
Q ss_pred eEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCCCccccccccc--EEE
Q psy568 486 WLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLRHVP--VIY 563 (1614)
Q Consensus 486 ~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r~f~--~i~ 563 (1614)
+.|+||||++.. .+..+..|..+++.. .... ..++.+|+++|.+. -...+.+++.+||. .+.
T Consensus 126 ~~vlilDE~~~l------~~~~~~~L~~~~~~~---~~~~-----~~~~~iI~~~~~~~--~~~~l~~~~~~r~~~~~i~ 189 (389)
T 1fnn_A 126 YMFLVLDDAFNL------APDILSTFIRLGQEA---DKLG-----AFRIALVIVGHNDA--VLNNLDPSTRGIMGKYVIR 189 (389)
T ss_dssp CEEEEEETGGGS------CHHHHHHHHHHTTCH---HHHS-----SCCEEEEEEESSTH--HHHTSCHHHHHHHTTCEEE
T ss_pred eEEEEEECcccc------chHHHHHHHHHHHhC---CCCC-----cCCEEEEEEECCch--HHHHhCHHhhhcCCCceEE
Confidence 689999999984 445666666665431 0000 02578888887652 11247788888887 699
Q ss_pred ecCCChhHHHHHHHHHHHh
Q psy568 564 VDYPGETSLKQIYGTFSRA 582 (1614)
Q Consensus 564 i~~p~~~~l~~I~~~~~~~ 582 (1614)
+++++.+++..++...+..
T Consensus 190 ~~pl~~~~~~~~l~~~~~~ 208 (389)
T 1fnn_A 190 FSPYTKDQIFDILLDRAKA 208 (389)
T ss_dssp CCCCBHHHHHHHHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHh
Confidence 9999999999998877653
No 76
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.30 E-value=3.4e-06 Score=100.51 Aligned_cols=145 Identities=17% Similarity=0.230 Sum_probs=97.3
Q ss_pred HHHHHHHHHhcCCC--EEEecCCCCchHHHHHHHHhcCCCC----ceEEEEcccCCCHHHHHhHhhcccceeecCCcccc
Q psy568 405 HESLLYTWLAEHKP--LVLCGPPGSGKTMTLLSALRALPDM----EVVSLNFSSATTPELLLKTFDHYCEYRKTPNGVIL 478 (1614)
Q Consensus 405 ~~~ll~~~l~~~~~--vLL~Gp~GtGKT~lv~~~~~~l~~~----~~~~i~~s~~t~~~~l~~~~~~~~~~~~~~~g~~~ 478 (1614)
....+...+..|.. ++|+||+|||||++++.+++.+.+. .+..++.+.......+...+...... +.
T Consensus 33 ~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ir~~i~~~~~~-----~~-- 105 (340)
T 1sxj_C 33 VITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDFAST-----RQ-- 105 (340)
T ss_dssp HHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSHHHHHTHHHHHHHB-----CC--
T ss_pred HHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccccHHHHHHHHHHHHhh-----cc--
Confidence 34456667777754 9999999999999999998875332 25567766555555554444321110 11
Q ss_pred ccccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCCCccccccc
Q psy568 479 SPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLRH 558 (1614)
Q Consensus 479 ~p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r~ 558 (1614)
|. .+..-|++|||++.-. ....+.|+.+++... .+..||.++|.+. .+.+.+.+|
T Consensus 106 -~~-~~~~~viiiDe~~~l~------~~~~~~L~~~le~~~------------~~~~~il~~n~~~-----~i~~~i~sR 160 (340)
T 1sxj_C 106 -IF-SKGFKLIILDEADAMT------NAAQNALRRVIERYT------------KNTRFCVLANYAH-----KLTPALLSQ 160 (340)
T ss_dssp -SS-SCSCEEEEETTGGGSC------HHHHHHHHHHHHHTT------------TTEEEEEEESCGG-----GSCHHHHTT
T ss_pred -cC-CCCceEEEEeCCCCCC------HHHHHHHHHHHhcCC------------CCeEEEEEecCcc-----ccchhHHhh
Confidence 11 1224677789999743 234566777777521 2466778888653 688999999
Q ss_pred ccEEEecCCChhHHHHHHHHHHH
Q psy568 559 VPVIYVDYPGETSLKQIYGTFSR 581 (1614)
Q Consensus 559 f~~i~i~~p~~~~l~~I~~~~~~ 581 (1614)
|.++.+..++.+++..++..++.
T Consensus 161 ~~~~~~~~l~~~~~~~~l~~~~~ 183 (340)
T 1sxj_C 161 CTRFRFQPLPQEAIERRIANVLV 183 (340)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHH
T ss_pred ceeEeccCCCHHHHHHHHHHHHH
Confidence 99999999999999888776653
No 77
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.30 E-value=2.2e-06 Score=103.61 Aligned_cols=211 Identities=15% Similarity=0.187 Sum_probs=122.3
Q ss_pred chhhHHHHHHHHHhcCCCEEEecCCCCchHHHHHHHHhcC--CCCceEEEEcccCCCHHHHHhHhhcc----cc-eeecC
Q psy568 401 DTVRHESLLYTWLAEHKPLVLCGPPGSGKTMTLLSALRAL--PDMEVVSLNFSSATTPELLLKTFDHY----CE-YRKTP 473 (1614)
Q Consensus 401 ~t~r~~~ll~~~l~~~~~vLL~Gp~GtGKT~lv~~~~~~l--~~~~~~~i~~s~~t~~~~l~~~~~~~----~~-~~~~~ 473 (1614)
.+.+....+..+...+.||++.|++||||+.+++.+.... .+.+++.+||++... +.+...+-+. +. .....
T Consensus 145 ~m~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~-~~~~~elfg~~~g~~tga~~~~ 223 (387)
T 1ny5_A 145 KMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPR-DIFEAELFGYEKGAFTGAVSSK 223 (387)
T ss_dssp HHHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCH-HHHHHHHHCBCTTSSTTCCSCB
T ss_pred HhhHHHHHHHHhcCCCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCH-HHHHHHhcCCCCCCCCCccccc
Confidence 3455566677777889999999999999999887666543 246799999986433 2222222111 00 00001
Q ss_pred CccccccccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCC--CCCCCC
Q psy568 474 NGVILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTD--PGRKPL 551 (1614)
Q Consensus 474 ~g~~~~p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~--~g~~~l 551 (1614)
.|.+-.+ ...++|+|||+. -+......|.++++.+.+...+ +......++++|+|+|.+-. .....+
T Consensus 224 ~g~~~~a----~~gtlfldei~~------l~~~~q~~Ll~~l~~~~~~~~g-~~~~~~~~~rii~at~~~l~~~~~~g~f 292 (387)
T 1ny5_A 224 EGFFELA----DGGTLFLDEIGE------LSLEAQAKLLRVIESGKFYRLG-GRKEIEVNVRILAATNRNIKELVKEGKF 292 (387)
T ss_dssp CCHHHHT----TTSEEEEESGGG------CCHHHHHHHHHHHHHSEECCBT-CCSBEECCCEEEEEESSCHHHHHHTTSS
T ss_pred CCceeeC----CCcEEEEcChhh------CCHHHHHHHHHHHhcCcEEeCC-CCceeeccEEEEEeCCCCHHHHHHcCCc
Confidence 1322222 125788999997 3444667777888887765433 22333458999999997420 001234
Q ss_pred cccccccccEEEecCCCh----hHHHHHHHHHHHhhhhcc-hhhhhhHHHHHHHHHHHHHHHHhhcCCCCCCccccChhh
Q psy568 552 SHRFLRHVPVIYVDYPGE----TSLKQIYGTFSRAMLRLI-PPLRGYADALTNAMVELYLASQEKFTQDMQPHYVYSPRE 626 (1614)
Q Consensus 552 ~~r~~r~f~~i~i~~p~~----~~l~~I~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~hY~F~lRd 626 (1614)
.+.|..|++++.+..|.- +++..+...++..+.... ..+..+.....+.+.. . +|.-|.|+
T Consensus 293 r~dl~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~l~~--------~------~wpGNvre 358 (387)
T 1ny5_A 293 REDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLS--------Y------PWYGNVRE 358 (387)
T ss_dssp CHHHHHHHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHH--------S------CCTTHHHH
T ss_pred cHHHHHhhcCCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHh--------C------CCCcHHHH
Confidence 566666777666665553 566666666555432211 1111222222222111 1 56779999
Q ss_pred HHHHhhhhhcc
Q psy568 627 MTRWVRGICEA 637 (1614)
Q Consensus 627 l~~v~~~i~~~ 637 (1614)
|.++++..+..
T Consensus 359 L~~~i~~~~~~ 369 (387)
T 1ny5_A 359 LKNVIERAVLF 369 (387)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999987653
No 78
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.28 E-value=1.6e-06 Score=106.58 Aligned_cols=141 Identities=17% Similarity=0.180 Sum_probs=82.5
Q ss_pred CCCEEEecCCCCchHHHHHHHHhcC----CCCceEEEEcccCCCHHHHHhHhhcccceeecCCccccccccCCceEEEEe
Q psy568 416 HKPLVLCGPPGSGKTMTLLSALRAL----PDMEVVSLNFSSATTPELLLKTFDHYCEYRKTPNGVILSPIQLGKWLVLFC 491 (1614)
Q Consensus 416 ~~~vLL~Gp~GtGKT~lv~~~~~~l----~~~~~~~i~~s~~t~~~~l~~~~~~~~~~~~~~~g~~~~p~~~gk~~vlfi 491 (1614)
..|++|+||||||||++++.++..+ ++..++.++++.. ...+.+.+..... ..+.... ..+..|+||
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~--~~~~~~~~~~~~~------~~~~~~~-~~~~~vL~I 200 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKF--LNDLVDSMKEGKL------NEFREKY-RKKVDILLI 200 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHH--HHHHHHHHHTTCH------HHHHHHH-TTTCSEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHH--HHHHHHHHHcccH------HHHHHHh-cCCCCEEEE
Confidence 3699999999999999998888654 3556777776542 2233333321100 0111110 113468889
Q ss_pred ccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCCCcccccccc---cEEEecCCC
Q psy568 492 DEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLRHV---PVIYVDYPG 568 (1614)
Q Consensus 492 Ddin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r~f---~~i~i~~p~ 568 (1614)
||++.-.......+..+.++..+.+.+ ...+++|.+++. .-..+.+++.+|| .++.++.|+
T Consensus 201 DEi~~l~~~~~~q~~l~~~l~~l~~~~--------------~~iIitt~~~~~--~l~~l~~~L~sR~~~g~~i~l~~p~ 264 (440)
T 2z4s_A 201 DDVQFLIGKTGVQTELFHTFNELHDSG--------------KQIVICSDREPQ--KLSEFQDRLVSRFQMGLVAKLEPPD 264 (440)
T ss_dssp ECGGGGSSCHHHHHHHHHHHHHHHTTT--------------CEEEEEESSCGG--GCSSCCHHHHHHHHSSBCCBCCCCC
T ss_pred eCcccccCChHHHHHHHHHHHHHHHCC--------------CeEEEEECCCHH--HHHHHHHHHHhhccCCeEEEeCCCC
Confidence 999874322111122333333333221 123344444443 2234889999999 588999999
Q ss_pred hhHHHHHHHHHHH
Q psy568 569 ETSLKQIYGTFSR 581 (1614)
Q Consensus 569 ~~~l~~I~~~~~~ 581 (1614)
.+++..|+...+.
T Consensus 265 ~e~r~~iL~~~~~ 277 (440)
T 2z4s_A 265 EETRKSIARKMLE 277 (440)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999877664
No 79
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.26 E-value=1.8e-06 Score=104.94 Aligned_cols=151 Identities=18% Similarity=0.200 Sum_probs=95.1
Q ss_pred CCCEEEecCCCCchHHHHHHHHhcCC-----CCceEEEEcccCCCHHHHHhHhhcccceeecCCcc--------ccc-cc
Q psy568 416 HKPLVLCGPPGSGKTMTLLSALRALP-----DMEVVSLNFSSATTPELLLKTFDHYCEYRKTPNGV--------ILS-PI 481 (1614)
Q Consensus 416 ~~~vLL~Gp~GtGKT~lv~~~~~~l~-----~~~~~~i~~s~~t~~~~l~~~~~~~~~~~~~~~g~--------~~~-p~ 481 (1614)
+.+++|+||+|||||++++.+++.+. +..++.++++...++..+...+...+.......|. +.. ..
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~ 124 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVR 124 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHh
Confidence 57899999999999999999887652 55678888877666655554443222110000010 000 01
Q ss_pred cCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCCCcccccccc--
Q psy568 482 QLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLRHV-- 559 (1614)
Q Consensus 482 ~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r~f-- 559 (1614)
..+++.|++|||++..... ..+..+..|..+++.. . ..++.+|++++.+. ....+.+++.++|
T Consensus 125 ~~~~~~vlilDE~~~l~~~--~~~~~l~~l~~~~~~~---~--------~~~~~~I~~~~~~~--~~~~~~~~~~~r~~~ 189 (386)
T 2qby_A 125 DYGSQVVIVLDEIDAFVKK--YNDDILYKLSRINSEV---N--------KSKISFIGITNDVK--FVDLLDPRVKSSLSE 189 (386)
T ss_dssp TCCSCEEEEEETHHHHHHS--SCSTHHHHHHHHHHSC---C--------C--EEEEEEESCGG--GGGGCTTHHHHTTTT
T ss_pred ccCCeEEEEEcChhhhhcc--CcCHHHHHHhhchhhc---C--------CCeEEEEEEECCCC--hHhhhCHHHhccCCC
Confidence 1345789999999863211 1234555555555432 1 12577888887653 2235677888888
Q ss_pred cEEEecCCChhHHHHHHHHHHH
Q psy568 560 PVIYVDYPGETSLKQIYGTFSR 581 (1614)
Q Consensus 560 ~~i~i~~p~~~~l~~I~~~~~~ 581 (1614)
..+.++.++.+++..|+...+.
T Consensus 190 ~~i~l~~l~~~~~~~il~~~~~ 211 (386)
T 2qby_A 190 EEIIFPPYNAEELEDILTKRAQ 211 (386)
T ss_dssp EEEEECCCCHHHHHHHHHHHHH
T ss_pred eeEEeCCCCHHHHHHHHHHHHH
Confidence 5899999999999999887665
No 80
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.25 E-value=3.9e-06 Score=101.49 Aligned_cols=140 Identities=17% Similarity=0.223 Sum_probs=88.2
Q ss_pred HHHHHHhcCC---CEEEecCCCCchHHHHHHHHhcCCCC-----------------------ceEEEEcccCCCHHHHHh
Q psy568 408 LLYTWLAEHK---PLVLCGPPGSGKTMTLLSALRALPDM-----------------------EVVSLNFSSATTPELLLK 461 (1614)
Q Consensus 408 ll~~~l~~~~---~vLL~Gp~GtGKT~lv~~~~~~l~~~-----------------------~~~~i~~s~~t~~~~l~~ 461 (1614)
.+..++..++ .++|+||+|||||++++.+++.+... .++.++.+.......+..
T Consensus 27 ~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (373)
T 1jr3_A 27 ALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRD 106 (373)
T ss_dssp HHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHTSCCSSCEEEETTCSCCSSCHHH
T ss_pred HHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhccCCCceEEecccccCCHHHHHH
Confidence 3444555543 48999999999999999988765321 122333222222222222
Q ss_pred HhhcccceeecCCccccccccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeec
Q psy568 462 TFDHYCEYRKTPNGVILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACN 541 (1614)
Q Consensus 462 ~~~~~~~~~~~~~g~~~~p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n 541 (1614)
.++. + ...|. .|++.|++|||++... ....+.|..+++.. ..++.+|++++
T Consensus 107 l~~~-~---------~~~~~-~~~~~vliiDe~~~l~------~~~~~~Ll~~le~~------------~~~~~~Il~~~ 157 (373)
T 1jr3_A 107 LLDN-V---------QYAPA-RGRFKVYLIDEVHMLS------RHSFNALLKTLEEP------------PEHVKFLLATT 157 (373)
T ss_dssp HHHH-T---------TSCCS-SSSSEEEEEECGGGSC------HHHHHHHHHHHHSC------------CSSEEEEEEES
T ss_pred HHHH-H---------hhccc-cCCeEEEEEECcchhc------HHHHHHHHHHHhcC------------CCceEEEEEeC
Confidence 2211 0 01122 3556888899999843 23455566666641 13577888876
Q ss_pred CCCCCCCCCCcccccccccEEEecCCChhHHHHHHHHHHH
Q psy568 542 PPTDPGRKPLSHRFLRHVPVIYVDYPGETSLKQIYGTFSR 581 (1614)
Q Consensus 542 ~~~~~g~~~l~~r~~r~f~~i~i~~p~~~~l~~I~~~~~~ 581 (1614)
.+. .+.+.+.+|+..+.++.|+.+++..++..++.
T Consensus 158 ~~~-----~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~ 192 (373)
T 1jr3_A 158 DPQ-----KLPVTILSRCLQFHLKALDVEQIRHQLEHILN 192 (373)
T ss_dssp CGG-----GSCHHHHTTSEEEECCCCCHHHHHHHHHHHHH
T ss_pred ChH-----hCcHHHHhheeEeeCCCCCHHHHHHHHHHHHH
Confidence 543 57888999999999999999999998877654
No 81
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.21 E-value=9.3e-06 Score=96.26 Aligned_cols=138 Identities=14% Similarity=0.101 Sum_probs=89.7
Q ss_pred HHHHHHhcCC---CEEEecCCCCchHHHHHHHHhcCCC-----------------------CceEEEEcc---cCCCHHH
Q psy568 408 LLYTWLAEHK---PLVLCGPPGSGKTMTLLSALRALPD-----------------------MEVVSLNFS---SATTPEL 458 (1614)
Q Consensus 408 ll~~~l~~~~---~vLL~Gp~GtGKT~lv~~~~~~l~~-----------------------~~~~~i~~s---~~t~~~~ 458 (1614)
.+...+..|+ .+||+||+|+|||++++.+++.+.. ..+..++-. ...+.+.
T Consensus 13 ~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~~~i~~ 92 (334)
T 1a5t_A 13 KLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGKNTLGVDA 92 (334)
T ss_dssp HHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTTCSSBCHHH
T ss_pred HHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccccCCCCCHHH
Confidence 3444555553 3899999999999999999876532 123334332 2344555
Q ss_pred HHhHhhcccceeecCCccccccccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEE
Q psy568 459 LLKTFDHYCEYRKTPNGVILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVG 538 (1614)
Q Consensus 459 l~~~~~~~~~~~~~~~g~~~~p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~ia 538 (1614)
+...++. +. ..|. .|++-|++|||++.-.. .....|...++.. .+++.||.
T Consensus 93 ir~l~~~-~~---------~~~~-~~~~kvviIdead~l~~------~a~naLLk~lEep------------~~~~~~Il 143 (334)
T 1a5t_A 93 VREVTEK-LN---------EHAR-LGGAKVVWVTDAALLTD------AAANALLKTLEEP------------PAETWFFL 143 (334)
T ss_dssp HHHHHHH-TT---------SCCT-TSSCEEEEESCGGGBCH------HHHHHHHHHHTSC------------CTTEEEEE
T ss_pred HHHHHHH-Hh---------hccc-cCCcEEEEECchhhcCH------HHHHHHHHHhcCC------------CCCeEEEE
Confidence 5444321 11 1232 35567888999998433 3444455566531 13577788
Q ss_pred eecCCCCCCCCCCcccccccccEEEecCCChhHHHHHHHHH
Q psy568 539 ACNPPTDPGRKPLSHRFLRHVPVIYVDYPGETSLKQIYGTF 579 (1614)
Q Consensus 539 a~n~~~~~g~~~l~~r~~r~f~~i~i~~p~~~~l~~I~~~~ 579 (1614)
+++.+. .+.+.+.+|+.++.++.|+.+++..+....
T Consensus 144 ~t~~~~-----~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~ 179 (334)
T 1a5t_A 144 ATREPE-----RLLATLRSRCRLHYLAPPPEQYAVTWLSRE 179 (334)
T ss_dssp EESCGG-----GSCHHHHTTSEEEECCCCCHHHHHHHHHHH
T ss_pred EeCChH-----hCcHHHhhcceeeeCCCCCHHHHHHHHHHh
Confidence 877543 689999999999999999999988886554
No 82
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.20 E-value=5.4e-06 Score=106.38 Aligned_cols=152 Identities=13% Similarity=0.076 Sum_probs=78.6
Q ss_pred EEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCC---------ceEeecCeEEEEeecCCCCCCCCCCcccccc
Q psy568 487 LVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADK---------QWVSLERIQCVGACNPPTDPGRKPLSHRFLR 557 (1614)
Q Consensus 487 ~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~---------~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r 557 (1614)
.++||||++.. +..+.+.|..+++.+.+...... ......++++|+|+|+.. ...+++.|.+
T Consensus 203 gvL~LDEi~~l------~~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~vI~atn~~~---~~~l~~~l~~ 273 (604)
T 3k1j_A 203 GVLFIDEIATL------SLKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLVAAGNLDT---VDKMHPALRS 273 (604)
T ss_dssp SEEEETTGGGS------CHHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEEEEEECHHH---HHHSCHHHHH
T ss_pred CEEEEechhhC------CHHHHHHHHHHHHcCcEEecccccccccccCCCCccceeEEEEEecCHHH---HhhcCHHHHH
Confidence 47888999984 34467788888888776543211 112235899999999852 1368999999
Q ss_pred cccE--EEecCC-----ChhHHHHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHHHhhcCCCCCCccccChhhHHHH
Q psy568 558 HVPV--IYVDYP-----GETSLKQIYGTFSRAMLRLIPPLRGYADALTNAMVELYLASQEKFTQDMQPHYVYSPREMTRW 630 (1614)
Q Consensus 558 ~f~~--i~i~~p-----~~~~l~~I~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~hY~F~lRdl~~v 630 (1614)
||.+ +.++.+ +.+.+..+...+....... .....+.......++..+.. . +..+.....++|++.++
T Consensus 274 R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~ls~eAl~~Li~~~~r----~-~g~r~~l~~~~R~l~~l 347 (604)
T 3k1j_A 274 RIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRD-GKIPHFTKEAVEEIVREAQK----R-AGRKGHLTLRLRDLGGI 347 (604)
T ss_dssp HHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHH-CSSCCBBHHHHHHHHHHHHH----T-TCSTTEEECCHHHHHHH
T ss_pred HhhccceEeeccccccCCHHHHHHHHHHHHHHHhhc-cCcccCCHHHHHHHHHHHhh----h-hccccccccCHHHHHHH
Confidence 9963 333332 2223444433222211100 00112223333333333321 1 12223445588999888
Q ss_pred hhhhhccc--CCCccCCHHHHHHHH
Q psy568 631 VRGICEAI--RPLESLTVEGLVRLW 653 (1614)
Q Consensus 631 ~~~i~~~~--~~~~~~~~~~l~~lw 653 (1614)
++...... ......+.+.+.+.+
T Consensus 348 lr~A~~~A~~~~~~~I~~edv~~A~ 372 (604)
T 3k1j_A 348 VRAAGDIAVKKGKKYVEREDVIEAV 372 (604)
T ss_dssp HHHHHHHHHHTTCSSBCHHHHHHHH
T ss_pred HHHHHHHHHhcCcccccHHHHHHHH
Confidence 87543211 122234555554443
No 83
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.19 E-value=7.8e-07 Score=105.91 Aligned_cols=146 Identities=18% Similarity=0.086 Sum_probs=87.0
Q ss_pred HHHHHHhcCC-------CEEEecCCCCchHHHHHHH-HhcCCCCceEEEEcccCCCHHHHHhHhhcccceeecCCccccc
Q psy568 408 LLYTWLAEHK-------PLVLCGPPGSGKTMTLLSA-LRALPDMEVVSLNFSSATTPELLLKTFDHYCEYRKTPNGVILS 479 (1614)
Q Consensus 408 ll~~~l~~~~-------~vLL~Gp~GtGKT~lv~~~-~~~l~~~~~~~i~~s~~t~~~~l~~~~~~~~~~~~~~~g~~~~ 479 (1614)
.+..++..|. ||||+|+||+ ||++++.+ .+.++. .+..... ..++..+.+.+..... .....|.+.-
T Consensus 224 aLll~L~GG~~k~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR--~~ft~g~-~ss~~gLt~s~r~~tG-~~~~~G~l~L 298 (506)
T 3f8t_A 224 MLALQLFSCVGKNSERLHVLLAGYPVV-CSEILHHVLDHLAPR--GVYVDLR-RTELTDLTAVLKEDRG-WALRAGAAVL 298 (506)
T ss_dssp HHHHHHTTCCSSGGGCCCEEEESCHHH-HHHHHHHHHHHTCSS--EEEEEGG-GCCHHHHSEEEEESSS-EEEEECHHHH
T ss_pred HHHHHHcCCccccCCceeEEEECCCCh-HHHHHHHHHHHhCCC--eEEecCC-CCCccCceEEEEcCCC-cccCCCeeEE
Confidence 3445556666 9999999999 99999988 555432 2222111 1222223222100000 0111233332
Q ss_pred cccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCC------CCCCcc
Q psy568 480 PIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPG------RKPLSH 553 (1614)
Q Consensus 480 p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g------~~~l~~ 553 (1614)
+ ...++|+||||. .+....+.|++.|+.+.+... +. ....++.+|||+||.+..+ ...||+
T Consensus 299 A----dgGvl~lDEIn~------~~~~~qsaLlEaMEe~~VtI~--G~-~lparf~VIAA~NP~~~yd~~~s~~~~~Lp~ 365 (506)
T 3f8t_A 299 A----DGGILAVDHLEG------APEPHRWALMEAMDKGTVTVD--GI-ALNARCAVLAAINPGEQWPSDPPIARIDLDQ 365 (506)
T ss_dssp T----TTSEEEEECCTT------CCHHHHHHHHHHHHHSEEEET--TE-EEECCCEEEEEECCCC--CCSCGGGGCCSCH
T ss_pred c----CCCeeehHhhhh------CCHHHHHHHHHHHhCCcEEEC--CE-EcCCCeEEEEEeCcccccCCCCCccccCCCh
Confidence 2 236788899999 555688899999999988765 44 5556899999999975111 238999
Q ss_pred cccccccEEE--ecCCChhH
Q psy568 554 RFLRHVPVIY--VDYPGETS 571 (1614)
Q Consensus 554 r~~r~f~~i~--i~~p~~~~ 571 (1614)
.++.||-++. +++|+.+.
T Consensus 366 alLDRFDLi~i~~d~pd~e~ 385 (506)
T 3f8t_A 366 DFLSHFDLIAFLGVDPRPGE 385 (506)
T ss_dssp HHHTTCSEEEETTC------
T ss_pred HHhhheeeEEEecCCCChhH
Confidence 9999996544 46666543
No 84
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.19 E-value=1.2e-06 Score=99.67 Aligned_cols=139 Identities=22% Similarity=0.236 Sum_probs=80.3
Q ss_pred CCCEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCC--HHHHHhHhhcccceeecCCccccccccCCceEEEEecc
Q psy568 416 HKPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATT--PELLLKTFDHYCEYRKTPNGVILSPIQLGKWLVLFCDE 493 (1614)
Q Consensus 416 ~~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~--~~~l~~~~~~~~~~~~~~~g~~~~p~~~gk~~vlfiDd 493 (1614)
.++++|+||||||||++++.++..+ +..++.++.+.... .......+. .++.-.......++|+||
T Consensus 49 ~~g~ll~G~~G~GKTtl~~~i~~~~-~~~~i~~~~~~~~~~~~~~~~~~i~-----------~~~~~~~~~~~~i~~~De 116 (254)
T 1ixz_A 49 PKGVLLVGPPGVGKTHLARAVAGEA-RVPFITASGSDFVEMFVGVGAARVR-----------DLFETAKRHAPCIVFIDE 116 (254)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHT-TCCEEEEEHHHHHHSCTTHHHHHHH-----------HHHHHHTTSSSEEEEEET
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh-CCCEEEeeHHHHHHHHhhHHHHHHH-----------HHHHHHHhcCCeEEEehh
Confidence 4569999999999999999988877 45666666532110 000001110 111111112347888999
Q ss_pred CCCCCcccc-----CcccHHHHHHHHH---HcCceeeCCCCceEeecCeEEEEeecCCCCCCCCCCcccccc--ccc-EE
Q psy568 494 INLPDMDKY-----ATQRVISFLRQLI---EQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLR--HVP-VI 562 (1614)
Q Consensus 494 in~p~~d~~-----g~q~~lelLrqll---d~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r--~f~-~i 562 (1614)
++....... +.....+.+.+++ +.+. . -..+.++|++|.|. .+++++.| ||. .+
T Consensus 117 id~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~-----~-----~~~~i~~a~t~~p~-----~ld~~l~r~~rf~~~i 181 (254)
T 1ixz_A 117 IDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE-----K-----DTAIVVMAATNRPD-----ILDPALLRPGRFDRQI 181 (254)
T ss_dssp HHHHHC---------CHHHHHHHHHHHHHHHTCC-----T-----TCCEEEEEEESCGG-----GSCGGGGSTTSSCEEE
T ss_pred hhhhhcccCccccccchHHHHHHHHHHHHHhCCC-----C-----CCCEEEEEccCCch-----hCCHHHcCCCcCCeEE
Confidence 964221110 1111122223332 3211 0 12466788888875 58999998 665 78
Q ss_pred EecCCChhHHHHHHHHHHH
Q psy568 563 YVDYPGETSLKQIYGTFSR 581 (1614)
Q Consensus 563 ~i~~p~~~~l~~I~~~~~~ 581 (1614)
.++.|+.++...|+..+..
T Consensus 182 ~i~~p~~~~r~~il~~~~~ 200 (254)
T 1ixz_A 182 AIDAPDVKGREQILRIHAR 200 (254)
T ss_dssp ECCSCCHHHHHHHHHHHHT
T ss_pred eeCCcCHHHHHHHHHHHHc
Confidence 9999999999999876654
No 85
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.15 E-value=1.4e-05 Score=98.98 Aligned_cols=149 Identities=19% Similarity=0.260 Sum_probs=92.1
Q ss_pred hhhHHHHHHHHHHHHHHhccCCccEEEeecCCCChHHHHHHHHHHc----------CCeEEEEEecCCCChhcHHHHHHH
Q psy568 736 LVLFDEVLDHVLRIDRIFRQPQGHLLLIGVSGAGKTTLSRFVAFMN----------GLSVFQIRAHNKYTGADFDEDLRT 805 (1614)
Q Consensus 736 lvlf~~~i~hi~ri~Ril~~p~gh~LLvG~~GsGKtsl~rlaA~~~----------~~~~~~i~~~~~~~~~df~~~lk~ 805 (1614)
++--++.+..+..+.. +...+|+||+|++|+|||++++.+|... +.+++.+++...| ..+|.+.++.
T Consensus 182 iiGr~~~i~~l~~~l~--r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~-~g~~e~~~~~ 258 (468)
T 3pxg_A 182 VIGRSKEIQRVIEVLS--RRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKY-RGEFEDRLKK 258 (468)
T ss_dssp CCCCHHHHHHHHHHHH--CSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----------CTTHHH
T ss_pred ccCcHHHHHHHHHHHh--ccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCCccc-cchHHHHHHH
Confidence 4444555554444322 2456789999999999999999988774 7888888776222 3445556777
Q ss_pred HHHHhccCCCcEEEEEcCCcccccchHHHHHHhhccCCCCCCCChhhHHHHHHHhHHHHHHcCCCCCCHHHHHHHHHHHH
Q psy568 806 VLRRSGCKNEKIAFLLDESNVLESGFLERMNTLLANGEIPGLFEGDEYTTLMTQCKEGAQREGLMLDSNEELYKWFTQQV 885 (1614)
Q Consensus 806 ~l~~ag~~~~~~v~ll~d~~i~~~~~le~in~lL~~G~v~~Lf~~eE~~~i~~~~~~~~~~~~~~~~s~~~l~~~f~~rv 885 (1614)
++..+.. ..+.++++|. -.+..|.|+ +-| .
T Consensus 259 ~~~~~~~-~~~~iLfiD~-------~~~a~~~L~-----~~L------------------------~------------- 288 (468)
T 3pxg_A 259 VMDEIRQ-AGNIILFIDA-------AIDASNILK-----PSL------------------------A------------- 288 (468)
T ss_dssp HHHHHHT-CCCCEEEECC---------------C-----CCT------------------------T-------------
T ss_pred HHHHHHh-cCCeEEEEeC-------chhHHHHHH-----Hhh------------------------c-------------
Confidence 7766643 3566777760 001111111 000 0
Q ss_pred hhcceEEEEECCCChhhHHHhhhCccccccceecccCCCcHHHHHHHHHHhhcc
Q psy568 886 MKNLHVVFTMNPSSEGLKDRAATSPALFNRCVLNWFGDWSDTALYQVAKEFTSK 939 (1614)
Q Consensus 886 ~~nlhivl~~sp~~~~~r~~~~~~PaL~~~~~i~wf~~W~~eaL~~va~~~l~~ 939 (1614)
+.++.++.+.++. .++..+..-|+|.++|.+..|.+.+.+....+...++..
T Consensus 289 ~g~v~vI~at~~~--e~~~~~~~~~al~~Rf~~i~v~~p~~e~~~~iL~~~~~~ 340 (468)
T 3pxg_A 289 RGELQCIGATTLD--EYRKYIEKDAALERRFQPIQVDQPSVDESIQILQGLRDR 340 (468)
T ss_dssp SSSCEEEEECCTT--TTHHHHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTTTT
T ss_pred CCCEEEEecCCHH--HHHHHhhcCHHHHHhCccceeCCCCHHHHHHHHHHHHHH
Confidence 2257777777764 355566778999999999999999999999998887654
No 86
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.14 E-value=1e-05 Score=95.00 Aligned_cols=147 Identities=18% Similarity=0.225 Sum_probs=90.2
Q ss_pred ccCCccEEEeecCCCChHHHHHHHHHHcC-------CeEEEEEecCCCC--hhcHHHHHHHHHHHhccCCCcEEEEEcCC
Q psy568 754 RQPQGHLLLIGVSGAGKTTLSRFVAFMNG-------LSVFQIRAHNKYT--GADFDEDLRTVLRRSGCKNEKIAFLLDES 824 (1614)
Q Consensus 754 ~~p~gh~LLvG~~GsGKtsl~rlaA~~~~-------~~~~~i~~~~~~~--~~df~~~lk~~l~~ag~~~~~~v~ll~d~ 824 (1614)
..+.+|+||+|++|+|||++++.+|..++ .+++.++...-.+ .......++.++..+ .+.++++||.
T Consensus 64 ~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~----~~~vl~iDEi 139 (309)
T 3syl_A 64 ETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRA----MGGVLFIDEA 139 (309)
T ss_dssp SCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTCCSSTTCHHHHHHHHHHHH----TTSEEEEETG
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhhhhcccccHHHHHHHHHhc----CCCEEEEECh
Confidence 35566899999999999999998887653 3777776544322 122234456666655 2457888876
Q ss_pred cccccchHHHHHHhhccCCCCCCCChhhHHHHHHHhHHHHHHcCCCCCCHHHHHHHHHHHHhhcceEEEEECCCChhhHH
Q psy568 825 NVLESGFLERMNTLLANGEIPGLFEGDEYTTLMTQCKEGAQREGLMLDSNEELYKWFTQQVMKNLHVVFTMNPSSEGLKD 904 (1614)
Q Consensus 825 ~i~~~~~le~in~lL~~G~v~~Lf~~eE~~~i~~~~~~~~~~~~~~~~s~~~l~~~f~~rv~~nlhivl~~sp~~~~~r~ 904 (1614)
+.. ...+ -.+-++.+-...++..+ +.-+.++.++++-++. ....
T Consensus 140 d~l-----------~~~~-~~~~~~~~~~~~Ll~~l----------------------~~~~~~~~~i~~~~~~--~~~~ 183 (309)
T 3syl_A 140 YYL-----------YRPD-NERDYGQEAIEILLQVM----------------------ENNRDDLVVILAGYAD--RMEN 183 (309)
T ss_dssp GGS-----------CCCC----CCTHHHHHHHHHHH----------------------HHCTTTCEEEEEECHH--HHHH
T ss_pred hhh-----------ccCC-CcccccHHHHHHHHHHH----------------------hcCCCCEEEEEeCChH--HHHH
Confidence 432 1110 00112222222222211 1123467777776653 2223
Q ss_pred HhhhCccccccc-eecccCCCcHHHHHHHHHHhhccc
Q psy568 905 RAATSPALFNRC-VLNWFGDWSDTALYQVAKEFTSKI 940 (1614)
Q Consensus 905 ~~~~~PaL~~~~-~i~wf~~W~~eaL~~va~~~l~~~ 940 (1614)
..+..|+|.++| .+..|.+++.+.+..+..+++...
T Consensus 184 ~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~ 220 (309)
T 3syl_A 184 FFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQ 220 (309)
T ss_dssp HHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHHT
T ss_pred HHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHHc
Confidence 345579999999 788899999999999999998754
No 87
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=98.14 E-value=9.9e-08 Score=125.94 Aligned_cols=139 Identities=23% Similarity=0.344 Sum_probs=89.6
Q ss_pred hcCCCEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCCH------HHHHhHhhcccceeecCCccccccccCCceE
Q psy568 414 AEHKPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTP------ELLLKTFDHYCEYRKTPNGVILSPIQLGKWL 487 (1614)
Q Consensus 414 ~~~~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~~------~~l~~~~~~~~~~~~~~~g~~~~p~~~gk~~ 487 (1614)
..+.++||+||||||||++++.++..+ +.+++.++++...+. ..+...+. .+ .....+
T Consensus 509 ~~~~~vLL~GppGtGKT~Lakala~~~-~~~~i~v~~~~l~~~~~g~~~~~i~~~f~--------------~a-~~~~p~ 572 (806)
T 1ypw_A 509 TPSKGVLFYGPPGCGKTLLAKAIANEC-QANFISIKGPELLTMWFGESEANVREIFD--------------KA-RQAAPC 572 (806)
T ss_dssp CCCCCCCCBCCTTSSHHHHHHHHHHHH-TCCCCCCCCSSSTTCCTTTSSHHHHHHHH--------------HH-HHHCSB
T ss_pred CCCceeEEECCCCCCHHHHHHHHHHHh-CCCEEEEechHhhhhhcCccHHHHHHHHH--------------HH-HhcCCe
Confidence 357889999999999999999998876 566676766543321 12222121 11 111236
Q ss_pred EEEeccCCCCCccccCc-----ccHHHHHHHHHHcC-ceeeCCCCceEeecCeEEEEeecCCCCCCCCCCcccccc--cc
Q psy568 488 VLFCDEINLPDMDKYAT-----QRVISFLRQLIEQR-GFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLR--HV 559 (1614)
Q Consensus 488 vlfiDdin~p~~d~~g~-----q~~lelLrqlld~~-~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r--~f 559 (1614)
|+|+||++......-+. ...-.++.+++..- ++. ...++.+|+|+|.+. .++++++| ||
T Consensus 573 vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~--------~~~~v~vI~tTN~~~-----~ld~allrpgRf 639 (806)
T 1ypw_A 573 VLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS--------TKKNVFIIGATNRPD-----IIDPAILRPGRL 639 (806)
T ss_dssp CCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC--------------CCBCCCCCBSCG-----GGSCTTSSGGGT
T ss_pred EEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhccc--------ccCCeEEEEecCCcc-----cCCHHHhCcccc
Confidence 89999999643322111 12334455555431 111 124688999999886 69999999 99
Q ss_pred c-EEEecCCChhHHHHHHHHHHH
Q psy568 560 P-VIYVDYPGETSLKQIYGTFSR 581 (1614)
Q Consensus 560 ~-~i~i~~p~~~~l~~I~~~~~~ 581 (1614)
. .|+++.|+.++...|++.++.
T Consensus 640 ~~~i~~~~p~~~~r~~Il~~~l~ 662 (806)
T 1ypw_A 640 DQLIYIPLPDEKSRVAILKANLR 662 (806)
T ss_dssp TSCCCCCCCCCSHHHHHTTTTTS
T ss_pred CceeecCCCCHHHHHHHHHHHhc
Confidence 7 899999999999999765543
No 88
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.12 E-value=2.2e-06 Score=98.95 Aligned_cols=141 Identities=23% Similarity=0.260 Sum_probs=81.6
Q ss_pred CCCEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCC--HHHHHhHhhcccceeecCCccccccccCCceEEEEecc
Q psy568 416 HKPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATT--PELLLKTFDHYCEYRKTPNGVILSPIQLGKWLVLFCDE 493 (1614)
Q Consensus 416 ~~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~--~~~l~~~~~~~~~~~~~~~g~~~~p~~~gk~~vlfiDd 493 (1614)
..+++|+||+|||||++++.++..+ +..++.++++.... .......+. .++.-.......++|+||
T Consensus 73 ~~gvll~Gp~GtGKTtl~~~i~~~~-~~~~i~~~~~~~~~~~~~~~~~~i~-----------~~~~~~~~~~~~i~~iDe 140 (278)
T 1iy2_A 73 PKGVLLVGPPGVGKTHLARAVAGEA-RVPFITASGSDFVEMFVGVGAARVR-----------DLFETAKRHAPCIVFIDE 140 (278)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHT-TCCEEEEEHHHHHHSTTTHHHHHHH-----------HHHHHHHTSCSEEEEEET
T ss_pred CCeEEEECCCcChHHHHHHHHHHHc-CCCEEEecHHHHHHHHhhHHHHHHH-----------HHHHHHHhcCCcEEehhh
Confidence 4569999999999999999988877 45666666542110 000001110 011100112236888999
Q ss_pred CCCCCcccc-----CcccHHHHHHHHHHc-CceeeCCCCceEeecCeEEEEeecCCCCCCCCCCcccccc--ccc-EEEe
Q psy568 494 INLPDMDKY-----ATQRVISFLRQLIEQ-RGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLR--HVP-VIYV 564 (1614)
Q Consensus 494 in~p~~d~~-----g~q~~lelLrqlld~-~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r--~f~-~i~i 564 (1614)
++....... +.....+.+.+++.. .|.- . -..+.++|++|.|. .+++++.| ||. .+.+
T Consensus 141 id~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~-~-------~~~~i~~a~t~~p~-----~ld~~l~r~~rf~~~i~i 207 (278)
T 1iy2_A 141 IDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE-K-------DTAIVVMAATNRPD-----ILDPALLRPGRFDRQIAI 207 (278)
T ss_dssp HHHHHCC--------CHHHHHHHHHHHHHHTTCC-T-------TCCEEEEEEESCTT-----SSCHHHHSTTSSCCEEEC
T ss_pred hHhhhcccccccCCcchHHHHHHHHHHHHHhCCC-C-------CCCEEEEEecCCch-----hCCHhHcCCCcCCeEEEe
Confidence 974221110 011223334444332 1100 0 12467788888875 58999987 665 7899
Q ss_pred cCCChhHHHHHHHHHHH
Q psy568 565 DYPGETSLKQIYGTFSR 581 (1614)
Q Consensus 565 ~~p~~~~l~~I~~~~~~ 581 (1614)
+.|+.++...|+..+..
T Consensus 208 ~~p~~~~r~~il~~~~~ 224 (278)
T 1iy2_A 208 DAPDVKGREQILRIHAR 224 (278)
T ss_dssp CCCCHHHHHHHHHHHHT
T ss_pred CCcCHHHHHHHHHHHHc
Confidence 99999999999876554
No 89
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.12 E-value=1.2e-05 Score=93.51 Aligned_cols=137 Identities=12% Similarity=0.022 Sum_probs=93.5
Q ss_pred HHHHHHhcCC--CEEEecCCCCchHHHHHHHHhcC-----CCCceEEEEccc-CCCHHHHHhHhhcccceeecCCccccc
Q psy568 408 LLYTWLAEHK--PLVLCGPPGSGKTMTLLSALRAL-----PDMEVVSLNFSS-ATTPELLLKTFDHYCEYRKTPNGVILS 479 (1614)
Q Consensus 408 ll~~~l~~~~--~vLL~Gp~GtGKT~lv~~~~~~l-----~~~~~~~i~~s~-~t~~~~l~~~~~~~~~~~~~~~g~~~~ 479 (1614)
.+...+..|+ +.||+||+|+|||+++..+++.. ....+..++.+. .++.+.+...++. +. ..
T Consensus 8 ~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~ir~li~~-~~---------~~ 77 (305)
T 2gno_A 8 TLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRTIKDF-LN---------YS 77 (305)
T ss_dssp HHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHHHHHHHH-HT---------SC
T ss_pred HHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHHHHHHHH-Hh---------hc
Confidence 4555666665 58999999999999998887642 133566676653 4666666554432 11 12
Q ss_pred cccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCCCcccccccc
Q psy568 480 PIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLRHV 559 (1614)
Q Consensus 480 p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r~f 559 (1614)
|. .|++-|++|||++.- +......|+..++... +++.||.+++.+ +.+.+.+.+|
T Consensus 78 p~-~~~~kvviIdead~l------t~~a~naLLk~LEep~------------~~t~fIl~t~~~-----~kl~~tI~SR- 132 (305)
T 2gno_A 78 PE-LYTRKYVIVHDCERM------TQQAANAFLKALEEPP------------EYAVIVLNTRRW-----HYLLPTIKSR- 132 (305)
T ss_dssp CS-SSSSEEEEETTGGGB------CHHHHHHTHHHHHSCC------------TTEEEEEEESCG-----GGSCHHHHTT-
T ss_pred cc-cCCceEEEeccHHHh------CHHHHHHHHHHHhCCC------------CCeEEEEEECCh-----HhChHHHHce-
Confidence 32 345677888999984 3334566777777521 357777777654 3688899999
Q ss_pred cEEEecCCChhHHHHHHHHHH
Q psy568 560 PVIYVDYPGETSLKQIYGTFS 580 (1614)
Q Consensus 560 ~~i~i~~p~~~~l~~I~~~~~ 580 (1614)
++.+..|+.+++.......+
T Consensus 133 -~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 133 -VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp -SEEEECCCCHHHHHHHHHHH
T ss_pred -eEeCCCCCHHHHHHHHHHHh
Confidence 89999999999998876654
No 90
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.11 E-value=6.3e-06 Score=98.70 Aligned_cols=213 Identities=15% Similarity=0.139 Sum_probs=121.6
Q ss_pred cchhhHHHHHHHHHhcCCCEEEecCCCCchHHHHHHHHhcCC-CCceEEEEcccCCCH---HHHHhHhhcccc-eeecCC
Q psy568 400 LDTVRHESLLYTWLAEHKPLVLCGPPGSGKTMTLLSALRALP-DMEVVSLNFSSATTP---ELLLKTFDHYCE-YRKTPN 474 (1614)
Q Consensus 400 ~~t~r~~~ll~~~l~~~~~vLL~Gp~GtGKT~lv~~~~~~l~-~~~~~~i~~s~~t~~---~~l~~~~~~~~~-~~~~~~ 474 (1614)
+...+....+........+|++.|++||||+.+++.+..... ...++.+||++.... +.+.|.-.+.+. ......
T Consensus 136 ~~~~~~~~~~~~~a~~~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~lfg~~~g~~tga~~~~~ 215 (368)
T 3dzd_A 136 PKILEIKRLIPKIAKSKAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESELFGHEKGAFTGALTRKK 215 (368)
T ss_dssp HHHHHHHHHHHHHHTSCSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHHHHEECSCSSSSCCCCEE
T ss_pred hHHHHHHhhhhhhhccchhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHHhcCccccccCCcccccC
Confidence 344455666777778899999999999999998766654321 223889999866442 122221111110 000011
Q ss_pred ccccccccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCC--CCCCCc
Q psy568 475 GVILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDP--GRKPLS 552 (1614)
Q Consensus 475 g~~~~p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~--g~~~l~ 552 (1614)
|.+-.+ .| ..+|+|||+. -+......|.++++.|.+...+.. .....++++|+|+|..-.. ....+.
T Consensus 216 g~~~~a--~~--gtlfldei~~------l~~~~Q~~Ll~~l~~~~~~~~g~~-~~~~~~~rii~at~~~l~~~v~~g~fr 284 (368)
T 3dzd_A 216 GKLELA--DQ--GTLFLDEVGE------LDQRVQAKLLRVLETGSFTRLGGN-QKIEVDIRVISATNKNLEEEIKKGNFR 284 (368)
T ss_dssp CHHHHT--TT--SEEEEETGGG------SCHHHHHHHHHHHHHSEECCBTCC-CBEECCCEEEEEESSCHHHHHHTTSSC
T ss_pred ChHhhc--CC--CeEEecChhh------CCHHHHHHHHHHHHhCCcccCCCC-cceeeeeEEEEecCCCHHHHHHcCCcc
Confidence 333222 12 4688999998 344466777788888876653332 2334589999999865200 112345
Q ss_pred ccccccccEEE--ecCCCh--hHHHHHHHHHHHhhhhcch-hhhhhHHHHHHHHHHHHHHHHhhcCCCCCCccccChhhH
Q psy568 553 HRFLRHVPVIY--VDYPGE--TSLKQIYGTFSRAMLRLIP-PLRGYADALTNAMVELYLASQEKFTQDMQPHYVYSPREM 627 (1614)
Q Consensus 553 ~r~~r~f~~i~--i~~p~~--~~l~~I~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~hY~F~lRdl 627 (1614)
+.|..|++++. +|+..+ +++..+...++..+..... ....+.......+. . -+|.-|.|+|
T Consensus 285 ~dL~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~--------~------~~wpGNvreL 350 (368)
T 3dzd_A 285 EDLYYRLSVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYLM--------K------QEWKGNVREL 350 (368)
T ss_dssp HHHHHHHTSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHH--------T------CCCTTHHHHH
T ss_pred HHHHHHhCCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHH--------h------CCCCcHHHHH
Confidence 56777777655 454444 5677776666554422111 11112222111111 1 1566799999
Q ss_pred HHHhhhhhcc
Q psy568 628 TRWVRGICEA 637 (1614)
Q Consensus 628 ~~v~~~i~~~ 637 (1614)
.++++.++..
T Consensus 351 ~n~i~~~~~~ 360 (368)
T 3dzd_A 351 KNLIERAVIL 360 (368)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999987653
No 91
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.03 E-value=2e-05 Score=84.86 Aligned_cols=136 Identities=19% Similarity=0.201 Sum_probs=82.6
Q ss_pred CCccEEEeecCCCChHHHHHHHHHHc----------CCeEEEEEecCCC----ChhcHHHHHHHHHHHhccCCCcEEEEE
Q psy568 756 PQGHLLLIGVSGAGKTTLSRFVAFMN----------GLSVFQIRAHNKY----TGADFDEDLRTVLRRSGCKNEKIAFLL 821 (1614)
Q Consensus 756 p~gh~LLvG~~GsGKtsl~rlaA~~~----------~~~~~~i~~~~~~----~~~df~~~lk~~l~~ag~~~~~~v~ll 821 (1614)
..++++|+|++|+|||++++.++... +..++.+++.... ...++...++.++......+.+.++++
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~i 121 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFI 121 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEE
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEE
Confidence 35679999999999999999888764 7888887754322 133445556666665545667889999
Q ss_pred cCCcccccchHHHHHHhhccCCCCCCCChhhHHHHHHHhHHHHHHcCCCCCCHHHHHHHHHHHHhhcceEEEEECCCChh
Q psy568 822 DESNVLESGFLERMNTLLANGEIPGLFEGDEYTTLMTQCKEGAQREGLMLDSNEELYKWFTQQVMKNLHVVFTMNPSSEG 901 (1614)
Q Consensus 822 ~d~~i~~~~~le~in~lL~~G~v~~Lf~~eE~~~i~~~~~~~~~~~~~~~~s~~~l~~~f~~rv~~nlhivl~~sp~~~~ 901 (1614)
||-+...+. +.- -...+. .+++..+.+ ..++.+|++.++. .
T Consensus 122 De~~~l~~~-----------~~~---~~~~~~---------------------~~~l~~~~~--~~~~~~i~~~~~~--~ 162 (195)
T 1jbk_A 122 DELHTMVGA-----------GKA---DGAMDA---------------------GNMLKPALA--RGELHCVGATTLD--E 162 (195)
T ss_dssp ETGGGGTT--------------------CCCC---------------------HHHHHHHHH--TTSCCEEEEECHH--H
T ss_pred eCHHHHhcc-----------Ccc---cchHHH---------------------HHHHHHhhc--cCCeEEEEeCCHH--H
Confidence 986543211 000 000000 011111111 1367777777653 3
Q ss_pred hHHHhhhCccccccceecccCCCcHHHHH
Q psy568 902 LKDRAATSPALFNRCVLNWFGDWSDTALY 930 (1614)
Q Consensus 902 ~r~~~~~~PaL~~~~~i~wf~~W~~eaL~ 930 (1614)
+.......|++.++|....+.+.+.+...
T Consensus 163 ~~~~~~~~~~l~~r~~~i~~~~p~~~~~~ 191 (195)
T 1jbk_A 163 YRQYIEKDAALERRFQKVFVAEPSVEDTI 191 (195)
T ss_dssp HHHHTTTCHHHHTTEEEEECCCCCHHHHH
T ss_pred HHHHHhcCHHHHHHhceeecCCCCHHHHH
Confidence 44444567889999987778888877654
No 92
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.99 E-value=1.7e-05 Score=95.08 Aligned_cols=74 Identities=15% Similarity=0.305 Sum_probs=53.7
Q ss_pred ceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCCCcccccccccEEEe
Q psy568 485 KWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLRHVPVIYV 564 (1614)
Q Consensus 485 k~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r~f~~i~i 564 (1614)
++-|+++||++.-. ....+.|+.+++.. . ++..+|.+++.+. .+.+.+.+||..+.+
T Consensus 134 ~~~vlilDE~~~L~------~~~~~~L~~~le~~-----~-------~~~~~Il~t~~~~-----~l~~~l~sR~~~~~~ 190 (354)
T 1sxj_E 134 RYKCVIINEANSLT------KDAQAALRRTMEKY-----S-------KNIRLIMVCDSMS-----PIIAPIKSQCLLIRC 190 (354)
T ss_dssp CCEEEEEECTTSSC------HHHHHHHHHHHHHS-----T-------TTEEEEEEESCSC-----SSCHHHHTTSEEEEC
T ss_pred CCeEEEEeCccccC------HHHHHHHHHHHHhh-----c-------CCCEEEEEeCCHH-----HHHHHHHhhceEEec
Confidence 45678889998832 22445555666541 1 2467778887654 578889999999999
Q ss_pred cCCChhHHHHHHHHHHH
Q psy568 565 DYPGETSLKQIYGTFSR 581 (1614)
Q Consensus 565 ~~p~~~~l~~I~~~~~~ 581 (1614)
+.|+.+++..++..++.
T Consensus 191 ~~~~~~~~~~~l~~~~~ 207 (354)
T 1sxj_E 191 PAPSDSEISTILSDVVT 207 (354)
T ss_dssp CCCCHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHH
Confidence 99999999999887665
No 93
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=97.98 E-value=5.1e-05 Score=91.61 Aligned_cols=89 Identities=15% Similarity=0.134 Sum_probs=56.9
Q ss_pred eEEEEeccCCCCCccc--cCc----ccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCCCcccccccc
Q psy568 486 WLVLFCDEINLPDMDK--YAT----QRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLRHV 559 (1614)
Q Consensus 486 ~~vlfiDdin~p~~d~--~g~----q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r~f 559 (1614)
..++|+||++....+. ++. ..+...|..++|...... ........++.||||..-.. .....+-|.|..||
T Consensus 251 ~~il~~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~--~~~~~d~~~ilfI~~gaf~~-~~~~dlipel~~R~ 327 (444)
T 1g41_A 251 NGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVST--KHGMVKTDHILFIASGAFQV-ARPSDLIPELQGRL 327 (444)
T ss_dssp HCEEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEE--TTEEEECTTCEEEEEECCSS-CCGGGSCHHHHTTC
T ss_pred CCeeeHHHHHHHhhccCCCCCCchHHHHHHHHHHHhccccccc--ccceecCCcEEEEecccccc-CChhhcchHHhccc
Confidence 4589999999655432 222 224456778888644332 11223446788999872111 01113557799999
Q ss_pred cE-EEecCCChhHHHHHHH
Q psy568 560 PV-IYVDYPGETSLKQIYG 577 (1614)
Q Consensus 560 ~~-i~i~~p~~~~l~~I~~ 577 (1614)
.+ +.++.++.+++.+|..
T Consensus 328 ~i~i~l~~lt~~e~~~Il~ 346 (444)
T 1g41_A 328 PIRVELTALSAADFERILT 346 (444)
T ss_dssp CEEEECCCCCHHHHHHHHH
T ss_pred ceeeeCCCCCHHHHHHHHH
Confidence 97 8999999999999984
No 94
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.86 E-value=3.6e-05 Score=90.36 Aligned_cols=169 Identities=20% Similarity=0.253 Sum_probs=100.8
Q ss_pred hHHHHHHHHHHHHHHh----c---cCCccEEEeecCCCChHHHHHHHHHHc---CCeEEEEEecCCCChhcHHHHHH---
Q psy568 738 LFDEVLDHVLRIDRIF----R---QPQGHLLLIGVSGAGKTTLSRFVAFMN---GLSVFQIRAHNKYTGADFDEDLR--- 804 (1614)
Q Consensus 738 lf~~~i~hi~ri~Ril----~---~p~gh~LLvG~~GsGKtsl~rlaA~~~---~~~~~~i~~~~~~~~~df~~~lk--- 804 (1614)
-...+++.+....+-. . .|.++++|+||+|+|||++++.+|... +.+++.+++....... ....+.
T Consensus 21 G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~-~~~~l~g~~ 99 (311)
T 4fcw_A 21 GQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKH-AVSRLIGAP 99 (311)
T ss_dssp SCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTT-HHHHHHCCC
T ss_pred CHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccc-cHHHhcCCC
Confidence 3345555544443332 2 356789999999999999999999876 5568888765432211 111110
Q ss_pred ---------HHHHHhccCCCcEEEEEcCCcccccchHHHHHHhhccCCCCCCCChhhHHHHHHHhHHHHHHcCCCCCCHH
Q psy568 805 ---------TVLRRSGCKNEKIAFLLDESNVLESGFLERMNTLLANGEIPGLFEGDEYTTLMTQCKEGAQREGLMLDSNE 875 (1614)
Q Consensus 805 ---------~~l~~ag~~~~~~v~ll~d~~i~~~~~le~in~lL~~G~v~~Lf~~eE~~~i~~~~~~~~~~~~~~~~s~~ 875 (1614)
..+..+-....+.++++|+-+-.++.....+..+|..|.+.+-. |...
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~-------------------~~~~---- 156 (311)
T 4fcw_A 100 PGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAHPDVFNILLQMLDDGRLTDSH-------------------GRTV---- 156 (311)
T ss_dssp TTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEECTT-------------------SCEE----
T ss_pred CccccccccchHHHHHHhCCCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCC-------------------CCEE----
Confidence 11222212233568889998777777777777777665443100 0000
Q ss_pred HHHHHHHHHHhhcceEEEEECCCCh-------------hhHHHh------hhCccccccc-eecccCCCcHHHHHHHHHH
Q psy568 876 ELYKWFTQQVMKNLHVVFTMNPSSE-------------GLKDRA------ATSPALFNRC-VLNWFGDWSDTALYQVAKE 935 (1614)
Q Consensus 876 ~l~~~f~~rv~~nlhivl~~sp~~~-------------~~r~~~------~~~PaL~~~~-~i~wf~~W~~eaL~~va~~ 935 (1614)
.+ +|.-++++.++... .+...+ ...|+|+++| .+..|.+.+.+.+..++.+
T Consensus 157 --------~~-~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~ 227 (311)
T 4fcw_A 157 --------DF-RNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEI 227 (311)
T ss_dssp --------EC-TTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHH
T ss_pred --------EC-CCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHH
Confidence 00 13337777666211 222222 3568899998 5777899999999999998
Q ss_pred hhcc
Q psy568 936 FTSK 939 (1614)
Q Consensus 936 ~l~~ 939 (1614)
++..
T Consensus 228 ~l~~ 231 (311)
T 4fcw_A 228 QMSY 231 (311)
T ss_dssp HTHH
T ss_pred HHHH
Confidence 8765
No 95
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.84 E-value=0.00012 Score=80.96 Aligned_cols=133 Identities=18% Similarity=0.194 Sum_probs=87.1
Q ss_pred CccEEEeecCCCChHHHHHHHHHHc-----CCeEEEEEecCCCChhcHHHHHHHHHHHhcc-CCCcEEEEEcCCcccccc
Q psy568 757 QGHLLLIGVSGAGKTTLSRFVAFMN-----GLSVFQIRAHNKYTGADFDEDLRTVLRRSGC-KNEKIAFLLDESNVLESG 830 (1614)
Q Consensus 757 ~gh~LLvG~~GsGKtsl~rlaA~~~-----~~~~~~i~~~~~~~~~df~~~lk~~l~~ag~-~~~~~v~ll~d~~i~~~~ 830 (1614)
.+|++|.|++|+|||++++.++... +..++.++.....+.....+.++........ .+++.++++||.+..++.
T Consensus 38 ~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~ 117 (226)
T 2chg_A 38 IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTAD 117 (226)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHHHHHHHHhcccCCCccCceEEEEeChhhcCHH
Confidence 3469999999999999999888653 3456777766555555555555444433222 357888999987665443
Q ss_pred hHHHHHHhhccCCCCCCCChhhHHHHHHHhHHHHHHcCCCCCCHHHHHHHHHHHHhhcceEEEEECCCChhhHHHhhhCc
Q psy568 831 FLERMNTLLANGEIPGLFEGDEYTTLMTQCKEGAQREGLMLDSNEELYKWFTQQVMKNLHVVFTMNPSSEGLKDRAATSP 910 (1614)
Q Consensus 831 ~le~in~lL~~G~v~~Lf~~eE~~~i~~~~~~~~~~~~~~~~s~~~l~~~f~~rv~~nlhivl~~sp~~~~~r~~~~~~P 910 (1614)
..+.+..++ +....+..++++.+... ...|
T Consensus 118 ~~~~l~~~l-------------------------------------------~~~~~~~~~i~~~~~~~-------~~~~ 147 (226)
T 2chg_A 118 AQAALRRTM-------------------------------------------EMYSKSCRFILSCNYVS-------RIIE 147 (226)
T ss_dssp HHHHHHHHH-------------------------------------------HHTTTTEEEEEEESCGG-------GSCH
T ss_pred HHHHHHHHH-------------------------------------------HhcCCCCeEEEEeCChh-------hcCH
Confidence 332222222 11233677777776532 2367
Q ss_pred cccccceecccCCCcHHHHHHHHHHhhcc
Q psy568 911 ALFNRCVLNWFGDWSDTALYQVAKEFTSK 939 (1614)
Q Consensus 911 aL~~~~~i~wf~~W~~eaL~~va~~~l~~ 939 (1614)
++.++|.+.-|.+++.+.+..+..+.+..
T Consensus 148 ~l~~r~~~i~~~~~~~~~~~~~l~~~~~~ 176 (226)
T 2chg_A 148 PIQSRCAVFRFKPVPKEAMKKRLLEICEK 176 (226)
T ss_dssp HHHTTSEEEECCCCCHHHHHHHHHHHHHH
T ss_pred HHHHhCceeecCCCCHHHHHHHHHHHHHH
Confidence 78888888889999999888887776643
No 96
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.83 E-value=6.4e-05 Score=92.14 Aligned_cols=131 Identities=16% Similarity=0.204 Sum_probs=85.0
Q ss_pred ccEEEeecCCCChHHHHHHHHHHcCCeEEEEEecCCCChhcHHHHHHHHHHHhccCCCcEEEEEcCCcccccchHHHHHH
Q psy568 758 GHLLLIGVSGAGKTTLSRFVAFMNGLSVFQIRAHNKYTGADFDEDLRTVLRRSGCKNEKIAFLLDESNVLESGFLERMNT 837 (1614)
Q Consensus 758 gh~LLvG~~GsGKtsl~rlaA~~~~~~~~~i~~~~~~~~~df~~~lk~~l~~ag~~~~~~v~ll~d~~i~~~~~le~in~ 837 (1614)
.++||+||+|+|||++++.+|...+.++..++... .+..++++.+..+.... ..+++.++++||.+-.+....+.+..
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~-~~~~~ir~~~~~a~~~~-~~~~~~iLfIDEI~~l~~~~q~~LL~ 128 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYANADVERISAVT-SGVKEIREAIERARQNR-NAGRRTILFVDEVHRFNKSQQDAFLP 128 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTT-CCHHHHHHHHHHHHHHH-HTTCCEEEEEETTTCC------CCHH
T ss_pred cEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEecc-CCHHHHHHHHHHHHHhh-hcCCCcEEEEeChhhhCHHHHHHHHH
Confidence 36999999999999999999999999999887542 34555554444433222 25677889998865433221111111
Q ss_pred hhccCCCCCCCChhhHHHHHHHhHHHHHHcCCCCCCHHHHHHHHHHHHhhcceEEEEECCCChhhHHHhhhCccccccce
Q psy568 838 LLANGEIPGLFEGDEYTTLMTQCKEGAQREGLMLDSNEELYKWFTQQVMKNLHVVFTMNPSSEGLKDRAATSPALFNRCV 917 (1614)
Q Consensus 838 lL~~G~v~~Lf~~eE~~~i~~~~~~~~~~~~~~~~s~~~l~~~f~~rv~~nlhivl~~sp~~~~~r~~~~~~PaL~~~~~ 917 (1614)
.|.. ..+-+|.+.... .. ....|+|.++|.
T Consensus 129 ~le~---------------------------------------------~~v~lI~att~n-~~----~~l~~aL~sR~~ 158 (447)
T 3pvs_A 129 HIED---------------------------------------------GTITFIGATTEN-PS----FELNSALLSRAR 158 (447)
T ss_dssp HHHT---------------------------------------------TSCEEEEEESSC-GG----GSSCHHHHTTEE
T ss_pred HHhc---------------------------------------------CceEEEecCCCC-cc----cccCHHHhCcee
Confidence 1100 124444444221 11 234689999999
Q ss_pred ecccCCCcHHHHHHHHHHhhccc
Q psy568 918 LNWFGDWSDTALYQVAKEFTSKI 940 (1614)
Q Consensus 918 i~wf~~W~~eaL~~va~~~l~~~ 940 (1614)
+.-|.+++.+.+..+..+++...
T Consensus 159 v~~l~~l~~edi~~il~~~l~~~ 181 (447)
T 3pvs_A 159 VYLLKSLSTEDIEQVLTQAMEDK 181 (447)
T ss_dssp EEECCCCCHHHHHHHHHHHHHCT
T ss_pred EEeeCCcCHHHHHHHHHHHHHHH
Confidence 99999999999999999998753
No 97
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.79 E-value=0.00015 Score=85.45 Aligned_cols=125 Identities=16% Similarity=0.201 Sum_probs=84.0
Q ss_pred EEEeecCCCChHHHHHHHHHHcCCeEEEEEecCCCChhcHHHHHHHHHHHhccCCCcEEEEEcCCcccc-cchHHHHHHh
Q psy568 760 LLLIGVSGAGKTTLSRFVAFMNGLSVFQIRAHNKYTGADFDEDLRTVLRRSGCKNEKIAFLLDESNVLE-SGFLERMNTL 838 (1614)
Q Consensus 760 ~LLvG~~GsGKtsl~rlaA~~~~~~~~~i~~~~~~~~~df~~~lk~~l~~ag~~~~~~v~ll~d~~i~~-~~~le~in~l 838 (1614)
+|+.||+|+|||++++.+|...+.++++++.+. .+..+.++.++.........+.+.++++||.+... ....+.
T Consensus 51 ~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~-~~~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~~~~~~~---- 125 (324)
T 3u61_B 51 ILHSPSPGTGKTTVAKALCHDVNADMMFVNGSD-CKIDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGLAESQRH---- 125 (324)
T ss_dssp EEECSSTTSSHHHHHHHHHHHTTEEEEEEETTT-CCHHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGGHHHHHH----
T ss_pred EEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccc-cCHHHHHHHHHHHHhhcccCCCCeEEEEECCcccCcHHHHHH----
Confidence 566677999999999999999999999998643 34444444444444444445678889999875543 111111
Q ss_pred hccCCCCCCCChhhHHHHHHHhHHHHHHcCCCCCCHHHHHHHHHHHHhhcceEEEEECCCChhhHHHhhhCcccccccee
Q psy568 839 LANGEIPGLFEGDEYTTLMTQCKEGAQREGLMLDSNEELYKWFTQQVMKNLHVVFTMNPSSEGLKDRAATSPALFNRCVL 918 (1614)
Q Consensus 839 L~~G~v~~Lf~~eE~~~i~~~~~~~~~~~~~~~~s~~~l~~~f~~rv~~nlhivl~~sp~~~~~r~~~~~~PaL~~~~~i 918 (1614)
+..+++....+..+|++.++.. ...|+|.++|.+
T Consensus 126 ---------------------------------------L~~~le~~~~~~~iI~~~n~~~-------~l~~~l~sR~~~ 159 (324)
T 3u61_B 126 ---------------------------------------LRSFMEAYSSNCSIIITANNID-------GIIKPLQSRCRV 159 (324)
T ss_dssp ---------------------------------------HHHHHHHHGGGCEEEEEESSGG-------GSCTTHHHHSEE
T ss_pred ---------------------------------------HHHHHHhCCCCcEEEEEeCCcc-------ccCHHHHhhCcE
Confidence 1112233346788999887643 346889999999
Q ss_pred cccCCCcHHHHHHHHHH
Q psy568 919 NWFGDWSDTALYQVAKE 935 (1614)
Q Consensus 919 ~wf~~W~~eaL~~va~~ 935 (1614)
.-|.+.+.+.+..+...
T Consensus 160 i~~~~~~~~e~~~il~~ 176 (324)
T 3u61_B 160 ITFGQPTDEDKIEMMKQ 176 (324)
T ss_dssp EECCCCCHHHHHHHHHH
T ss_pred EEeCCCCHHHHHHHHHH
Confidence 89999998875554433
No 98
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.76 E-value=0.0002 Score=85.10 Aligned_cols=146 Identities=16% Similarity=0.226 Sum_probs=95.0
Q ss_pred cCCccEEEeecCCCChHHHHHHHHHHcCCeEEEEEecCCCChhcHHHHHHHHHHHhccCCCcEEEEEcCCcccccchHHH
Q psy568 755 QPQGHLLLIGVSGAGKTTLSRFVAFMNGLSVFQIRAHNKYTGADFDEDLRTVLRRSGCKNEKIAFLLDESNVLESGFLER 834 (1614)
Q Consensus 755 ~p~gh~LLvG~~GsGKtsl~rlaA~~~~~~~~~i~~~~~~~~~df~~~lk~~l~~ag~~~~~~v~ll~d~~i~~~~~le~ 834 (1614)
.+..|+||.|++|+|||++++.+|...+.+++.++........++. ..+.. ...+.++++||-+-..+...+.
T Consensus 53 ~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~~----~~~~~---~~~~~vl~lDEi~~l~~~~~~~ 125 (338)
T 3pfi_A 53 ECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIEKSGDLA----AILTN---LSEGDILFIDEIHRLSPAIEEV 125 (338)
T ss_dssp SCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCCSHHHHH----HHHHT---CCTTCEEEEETGGGCCHHHHHH
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhccchhHHH----HHHHh---ccCCCEEEEechhhcCHHHHHH
Confidence 3456899999999999999999999999999998876544434333 33333 2456788889987777777777
Q ss_pred HHHhhccCCCCCCCChhhHHHHHHHhHHHHHHcCCCCCCHHHHHHHHHHHHhhcceEEEEECCCChhhHHHhhhCccccc
Q psy568 835 MNTLLANGEIPGLFEGDEYTTLMTQCKEGAQREGLMLDSNEELYKWFTQQVMKNLHVVFTMNPSSEGLKDRAATSPALFN 914 (1614)
Q Consensus 835 in~lL~~G~v~~Lf~~eE~~~i~~~~~~~~~~~~~~~~s~~~l~~~f~~rv~~nlhivl~~sp~~~~~r~~~~~~PaL~~ 914 (1614)
+...|..+.+.-+..... .......+ ..++.+|.+.++.+. ..|+|.+
T Consensus 126 Ll~~l~~~~~~~~~~~~~------------~~~~~~~~-------------~~~~~~i~atn~~~~-------l~~~L~~ 173 (338)
T 3pfi_A 126 LYPAMEDYRLDIIIGSGP------------AAQTIKID-------------LPKFTLIGATTRAGM-------LSNPLRD 173 (338)
T ss_dssp HHHHHHTSCC---------------------CCCCCCC-------------CCCCEEEEEESCGGG-------SCHHHHT
T ss_pred HHHHHHhccchhhcccCc------------cccceecC-------------CCCeEEEEeCCCccc-------cCHHHHh
Confidence 777776665432221000 00000000 013566666665321 4577888
Q ss_pred cc-eecccCCCcHHHHHHHHHHhhcc
Q psy568 915 RC-VLNWFGDWSDTALYQVAKEFTSK 939 (1614)
Q Consensus 915 ~~-~i~wf~~W~~eaL~~va~~~l~~ 939 (1614)
+| .+..+.+.+.+.+..+..+++..
T Consensus 174 R~~~~i~l~~~~~~e~~~il~~~~~~ 199 (338)
T 3pfi_A 174 RFGMQFRLEFYKDSELALILQKAALK 199 (338)
T ss_dssp TCSEEEECCCCCHHHHHHHHHHHHHH
T ss_pred hcCEEeeCCCcCHHHHHHHHHHHHHh
Confidence 88 67789999999998888877664
No 99
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.74 E-value=0.00016 Score=89.51 Aligned_cols=75 Identities=20% Similarity=0.243 Sum_probs=50.6
Q ss_pred EEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCC-------C-CCCCCCCcccccccc
Q psy568 488 VLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPP-------T-DPGRKPLSHRFLRHV 559 (1614)
Q Consensus 488 vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~-------~-~~g~~~l~~r~~r~f 559 (1614)
|+||||+|+- +....+.|+..++... .++.+++| |++ . ......+++.+++||
T Consensus 298 VliIDEa~~l------~~~a~~aLlk~lEe~~------------~~~~il~t-n~~~~~i~~~~~~~~~~~l~~~i~sR~ 358 (456)
T 2c9o_A 298 VLFVDEVHML------DIECFTYLHRALESSI------------APIVIFAS-NRGNCVIRGTEDITSPHGIPLDLLDRV 358 (456)
T ss_dssp EEEEESGGGC------BHHHHHHHHHHTTSTT------------CCEEEEEE-CCSEEECBTTSSCEEETTCCHHHHTTE
T ss_pred EEEEechhhc------CHHHHHHHHHHhhccC------------CCEEEEec-CCccccccccccccccccCChhHHhhc
Confidence 7888888883 3446666666666421 12323344 441 0 012447889999999
Q ss_pred cEEEecCCChhHHHHHHHHHHH
Q psy568 560 PVIYVDYPGETSLKQIYGTFSR 581 (1614)
Q Consensus 560 ~~i~i~~p~~~~l~~I~~~~~~ 581 (1614)
..+.+++++.+++..|+.....
T Consensus 359 ~~~~~~~~~~~e~~~iL~~~~~ 380 (456)
T 2c9o_A 359 MIIRTMLYTPQEMKQIIKIRAQ 380 (456)
T ss_dssp EEEECCCCCHHHHHHHHHHHHH
T ss_pred ceeeCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999876654
No 100
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.68 E-value=0.00058 Score=82.04 Aligned_cols=32 Identities=13% Similarity=0.118 Sum_probs=27.2
Q ss_pred hCccccccceecccCCCcHHHHHHHHHHhhcc
Q psy568 908 TSPALFNRCVLNWFGDWSDTALYQVAKEFTSK 939 (1614)
Q Consensus 908 ~~PaL~~~~~i~wf~~W~~eaL~~va~~~l~~ 939 (1614)
.-|+|.++|.+..|.+++.+.+..+..+.+..
T Consensus 243 l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~ 274 (368)
T 3uk6_A 243 IPIDLLDRLLIVSTTPYSEKDTKQILRIRCEE 274 (368)
T ss_dssp CCHHHHTTEEEEEECCCCHHHHHHHHHHHHHH
T ss_pred CCHHHHhhccEEEecCCCHHHHHHHHHHHHHH
Confidence 34788889998899999999999999887764
No 101
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=97.66 E-value=2.3e-05 Score=93.69 Aligned_cols=151 Identities=21% Similarity=0.282 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHhccEEEEecCCCCChhhHHHHHHHHHHHhh---cCCce-----------------------EEEeCCC
Q psy568 30 MEKVLQLYQISNLNHGLMMVGPSGSGKSTAWKVLLKALERYE---GVEGV-----------------------AHIIDPK 83 (1614)
Q Consensus 30 ~~K~~qL~e~~~~r~gVmlvG~~gsGKTt~~~~L~~al~~~~---~~~~~-----------------------~~~inPk 83 (1614)
+.+.+++.-......+|+|+||||+|||++.+.+++.+.... +.+.. ..+--|.
T Consensus 32 ~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (350)
T 1g8p_A 32 MKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPDWATVLSTNVIRKPTPVVDLPL 111 (350)
T ss_dssp HHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGGSCTTCCCSCCCEEEECCCEEEECT
T ss_pred HHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhCccccccccccccccccccccchhhhhccccccCCCcccccCC
Confidence 444555444434566799999999999999999999764210 00000 0011133
Q ss_pred CCCcCcccccccC------CCCccccchHHHHHHHHHhhhcCCCCCceEEEEcc--CCChhhhhhhhhhhcCCCccccCC
Q psy568 84 AISKEALYGVLDP------NTREWTDGLFTHILRRIIDNVRGEISKRQWIIFDG--DVDPEWVENLNSVLDDNKLLTLPN 155 (1614)
Q Consensus 84 ais~~eLyG~~d~------~t~eW~DGvls~i~r~~~~~~~~~~~~~~WivfDG--~vd~~WiE~lnsvLDdnk~L~L~n 155 (1614)
..+..+++|..+. ....+..|.+... ...++++|- .+++.-.+.|..+|++........
T Consensus 112 ~~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~a-------------~~~vl~iDEi~~l~~~~~~~Ll~~le~~~~~~~~~ 178 (350)
T 1g8p_A 112 GVSEDRVVGALDIERAISKGEKAFEPGLLARA-------------NRGYLYIDECNLLEDHIVDLLLDVAQSGENVVERD 178 (350)
T ss_dssp TCCHHHHHCEECHHHHHHHCGGGEECCHHHHH-------------TTEEEEETTGGGSCHHHHHHHHHHHHHSEEEECCT
T ss_pred CcchhhheeechhhhhhcCCceeecCceeeec-------------CCCEEEEeChhhCCHHHHHHHHHHHhcCceEEEec
Confidence 3445566665321 1123444543321 136899994 566666777778888765555567
Q ss_pred CceeeCCCCceEEEEecccc-ccCcccccccee-EEecCc
Q psy568 156 GERLSLPPNIRIMFEVQDLK-YATLATVSRCGM-IWFSED 193 (1614)
Q Consensus 156 Geri~l~~~~~~iFEv~dL~-~ASPAtVSRcgm-v~~~~~ 193 (1614)
|.....+.++.+|.-+.... ...|+..+||++ +.+.+-
T Consensus 179 g~~~~~~~~~~li~~~n~~~~~l~~~L~~R~~~~~~l~~~ 218 (350)
T 1g8p_A 179 GLSIRHPARFVLVGSGNPEEGDLRPQLLDRFGLSVEVLSP 218 (350)
T ss_dssp TCCEEEECCEEEEEEECSCSCCCCHHHHTTCSEEEECCCC
T ss_pred ceEEeeCCceEEEEEeCCCCCCCCHHHHhhcceEEEcCCC
Confidence 88888888898888776433 678999999998 777654
No 102
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.59 E-value=0.00059 Score=77.62 Aligned_cols=69 Identities=20% Similarity=0.289 Sum_probs=48.9
Q ss_pred CccEEEeecCCCChHHHHHHHHHHcCCeEEEEEecCCCC--hhcHHHHHHHHHHHhccCCCcEEEEEcCCcc
Q psy568 757 QGHLLLIGVSGAGKTTLSRFVAFMNGLSVFQIRAHNKYT--GADFDEDLRTVLRRSGCKNEKIAFLLDESNV 826 (1614)
Q Consensus 757 ~gh~LLvG~~GsGKtsl~rlaA~~~~~~~~~i~~~~~~~--~~df~~~lk~~l~~ag~~~~~~v~ll~d~~i 826 (1614)
..++||+|++|+|||++++.+|...+.+++.++.....+ ..+-...++.++..+. ...+.++++||-+.
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~~~vl~iDeid~ 109 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEAR-ARAPCIVYIDEIDA 109 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSSTTHHHHHHHHHHHHHH-HTCSEEEEEECC--
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhccChhHHHHHHHHHHHH-hcCCeEEEEeCcch
Confidence 345999999999999999999999999999988664322 1122344556666554 34578888888644
No 103
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.58 E-value=0.00011 Score=86.99 Aligned_cols=71 Identities=23% Similarity=0.357 Sum_probs=54.9
Q ss_pred hccCCccEEEeecCCCChHHHHHHHHHHcCCeEEEEEecCCCC--hhcHHHHHHHHHHHhccCCCcEEEEEcCCc
Q psy568 753 FRQPQGHLLLIGVSGAGKTTLSRFVAFMNGLSVFQIRAHNKYT--GADFDEDLRTVLRRSGCKNEKIAFLLDESN 825 (1614)
Q Consensus 753 l~~p~gh~LLvG~~GsGKtsl~rlaA~~~~~~~~~i~~~~~~~--~~df~~~lk~~l~~ag~~~~~~v~ll~d~~ 825 (1614)
+..|+| +||.||||||||.+++.+|.-+|.+++.+..+.-.+ ..+-...++.++..|. ...|+++++|+-+
T Consensus 179 i~~prG-vLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~vGese~~vr~lF~~Ar-~~aP~IIFiDEiD 251 (405)
T 4b4t_J 179 IAQPKG-VILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAR-EHAPSIIFMDEID 251 (405)
T ss_dssp CCCCCC-EEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSSTTHHHHHHHHHHHHHH-HTCSEEEEEESSS
T ss_pred CCCCCc-eEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhccccchHHHHHHHHHHHHH-HhCCceEeeecch
Confidence 456677 999999999999999999999999999998664433 2233345777777764 5568888888754
No 104
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.55 E-value=0.00017 Score=77.12 Aligned_cols=94 Identities=20% Similarity=0.346 Sum_probs=64.3
Q ss_pred cCCccEEEeecCCCChHHHHHHHHHHc----------CCeEEEEEecCCC----ChhcHHHHHHHHHHHhccCCCcEEEE
Q psy568 755 QPQGHLLLIGVSGAGKTTLSRFVAFMN----------GLSVFQIRAHNKY----TGADFDEDLRTVLRRSGCKNEKIAFL 820 (1614)
Q Consensus 755 ~p~gh~LLvG~~GsGKtsl~rlaA~~~----------~~~~~~i~~~~~~----~~~df~~~lk~~l~~ag~~~~~~v~l 820 (1614)
...++++|+|++|+|||++++.+|... +..++.+++.... ...++.+.++.++......+.+.+++
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~ 120 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMF 120 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEE
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEE
Confidence 345689999999999999999888765 7788877654321 22334455666666555556788999
Q ss_pred EcCCcccc---------cchHHHHHHhhccCCCCCCC
Q psy568 821 LDESNVLE---------SGFLERMNTLLANGEIPGLF 848 (1614)
Q Consensus 821 l~d~~i~~---------~~~le~in~lL~~G~v~~Lf 848 (1614)
+||-+... ..+.+.+..++..+.+.-+.
T Consensus 121 iDe~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ii~ 157 (187)
T 2p65_A 121 IDEIHTVVGAGAVAEGALDAGNILKPMLARGELRCIG 157 (187)
T ss_dssp ETTGGGGSSSSSSCTTSCCTHHHHHHHHHTTCSCEEE
T ss_pred EeCHHHhcccccccccchHHHHHHHHHHhcCCeeEEE
Confidence 99877654 45666666666666554444
No 105
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.53 E-value=0.0005 Score=83.18 Aligned_cols=150 Identities=20% Similarity=0.222 Sum_probs=83.2
Q ss_pred ccCCccEEEeecCCCChHHHHHHHHHHcCCeEEEEEecCCCC--hhcHHHHHHHHHHHhccCCCcEEEEEcCCcccccch
Q psy568 754 RQPQGHLLLIGVSGAGKTTLSRFVAFMNGLSVFQIRAHNKYT--GADFDEDLRTVLRRSGCKNEKIAFLLDESNVLESGF 831 (1614)
Q Consensus 754 ~~p~gh~LLvG~~GsGKtsl~rlaA~~~~~~~~~i~~~~~~~--~~df~~~lk~~l~~ag~~~~~~v~ll~d~~i~~~~~ 831 (1614)
..|..++||+|++|+|||++++.+|..++.+++.++.....+ ..+....++.++..+. ...+.++++||-+-.
T Consensus 145 ~~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~-~~~~~il~iDEid~l---- 219 (389)
T 3vfd_A 145 RAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVAR-ELQPSIIFIDQVDSL---- 219 (389)
T ss_dssp GCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC-------CHHHHHHHHHHHH-HSSSEEEEEETGGGG----
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhccccchHHHHHHHHHHHHH-hcCCeEEEEECchhh----
Confidence 355668999999999999999999999999999998765433 2233444556655553 335678888885432
Q ss_pred HHHHHHhhccCCCCCCCChhhHHHHHHHhHHHHHHcCCCCCCHHHHHHHHHHHHhhcceEEEEECCCChhhHHHhhhCcc
Q psy568 832 LERMNTLLANGEIPGLFEGDEYTTLMTQCKEGAQREGLMLDSNEELYKWFTQQVMKNLHVVFTMNPSSEGLKDRAATSPA 911 (1614)
Q Consensus 832 le~in~lL~~G~v~~Lf~~eE~~~i~~~~~~~~~~~~~~~~s~~~l~~~f~~rv~~nlhivl~~sp~~~~~r~~~~~~Pa 911 (1614)
+.... .+. .+....+...+...... +......++.||.+.++.. ..-|+
T Consensus 220 -------~~~~~-~~~--~~~~~~~~~~ll~~l~~--------------~~~~~~~~v~vI~atn~~~-------~l~~~ 268 (389)
T 3vfd_A 220 -------LCERR-EGE--HDASRRLKTEFLIEFDG--------------VQSAGDDRVLVMGATNRPQ-------ELDEA 268 (389)
T ss_dssp -------C-----------CTHHHHHHHHHHHHHH--------------HC-----CEEEEEEESCGG-------GCCHH
T ss_pred -------cccCC-Ccc--chHHHHHHHHHHHHhhc--------------ccccCCCCEEEEEecCCch-------hcCHH
Confidence 11000 000 00111111111111100 0011123455665665522 23577
Q ss_pred ccccce-ecccCCCcHHHHHHHHHHhhcc
Q psy568 912 LFNRCV-LNWFGDWSDTALYQVAKEFTSK 939 (1614)
Q Consensus 912 L~~~~~-i~wf~~W~~eaL~~va~~~l~~ 939 (1614)
+.++|. +.+|..-+.+....+...++..
T Consensus 269 l~~R~~~~i~i~~p~~~~r~~il~~~~~~ 297 (389)
T 3vfd_A 269 VLRRFIKRVYVSLPNEETRLLLLKNLLCK 297 (389)
T ss_dssp HHTTCCEEEECCCCCHHHHHHHHHHHHTT
T ss_pred HHcCcceEEEcCCcCHHHHHHHHHHHHHh
Confidence 777775 5677777778888888777654
No 106
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.53 E-value=0.00024 Score=85.52 Aligned_cols=70 Identities=26% Similarity=0.361 Sum_probs=54.3
Q ss_pred hccCCccEEEeecCCCChHHHHHHHHHHcCCeEEEEEecCCCC--hhcHHHHHHHHHHHhccCCCcEEEEEcCC
Q psy568 753 FRQPQGHLLLIGVSGAGKTTLSRFVAFMNGLSVFQIRAHNKYT--GADFDEDLRTVLRRSGCKNEKIAFLLDES 824 (1614)
Q Consensus 753 l~~p~gh~LLvG~~GsGKtsl~rlaA~~~~~~~~~i~~~~~~~--~~df~~~lk~~l~~ag~~~~~~v~ll~d~ 824 (1614)
+..|+| +||.||||||||++++.+|..+|.+++.+..+.-.+ ..+-...++.++..|. ...|+++++|+.
T Consensus 203 ~~~prG-iLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~~~Ge~e~~ir~lF~~A~-~~aP~IifiDEi 274 (428)
T 4b4t_K 203 IDPPRG-VLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLAR-ENAPSIIFIDEV 274 (428)
T ss_dssp CCCCCE-EEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCSSCSHHHHHHHHHHHHHH-HTCSEEEEEECT
T ss_pred CCCCce-EEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhccccchhHHHHHHHHHHHH-HcCCCeeechhh
Confidence 456777 999999999999999999999999999998765433 2223345677777664 456888888874
No 107
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=97.51 E-value=9.4e-05 Score=90.53 Aligned_cols=157 Identities=14% Similarity=0.113 Sum_probs=87.1
Q ss_pred CCCEEE--ecCCCCchHHHHHHHHhcCC--------CCceEEEEcccCCCHHHHHhHhhcccceeecCCcc----cc---
Q psy568 416 HKPLVL--CGPPGSGKTMTLLSALRALP--------DMEVVSLNFSSATTPELLLKTFDHYCEYRKTPNGV----IL--- 478 (1614)
Q Consensus 416 ~~~vLL--~Gp~GtGKT~lv~~~~~~l~--------~~~~~~i~~s~~t~~~~l~~~~~~~~~~~~~~~g~----~~--- 478 (1614)
+.+++| +||+|+|||++++.+++.+. +..++.++|....++..+...+-..+.......|. +.
T Consensus 50 ~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l 129 (412)
T 1w5s_A 50 DVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKAL 129 (412)
T ss_dssp CEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHH
T ss_pred CCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHH
Confidence 456888 99999999999999887652 34567888877667666554443222111000010 00
Q ss_pred -ccc-cCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCCCc---c
Q psy568 479 -SPI-QLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLS---H 553 (1614)
Q Consensus 479 -~p~-~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~---~ 553 (1614)
... ..++++|++|||++......-+.+..+..|..+++... ..+ . ..++.+|++++.+. -...+. +
T Consensus 130 ~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~---~~~-~---~~~v~lI~~~~~~~--~~~~l~~~~~ 200 (412)
T 1w5s_A 130 VDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIP---SRD-G---VNRIGFLLVASDVR--ALSYMREKIP 200 (412)
T ss_dssp HHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSC---CTT-S---CCBEEEEEEEEETH--HHHHHHHHCH
T ss_pred HHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcc---cCC-C---CceEEEEEEecccc--HHHHHhhhcc
Confidence 000 12567899999998632210012344543333443310 000 0 13577888876432 011223 3
Q ss_pred ccccccc-EEEecCCChhHHHHHHHHHHH
Q psy568 554 RFLRHVP-VIYVDYPGETSLKQIYGTFSR 581 (1614)
Q Consensus 554 r~~r~f~-~i~i~~p~~~~l~~I~~~~~~ 581 (1614)
++.++|. .+.++.++.+++..++...+.
T Consensus 201 ~~~~~~~~~i~l~~l~~~e~~~ll~~~~~ 229 (412)
T 1w5s_A 201 QVESQIGFKLHLPAYKSRELYTILEQRAE 229 (412)
T ss_dssp HHHTTCSEEEECCCCCHHHHHHHHHHHHH
T ss_pred hhhhhcCCeeeeCCCCHHHHHHHHHHHHH
Confidence 4444443 388999999999999876554
No 108
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.47 E-value=0.00033 Score=84.45 Aligned_cols=71 Identities=25% Similarity=0.369 Sum_probs=53.8
Q ss_pred hccCCccEEEeecCCCChHHHHHHHHHHcCCeEEEEEecCCCC--hhcHHHHHHHHHHHhccCCCcEEEEEcCCc
Q psy568 753 FRQPQGHLLLIGVSGAGKTTLSRFVAFMNGLSVFQIRAHNKYT--GADFDEDLRTVLRRSGCKNEKIAFLLDESN 825 (1614)
Q Consensus 753 l~~p~gh~LLvG~~GsGKtsl~rlaA~~~~~~~~~i~~~~~~~--~~df~~~lk~~l~~ag~~~~~~v~ll~d~~ 825 (1614)
+..|+| +||.||||||||++++.+|.-+|.+++.+..+.-.+ ..+-...++.++..|. ...|+++++|+-+
T Consensus 212 ~~~prG-vLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk~~Gese~~ir~~F~~A~-~~~P~IifiDEiD 284 (437)
T 4b4t_L 212 IKPPKG-VLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYAK-EHEPCIIFMDEVD 284 (437)
T ss_dssp CCCCCE-EEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCSSSSHHHHHHHHHHHHHH-HSCSEEEEEECCC
T ss_pred CCCCCe-EEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhccccchHHHHHHHHHHHHHH-hcCCceeeeeccc
Confidence 456677 999999999999999999999999999998665433 1222334566666653 5678999998854
No 109
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.43 E-value=0.00031 Score=84.24 Aligned_cols=71 Identities=21% Similarity=0.326 Sum_probs=54.2
Q ss_pred hccCCccEEEeecCCCChHHHHHHHHHHcCCeEEEEEecCCCC--hhcHHHHHHHHHHHhccCCCcEEEEEcCCc
Q psy568 753 FRQPQGHLLLIGVSGAGKTTLSRFVAFMNGLSVFQIRAHNKYT--GADFDEDLRTVLRRSGCKNEKIAFLLDESN 825 (1614)
Q Consensus 753 l~~p~gh~LLvG~~GsGKtsl~rlaA~~~~~~~~~i~~~~~~~--~~df~~~lk~~l~~ag~~~~~~v~ll~d~~ 825 (1614)
++.|+| +||.||+|||||++++.+|.-++.+++.+..+.-.+ ..+-...++.++..|. ...|+++++|+.+
T Consensus 240 i~pprG-ILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk~vGesek~ir~lF~~Ar-~~aP~IIfiDEiD 312 (467)
T 4b4t_H 240 IDPPKG-ILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMAR-TKKACIIFFDEID 312 (467)
T ss_dssp CCCCSE-EEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCCSSSHHHHHHHHHHHHHH-HTCSEEEEEECCT
T ss_pred CCCCCc-eEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcccCCHHHHHHHHHHHHHH-hcCCceEeecccc
Confidence 456777 999999999999999999999999999998664433 2222345666776664 4568888888754
No 110
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.42 E-value=0.0015 Score=72.92 Aligned_cols=128 Identities=16% Similarity=0.268 Sum_probs=81.2
Q ss_pred ccEEEeecCCCChHHHHHHHHHHcCC------------------------eEEEEEecCCCChhcHHHHHHHHHHHhc--
Q psy568 758 GHLLLIGVSGAGKTTLSRFVAFMNGL------------------------SVFQIRAHNKYTGADFDEDLRTVLRRSG-- 811 (1614)
Q Consensus 758 gh~LLvG~~GsGKtsl~rlaA~~~~~------------------------~~~~i~~~~~~~~~df~~~lk~~l~~ag-- 811 (1614)
+.++|.|++|+|||++++.++...+. .++.+.... ....+.++.++....
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 121 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAAS----RTKVEDTRDLLDNVQYA 121 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCSSEEEEETTC----GGGHHHHHHHHHSCCCS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCCcceEEecCcc----cccHHHHHHHHHHhhhc
Confidence 35899999999999999988865533 233332221 123445666665543
Q ss_pred -cCCCcEEEEEcCCcccccchHHHHHHhhccCCCCCCCChhhHHHHHHHhHHHHHHcCCCCCCHHHHHHHHHHHHhhcce
Q psy568 812 -CKNEKIAFLLDESNVLESGFLERMNTLLANGEIPGLFEGDEYTTLMTQCKEGAQREGLMLDSNEELYKWFTQQVMKNLH 890 (1614)
Q Consensus 812 -~~~~~~v~ll~d~~i~~~~~le~in~lL~~G~v~~Lf~~eE~~~i~~~~~~~~~~~~~~~~s~~~l~~~f~~rv~~nlh 890 (1614)
..+++.++++||.+-.++..++.+-.++ ++...+.+
T Consensus 122 ~~~~~~~vlviDe~~~l~~~~~~~l~~~l-------------------------------------------~~~~~~~~ 158 (250)
T 1njg_A 122 PARGRFKVYLIDEVHMLSRHSFNALLKTL-------------------------------------------EEPPEHVK 158 (250)
T ss_dssp CSSSSSEEEEEETGGGSCHHHHHHHHHHH-------------------------------------------HSCCTTEE
T ss_pred hhcCCceEEEEECcccccHHHHHHHHHHH-------------------------------------------hcCCCceE
Confidence 3557889999987655443332222222 11123677
Q ss_pred EEEEECCCChhhHHHhhhCccccccceecccCCCcHHHHHHHHHHhhcc
Q psy568 891 VVFTMNPSSEGLKDRAATSPALFNRCVLNWFGDWSDTALYQVAKEFTSK 939 (1614)
Q Consensus 891 ivl~~sp~~~~~r~~~~~~PaL~~~~~i~wf~~W~~eaL~~va~~~l~~ 939 (1614)
++++.+... ...|++.++|.+..+.+++.+.+..+..+++..
T Consensus 159 ~i~~t~~~~-------~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~ 200 (250)
T 1njg_A 159 FLLATTDPQ-------KLPVTILSRCLQFHLKALDVEQIRHQLEHILNE 200 (250)
T ss_dssp EEEEESCGG-------GSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHH
T ss_pred EEEEeCChH-------hCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHh
Confidence 888765422 235667788888889999999998888877754
No 111
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=97.39 E-value=0.00054 Score=82.55 Aligned_cols=89 Identities=22% Similarity=0.338 Sum_probs=55.9
Q ss_pred ccCCccEEEeecCCCChHHHHHHHHHHcCCeEEEEEecCC----CChhcHHHHHHHHHHHhc---cCCCcEEEEEcCCcc
Q psy568 754 RQPQGHLLLIGVSGAGKTTLSRFVAFMNGLSVFQIRAHNK----YTGADFDEDLRTVLRRSG---CKNEKIAFLLDESNV 826 (1614)
Q Consensus 754 ~~p~gh~LLvG~~GsGKtsl~rlaA~~~~~~~~~i~~~~~----~~~~df~~~lk~~l~~ag---~~~~~~v~ll~d~~i 826 (1614)
..+.+|+||+|++|+|||++++.+|...+.+++.++.... |...+..+.+..++..+. ....+.++++||.+-
T Consensus 69 ~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~ 148 (376)
T 1um8_A 69 ELSKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDK 148 (376)
T ss_dssp TCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGG
T ss_pred ccCCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHH
Confidence 4567789999999999999999999999999999886542 212222333444433221 012456788888766
Q ss_pred cccc--------------hHHHHHHhhccC
Q psy568 827 LESG--------------FLERMNTLLANG 842 (1614)
Q Consensus 827 ~~~~--------------~le~in~lL~~G 842 (1614)
.... +.+.+..+|..+
T Consensus 149 l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~ 178 (376)
T 1um8_A 149 ISRLSENRSITRDVSGEGVQQALLKIVEGS 178 (376)
T ss_dssp C--------------CHHHHHHHHHHHHCC
T ss_pred HhhhcCCCceecccchHHHHHHHHHHhhcc
Confidence 5554 555566666544
No 112
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=97.38 E-value=0.00039 Score=73.93 Aligned_cols=133 Identities=17% Similarity=0.219 Sum_probs=75.0
Q ss_pred HHHHHHHHHhc---CCCEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCCHHHHHhHhhcccceeecCCccccccc
Q psy568 405 HESLLYTWLAE---HKPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTPELLLKTFDHYCEYRKTPNGVILSPI 481 (1614)
Q Consensus 405 ~~~ll~~~l~~---~~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~~~~l~~~~~~~~~~~~~~~g~~~~p~ 481 (1614)
....+..++.. +.+++++||||||||+++..+++.+.+. + ++|....+ .-.+.|.
T Consensus 44 f~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l~g~-i--~~fans~s-------------------~f~l~~l 101 (212)
T 1tue_A 44 FLGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQGA-V--ISFVNSTS-------------------HFWLEPL 101 (212)
T ss_dssp HHHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHTCE-E--CCCCCSSS-------------------CGGGGGG
T ss_pred HHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhCCC-e--eeEEeccc-------------------hhhhccc
Confidence 34445555543 1249999999999999998888876432 1 22211100 0112232
Q ss_pred cCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeC-CCCceEeecCeEEEEeecCCCCCCCCCCccccccccc
Q psy568 482 QLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRP-ADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLRHVP 560 (1614)
Q Consensus 482 ~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~-~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r~f~ 560 (1614)
...+ ++++||++.+ .....-+.+|.++|...+-.. +-..-..+...-+|.|+|.+-. ....-+++.+|..
T Consensus 102 ~~~k--IiiLDEad~~-----~~~~~d~~lrn~ldG~~~~iD~Khr~~~~~~~~PlIITtN~~~~--~~~~~~~L~SRi~ 172 (212)
T 1tue_A 102 TDTK--VAMLDDATTT-----CWTYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPA--KDNRWPYLESRIT 172 (212)
T ss_dssp TTCS--SEEEEEECHH-----HHHHHHHHCHHHHHTCCEEEC----CCEEECCCCEEEEESSCTT--SSSSCHHHHTSCE
T ss_pred CCCC--EEEEECCCch-----hHHHHHHHHHHHhCCCcccHHHhhcCccccCCCCEEEecCCCcc--cccchhhhhhhEE
Confidence 2223 5567999852 112234688999987654332 1122233344567889997541 1222367888998
Q ss_pred EEEecCCC
Q psy568 561 VIYVDYPG 568 (1614)
Q Consensus 561 ~i~i~~p~ 568 (1614)
++.++.|-
T Consensus 173 ~f~F~~~~ 180 (212)
T 1tue_A 173 VFEFPNAF 180 (212)
T ss_dssp EEECCSCC
T ss_pred EEEcCCCC
Confidence 88888554
No 113
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.37 E-value=0.0003 Score=76.60 Aligned_cols=47 Identities=26% Similarity=0.289 Sum_probs=33.7
Q ss_pred HHHHHHHHHhcC------CCEEEecCCCCchHHHHHHHHhcCC--CCceEEEEcc
Q psy568 405 HESLLYTWLAEH------KPLVLCGPPGSGKTMTLLSALRALP--DMEVVSLNFS 451 (1614)
Q Consensus 405 ~~~ll~~~l~~~------~~vLL~Gp~GtGKT~lv~~~~~~l~--~~~~~~i~~s 451 (1614)
....+..++... .+++|+||+|||||++++.++..+. +..+..++++
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~ 91 (202)
T 2w58_A 37 AIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVP 91 (202)
T ss_dssp HHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHH
T ss_pred HHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhH
Confidence 344445555543 8999999999999999988887552 4556666664
No 114
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.37 E-value=0.00086 Score=81.04 Aligned_cols=143 Identities=16% Similarity=0.161 Sum_probs=80.0
Q ss_pred cCCccEEEeecCCCChHHHHHHHHHHc---------CCeEEEEEecCCCChhcHHHH-------------------HHHH
Q psy568 755 QPQGHLLLIGVSGAGKTTLSRFVAFMN---------GLSVFQIRAHNKYTGADFDED-------------------LRTV 806 (1614)
Q Consensus 755 ~p~gh~LLvG~~GsGKtsl~rlaA~~~---------~~~~~~i~~~~~~~~~df~~~-------------------lk~~ 806 (1614)
.+.++++|+||+|+|||++++.++... +..++.++.....+..++... +..+
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l 121 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERL 121 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHH
Confidence 345679999999999999999998876 778888886655443332222 1112
Q ss_pred HHHhccCCCcEEEEEcCCcccccc--hHHHHHHhhccCCCCCCCChhhHHHHHHHhHHHHHHcCCCCCCHHHHHHHHHHH
Q psy568 807 LRRSGCKNEKIAFLLDESNVLESG--FLERMNTLLANGEIPGLFEGDEYTTLMTQCKEGAQREGLMLDSNEELYKWFTQQ 884 (1614)
Q Consensus 807 l~~ag~~~~~~v~ll~d~~i~~~~--~le~in~lL~~G~v~~Lf~~eE~~~i~~~~~~~~~~~~~~~~s~~~l~~~f~~r 884 (1614)
.......+++.++++||-+-.... ..+.+..++.. . ... +
T Consensus 122 ~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~----------------------~--~~~--------------~ 163 (387)
T 2v1u_A 122 VKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRI----------------------N--QEL--------------G 163 (387)
T ss_dssp HHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHG----------------------G--GCC---------------
T ss_pred HHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhc----------------------h--hhc--------------C
Confidence 222222345667777765432111 11111111100 0 000 0
Q ss_pred HhhcceEEEEECCCChhhHHHhhhCccccccc--eecccCCCcHHHHHHHHHHhhcc
Q psy568 885 VMKNLHVVFTMNPSSEGLKDRAATSPALFNRC--VLNWFGDWSDTALYQVAKEFTSK 939 (1614)
Q Consensus 885 v~~nlhivl~~sp~~~~~r~~~~~~PaL~~~~--~i~wf~~W~~eaL~~va~~~l~~ 939 (1614)
+..++.+|++-+... +.. ...|.+.+++ .+.-|.+++.+.+..+..+.+..
T Consensus 164 ~~~~~~~I~~t~~~~--~~~--~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~ 216 (387)
T 2v1u_A 164 DRVWVSLVGITNSLG--FVE--NLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEE 216 (387)
T ss_dssp ----CEEEEECSCST--TSS--SSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHH
T ss_pred CCceEEEEEEECCCc--hHh--hhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHh
Confidence 034667777665432 111 2356666676 56789999999999988877753
No 115
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=97.36 E-value=0.00017 Score=86.54 Aligned_cols=84 Identities=19% Similarity=0.325 Sum_probs=56.9
Q ss_pred CCccEEEeecCCCChHHHHHHHHHHcCCeEEEEEecCCCChhcH-----HHHHHHHHHHhcc---CCCcEEEEEcCCccc
Q psy568 756 PQGHLLLIGVSGAGKTTLSRFVAFMNGLSVFQIRAHNKYTGADF-----DEDLRTVLRRSGC---KNEKIAFLLDESNVL 827 (1614)
Q Consensus 756 p~gh~LLvG~~GsGKtsl~rlaA~~~~~~~~~i~~~~~~~~~df-----~~~lk~~l~~ag~---~~~~~v~ll~d~~i~ 827 (1614)
+.+|+||+||+|+|||++++.+|..++.+++.++.+.... ..| .+.++.++..+.. ...+.++++|+-+-.
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l 128 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTE-AGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKI 128 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTT-CHHHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcc-cccccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhh
Confidence 6678999999999999999999999999999998764321 122 2233444444321 124668888886544
Q ss_pred ccc--------------hHHHHHHhhc
Q psy568 828 ESG--------------FLERMNTLLA 840 (1614)
Q Consensus 828 ~~~--------------~le~in~lL~ 840 (1614)
.+. +...+..+|.
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~Ll~~le 155 (363)
T 3hws_A 129 SRKSDNPSITRDVSGEGVQQALLKLIE 155 (363)
T ss_dssp CCCSSCC---CHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccchHHHHHHHHHHhc
Confidence 333 5666666666
No 116
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.36 E-value=0.00029 Score=75.15 Aligned_cols=56 Identities=23% Similarity=0.345 Sum_probs=37.1
Q ss_pred eeee-CcchhhHHHHHHHHH-----hcCCCEEEecCCCCchHHHHHHHHhcCC---CCceEEEEc
Q psy568 395 VVVP-TLDTVRHESLLYTWL-----AEHKPLVLCGPPGSGKTMTLLSALRALP---DMEVVSLNF 450 (1614)
Q Consensus 395 ~~vp-T~~t~r~~~ll~~~l-----~~~~~vLL~Gp~GtGKT~lv~~~~~~l~---~~~~~~i~~ 450 (1614)
.|+| ++........+..++ ..|.+++|+||+|||||++++.++..+. +..+..+++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~ 75 (180)
T 3ec2_A 11 TYHPKNVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDT 75 (180)
T ss_dssp SCCCCSHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEH
T ss_pred cccCCCHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEH
Confidence 3444 334444444444444 3578999999999999999998887652 444555544
No 117
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.36 E-value=0.00017 Score=86.80 Aligned_cols=70 Identities=23% Similarity=0.335 Sum_probs=52.1
Q ss_pred hccCCccEEEeecCCCChHHHHHHHHHHcCCeEEEEEecCCCC--hhcHHHHHHHHHHHhccCCCcEEEEEcCC
Q psy568 753 FRQPQGHLLLIGVSGAGKTTLSRFVAFMNGLSVFQIRAHNKYT--GADFDEDLRTVLRRSGCKNEKIAFLLDES 824 (1614)
Q Consensus 753 l~~p~gh~LLvG~~GsGKtsl~rlaA~~~~~~~~~i~~~~~~~--~~df~~~lk~~l~~ag~~~~~~v~ll~d~ 824 (1614)
+..|+| +||.||||||||++++.+|.-+|.+++.+..+.-.+ ..+-...++.++..|. ...|+++++|+-
T Consensus 212 ~~~prG-vLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~~vGese~~ir~lF~~A~-~~aP~IifiDEi 283 (434)
T 4b4t_M 212 IRAPKG-ALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGEGAKLVRDAFALAK-EKAPTIIFIDEL 283 (434)
T ss_dssp CCCCCE-EEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSSCSSHHHHHHHHHHHHHH-HHCSEEEEEECT
T ss_pred CCCCCe-eEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhcccchHHHHHHHHHHHHH-hcCCeEEeecch
Confidence 445676 999999999999999999999999999998654432 1222344666666553 456888888874
No 118
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.36 E-value=0.00038 Score=79.76 Aligned_cols=70 Identities=20% Similarity=0.292 Sum_probs=51.6
Q ss_pred ccCCccEEEeecCCCChHHHHHHHHHHcCCeEEEEEecCCC---ChhcHHHHHHHHHHHhccCCCcEEEEEcCC
Q psy568 754 RQPQGHLLLIGVSGAGKTTLSRFVAFMNGLSVFQIRAHNKY---TGADFDEDLRTVLRRSGCKNEKIAFLLDES 824 (1614)
Q Consensus 754 ~~p~gh~LLvG~~GsGKtsl~rlaA~~~~~~~~~i~~~~~~---~~~df~~~lk~~l~~ag~~~~~~v~ll~d~ 824 (1614)
..+.+++||+||+|+|||++++.+|...+.+++.+.....+ ...+..+.++.++..+. ...+.++++||-
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~vl~iDEi 133 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAY-KSQLSCVVVDDI 133 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHHHHHHHHHHHHHH-TSSEEEEEECCH
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHHHHHHHHHHHHHH-hcCCcEEEEECh
Confidence 34566899999999999999999999999999988765432 22334455666666553 355778888773
No 119
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.33 E-value=0.00023 Score=84.61 Aligned_cols=71 Identities=25% Similarity=0.415 Sum_probs=53.1
Q ss_pred hccCCccEEEeecCCCChHHHHHHHHHHcCCeEEEEEecCCCC--hhcHHHHHHHHHHHhccCCCcEEEEEcCCc
Q psy568 753 FRQPQGHLLLIGVSGAGKTTLSRFVAFMNGLSVFQIRAHNKYT--GADFDEDLRTVLRRSGCKNEKIAFLLDESN 825 (1614)
Q Consensus 753 l~~p~gh~LLvG~~GsGKtsl~rlaA~~~~~~~~~i~~~~~~~--~~df~~~lk~~l~~ag~~~~~~v~ll~d~~ 825 (1614)
+..|+| +||.||||||||++++.+|.-++.+++.+..+.-.+ ..+-..-++.++..|. ...|+++++||.+
T Consensus 213 i~~prG-vLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk~vGesek~ir~lF~~Ar-~~aP~IIfiDEiD 285 (437)
T 4b4t_I 213 IKPPKG-VILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAG-ENAPSIVFIDEID 285 (437)
T ss_dssp CCCCSE-EEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCSSSSHHHHHHHHHHHHHH-HTCSEEEEEEEES
T ss_pred CCCCCC-CceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhccCchHHHHHHHHHHHHH-hcCCcEEEEehhh
Confidence 345676 999999999999999999999999999998654432 1222344666666663 5668888888753
No 120
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.33 E-value=0.00052 Score=79.20 Aligned_cols=68 Identities=19% Similarity=0.291 Sum_probs=49.9
Q ss_pred CCccEEEeecCCCChHHHHHHHHHHcCCeEEEEEecCCCC--hhcHHHHHHHHHHHhccCCCcEEEEEcCC
Q psy568 756 PQGHLLLIGVSGAGKTTLSRFVAFMNGLSVFQIRAHNKYT--GADFDEDLRTVLRRSGCKNEKIAFLLDES 824 (1614)
Q Consensus 756 p~gh~LLvG~~GsGKtsl~rlaA~~~~~~~~~i~~~~~~~--~~df~~~lk~~l~~ag~~~~~~v~ll~d~ 824 (1614)
+..++||.||+|+|||++++.+|...+.+++.+......+ ..+....++.++..+. ...|.++++||-
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~vl~iDEi 119 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAK-EKAPSIIFIDEI 119 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCCCSTTHHHHHHHHHHHHHH-HTCSEEEEEETT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHHhccchHHHHHHHHHHHHH-HcCCeEEEEECH
Confidence 4456999999999999999999999999999988654432 2333444555555443 345778888874
No 121
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.33 E-value=0.00097 Score=79.53 Aligned_cols=69 Identities=23% Similarity=0.388 Sum_probs=51.0
Q ss_pred cCCccEEEeecCCCChHHHHHHHHHHcCCeEEEEEecCCCC--hhcHHHHHHHHHHHhccCCCcEEEEEcCC
Q psy568 755 QPQGHLLLIGVSGAGKTTLSRFVAFMNGLSVFQIRAHNKYT--GADFDEDLRTVLRRSGCKNEKIAFLLDES 824 (1614)
Q Consensus 755 ~p~gh~LLvG~~GsGKtsl~rlaA~~~~~~~~~i~~~~~~~--~~df~~~lk~~l~~ag~~~~~~v~ll~d~ 824 (1614)
.+..++||+|++|+|||++++.+|..++.+++.++.....+ ..+....++.++..+. ...+.++++||-
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~~~g~~~~~~~~~~~~a~-~~~~~vl~iDEi 185 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVAR-CQQPAVIFIDEI 185 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCSSTTHHHHHHHHHHHHHH-HTCSEEEEEETH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhccccchHHHHHHHHHHHHH-hcCCeEEEEeCc
Confidence 44556999999999999999999999999999998765433 2334445566655553 345778888873
No 122
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=97.31 E-value=0.00056 Score=80.30 Aligned_cols=132 Identities=18% Similarity=0.196 Sum_probs=87.4
Q ss_pred ccEEEeecCCCChHHHHHHHHHHc-----CCeEEEEEecCCCChhcHHHHHHHHHHHhccC-CCcEEEEEcCCcccccch
Q psy568 758 GHLLLIGVSGAGKTTLSRFVAFMN-----GLSVFQIRAHNKYTGADFDEDLRTVLRRSGCK-NEKIAFLLDESNVLESGF 831 (1614)
Q Consensus 758 gh~LLvG~~GsGKtsl~rlaA~~~-----~~~~~~i~~~~~~~~~df~~~lk~~l~~ag~~-~~~~v~ll~d~~i~~~~~ 831 (1614)
.|++|.||+|+|||++++.+|... +..+..++.....+..+.++.++......... +++.++++||.+...+..
T Consensus 39 ~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~ 118 (319)
T 2chq_A 39 PHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADA 118 (319)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCTTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHH
T ss_pred CeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccChHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHH
Confidence 469999999999999999888764 34567777766555555555555544333343 567888898866544322
Q ss_pred HHHHHHhhccCCCCCCCChhhHHHHHHHhHHHHHHcCCCCCCHHHHHHHHHHHHhhcceEEEEECCCChhhHHHhhhCcc
Q psy568 832 LERMNTLLANGEIPGLFEGDEYTTLMTQCKEGAQREGLMLDSNEELYKWFTQQVMKNLHVVFTMNPSSEGLKDRAATSPA 911 (1614)
Q Consensus 832 le~in~lL~~G~v~~Lf~~eE~~~i~~~~~~~~~~~~~~~~s~~~l~~~f~~rv~~nlhivl~~sp~~~~~r~~~~~~Pa 911 (1614)
.+.+..++. ....+..+|++.++.. ...|+
T Consensus 119 ~~~L~~~le-------------------------------------------~~~~~~~~i~~~~~~~-------~l~~~ 148 (319)
T 2chq_A 119 QAALRRTME-------------------------------------------MYSKSCRFILSCNYVS-------RIIEP 148 (319)
T ss_dssp HHTTGGGTS-------------------------------------------SSSSSEEEEEEESCGG-------GSCHH
T ss_pred HHHHHHHHH-------------------------------------------hcCCCCeEEEEeCChh-------hcchH
Confidence 211111110 0113677777766532 34788
Q ss_pred ccccceecccCCCcHHHHHHHHHHhhcc
Q psy568 912 LFNRCVLNWFGDWSDTALYQVAKEFTSK 939 (1614)
Q Consensus 912 L~~~~~i~wf~~W~~eaL~~va~~~l~~ 939 (1614)
+.++|.+.-|.+.+.+.+..+....+..
T Consensus 149 l~sr~~~i~~~~~~~~~~~~~l~~~~~~ 176 (319)
T 2chq_A 149 IQSRCAVFRFKPVPKEAMKKRLLEICEK 176 (319)
T ss_dssp HHTTCEEEECCCCCHHHHHHHHHHHHHT
T ss_pred HHhhCeEEEecCCCHHHHHHHHHHHHHH
Confidence 9999999999999999988887776653
No 123
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=97.30 E-value=0.0007 Score=79.77 Aligned_cols=131 Identities=19% Similarity=0.238 Sum_probs=81.6
Q ss_pred ccEEEeecCCCChHHHHHHHHHHcC-----CeEEEEEecCCCChhcHHHHHHHHHHHhccC-CCcEEEEEcCCcccccch
Q psy568 758 GHLLLIGVSGAGKTTLSRFVAFMNG-----LSVFQIRAHNKYTGADFDEDLRTVLRRSGCK-NEKIAFLLDESNVLESGF 831 (1614)
Q Consensus 758 gh~LLvG~~GsGKtsl~rlaA~~~~-----~~~~~i~~~~~~~~~df~~~lk~~l~~ag~~-~~~~v~ll~d~~i~~~~~ 831 (1614)
+|++|.||+|+|||++++.+|...+ ..+..++.....+....++.++......... +++.++++||.+...+..
T Consensus 47 ~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~ 126 (327)
T 1iqp_A 47 PHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQDA 126 (327)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHHTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCchHHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCHHH
Confidence 4799999999999999998887642 2366665443323334444444443322232 567888898865543322
Q ss_pred HHHHHHhhccCCCCCCCChhhHHHHHHHhHHHHHHcCCCCCCHHHHHHHHHHHHhhcceEEEEECCCChhhHHHhhhCcc
Q psy568 832 LERMNTLLANGEIPGLFEGDEYTTLMTQCKEGAQREGLMLDSNEELYKWFTQQVMKNLHVVFTMNPSSEGLKDRAATSPA 911 (1614)
Q Consensus 832 le~in~lL~~G~v~~Lf~~eE~~~i~~~~~~~~~~~~~~~~s~~~l~~~f~~rv~~nlhivl~~sp~~~~~r~~~~~~Pa 911 (1614)
.+.+..++ +.-..+..++++.+... ...|+
T Consensus 127 ~~~L~~~l-------------------------------------------e~~~~~~~~i~~~~~~~-------~l~~~ 156 (327)
T 1iqp_A 127 QQALRRTM-------------------------------------------EMFSSNVRFILSCNYSS-------KIIEP 156 (327)
T ss_dssp HHHHHHHH-------------------------------------------HHTTTTEEEEEEESCGG-------GSCHH
T ss_pred HHHHHHHH-------------------------------------------HhcCCCCeEEEEeCCcc-------ccCHH
Confidence 22111111 11123667887765432 24678
Q ss_pred ccccceecccCCCcHHHHHHHHHHhhc
Q psy568 912 LFNRCVLNWFGDWSDTALYQVAKEFTS 938 (1614)
Q Consensus 912 L~~~~~i~wf~~W~~eaL~~va~~~l~ 938 (1614)
+.++|.+.-|.+.+.+.+..+....+.
T Consensus 157 l~sr~~~~~~~~l~~~~~~~~l~~~~~ 183 (327)
T 1iqp_A 157 IQSRCAIFRFRPLRDEDIAKRLRYIAE 183 (327)
T ss_dssp HHHTEEEEECCCCCHHHHHHHHHHHHH
T ss_pred HHhhCcEEEecCCCHHHHHHHHHHHHH
Confidence 888898888999999998887776654
No 124
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.30 E-value=0.0004 Score=79.26 Aligned_cols=166 Identities=16% Similarity=0.233 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHhccCCccEEEeecCCCChHHHHHHHHHHcC---CeEEEEEecCCCChhcHHHHHH----HHHHHh---
Q psy568 741 EVLDHVLRIDRIFRQPQGHLLLIGVSGAGKTTLSRFVAFMNG---LSVFQIRAHNKYTGADFDEDLR----TVLRRS--- 810 (1614)
Q Consensus 741 ~~i~hi~ri~Ril~~p~gh~LLvG~~GsGKtsl~rlaA~~~~---~~~~~i~~~~~~~~~df~~~lk----~~l~~a--- 810 (1614)
.++..+.+..+.+....+++||+|++|+|||++++.++...+ .+++.++++.. ....+...+. ..+..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~-~~~~~~~~l~g~~~~~~~g~~~~ 91 (265)
T 2bjv_A 13 NSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAAL-NENLLDSELFGHEAGAFTGAQKR 91 (265)
T ss_dssp HHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGS-CHHHHHHHHHCCC---------C
T ss_pred HHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCC-ChhHHHHHhcCCccccccccccc
Confidence 334444433333334457899999999999999999998764 67888877643 2111111110 001000
Q ss_pred --cc--CCCcEEEEEcCCcccccchHHHHHHhhccCCCCCCCChhhHHHHHHHhHHHHHHcCCCCCCHHHHHHHHHHHHh
Q psy568 811 --GC--KNEKIAFLLDESNVLESGFLERMNTLLANGEIPGLFEGDEYTTLMTQCKEGAQREGLMLDSNEELYKWFTQQVM 886 (1614)
Q Consensus 811 --g~--~~~~~v~ll~d~~i~~~~~le~in~lL~~G~v~~Lf~~eE~~~i~~~~~~~~~~~~~~~~s~~~l~~~f~~rv~ 886 (1614)
|. ...+.++++||-+...+...+.+..+|..|.+..+ |. + ....
T Consensus 92 ~~~~l~~a~~~~l~lDEi~~l~~~~q~~Ll~~l~~~~~~~~--------------------g~---~---------~~~~ 139 (265)
T 2bjv_A 92 HPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYGELERV--------------------GG---S---------QPLQ 139 (265)
T ss_dssp CCCHHHHTTTSEEEEESGGGSCHHHHHHHHHHHHHCEECCC--------------------CC--------------CEE
T ss_pred ccchhhhcCCcEEEEechHhcCHHHHHHHHHHHHhCCeecC--------------------CC---c---------cccc
Confidence 00 01235788898877777666666666666543211 10 0 0123
Q ss_pred hcceEEEEECCCChhhHHHhhhCcccccccee--cccCCCcH--HHHHHHHHHhhcc
Q psy568 887 KNLHVVFTMNPSSEGLKDRAATSPALFNRCVL--NWFGDWSD--TALYQVAKEFTSK 939 (1614)
Q Consensus 887 ~nlhivl~~sp~~~~~r~~~~~~PaL~~~~~i--~wf~~W~~--eaL~~va~~~l~~ 939 (1614)
.++.+|++.++.-...-..-+..|.|++++.. .-+.+..+ +.+..++.+|+..
T Consensus 140 ~~~~iI~atn~~~~~~~~~~~~~~~L~~Rl~~~~i~lp~L~~R~~di~~l~~~~l~~ 196 (265)
T 2bjv_A 140 VNVRLVCATNADLPAMVNEGTFRADLLDALAFDVVQLPPLRERESDIMLMAEYFAIQ 196 (265)
T ss_dssp CCCEEEEEESSCHHHHHHHTSSCHHHHHHHCSEEEECCCGGGCHHHHHHHHHHHHHH
T ss_pred CCeEEEEecCcCHHHHHHcCCccHHHHHhhcCcEEeCCChhhhhHHHHHHHHHHHHH
Confidence 47788888887533221111223667766632 34555544 5677777777654
No 125
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.30 E-value=0.00077 Score=80.42 Aligned_cols=131 Identities=13% Similarity=0.140 Sum_probs=82.1
Q ss_pred ccEEEeecCCCChHHHHHHHHHHcC------CeEEEEEecCCCChhcHHHHHHHHHHHh----------cc-CCCcEEEE
Q psy568 758 GHLLLIGVSGAGKTTLSRFVAFMNG------LSVFQIRAHNKYTGADFDEDLRTVLRRS----------GC-KNEKIAFL 820 (1614)
Q Consensus 758 gh~LLvG~~GsGKtsl~rlaA~~~~------~~~~~i~~~~~~~~~df~~~lk~~l~~a----------g~-~~~~~v~l 820 (1614)
+|++|.||+|+|||++++.+|...+ ..+..++.....+...+++.++...... +. .+.+.+++
T Consensus 59 ~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vli 138 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIII 138 (353)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHHHHHHHHHhhhcccccchhhcccCCCCCceEEE
Confidence 5799999999999999998887643 3566776655445555544444332211 11 23456888
Q ss_pred EcCCcccccchHHHHHHhhccCCCCCCCChhhHHHHHHHhHHHHHHcCCCCCCHHHHHHHHHHHHhhcceEEEEECCCCh
Q psy568 821 LDESNVLESGFLERMNTLLANGEIPGLFEGDEYTTLMTQCKEGAQREGLMLDSNEELYKWFTQQVMKNLHVVFTMNPSSE 900 (1614)
Q Consensus 821 l~d~~i~~~~~le~in~lL~~G~v~~Lf~~eE~~~i~~~~~~~~~~~~~~~~s~~~l~~~f~~rv~~nlhivl~~sp~~~ 900 (1614)
+||.+-.++...+.+..++ +.-..+..++++.++..
T Consensus 139 iDE~~~l~~~~~~~Ll~~l-------------------------------------------e~~~~~~~~il~~~~~~- 174 (353)
T 1sxj_D 139 LDEADSMTADAQSALRRTM-------------------------------------------ETYSGVTRFCLICNYVT- 174 (353)
T ss_dssp ETTGGGSCHHHHHHHHHHH-------------------------------------------HHTTTTEEEEEEESCGG-
T ss_pred EECCCccCHHHHHHHHHHH-------------------------------------------HhcCCCceEEEEeCchh-
Confidence 8876544432221111111 11123566777765432
Q ss_pred hhHHHhhhCccccccceecccCCCcHHHHHHHHHHhhc
Q psy568 901 GLKDRAATSPALFNRCVLNWFGDWSDTALYQVAKEFTS 938 (1614)
Q Consensus 901 ~~r~~~~~~PaL~~~~~i~wf~~W~~eaL~~va~~~l~ 938 (1614)
...|++.++|.+.-|.+.+.+.+..+..+.+.
T Consensus 175 ------~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~~~ 206 (353)
T 1sxj_D 175 ------RIIDPLASQCSKFRFKALDASNAIDRLRFISE 206 (353)
T ss_dssp ------GSCHHHHHHSEEEECCCCCHHHHHHHHHHHHH
T ss_pred ------hCcchhhccCceEEeCCCCHHHHHHHHHHHHH
Confidence 35688888998888999999998888777654
No 126
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=97.27 E-value=0.0013 Score=77.50 Aligned_cols=143 Identities=19% Similarity=0.221 Sum_probs=90.0
Q ss_pred CCccEEEeecCCCChHHHHHHHHHHcCCeEEEEEecCCCChhcHHHHHHHHHHHhccCCCcEEEEEcCCcccccchHHHH
Q psy568 756 PQGHLLLIGVSGAGKTTLSRFVAFMNGLSVFQIRAHNKYTGADFDEDLRTVLRRSGCKNEKIAFLLDESNVLESGFLERM 835 (1614)
Q Consensus 756 p~gh~LLvG~~GsGKtsl~rlaA~~~~~~~~~i~~~~~~~~~df~~~lk~~l~~ag~~~~~~v~ll~d~~i~~~~~le~i 835 (1614)
+..+++|.|++|+|||++++.++...+.++..++........+ +...+..+ ...+.++++||-+-..+...+.+
T Consensus 37 ~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~----l~~~l~~~--~~~~~~l~lDEi~~l~~~~~~~L 110 (324)
T 1hqc_A 37 PLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPGD----LAAILANS--LEEGDILFIDEIHRLSRQAEEHL 110 (324)
T ss_dssp CCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCSHHH----HHHHHTTT--CCTTCEEEETTTTSCCHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCChHH----HHHHHHHh--ccCCCEEEEECCcccccchHHHH
Confidence 4467999999999999999999999999988877654433333 33333321 23566888898776665555555
Q ss_pred HHhhccCCCCCCCChhhHHHHHHHhHHHHHHcCCCCCCHHHHHHHHHHHHh---hcceEEEEECCCChhhHHHhhhCccc
Q psy568 836 NTLLANGEIPGLFEGDEYTTLMTQCKEGAQREGLMLDSNEELYKWFTQQVM---KNLHVVFTMNPSSEGLKDRAATSPAL 912 (1614)
Q Consensus 836 n~lL~~G~v~~Lf~~eE~~~i~~~~~~~~~~~~~~~~s~~~l~~~f~~rv~---~nlhivl~~sp~~~~~r~~~~~~PaL 912 (1614)
..++..+.+.-+.+... ... .++ .++.++.+.+..+ . ..|+|
T Consensus 111 ~~~l~~~~~~~v~~~~~--------------------~~~--------~~~~~~~~~~~i~~t~~~~-~------~~~~l 155 (324)
T 1hqc_A 111 YPAMEDFVMDIVIGQGP--------------------AAR--------TIRLELPRFTLIGATTRPG-L------ITAPL 155 (324)
T ss_dssp HHHHHHSEEEECCSSSS--------------------SCC--------CEEEECCCCEEEEEESCCS-S------CSCST
T ss_pred HHHHHhhhhHHhccccc--------------------ccc--------ccccCCCCEEEEEeCCCcc-c------CCHHH
Confidence 55554433211111000 000 011 2456676666543 2 34778
Q ss_pred cccc-eecccCCCcHHHHHHHHHHhhcc
Q psy568 913 FNRC-VLNWFGDWSDTALYQVAKEFTSK 939 (1614)
Q Consensus 913 ~~~~-~i~wf~~W~~eaL~~va~~~l~~ 939 (1614)
.++| .+..+.+.+.+.+..+..+++..
T Consensus 156 ~~R~~~~i~l~~~~~~e~~~~l~~~~~~ 183 (324)
T 1hqc_A 156 LSRFGIVEHLEYYTPEELAQGVMRDARL 183 (324)
T ss_dssp TTTCSCEEECCCCCHHHHHHHHHHHHHT
T ss_pred HhcccEEEecCCCCHHHHHHHHHHHHHh
Confidence 8888 47788999999988888777654
No 127
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.25 E-value=0.00052 Score=80.23 Aligned_cols=73 Identities=22% Similarity=0.381 Sum_probs=48.4
Q ss_pred CCccEEEeecCCCChHHHHHHHHHHcCCeEEEEEecCCCC----hhcHHHHHHHHHHHhc--c--CCCcEEEEEcCCccc
Q psy568 756 PQGHLLLIGVSGAGKTTLSRFVAFMNGLSVFQIRAHNKYT----GADFDEDLRTVLRRSG--C--KNEKIAFLLDESNVL 827 (1614)
Q Consensus 756 p~gh~LLvG~~GsGKtsl~rlaA~~~~~~~~~i~~~~~~~----~~df~~~lk~~l~~ag--~--~~~~~v~ll~d~~i~ 827 (1614)
+..++||+|++|+|||++++.+|...+.+++.++.+...+ ..+....++.++..+. . .+.+.++++||-+-.
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l 128 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKI 128 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGG
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhc
Confidence 4567999999999999999999999999999998765322 2222222333333220 0 023568888886554
Q ss_pred c
Q psy568 828 E 828 (1614)
Q Consensus 828 ~ 828 (1614)
.
T Consensus 129 ~ 129 (310)
T 1ofh_A 129 C 129 (310)
T ss_dssp S
T ss_pred C
Confidence 3
No 128
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.24 E-value=0.0047 Score=72.38 Aligned_cols=70 Identities=21% Similarity=0.367 Sum_probs=51.1
Q ss_pred cCCccEEEeecCCCChHHHHHHHHHHc-CCeEEEEEecCCCC--hhcHHHHHHHHHHHhccCCCcEEEEEcCCc
Q psy568 755 QPQGHLLLIGVSGAGKTTLSRFVAFMN-GLSVFQIRAHNKYT--GADFDEDLRTVLRRSGCKNEKIAFLLDESN 825 (1614)
Q Consensus 755 ~p~gh~LLvG~~GsGKtsl~rlaA~~~-~~~~~~i~~~~~~~--~~df~~~lk~~l~~ag~~~~~~v~ll~d~~ 825 (1614)
.|..++||.||+|+|||++++.+|..+ +.+++.++.....+ ..+....++.++..+. ...+.++++||-+
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~~~~g~~~~~~~~lf~~a~-~~~~~vl~iDEid 115 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLAR-ENKPSIIFIDEID 115 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCCSSCCSCHHHHHHHHHHHH-HTSSEEEEEETTT
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHhhhhhHHHHHHHHHHHHHH-hcCCcEEEeecHH
Confidence 455569999999999999999999887 88999988654332 1233445666666553 3567888888754
No 129
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.23 E-value=0.00021 Score=84.56 Aligned_cols=135 Identities=14% Similarity=0.149 Sum_probs=87.4
Q ss_pred HHHHHhccEEEEecCCCCChhhHHHHHHHHHHHhhcCCceEEEeCCCCCCcCccccccc--CCCCc--cccchHHHHHHH
Q psy568 37 YQISNLNHGLMMVGPSGSGKSTAWKVLLKALERYEGVEGVAHIIDPKAISKEALYGVLD--PNTRE--WTDGLFTHILRR 112 (1614)
Q Consensus 37 ~e~~~~r~gVmlvG~~gsGKTt~~~~L~~al~~~~~~~~~~~~inPkais~~eLyG~~d--~~t~e--W~DGvls~i~r~ 112 (1614)
...+...++|+|+||||+|||++.+.+++.+. .+......+| .++..++.|... +.++. |..|.+
T Consensus 40 ~~~l~~~~~vll~G~pGtGKT~la~~la~~~~----~~~~~i~~~~-~~~~~~l~g~~~~~~~~~~~~~~~g~l------ 108 (331)
T 2r44_A 40 LIGICTGGHILLEGVPGLAKTLSVNTLAKTMD----LDFHRIQFTP-DLLPSDLIGTMIYNQHKGNFEVKKGPV------ 108 (331)
T ss_dssp HHHHHHTCCEEEESCCCHHHHHHHHHHHHHTT----CCEEEEECCT-TCCHHHHHEEEEEETTTTEEEEEECTT------
T ss_pred HHHHHcCCeEEEECCCCCcHHHHHHHHHHHhC----CCeEEEecCC-CCChhhcCCceeecCCCCceEeccCcc------
Confidence 33455688999999999999999999988752 2222112222 234456666543 22222 344433
Q ss_pred HHhhhcCCCCCceEEEEcc--CCChhhhhhhhhhhcCCCccccCCCceeeCCCCceEEEEecccc-----ccCccccccc
Q psy568 113 IIDNVRGEISKRQWIIFDG--DVDPEWVENLNSVLDDNKLLTLPNGERLSLPPNIRIMFEVQDLK-----YATLATVSRC 185 (1614)
Q Consensus 113 ~~~~~~~~~~~~~WivfDG--~vd~~WiE~lnsvLDdnk~L~L~nGeri~l~~~~~~iFEv~dL~-----~ASPAtVSRc 185 (1614)
...++++|. -.++.-...|..+|++.. +++ .|.....+..+.++.-..... ..+||..+||
T Consensus 109 ----------~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~-~~~-~g~~~~~~~~~~viat~np~~~~~~~~l~~~l~~Rf 176 (331)
T 2r44_A 109 ----------FSNFILADEVNRSPAKVQSALLECMQEKQ-VTI-GDTTYPLDNPFLVLATQNPVEQEGTYPLPEAQVDRF 176 (331)
T ss_dssp ----------CSSEEEEETGGGSCHHHHHHHHHHHHHSE-EEE-TTEEEECCSSCEEEEEECTTCCSCCCCCCHHHHTTS
T ss_pred ----------cccEEEEEccccCCHHHHHHHHHHHhcCc-eee-CCEEEECCCCEEEEEecCCCcccCcccCCHHHHhhe
Confidence 126899995 456666667777777654 344 688888888888775444222 2689999999
Q ss_pred ee-EEecCcc
Q psy568 186 GM-IWFSEDV 194 (1614)
Q Consensus 186 gm-v~~~~~~ 194 (1614)
++ +.+++-+
T Consensus 177 ~~~i~i~~p~ 186 (331)
T 2r44_A 177 MMKIHLTYLD 186 (331)
T ss_dssp SEEEECCCCC
T ss_pred eEEEEcCCCC
Confidence 97 7777654
No 130
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.23 E-value=0.00055 Score=79.71 Aligned_cols=46 Identities=26% Similarity=0.390 Sum_probs=32.8
Q ss_pred HHHHHHHHhc-----CCCEEEecCCCCchHHHHHHHHhcCC---CCceEEEEcc
Q psy568 406 ESLLYTWLAE-----HKPLVLCGPPGSGKTMTLLSALRALP---DMEVVSLNFS 451 (1614)
Q Consensus 406 ~~ll~~~l~~-----~~~vLL~Gp~GtGKT~lv~~~~~~l~---~~~~~~i~~s 451 (1614)
...+..++.. +.+++|+||||||||+++..++..+. +..+..++++
T Consensus 137 ~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~ 190 (308)
T 2qgz_A 137 FSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFP 190 (308)
T ss_dssp HHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHH
T ss_pred HHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHH
Confidence 3344445553 68999999999999999988886543 4556666654
No 131
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.20 E-value=0.00078 Score=68.96 Aligned_cols=90 Identities=14% Similarity=0.165 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHhccCCccEEEeecCCCChHHHHHHHHHHc---CCeEEEEEecCCCChhcHHHHHHHHHHHhccCCCcE
Q psy568 741 EVLDHVLRIDRIFRQPQGHLLLIGVSGAGKTTLSRFVAFMN---GLSVFQIRAHNKYTGADFDEDLRTVLRRSGCKNEKI 817 (1614)
Q Consensus 741 ~~i~hi~ri~Ril~~p~gh~LLvG~~GsGKtsl~rlaA~~~---~~~~~~i~~~~~~~~~df~~~lk~~l~~ag~~~~~~ 817 (1614)
.++..+.+..+.+.....|+||+|++|+|||++++.++... +.+++ ++.....+..+ +...+..+ .+.
T Consensus 8 ~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~~~----~~~~~~~a----~~g 78 (145)
T 3n70_A 8 EWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNAPQ----LNDFIALA----QGG 78 (145)
T ss_dssp HHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTSSC----HHHHHHHH----TTS
T ss_pred HHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcchh----hhcHHHHc----CCc
Confidence 34444444444445566789999999999999999999876 67888 88765544322 23334333 124
Q ss_pred EEEEcCCcccccchHHHHHHhh
Q psy568 818 AFLLDESNVLESGFLERMNTLL 839 (1614)
Q Consensus 818 v~ll~d~~i~~~~~le~in~lL 839 (1614)
++++||-+-.++..-..+..+|
T Consensus 79 ~l~ldei~~l~~~~q~~Ll~~l 100 (145)
T 3n70_A 79 TLVLSHPEHLTREQQYHLVQLQ 100 (145)
T ss_dssp CEEEECGGGSCHHHHHHHHHHH
T ss_pred EEEEcChHHCCHHHHHHHHHHH
Confidence 6777887655555444444443
No 132
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.20 E-value=0.00036 Score=71.73 Aligned_cols=38 Identities=16% Similarity=0.199 Sum_probs=29.2
Q ss_pred cCCCEEEecCCCCchHHHHHHHHhcCC--CCceEEEEccc
Q psy568 415 EHKPLVLCGPPGSGKTMTLLSALRALP--DMEVVSLNFSS 452 (1614)
Q Consensus 415 ~~~~vLL~Gp~GtGKT~lv~~~~~~l~--~~~~~~i~~s~ 452 (1614)
.|.+++|+||+|+|||++++.++.... +...+.++...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~ 74 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAAS 74 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHH
Confidence 688999999999999999988887542 33456665543
No 133
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.18 E-value=0.0016 Score=81.67 Aligned_cols=131 Identities=13% Similarity=0.218 Sum_probs=80.5
Q ss_pred CccEEEeecCCCChHHHHHHHHHHcCCeEEEEEecCCCChhcHHHHHHHH---------HHHh----ccCCCcEEEEEcC
Q psy568 757 QGHLLLIGVSGAGKTTLSRFVAFMNGLSVFQIRAHNKYTGADFDEDLRTV---------LRRS----GCKNEKIAFLLDE 823 (1614)
Q Consensus 757 ~gh~LLvG~~GsGKtsl~rlaA~~~~~~~~~i~~~~~~~~~df~~~lk~~---------l~~a----g~~~~~~v~ll~d 823 (1614)
..++||.||+|+|||++++.+|...|+++++++.+...+.......++.. +..+ ...+++.++++||
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDE 156 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDE 156 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEEC
Confidence 34799999999999999999999999999999876554432222222211 1111 1235678899988
Q ss_pred Ccccccc---hHHHHHHhhccCCCCCCCChhhHHHHHHHhHHHHHHcCCCCCCHHHHHHHHHHHHhhcceEEEEECCCCh
Q psy568 824 SNVLESG---FLERMNTLLANGEIPGLFEGDEYTTLMTQCKEGAQREGLMLDSNEELYKWFTQQVMKNLHVVFTMNPSSE 900 (1614)
Q Consensus 824 ~~i~~~~---~le~in~lL~~G~v~~Lf~~eE~~~i~~~~~~~~~~~~~~~~s~~~l~~~f~~rv~~nlhivl~~sp~~~ 900 (1614)
.+-.... .+..++.++ +. .+..|+++.+....
T Consensus 157 id~l~~~~~~~l~~L~~~l-------------------------~~--------------------~~~~iIli~~~~~~ 191 (516)
T 1sxj_A 157 VDGMSGGDRGGVGQLAQFC-------------------------RK--------------------TSTPLILICNERNL 191 (516)
T ss_dssp GGGCCTTSTTHHHHHHHHH-------------------------HH--------------------CSSCEEEEESCTTS
T ss_pred CCccchhhHHHHHHHHHHH-------------------------Hh--------------------cCCCEEEEEcCCCC
Confidence 6543221 111111111 10 24457776654321
Q ss_pred hhHHHhhhCccccccceecccCCCcHHHHHHHHHHhhc
Q psy568 901 GLKDRAATSPALFNRCVLNWFGDWSDTALYQVAKEFTS 938 (1614)
Q Consensus 901 ~~r~~~~~~PaL~~~~~i~wf~~W~~eaL~~va~~~l~ 938 (1614)
...|.+.++|...-|.+.+.+.+..+....+.
T Consensus 192 ------~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~ 223 (516)
T 1sxj_A 192 ------PKMRPFDRVCLDIQFRRPDANSIKSRLMTIAI 223 (516)
T ss_dssp ------STTGGGTTTSEEEECCCCCHHHHHHHHHHHHH
T ss_pred ------ccchhhHhceEEEEeCCCCHHHHHHHHHHHHH
Confidence 12355778888888999999988777665543
No 134
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.18 E-value=0.0015 Score=76.66 Aligned_cols=131 Identities=17% Similarity=0.256 Sum_probs=83.0
Q ss_pred ccEEEeecCCCChHHHHHHHHHHc-----CCeEEEEEecCCCChhcHHHHHHHHHH-Hhcc-CCCcEEEEEcCCcccccc
Q psy568 758 GHLLLIGVSGAGKTTLSRFVAFMN-----GLSVFQIRAHNKYTGADFDEDLRTVLR-RSGC-KNEKIAFLLDESNVLESG 830 (1614)
Q Consensus 758 gh~LLvG~~GsGKtsl~rlaA~~~-----~~~~~~i~~~~~~~~~df~~~lk~~l~-~ag~-~~~~~v~ll~d~~i~~~~ 830 (1614)
.|++|.|++|+|||++++.+|... +..++.++.....+..+.++-++.+.. ..+. .+++.++++||.+.....
T Consensus 43 ~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~ 122 (323)
T 1sxj_B 43 PHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAG 122 (323)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChHHHHHHHHHHHhccccCCCCCceEEEEECcccCCHH
Confidence 469999999999999999888764 345666665554454444443333321 1233 445788899886544332
Q ss_pred hHHHHHHhhccCCCCCCCChhhHHHHHHHhHHHHHHcCCCCCCHHHHHHHHHHHHhhcceEEEEECCCChhhHHHhhhCc
Q psy568 831 FLERMNTLLANGEIPGLFEGDEYTTLMTQCKEGAQREGLMLDSNEELYKWFTQQVMKNLHVVFTMNPSSEGLKDRAATSP 910 (1614)
Q Consensus 831 ~le~in~lL~~G~v~~Lf~~eE~~~i~~~~~~~~~~~~~~~~s~~~l~~~f~~rv~~nlhivl~~sp~~~~~r~~~~~~P 910 (1614)
.. |.|+ . +++.-..+..++++.++.. ...|
T Consensus 123 ~~---~~L~---------------~-------------------------~le~~~~~~~~il~~~~~~-------~l~~ 152 (323)
T 1sxj_B 123 AQ---QALR---------------R-------------------------TMELYSNSTRFAFACNQSN-------KIIE 152 (323)
T ss_dssp HH---HTTH---------------H-------------------------HHHHTTTTEEEEEEESCGG-------GSCH
T ss_pred HH---HHHH---------------H-------------------------HHhccCCCceEEEEeCChh-------hchh
Confidence 11 1110 0 1111224677888775521 3478
Q ss_pred cccccceecccCCCcHHHHHHHHHHhhc
Q psy568 911 ALFNRCVLNWFGDWSDTALYQVAKEFTS 938 (1614)
Q Consensus 911 aL~~~~~i~wf~~W~~eaL~~va~~~l~ 938 (1614)
++.++|.+.-|.+.+.+.+..+....+.
T Consensus 153 ~l~sr~~~i~~~~~~~~~~~~~l~~~~~ 180 (323)
T 1sxj_B 153 PLQSQCAILRYSKLSDEDVLKRLLQIIK 180 (323)
T ss_dssp HHHTTSEEEECCCCCHHHHHHHHHHHHH
T ss_pred HHHhhceEEeecCCCHHHHHHHHHHHHH
Confidence 8999999999999999988887776654
No 135
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=97.14 E-value=0.00069 Score=83.67 Aligned_cols=143 Identities=14% Similarity=0.267 Sum_probs=87.6
Q ss_pred HHHHHHHhccEEEEecCCCCChhhHHHHHHHHHHHhhcCCceEEEeCCCCCCcCcccccccCCCCccccchHHHHHHHHH
Q psy568 35 QLYQISNLNHGLMMVGPSGSGKSTAWKVLLKALERYEGVEGVAHIIDPKAISKEALYGVLDPNTREWTDGLFTHILRRII 114 (1614)
Q Consensus 35 qL~e~~~~r~gVmlvG~~gsGKTt~~~~L~~al~~~~~~~~~~~~inPkais~~eLyG~~d~~t~eW~DGvls~i~r~~~ 114 (1614)
.+...+..++.|+|+||||+|||++.+.++..+. .......++....+.++|+|.++... .-..|.+...
T Consensus 33 ~l~~al~~~~~VLL~GpPGtGKT~LAraLa~~l~----~~~~f~~~~~~~~t~~dL~G~~~~~~-~~~~g~~~~~----- 102 (500)
T 3nbx_X 33 LCLLAALSGESVFLLGPPGIAKSLIARRLKFAFQ----NARAFEYLMTRFSTPEEVFGPLSIQA-LKDEGRYERL----- 102 (500)
T ss_dssp HHHHHHHHTCEEEEECCSSSSHHHHHHHGGGGBS----SCCEEEEECCTTCCHHHHHCCBC-----------CBC-----
T ss_pred HHHHHHhcCCeeEeecCchHHHHHHHHHHHHHHh----hhhHHHHHHHhcCCHHHhcCcccHHH-HhhchhHHhh-----
Confidence 4455677789999999999999999999988752 12223345555457789999754221 0011211100
Q ss_pred hhhcCCCCCceEEEEc--cCCChhhhhhhhhhhcCCCccccCCCceeeCCCCceEEEEeccccc---cCcccccccee-E
Q psy568 115 DNVRGEISKRQWIIFD--GDVDPEWVENLNSVLDDNKLLTLPNGERLSLPPNIRIMFEVQDLKY---ATLATVSRCGM-I 188 (1614)
Q Consensus 115 ~~~~~~~~~~~WivfD--G~vd~~WiE~lnsvLDdnk~L~L~nGeri~l~~~~~~iFEv~dL~~---ASPAtVSRcgm-v 188 (1614)
..+......++++| +..++.-...|-.+|++... +. .|....++..+ +|+-++.+.. ..||..+|+++ |
T Consensus 103 --~~g~l~~~~IL~IDEI~r~~~~~q~~LL~~lee~~v-~i-~G~~~~~~~~~-iI~ATN~lpe~~~~~~aLldRF~~~i 177 (500)
T 3nbx_X 103 --TSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERQF-RN-GAHVEKIPMRL-LVAASNELPEADSSLEALYDRMLIRL 177 (500)
T ss_dssp --CTTSGGGCSEEEEESGGGCCHHHHHHHHHHHHSSEE-EC-SSSEEECCCCE-EEEEESSCCCTTCTTHHHHTTCCEEE
T ss_pred --hccCCCcceeeeHHhHhhhcHHHHHHHHHHHHHHhc-cC-CCCcCCcchhh-hhhccccCCCccccHHHHHHHHHHHH
Confidence 01111124689999 45677777888888887544 33 67777777664 5666654433 23589999976 5
Q ss_pred EecC
Q psy568 189 WFSE 192 (1614)
Q Consensus 189 ~~~~ 192 (1614)
++++
T Consensus 178 ~v~~ 181 (500)
T 3nbx_X 178 WLDK 181 (500)
T ss_dssp ECCS
T ss_pred HHHH
Confidence 5544
No 136
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.14 E-value=0.00044 Score=80.05 Aligned_cols=71 Identities=17% Similarity=0.214 Sum_probs=50.1
Q ss_pred cCCccEEEeecCCCChHHHHHHHHHHcCCeEEEEEecCCCC--hhcHHHHHHHHHHHhc---cCCCcEEEEEcCCcc
Q psy568 755 QPQGHLLLIGVSGAGKTTLSRFVAFMNGLSVFQIRAHNKYT--GADFDEDLRTVLRRSG---CKNEKIAFLLDESNV 826 (1614)
Q Consensus 755 ~p~gh~LLvG~~GsGKtsl~rlaA~~~~~~~~~i~~~~~~~--~~df~~~lk~~l~~ag---~~~~~~v~ll~d~~i 826 (1614)
.|+| +||.||+|+|||++++.+|..+|.+++.++.+.-.+ ..+-...++.++..+. ....+.++++||-+-
T Consensus 35 ~p~~-lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~ 110 (293)
T 3t15_A 35 VPLI-LGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDA 110 (293)
T ss_dssp CCSE-EEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC-
T ss_pred CCeE-EEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhh
Confidence 4554 899999999999999999999999999998543211 1122234556666652 356788999998643
No 137
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.14 E-value=0.0026 Score=71.02 Aligned_cols=142 Identities=13% Similarity=0.197 Sum_probs=81.8
Q ss_pred hHHHHHHHHHhcC----CCEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCCHHHHHhHhhcccceeecCCccccc
Q psy568 404 RHESLLYTWLAEH----KPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTPELLLKTFDHYCEYRKTPNGVILS 479 (1614)
Q Consensus 404 r~~~ll~~~l~~~----~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~~~~l~~~~~~~~~~~~~~~g~~~~ 479 (1614)
.....+..+++.. .+++|+||||||||.++..+++...- .-.++++... . .+.
T Consensus 88 ~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~~l--~G~vn~~~~~--------------------f-~l~ 144 (267)
T 1u0j_A 88 YAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTVPF--YGCVNWTNEN--------------------F-PFN 144 (267)
T ss_dssp HHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHSSC--EEECCTTCSS--------------------C-TTG
T ss_pred HHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhhcc--cceeeccccc--------------------c-ccc
Confidence 4445566666653 35999999999999999988876421 1222443110 1 122
Q ss_pred cccCCceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceee-CCCCceEeecCeEEEEeecCCCCC---C---CCCCc
Q psy568 480 PIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYR-PADKQWVSLERIQCVGACNPPTDP---G---RKPLS 552 (1614)
Q Consensus 480 p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~-~~~~~~~~~~~~~~iaa~n~~~~~---g---~~~l~ 552 (1614)
+. .++ .|++.||..+.. ...+.+|.+++.+..-. .+...-..+...-+|.|+|..-.. | .....
T Consensus 145 ~~-~~k-~i~l~Ee~~~~~-------d~~~~lr~i~~G~~~~id~K~k~~~~v~~tPvIitsN~~i~~~~~g~~~s~~~~ 215 (267)
T 1u0j_A 145 DC-VDK-MVIWWEEGKMTA-------KVVESAKAILGGSKVRVDQKCKSSAQIDPTPVIVTSNTNMCAVIDGNSTTFEHQ 215 (267)
T ss_dssp GG-SSC-SEEEECSCCEET-------TTHHHHHHHHTTCCEEC------CCEECCCCEEEEESSCTTCEEETTEEECTTH
T ss_pred cc-ccc-EEEEeccccchh-------HHHHHHHHHhCCCcEEEecCcCCcccccCCCEEEEecCCcccccccCccchhhh
Confidence 22 233 344468887732 24466899887655433 222222355666778888863210 0 02455
Q ss_pred ccccccccEEEec--------CCChhHHHHHHH
Q psy568 553 HRFLRHVPVIYVD--------YPGETSLKQIYG 577 (1614)
Q Consensus 553 ~r~~r~f~~i~i~--------~p~~~~l~~I~~ 577 (1614)
+.|.+|..++.++ ..+.++....|.
T Consensus 216 ~~L~sR~~~f~F~~~~p~~~~~lt~~~~~~f~~ 248 (267)
T 1u0j_A 216 QPLQDRMFKFELTRRLDHDFGKVTKQEVKDFFR 248 (267)
T ss_dssp HHHHTTEEEEECCSCCCTTSCCCCHHHHHHHHH
T ss_pred HHHhhhEEEEECCCcCCcccCCCCHHHHHHHHH
Confidence 6789999999998 455555555544
No 138
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=97.09 E-value=0.0014 Score=77.81 Aligned_cols=160 Identities=11% Similarity=0.037 Sum_probs=90.4
Q ss_pred hHHHHHHHHHhcCCCEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCC------CHHHHHhHhhccccee-------
Q psy568 404 RHESLLYTWLAEHKPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSAT------TPELLLKTFDHYCEYR------- 470 (1614)
Q Consensus 404 r~~~ll~~~l~~~~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t------~~~~l~~~~~~~~~~~------- 470 (1614)
+....+..++..+..++++||+|+|||++++.+++.. + .+.+++.... +...+...+...+...
T Consensus 19 ~el~~L~~~l~~~~~v~i~G~~G~GKT~Ll~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 95 (350)
T 2qen_A 19 EESRKLEESLENYPLTLLLGIRRVGKSSLLRAFLNER-P--GILIDCRELYAERGHITREELIKELQSTISPFQKFQSKF 95 (350)
T ss_dssp HHHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHS-S--EEEEEHHHHHHTTTCBCHHHHHHHHHHHSCSHHHHHHHH
T ss_pred HHHHHHHHHHhcCCeEEEECCCcCCHHHHHHHHHHHc-C--cEEEEeecccccccCCCHHHHHHHHHHHHHHHHhHhhhc
Confidence 3344455566667899999999999999999999876 3 6777776542 4444443332211100
Q ss_pred ---ecCCc-----------cccccc-----cCCceEEEEeccCCCCCc-cccCcccHHHHHHHHHHcCceeeCCCCceEe
Q psy568 471 ---KTPNG-----------VILSPI-----QLGKWLVLFCDEINLPDM-DKYATQRVISFLRQLIEQRGFYRPADKQWVS 530 (1614)
Q Consensus 471 ---~~~~g-----------~~~~p~-----~~gk~~vlfiDdin~p~~-d~~g~q~~lelLrqlld~~~~~~~~~~~~~~ 530 (1614)
....| .++... ..+ +++++|||++.... +.-.....+.+|+.+.++.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~~~------------ 162 (350)
T 2qen_A 96 KISLNLKFLTLEPRKLSLREVFRELNDLGEELG-EFIVAFDEAQYLRFYGSRGGKELLALFAYAYDSL------------ 162 (350)
T ss_dssp TCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHS-CEEEEEETGGGGGGBTTTTTHHHHHHHHHHHHHC------------
T ss_pred eeEEEecceeeccccchHHHHHHHHHHHHhccC-CEEEEEeCHHHHhccCccchhhHHHHHHHHHHhc------------
Confidence 00000 000000 012 68999999997432 0002345778888887752
Q ss_pred ecCeEEEEeecCCCCCCC----CCCccccccc-ccEEEecCCChhHHHHHHHHHH
Q psy568 531 LERIQCVGACNPPTDPGR----KPLSHRFLRH-VPVIYVDYPGETSLKQIYGTFS 580 (1614)
Q Consensus 531 ~~~~~~iaa~n~~~~~g~----~~l~~r~~r~-f~~i~i~~p~~~~l~~I~~~~~ 580 (1614)
+++.+|.|..+...-.+ ......+..+ ...+.+.+.+.++...++...+
T Consensus 163 -~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~ 216 (350)
T 2qen_A 163 -PNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGF 216 (350)
T ss_dssp -TTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHH
T ss_pred -CCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHH
Confidence 24666666543210000 0112223323 3488999999999888866543
No 139
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.08 E-value=0.003 Score=74.54 Aligned_cols=140 Identities=16% Similarity=0.188 Sum_probs=84.2
Q ss_pred HHHHhccEEEEecCCCCChhhHHHHHHHHHHHhhcCC------------------ceEEEeCCCCCCcCcccccccCCCC
Q psy568 38 QISNLNHGLMMVGPSGSGKSTAWKVLLKALERYEGVE------------------GVAHIIDPKAISKEALYGVLDPNTR 99 (1614)
Q Consensus 38 e~~~~r~gVmlvG~~gsGKTt~~~~L~~al~~~~~~~------------------~~~~~inPkais~~eLyG~~d~~t~ 99 (1614)
+.=+..|++++.||+|+|||++.+.+++++..-.... ...+.++|.. . .
T Consensus 19 ~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~-----------~-~- 85 (334)
T 1a5t_A 19 QAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEK-----------G-K- 85 (334)
T ss_dssp HTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCT-----------T-C-
T ss_pred HcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccc-----------c-C-
Confidence 3334578999999999999999999999985211000 1123344321 0 0
Q ss_pred ccccchHHHHHHHHHhhhc--CCCCCceEEEEccCCChhhhhhhhhhhcCCCccccCCCceeeCCCCceEEEEecccccc
Q psy568 100 EWTDGLFTHILRRIIDNVR--GEISKRQWIIFDGDVDPEWVENLNSVLDDNKLLTLPNGERLSLPPNIRIMFEVQDLKYA 177 (1614)
Q Consensus 100 eW~DGvls~i~r~~~~~~~--~~~~~~~WivfDG~vd~~WiE~lnsvLDdnk~L~L~nGeri~l~~~~~~iFEv~dL~~A 177 (1614)
+++=..-+|+...... .....++-+|+|. +|..=-+..|.+| |.|- .-|+++.+|+-+++....
T Consensus 86 ---~~~~i~~ir~l~~~~~~~~~~~~~kvviIde-ad~l~~~a~naLL---k~lE-------ep~~~~~~Il~t~~~~~l 151 (334)
T 1a5t_A 86 ---NTLGVDAVREVTEKLNEHARLGGAKVVWVTD-AALLTDAAANALL---KTLE-------EPPAETWFFLATREPERL 151 (334)
T ss_dssp ---SSBCHHHHHHHHHHTTSCCTTSSCEEEEESC-GGGBCHHHHHHHH---HHHT-------SCCTTEEEEEEESCGGGS
T ss_pred ---CCCCHHHHHHHHHHHhhccccCCcEEEEECc-hhhcCHHHHHHHH---HHhc-------CCCCCeEEEEEeCChHhC
Confidence 1111223444432221 1123578899996 4433334455554 2221 125678999999999889
Q ss_pred CccccccceeEEecCcccchHHHHHHHHHh
Q psy568 178 TLATVSRCGMIWFSEDVLSTEMIFENYLSR 207 (1614)
Q Consensus 178 SPAtVSRcgmv~~~~~~l~~~~~~~~~~~~ 207 (1614)
-|+..|||..+.+.+-+ ..-+..|+..
T Consensus 152 ~~ti~SRc~~~~~~~~~---~~~~~~~L~~ 178 (334)
T 1a5t_A 152 LATLRSRCRLHYLAPPP---EQYAVTWLSR 178 (334)
T ss_dssp CHHHHTTSEEEECCCCC---HHHHHHHHHH
T ss_pred cHHHhhcceeeeCCCCC---HHHHHHHHHH
Confidence 99999999999987643 3345567754
No 140
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=97.07 E-value=0.0016 Score=77.68 Aligned_cols=157 Identities=10% Similarity=0.019 Sum_probs=87.5
Q ss_pred HHHHHHHHhcCCCEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccC-----CCHHHHHhHhhcccce-----------
Q psy568 406 ESLLYTWLAEHKPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSA-----TTPELLLKTFDHYCEY----------- 469 (1614)
Q Consensus 406 ~~ll~~~l~~~~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~-----t~~~~l~~~~~~~~~~----------- 469 (1614)
...+.. +.. ..++++||+|+|||++++.+++... ...+.+++... .+...+...+...+..
T Consensus 22 l~~L~~-l~~-~~v~i~G~~G~GKT~L~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~ 98 (357)
T 2fna_A 22 IEKLKG-LRA-PITLVLGLRRTGKSSIIKIGINELN-LPYIYLDLRKFEERNYISYKDFLLELQKEINKLVKRLPSLLKA 98 (357)
T ss_dssp HHHHHH-TCS-SEEEEEESTTSSHHHHHHHHHHHHT-CCEEEEEGGGGTTCSCCCHHHHHHHHHHHHHHHHHHCTTHHHH
T ss_pred HHHHHH-hcC-CcEEEECCCCCCHHHHHHHHHHhcC-CCEEEEEchhhccccCCCHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 334444 554 6899999999999999999988763 34677887653 3333332222111100
Q ss_pred -------e------ec-----CCcc---ccccc-cCC-ceEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCC
Q psy568 470 -------R------KT-----PNGV---ILSPI-QLG-KWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADK 526 (1614)
Q Consensus 470 -------~------~~-----~~g~---~~~p~-~~g-k~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~ 526 (1614)
. .. .... ++... ..+ ++++++|||++..... .+...+.+|+.+.+..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~--~~~~~~~~l~~~~~~~-------- 168 (357)
T 2fna_A 99 LKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKL--RGVNLLPALAYAYDNL-------- 168 (357)
T ss_dssp TTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGC--TTCCCHHHHHHHHHHC--------
T ss_pred hcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhcc--CchhHHHHHHHHHHcC--------
Confidence 0 00 0000 00000 011 2689999999974331 2345678888887752
Q ss_pred ceEeecCeEEEEeecCCCCCCC----CCCcccccccc-cEEEecCCChhHHHHHHHHHH
Q psy568 527 QWVSLERIQCVGACNPPTDPGR----KPLSHRFLRHV-PVIYVDYPGETSLKQIYGTFS 580 (1614)
Q Consensus 527 ~~~~~~~~~~iaa~n~~~~~g~----~~l~~r~~r~f-~~i~i~~p~~~~l~~I~~~~~ 580 (1614)
+++.+|.|+.+...-.+ ......+..++ ..+.+..++.++...++...+
T Consensus 169 -----~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~ 222 (357)
T 2fna_A 169 -----KRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGF 222 (357)
T ss_dssp -----TTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHH
T ss_pred -----CCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHH
Confidence 14666776654310000 11122343344 688999999999888876543
No 141
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.02 E-value=0.002 Score=74.73 Aligned_cols=72 Identities=28% Similarity=0.352 Sum_probs=51.8
Q ss_pred ccCCccEEEeecCCCChHHHHHHHHHHcCCeEEEEEecCCCC--hhcHHHHHHHHHHHhccCCCcEEEEEcCCcc
Q psy568 754 RQPQGHLLLIGVSGAGKTTLSRFVAFMNGLSVFQIRAHNKYT--GADFDEDLRTVLRRSGCKNEKIAFLLDESNV 826 (1614)
Q Consensus 754 ~~p~gh~LLvG~~GsGKtsl~rlaA~~~~~~~~~i~~~~~~~--~~df~~~lk~~l~~ag~~~~~~v~ll~d~~i 826 (1614)
..|..++||.||+|+|||++++.+|...+.+++.++.....+ ..+....++.++..+. ...+.++++||-+-
T Consensus 51 ~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~vl~iDEid~ 124 (297)
T 3b9p_A 51 RAPAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVAR-HMQPSIIFIDEVDS 124 (297)
T ss_dssp GCCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSSSSCSCHHHHHHHHHHHHH-HTCSEEEEEETGGG
T ss_pred CCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhhcccchHHHHHHHHHHHHH-HcCCcEEEeccHHH
Confidence 346667999999999999999999999999999998765432 1223344455554443 34677888888643
No 142
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.02 E-value=0.0041 Score=71.91 Aligned_cols=139 Identities=12% Similarity=-0.005 Sum_probs=78.9
Q ss_pred cCCccEEEeecCCCChHHHHHHHHHHc----------CCeEEEEEecCCCChhcH------------------HHHHHHH
Q psy568 755 QPQGHLLLIGVSGAGKTTLSRFVAFMN----------GLSVFQIRAHNKYTGADF------------------DEDLRTV 806 (1614)
Q Consensus 755 ~p~gh~LLvG~~GsGKtsl~rlaA~~~----------~~~~~~i~~~~~~~~~df------------------~~~lk~~ 806 (1614)
.+.++++|.||||+|||++++.++..+ ++.++.++.....+..+. .+.|...
T Consensus 43 ~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~ 122 (318)
T 3te6_A 43 SQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNFY 122 (318)
T ss_dssp TCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Confidence 455679999999999999999998776 456777775544332222 2223333
Q ss_pred HHHh-ccCCCcEEEEEcCCcccccchHHHHHHhhccCCCCCCCChhhHHHHHHHhHHHHHHcCCCCCCHHHHHHHHHHHH
Q psy568 807 LRRS-GCKNEKIAFLLDESNVLESGFLERMNTLLANGEIPGLFEGDEYTTLMTQCKEGAQREGLMLDSNEELYKWFTQQV 885 (1614)
Q Consensus 807 l~~a-g~~~~~~v~ll~d~~i~~~~~le~in~lL~~G~v~~Lf~~eE~~~i~~~~~~~~~~~~~~~~s~~~l~~~f~~rv 885 (1614)
+... ...++++++++|+-+... ..+.+|.+|--.-
T Consensus 123 f~~~~~~~~~~~ii~lDE~d~l~--------------------------------------------~q~~L~~l~~~~~ 158 (318)
T 3te6_A 123 ITNVPKAKKRKTLILIQNPENLL--------------------------------------------SEKILQYFEKWIS 158 (318)
T ss_dssp HHHSCGGGSCEEEEEEECCSSSC--------------------------------------------CTHHHHHHHHHHH
T ss_pred HHHhhhccCCceEEEEecHHHhh--------------------------------------------cchHHHHHHhccc
Confidence 3332 123455666666543221 1123444442111
Q ss_pred hh--cceEEEEECCCChhhHHHhhhCccccccc--eecccCCCcHHHHHHHHHHhhccc
Q psy568 886 MK--NLHVVFTMNPSSEGLKDRAATSPALFNRC--VLNWFGDWSDTALYQVAKEFTSKI 940 (1614)
Q Consensus 886 ~~--nlhivl~~sp~~~~~r~~~~~~PaL~~~~--~i~wf~~W~~eaL~~va~~~l~~~ 940 (1614)
.. ++-++..-+... +..+ ...|++.++| .+..|.+.+.+.+..+..+-+...
T Consensus 159 ~~~s~~~vI~i~n~~d--~~~~-~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~~ 214 (318)
T 3te6_A 159 SKNSKLSIICVGGHNV--TIRE-QINIMPSLKAHFTEIKLNKVDKNELQQMIITRLKSL 214 (318)
T ss_dssp CSSCCEEEEEECCSSC--CCHH-HHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHHH
T ss_pred ccCCcEEEEEEecCcc--cchh-hcchhhhccCCceEEEeCCCCHHHHHHHHHHHHHhh
Confidence 12 343333333322 1111 1355666665 678899999999999998888764
No 143
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.97 E-value=0.0038 Score=73.88 Aligned_cols=131 Identities=19% Similarity=0.218 Sum_probs=80.4
Q ss_pred ccEEEeecCCCChHHHHHHHHHHcC-----CeEEEEEecCCCChhcHHHHHHHHHHHh-ccCCCcEEEEEcCCcccccch
Q psy568 758 GHLLLIGVSGAGKTTLSRFVAFMNG-----LSVFQIRAHNKYTGADFDEDLRTVLRRS-GCKNEKIAFLLDESNVLESGF 831 (1614)
Q Consensus 758 gh~LLvG~~GsGKtsl~rlaA~~~~-----~~~~~i~~~~~~~~~df~~~lk~~l~~a-g~~~~~~v~ll~d~~i~~~~~ 831 (1614)
.|++|+||+|+|||++++.+|.... ..+..++.+...+..+.++.++.+.... ...+.+.++++|+.+.....-
T Consensus 47 ~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~ 126 (340)
T 1sxj_C 47 PHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAA 126 (340)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSHHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccccHHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHHH
Confidence 4699999999999999999987642 2356666555445444444343333211 122346777888764432211
Q ss_pred HHHHHHhhccCCCCCCCChhhHHHHHHHhHHHHHHcCCCCCCHHHHHHHHHHHHhhcceEEEEECCCChhhHHHhhhCcc
Q psy568 832 LERMNTLLANGEIPGLFEGDEYTTLMTQCKEGAQREGLMLDSNEELYKWFTQQVMKNLHVVFTMNPSSEGLKDRAATSPA 911 (1614)
Q Consensus 832 le~in~lL~~G~v~~Lf~~eE~~~i~~~~~~~~~~~~~~~~s~~~l~~~f~~rv~~nlhivl~~sp~~~~~r~~~~~~Pa 911 (1614)
. |. + .. +++.-..+.+++++-++.. ...|+
T Consensus 127 ~---~~------------------L----~~------------------~le~~~~~~~~il~~n~~~-------~i~~~ 156 (340)
T 1sxj_C 127 Q---NA------------------L----RR------------------VIERYTKNTRFCVLANYAH-------KLTPA 156 (340)
T ss_dssp H---HH------------------H----HH------------------HHHHTTTTEEEEEEESCGG-------GSCHH
T ss_pred H---HH------------------H----HH------------------HHhcCCCCeEEEEEecCcc-------ccchh
Confidence 1 11 1 10 1112223567777665421 34788
Q ss_pred ccccceecccCCCcHHHHHHHHHHhhc
Q psy568 912 LFNRCVLNWFGDWSDTALYQVAKEFTS 938 (1614)
Q Consensus 912 L~~~~~i~wf~~W~~eaL~~va~~~l~ 938 (1614)
+.++|.+..|.+.+.+.+.....+.+.
T Consensus 157 i~sR~~~~~~~~l~~~~~~~~l~~~~~ 183 (340)
T 1sxj_C 157 LLSQCTRFRFQPLPQEAIERRIANVLV 183 (340)
T ss_dssp HHTTSEEEECCCCCHHHHHHHHHHHHH
T ss_pred HHhhceeEeccCCCHHHHHHHHHHHHH
Confidence 999999999999999998888777664
No 144
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.95 E-value=0.0035 Score=73.67 Aligned_cols=132 Identities=19% Similarity=0.294 Sum_probs=79.0
Q ss_pred ccEEEeecCCCChHHHHHHHHHHc---CCeEEEEEecCCCChhcHHHHHHHHHHHhc------cCCCcEEEEEcCCcccc
Q psy568 758 GHLLLIGVSGAGKTTLSRFVAFMN---GLSVFQIRAHNKYTGADFDEDLRTVLRRSG------CKNEKIAFLLDESNVLE 828 (1614)
Q Consensus 758 gh~LLvG~~GsGKtsl~rlaA~~~---~~~~~~i~~~~~~~~~df~~~lk~~l~~ag------~~~~~~v~ll~d~~i~~ 828 (1614)
.+++|+||+|+|||++++.++... +.+++.++.. ++.+++...+.... ....+.++++||-+...
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~vL~iDEi~~l~ 111 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD------DFAQAMVEHLKKGTINEFRNMYKSVDLLLLDDVQFLS 111 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH------HHHHHHHHHHHHTCHHHHHHHHHTCSEEEEECGGGGT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHH------HHHHHHHHHHHcCcHHHHHHHhcCCCEEEEcCccccc
Confidence 579999999999999999999877 8888888653 33333322222110 01125678888754432
Q ss_pred cchHHHHHHhhccCCCCCCCChhhHHHHHHHhHHHHHHcCCCCCCHHHHHHHHHHHHhhcceEEEEECCCChhhHHHhhh
Q psy568 829 SGFLERMNTLLANGEIPGLFEGDEYTTLMTQCKEGAQREGLMLDSNEELYKWFTQQVMKNLHVVFTMNPSSEGLKDRAAT 908 (1614)
Q Consensus 829 ~~~le~in~lL~~G~v~~Lf~~eE~~~i~~~~~~~~~~~~~~~~s~~~l~~~f~~rv~~nlhivl~~sp~~~~~r~~~~~ 908 (1614)
.. .+ +.+.++..|-.....+..+|++-+.....+ -..
T Consensus 112 ~~-------------------~~---------------------~~~~l~~~l~~~~~~~~~iii~~~~~~~~l---~~l 148 (324)
T 1l8q_A 112 GK-------------------ER---------------------TQIEFFHIFNTLYLLEKQIILASDRHPQKL---DGV 148 (324)
T ss_dssp TC-------------------HH---------------------HHHHHHHHHHHHHHTTCEEEEEESSCGGGC---TTS
T ss_pred CC-------------------hH---------------------HHHHHHHHHHHHHHCCCeEEEEecCChHHH---HHh
Confidence 10 00 012233333333445567777765332211 124
Q ss_pred Cccccccc---eecccCCCcHHHHHHHHHHhhcc
Q psy568 909 SPALFNRC---VLNWFGDWSDTALYQVAKEFTSK 939 (1614)
Q Consensus 909 ~PaL~~~~---~i~wf~~W~~eaL~~va~~~l~~ 939 (1614)
.|+|.++| .+.-+.+ +.+....+..+.+..
T Consensus 149 ~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~ 181 (324)
T 1l8q_A 149 SDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKE 181 (324)
T ss_dssp CHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHH
T ss_pred hhHhhhcccCceEEEeCC-CHHHHHHHHHHHHHh
Confidence 56777777 5667888 999998888877654
No 145
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.94 E-value=0.0051 Score=74.21 Aligned_cols=137 Identities=12% Similarity=0.123 Sum_probs=77.9
Q ss_pred cEEEeecCCCChHHHHHHHHHHc----CCeEEEEEecCCCChhcHHHHHHHHH-------------------HHhccCCC
Q psy568 759 HLLLIGVSGAGKTTLSRFVAFMN----GLSVFQIRAHNKYTGADFDEDLRTVL-------------------RRSGCKNE 815 (1614)
Q Consensus 759 h~LLvG~~GsGKtsl~rlaA~~~----~~~~~~i~~~~~~~~~df~~~lk~~l-------------------~~ag~~~~ 815 (1614)
+++|+|++|+|||++++.++... +..++.++.....+..++...+-..+ ......++
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~ 125 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDL 125 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCC
Confidence 69999999999999999988776 56788887655444333322211110 00011244
Q ss_pred cEEEEEcCCcccccchHHHHHHhhccCCCCCCCChhhHHHHHHHhHHHHHHcCCCCCCHHHHHHHHHHHHhhcceEEEEE
Q psy568 816 KIAFLLDESNVLESGFLERMNTLLANGEIPGLFEGDEYTTLMTQCKEGAQREGLMLDSNEELYKWFTQQVMKNLHVVFTM 895 (1614)
Q Consensus 816 ~~v~ll~d~~i~~~~~le~in~lL~~G~v~~Lf~~eE~~~i~~~~~~~~~~~~~~~~s~~~l~~~f~~rv~~nlhivl~~ 895 (1614)
+.++++||.+-.++..++.+-.++... ...-+.++++|++-
T Consensus 126 ~~vlilDE~~~l~~~~~~~L~~~~~~~---------------------------------------~~~~~~~~~iI~~~ 166 (389)
T 1fnn_A 126 YMFLVLDDAFNLAPDILSTFIRLGQEA---------------------------------------DKLGAFRIALVIVG 166 (389)
T ss_dssp CEEEEEETGGGSCHHHHHHHHHHTTCH---------------------------------------HHHSSCCEEEEEEE
T ss_pred eEEEEEECccccchHHHHHHHHHHHhC---------------------------------------CCCCcCCEEEEEEE
Confidence 666777765544333333222222000 00001377888776
Q ss_pred CCCChhhHHHhhhCccccccce--ecccCCCcHHHHHHHHHHhhc
Q psy568 896 NPSSEGLKDRAATSPALFNRCV--LNWFGDWSDTALYQVAKEFTS 938 (1614)
Q Consensus 896 sp~~~~~r~~~~~~PaL~~~~~--i~wf~~W~~eaL~~va~~~l~ 938 (1614)
+... +..+ ..|.+.++|. +.-|.+++.+.+..+....+.
T Consensus 167 ~~~~--~~~~--l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~ 207 (389)
T 1fnn_A 167 HNDA--VLNN--LDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAK 207 (389)
T ss_dssp SSTH--HHHT--SCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHH
T ss_pred CCch--HHHH--hCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHH
Confidence 5431 3222 3455656555 577899999988888877665
No 146
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.91 E-value=0.0016 Score=73.79 Aligned_cols=67 Identities=24% Similarity=0.387 Sum_probs=47.5
Q ss_pred cCCccEEEeecCCCChHHHHHHHHHHcCCeEEEEEecCCCC--hhcHHHHHHHHHHHhccCCCcEEEEEcC
Q psy568 755 QPQGHLLLIGVSGAGKTTLSRFVAFMNGLSVFQIRAHNKYT--GADFDEDLRTVLRRSGCKNEKIAFLLDE 823 (1614)
Q Consensus 755 ~p~gh~LLvG~~GsGKtsl~rlaA~~~~~~~~~i~~~~~~~--~~df~~~lk~~l~~ag~~~~~~v~ll~d 823 (1614)
.|+| ++|+|++|+|||++++.+|...+.+++.++...-.+ ..+....++.++..+. .+.+.++++|+
T Consensus 44 ~~~~-vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~-~~~~~il~iDe 112 (257)
T 1lv7_A 44 IPKG-VLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAK-KAAPCIIFIDE 112 (257)
T ss_dssp CCCE-EEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTSCCCCCHHHHHHHHHHHH-TTCSEEEEETT
T ss_pred CCCe-EEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHHhhhhhHHHHHHHHHHHH-HcCCeeehhhh
Confidence 3444 999999999999999999999999998886543221 1223345666666653 34567777776
No 147
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=96.91 E-value=0.00074 Score=85.84 Aligned_cols=129 Identities=14% Similarity=0.184 Sum_probs=89.1
Q ss_pred EEEEecCCCCChhhHHHHHHHHHHHhhcCCceEEEeCCCCCCcCcccccccC--CCCc--cccchHHHHHHHHHhhhcCC
Q psy568 45 GLMMVGPSGSGKSTAWKVLLKALERYEGVEGVAHIIDPKAISKEALYGVLDP--NTRE--WTDGLFTHILRRIIDNVRGE 120 (1614)
Q Consensus 45 gVmlvG~~gsGKTt~~~~L~~al~~~~~~~~~~~~inPkais~~eLyG~~d~--~t~e--W~DGvls~i~r~~~~~~~~~ 120 (1614)
.|+|+||||+|||++.+.+++.+.. ..+. .-...+...|.|.... .+++ +..|.+...
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~~r------~~~~-~~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~~A----------- 390 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVAPR------AVYT-TGKGSTAAGLTAAVVREKGTGEYYLEAGALVLA----------- 390 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTCSC------EECC-CTTCSTTTTSEEECSSGGGTSSCSEEECHHHHH-----------
T ss_pred ceEEECCCchHHHHHHHHHHHhCCC------ceec-CCCccccccccceeeeccccccccccCCeeEec-----------
Confidence 6999999999999999988876521 1111 1122344444444321 2333 456765432
Q ss_pred CCCceEEEEc--cCCChhhhhhhhhhhcCCCccccCCCceeeCCCCceEEEEecccc-------------ccCccccccc
Q psy568 121 ISKRQWIIFD--GDVDPEWVENLNSVLDDNKLLTLPNGERLSLPPNIRIMFEVQDLK-------------YATLATVSRC 185 (1614)
Q Consensus 121 ~~~~~WivfD--G~vd~~WiE~lnsvLDdnk~L~L~nGeri~l~~~~~~iFEv~dL~-------------~ASPAtVSRc 185 (1614)
....+++| +-+++.-...|..+|++...-.-..|....++..+++|.-+.... ..+||..|||
T Consensus 391 --~~gil~IDEid~l~~~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~RF 468 (595)
T 3f9v_A 391 --DGGIAVIDEIDKMRDEDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYISERPVSDNINLPPTILSRF 468 (595)
T ss_dssp --SSSEECCTTTTCCCSHHHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCTTCCSCTTSCSCTTTCSCSSSGGGC
T ss_pred --CCCcEEeehhhhCCHhHhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCcCCccCcccCchhccCCCHHHHhhC
Confidence 12578888 456777788899999986654456899999999999999887665 7899999999
Q ss_pred eeEEecCc
Q psy568 186 GMIWFSED 193 (1614)
Q Consensus 186 gmv~~~~~ 193 (1614)
.++++-.+
T Consensus 469 Dl~~~~~~ 476 (595)
T 3f9v_A 469 DLIFILKD 476 (595)
T ss_dssp SCCEEECC
T ss_pred eEEEEeCC
Confidence 87665443
No 148
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.88 E-value=0.0029 Score=79.63 Aligned_cols=145 Identities=17% Similarity=0.228 Sum_probs=81.4
Q ss_pred cCCccEEEeecCCCChHHHHHHHHHHcCCeEEEEEecCCCChhcHH-----------HHHHHHHHHhccCCCcEEEEEcC
Q psy568 755 QPQGHLLLIGVSGAGKTTLSRFVAFMNGLSVFQIRAHNKYTGADFD-----------EDLRTVLRRSGCKNEKIAFLLDE 823 (1614)
Q Consensus 755 ~p~gh~LLvG~~GsGKtsl~rlaA~~~~~~~~~i~~~~~~~~~df~-----------~~lk~~l~~ag~~~~~~v~ll~d 823 (1614)
.++.+++|+||+|+|||+++|.+|...+.++..+.+....+..+.. +.+...+..++.. .+ ++++|+
T Consensus 106 ~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~~~~~~~~~~~~a~~~-~~-vl~lDE 183 (543)
T 3m6a_A 106 LKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAMPGRIIQGMKKAGKL-NP-VFLLDE 183 (543)
T ss_dssp CCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC--------------------CHHHHHHTTCSS-SE-EEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhccCchHHHHHHHHhhcc-CC-EEEEhh
Confidence 3677899999999999999999999999999988765433322221 1223344444433 33 677787
Q ss_pred CcccccchHHH-HHHh---hccCCCCCCCChhhHHHHHHHhHHHHHHcCCCCCCHHHHHHHHHHHHh-hcceEEEEECCC
Q psy568 824 SNVLESGFLER-MNTL---LANGEIPGLFEGDEYTTLMTQCKEGAQREGLMLDSNEELYKWFTQQVM-KNLHVVFTMNPS 898 (1614)
Q Consensus 824 ~~i~~~~~le~-in~l---L~~G~v~~Lf~~eE~~~i~~~~~~~~~~~~~~~~s~~~l~~~f~~rv~-~nlhivl~~sp~ 898 (1614)
-+-..+..-.+ .+.+ |..+....+-. .+.. ..+. .+.-|+.+.++.
T Consensus 184 id~l~~~~~~~~~~~LL~~ld~~~~~~~~~-----------------~~~~------------~~~~~~~v~iI~ttN~~ 234 (543)
T 3m6a_A 184 IDKMSSDFRGDPSSAMLEVLDPEQNSSFSD-----------------HYIE------------ETFDLSKVLFIATANNL 234 (543)
T ss_dssp SSSCC---------CCGGGTCTTTTTBCCC-----------------SSSC------------CCCBCSSCEEEEECSST
T ss_pred hhhhhhhhccCHHHHHHHHHhhhhcceeec-----------------ccCC------------eeecccceEEEeccCcc
Confidence 65444432111 1111 11111000000 0000 0001 255666666654
Q ss_pred ChhhHHHhhhCccccccceecccCCCcHHHHHHHHHHhh
Q psy568 899 SEGLKDRAATSPALFNRCVLNWFGDWSDTALYQVAKEFT 937 (1614)
Q Consensus 899 ~~~~r~~~~~~PaL~~~~~i~wf~~W~~eaL~~va~~~l 937 (1614)
. ..-|+|.+||.+..|.+.+.+....++..++
T Consensus 235 ~-------~l~~aL~~R~~vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 235 A-------TIPGPLRDRMEIINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp T-------TSCHHHHHHEEEEECCCCCHHHHHHHHHHTH
T ss_pred c-------cCCHHHHhhcceeeeCCCCHHHHHHHHHHHH
Confidence 3 2347889999988999999999998888765
No 149
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.87 E-value=0.0011 Score=77.94 Aligned_cols=71 Identities=18% Similarity=0.366 Sum_probs=52.3
Q ss_pred cCCccEEEeecCCCChHHHHHHHHHHcCCeEEEEEecCCCC--hhcHHHHHHHHHHHhccCCCcEEEEEcCCcc
Q psy568 755 QPQGHLLLIGVSGAGKTTLSRFVAFMNGLSVFQIRAHNKYT--GADFDEDLRTVLRRSGCKNEKIAFLLDESNV 826 (1614)
Q Consensus 755 ~p~gh~LLvG~~GsGKtsl~rlaA~~~~~~~~~i~~~~~~~--~~df~~~lk~~l~~ag~~~~~~v~ll~d~~i 826 (1614)
.|..++||.||+|+|||++++.+|..++.+++.++.....+ ..+....++.++..+. ...+.++++||-+-
T Consensus 49 ~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~-~~~~~vl~iDEid~ 121 (322)
T 3eie_A 49 KPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMAR-ENKPSIIFIDQVDA 121 (322)
T ss_dssp CCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHTTTGGGHHHHHHHHHHHHH-HTSSEEEEEECGGG
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhhcccchHHHHHHHHHHHHH-hcCCeEEEechhhh
Confidence 45567999999999999999999999999999998653211 2344455666666553 44677888888543
No 150
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=96.86 E-value=0.0039 Score=74.80 Aligned_cols=129 Identities=15% Similarity=0.252 Sum_probs=77.5
Q ss_pred EEEeecCCCChHHHHHHHHHHcCC------------------------eEEEEEecCCCChhcHHHHHHHHHHHhccCCC
Q psy568 760 LLLIGVSGAGKTTLSRFVAFMNGL------------------------SVFQIRAHNKYTGADFDEDLRTVLRRSGCKNE 815 (1614)
Q Consensus 760 ~LLvG~~GsGKtsl~rlaA~~~~~------------------------~~~~i~~~~~~~~~df~~~lk~~l~~ag~~~~ 815 (1614)
++|.|++|+|||++++.+|...++ .++.+......+..++++-+ ..+......++
T Consensus 41 ~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~ 119 (373)
T 1jr3_A 41 YLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLL-DNVQYAPARGR 119 (373)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHTSCCSSCEEEETTCSCCSSCHHHHH-HHTTSCCSSSS
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhccCCCceEEecccccCCHHHHHHHH-HHHhhccccCC
Confidence 689999999999999988876543 24444433323333333322 11222224566
Q ss_pred cEEEEEcCCcccccchHHHHHHhhccCCCCCCCChhhHHHHHHHhHHHHHHcCCCCCCHHHHHHHHHHHHhhcceEEEEE
Q psy568 816 KIAFLLDESNVLESGFLERMNTLLANGEIPGLFEGDEYTTLMTQCKEGAQREGLMLDSNEELYKWFTQQVMKNLHVVFTM 895 (1614)
Q Consensus 816 ~~v~ll~d~~i~~~~~le~in~lL~~G~v~~Lf~~eE~~~i~~~~~~~~~~~~~~~~s~~~l~~~f~~rv~~nlhivl~~ 895 (1614)
+.++++||.+..++...+.+-.++ +....+..++++-
T Consensus 120 ~~vliiDe~~~l~~~~~~~Ll~~l-------------------------------------------e~~~~~~~~Il~~ 156 (373)
T 1jr3_A 120 FKVYLIDEVHMLSRHSFNALLKTL-------------------------------------------EEPPEHVKFLLAT 156 (373)
T ss_dssp SEEEEEECGGGSCHHHHHHHHHHH-------------------------------------------HSCCSSEEEEEEE
T ss_pred eEEEEEECcchhcHHHHHHHHHHH-------------------------------------------hcCCCceEEEEEe
Confidence 788888886654432222111111 1112256666665
Q ss_pred CCCChhhHHHhhhCccccccceecccCCCcHHHHHHHHHHhhcc
Q psy568 896 NPSSEGLKDRAATSPALFNRCVLNWFGDWSDTALYQVAKEFTSK 939 (1614)
Q Consensus 896 sp~~~~~r~~~~~~PaL~~~~~i~wf~~W~~eaL~~va~~~l~~ 939 (1614)
+... ...|++.++|.+.-|.+.+.+.+.....+.+..
T Consensus 157 ~~~~-------~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~ 193 (373)
T 1jr3_A 157 TDPQ-------KLPVTILSRCLQFHLKALDVEQIRHQLEHILNE 193 (373)
T ss_dssp SCGG-------GSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHH
T ss_pred CChH-------hCcHHHHhheeEeeCCCCCHHHHHHHHHHHHHH
Confidence 4321 236778888988889999999988888777654
No 151
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.83 E-value=0.0019 Score=72.17 Aligned_cols=132 Identities=11% Similarity=0.068 Sum_probs=76.9
Q ss_pred CCccEEEeecCCCChHHHHHHHHHHc---CCeEEEEEecCCCChhcHHHHHHHHHHHhccCCCcEEEEEcCCcccccchH
Q psy568 756 PQGHLLLIGVSGAGKTTLSRFVAFMN---GLSVFQIRAHNKYTGADFDEDLRTVLRRSGCKNEKIAFLLDESNVLESGFL 832 (1614)
Q Consensus 756 p~gh~LLvG~~GsGKtsl~rlaA~~~---~~~~~~i~~~~~~~~~df~~~lk~~l~~ag~~~~~~v~ll~d~~i~~~~~l 832 (1614)
+.++++|+|++|+|||++++.+|... +..+..++.... .+.+...+.. ..++.++++||.+.....-
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~---~~~~~vliiDe~~~~~~~~- 120 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIH------ASISTALLEG---LEQFDLICIDDVDAVAGHP- 120 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG------GGSCGGGGTT---GGGSSEEEEETGGGGTTCH-
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHH------HHHHHHHHHh---ccCCCEEEEeccccccCCH-
Confidence 45679999999999999999888654 466777765432 1111111111 1345677888754332110
Q ss_pred HHHHHhhccCCCCCCCChhhHHHHHHHhHHHHHHcCCCCCCHHHHHHHHHHHHhhcc-eEEEEECCCChhhHHHhhhCcc
Q psy568 833 ERMNTLLANGEIPGLFEGDEYTTLMTQCKEGAQREGLMLDSNEELYKWFTQQVMKNL-HVVFTMNPSSEGLKDRAATSPA 911 (1614)
Q Consensus 833 e~in~lL~~G~v~~Lf~~eE~~~i~~~~~~~~~~~~~~~~s~~~l~~~f~~rv~~nl-hivl~~sp~~~~~r~~~~~~Pa 911 (1614)
+.. +.++.++-.....+. .+|++.+.....+. ...|+
T Consensus 121 ------------------~~~---------------------~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~---~~~~~ 158 (242)
T 3bos_A 121 ------------------LWE---------------------EAIFDLYNRVAEQKRGSLIVSASASPMEAG---FVLPD 158 (242)
T ss_dssp ------------------HHH---------------------HHHHHHHHHHHHHCSCEEEEEESSCTTTTT---CCCHH
T ss_pred ------------------HHH---------------------HHHHHHHHHHHHcCCCeEEEEcCCCHHHHH---Hhhhh
Confidence 001 112222222222333 47776654332222 12477
Q ss_pred ccccc---eecccCCCcHHHHHHHHHHhhcc
Q psy568 912 LFNRC---VLNWFGDWSDTALYQVAKEFTSK 939 (1614)
Q Consensus 912 L~~~~---~i~wf~~W~~eaL~~va~~~l~~ 939 (1614)
+.++| .+..|.+++.+.+..+..+++..
T Consensus 159 l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~ 189 (242)
T 3bos_A 159 LVSRMHWGLTYQLQPMMDDEKLAALQRRAAM 189 (242)
T ss_dssp HHHHHHHSEEEECCCCCGGGHHHHHHHHHHH
T ss_pred hhhHhhcCceEEeCCCCHHHHHHHHHHHHHH
Confidence 88777 78889999999999888887764
No 152
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=96.82 E-value=0.0066 Score=74.51 Aligned_cols=71 Identities=21% Similarity=0.373 Sum_probs=46.5
Q ss_pred cCCccEEEeecCCCChHHHHHHHHHHc-CCeEEEEEecCCCCh--hcHHHHHHHHHHHhccCCCcEEEEEcCCcc
Q psy568 755 QPQGHLLLIGVSGAGKTTLSRFVAFMN-GLSVFQIRAHNKYTG--ADFDEDLRTVLRRSGCKNEKIAFLLDESNV 826 (1614)
Q Consensus 755 ~p~gh~LLvG~~GsGKtsl~rlaA~~~-~~~~~~i~~~~~~~~--~df~~~lk~~l~~ag~~~~~~v~ll~d~~i 826 (1614)
.|..++||.||+|+|||++++.+|..+ +.+++.++.+...+. .+....++.++..+. ...+.++++||-+-
T Consensus 165 ~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~-~~~~~vl~iDEid~ 238 (444)
T 2zan_A 165 TPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLAR-ENKPSIIFIDEIDS 238 (444)
T ss_dssp CCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC---------CCCTHHHHHHHHH-HSCSEEEEESCTTT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHhhhcchHHHHHHHHHHHHH-HcCCeEEEEechHh
Confidence 455679999999999999999999988 888888876543220 111112444454442 34678888887543
No 153
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.77 E-value=0.0039 Score=76.40 Aligned_cols=72 Identities=26% Similarity=0.407 Sum_probs=51.3
Q ss_pred ccCCccEEEeecCCCChHHHHHHHHHHcCCeEEEEEecCCCCh--hcHHHHHHHHHHHhccCCCcEEEEEcCCccc
Q psy568 754 RQPQGHLLLIGVSGAGKTTLSRFVAFMNGLSVFQIRAHNKYTG--ADFDEDLRTVLRRSGCKNEKIAFLLDESNVL 827 (1614)
Q Consensus 754 ~~p~gh~LLvG~~GsGKtsl~rlaA~~~~~~~~~i~~~~~~~~--~df~~~lk~~l~~ag~~~~~~v~ll~d~~i~ 827 (1614)
+.|+| +||+||+|+|||+++|.+|...+.+++.++.+..... ..-...++.++..+- .+.|.++++||-+-.
T Consensus 47 ~~p~g-vLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~~g~~~~~~r~lf~~A~-~~~p~ILfIDEid~l 120 (476)
T 2ce7_A 47 RMPKG-ILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELFVGVGAARVRDLFAQAK-AHAPCIVFIDEIDAV 120 (476)
T ss_dssp CCCSE-EEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCCTTHHHHHHHHHHHHHH-HTCSEEEEEETGGGT
T ss_pred CCCCe-EEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHHhcccHHHHHHHHHHHH-hcCCCEEEEechhhh
Confidence 45666 9999999999999999999999999999986543221 111233455555553 356888999886443
No 154
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.68 E-value=0.0053 Score=73.08 Aligned_cols=45 Identities=16% Similarity=0.296 Sum_probs=32.7
Q ss_pred hcceEEEEECCCChhhHHHhhhCccccccceecccCCCcHHHHHHHHHHhhc
Q psy568 887 KNLHVVFTMNPSSEGLKDRAATSPALFNRCVLNWFGDWSDTALYQVAKEFTS 938 (1614)
Q Consensus 887 ~nlhivl~~sp~~~~~r~~~~~~PaL~~~~~i~wf~~W~~eaL~~va~~~l~ 938 (1614)
.+..++++-+.... ..|++.++|.+.-|.+++.+.+.....+.+.
T Consensus 163 ~~~~~Il~t~~~~~-------l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~ 207 (354)
T 1sxj_E 163 KNIRLIMVCDSMSP-------IIAPIKSQCLLIRCPAPSDSEISTILSDVVT 207 (354)
T ss_dssp TTEEEEEEESCSCS-------SCHHHHTTSEEEECCCCCHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCHHH-------HHHHHHhhceEEecCCcCHHHHHHHHHHHHH
Confidence 45666666544321 3677889999889999999998887776654
No 155
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.66 E-value=0.0079 Score=72.36 Aligned_cols=38 Identities=21% Similarity=0.393 Sum_probs=31.7
Q ss_pred CCccEEEeecCCCChHHHHHHHHHHc------CCeEEEEEecCC
Q psy568 756 PQGHLLLIGVSGAGKTTLSRFVAFMN------GLSVFQIRAHNK 793 (1614)
Q Consensus 756 p~gh~LLvG~~GsGKtsl~rlaA~~~------~~~~~~i~~~~~ 793 (1614)
+.++++|+|++|+|||++++.++... +..++.++....
T Consensus 44 ~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~ 87 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQI 87 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCC
Confidence 45579999999999999999998876 888888876543
No 156
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.66 E-value=0.0057 Score=74.91 Aligned_cols=133 Identities=18% Similarity=0.253 Sum_probs=79.5
Q ss_pred ccEEEeecCCCChHHHHHHHHHHc-----CCeEEEEEecCCCChhcHHHHHHHHHHHhc-------cCCCcEEEEEcCCc
Q psy568 758 GHLLLIGVSGAGKTTLSRFVAFMN-----GLSVFQIRAHNKYTGADFDEDLRTVLRRSG-------CKNEKIAFLLDESN 825 (1614)
Q Consensus 758 gh~LLvG~~GsGKtsl~rlaA~~~-----~~~~~~i~~~~~~~~~df~~~lk~~l~~ag-------~~~~~~v~ll~d~~ 825 (1614)
.+++|+|++|+|||++++.+|... +..++.++.. +|..++...+.... ....+.++++||-+
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~ 204 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE------KFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQ 204 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHH------HHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGG
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHH------HHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcc
Confidence 579999999999999999999876 7778877643 34333333322211 11256688888865
Q ss_pred ccccchHHHHHHhhccCCCCCCCChhhHHHHHHHhHHHHHHcCCCCCCHHHHHHHHHHHHhhcceEEEEECCCChhhHHH
Q psy568 826 VLESGFLERMNTLLANGEIPGLFEGDEYTTLMTQCKEGAQREGLMLDSNEELYKWFTQQVMKNLHVVFTMNPSSEGLKDR 905 (1614)
Q Consensus 826 i~~~~~le~in~lL~~G~v~~Lf~~eE~~~i~~~~~~~~~~~~~~~~s~~~l~~~f~~rv~~nlhivl~~sp~~~~~r~~ 905 (1614)
..... ++ +.+.++..|-.....+..++++-+.....+
T Consensus 205 ~l~~~--------------------~~--------------------~q~~l~~~l~~l~~~~~~iIitt~~~~~~l--- 241 (440)
T 2z4s_A 205 FLIGK--------------------TG--------------------VQTELFHTFNELHDSGKQIVICSDREPQKL--- 241 (440)
T ss_dssp GGSSC--------------------HH--------------------HHHHHHHHHHHHHTTTCEEEEEESSCGGGC---
T ss_pred cccCC--------------------hH--------------------HHHHHHHHHHHHHHCCCeEEEEECCCHHHH---
Confidence 43210 00 112333334333445667777665322221
Q ss_pred hhhCccccccc---eecccCCCcHHHHHHHHHHhhcc
Q psy568 906 AATSPALFNRC---VLNWFGDWSDTALYQVAKEFTSK 939 (1614)
Q Consensus 906 ~~~~PaL~~~~---~i~wf~~W~~eaL~~va~~~l~~ 939 (1614)
....|.|.++| .+.-+.+.+.+.+..+..+.+..
T Consensus 242 ~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~ 278 (440)
T 2z4s_A 242 SEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEI 278 (440)
T ss_dssp SSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 12346666666 46678888888888888777653
No 157
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=96.65 E-value=0.005 Score=71.47 Aligned_cols=163 Identities=13% Similarity=0.180 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHhccCCccEEEeecCCCChHHHHHHHHHHc---CCeEEEEEecCCCChhcHHHHH--------------
Q psy568 741 EVLDHVLRIDRIFRQPQGHLLLIGVSGAGKTTLSRFVAFMN---GLSVFQIRAHNKYTGADFDEDL-------------- 803 (1614)
Q Consensus 741 ~~i~hi~ri~Ril~~p~gh~LLvG~~GsGKtsl~rlaA~~~---~~~~~~i~~~~~~~~~df~~~l-------------- 803 (1614)
.++..+.+..+.......++||.|++|+|||++++.++... +.+++.+++..... .-+...+
T Consensus 9 ~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~-~l~~~~lfg~~~g~~tg~~~~ 87 (304)
T 1ojl_A 9 PAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNE-SLLESELFGHEKGAFTGADKR 87 (304)
T ss_dssp HHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCH-HHHHHHHTCCCSSCCC---CC
T ss_pred HHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCCh-HHHHHHhcCccccccCchhhh
Confidence 34444444444444566789999999999999999999865 56788887654311 1111111
Q ss_pred -HHHHHHhccCCCcEEEEEcCCcccccchHHHHHHhhccCCCCCCCChhhHHHHHHHhHHHHHHcCCCCCCHHHHHHHHH
Q psy568 804 -RTVLRRSGCKNEKIAFLLDESNVLESGFLERMNTLLANGEIPGLFEGDEYTTLMTQCKEGAQREGLMLDSNEELYKWFT 882 (1614)
Q Consensus 804 -k~~l~~ag~~~~~~v~ll~d~~i~~~~~le~in~lL~~G~v~~Lf~~eE~~~i~~~~~~~~~~~~~~~~s~~~l~~~f~ 882 (1614)
...+..+ .+.++++||-+-........+..+|..+.+..+ |..
T Consensus 88 ~~g~~~~a----~~g~L~LDEi~~l~~~~q~~Ll~~l~~~~~~~~--------------------g~~------------ 131 (304)
T 1ojl_A 88 REGRFVEA----DGGTLFLDEIGDISPLMQVRLLRAIQEREVQRV--------------------GSN------------ 131 (304)
T ss_dssp CCCHHHHH----TTSEEEEESCTTCCHHHHHHHHHHHHSSBCCBT--------------------TBC------------
T ss_pred hcCHHHhc----CCCEEEEeccccCCHHHHHHHHHHHhcCEeeec--------------------CCc------------
Confidence 0111111 124677888777666666666666666543211 100
Q ss_pred HHHhhcceEEEEECCCChhhHHHhhhCcccccccee--cccCCCc--HHHHHHHHHHhhccc
Q psy568 883 QQVMKNLHVVFTMNPSSEGLKDRAATSPALFNRCVL--NWFGDWS--DTALYQVAKEFTSKI 940 (1614)
Q Consensus 883 ~rv~~nlhivl~~sp~~~~~r~~~~~~PaL~~~~~i--~wf~~W~--~eaL~~va~~~l~~~ 940 (1614)
..+..++.||++.++.-...-..-+.-|.|+.++.+ ..+.++. .+.+..++.+|+...
T Consensus 132 ~~~~~~~riI~atn~~l~~~v~~g~fr~~L~~Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~ 193 (304)
T 1ojl_A 132 QTISVDVRLIAATHRDLAEEVSAGRFRQDLYYRLNVVAIEMPSLRQRREDIPLLADHFLRRF 193 (304)
T ss_dssp CCCBCCCEEEEEESSCHHHHHHHTSSCHHHHHHHSSEEEECCCSGGGGGGHHHHHHHHHHHH
T ss_pred ccccCCeEEEEecCccHHHHHHhCCcHHHHHhhcCeeEEeccCHHHhHhhHHHHHHHHHHHH
Confidence 012346788888876422111111123556666532 3366666 467777788777643
No 158
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.63 E-value=0.0019 Score=76.86 Aligned_cols=71 Identities=18% Similarity=0.366 Sum_probs=50.3
Q ss_pred cCCccEEEeecCCCChHHHHHHHHHHcCCeEEEEEecCCCC--hhcHHHHHHHHHHHhccCCCcEEEEEcCCcc
Q psy568 755 QPQGHLLLIGVSGAGKTTLSRFVAFMNGLSVFQIRAHNKYT--GADFDEDLRTVLRRSGCKNEKIAFLLDESNV 826 (1614)
Q Consensus 755 ~p~gh~LLvG~~GsGKtsl~rlaA~~~~~~~~~i~~~~~~~--~~df~~~lk~~l~~ag~~~~~~v~ll~d~~i 826 (1614)
.|..++||+||+|+|||++++.+|..++.+++.++.....+ ..+....++.++..+. ...+.++++||-+.
T Consensus 82 ~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~-~~~~~vl~iDEid~ 154 (355)
T 2qp9_X 82 KPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMAR-ENKPSIIFIDQVDA 154 (355)
T ss_dssp CCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHSCC---CHHHHHHHHHHHH-HTSSEEEEEECGGG
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhhhhcchHHHHHHHHHHHHH-HcCCeEEEEechHh
Confidence 45567999999999999999999999999999987543211 1223344555555543 45678888988543
No 159
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.60 E-value=0.00065 Score=69.36 Aligned_cols=88 Identities=9% Similarity=0.114 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHhccCCccEEEeecCCCChHHHHHHHHHHcCCeEEEEEecCCCChhcHHHH-HHHHHHHhccCCCcEEE
Q psy568 741 EVLDHVLRIDRIFRQPQGHLLLIGVSGAGKTTLSRFVAFMNGLSVFQIRAHNKYTGADFDED-LRTVLRRSGCKNEKIAF 819 (1614)
Q Consensus 741 ~~i~hi~ri~Ril~~p~gh~LLvG~~GsGKtsl~rlaA~~~~~~~~~i~~~~~~~~~df~~~-lk~~l~~ag~~~~~~v~ 819 (1614)
.++..+.+..+.......|++|.|++|+|||++++.++...+ +++.++.. ++.++ .+..+..+. +.++
T Consensus 11 ~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~------~~~~~~~~~~~~~a~----~~~l 79 (143)
T 3co5_A 11 AAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARV------EYLIDMPMELLQKAE----GGVL 79 (143)
T ss_dssp HHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSST------THHHHCHHHHHHHTT----TSEE
T ss_pred HHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechh------hCChHhhhhHHHhCC----CCeE
Confidence 344444444333334556899999999999999999988776 66655433 22222 333444432 3467
Q ss_pred EEcCCcccccchHHHHHHhh
Q psy568 820 LLDESNVLESGFLERMNTLL 839 (1614)
Q Consensus 820 ll~d~~i~~~~~le~in~lL 839 (1614)
++||-+..++.....+..+|
T Consensus 80 ~lDei~~l~~~~q~~Ll~~l 99 (143)
T 3co5_A 80 YVGDIAQYSRNIQTGITFII 99 (143)
T ss_dssp EEEECTTCCHHHHHHHHHHH
T ss_pred EEeChHHCCHHHHHHHHHHH
Confidence 77887666555444444444
No 160
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.60 E-value=0.0027 Score=78.36 Aligned_cols=70 Identities=24% Similarity=0.227 Sum_probs=51.8
Q ss_pred cCCccEEEeecCCCChHHHHHHHHHHcC--CeEEEEEecCCCC--hhcHHHHHHHHHHHhc--cCCCcEEEEEcCCc
Q psy568 755 QPQGHLLLIGVSGAGKTTLSRFVAFMNG--LSVFQIRAHNKYT--GADFDEDLRTVLRRSG--CKNEKIAFLLDESN 825 (1614)
Q Consensus 755 ~p~gh~LLvG~~GsGKtsl~rlaA~~~~--~~~~~i~~~~~~~--~~df~~~lk~~l~~ag--~~~~~~v~ll~d~~ 825 (1614)
.|.+++||.||+|+|||++++.+|..++ .+++.++.+..++ ..+. +.++.++.++- ....|.++++||-+
T Consensus 61 ~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~f~~a~~~~~~~~~il~iDEid 136 (456)
T 2c9o_A 61 MAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKT-EVLMENFRRAIGLRIKETKEVYEGEVT 136 (456)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCCSSSCHH-HHHHHHHHHTEEEEEEEEEEEEEEEEE
T ss_pred CCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHHHhhhhh-HHHHHHHHHHHhhhhcCCcEEEEechh
Confidence 3556799999999999999999999998 8888888665443 1222 23777777772 34567888888753
No 161
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=96.57 E-value=0.0031 Score=80.75 Aligned_cols=165 Identities=16% Similarity=0.158 Sum_probs=94.8
Q ss_pred HHHHHHHhccEEEEecCCCCChhhHHHHHHHHHHHhhcC------------CceEE------------------------
Q psy568 35 QLYQISNLNHGLMMVGPSGSGKSTAWKVLLKALERYEGV------------EGVAH------------------------ 78 (1614)
Q Consensus 35 qL~e~~~~r~gVmlvG~~gsGKTt~~~~L~~al~~~~~~------------~~~~~------------------------ 78 (1614)
++...+...+.|+|+||+||||||+.+.+++.+...... ...+.
T Consensus 52 ~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~p~i~~~p~g~~~~~~e~~~~~~~~~~~~ 131 (604)
T 3k1j_A 52 VIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMPRIKTVPACQGRRIVEKYREKAKSQESV 131 (604)
T ss_dssp HHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTSCEEEEEETTHHHHHHHHHHHHHHHHTCC
T ss_pred hccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccCCcEEEEecchHHHHHHHHHHhhccchhh
Confidence 455667788999999999999999999999876321100 00000
Q ss_pred ---------------------------EeCCCCCCcCcccccccCCCCccccchHHHHHHH----HHhhhcCCCCCceEE
Q psy568 79 ---------------------------IIDPKAISKEALYGVLDPNTREWTDGLFTHILRR----IIDNVRGEISKRQWI 127 (1614)
Q Consensus 79 ---------------------------~inPkais~~eLyG~~d~~t~eW~DGvls~i~r~----~~~~~~~~~~~~~Wi 127 (1614)
++.....+..+|+|.++... .|..|..+...+. ... .....++
T Consensus 132 r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~-~~~g~~~~g~~~~i~~g~~~-----~a~~gvL 205 (604)
T 3k1j_A 132 KSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDP-FQSGGLGTPAHERVEPGMIH-----RAHKGVL 205 (604)
T ss_dssp -----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCC-C----CCCCGGGGEECCHHH-----HTTTSEE
T ss_pred hhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEech-hhcCCccccccccccCceee-----ecCCCEE
Confidence 01112345566788775332 2322211100000 000 0023699
Q ss_pred EEc--cCCChhhhhhhhhhhcCCCccccCCCc--------eeeCCCCceEEEEeccc--cccCccccccce----eEEec
Q psy568 128 IFD--GDVDPEWVENLNSVLDDNKLLTLPNGE--------RLSLPPNIRIMFEVQDL--KYATLATVSRCG----MIWFS 191 (1614)
Q Consensus 128 vfD--G~vd~~WiE~lnsvLDdnk~L~L~nGe--------ri~l~~~~~~iFEv~dL--~~ASPAtVSRcg----mv~~~ 191 (1614)
++| +-.++.--+.|..+|++.+.-....++ .-++|.++++|+-++.- ....|+..+||. .+.++
T Consensus 206 ~LDEi~~l~~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~vI~atn~~~~~~l~~~l~~R~~v~~i~i~l~ 285 (604)
T 3k1j_A 206 FIDEIATLSLKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLVAAGNLDTVDKMHPALRSRIRGYGYEVYMR 285 (604)
T ss_dssp EETTGGGSCHHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEEEEEECHHHHHHSCHHHHHHHHHHSEEEECC
T ss_pred EEechhhCCHHHHHHHHHHHHcCcEEecccccccccccCCCCccceeEEEEEecCHHHHhhcCHHHHHHhhccceEeecc
Confidence 999 567777778888999876544443322 34556789999988743 678999999995 45554
Q ss_pred CcccchHHHHHHHH
Q psy568 192 EDVLSTEMIFENYL 205 (1614)
Q Consensus 192 ~~~l~~~~~~~~~~ 205 (1614)
+..-.....+..++
T Consensus 286 ~~~~~~~~~~~~~l 299 (604)
T 3k1j_A 286 TTMPDTIENRRKLV 299 (604)
T ss_dssp SEEECCHHHHHHHH
T ss_pred ccccCCHHHHHHHH
Confidence 43222233344444
No 162
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.53 E-value=0.003 Score=78.02 Aligned_cols=68 Identities=29% Similarity=0.455 Sum_probs=50.1
Q ss_pred CCccEEEeecCCCChHHHHHHHHHHcCCeEEEEEecCCCC--hhcHHHHHHHHHHHhccCCCcEEEEEcCC
Q psy568 756 PQGHLLLIGVSGAGKTTLSRFVAFMNGLSVFQIRAHNKYT--GADFDEDLRTVLRRSGCKNEKIAFLLDES 824 (1614)
Q Consensus 756 p~gh~LLvG~~GsGKtsl~rlaA~~~~~~~~~i~~~~~~~--~~df~~~lk~~l~~ag~~~~~~v~ll~d~ 824 (1614)
+..++||.|++|+|||++++.+|..++.+++.++...-.+ ..+....++.++..+. .+.|.++++||-
T Consensus 237 ~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~~g~~~~~~~~~f~~A~-~~~p~iLfLDEI 306 (489)
T 3hu3_A 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAE-KNAPAIIFIDEL 306 (489)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSCTTHHHHHHHHHHHHHH-HTCSEEEEEESH
T ss_pred CCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhhcchhHHHHHHHHHHHH-hcCCcEEEecch
Confidence 3445999999999999999999999999999998543211 1334455677777663 455778888773
No 163
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.47 E-value=0.0023 Score=74.36 Aligned_cols=69 Identities=20% Similarity=0.354 Sum_probs=46.6
Q ss_pred cCCccEEEeecCCCChHHHHHHHHHHcCCeEEEEEecCCCC--hhcHHHHHHHHHHHhccCCCcEEEEEcCC
Q psy568 755 QPQGHLLLIGVSGAGKTTLSRFVAFMNGLSVFQIRAHNKYT--GADFDEDLRTVLRRSGCKNEKIAFLLDES 824 (1614)
Q Consensus 755 ~p~gh~LLvG~~GsGKtsl~rlaA~~~~~~~~~i~~~~~~~--~~df~~~lk~~l~~ag~~~~~~v~ll~d~ 824 (1614)
.|..++||+||+|+|||++++.+|..++.+++.++...-.+ ..+-...++.++..+. ...|.++++||-
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~~~g~~~~~~~~~f~~a~-~~~p~il~iDEi 117 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKAR-QAAPCVLFFDEL 117 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHHHHTTCTTHHHHHHHHHH-HTCSEEEEECST
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhhhcCchHHHHHHHHHHHH-hcCCeEEEEECh
Confidence 34456999999999999999999999999999886432110 0001123455555553 345788888874
No 164
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.46 E-value=0.0059 Score=75.29 Aligned_cols=70 Identities=24% Similarity=0.356 Sum_probs=48.9
Q ss_pred ccCCccEEEeecCCCChHHHHHHHHHHcCCeEEEEEecCCCC--hhcHHHHHHHHHHHhccCCCcEEEEEcCCc
Q psy568 754 RQPQGHLLLIGVSGAGKTTLSRFVAFMNGLSVFQIRAHNKYT--GADFDEDLRTVLRRSGCKNEKIAFLLDESN 825 (1614)
Q Consensus 754 ~~p~gh~LLvG~~GsGKtsl~rlaA~~~~~~~~~i~~~~~~~--~~df~~~lk~~l~~ag~~~~~~v~ll~d~~ 825 (1614)
+.|+| ++|+||+|+|||++++.+|...+..++.++...-.. .......++.++..+. ...|.++++|+-+
T Consensus 62 ~ip~G-vLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~-~~~p~il~IDEId 133 (499)
T 2dhr_A 62 RIPKG-VLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAK-RHAPCIVFIDEID 133 (499)
T ss_dssp CCCSE-EEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSCTTHHHHHHHHHTTTSS-SSSSCEEEEECGG
T ss_pred CCCce-EEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhhhhhHHHHHHHHHHHHH-hcCCCEEEEehHH
Confidence 45777 999999999999999999999999999887543221 1222334555555442 3356778888754
No 165
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.39 E-value=0.0051 Score=70.21 Aligned_cols=71 Identities=27% Similarity=0.486 Sum_probs=51.1
Q ss_pred hccCCccEEEeecCCCChHHHHHHHHHHcCCeEEEEEecCCCC--hhcHHHHHHHHHHHhccCCCcEEEEEcCCc
Q psy568 753 FRQPQGHLLLIGVSGAGKTTLSRFVAFMNGLSVFQIRAHNKYT--GADFDEDLRTVLRRSGCKNEKIAFLLDESN 825 (1614)
Q Consensus 753 l~~p~gh~LLvG~~GsGKtsl~rlaA~~~~~~~~~i~~~~~~~--~~df~~~lk~~l~~ag~~~~~~v~ll~d~~ 825 (1614)
+..|+| ++|+||+|||||++++.+|...+..++.+....-.+ ..+....++.++..+. ...|.++++|+-.
T Consensus 41 l~~~~G-vlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~-~~~p~i~~~Deid 113 (274)
T 2x8a_A 41 LVTPAG-VLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQVFQRAK-NSAPCVIFFDEVD 113 (274)
T ss_dssp CCCCSE-EEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSSTTHHHHHHHHHHHHHHH-HTCSEEEEEETCT
T ss_pred CCCCCe-EEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhhhhhHHHHHHHHHHHHHH-hcCCCeEeeehhh
Confidence 456777 999999999999999999999999888876543322 2334455666776652 2356777777654
No 166
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.32 E-value=0.0058 Score=65.04 Aligned_cols=26 Identities=23% Similarity=0.381 Sum_probs=23.3
Q ss_pred hccEEEEecCCCCChhhHHHHHHHHH
Q psy568 42 LNHGLMMVGPSGSGKSTAWKVLLKAL 67 (1614)
Q Consensus 42 ~r~gVmlvG~~gsGKTt~~~~L~~al 67 (1614)
-++++++.||||+|||+....|++.+
T Consensus 57 kkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 57 KKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp TCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred cccEEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999998886
No 167
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.27 E-value=0.0027 Score=72.65 Aligned_cols=35 Identities=17% Similarity=0.047 Sum_probs=26.0
Q ss_pred cCCCEEEecCCCCchHHHHHHHHhcCCCCceEEEEc
Q psy568 415 EHKPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNF 450 (1614)
Q Consensus 415 ~~~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~ 450 (1614)
.|.-++|+||||||||+++.+++.. .+..+..+.+
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~~-~G~~VlyIs~ 156 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGEA-LGGKDKYATV 156 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHHH-HHTTSCCEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHh-CCCCEEEEEe
Confidence 3556899999999999999999876 3444444444
No 168
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.26 E-value=0.0072 Score=64.13 Aligned_cols=63 Identities=19% Similarity=0.237 Sum_probs=40.6
Q ss_pred CccEEEeecCCCChHHHHHHHHHHc----CCeEEEEEecCCCChhcHHHHHHHHHHHhccC------CCcEEEEEcCCc
Q psy568 757 QGHLLLIGVSGAGKTTLSRFVAFMN----GLSVFQIRAHNKYTGADFDEDLRTVLRRSGCK------NEKIAFLLDESN 825 (1614)
Q Consensus 757 ~gh~LLvG~~GsGKtsl~rlaA~~~----~~~~~~i~~~~~~~~~df~~~lk~~l~~ag~~------~~~~v~ll~d~~ 825 (1614)
+.+++|+||+|+|||++++.+|... |..+..++ ..++.+.++..+...... .++-++++||..
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDE~~ 110 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFD------TKDLIFRLKHLMDEGKDTKFLKTVLNSPVLVLDDLG 110 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEE------HHHHHHHHHHHHHHTCCSHHHHHHHTCSEEEEETCS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEE------HHHHHHHHHHHhcCchHHHHHHHhcCCCEEEEeCCC
Confidence 4568999999999999999888664 65555543 345555555443322111 135678888864
No 169
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.26 E-value=0.013 Score=69.05 Aligned_cols=127 Identities=20% Similarity=0.263 Sum_probs=71.3
Q ss_pred HHHHHHhccE-EEEecCCCCChhhHHHHHHHHHHHhhcCCceEEEeCCCCCCcCcccccccCC-CCccccchHHHHHHHH
Q psy568 36 LYQISNLNHG-LMMVGPSGSGKSTAWKVLLKALERYEGVEGVAHIIDPKAISKEALYGVLDPN-TREWTDGLFTHILRRI 113 (1614)
Q Consensus 36 L~e~~~~r~g-VmlvG~~gsGKTt~~~~L~~al~~~~~~~~~~~~inPkais~~eLyG~~d~~-t~eW~DGvls~i~r~~ 113 (1614)
|.+......| |.|+||+||||||+++++.+.+..-.+ ..+..+-+|-.+....--+.+... .+.... -+...++.+
T Consensus 115 l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~-~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~-~~~~~La~a 192 (356)
T 3jvv_A 115 FKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKY-HHILTIEDPIEFVHESKKCLVNQREVHRDTL-GFSEALRSA 192 (356)
T ss_dssp HHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCC-CEEEEEESSCCSCCCCSSSEEEEEEBTTTBS-CHHHHHHHH
T ss_pred HHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCC-cEEEEccCcHHhhhhccccceeeeeeccccC-CHHHHHHHH
Confidence 3444555555 789999999999999999998876422 122333344443332222222110 000111 233344444
Q ss_pred HhhhcCCCCCceEEEEccCCChhhhhhhhhhhcCCCccccCCCceeeCCCCceEEEEeccccccCccccccceeE
Q psy568 114 IDNVRGEISKRQWIIFDGDVDPEWVENLNSVLDDNKLLTLPNGERLSLPPNIRIMFEVQDLKYATLATVSRCGMI 188 (1614)
Q Consensus 114 ~~~~~~~~~~~~WivfDG~vd~~WiE~lnsvLDdnk~L~L~nGeri~l~~~~~~iFEv~dL~~ASPAtVSRcgmv 188 (1614)
.. ..+.+|++|=|-|++-++.+-.... ....+++-+++.+.+ .++.|.-.+
T Consensus 193 L~------~~PdvillDEp~d~e~~~~~~~~~~----------------~G~~vl~t~H~~~~~--~~~dRli~l 243 (356)
T 3jvv_A 193 LR------EDPDIILVGEMRDLETIRLALTAAE----------------TGHLVFGTLHTTSAA--KTIDRVVDV 243 (356)
T ss_dssp TT------SCCSEEEESCCCSHHHHHHHHHHHH----------------TTCEEEEEESCSSHH--HHHHHHHHT
T ss_pred hh------hCcCEEecCCCCCHHHHHHHHHHHh----------------cCCEEEEEEccChHH--HHHHHHhhh
Confidence 21 2468999999999776665433311 123467777777655 567776443
No 170
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.22 E-value=0.0091 Score=67.92 Aligned_cols=25 Identities=32% Similarity=0.622 Sum_probs=23.1
Q ss_pred ccEEEEecCCCCChhhHHHHHHHHH
Q psy568 43 NHGLMMVGPSGSGKSTAWKVLLKAL 67 (1614)
Q Consensus 43 r~gVmlvG~~gsGKTt~~~~L~~al 67 (1614)
.+||+|+||||||||++.+.+++.+
T Consensus 44 ~~~vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHHHHh
Confidence 5789999999999999999999875
No 171
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=96.12 E-value=0.02 Score=66.11 Aligned_cols=131 Identities=18% Similarity=0.208 Sum_probs=79.8
Q ss_pred ccEEEEecCCCCChhhHHHHHHHHHHHhhcCCceEEEeCCCCCCcCcccccccCCCCccccch--HHHHHHHHHhhhcCC
Q psy568 43 NHGLMMVGPSGSGKSTAWKVLLKALERYEGVEGVAHIIDPKAISKEALYGVLDPNTREWTDGL--FTHILRRIIDNVRGE 120 (1614)
Q Consensus 43 r~gVmlvG~~gsGKTt~~~~L~~al~~~~~~~~~~~~inPkais~~eLyG~~d~~t~eW~DGv--ls~i~r~~~~~~~~~ 120 (1614)
.|..++.||+|+|||++.+.+++.+..+.........++|.. . .-|+ +-.++..+.. ...
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~--------------~--~~~id~ir~li~~~~~--~p~ 79 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEG--------------E--NIGIDDIRTIKDFLNY--SPE 79 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSS--------------S--CBCHHHHHHHHHHHTS--CCS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCc--------------C--CCCHHHHHHHHHHHhh--ccc
Confidence 478999999999999999999987543321112234455431 0 0121 2233333311 111
Q ss_pred CCCceEEEEccCCChhhhhhhhhhhcCCCccccCCCceeeCCCCceEEEEeccccccCccccccceeEEecCcccchHHH
Q psy568 121 ISKRQWIIFDGDVDPEWVENLNSVLDDNKLLTLPNGERLSLPPNIRIMFEVQDLKYATLATVSRCGMIWFSEDVLSTEMI 200 (1614)
Q Consensus 121 ~~~~~WivfDG~vd~~WiE~lnsvLDdnk~L~L~nGeri~l~~~~~~iFEv~dL~~ASPAtVSRcgmv~~~~~~l~~~~~ 200 (1614)
...++.+|+|. +|..=-+..|.+| |.|- ..|+++.|||-+++....-|+..|| ++.+.+-. ..-
T Consensus 80 ~~~~kvviIde-ad~lt~~a~naLL---k~LE-------ep~~~t~fIl~t~~~~kl~~tI~SR--~~~f~~l~---~~~ 143 (305)
T 2gno_A 80 LYTRKYVIVHD-CERMTQQAANAFL---KALE-------EPPEYAVIVLNTRRWHYLLPTIKSR--VFRVVVNV---PKE 143 (305)
T ss_dssp SSSSEEEEETT-GGGBCHHHHHHTH---HHHH-------SCCTTEEEEEEESCGGGSCHHHHTT--SEEEECCC---CHH
T ss_pred cCCceEEEecc-HHHhCHHHHHHHH---HHHh-------CCCCCeEEEEEECChHhChHHHHce--eEeCCCCC---HHH
Confidence 23578899997 3333334455555 2221 1357899999999999999999999 78887643 234
Q ss_pred HHHHHHh
Q psy568 201 FENYLSR 207 (1614)
Q Consensus 201 ~~~~~~~ 207 (1614)
+..|+.+
T Consensus 144 i~~~L~~ 150 (305)
T 2gno_A 144 FRDLVKE 150 (305)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5567754
No 172
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.01 E-value=0.023 Score=68.31 Aligned_cols=153 Identities=16% Similarity=0.242 Sum_probs=80.9
Q ss_pred CccEEEeecCCCChHHHHHHHHHHc-----------CCeEEEEEecCCC-ChhcHHHHHHHHHHHhccCCCcEEEEEcCC
Q psy568 757 QGHLLLIGVSGAGKTTLSRFVAFMN-----------GLSVFQIRAHNKY-TGADFDEDLRTVLRRSGCKNEKIAFLLDES 824 (1614)
Q Consensus 757 ~gh~LLvG~~GsGKtsl~rlaA~~~-----------~~~~~~i~~~~~~-~~~df~~~lk~~l~~ag~~~~~~v~ll~d~ 824 (1614)
.++++|+|++|+|||++++.++... +..++.++..... +..++...+-..+. |... ...
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~--~~~~-------~~~ 115 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAGKLT--GFSV-------PKH 115 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHHHHHHHHHHH--CSCC-------CSS
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHHHHHHHHHhc--CCCC-------CCC
Confidence 4479999999999999999998876 8889988876544 43333322211111 1100 000
Q ss_pred cccccchHHHHHHhhccCCCCCCCChhhHHHHHHHhHHHHHHcCCCCCCHHH-HHHHHHHHHhhcceEEEEECCCChhhH
Q psy568 825 NVLESGFLERMNTLLANGEIPGLFEGDEYTTLMTQCKEGAQREGLMLDSNEE-LYKWFTQQVMKNLHVVFTMNPSSEGLK 903 (1614)
Q Consensus 825 ~i~~~~~le~in~lL~~G~v~~Lf~~eE~~~i~~~~~~~~~~~~~~~~s~~~-l~~~f~~rv~~nlhivl~~sp~~~~~r 903 (1614)
.......++.+...+..... ++--||.+.+... ...+. ++..+ +.. .++.+|++.+... +.
T Consensus 116 ~~~~~~~~~~l~~~l~~~~~--vlilDEi~~l~~~------------~~~~~~l~~l~-~~~-~~~~iI~~t~~~~--~~ 177 (384)
T 2qby_B 116 GINLGEYIDKIKNGTRNIRA--IIYLDEVDTLVKR------------RGGDIVLYQLL-RSD-ANISVIMISNDIN--VR 177 (384)
T ss_dssp SSCTHHHHHHHHHHHSSSCE--EEEEETTHHHHHS------------TTSHHHHHHHH-TSS-SCEEEEEECSSTT--TT
T ss_pred CCCHHHHHHHHHHHhccCCC--EEEEECHHHhccC------------CCCceeHHHHh-cCC-cceEEEEEECCCc--hH
Confidence 00112233333333333221 3333444443220 00111 11111 111 5777777766432 11
Q ss_pred HHhhhCcccccc-ceecccCCCcHHHHHHHHHHhhc
Q psy568 904 DRAATSPALFNR-CVLNWFGDWSDTALYQVAKEFTS 938 (1614)
Q Consensus 904 ~~~~~~PaL~~~-~~i~wf~~W~~eaL~~va~~~l~ 938 (1614)
. +..|++.++ |....|.+++.+.+..+....+.
T Consensus 178 ~--~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~ 211 (384)
T 2qby_B 178 D--YMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAE 211 (384)
T ss_dssp T--TSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHH
T ss_pred h--hhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHH
Confidence 1 235566555 45778999999999998888765
No 173
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.01 E-value=0.015 Score=65.61 Aligned_cols=70 Identities=24% Similarity=0.329 Sum_probs=47.5
Q ss_pred hccCCccEEEeecCCCChHHHHHHHHHHcCCeEEEEEecCC--CChhcHHHHHHHHHHHhccCCCcEEEEEcCC
Q psy568 753 FRQPQGHLLLIGVSGAGKTTLSRFVAFMNGLSVFQIRAHNK--YTGADFDEDLRTVLRRSGCKNEKIAFLLDES 824 (1614)
Q Consensus 753 l~~p~gh~LLvG~~GsGKtsl~rlaA~~~~~~~~~i~~~~~--~~~~df~~~lk~~l~~ag~~~~~~v~ll~d~ 824 (1614)
++.|+| ++|+||+|+|||++++.+|...+..++.+....- ....+....++.++..+. ...+.++++|+-
T Consensus 46 ~~~~~g-~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~i~~~Dei 117 (254)
T 1ixz_A 46 ARIPKG-VLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAK-RHAPCIVFIDEI 117 (254)
T ss_dssp CCCCSE-EEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSCTTHHHHHHHHHHHHHT-TSSSEEEEEETH
T ss_pred CCCCCe-EEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHHHHhhHHHHHHHHHHHHHH-hcCCeEEEehhh
Confidence 345777 9999999999999999999998888877763211 011223344566666653 234667777763
No 174
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=95.97 E-value=0.03 Score=65.90 Aligned_cols=78 Identities=22% Similarity=0.270 Sum_probs=48.0
Q ss_pred CCccEEEeecCCCChHHHHHHHHHHcCCeEEEEEecCCCChhcHHHHHHHHHHHhccCCCcEEEEEcCCcccccchHHHH
Q psy568 756 PQGHLLLIGVSGAGKTTLSRFVAFMNGLSVFQIRAHNKYTGADFDEDLRTVLRRSGCKNEKIAFLLDESNVLESGFLERM 835 (1614)
Q Consensus 756 p~gh~LLvG~~GsGKtsl~rlaA~~~~~~~~~i~~~~~~~~~df~~~lk~~l~~ag~~~~~~v~ll~d~~i~~~~~le~i 835 (1614)
+..|++|+||+|+||||+++.+|...+.++....-.-.... .++..++... ..+.++++|+.+-..+...|.+
T Consensus 50 ~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~----~~l~~~~~~~---~~~~v~~iDE~~~l~~~~~e~L 122 (334)
T 1in4_A 50 VLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ----GDMAAILTSL---ERGDVLFIDEIHRLNKAVEELL 122 (334)
T ss_dssp CCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSH----HHHHHHHHHC---CTTCEEEEETGGGCCHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCH----HHHHHHHHHc---cCCCEEEEcchhhcCHHHHHHH
Confidence 44789999999999999999999999887765432222222 2344433321 2334666777655444444444
Q ss_pred HHhhc
Q psy568 836 NTLLA 840 (1614)
Q Consensus 836 n~lL~ 840 (1614)
...+.
T Consensus 123 ~~~~~ 127 (334)
T 1in4_A 123 YSAIE 127 (334)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 33343
No 175
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.86 E-value=0.0058 Score=69.25 Aligned_cols=89 Identities=22% Similarity=0.373 Sum_probs=48.8
Q ss_pred cEEEEecCCCCChhhHHHHHHHHHHHhhcCCceEEEeCCCCCCcCcccccccCCCCccccchHHHHHHHHHhhhcCCCCC
Q psy568 44 HGLMMVGPSGSGKSTAWKVLLKALERYEGVEGVAHIIDPKAISKEALYGVLDPNTREWTDGLFTHILRRIIDNVRGEISK 123 (1614)
Q Consensus 44 ~gVmlvG~~gsGKTt~~~~L~~al~~~~~~~~~~~~inPkais~~eLyG~~d~~t~eW~DGvls~i~r~~~~~~~~~~~~ 123 (1614)
.-|+|+|+|||||||+.+.|++.+... |.. ..+++...+ ...++| +++....| +..+.+..+... ...
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~~~-g~~--~i~~~~D~~-~~~l~~-~~~~~e~~----~~~~~~~~i~~~---l~~ 72 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILSKN-NID--VIVLGSDLI-RESFPV-WKEKYEEF----IKKSTYRLIDSA---LKN 72 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHT-TCC--EEEECTHHH-HTTSSS-CCGGGHHH----HHHHHHHHHHHH---HTT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhC-CCE--EEEECchHH-HHHHhh-hhHHHHHH----HHHHHHHHHHHH---hhC
Confidence 358999999999999999999998654 322 222343222 123444 33221111 222222222111 112
Q ss_pred ceEEEEcc-CCChhhhhhhhhhh
Q psy568 124 RQWIIFDG-DVDPEWVENLNSVL 145 (1614)
Q Consensus 124 ~~WivfDG-~vd~~WiE~lnsvL 145 (1614)
.++|+|| +....|.+.+....
T Consensus 73 -~~vIiD~~~~~~~~~~~l~~~a 94 (260)
T 3a4m_A 73 -YWVIVDDTNYYNSMRRDLINIA 94 (260)
T ss_dssp -SEEEECSCCCSHHHHHHHHHHH
T ss_pred -CEEEEeCCcccHHHHHHHHHHH
Confidence 7889997 44566776666544
No 176
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=95.86 E-value=0.01 Score=63.87 Aligned_cols=22 Identities=36% Similarity=0.702 Sum_probs=18.0
Q ss_pred CEEEecCCCCchHHHHHHHHhc
Q psy568 418 PLVLCGPPGSGKTMTLLSALRA 439 (1614)
Q Consensus 418 ~vLL~Gp~GtGKT~lv~~~~~~ 439 (1614)
-.|++|+||+|||+.+...+..
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 4689999999999998776543
No 177
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.81 E-value=0.013 Score=59.99 Aligned_cols=59 Identities=22% Similarity=0.175 Sum_probs=40.5
Q ss_pred CCccEEEeecCCCChHHHHHHHHHHc---CCeEEEEEecCCCChhcHHHHHHHHHHHhccCCCcEEEEEcCCcccc
Q psy568 756 PQGHLLLIGVSGAGKTTLSRFVAFMN---GLSVFQIRAHNKYTGADFDEDLRTVLRRSGCKNEKIAFLLDESNVLE 828 (1614)
Q Consensus 756 p~gh~LLvG~~GsGKtsl~rlaA~~~---~~~~~~i~~~~~~~~~df~~~lk~~l~~ag~~~~~~v~ll~d~~i~~ 828 (1614)
++..++|+|++|+|||++++.++... |.....+........ + ...++-++++||.+..+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~-~-------------~~~~~~lLilDE~~~~~ 96 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT-D-------------AAFEAEYLAVDQVEKLG 96 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC-G-------------GGGGCSEEEEESTTCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH-H-------------HHhCCCEEEEeCccccC
Confidence 56679999999999999999999776 666776654332221 1 11245577888865543
No 178
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=95.80 E-value=0.019 Score=65.63 Aligned_cols=70 Identities=24% Similarity=0.329 Sum_probs=47.0
Q ss_pred hccCCccEEEeecCCCChHHHHHHHHHHcCCeEEEEEecCC--CChhcHHHHHHHHHHHhccCCCcEEEEEcCC
Q psy568 753 FRQPQGHLLLIGVSGAGKTTLSRFVAFMNGLSVFQIRAHNK--YTGADFDEDLRTVLRRSGCKNEKIAFLLDES 824 (1614)
Q Consensus 753 l~~p~gh~LLvG~~GsGKtsl~rlaA~~~~~~~~~i~~~~~--~~~~df~~~lk~~l~~ag~~~~~~v~ll~d~ 824 (1614)
+..|.| ++|+||+|+|||++++.+|...+..++.+....- ....+....+..++..+. ...+.++++|+-
T Consensus 70 ~~~~~g-vll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~i~~iDei 141 (278)
T 1iy2_A 70 ARIPKG-VLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAK-RHAPCIVFIDEI 141 (278)
T ss_dssp CCCCCE-EEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSTTTHHHHHHHHHHHHHH-TSCSEEEEEETH
T ss_pred CCCCCe-EEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHHHHhhHHHHHHHHHHHHHH-hcCCcEEehhhh
Confidence 345777 9999999999999999999998888877753211 011223344556666653 234667777663
No 179
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=95.59 E-value=0.034 Score=76.58 Aligned_cols=27 Identities=26% Similarity=0.443 Sum_probs=22.9
Q ss_pred hcCCCEEEecCCCCchHHHHHHHHhcC
Q psy568 414 AEHKPLVLCGPPGSGKTMTLLSALRAL 440 (1614)
Q Consensus 414 ~~~~~vLL~Gp~GtGKT~lv~~~~~~l 440 (1614)
..++.|++.|++|+|||...+.+++.+
T Consensus 167 ~~~Q~i~isGeSGaGKTe~~k~~~~yl 193 (1184)
T 1i84_S 167 REDQSILCTGESGAGKTENTKKVIQYL 193 (1184)
T ss_dssp TCCEEEECCCSTTSSTTHHHHHHHHHH
T ss_pred CCCcEEEEecCCCCCccHHHHHHHHHH
Confidence 457889999999999999988877654
No 180
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.57 E-value=0.0076 Score=65.74 Aligned_cols=26 Identities=31% Similarity=0.300 Sum_probs=23.2
Q ss_pred cEEEEecCCCCChhhHHHHHHHHHHH
Q psy568 44 HGLMMVGPSGSGKSTAWKVLLKALER 69 (1614)
Q Consensus 44 ~gVmlvG~~gsGKTt~~~~L~~al~~ 69 (1614)
.-|+|.|++||||||+.+.|++.+..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 45899999999999999999998754
No 181
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=95.08 E-value=0.054 Score=74.52 Aligned_cols=17 Identities=18% Similarity=0.309 Sum_probs=11.0
Q ss_pred hhcHHHHHHHHHHHhcc
Q psy568 796 GADFDEDLRTVLRRSGC 812 (1614)
Q Consensus 796 ~~df~~~lk~~l~~ag~ 812 (1614)
.+.|+..|..++..-..
T Consensus 659 ~~~f~~~l~~L~~~l~~ 675 (1184)
T 1i84_S 659 GQLYKEQLTKLMTTLRN 675 (1184)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 35677777777665543
No 182
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.05 E-value=0.024 Score=60.32 Aligned_cols=95 Identities=19% Similarity=0.207 Sum_probs=47.4
Q ss_pred CCCEEEecCCCCchHHHHHHHHhcC--CCCceEEEEcccCCCH--HHHHhHhhcccc-eeecCCccccccccCCceEEEE
Q psy568 416 HKPLVLCGPPGSGKTMTLLSALRAL--PDMEVVSLNFSSATTP--ELLLKTFDHYCE-YRKTPNGVILSPIQLGKWLVLF 490 (1614)
Q Consensus 416 ~~~vLL~Gp~GtGKT~lv~~~~~~l--~~~~~~~i~~s~~t~~--~~l~~~~~~~~~-~~~~~~g~~~~p~~~gk~~vlf 490 (1614)
|.-++++||+|+|||+++..++... .+..+..+.+...+.. ..+...+..... ........+..-.. +..-+++
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~d~r~~~~~i~s~~g~~~~~~~~~~~~~~~~~~~-~~~dvvi 81 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKIDSRYHSTMIVSHSGNGVEAHVIERPEEMRKYIE-EDTRGVF 81 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC-----CCCEECC----CEECEEESSGGGGGGGCC-TTEEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeeccccccCcccEEecCCCceeeEEECCHHHHHHHhc-CCCCEEE
Confidence 4557899999999999987777543 3444544443321110 000000000000 00000001111111 3456888
Q ss_pred eccCCCCCccccCcccHHHHHHHHHHc
Q psy568 491 CDEINLPDMDKYATQRVISFLRQLIEQ 517 (1614)
Q Consensus 491 iDdin~p~~d~~g~q~~lelLrqlld~ 517 (1614)
|||++.-. ...++.|+.+.+.
T Consensus 82 IDE~Q~~~------~~~~~~l~~l~~~ 102 (184)
T 2orw_A 82 IDEVQFFN------PSLFEVVKDLLDR 102 (184)
T ss_dssp ECCGGGSC------TTHHHHHHHHHHT
T ss_pred EECcccCC------HHHHHHHHHHHHC
Confidence 99999832 3477888888775
No 183
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.02 E-value=0.05 Score=61.32 Aligned_cols=26 Identities=31% Similarity=0.595 Sum_probs=23.2
Q ss_pred EEEEecCCCCChhhHHHHHHHHHHHh
Q psy568 45 GLMMVGPSGSGKSTAWKVLLKALERY 70 (1614)
Q Consensus 45 gVmlvG~~gsGKTt~~~~L~~al~~~ 70 (1614)
-|.|+||+||||||+++.|.+.+...
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g~~~~~ 52 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMIDYINQT 52 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHHhCCCC
Confidence 48899999999999999999988653
No 184
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.89 E-value=0.014 Score=62.06 Aligned_cols=27 Identities=37% Similarity=0.812 Sum_probs=24.0
Q ss_pred CCCEEEecCCCCchHHHHHHHHhcCCC
Q psy568 416 HKPLVLCGPPGSGKTMTLLSALRALPD 442 (1614)
Q Consensus 416 ~~~vLL~Gp~GtGKT~lv~~~~~~l~~ 442 (1614)
.+||+|+||+|+|||++++.+++..++
T Consensus 1 ~RpIVi~GPSG~GK~Tl~~~L~~~~~~ 27 (186)
T 1ex7_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCCC
Confidence 379999999999999999999987754
No 185
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=94.84 E-value=0.032 Score=67.34 Aligned_cols=37 Identities=27% Similarity=0.507 Sum_probs=33.3
Q ss_pred CCccEEEeecCCCChHHHHHHHHHHcCCeEEEEEecC
Q psy568 756 PQGHLLLIGVSGAGKTTLSRFVAFMNGLSVFQIRAHN 792 (1614)
Q Consensus 756 p~gh~LLvG~~GsGKtsl~rlaA~~~~~~~~~i~~~~ 792 (1614)
+.+|+||+||+|+|||++++.+|..++.+++.++.+.
T Consensus 49 ~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~ 85 (444)
T 1g41_A 49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATK 85 (444)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchh
Confidence 4567999999999999999999999999999988643
No 186
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=94.69 E-value=0.081 Score=56.84 Aligned_cols=111 Identities=21% Similarity=0.322 Sum_probs=58.6
Q ss_pred EEEecCCCCChhhHHHHHHHHHHHhhcCCceEEEeCCCCCCcCcccccc--cCCCCccccchHHHHHHHHH-hhhcCCCC
Q psy568 46 LMMVGPSGSGKSTAWKVLLKALERYEGVEGVAHIIDPKAISKEALYGVL--DPNTREWTDGLFTHILRRII-DNVRGEIS 122 (1614)
Q Consensus 46 VmlvG~~gsGKTt~~~~L~~al~~~~~~~~~~~~inPkais~~eLyG~~--d~~t~eW~DGvls~i~r~~~-~~~~~~~~ 122 (1614)
|.+-|+.||||||..+.|++.|... |.++ ..+=.|..-...+..-.+ +.....+..-++-.+-|.-. ........
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~~-g~~v-~~treP~~t~~~~~ir~~l~~~~~~~~~~~ll~~a~r~~~~~~I~~~L~ 80 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEKR-GKKV-ILKREPGGTETGEKIRKILLEEEVTPKAELFLFLASRNLLVTEIKQYLS 80 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHT-TCCE-EEEESSCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC-CCcE-EEEECCCCCcHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567999999999999999999875 4443 333455432222221110 11111122222222222110 00001122
Q ss_pred CceEEEEcc-------------CCChhhhhhhhhhhcCCCccccCCCceeeCCCCceEEEE
Q psy568 123 KRQWIIFDG-------------DVDPEWVENLNSVLDDNKLLTLPNGERLSLPPNIRIMFE 170 (1614)
Q Consensus 123 ~~~WivfDG-------------~vd~~WiE~lnsvLDdnk~L~L~nGeri~l~~~~~~iFE 170 (1614)
..+|+|+|- ..+..|++.||.....+ +.|...+++.
T Consensus 81 ~g~~Vi~DRy~~S~~ayq~~~~~~~~~~i~~l~~~~~~~------------~~PDl~i~Ld 129 (197)
T 3hjn_A 81 EGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDG------------LIPDLTFYID 129 (197)
T ss_dssp TTCEEEEESCHHHHHHHHTTTTCSCHHHHHHHHHHHHTT------------CCCSEEEEEE
T ss_pred CCCeEEecccchHHHHHHHhccCCCHHHHHHHHhhhhcC------------CCCCceeecC
Confidence 348999993 45778888888655332 3567777773
No 187
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=94.66 E-value=0.031 Score=61.75 Aligned_cols=101 Identities=20% Similarity=0.423 Sum_probs=56.8
Q ss_pred ccEEEEecCCCCChhhHHHHHHHHHHHhhcCCceEEEeCCCCCCcCccc-ccc--cCCCCcc---ccchHHHHHHHH-Hh
Q psy568 43 NHGLMMVGPSGSGKSTAWKVLLKALERYEGVEGVAHIIDPKAISKEALY-GVL--DPNTREW---TDGLFTHILRRI-ID 115 (1614)
Q Consensus 43 r~gVmlvG~~gsGKTt~~~~L~~al~~~~~~~~~~~~inPkais~~eLy-G~~--d~~t~eW---~DGvls~i~r~~-~~ 115 (1614)
..=|++.|++||||||..+.|++.+... +.+....+=.|..-...+.+ +.+ ++...+| +..++=.+-|.. ..
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~-~~~~~~~~rep~~t~~g~~ir~~l~~~~~~~~~~~~~e~lLf~A~R~~~~~ 105 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQN-GIDHITRTREPGGTLLAEKLRALVKEEHPGEELQDITELLLVYAARVQLVE 105 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHT-TCCCEEEEESSCSSHHHHHHHHHHHSCCTTSCCCHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhc-CCCeeeeecCCCCCHHHHHHHHHHhhCCCcccCCHHHHHHHHHHHHHHHHH
Confidence 3458889999999999999999999765 55533344466543333322 222 2222233 233222222321 00
Q ss_pred -hhcCCCCCceEEEEc----------c---CCChhhhhhhhhh
Q psy568 116 -NVRGEISKRQWIIFD----------G---DVDPEWVENLNSV 144 (1614)
Q Consensus 116 -~~~~~~~~~~WivfD----------G---~vd~~WiE~lnsv 144 (1614)
.........+|+|+| | .+|..|++.+|..
T Consensus 106 ~~I~paL~~g~~VI~DRy~~S~~AYq~~~rgl~~~~i~~l~~~ 148 (236)
T 3lv8_A 106 NVIKPALARGEWVVGDRHDMSSQAYQGGGRQIAPSTMQSLKQT 148 (236)
T ss_dssp HTHHHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHcCCEEEEeeecchHHhhhhhccCCCHHHHHHHHHH
Confidence 000011234899999 2 4788899988864
No 188
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=94.65 E-value=0.07 Score=57.67 Aligned_cols=97 Identities=19% Similarity=0.244 Sum_probs=50.5
Q ss_pred EEEecCCCCChhhHHHHHHHHHHHhhcCCceEEEeCCCCCCcCcccccccCCCCccccc---hHHHHHHHH--HhhhcCC
Q psy568 46 LMMVGPSGSGKSTAWKVLLKALERYEGVEGVAHIIDPKAISKEALYGVLDPNTREWTDG---LFTHILRRI--IDNVRGE 120 (1614)
Q Consensus 46 VmlvG~~gsGKTt~~~~L~~al~~~~~~~~~~~~inPkais~~eLyG~~d~~t~eW~DG---vls~i~r~~--~~~~~~~ 120 (1614)
|.+-|+.||||||..+.|++.|.+ +.+ ++.+=.|..-+..+..-.+=....+|.+- +|=.+-|.. .......
T Consensus 5 I~~EG~dGsGKsTq~~~L~~~L~~--~~~-v~~~~eP~~t~~g~~ir~~l~~~~~~~~~~~~lLf~a~R~~~~~~~i~p~ 81 (205)
T 4hlc_A 5 ITFEGPEGSGKTTVINEVYHRLVK--DYD-VIMTREPGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRREHLVLKVIPA 81 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTT--TSC-EEEEESSTTCHHHHHHHHHHHSSCCCCHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHHHC--CCC-EEEeeCCCCChHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456699999999999999999852 433 23334565433333222211111233322 221111211 0000001
Q ss_pred CCCceEEEEcc-------------CCChhhhhhhhhhh
Q psy568 121 ISKRQWIIFDG-------------DVDPEWVENLNSVL 145 (1614)
Q Consensus 121 ~~~~~WivfDG-------------~vd~~WiE~lnsvL 145 (1614)
....+|||+|- .+|..|+..+|...
T Consensus 82 l~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~ 119 (205)
T 4hlc_A 82 LKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFA 119 (205)
T ss_dssp HHTTCEEEEECCHHHHHHHTTTTTSSCHHHHHHHHHHH
T ss_pred HHcCCEEEecCcccchHHHHhccccchHHHHHHHHHHH
Confidence 12348999993 35788888888654
No 189
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=94.60 E-value=0.012 Score=65.01 Aligned_cols=26 Identities=31% Similarity=0.471 Sum_probs=23.0
Q ss_pred cEEEEecCCCCChhhHHHHHHHHHHH
Q psy568 44 HGLMMVGPSGSGKSTAWKVLLKALER 69 (1614)
Q Consensus 44 ~gVmlvG~~gsGKTt~~~~L~~al~~ 69 (1614)
.-|++.||+||||||..+.|++.+..
T Consensus 27 ~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 27 AFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 45788999999999999999999864
No 190
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=94.51 E-value=2.4 Score=42.50 Aligned_cols=115 Identities=12% Similarity=0.132 Sum_probs=80.3
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q psy568 1227 AQISYADMLKKVEPLRLELKSLEVQASENKAKGEETKDLITQLEKSIASYKDEYAQLIAQATAIKTDLDNVQAKFYEYAQ 1306 (1614)
Q Consensus 1227 Ai~~y~~v~~~v~P~~~~l~~~~~~~~~~~~~l~~~~~~l~~~e~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 1306 (1614)
|=-+|-.|.+ ....|..++.....++.+..+++..|..+...+..|...-.+...+.+..+.++..++.++.+.
T Consensus 16 ad~KyeEvaR----~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEA-- 89 (155)
T 2efr_A 16 NYHLENEVAR----LKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEA-- 89 (155)
T ss_dssp HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred hHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 3445666665 7778888888888888888888888888888888887777776666666766666666665544
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhh
Q psy568 1307 LIAQATAIKTDLDNVQAKVERSMALLKSLGIERERWEATSETFRSQMAT 1355 (1614)
Q Consensus 1307 ~~~~~~~l~~~~~~~~~rl~~a~~l~~~L~~e~~rW~~~~~~~~~~~~~ 1355 (1614)
+...+..+.++...++-++.|.++-..|+.....+...+..
T Consensus 90 --------E~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~ 130 (155)
T 2efr_A 90 --------ETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQ 130 (155)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666677777777777777766666666553
No 191
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=94.44 E-value=1.8 Score=48.24 Aligned_cols=45 Identities=13% Similarity=0.096 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Q psy568 1303 EYAQLIAQATAIKTDLDNVQAKVERSMALLKSLGIERERWEATSE 1347 (1614)
Q Consensus 1303 ~~~~~~~~~~~l~~~~~~~~~rl~~a~~l~~~L~~e~~rW~~~~~ 1347 (1614)
+|..+..+.+.++.++..++.++..+..-+..+..+...-...+.
T Consensus 91 E~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~ 135 (256)
T 3na7_A 91 ELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEML 135 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445554455455555554444444444444444333333333333
No 192
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.34 E-value=0.018 Score=61.03 Aligned_cols=24 Identities=21% Similarity=0.444 Sum_probs=21.5
Q ss_pred cEEEEecCCCCChhhHHHHHHHHH
Q psy568 44 HGLMMVGPSGSGKSTAWKVLLKAL 67 (1614)
Q Consensus 44 ~gVmlvG~~gsGKTt~~~~L~~al 67 (1614)
.-++|+||+||||||+.+.|.+.+
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 358999999999999999998865
No 193
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=94.32 E-value=0.067 Score=64.84 Aligned_cols=41 Identities=27% Similarity=0.311 Sum_probs=29.9
Q ss_pred CCccEEE--eecCCCChHHHHHHHHHHc---------CCeEEEEEecCCCCh
Q psy568 756 PQGHLLL--IGVSGAGKTTLSRFVAFMN---------GLSVFQIRAHNKYTG 796 (1614)
Q Consensus 756 p~gh~LL--vG~~GsGKtsl~rlaA~~~---------~~~~~~i~~~~~~~~ 796 (1614)
..+++++ +|++|+|||++++.++... +..++.++.....+.
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNL 100 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSH
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCH
Confidence 3456888 8999999999999888654 556777775444443
No 194
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=94.30 E-value=0.036 Score=60.35 Aligned_cols=100 Identities=21% Similarity=0.399 Sum_probs=57.5
Q ss_pred EEEEecCCCCChhhHHHHHHHHHHHhhcCCceEEEeCCCCCCcCcccccc--cCC---CCcc---ccchHHHHHHHHH-h
Q psy568 45 GLMMVGPSGSGKSTAWKVLLKALERYEGVEGVAHIIDPKAISKEALYGVL--DPN---TREW---TDGLFTHILRRII-D 115 (1614)
Q Consensus 45 gVmlvG~~gsGKTt~~~~L~~al~~~~~~~~~~~~inPkais~~eLyG~~--d~~---t~eW---~DGvls~i~r~~~-~ 115 (1614)
=|++.|++||||||..+.|++.|... +...+..+=.|..-...+..-.+ ++. ..++ +..+|-.+-|... .
T Consensus 5 ~i~~eG~~gsGKsT~~~~l~~~l~~~-~~~~v~~~rep~~t~~g~~ir~~l~~~~~~~~~~~~~~~e~lL~~A~R~~~~~ 83 (213)
T 4tmk_A 5 YIVIEGLEGAGKTTARNVVVETLEQL-GIRDMVFTREPGGTQLAEKLRSLLLDIKSVGDEVITDKAEVLMFYAARVQLVE 83 (213)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHT-TCCCEEEEESSCSSHHHHHHHHHHHSTTTTTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHc-CCCcceeeeCCCCCHHHHHHHHHHhcccccccccCChHHHHHHHHHHHHHHHH
Confidence 36788999999999999999999765 44233445567653333321111 111 1223 3344444444321 0
Q ss_pred h-hcCCCCCceEEEEc----------c---CCChhhhhhhhhhh
Q psy568 116 N-VRGEISKRQWIIFD----------G---DVDPEWVENLNSVL 145 (1614)
Q Consensus 116 ~-~~~~~~~~~WivfD----------G---~vd~~WiE~lnsvL 145 (1614)
. .......-+|+|+| | .+|..|++.+|...
T Consensus 84 ~~i~paL~~g~~VI~DRy~~S~~AYq~~~~g~~~~~~~~l~~~~ 127 (213)
T 4tmk_A 84 TVIKPALANGTWVIGDRHDLSTQAYQGGGRGIDQHMLATLRDAV 127 (213)
T ss_dssp HTHHHHHHTTCEEEEECCHHHHHHHTTTTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCEEEEcCcHhHHHHHcccccCCCHHHHHHHHHHh
Confidence 0 01111234899999 3 46889999998643
No 195
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.27 E-value=0.021 Score=61.68 Aligned_cols=26 Identities=38% Similarity=0.607 Sum_probs=22.2
Q ss_pred ccEEEEecCCCCChhhHHHHHHHHHH
Q psy568 43 NHGLMMVGPSGSGKSTAWKVLLKALE 68 (1614)
Q Consensus 43 r~gVmlvG~~gsGKTt~~~~L~~al~ 68 (1614)
..-+.|+||+||||||+++.|.+-+.
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 34689999999999999999998753
No 196
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=94.20 E-value=0.087 Score=62.69 Aligned_cols=88 Identities=22% Similarity=0.242 Sum_probs=48.9
Q ss_pred cEEEEecCCCCChhhHHHHHHHHHHHhhcCCceEEEe-CCCCCCcCcccccccCCCCccccchHHHHHHHHHhhhcCCCC
Q psy568 44 HGLMMVGPSGSGKSTAWKVLLKALERYEGVEGVAHII-DPKAISKEALYGVLDPNTREWTDGLFTHILRRIIDNVRGEIS 122 (1614)
Q Consensus 44 ~gVmlvG~~gsGKTt~~~~L~~al~~~~~~~~~~~~i-nPkais~~eLyG~~d~~t~eW~DGvls~i~r~~~~~~~~~~~ 122 (1614)
.-|.|+||+||||||+++.|.+.+.... .+.+.++ .|-......-.|++....-.-....|+..++.+.. .
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~~~~~~~--~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~------~ 208 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMIDYINQTK--SYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALR------E 208 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHHHHHHHS--CCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHTT------S
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcCcCC--CcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHhh------h
Confidence 3488999999999999999999886541 1222222 23222111122222110000011345556666532 1
Q ss_pred CceEEEEccCCChhhhh
Q psy568 123 KRQWIIFDGDVDPEWVE 139 (1614)
Q Consensus 123 ~~~WivfDG~vd~~WiE 139 (1614)
.+..|++|-|-|+.-++
T Consensus 209 ~pd~illdE~~d~e~~~ 225 (372)
T 2ewv_A 209 DPDVIFVGEMRDLETVE 225 (372)
T ss_dssp CCSEEEESCCCSHHHHH
T ss_pred CcCEEEECCCCCHHHHH
Confidence 35799999999876544
No 197
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.17 E-value=0.054 Score=58.05 Aligned_cols=25 Identities=40% Similarity=0.555 Sum_probs=22.7
Q ss_pred EEEecCCCCChhhHHHHHHHHHHHh
Q psy568 46 LMMVGPSGSGKSTAWKVLLKALERY 70 (1614)
Q Consensus 46 VmlvG~~gsGKTt~~~~L~~al~~~ 70 (1614)
|.|.|++||||||+.+.|++.+...
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~ 27 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKR 27 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC
Confidence 7899999999999999999998654
No 198
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.04 E-value=0.026 Score=59.70 Aligned_cols=24 Identities=29% Similarity=0.538 Sum_probs=21.8
Q ss_pred EEEEecCCCCChhhHHHHHHHHHH
Q psy568 45 GLMMVGPSGSGKSTAWKVLLKALE 68 (1614)
Q Consensus 45 gVmlvG~~gsGKTt~~~~L~~al~ 68 (1614)
-+.|+||+||||||+++.+++.+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 378999999999999999999874
No 199
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.00 E-value=0.072 Score=58.43 Aligned_cols=26 Identities=23% Similarity=0.319 Sum_probs=19.9
Q ss_pred EEEEecCCCCChhhHHHHHHHHHHHh
Q psy568 45 GLMMVGPSGSGKSTAWKVLLKALERY 70 (1614)
Q Consensus 45 gVmlvG~~gsGKTt~~~~L~~al~~~ 70 (1614)
=|++.|++||||||..+.|++.+...
T Consensus 27 ~I~~eG~~GsGKsT~~~~l~~~l~~~ 52 (227)
T 3v9p_A 27 FITFEGIDGAGKTTHLQWFCDRLQER 52 (227)
T ss_dssp EEEEECCC---CHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 37778999999999999999998754
No 200
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=93.98 E-value=0.022 Score=59.79 Aligned_cols=24 Identities=42% Similarity=0.710 Sum_probs=21.9
Q ss_pred cEEEEecCCCCChhhHHHHHHHHH
Q psy568 44 HGLMMVGPSGSGKSTAWKVLLKAL 67 (1614)
Q Consensus 44 ~gVmlvG~~gsGKTt~~~~L~~al 67 (1614)
.-|.|+||+||||||+.+.|++.+
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 458999999999999999999885
No 201
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=93.82 E-value=0.085 Score=60.80 Aligned_cols=65 Identities=22% Similarity=0.412 Sum_probs=47.5
Q ss_pred cEEEeecCCCChHHHHHHHHHHcCCeEEEEE--------------------------------ecCCCChhcHHHHHHHH
Q psy568 759 HLLLIGVSGAGKTTLSRFVAFMNGLSVFQIR--------------------------------AHNKYTGADFDEDLRTV 806 (1614)
Q Consensus 759 h~LLvG~~GsGKtsl~rlaA~~~~~~~~~i~--------------------------------~~~~~~~~df~~~lk~~ 806 (1614)
.++|+||+|||||++++.+|...+..++... +...|+..+|.+..+.+
T Consensus 7 ~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~qvy~~~~igTakp~~~e~~gvph~lid~~~~~~~~~~~~F~~~a~~~ 86 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALADALPCELISVDSALIYRGMDIGTAKPSRELLARYPHRLIDIRDPAESYSAAEFRADALAA 86 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTTTBTTCCTTTTCCCHHHHHHSCEETSSCBCTTSCCCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEeccchhhhcCCCcccCCCCHHHHcCCCEEEeeccCcccccCHHHHHHHHHHH
Confidence 4889999999999999999999888877762 12456677888877777
Q ss_pred HHHhccCCCcEEEEEcCC
Q psy568 807 LRRSGCKNEKIAFLLDES 824 (1614)
Q Consensus 807 l~~ag~~~~~~v~ll~d~ 824 (1614)
+......+ +.++++-.+
T Consensus 87 i~~i~~~g-~~~IlvGGt 103 (323)
T 3crm_A 87 MAKATARG-RIPLLVGGT 103 (323)
T ss_dssp HHHHHHTT-CEEEEEESC
T ss_pred HHHHHHcC-CeEEEECCc
Confidence 76654344 355555444
No 202
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=93.81 E-value=0.045 Score=67.48 Aligned_cols=29 Identities=28% Similarity=0.430 Sum_probs=23.5
Q ss_pred HHhcC-CCEEEecCCCCchHHHHHHHHhcC
Q psy568 412 WLAEH-KPLVLCGPPGSGKTMTLLSALRAL 440 (1614)
Q Consensus 412 ~l~~~-~~vLL~Gp~GtGKT~lv~~~~~~l 440 (1614)
.+..+ .++++.|+||||||+++..+++.+
T Consensus 40 ~i~~~~~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 40 AIKEKKHHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp HHHSSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHhcCCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 34434 499999999999999998888765
No 203
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=93.80 E-value=0.2 Score=59.02 Aligned_cols=35 Identities=14% Similarity=0.214 Sum_probs=29.3
Q ss_pred ccEEEeecCCCChHHHHHHHHHHcCCeEEEEEecC
Q psy568 758 GHLLLIGVSGAGKTTLSRFVAFMNGLSVFQIRAHN 792 (1614)
Q Consensus 758 gh~LLvG~~GsGKtsl~rlaA~~~~~~~~~i~~~~ 792 (1614)
+.+++.|++|+|||++++.++...+.....+++..
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~ 65 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRK 65 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGG
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchh
Confidence 57999999999999999988877766677777654
No 204
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=93.79 E-value=0.11 Score=56.69 Aligned_cols=38 Identities=24% Similarity=0.242 Sum_probs=27.8
Q ss_pred cCCCEEEecCCCCchHHHHHHHHhcC--CCCceEEEEccc
Q psy568 415 EHKPLVLCGPPGSGKTMTLLSALRAL--PDMEVVSLNFSS 452 (1614)
Q Consensus 415 ~~~~vLL~Gp~GtGKT~lv~~~~~~l--~~~~~~~i~~s~ 452 (1614)
.|.=++++||+|+|||+++..++... .+..+..+.+.-
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~ 50 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKI 50 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEecc
Confidence 45667889999999999988888665 345566565443
No 205
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=93.78 E-value=0.029 Score=61.48 Aligned_cols=37 Identities=27% Similarity=0.324 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhccEEEEecCCCCChhhHHHHHHHHHH
Q psy568 32 KVLQLYQISNLNHGLMMVGPSGSGKSTAWKVLLKALE 68 (1614)
Q Consensus 32 K~~qL~e~~~~r~gVmlvG~~gsGKTt~~~~L~~al~ 68 (1614)
|+..-+.-|.-..-+.|+||+||||||+++.|.+.+.
T Consensus 5 ~~~~~~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 5 KIHHHHHHMAQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp ----------CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred ccccccccCCCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 4555555666666899999999999999999998753
No 206
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=93.78 E-value=0.24 Score=58.32 Aligned_cols=134 Identities=8% Similarity=0.011 Sum_probs=83.6
Q ss_pred CCCEEEecCCCCchHHHHHHHHhcCC--C-CceEEEEcccCCCHHHHHhHhhcccceeecCCccccccccCCceEEEEec
Q psy568 416 HKPLVLCGPPGSGKTMTLLSALRALP--D-MEVVSLNFSSATTPELLLKTFDHYCEYRKTPNGVILSPIQLGKWLVLFCD 492 (1614)
Q Consensus 416 ~~~vLL~Gp~GtGKT~lv~~~~~~l~--~-~~~~~i~~s~~t~~~~l~~~~~~~~~~~~~~~g~~~~p~~~gk~~vlfiD 492 (1614)
....|++||.|.||++.+..+.+.+. + .++..+.+....+...+...... .|. .|.+-|++||
T Consensus 18 ~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~pl-f~~~kvvii~ 83 (343)
T 1jr3_D 18 RAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDPNTDWNAIFSLCQA-------------MSL-FASRQTLLLL 83 (343)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCTTCCHHHHHHHHHH-------------HHH-CCSCEEEEEE
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecCCCCHHHHHHHhcC-------------cCC-ccCCeEEEEE
Confidence 35578899999999999988877542 2 23333445444555555444321 122 1334566679
Q ss_pred cCCC-CCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCC-CCCCCCCcccccccccEEEecCCChh
Q psy568 493 EINL-PDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPT-DPGRKPLSHRFLRHVPVIYVDYPGET 570 (1614)
Q Consensus 493 din~-p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~-~~g~~~l~~r~~r~f~~i~i~~p~~~ 570 (1614)
|.++ +..+ ..+.|..+++.- .+++.||.+++... ...++.+.+.+.+|+.++.+..++.+
T Consensus 84 ~~~~kl~~~------~~~aLl~~le~p------------~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~ 145 (343)
T 1jr3_D 84 LPENGPNAA------INEQLLTLTGLL------------HDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQA 145 (343)
T ss_dssp CCSSCCCTT------HHHHHHHHHTTC------------BTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTT
T ss_pred CCCCCCChH------HHHHHHHHHhcC------------CCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHH
Confidence 9987 5433 344455666531 12455555544321 12356788899999999999999999
Q ss_pred HHHHHHHHHHH
Q psy568 571 SLKQIYGTFSR 581 (1614)
Q Consensus 571 ~l~~I~~~~~~ 581 (1614)
++.......+.
T Consensus 146 ~l~~~l~~~~~ 156 (343)
T 1jr3_D 146 QLPRWVAARAK 156 (343)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 98877766654
No 207
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=93.68 E-value=0.1 Score=61.61 Aligned_cols=32 Identities=25% Similarity=0.263 Sum_probs=26.4
Q ss_pred ccEEEeecCCCChHHHHHHHHHHcCCeEEEEEec
Q psy568 758 GHLLLIGVSGAGKTTLSRFVAFMNGLSVFQIRAH 791 (1614)
Q Consensus 758 gh~LLvG~~GsGKtsl~rlaA~~~~~~~~~i~~~ 791 (1614)
+.+++.|+.|+|||++++.++...+ .+.+++.
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~ 63 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNERP--GILIDCR 63 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHH
T ss_pred CeEEEECCCcCCHHHHHHHHHHHcC--cEEEEee
Confidence 6799999999999999998887765 5556554
No 208
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=93.68 E-value=3.9 Score=40.14 Aligned_cols=53 Identities=11% Similarity=0.297 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhc
Q psy568 1304 YAQLIAQATAIKTDLDNVQAKVERSMALLKSLGIERERWEATSETFRSQMATI 1356 (1614)
Q Consensus 1304 ~~~~~~~~~~l~~~~~~~~~rl~~a~~l~~~L~~e~~rW~~~~~~~~~~~~~l 1356 (1614)
+..+++....++..+...+.|++.-+.....|..++.+-...+..++.++.-+
T Consensus 71 ~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~ 123 (129)
T 2fxo_A 71 CDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDL 123 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666677888888999999999999999999999888888888876643
No 209
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=93.66 E-value=0.033 Score=58.30 Aligned_cols=23 Identities=35% Similarity=0.303 Sum_probs=21.2
Q ss_pred EEEEecCCCCChhhHHHHHHHHH
Q psy568 45 GLMMVGPSGSGKSTAWKVLLKAL 67 (1614)
Q Consensus 45 gVmlvG~~gsGKTt~~~~L~~al 67 (1614)
-|+|.||+||||||+.+.|++.+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999886
No 210
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=93.61 E-value=0.033 Score=60.10 Aligned_cols=25 Identities=40% Similarity=0.324 Sum_probs=23.0
Q ss_pred cEEEEecCCCCChhhHHHHHHHHHH
Q psy568 44 HGLMMVGPSGSGKSTAWKVLLKALE 68 (1614)
Q Consensus 44 ~gVmlvG~~gsGKTt~~~~L~~al~ 68 (1614)
.-|.|+||+||||||+.+.|++.+.
T Consensus 26 ~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4588999999999999999999987
No 211
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=93.56 E-value=0.035 Score=60.33 Aligned_cols=27 Identities=37% Similarity=0.415 Sum_probs=23.9
Q ss_pred ccEEEEecCCCCChhhHHHHHHHHHHH
Q psy568 43 NHGLMMVGPSGSGKSTAWKVLLKALER 69 (1614)
Q Consensus 43 r~gVmlvG~~gsGKTt~~~~L~~al~~ 69 (1614)
..-|.|+||+||||||+.+.|++.+..
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~~~~~~ 48 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLAAALSA 48 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 446889999999999999999999874
No 212
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=93.55 E-value=0.096 Score=58.77 Aligned_cols=29 Identities=28% Similarity=0.399 Sum_probs=25.8
Q ss_pred EEEeecCCCChHHHHHHHHHHcCCeEEEE
Q psy568 760 LLLIGVSGAGKTTLSRFVAFMNGLSVFQI 788 (1614)
Q Consensus 760 ~LLvG~~GsGKtsl~rlaA~~~~~~~~~i 788 (1614)
++++|++||||||+++.+|...+..++..
T Consensus 4 i~I~G~~GSGKSTla~~La~~~~~~~i~~ 32 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMAIQIAQETGWPVVAL 32 (253)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHCCCEEEC
T ss_pred EEEECCCCcCHHHHHHHHHhcCCCeEEec
Confidence 68999999999999999998888887755
No 213
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=93.52 E-value=0.035 Score=59.91 Aligned_cols=33 Identities=24% Similarity=0.198 Sum_probs=25.5
Q ss_pred HHhcCCCEEEecCCCCchHHHHHHHHhcCCCCce
Q psy568 412 WLAEHKPLVLCGPPGSGKTMTLLSALRALPDMEV 445 (1614)
Q Consensus 412 ~l~~~~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~ 445 (1614)
-+..+..++|+||+||||||+++.+++.+ +..+
T Consensus 21 ~~~~~~~i~l~G~~GsGKsTl~~~La~~l-~~~~ 53 (199)
T 3vaa_A 21 QSNAMVRIFLTGYMGAGKTTLGKAFARKL-NVPF 53 (199)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHH-TCCE
T ss_pred ecCCCCEEEEEcCCCCCHHHHHHHHHHHc-CCCE
Confidence 34567889999999999999999888876 4443
No 214
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=93.46 E-value=0.052 Score=57.16 Aligned_cols=32 Identities=16% Similarity=0.232 Sum_probs=25.3
Q ss_pred CCCEEEecCCCCchHHHHHHHHhcCCCCceEEE
Q psy568 416 HKPLVLCGPPGSGKTMTLLSALRALPDMEVVSL 448 (1614)
Q Consensus 416 ~~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i 448 (1614)
+.-|+|+|++|+||||+++.+.+.+ +..++.+
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l-~~~~~~~ 34 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL-PEPWLAF 34 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS-SSCEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc-CCCeEEe
Confidence 4568999999999999999998887 3444433
No 215
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=93.37 E-value=0.035 Score=59.12 Aligned_cols=24 Identities=42% Similarity=0.667 Sum_probs=21.4
Q ss_pred EEEEecCCCCChhhHHHHHHHHHH
Q psy568 45 GLMMVGPSGSGKSTAWKVLLKALE 68 (1614)
Q Consensus 45 gVmlvG~~gsGKTt~~~~L~~al~ 68 (1614)
-+.|+||+||||||+.+.|.+.+.
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 478999999999999999998764
No 216
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=93.36 E-value=0.05 Score=57.40 Aligned_cols=26 Identities=31% Similarity=0.466 Sum_probs=22.2
Q ss_pred cEEEeecCCCChHHHHHHHHHHcCCe
Q psy568 759 HLLLIGVSGAGKTTLSRFVAFMNGLS 784 (1614)
Q Consensus 759 h~LLvG~~GsGKtsl~rlaA~~~~~~ 784 (1614)
++.|+|++||||||++++++-..+..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~ 27 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKR 27 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 47899999999999999999776543
No 217
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=93.34 E-value=0.051 Score=58.22 Aligned_cols=30 Identities=23% Similarity=0.376 Sum_probs=25.3
Q ss_pred HHHHhccEEEEecCCCCChhhHHHHHHHHH
Q psy568 38 QISNLNHGLMMVGPSGSGKSTAWKVLLKAL 67 (1614)
Q Consensus 38 e~~~~r~gVmlvG~~gsGKTt~~~~L~~al 67 (1614)
+.|.-..-|+|+|++||||||+.+.|++.+
T Consensus 4 ~~m~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 4 EKLKKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp HHHTTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred hcCcCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 345455679999999999999999999876
No 218
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=93.34 E-value=0.043 Score=58.28 Aligned_cols=25 Identities=24% Similarity=0.364 Sum_probs=22.7
Q ss_pred ccEEEEecCCCCChhhHHHHHHHHH
Q psy568 43 NHGLMMVGPSGSGKSTAWKVLLKAL 67 (1614)
Q Consensus 43 r~gVmlvG~~gsGKTt~~~~L~~al 67 (1614)
...|+|+||+||||||+.+.|++.+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999999886
No 219
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.31 E-value=0.035 Score=60.01 Aligned_cols=24 Identities=38% Similarity=0.667 Sum_probs=21.3
Q ss_pred cEEEEecCCCCChhhHHHHHHHHH
Q psy568 44 HGLMMVGPSGSGKSTAWKVLLKAL 67 (1614)
Q Consensus 44 ~gVmlvG~~gsGKTt~~~~L~~al 67 (1614)
.-+.|+||+||||||+.+.|++.+
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 458899999999999999998864
No 220
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=93.31 E-value=0.1 Score=59.36 Aligned_cols=74 Identities=20% Similarity=0.366 Sum_probs=54.0
Q ss_pred EEEeecCCCChHHHHHHHHHHcCCeEEEE--------------------------------EecCCCChhcHHHHHHHHH
Q psy568 760 LLLIGVSGAGKTTLSRFVAFMNGLSVFQI--------------------------------RAHNKYTGADFDEDLRTVL 807 (1614)
Q Consensus 760 ~LLvG~~GsGKtsl~rlaA~~~~~~~~~i--------------------------------~~~~~~~~~df~~~lk~~l 807 (1614)
++++||+|||||+|+.-+|...+.+++.. .+...|+..+|.++.+..+
T Consensus 13 i~i~GptgsGKt~la~~La~~~~~~iis~Ds~qvY~~~~igTakp~~~E~~~v~hhlid~~~~~e~~s~~~f~~~a~~~i 92 (316)
T 3foz_A 13 IFLMGPTASGKTALAIELRKILPVELISVDSALIYKGMDIGTAKPNAEELLAAPHRLLDIRDPSQAYSAADFRRDALAEM 92 (316)
T ss_dssp EEEECCTTSCHHHHHHHHHHHSCEEEEECCTTTTBTTCCTTTTCCCHHHHHHSCEETSSCBCTTSCCCHHHHHHHHHHHH
T ss_pred EEEECCCccCHHHHHHHHHHhCCCcEEecccccccccccccCCCCCHHHHcCCCEEEeccCCccccccHHHHHHHHHHHH
Confidence 67899999999999999998888766553 2345688888998888877
Q ss_pred HHhccCCCcEEEEEcCCcccccchHHHHHHhhcc
Q psy568 808 RRSGCKNEKIAFLLDESNVLESGFLERMNTLLAN 841 (1614)
Q Consensus 808 ~~ag~~~~~~v~ll~d~~i~~~~~le~in~lL~~ 841 (1614)
...-..|+ +.+++-.+.+ ++++|+.+
T Consensus 93 ~~i~~~g~-~pilVGGTgl-------Yi~all~g 118 (316)
T 3foz_A 93 ADITAAGR-IPLLVGGTML-------YFKALLEG 118 (316)
T ss_dssp HHHHHTTC-EEEEEESCHH-------HHHHHHSC
T ss_pred HHHHhCCC-cEEEEcCcHH-------HHHHHHcC
Confidence 76654444 4566655533 67788753
No 221
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=93.30 E-value=0.037 Score=62.75 Aligned_cols=25 Identities=44% Similarity=0.585 Sum_probs=22.4
Q ss_pred cEEEEecCCCCChhhHHHHHHHHHH
Q psy568 44 HGLMMVGPSGSGKSTAWKVLLKALE 68 (1614)
Q Consensus 44 ~gVmlvG~~gsGKTt~~~~L~~al~ 68 (1614)
-.|+||||+||||||++++|.+.+.
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3689999999999999999999863
No 222
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=93.23 E-value=0.041 Score=59.36 Aligned_cols=24 Identities=29% Similarity=0.392 Sum_probs=21.8
Q ss_pred cEEEEecCCCCChhhHHHHHHHHH
Q psy568 44 HGLMMVGPSGSGKSTAWKVLLKAL 67 (1614)
Q Consensus 44 ~gVmlvG~~gsGKTt~~~~L~~al 67 (1614)
.-|.|+||+||||||+.+.|++.+
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHhh
Confidence 358899999999999999999886
No 223
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=93.22 E-value=0.031 Score=59.73 Aligned_cols=23 Identities=39% Similarity=0.491 Sum_probs=20.5
Q ss_pred cEEEEecCCCCChhhHHHHHHHH
Q psy568 44 HGLMMVGPSGSGKSTAWKVLLKA 66 (1614)
Q Consensus 44 ~gVmlvG~~gsGKTt~~~~L~~a 66 (1614)
.-+.|+||+||||||+.+.|++.
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 34889999999999999999875
No 224
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.21 E-value=0.039 Score=60.07 Aligned_cols=24 Identities=29% Similarity=0.386 Sum_probs=21.8
Q ss_pred EEEEecCCCCChhhHHHHHHHHHH
Q psy568 45 GLMMVGPSGSGKSTAWKVLLKALE 68 (1614)
Q Consensus 45 gVmlvG~~gsGKTt~~~~L~~al~ 68 (1614)
-|.|+||+||||||+.+.|++.+.
T Consensus 8 ~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 8 VIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999999874
No 225
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=93.20 E-value=0.064 Score=66.07 Aligned_cols=46 Identities=17% Similarity=0.190 Sum_probs=34.0
Q ss_pred CCchHHHHHHHHHHHHHhcc-EEEEecCCCCChhhHHHHHHHHHHHh
Q psy568 25 EGGPWMEKVLQLYQISNLNH-GLMMVGPSGSGKSTAWKVLLKALERY 70 (1614)
Q Consensus 25 ~~~~~~~K~~qL~e~~~~r~-gVmlvG~~gsGKTt~~~~L~~al~~~ 70 (1614)
.++.+..-+-.+-+.+..+. .++|.|+||||||+++..+...+...
T Consensus 26 Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~ 72 (459)
T 3upu_A 26 LTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALIST 72 (459)
T ss_dssp CCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHhc
Confidence 34555555555544544444 89999999999999999999998764
No 226
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=93.09 E-value=0.04 Score=60.35 Aligned_cols=24 Identities=46% Similarity=0.671 Sum_probs=21.4
Q ss_pred cEEEEecCCCCChhhHHHHHHHHH
Q psy568 44 HGLMMVGPSGSGKSTAWKVLLKAL 67 (1614)
Q Consensus 44 ~gVmlvG~~gsGKTt~~~~L~~al 67 (1614)
.-+.|+||+||||||+++.|.+-+
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 348899999999999999999865
No 227
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=92.97 E-value=0.05 Score=57.97 Aligned_cols=26 Identities=19% Similarity=0.434 Sum_probs=23.3
Q ss_pred cEEEEecCCCCChhhHHHHHHHHHHH
Q psy568 44 HGLMMVGPSGSGKSTAWKVLLKALER 69 (1614)
Q Consensus 44 ~gVmlvG~~gsGKTt~~~~L~~al~~ 69 (1614)
.-|+|.|++||||||+.+.|++.+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 29 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRK 29 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 45899999999999999999998763
No 228
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=92.95 E-value=0.078 Score=57.92 Aligned_cols=111 Identities=21% Similarity=0.308 Sum_probs=60.1
Q ss_pred EEEecCCCCChhhHHHHHHHHHHHhhcCCceEEEeCCCCCCcCccccc-ccCCCCccccch---HHHHHHHH-Hhh-hcC
Q psy568 46 LMMVGPSGSGKSTAWKVLLKALERYEGVEGVAHIIDPKAISKEALYGV-LDPNTREWTDGL---FTHILRRI-IDN-VRG 119 (1614)
Q Consensus 46 VmlvG~~gsGKTt~~~~L~~al~~~~~~~~~~~~inPkais~~eLyG~-~d~~t~eW~DGv---ls~i~r~~-~~~-~~~ 119 (1614)
|++.|++||||||..+.|++.|....+.++...+=.|..-+..++.-. +... .+|.+-. |=.+-|-. ... ...
T Consensus 24 i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~~t~~g~~ir~~l~~~-~~~~~~~e~llf~a~R~~~~~~~I~p 102 (223)
T 3ld9_A 24 ITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPGGTLLNESVRNLLFKA-QGLDSLSELLFFIAMRREHFVKIIKP 102 (223)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESSCSSHHHHHHHHHHHTC-SSCCHHHHHHHHHHHHHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeCCCCChHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 556699999999999999999976235444432456764333332111 1111 1244322 11222211 000 000
Q ss_pred CCCCceEEEEcc-------------CCChhhhhhhhhhhcCCCccccCCCceeeCCCCceEEEE
Q psy568 120 EISKRQWIIFDG-------------DVDPEWVENLNSVLDDNKLLTLPNGERLSLPPNIRIMFE 170 (1614)
Q Consensus 120 ~~~~~~WivfDG-------------~vd~~WiE~lnsvLDdnk~L~L~nGeri~l~~~~~~iFE 170 (1614)
.....+|+|+|= .+|..|++.+|... .| ..|.+.+++.
T Consensus 103 aL~~g~~VI~DRy~~S~~Ayq~~~~g~~~~~~~~l~~~~---------~~----~~PDl~I~Ld 153 (223)
T 3ld9_A 103 SLMQKKIVICDRFIDSTIAYQGYGQGIDCSLIDQLNDLV---------ID----VYPDITFIID 153 (223)
T ss_dssp HHHTTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHH---------CS----SCCSEEEEEE
T ss_pred HHhcCCeEEEccchhhHHHhccccCCccHHHHHHHHHHh---------hc----CCCCeEEEEe
Confidence 112347999992 46788888888654 12 4566777773
No 229
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=92.94 E-value=0.044 Score=59.60 Aligned_cols=24 Identities=33% Similarity=0.540 Sum_probs=21.2
Q ss_pred cEEEEecCCCCChhhHHHHHHHHH
Q psy568 44 HGLMMVGPSGSGKSTAWKVLLKAL 67 (1614)
Q Consensus 44 ~gVmlvG~~gsGKTt~~~~L~~al 67 (1614)
.-++|+||+||||||+.+.|.+.+
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHST
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 348899999999999999998875
No 230
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=92.91 E-value=0.088 Score=57.25 Aligned_cols=98 Identities=20% Similarity=0.270 Sum_probs=52.9
Q ss_pred EEEEecCCCCChhhHHHHHHHHHHHhhcCCceEEEeCCCCCCcCccccc-c-cCCCCcccc---chHHHHHHHHH--hhh
Q psy568 45 GLMMVGPSGSGKSTAWKVLLKALERYEGVEGVAHIIDPKAISKEALYGV-L-DPNTREWTD---GLFTHILRRII--DNV 117 (1614)
Q Consensus 45 gVmlvG~~gsGKTt~~~~L~~al~~~~~~~~~~~~inPkais~~eLyG~-~-d~~t~eW~D---Gvls~i~r~~~--~~~ 117 (1614)
=|++.|++||||||..+.|++.|... +.++ ..+=.|..-...+..-. + ++...+|.+ .+|=.+-|.-. ...
T Consensus 8 ~i~~eG~~gsGKsT~~~~l~~~l~~~-~~~v-~~~~~p~~~~~g~~i~~~l~~~~~~~~~~~~~~llf~a~R~~~~~~~i 85 (213)
T 4edh_A 8 FVTLEGPEGAGKSTNRDYLAERLRER-GIEV-QLTREPGGTPLAERIRELLLAPSDEPMAADTELLLMFAARAQHLAGVI 85 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHTT-TCCE-EEEESSCSSHHHHHHHHHHHSCCSSCCCHHHHHHHHHHHHHHHHHHTH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHc-CCCc-ccccCCCCCHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999998754 4433 33345643222222221 1 222223433 33322222210 000
Q ss_pred cCCCCCceEEEEcc-------------CCChhhhhhhhhh
Q psy568 118 RGEISKRQWIIFDG-------------DVDPEWVENLNSV 144 (1614)
Q Consensus 118 ~~~~~~~~WivfDG-------------~vd~~WiE~lnsv 144 (1614)
.......+|+|+|- .+|..|++.||..
T Consensus 86 ~p~l~~g~~Vi~DRy~~S~~ayq~~~~g~~~~~~~~l~~~ 125 (213)
T 4edh_A 86 RPALARGAVVLCDRFTDATYAYQGGGRGLPEARIAALESF 125 (213)
T ss_dssp HHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHH
T ss_pred HHHHHCCCEEEECccHhHHHHHhhhccCCCHHHHHHHHHH
Confidence 00112347999992 3678899988863
No 231
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=92.89 E-value=3.1 Score=38.84 Aligned_cols=54 Identities=19% Similarity=0.225 Sum_probs=24.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy568 1236 KKVEPLRLELKSLEVQASENKAKGEETKDLITQLEKSIASYKDEYAQLIAQATA 1289 (1614)
Q Consensus 1236 ~~v~P~~~~l~~~~~~~~~~~~~l~~~~~~l~~~e~~l~~l~~~~~~~~~~~~~ 1289 (1614)
+++.-++.....+.......+.++...+....+.+..+..|+.....+..+.+.
T Consensus 9 kKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~ 62 (101)
T 3u1c_A 9 KKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQ 62 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444444443333333
No 232
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=92.89 E-value=0.05 Score=58.77 Aligned_cols=23 Identities=35% Similarity=0.557 Sum_probs=21.7
Q ss_pred EEEEecCCCCChhhHHHHHHHHH
Q psy568 45 GLMMVGPSGSGKSTAWKVLLKAL 67 (1614)
Q Consensus 45 gVmlvG~~gsGKTt~~~~L~~al 67 (1614)
-|+|+|++||||||+.+.|++.+
T Consensus 20 ~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 20 SIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 69999999999999999999987
No 233
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=92.89 E-value=0.6 Score=50.59 Aligned_cols=143 Identities=17% Similarity=0.171 Sum_probs=74.5
Q ss_pred CCEEEecCCCCchHHHHHHHHhcC--CCCceEEEEcccCCCHHH--HHhHhhcccceeecCCccccc-----c-ccCCce
Q psy568 417 KPLVLCGPPGSGKTMTLLSALRAL--PDMEVVSLNFSSATTPEL--LLKTFDHYCEYRKTPNGVILS-----P-IQLGKW 486 (1614)
Q Consensus 417 ~~vLL~Gp~GtGKT~lv~~~~~~l--~~~~~~~i~~s~~t~~~~--l~~~~~~~~~~~~~~~g~~~~-----p-~~~gk~ 486 (1614)
..|++.|++|||||+++.+++..+ .+..+..+....+-.+.. +...+...-.....-.|.... . .. .+.
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~~~~al~~gl~~~~~~~~~~~~~~~~e~~l~~~L~-~~p 85 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRAETEALLNGLPQQPLLRTEYRGMTLEEMDLDALLK-AAP 85 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCHHHHHHHTTSCBCCCEEEEETTEEEEECCHHHHHH-HCC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCChhHHHHhcCccccCcceeecCCcccccccHHHHHh-cCC
Confidence 468999999999999987777654 366777777765544432 222222110000000011110 0 00 122
Q ss_pred EEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCC-------------CCCCCCCCcc
Q psy568 487 LVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPP-------------TDPGRKPLSH 553 (1614)
Q Consensus 487 ~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~-------------~~~g~~~l~~ 553 (1614)
-++.|||+-.-..+...+.-..+.+-.+++.+ +-+++|.|-. +-.-+..+|.
T Consensus 86 dlvIVDElG~~~~~~~r~~~~~qDV~~~l~sg---------------idVitT~Nlqh~esl~d~v~~itg~~v~e~vpd 150 (228)
T 2r8r_A 86 SLVLVDELAHTNAPGSRHTKRWQDIQELLAAG---------------IDVYTTVNVQHLESLNDQVRGITGVQVRETLPD 150 (228)
T ss_dssp SEEEESCTTCBCCTTCSSSBHHHHHHHHHHTT---------------CEEEEEEEGGGBGGGHHHHHHHHSCCCCSCBCH
T ss_pred CEEEEeCCCCCCcccchhHHHHHHHHHHHcCC---------------CCEEEEccccccccHHHHHHHHcCCCcCCcCcc
Confidence 35667998753333334444444444444433 3344555521 1123567899
Q ss_pred cccccccEEEecCCChhHHHHH
Q psy568 554 RFLRHVPVIYVDYPGETSLKQI 575 (1614)
Q Consensus 554 r~~r~f~~i~i~~p~~~~l~~I 575 (1614)
++.....-|.+-..+++++..-
T Consensus 151 ~~~~~a~~v~lvD~~p~~l~~r 172 (228)
T 2r8r_A 151 WVLQEAFDLVLIDLPPRELLER 172 (228)
T ss_dssp HHHHTCSEEEEBCCCHHHHHHH
T ss_pred HHHhhCCeEEEecCCHHHHHHH
Confidence 9998886555555556666555
No 234
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=92.87 E-value=0.047 Score=57.86 Aligned_cols=23 Identities=43% Similarity=0.703 Sum_probs=20.3
Q ss_pred EEEEecCCCCChhhHHHHHHHHH
Q psy568 45 GLMMVGPSGSGKSTAWKVLLKAL 67 (1614)
Q Consensus 45 gVmlvG~~gsGKTt~~~~L~~al 67 (1614)
-|+|+||+|+||||+.+.|.+.+
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 48999999999999999987764
No 235
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=92.87 E-value=0.043 Score=56.61 Aligned_cols=27 Identities=22% Similarity=0.442 Sum_probs=23.7
Q ss_pred HhccE--EEEecCCCCChhhHHHHHHHHH
Q psy568 41 NLNHG--LMMVGPSGSGKSTAWKVLLKAL 67 (1614)
Q Consensus 41 ~~r~g--VmlvG~~gsGKTt~~~~L~~al 67 (1614)
.++.| +.|+||.||||||+.+++++.+
T Consensus 29 ~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34555 8899999999999999999997
No 236
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=92.86 E-value=0.047 Score=58.33 Aligned_cols=25 Identities=32% Similarity=0.517 Sum_probs=21.7
Q ss_pred ccEEEEecCCCCChhhHHHHHHHHH
Q psy568 43 NHGLMMVGPSGSGKSTAWKVLLKAL 67 (1614)
Q Consensus 43 r~gVmlvG~~gsGKTt~~~~L~~al 67 (1614)
..-++|+||+||||||+.+.|.+.+
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhC
Confidence 3468899999999999999998764
No 237
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=92.86 E-value=0.046 Score=59.35 Aligned_cols=28 Identities=29% Similarity=0.493 Sum_probs=22.8
Q ss_pred HHhccEEEEecCCCCChhhHHHHHHHHH
Q psy568 40 SNLNHGLMMVGPSGSGKSTAWKVLLKAL 67 (1614)
Q Consensus 40 ~~~r~gVmlvG~~gsGKTt~~~~L~~al 67 (1614)
+.-..-+.|+||+||||||++++|.+.+
T Consensus 17 i~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 17 AAVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp --CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3444458999999999999999999875
No 238
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=92.85 E-value=0.13 Score=55.50 Aligned_cols=33 Identities=30% Similarity=0.249 Sum_probs=26.8
Q ss_pred ccEEEeecCCCChHHHHHHHHHHc---CCeEEEEEe
Q psy568 758 GHLLLIGVSGAGKTTLSRFVAFMN---GLSVFQIRA 790 (1614)
Q Consensus 758 gh~LLvG~~GsGKtsl~rlaA~~~---~~~~~~i~~ 790 (1614)
.+++|+|++|+|||++++.++... +..+..+..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~ 90 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYV 90 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEh
Confidence 579999999999999999888664 566666654
No 239
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=92.84 E-value=0.052 Score=57.02 Aligned_cols=24 Identities=38% Similarity=0.495 Sum_probs=21.6
Q ss_pred cEEEEecCCCCChhhHHHHHHHHH
Q psy568 44 HGLMMVGPSGSGKSTAWKVLLKAL 67 (1614)
Q Consensus 44 ~gVmlvG~~gsGKTt~~~~L~~al 67 (1614)
.-+.|+||+||||||+.+.|++.+
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhh
Confidence 358999999999999999998875
No 240
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=92.79 E-value=0.052 Score=57.92 Aligned_cols=25 Identities=28% Similarity=0.323 Sum_probs=22.9
Q ss_pred EEEEecCCCCChhhHHHHHHHHHHH
Q psy568 45 GLMMVGPSGSGKSTAWKVLLKALER 69 (1614)
Q Consensus 45 gVmlvG~~gsGKTt~~~~L~~al~~ 69 (1614)
-|+|.|++||||||+.+.|++.+..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4899999999999999999999864
No 241
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=92.79 E-value=0.051 Score=59.82 Aligned_cols=24 Identities=42% Similarity=0.618 Sum_probs=21.9
Q ss_pred cEEEEecCCCCChhhHHHHHHHHH
Q psy568 44 HGLMMVGPSGSGKSTAWKVLLKAL 67 (1614)
Q Consensus 44 ~gVmlvG~~gsGKTt~~~~L~~al 67 (1614)
.-|.|+||+||||||+.+.|++.+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999876
No 242
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=92.79 E-value=0.055 Score=60.50 Aligned_cols=31 Identities=26% Similarity=0.477 Sum_probs=22.4
Q ss_pred HHHHHhc-cEEEEecCCCCChhhHHHHHHHHH
Q psy568 37 YQISNLN-HGLMMVGPSGSGKSTAWKVLLKAL 67 (1614)
Q Consensus 37 ~e~~~~r-~gVmlvG~~gsGKTt~~~~L~~al 67 (1614)
++.|..+ .-|.|+||+||||||+.+.|++.+
T Consensus 20 ~~~~~~~~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 20 FQSMASKLLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp ------CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHhcCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3334433 469999999999999999999876
No 243
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=92.77 E-value=0.042 Score=59.49 Aligned_cols=25 Identities=40% Similarity=0.571 Sum_probs=22.1
Q ss_pred ccEEEEecCCCCChhhHHHHHHHHH
Q psy568 43 NHGLMMVGPSGSGKSTAWKVLLKAL 67 (1614)
Q Consensus 43 r~gVmlvG~~gsGKTt~~~~L~~al 67 (1614)
..-++|+||+||||||+.+.|++.+
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3468999999999999999998875
No 244
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=92.71 E-value=0.05 Score=57.34 Aligned_cols=22 Identities=32% Similarity=0.446 Sum_probs=20.1
Q ss_pred cEEEEecCCCCChhhHHHHHHH
Q psy568 44 HGLMMVGPSGSGKSTAWKVLLK 65 (1614)
Q Consensus 44 ~gVmlvG~~gsGKTt~~~~L~~ 65 (1614)
.-|+|+|+|||||||+.+.|++
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4589999999999999999988
No 245
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=92.70 E-value=0.056 Score=56.84 Aligned_cols=24 Identities=42% Similarity=0.620 Sum_probs=21.8
Q ss_pred EEEEecCCCCChhhHHHHHHHHHH
Q psy568 45 GLMMVGPSGSGKSTAWKVLLKALE 68 (1614)
Q Consensus 45 gVmlvG~~gsGKTt~~~~L~~al~ 68 (1614)
-|+|+||+||||||+.+.|++.+.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 488999999999999999998863
No 246
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=92.69 E-value=0.19 Score=53.24 Aligned_cols=81 Identities=19% Similarity=0.263 Sum_probs=47.8
Q ss_pred cEEEeecCCCChHHHH-HHHHHH--cCCeEEEEEecC--CCChhcHH------------HHHHHHHHHhccCCCcEEEEE
Q psy568 759 HLLLIGVSGAGKTTLS-RFVAFM--NGLSVFQIRAHN--KYTGADFD------------EDLRTVLRRSGCKNEKIAFLL 821 (1614)
Q Consensus 759 h~LLvG~~GsGKtsl~-rlaA~~--~~~~~~~i~~~~--~~~~~df~------------~~lk~~l~~ag~~~~~~v~ll 821 (1614)
-.+++|+.|+||||++ +++... .|.++..+.... .|+..... .++..++.. +.+..-++++
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~d~r~~~~~i~s~~g~~~~~~~~~~~~~~~~~--~~~~~dvviI 82 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKIDSRYHSTMIVSHSGNGVEAHVIERPEEMRKY--IEEDTRGVFI 82 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC-----CCCEECC----CEECEEESSGGGGGGG--CCTTEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeeccccccCcccEEecCCCceeeEEECCHHHHHHH--hcCCCCEEEE
Confidence 4679999999999986 666544 566665554331 12110000 001111211 1234568899
Q ss_pred cCCcccccchHHHHHHhhcc
Q psy568 822 DESNVLESGFLERMNTLLAN 841 (1614)
Q Consensus 822 ~d~~i~~~~~le~in~lL~~ 841 (1614)
|+.|..++++++.++.+...
T Consensus 83 DE~Q~~~~~~~~~l~~l~~~ 102 (184)
T 2orw_A 83 DEVQFFNPSLFEVVKDLLDR 102 (184)
T ss_dssp CCGGGSCTTHHHHHHHHHHT
T ss_pred ECcccCCHHHHHHHHHHHHC
Confidence 99999888888888877655
No 247
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=92.69 E-value=0.056 Score=57.21 Aligned_cols=27 Identities=30% Similarity=0.415 Sum_probs=23.4
Q ss_pred cCCCEEEecCCCCchHHHHHHHHhcCC
Q psy568 415 EHKPLVLCGPPGSGKTMTLLSALRALP 441 (1614)
Q Consensus 415 ~~~~vLL~Gp~GtGKT~lv~~~~~~l~ 441 (1614)
.|+.+.|+||+|+||||+++.++...+
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 467899999999999999998887663
No 248
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=92.68 E-value=0.057 Score=58.45 Aligned_cols=30 Identities=40% Similarity=0.795 Sum_probs=25.6
Q ss_pred HHhcCCCEEEecCCCCchHHHHHHHHhcCC
Q psy568 412 WLAEHKPLVLCGPPGSGKTMTLLSALRALP 441 (1614)
Q Consensus 412 ~l~~~~~vLL~Gp~GtGKT~lv~~~~~~l~ 441 (1614)
.+..|..++|+||+|+||||+++.++..++
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 345688999999999999999999888774
No 249
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=92.63 E-value=0.057 Score=58.15 Aligned_cols=27 Identities=37% Similarity=0.669 Sum_probs=21.7
Q ss_pred hcCCCEEEecCCCCchHHHHHHHHhcC
Q psy568 414 AEHKPLVLCGPPGSGKTMTLLSALRAL 440 (1614)
Q Consensus 414 ~~~~~vLL~Gp~GtGKT~lv~~~~~~l 440 (1614)
..|+.+.|+||+|+||||+++.++...
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 357899999999999999998887755
No 250
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=92.59 E-value=0.053 Score=57.81 Aligned_cols=21 Identities=43% Similarity=0.623 Sum_probs=19.3
Q ss_pred EEEEecCCCCChhhHHHHHHH
Q psy568 45 GLMMVGPSGSGKSTAWKVLLK 65 (1614)
Q Consensus 45 gVmlvG~~gsGKTt~~~~L~~ 65 (1614)
-+.|+||+||||||+.+.|++
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999976
No 251
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=92.58 E-value=3.1 Score=46.35 Aligned_cols=40 Identities=13% Similarity=0.222 Sum_probs=16.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHh
Q psy568 1313 AIKTDLDNVQAKVERSMALLKSLGIERERWEATSETFRSQ 1352 (1614)
Q Consensus 1313 ~l~~~~~~~~~rl~~a~~l~~~L~~e~~rW~~~~~~~~~~ 1352 (1614)
++..+++..+.+...++.=+..+....+.....+..++..
T Consensus 94 aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~ 133 (256)
T 3na7_A 94 SLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKE 133 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444433443333333
No 252
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=92.55 E-value=0.08 Score=57.01 Aligned_cols=32 Identities=31% Similarity=0.387 Sum_probs=27.6
Q ss_pred CCccEEEeecCCCChHHHHHHHHHHcCCeEEE
Q psy568 756 PQGHLLLIGVSGAGKTTLSRFVAFMNGLSVFQ 787 (1614)
Q Consensus 756 p~gh~LLvG~~GsGKtsl~rlaA~~~~~~~~~ 787 (1614)
+...++|+|++||||||+++.+|...|+.++.
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~ 55 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLNVPFID 55 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEE
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEc
Confidence 34478999999999999999999988887764
No 253
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=92.51 E-value=0.054 Score=58.60 Aligned_cols=24 Identities=33% Similarity=0.524 Sum_probs=21.2
Q ss_pred cEEEEecCCCCChhhHHHHHHHHH
Q psy568 44 HGLMMVGPSGSGKSTAWKVLLKAL 67 (1614)
Q Consensus 44 ~gVmlvG~~gsGKTt~~~~L~~al 67 (1614)
.-|.|+||+||||||+.+.|++.+
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 348899999999999999998865
No 254
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=92.48 E-value=0.23 Score=58.45 Aligned_cols=84 Identities=20% Similarity=0.252 Sum_probs=51.1
Q ss_pred hccCCccEEEeecCCCChHHHHHHHHHHc----CCeEEEEEecCCC----------------ChhcHHHHHHHHHHHhcc
Q psy568 753 FRQPQGHLLLIGVSGAGKTTLSRFVAFMN----GLSVFQIRAHNKY----------------TGADFDEDLRTVLRRSGC 812 (1614)
Q Consensus 753 l~~p~gh~LLvG~~GsGKtsl~rlaA~~~----~~~~~~i~~~~~~----------------~~~df~~~lk~~l~~ag~ 812 (1614)
+..|+|.++++||+||||||+.+.++... +..++.+.-.-.| +...|.+.| .++ .
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~L----a~a-L 193 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEAL----RSA-L 193 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHH----HHH-T
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHH----HHH-h
Confidence 45788999999999999999999776542 3444443311111 122344433 333 2
Q ss_pred CCCcEEEEEcCCcccccchHHHHHHhhccCC
Q psy568 813 KNEKIAFLLDESNVLESGFLERMNTLLANGE 843 (1614)
Q Consensus 813 ~~~~~v~ll~d~~i~~~~~le~in~lL~~G~ 843 (1614)
...|-+++++|. .+.+..+.+-.+..+|-
T Consensus 194 ~~~PdvillDEp--~d~e~~~~~~~~~~~G~ 222 (356)
T 3jvv_A 194 REDPDIILVGEM--RDLETIRLALTAAETGH 222 (356)
T ss_dssp TSCCSEEEESCC--CSHHHHHHHHHHHHTTC
T ss_pred hhCcCEEecCCC--CCHHHHHHHHHHHhcCC
Confidence 345667777765 46666666555555554
No 255
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=92.45 E-value=0.053 Score=57.89 Aligned_cols=25 Identities=24% Similarity=0.361 Sum_probs=22.4
Q ss_pred ccEEEEecCCCCChhhHHHHHHHHH
Q psy568 43 NHGLMMVGPSGSGKSTAWKVLLKAL 67 (1614)
Q Consensus 43 r~gVmlvG~~gsGKTt~~~~L~~al 67 (1614)
..-|+|+|++||||||+.+.|++.+
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 3468999999999999999999876
No 256
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=92.42 E-value=0.057 Score=57.59 Aligned_cols=35 Identities=29% Similarity=0.371 Sum_probs=26.0
Q ss_pred HhcCCCEEEecCCCCchHHHHHHHHhcCCCCceEEE
Q psy568 413 LAEHKPLVLCGPPGSGKTMTLLSALRALPDMEVVSL 448 (1614)
Q Consensus 413 l~~~~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i 448 (1614)
+..|.-+.|+||+||||||+++.++.. .+...+.+
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~-~~~g~i~i 40 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANL-PGVPKVHF 40 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTC-SSSCEEEE
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhc-cCCCeEEE
Confidence 345677999999999999999887765 34444444
No 257
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=92.41 E-value=0.056 Score=56.56 Aligned_cols=20 Identities=40% Similarity=0.564 Sum_probs=18.4
Q ss_pred cEEEEecCCCCChhhHHHHH
Q psy568 44 HGLMMVGPSGSGKSTAWKVL 63 (1614)
Q Consensus 44 ~gVmlvG~~gsGKTt~~~~L 63 (1614)
.-|+|+||+||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 45899999999999999999
No 258
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=92.40 E-value=0.084 Score=55.95 Aligned_cols=30 Identities=30% Similarity=0.523 Sum_probs=26.9
Q ss_pred ccEEEeecCCCChHHHHHHHHHHcCCeEEE
Q psy568 758 GHLLLIGVSGAGKTTLSRFVAFMNGLSVFQ 787 (1614)
Q Consensus 758 gh~LLvG~~GsGKtsl~rlaA~~~~~~~~~ 787 (1614)
-+++|+|++||||||+++.+|...|+.++.
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~l~~~~i~ 35 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKLTKRILYD 35 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCCEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 368999999999999999999998988774
No 259
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=92.40 E-value=0.068 Score=56.73 Aligned_cols=24 Identities=33% Similarity=0.653 Sum_probs=21.8
Q ss_pred cEEEEecCCCCChhhHHHHHHHHH
Q psy568 44 HGLMMVGPSGSGKSTAWKVLLKAL 67 (1614)
Q Consensus 44 ~gVmlvG~~gsGKTt~~~~L~~al 67 (1614)
.-|+|+|++||||||+.+.|++.+
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 458999999999999999999876
No 260
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=92.33 E-value=0.067 Score=56.50 Aligned_cols=25 Identities=28% Similarity=0.371 Sum_probs=22.4
Q ss_pred ccEEEEecCCCCChhhHHHHHHHHH
Q psy568 43 NHGLMMVGPSGSGKSTAWKVLLKAL 67 (1614)
Q Consensus 43 r~gVmlvG~~gsGKTt~~~~L~~al 67 (1614)
...|+|+|++||||||+.+.|++.+
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 3459999999999999999999886
No 261
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=92.26 E-value=0.045 Score=57.26 Aligned_cols=27 Identities=33% Similarity=0.364 Sum_probs=23.9
Q ss_pred cEEEEecCCCCChhhHHHHHHHHHHHh
Q psy568 44 HGLMMVGPSGSGKSTAWKVLLKALERY 70 (1614)
Q Consensus 44 ~gVmlvG~~gsGKTt~~~~L~~al~~~ 70 (1614)
..|.|||++||||||+.+.|.+.+..-
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~ 29 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRER 29 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 358899999999999999999998753
No 262
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=92.16 E-value=0.072 Score=56.90 Aligned_cols=27 Identities=33% Similarity=0.473 Sum_probs=24.1
Q ss_pred cCCCEEEecCCCCchHHHHHHHHhcCC
Q psy568 415 EHKPLVLCGPPGSGKTMTLLSALRALP 441 (1614)
Q Consensus 415 ~~~~vLL~Gp~GtGKT~lv~~~~~~l~ 441 (1614)
.|+.+.|+||+|+|||++++.+++..+
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 578899999999999999999888764
No 263
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=92.06 E-value=0.16 Score=58.79 Aligned_cols=64 Identities=27% Similarity=0.326 Sum_probs=45.0
Q ss_pred cEEEeecCCCChHHHHHHHHHHcCCeEEEE--------------------------------Ee-cCCCChhcHHHHHHH
Q psy568 759 HLLLIGVSGAGKTTLSRFVAFMNGLSVFQI--------------------------------RA-HNKYTGADFDEDLRT 805 (1614)
Q Consensus 759 h~LLvG~~GsGKtsl~rlaA~~~~~~~~~i--------------------------------~~-~~~~~~~df~~~lk~ 805 (1614)
.++|+||+|||||+|+..+|...+.+++.. .+ ...|+..+|++.-..
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~qvYr~mdIgTakp~~eE~~gvphhlidi~~~~~e~~s~~~F~~~a~~ 121 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQVYKGLDITTNKISVPDRGGVPHHLLGEVDPARGELTPADFRSLAGK 121 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHTTSCEEEEECCSSTTBSSCTTTTTCCCSGGGTTCCEESSSCBCGGGCCCCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHCCCcEEcccccccccceeeecCCCCHHHHcCCCEeeccccCcccCccCHHHHHHHHHH
Confidence 588999999999999999998888666542 12 356777888887777
Q ss_pred HHHHhccCCCcEEEEEcC
Q psy568 806 VLRRSGCKNEKIAFLLDE 823 (1614)
Q Consensus 806 ~l~~ag~~~~~~v~ll~d 823 (1614)
++...... .+++++.-.
T Consensus 122 ~i~~i~~~-g~~pIlvGG 138 (339)
T 3a8t_A 122 AVSEITGR-RKLPVLVGG 138 (339)
T ss_dssp HHHHHHHT-TCEEEEECC
T ss_pred HHHHHHhc-CCeEEEEcC
Confidence 76654333 344555433
No 264
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=92.05 E-value=0.076 Score=55.65 Aligned_cols=19 Identities=47% Similarity=0.546 Sum_probs=17.1
Q ss_pred EEEEecCCCCChhhHHHHH
Q psy568 45 GLMMVGPSGSGKSTAWKVL 63 (1614)
Q Consensus 45 gVmlvG~~gsGKTt~~~~L 63 (1614)
-+.|+||+||||||+.+.+
T Consensus 11 i~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4889999999999999974
No 265
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=92.04 E-value=0.11 Score=60.03 Aligned_cols=63 Identities=25% Similarity=0.392 Sum_probs=41.0
Q ss_pred EEEEecCCCCChhhHHHHHHHHHHHhhcCCceEEEeCCCCC-------------CcCc-------ccccccCCCCccccc
Q psy568 45 GLMMVGPSGSGKSTAWKVLLKALERYEGVEGVAHIIDPKAI-------------SKEA-------LYGVLDPNTREWTDG 104 (1614)
Q Consensus 45 gVmlvG~~gsGKTt~~~~L~~al~~~~~~~~~~~~inPkai-------------s~~e-------LyG~~d~~t~eW~DG 104 (1614)
-|+|+||||||||++-..|++.++ ..+||-.++ +.+| |++..++....+.-|
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~~l~--------~eiIs~Ds~qvYr~mdIgTakp~~eE~~gvphhlidi~~~~~e~~s~~ 113 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAAHFP--------LEVINSDKMQVYKGLDITTNKISVPDRGGVPHHLLGEVDPARGELTPA 113 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHTTSC--------EEEEECCSSTTBSSCTTTTTCCCSGGGTTCCEESSSCBCGGGCCCCHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHCC--------CcEEcccccccccceeeecCCCCHHHHcCCCEeeccccCcccCccCHH
Confidence 589999999999999999998763 124444333 2333 344455523466667
Q ss_pred hHHHHHHHHHh
Q psy568 105 LFTHILRRIID 115 (1614)
Q Consensus 105 vls~i~r~~~~ 115 (1614)
-|-...++...
T Consensus 114 ~F~~~a~~~i~ 124 (339)
T 3a8t_A 114 DFRSLAGKAVS 124 (339)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77776666544
No 266
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=91.94 E-value=0.12 Score=55.76 Aligned_cols=36 Identities=28% Similarity=0.424 Sum_probs=28.4
Q ss_pred cCCCEEEecCCCCchHHHHHHHHhcCCCCceEEEEc
Q psy568 415 EHKPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNF 450 (1614)
Q Consensus 415 ~~~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~ 450 (1614)
.+..|.|+|++||||||+++.+.+.+.+.+++.+..
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~ 38 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNF 38 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEES
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEec
Confidence 467799999999999999998888774455655543
No 267
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=91.94 E-value=0.084 Score=56.23 Aligned_cols=27 Identities=30% Similarity=0.529 Sum_probs=23.5
Q ss_pred EEEEecCCCCChhhHHHHHHHHHHHhhc
Q psy568 45 GLMMVGPSGSGKSTAWKVLLKALERYEG 72 (1614)
Q Consensus 45 gVmlvG~~gsGKTt~~~~L~~al~~~~~ 72 (1614)
-+.|+||+||||||+++.|++.+. -.|
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~-~~G 29 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK-SSG 29 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH-HTT
T ss_pred EEEEECCCCChHHHHHHHHHhhcc-cCC
Confidence 478999999999999999999886 434
No 268
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=91.92 E-value=0.077 Score=57.17 Aligned_cols=24 Identities=33% Similarity=0.443 Sum_probs=21.7
Q ss_pred EEEEecCCCCChhhHHHHHHHHHH
Q psy568 45 GLMMVGPSGSGKSTAWKVLLKALE 68 (1614)
Q Consensus 45 gVmlvG~~gsGKTt~~~~L~~al~ 68 (1614)
-|+|+|++||||||+.+.|++.+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 478999999999999999999874
No 269
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=91.88 E-value=0.1 Score=56.27 Aligned_cols=27 Identities=33% Similarity=0.224 Sum_probs=23.6
Q ss_pred cEEEEecCCCCChhhHHHHHHHHHHHh
Q psy568 44 HGLMMVGPSGSGKSTAWKVLLKALERY 70 (1614)
Q Consensus 44 ~gVmlvG~~gsGKTt~~~~L~~al~~~ 70 (1614)
.-|.|+||+||||||+.+.|.+.+...
T Consensus 23 ~~i~i~G~~GsGKstl~~~l~~~~~~~ 49 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLANQLSQTLREQ 49 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 358899999999999999999988654
No 270
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=91.86 E-value=0.12 Score=54.21 Aligned_cols=31 Identities=23% Similarity=0.241 Sum_probs=26.9
Q ss_pred cEEEeecCCCChHHHHHHHHHHcCCeEEEEE
Q psy568 759 HLLLIGVSGAGKTTLSRFVAFMNGLSVFQIR 789 (1614)
Q Consensus 759 h~LLvG~~GsGKtsl~rlaA~~~~~~~~~i~ 789 (1614)
.++|+|++||||||+++.+|...+..++.+.
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~l~~~~~~~~ 35 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSVLPEPWLAFG 35 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSSSCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCeEEec
Confidence 4889999999999999999999887766543
No 271
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=91.85 E-value=0.19 Score=57.19 Aligned_cols=76 Identities=17% Similarity=0.268 Sum_probs=53.9
Q ss_pred EEEeecCCCChHHHHHHHHHHcCCeEEEE--------------------------------EecCCCChhcHHHHHHHHH
Q psy568 760 LLLIGVSGAGKTTLSRFVAFMNGLSVFQI--------------------------------RAHNKYTGADFDEDLRTVL 807 (1614)
Q Consensus 760 ~LLvG~~GsGKtsl~rlaA~~~~~~~~~i--------------------------------~~~~~~~~~df~~~lk~~l 807 (1614)
++++||+|||||+++.-+|...+..++.. ++...|+..+|.++.+..+
T Consensus 6 i~i~GptgsGKt~la~~La~~~~~~iis~Ds~QvYr~~~igTakp~~~E~~gvphhlid~~~~~e~~s~~~F~~~a~~~i 85 (322)
T 3exa_A 6 VAIVGPTAVGKTKTSVMLAKRLNGEVISGDSMQVYRGMDIGTAKITAEEMDGVPHHLIDIKDPSESFSVADFQDLATPLI 85 (322)
T ss_dssp EEEECCTTSCHHHHHHHHHHTTTEEEEECCGGGGBTTCCTTTTCCCHHHHTTCCEESSSCBCTTSCCCHHHHHHHHHHHH
T ss_pred EEEECCCcCCHHHHHHHHHHhCccceeecCcccceeeeeecCCCCCHHHHcCCCEEEeccCChhhhccHHHHHHHHHHHH
Confidence 67899999999999998888777555432 1235678888999988888
Q ss_pred HHhccCCCcEEEEEcCCcccccchHHHHHHhhccCC
Q psy568 808 RRSGCKNEKIAFLLDESNVLESGFLERMNTLLANGE 843 (1614)
Q Consensus 808 ~~ag~~~~~~v~ll~d~~i~~~~~le~in~lL~~G~ 843 (1614)
...-..|+ +++++-.+.+ ++++|+.+-.
T Consensus 86 ~~i~~~gk-~pIlVGGTgl-------Yi~aLl~g~~ 113 (322)
T 3exa_A 86 TEIHERGR-LPFLVGGTGL-------YVNAVIHQFN 113 (322)
T ss_dssp HHHHHTTC-EEEEESCCHH-------HHHHHHHTCC
T ss_pred HHHHhCCC-cEEEEcCcHH-------HHHHHHcCCc
Confidence 77654554 5556544433 6788886533
No 272
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=91.85 E-value=0.082 Score=55.26 Aligned_cols=24 Identities=38% Similarity=0.571 Sum_probs=21.8
Q ss_pred EEEEecCCCCChhhHHHHHHHHHH
Q psy568 45 GLMMVGPSGSGKSTAWKVLLKALE 68 (1614)
Q Consensus 45 gVmlvG~~gsGKTt~~~~L~~al~ 68 (1614)
-|+|.|++||||||+.+.|++.+.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999999863
No 273
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=91.84 E-value=0.082 Score=56.10 Aligned_cols=30 Identities=23% Similarity=0.391 Sum_probs=23.9
Q ss_pred cCCCEEEecCCCCchHHHHHHHHhcCCCCc
Q psy568 415 EHKPLVLCGPPGSGKTMTLLSALRALPDME 444 (1614)
Q Consensus 415 ~~~~vLL~Gp~GtGKT~lv~~~~~~l~~~~ 444 (1614)
.+..++|+|++|||||++++.+...+.+.+
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~l~g~~ 38 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAELDGFQ 38 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHHSTTEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCE
Confidence 356799999999999999988887733433
No 274
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=91.81 E-value=0.077 Score=57.60 Aligned_cols=28 Identities=25% Similarity=0.370 Sum_probs=24.3
Q ss_pred hcCCCEEEecCCCCchHHHHHHHHhcCC
Q psy568 414 AEHKPLVLCGPPGSGKTMTLLSALRALP 441 (1614)
Q Consensus 414 ~~~~~vLL~Gp~GtGKT~lv~~~~~~l~ 441 (1614)
..|.-+.|+||+|+||||+++.++..++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4577899999999999999998888764
No 275
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=91.80 E-value=0.12 Score=54.07 Aligned_cols=28 Identities=32% Similarity=0.605 Sum_probs=25.0
Q ss_pred cEEEeecCCCChHHHHHHHHHHcCCeEE
Q psy568 759 HLLLIGVSGAGKTTLSRFVAFMNGLSVF 786 (1614)
Q Consensus 759 h~LLvG~~GsGKtsl~rlaA~~~~~~~~ 786 (1614)
.+.|+|++||||||+++.+|...+..++
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~l~~~~i 33 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQLNMEFY 33 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTTCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 5889999999999999999999887544
No 276
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=91.76 E-value=0.21 Score=62.99 Aligned_cols=84 Identities=21% Similarity=0.259 Sum_probs=52.0
Q ss_pred hccEEEEecCCCCChhhHHHHHHHHHHHhhcCCceEEEeCC--------------CCCCcCcccccccCCCCccccchHH
Q psy568 42 LNHGLMMVGPSGSGKSTAWKVLLKALERYEGVEGVAHIIDP--------------KAISKEALYGVLDPNTREWTDGLFT 107 (1614)
Q Consensus 42 ~r~gVmlvG~~gsGKTt~~~~L~~al~~~~~~~~~~~~inP--------------kais~~eLyG~~d~~t~eW~DGvls 107 (1614)
.+.-++|.|||||||||+++.+...+... +.. +..+.| .+.|...++|... + .|..+
T Consensus 203 ~~~~~~I~G~pGTGKTt~i~~l~~~l~~~-g~~--Vl~~ApT~~Aa~~L~e~~~~~a~Tih~ll~~~~--~-~~~~~--- 273 (574)
T 3e1s_A 203 GHRLVVLTGGPGTGKSTTTKAVADLAESL-GLE--VGLCAPTGKAARRLGEVTGRTASTVHRLLGYGP--Q-GFRHN--- 273 (574)
T ss_dssp TCSEEEEECCTTSCHHHHHHHHHHHHHHT-TCC--EEEEESSHHHHHHHHHHHTSCEEEHHHHTTEET--T-EESCS---
T ss_pred hCCEEEEEcCCCCCHHHHHHHHHHHHHhc-CCe--EEEecCcHHHHHHhHhhhcccHHHHHHHHcCCc--c-hhhhh---
Confidence 46788999999999999999999887653 222 222322 3445555555421 1 11110
Q ss_pred HHHHHHHhhhcCCCCCceEEEEc--cCCChhhhhhhhhh
Q psy568 108 HILRRIIDNVRGEISKRQWIIFD--GDVDPEWVENLNSV 144 (1614)
Q Consensus 108 ~i~r~~~~~~~~~~~~~~WivfD--G~vd~~WiE~lnsv 144 (1614)
.........||+| +.+|..|.+.|-..
T Consensus 274 ----------~~~~~~~dvlIIDEasml~~~~~~~Ll~~ 302 (574)
T 3e1s_A 274 ----------HLEPAPYDLLIVDEVSMMGDALMLSLLAA 302 (574)
T ss_dssp ----------SSSCCSCSEEEECCGGGCCHHHHHHHHTT
T ss_pred ----------hcccccCCEEEEcCccCCCHHHHHHHHHh
Confidence 0112235799999 78998888776443
No 277
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=91.74 E-value=0.086 Score=55.86 Aligned_cols=24 Identities=50% Similarity=0.570 Sum_probs=21.7
Q ss_pred EEEEecCCCCChhhHHHHHHHHHH
Q psy568 45 GLMMVGPSGSGKSTAWKVLLKALE 68 (1614)
Q Consensus 45 gVmlvG~~gsGKTt~~~~L~~al~ 68 (1614)
-|+|+|++||||||+-+.|++.+.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHcC
Confidence 489999999999999999999863
No 278
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=91.70 E-value=0.1 Score=56.03 Aligned_cols=29 Identities=24% Similarity=0.362 Sum_probs=24.5
Q ss_pred HHhccEEEEecCCCCChhhHHHHHHHHHH
Q psy568 40 SNLNHGLMMVGPSGSGKSTAWKVLLKALE 68 (1614)
Q Consensus 40 ~~~r~gVmlvG~~gsGKTt~~~~L~~al~ 68 (1614)
+.-..-|+|+|++||||||+.+.|++.+.
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 33456799999999999999999999863
No 279
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=91.68 E-value=0.086 Score=57.52 Aligned_cols=22 Identities=23% Similarity=0.549 Sum_probs=20.6
Q ss_pred EEEecCCCCChhhHHHHHHHHH
Q psy568 46 LMMVGPSGSGKSTAWKVLLKAL 67 (1614)
Q Consensus 46 VmlvG~~gsGKTt~~~~L~~al 67 (1614)
|+|.||+||||||+.+.|++.+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999998876
No 280
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=91.65 E-value=0.085 Score=59.23 Aligned_cols=23 Identities=22% Similarity=0.277 Sum_probs=21.0
Q ss_pred EEEEecCCCCChhhHHHHHHHHH
Q psy568 45 GLMMVGPSGSGKSTAWKVLLKAL 67 (1614)
Q Consensus 45 gVmlvG~~gsGKTt~~~~L~~al 67 (1614)
-++|+|||||||||+.+.|++.+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 47899999999999999999876
No 281
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=91.61 E-value=0.088 Score=57.26 Aligned_cols=26 Identities=27% Similarity=0.473 Sum_probs=22.5
Q ss_pred hccEEEEecCCCCChhhHHHHHHHHH
Q psy568 42 LNHGLMMVGPSGSGKSTAWKVLLKAL 67 (1614)
Q Consensus 42 ~r~gVmlvG~~gsGKTt~~~~L~~al 67 (1614)
-..-|+|+|||||||||..+.|++.+
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34468889999999999999999886
No 282
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=91.61 E-value=0.086 Score=60.46 Aligned_cols=25 Identities=32% Similarity=0.569 Sum_probs=22.7
Q ss_pred ccEEEEecCCCCChhhHHHHHHHHH
Q psy568 43 NHGLMMVGPSGSGKSTAWKVLLKAL 67 (1614)
Q Consensus 43 r~gVmlvG~~gsGKTt~~~~L~~al 67 (1614)
...|.||||+||||||++++|.+-+
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhhhc
Confidence 3469999999999999999999987
No 283
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=91.61 E-value=0.12 Score=63.98 Aligned_cols=45 Identities=27% Similarity=0.373 Sum_probs=34.6
Q ss_pred HHHHHHHHHhcCCCEEEecCCCCchHHHHHHHHhcCCC-CceEEEE
Q psy568 405 HESLLYTWLAEHKPLVLCGPPGSGKTMTLLSALRALPD-MEVVSLN 449 (1614)
Q Consensus 405 ~~~ll~~~l~~~~~vLL~Gp~GtGKT~lv~~~~~~l~~-~~~~~i~ 449 (1614)
....+...+..|..++++||+||||||+++.++..++. ...+.+.
T Consensus 249 ~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitie 294 (511)
T 2oap_1 249 VLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIE 294 (511)
T ss_dssp HHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEE
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEc
Confidence 34566778889999999999999999999988876642 3344443
No 284
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=91.60 E-value=0.089 Score=56.16 Aligned_cols=24 Identities=21% Similarity=0.407 Sum_probs=21.8
Q ss_pred cEEEEecCCCCChhhHHHHHHHHH
Q psy568 44 HGLMMVGPSGSGKSTAWKVLLKAL 67 (1614)
Q Consensus 44 ~gVmlvG~~gsGKTt~~~~L~~al 67 (1614)
.-|+|+|++||||||+.+.|++.+
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 458999999999999999999876
No 285
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=91.59 E-value=0.12 Score=59.74 Aligned_cols=28 Identities=32% Similarity=0.412 Sum_probs=24.3
Q ss_pred EEEEecCCCCChhhHHHHHHHHHHHhhc
Q psy568 45 GLMMVGPSGSGKSTAWKVLLKALERYEG 72 (1614)
Q Consensus 45 gVmlvG~~gsGKTt~~~~L~~al~~~~~ 72 (1614)
-|.|+||+||||||+.+.|++.+....|
T Consensus 92 ivgI~G~sGsGKSTL~~~L~gll~~~~G 119 (312)
T 3aez_A 92 IIGVAGSVAVGKSTTARVLQALLARWDH 119 (312)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTSTT
T ss_pred EEEEECCCCchHHHHHHHHHhhccccCC
Confidence 4889999999999999999999876433
No 286
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=91.58 E-value=0.091 Score=56.78 Aligned_cols=23 Identities=43% Similarity=0.592 Sum_probs=21.1
Q ss_pred EEEEecCCCCChhhHHHHHHHHH
Q psy568 45 GLMMVGPSGSGKSTAWKVLLKAL 67 (1614)
Q Consensus 45 gVmlvG~~gsGKTt~~~~L~~al 67 (1614)
-++|+|||||||+|..+.|++.+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999886
No 287
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=91.56 E-value=0.076 Score=67.00 Aligned_cols=34 Identities=32% Similarity=0.421 Sum_probs=25.9
Q ss_pred cCCCEEEecCCCCchHHHHHHHHhcC--CCCceEEE
Q psy568 415 EHKPLVLCGPPGSGKTMTLLSALRAL--PDMEVVSL 448 (1614)
Q Consensus 415 ~~~~vLL~Gp~GtGKT~lv~~~~~~l--~~~~~~~i 448 (1614)
.+..+++.||||||||+++..++..+ .+..+...
T Consensus 203 ~~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ 238 (574)
T 3e1s_A 203 GHRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLC 238 (574)
T ss_dssp TCSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred hCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 56789999999999999998888754 24444433
No 288
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=91.56 E-value=0.085 Score=57.88 Aligned_cols=25 Identities=24% Similarity=0.417 Sum_probs=22.3
Q ss_pred cEEEEecCCCCChhhHHHHHHHHHH
Q psy568 44 HGLMMVGPSGSGKSTAWKVLLKALE 68 (1614)
Q Consensus 44 ~gVmlvG~~gsGKTt~~~~L~~al~ 68 (1614)
.-|+|+||+||||||+.+.|++.+.
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3589999999999999999999874
No 289
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=91.51 E-value=0.062 Score=59.55 Aligned_cols=23 Identities=39% Similarity=0.463 Sum_probs=20.4
Q ss_pred EEEEecCCCCChhhHHHHHHHHH
Q psy568 45 GLMMVGPSGSGKSTAWKVLLKAL 67 (1614)
Q Consensus 45 gVmlvG~~gsGKTt~~~~L~~al 67 (1614)
-+.|+||+||||||+++++++-+
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 48899999999999999988764
No 290
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=91.50 E-value=0.18 Score=52.83 Aligned_cols=28 Identities=36% Similarity=0.277 Sum_probs=24.3
Q ss_pred ccEEEEecCCCCChhhHHHHHHHHHHHh
Q psy568 43 NHGLMMVGPSGSGKSTAWKVLLKALERY 70 (1614)
Q Consensus 43 r~gVmlvG~~gsGKTt~~~~L~~al~~~ 70 (1614)
..-++++|++||||||+++.|...+...
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~ 33 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCAR 33 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcccc
Confidence 3578999999999999999999987653
No 291
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=91.49 E-value=0.093 Score=56.54 Aligned_cols=23 Identities=35% Similarity=0.632 Sum_probs=21.5
Q ss_pred EEEEecCCCCChhhHHHHHHHHH
Q psy568 45 GLMMVGPSGSGKSTAWKVLLKAL 67 (1614)
Q Consensus 45 gVmlvG~~gsGKTt~~~~L~~al 67 (1614)
-|+|+|++||||||+.+.|++.+
T Consensus 22 ~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999886
No 292
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=91.46 E-value=0.079 Score=59.46 Aligned_cols=25 Identities=40% Similarity=0.577 Sum_probs=22.3
Q ss_pred ccEEEEecCCCCChhhHHHHHHHHH
Q psy568 43 NHGLMMVGPSGSGKSTAWKVLLKAL 67 (1614)
Q Consensus 43 r~gVmlvG~~gsGKTt~~~~L~~al 67 (1614)
..-|.|+||+||||||+.+.|++.|
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhc
Confidence 3468999999999999999999876
No 293
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=91.44 E-value=0.096 Score=60.34 Aligned_cols=27 Identities=26% Similarity=0.382 Sum_probs=23.9
Q ss_pred cEEEEecCCCCChhhHHHHHHHHHHHh
Q psy568 44 HGLMMVGPSGSGKSTAWKVLLKALERY 70 (1614)
Q Consensus 44 ~gVmlvG~~gsGKTt~~~~L~~al~~~ 70 (1614)
.-|+||||+||||||+++.|+..+..-
T Consensus 103 ~vi~lvG~nGsGKTTll~~Lagll~~~ 129 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTIAKLGRYYQNL 129 (304)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 368999999999999999999988653
No 294
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=91.40 E-value=0.12 Score=62.33 Aligned_cols=34 Identities=35% Similarity=0.617 Sum_probs=25.9
Q ss_pred HHHHHHhccE-EEEecCCCCChhhHHHHHHHHHHH
Q psy568 36 LYQISNLNHG-LMMVGPSGSGKSTAWKVLLKALER 69 (1614)
Q Consensus 36 L~e~~~~r~g-VmlvG~~gsGKTt~~~~L~~al~~ 69 (1614)
|.+.+..+.| |.|+||+||||||+++++.+.++.
T Consensus 159 L~~l~~~~ggii~I~GpnGSGKTTlL~allg~l~~ 193 (418)
T 1p9r_A 159 FRRLIKRPHGIILVTGPTGSGKSTTLYAGLQELNS 193 (418)
T ss_dssp HHHHHTSSSEEEEEECSTTSCHHHHHHHHHHHHCC
T ss_pred HHHHHHhcCCeEEEECCCCCCHHHHHHHHHhhcCC
Confidence 3333444555 689999999999999999988753
No 295
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=91.39 E-value=0.13 Score=56.03 Aligned_cols=48 Identities=27% Similarity=0.279 Sum_probs=36.0
Q ss_pred hcCCCEEEecCCCCchHHHHHHHHhcCCCCceEEEEcccCCCHHHHHhH
Q psy568 414 AEHKPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTPELLLKT 462 (1614)
Q Consensus 414 ~~~~~vLL~Gp~GtGKT~lv~~~~~~l~~~~~~~i~~s~~t~~~~l~~~ 462 (1614)
..|.-++|+||+|+|||+++..++. ..+..++.++.....++..+...
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~-~~~~~v~~i~~~~~~~~~~~~~~ 65 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGL-LSGKKVAYVDTEGGFSPERLVQM 65 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHH-HHCSEEEEEESSCCCCHHHHHHH
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHH-HcCCcEEEEECCCCCCHHHHHHH
Confidence 3567789999999999999999987 44566777777665566555443
No 296
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=91.36 E-value=0.12 Score=53.77 Aligned_cols=30 Identities=37% Similarity=0.637 Sum_probs=26.9
Q ss_pred ccEEEeecCCCChHHHHHHHHHHcCCeEEE
Q psy568 758 GHLLLIGVSGAGKTTLSRFVAFMNGLSVFQ 787 (1614)
Q Consensus 758 gh~LLvG~~GsGKtsl~rlaA~~~~~~~~~ 787 (1614)
.+++|.|++||||||+++.+|..+|++++.
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id 37 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLD 37 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 468999999999999999999988987764
No 297
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=91.34 E-value=0.1 Score=55.33 Aligned_cols=27 Identities=30% Similarity=0.334 Sum_probs=23.9
Q ss_pred cEEEEecCCCCChhhHHHHHHHHHHHh
Q psy568 44 HGLMMVGPSGSGKSTAWKVLLKALERY 70 (1614)
Q Consensus 44 ~gVmlvG~~gsGKTt~~~~L~~al~~~ 70 (1614)
.-|+|+|++||||||+.+.|++.+...
T Consensus 14 ~~i~l~G~~GsGKsT~~~~L~~~l~~~ 40 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIATRLADLLQKE 40 (186)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 458899999999999999999998753
No 298
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=91.33 E-value=0.1 Score=54.30 Aligned_cols=24 Identities=33% Similarity=0.448 Sum_probs=21.7
Q ss_pred EEEEecCCCCChhhHHHHHHHHHH
Q psy568 45 GLMMVGPSGSGKSTAWKVLLKALE 68 (1614)
Q Consensus 45 gVmlvG~~gsGKTt~~~~L~~al~ 68 (1614)
-|+|.|++||||||+.+.|++.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999999863
No 299
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=91.33 E-value=4.9 Score=37.49 Aligned_cols=49 Identities=20% Similarity=0.249 Sum_probs=21.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy568 1236 KKVEPLRLELKSLEVQASENKAKGEETKDLITQLEKSIASYKDEYAQLI 1284 (1614)
Q Consensus 1236 ~~v~P~~~~l~~~~~~~~~~~~~l~~~~~~l~~~e~~l~~l~~~~~~~~ 1284 (1614)
+++.-++.....+......++.++...+....+.+..+..++..+..+.
T Consensus 9 kKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE 57 (101)
T 3u59_A 9 KKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTE 57 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444444443333
No 300
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=91.33 E-value=0.12 Score=53.77 Aligned_cols=30 Identities=13% Similarity=0.056 Sum_probs=26.2
Q ss_pred cEEEeecCCCChHHHHHHHHHHcCCeEEEE
Q psy568 759 HLLLIGVSGAGKTTLSRFVAFMNGLSVFQI 788 (1614)
Q Consensus 759 h~LLvG~~GsGKtsl~rlaA~~~~~~~~~i 788 (1614)
.++|.|++||||||+++.+|...|+.++..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 32 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKG 32 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecC
Confidence 378999999999999999999889877643
No 301
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=91.27 E-value=0.083 Score=60.48 Aligned_cols=24 Identities=21% Similarity=0.487 Sum_probs=21.5
Q ss_pred cEEEEecCCCCChhhHHHHHHHHH
Q psy568 44 HGLMMVGPSGSGKSTAWKVLLKAL 67 (1614)
Q Consensus 44 ~gVmlvG~~gsGKTt~~~~L~~al 67 (1614)
..|+|+|||||||||+.+.|++.+
T Consensus 34 ~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 469999999999999999998764
No 302
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=91.26 E-value=0.14 Score=53.68 Aligned_cols=31 Identities=29% Similarity=0.428 Sum_probs=25.6
Q ss_pred CccEEEeecCCCChHHHHHHHHHHcCCeEEE
Q psy568 757 QGHLLLIGVSGAGKTTLSRFVAFMNGLSVFQ 787 (1614)
Q Consensus 757 ~gh~LLvG~~GsGKtsl~rlaA~~~~~~~~~ 787 (1614)
+..+.|+|++||||||+++.++...|..++.
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~ 38 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLHAAFLD 38 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhCcEEEe
Confidence 3457899999999999999999877766553
No 303
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=91.21 E-value=0.072 Score=58.90 Aligned_cols=23 Identities=43% Similarity=0.553 Sum_probs=14.7
Q ss_pred EEEEecCCCCChhhHHHHHH-HHH
Q psy568 45 GLMMVGPSGSGKSTAWKVLL-KAL 67 (1614)
Q Consensus 45 gVmlvG~~gsGKTt~~~~L~-~al 67 (1614)
-+.|+||+||||||+.+.|+ +.+
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp EEEEECSCC----CHHHHHHC---
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 37899999999999999999 764
No 304
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=91.18 E-value=0.1 Score=57.13 Aligned_cols=24 Identities=29% Similarity=0.563 Sum_probs=21.7
Q ss_pred cEEEEecCCCCChhhHHHHHHHHH
Q psy568 44 HGLMMVGPSGSGKSTAWKVLLKAL 67 (1614)
Q Consensus 44 ~gVmlvG~~gsGKTt~~~~L~~al 67 (1614)
.-|+|+|++||||||+.+.|++.+
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 358999999999999999999886
No 305
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=91.18 E-value=0.11 Score=56.82 Aligned_cols=33 Identities=33% Similarity=0.610 Sum_probs=24.4
Q ss_pred HHHHHhcCCCEEEecCCCCchHHHHHHHHhcCC
Q psy568 409 LYTWLAEHKPLVLCGPPGSGKTMTLLSALRALP 441 (1614)
Q Consensus 409 l~~~l~~~~~vLL~Gp~GtGKT~lv~~~~~~l~ 441 (1614)
+..-+..|..+.|+||+|+||||+++.++...+
T Consensus 16 isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~p 48 (218)
T 1z6g_A 16 PRGSMNNIYPLVICGPSGVGKGTLIKKLLNEFP 48 (218)
T ss_dssp ------CCCCEEEECSTTSSHHHHHHHHHHHST
T ss_pred CceecCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 344566899999999999999999998887664
No 306
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=91.16 E-value=0.18 Score=54.54 Aligned_cols=32 Identities=22% Similarity=0.181 Sum_probs=26.1
Q ss_pred HHhccEEEEecCCCCChhhHHHHHHHHHHHhhc
Q psy568 40 SNLNHGLMMVGPSGSGKSTAWKVLLKALERYEG 72 (1614)
Q Consensus 40 ~~~r~gVmlvG~~gsGKTt~~~~L~~al~~~~~ 72 (1614)
+....-+.|+||+||||||+++++++. ..-.|
T Consensus 19 i~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G 50 (208)
T 3b85_A 19 IDTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSK 50 (208)
T ss_dssp HHHCSEEEEECCTTSSTTHHHHHHHHH-HHHTT
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhcC-CCcCC
Confidence 355556899999999999999999998 55444
No 307
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=91.13 E-value=0.11 Score=55.30 Aligned_cols=26 Identities=35% Similarity=0.783 Sum_probs=22.2
Q ss_pred CCCEEEecCCCCchHHHHHHHHhcCC
Q psy568 416 HKPLVLCGPPGSGKTMTLLSALRALP 441 (1614)
Q Consensus 416 ~~~vLL~Gp~GtGKT~lv~~~~~~l~ 441 (1614)
++.+.|+||+|+||||+++.++..++
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46789999999999999988887663
No 308
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=91.13 E-value=0.12 Score=59.61 Aligned_cols=26 Identities=35% Similarity=0.506 Sum_probs=23.4
Q ss_pred EEEEecCCCCChhhHHHHHHHHHHHh
Q psy568 45 GLMMVGPSGSGKSTAWKVLLKALERY 70 (1614)
Q Consensus 45 gVmlvG~~gsGKTt~~~~L~~al~~~ 70 (1614)
-++||||+||||||+++.|+..+..-
T Consensus 102 vi~lvG~nGsGKTTll~~Lag~l~~~ 127 (302)
T 3b9q_A 102 VIMIVGVNGGGKTTSLGKLAHRLKNE 127 (302)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 58899999999999999999988653
No 309
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=91.11 E-value=0.21 Score=51.83 Aligned_cols=27 Identities=30% Similarity=0.233 Sum_probs=24.0
Q ss_pred cEEEEecCCCCChhhHHHHHHHHHHHh
Q psy568 44 HGLMMVGPSGSGKSTAWKVLLKALERY 70 (1614)
Q Consensus 44 ~gVmlvG~~gsGKTt~~~~L~~al~~~ 70 (1614)
..++++|++||||||+...|...|...
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~ 31 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVRE 31 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhc
Confidence 468999999999999999999998753
No 310
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=91.07 E-value=0.16 Score=71.53 Aligned_cols=80 Identities=23% Similarity=0.333 Sum_probs=56.2
Q ss_pred cCCccEE-EeecCCCChHHHHH-HHHHH--cCCeEEEEEecCCCChhcHHHHHHHHHHHhccCCCcEEEEEcCCcccccc
Q psy568 755 QPQGHLL-LIGVSGAGKTTLSR-FVAFM--NGLSVFQIRAHNKYTGADFDEDLRTVLRRSGCKNEKIAFLLDESNVLESG 830 (1614)
Q Consensus 755 ~p~gh~L-LvG~~GsGKtsl~r-laA~~--~~~~~~~i~~~~~~~~~df~~~lk~~l~~ag~~~~~~v~ll~d~~i~~~~ 830 (1614)
.|+|.++ +.||.+|||||++- .+|.. .|-....|..-...+.. ...+.|++-....+.-+|+ .+.
T Consensus 1772 ~p~g~~~e~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~--------~~~~~g~~~~~~~~~~p~~---~~~ 1840 (2050)
T 3cmu_A 1772 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPI--------YARKLGVDIDNLLCSQPDT---GEQ 1840 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHH--------HHHHTTCCTTTCEEECCSS---HHH
T ss_pred CcCCcEEEEECCCCcCHHHHHHHHHHHHhhcCCEEEEEcCccccCHH--------HHHHcCCCHHHeEEecCCc---HHH
Confidence 5888877 99999999999865 44443 46677777665555533 2345677776666655553 567
Q ss_pred hHHHHHHhhccCCCC
Q psy568 831 FLERMNTLLANGEIP 845 (1614)
Q Consensus 831 ~le~in~lL~~G~v~ 845 (1614)
-||....|+.+|-|-
T Consensus 1841 ~~~~~~~~~~~~~~~ 1855 (2050)
T 3cmu_A 1841 ALEICDALARSGAVD 1855 (2050)
T ss_dssp HHHHHHHHHHHTCCS
T ss_pred HHHHHHHHHhcCCCc
Confidence 899999999998653
No 311
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=91.06 E-value=0.1 Score=55.51 Aligned_cols=24 Identities=25% Similarity=0.512 Sum_probs=21.7
Q ss_pred cEEEEecCCCCChhhHHHHHHHHH
Q psy568 44 HGLMMVGPSGSGKSTAWKVLLKAL 67 (1614)
Q Consensus 44 ~gVmlvG~~gsGKTt~~~~L~~al 67 (1614)
.-|.|+|++||||||+.+.|++.+
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 358999999999999999999876
No 312
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=91.06 E-value=0.12 Score=56.83 Aligned_cols=28 Identities=32% Similarity=0.430 Sum_probs=22.7
Q ss_pred HHhccEEEEecCCCCChhhHHHHHHHHH
Q psy568 40 SNLNHGLMMVGPSGSGKSTAWKVLLKAL 67 (1614)
Q Consensus 40 ~~~r~gVmlvG~~gsGKTt~~~~L~~al 67 (1614)
+....-|.|+||+||||||+.+.|++.+
T Consensus 6 ~~~~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 6 VSGSLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp ---CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3345679999999999999999999886
No 313
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=91.01 E-value=0.11 Score=53.97 Aligned_cols=24 Identities=42% Similarity=0.469 Sum_probs=22.0
Q ss_pred EEEEecCCCCChhhHHHHHHHHHH
Q psy568 45 GLMMVGPSGSGKSTAWKVLLKALE 68 (1614)
Q Consensus 45 gVmlvG~~gsGKTt~~~~L~~al~ 68 (1614)
-|.|.|++||||||+-+.|++.+.
T Consensus 9 ~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999999873
No 314
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=91.01 E-value=0.15 Score=53.50 Aligned_cols=29 Identities=34% Similarity=0.542 Sum_probs=25.9
Q ss_pred cEEEeecCCCChHHHHHHHHHHcCCeEEE
Q psy568 759 HLLLIGVSGAGKTTLSRFVAFMNGLSVFQ 787 (1614)
Q Consensus 759 h~LLvG~~GsGKtsl~rlaA~~~~~~~~~ 787 (1614)
.++|+|++||||||+++.+|...|..++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d 34 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLD 34 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEc
Confidence 58999999999999999999988887653
No 315
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=91.01 E-value=0.29 Score=56.68 Aligned_cols=25 Identities=28% Similarity=0.444 Sum_probs=22.4
Q ss_pred cEEEEecCCCCChhhHHHHHHHHHH
Q psy568 44 HGLMMVGPSGSGKSTAWKVLLKALE 68 (1614)
Q Consensus 44 ~gVmlvG~~gsGKTt~~~~L~~al~ 68 (1614)
.-|.|+|||||||||+.+.|++.++
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 4689999999999999999999864
No 316
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=90.99 E-value=0.12 Score=60.09 Aligned_cols=27 Identities=37% Similarity=0.407 Sum_probs=24.2
Q ss_pred cEEEEecCCCCChhhHHHHHHHHHHHh
Q psy568 44 HGLMMVGPSGSGKSTAWKVLLKALERY 70 (1614)
Q Consensus 44 ~gVmlvG~~gsGKTt~~~~L~~al~~~ 70 (1614)
.-+++|||+||||||+++.|+..+...
T Consensus 130 ~vi~lvG~nGaGKTTll~~Lag~l~~~ 156 (328)
T 3e70_C 130 YVIMFVGFNGSGKTTTIAKLANWLKNH 156 (328)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 468999999999999999999988654
No 317
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=90.97 E-value=0.15 Score=58.14 Aligned_cols=24 Identities=33% Similarity=0.506 Sum_probs=21.4
Q ss_pred cEEEEecCCCCChhhHHHHHHHHH
Q psy568 44 HGLMMVGPSGSGKSTAWKVLLKAL 67 (1614)
Q Consensus 44 ~gVmlvG~~gsGKTt~~~~L~~al 67 (1614)
.-|+|+||||||||++...|++.+
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTT
T ss_pred cEEEEECCCcCCHHHHHHHHHHhC
Confidence 457899999999999999998875
No 318
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=90.93 E-value=0.18 Score=53.12 Aligned_cols=30 Identities=40% Similarity=0.597 Sum_probs=26.5
Q ss_pred ccEEEeecCCCChHHHHHHHHHHcCCeEEE
Q psy568 758 GHLLLIGVSGAGKTTLSRFVAFMNGLSVFQ 787 (1614)
Q Consensus 758 gh~LLvG~~GsGKtsl~rlaA~~~~~~~~~ 787 (1614)
..++|+|++||||||+++.+|...|+.++.
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~~~~~~~~ 41 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASKSGLKYIN 41 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHhCCeEEE
Confidence 369999999999999999999888887664
No 319
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=90.91 E-value=0.31 Score=57.61 Aligned_cols=73 Identities=18% Similarity=0.290 Sum_probs=51.8
Q ss_pred cEEEeecCCCChHHHHHHHHHHcCCeEEEE--------------------------------EecCCCChhcHHHHHHHH
Q psy568 759 HLLLIGVSGAGKTTLSRFVAFMNGLSVFQI--------------------------------RAHNKYTGADFDEDLRTV 806 (1614)
Q Consensus 759 h~LLvG~~GsGKtsl~rlaA~~~~~~~~~i--------------------------------~~~~~~~~~df~~~lk~~ 806 (1614)
-+++.||+|||||++++-+|...+..++.. .+...|+..+|.++-+.+
T Consensus 4 ~i~i~GptgsGKttla~~La~~~~~~iis~Ds~QvYr~l~i~T~kp~~~E~~gv~hhlid~~~~~~~~s~~~F~~~a~~~ 83 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYKDIPIITNKHPLQEREGIPHHVMNHVDWSEEYYSHRFETECMNA 83 (409)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHTEEEEECCTTTTBSSCTTTTTCCCGGGTTTCCEESCSCBCTTSCCCHHHHHHHHHHH
T ss_pred EEEEECcchhhHHHHHHHHHHHCCCeEeecCccceecccccccCCCCHHHHcCchhhcCCccChHhHhhHHHHHHHHHHH
Confidence 478999999999999998888777665542 122457788898888888
Q ss_pred HHHhccCCCcEEEEEcCCcccccchHHHHHHhh
Q psy568 807 LRRSGCKNEKIAFLLDESNVLESGFLERMNTLL 839 (1614)
Q Consensus 807 l~~ag~~~~~~v~ll~d~~i~~~~~le~in~lL 839 (1614)
+...-..|+ +++++-.+.+ ++++||
T Consensus 84 i~~i~~~g~-~pilVGGTgl-------Yi~aLl 108 (409)
T 3eph_A 84 IEDIHRRGK-IPIVVGGTHY-------YLQTLF 108 (409)
T ss_dssp HHHHHTTTC-EEEEECSCGG-------GGGGGG
T ss_pred HHHHHhcCC-CEEEECChHH-------HHHHHH
Confidence 777654544 5566655544 566777
No 320
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=90.89 E-value=0.11 Score=56.23 Aligned_cols=27 Identities=33% Similarity=0.399 Sum_probs=24.0
Q ss_pred ccEEEEecCCCCChhhHHHHHHHHHHH
Q psy568 43 NHGLMMVGPSGSGKSTAWKVLLKALER 69 (1614)
Q Consensus 43 r~gVmlvG~~gsGKTt~~~~L~~al~~ 69 (1614)
..-|+|.|++||||||+.+.|++.+..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~ 36 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKN 36 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 345899999999999999999998864
No 321
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=90.88 E-value=0.089 Score=58.39 Aligned_cols=24 Identities=25% Similarity=0.529 Sum_probs=21.0
Q ss_pred cEEEEecCCCCChhhHHHHHHHHH
Q psy568 44 HGLMMVGPSGSGKSTAWKVLLKAL 67 (1614)
Q Consensus 44 ~gVmlvG~~gsGKTt~~~~L~~al 67 (1614)
.-+.|+||+||||||+++++++.+
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 357899999999999999998764
No 322
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=90.88 E-value=0.11 Score=56.34 Aligned_cols=27 Identities=30% Similarity=0.311 Sum_probs=24.0
Q ss_pred cEEEEecCCCCChhhHHHHHHHHHHHh
Q psy568 44 HGLMMVGPSGSGKSTAWKVLLKALERY 70 (1614)
Q Consensus 44 ~gVmlvG~~gsGKTt~~~~L~~al~~~ 70 (1614)
.-|+|+|++||||||+.+.|++.+...
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~~l~~~ 36 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVEALCAA 36 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 458999999999999999999998653
No 323
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=90.86 E-value=0.095 Score=57.18 Aligned_cols=22 Identities=27% Similarity=0.539 Sum_probs=20.3
Q ss_pred EEEecCCCCChhhHHHHHHHHH
Q psy568 46 LMMVGPSGSGKSTAWKVLLKAL 67 (1614)
Q Consensus 46 VmlvG~~gsGKTt~~~~L~~al 67 (1614)
|+|.||+||||||+.+.|++.+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999998765
No 324
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=90.86 E-value=0.089 Score=57.95 Aligned_cols=24 Identities=25% Similarity=0.391 Sum_probs=21.8
Q ss_pred cEEEEecCCCCChhhHHHHHHHHH
Q psy568 44 HGLMMVGPSGSGKSTAWKVLLKAL 67 (1614)
Q Consensus 44 ~gVmlvG~~gsGKTt~~~~L~~al 67 (1614)
.-|+|+|++||||||+.+.|++.+
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 458999999999999999999875
No 325
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=90.85 E-value=0.12 Score=57.79 Aligned_cols=26 Identities=35% Similarity=0.598 Sum_probs=23.4
Q ss_pred ccEEEEecCCCCChhhHHHHHHHHHH
Q psy568 43 NHGLMMVGPSGSGKSTAWKVLLKALE 68 (1614)
Q Consensus 43 r~gVmlvG~~gsGKTt~~~~L~~al~ 68 (1614)
...|.|+|++||||||+.+.|++.+.
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45799999999999999999999873
No 326
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=90.79 E-value=0.17 Score=57.60 Aligned_cols=24 Identities=33% Similarity=0.551 Sum_probs=21.5
Q ss_pred cEEEEecCCCCChhhHHHHHHHHH
Q psy568 44 HGLMMVGPSGSGKSTAWKVLLKAL 67 (1614)
Q Consensus 44 ~gVmlvG~~gsGKTt~~~~L~~al 67 (1614)
.-|+|+||||||||++...|++.+
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCccCHHHHHHHHHHhC
Confidence 468899999999999999998875
No 327
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=90.74 E-value=0.12 Score=54.37 Aligned_cols=26 Identities=31% Similarity=0.319 Sum_probs=23.0
Q ss_pred cEEEEecCCCCChhhHHHHHHHHHHH
Q psy568 44 HGLMMVGPSGSGKSTAWKVLLKALER 69 (1614)
Q Consensus 44 ~gVmlvG~~gsGKTt~~~~L~~al~~ 69 (1614)
.-|.|+|++||||||+.+.|++.+..
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~l~~ 31 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEYLVC 31 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 34789999999999999999998854
No 328
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=90.74 E-value=0.17 Score=54.36 Aligned_cols=31 Identities=45% Similarity=0.677 Sum_probs=25.7
Q ss_pred CCccEEEeecCCCChHHHHHHHHHHcCCeEE
Q psy568 756 PQGHLLLIGVSGAGKTTLSRFVAFMNGLSVF 786 (1614)
Q Consensus 756 p~gh~LLvG~~GsGKtsl~rlaA~~~~~~~~ 786 (1614)
++..+.|+|++||||||+++.++...|..++
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i 58 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADETGLEFA 58 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCeEE
Confidence 3446889999999999999999988776544
No 329
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=90.73 E-value=0.1 Score=64.72 Aligned_cols=30 Identities=20% Similarity=0.355 Sum_probs=25.7
Q ss_pred HHHHhccEEEEecCCCCChhhHHHHHHHHH
Q psy568 38 QISNLNHGLMMVGPSGSGKSTAWKVLLKAL 67 (1614)
Q Consensus 38 e~~~~r~gVmlvG~~gsGKTt~~~~L~~al 67 (1614)
-.+..+.++.|+||+||||||++++|.+.+
T Consensus 255 ~~v~~g~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 255 LAIEHKFSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp HHHHTTCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred HHHhCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 345667789999999999999999998765
No 330
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=90.71 E-value=0.21 Score=58.03 Aligned_cols=42 Identities=33% Similarity=0.451 Sum_probs=31.2
Q ss_pred hHHHHHHHHHHHH---HhccEEEEecCCCCChhhHHHHHHHHHHH
Q psy568 28 PWMEKVLQLYQIS---NLNHGLMMVGPSGSGKSTAWKVLLKALER 69 (1614)
Q Consensus 28 ~~~~K~~qL~e~~---~~r~gVmlvG~~gsGKTt~~~~L~~al~~ 69 (1614)
..++++++..... ..+..++|+||+||||||+.+.|++.+..
T Consensus 6 ~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~ 50 (359)
T 2ga8_A 6 KLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIINE 50 (359)
T ss_dssp HHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 4455666655432 12456999999999999999999998864
No 331
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=90.70 E-value=0.086 Score=55.72 Aligned_cols=25 Identities=28% Similarity=0.379 Sum_probs=18.0
Q ss_pred cEEEEecCCCCChhhHHHHHHHHHH
Q psy568 44 HGLMMVGPSGSGKSTAWKVLLKALE 68 (1614)
Q Consensus 44 ~gVmlvG~~gsGKTt~~~~L~~al~ 68 (1614)
.-|+|.|++||||||+.+.|++.+.
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHST
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4589999999999999999988753
No 332
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=90.68 E-value=7.9 Score=36.08 Aligned_cols=61 Identities=15% Similarity=0.198 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q psy568 1242 RLELKSLEVQASENKAKGEETKDLITQLEKSIASYKDEYAQLIAQATAIKTDLDNVQAKFY 1302 (1614)
Q Consensus 1242 ~~~l~~~~~~~~~~~~~l~~~~~~l~~~e~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~~~ 1302 (1614)
+.++..++.+...+..+.+.++..+...+.+......++..+....+.++.+++..+..+.
T Consensus 8 KkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ 68 (101)
T 3u1c_A 8 KKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELH 68 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666677777777777777777777777777777777777767666665554443
No 333
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=90.68 E-value=0.083 Score=58.58 Aligned_cols=24 Identities=33% Similarity=0.538 Sum_probs=21.4
Q ss_pred EEEEecCCCCChhhHHHHHHHHHH
Q psy568 45 GLMMVGPSGSGKSTAWKVLLKALE 68 (1614)
Q Consensus 45 gVmlvG~~gsGKTt~~~~L~~al~ 68 (1614)
-+.|+||+||||||+++++++.+.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAEMD 56 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCSE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 588999999999999999988753
No 334
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=90.67 E-value=0.079 Score=58.24 Aligned_cols=23 Identities=39% Similarity=0.358 Sum_probs=20.3
Q ss_pred EEEEecCCCCChhhHHHHHHHHH
Q psy568 45 GLMMVGPSGSGKSTAWKVLLKAL 67 (1614)
Q Consensus 45 gVmlvG~~gsGKTt~~~~L~~al 67 (1614)
-+.|+||+||||||+++++++.+
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998764
No 335
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=90.63 E-value=0.57 Score=51.02 Aligned_cols=89 Identities=13% Similarity=0.094 Sum_probs=49.9
Q ss_pred hccCCccEEEeecCCCChHHHHH-HHHHH--cCCeEEEEEecCC----------CChh--c----HHHHHHHHHHHhccC
Q psy568 753 FRQPQGHLLLIGVSGAGKTTLSR-FVAFM--NGLSVFQIRAHNK----------YTGA--D----FDEDLRTVLRRSGCK 813 (1614)
Q Consensus 753 l~~p~gh~LLvG~~GsGKtsl~r-laA~~--~~~~~~~i~~~~~----------~~~~--d----f~~~lk~~l~~ag~~ 813 (1614)
+..+++-.++.|++|+||||++. ++..+ .|..+..++.... .+.. . -.+++...+...-..
T Consensus 8 ~~~~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~~ 87 (223)
T 2b8t_A 8 SKKIGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSRTGTSLPSVEVESAPEILNYIMSNSFN 87 (223)
T ss_dssp ---CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTSC
T ss_pred ccCCcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHhcCCCccccccCCHHHHHHHHHHHhhC
Confidence 44566667788999999998655 44444 4666666643321 1100 0 011333334433334
Q ss_pred CCcEEEEEcCCcccccchHHHHHHhhcc
Q psy568 814 NEKIAFLLDESNVLESGFLERMNTLLAN 841 (1614)
Q Consensus 814 ~~~~v~ll~d~~i~~~~~le~in~lL~~ 841 (1614)
+++-++++|+.|..+++.++.+..+.+.
T Consensus 88 ~~~dvViIDEaQ~l~~~~ve~l~~L~~~ 115 (223)
T 2b8t_A 88 DETKVIGIDEVQFFDDRICEVANILAEN 115 (223)
T ss_dssp TTCCEEEECSGGGSCTHHHHHHHHHHHT
T ss_pred CCCCEEEEecCccCcHHHHHHHHHHHhC
Confidence 4566888899888777676666655443
No 336
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=90.62 E-value=0.073 Score=57.90 Aligned_cols=25 Identities=28% Similarity=0.323 Sum_probs=22.6
Q ss_pred EEEEecCCCCChhhHHHHHHHHHHH
Q psy568 45 GLMMVGPSGSGKSTAWKVLLKALER 69 (1614)
Q Consensus 45 gVmlvG~~gsGKTt~~~~L~~al~~ 69 (1614)
-|+|+|++||||||+.+.|++.+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 3789999999999999999998864
No 337
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=90.62 E-value=0.18 Score=59.67 Aligned_cols=35 Identities=29% Similarity=0.495 Sum_probs=30.8
Q ss_pred HHHHHHHhcCCCEEEecCCCCchHHHHHHHHhcCC
Q psy568 407 SLLYTWLAEHKPLVLCGPPGSGKTMTLLSALRALP 441 (1614)
Q Consensus 407 ~ll~~~l~~~~~vLL~Gp~GtGKT~lv~~~~~~l~ 441 (1614)
..+...+..|..++|+||+|+||||+++.++...+
T Consensus 166 ~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 166 SFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp HHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred HHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 56778889999999999999999999988887653
No 338
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=90.59 E-value=0.099 Score=56.55 Aligned_cols=21 Identities=29% Similarity=0.347 Sum_probs=19.4
Q ss_pred EEEEecCCCCChhhHHHHHHH
Q psy568 45 GLMMVGPSGSGKSTAWKVLLK 65 (1614)
Q Consensus 45 gVmlvG~~gsGKTt~~~~L~~ 65 (1614)
-|.|+||+||||||+.+.|++
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999987
No 339
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=90.59 E-value=0.12 Score=55.68 Aligned_cols=27 Identities=26% Similarity=0.353 Sum_probs=23.1
Q ss_pred hcCCCEEEecCCCCchHHHHHHHHhcC
Q psy568 414 AEHKPLVLCGPPGSGKTMTLLSALRAL 440 (1614)
Q Consensus 414 ~~~~~vLL~Gp~GtGKT~lv~~~~~~l 440 (1614)
..|.-+.|+||+||||||+++.+...+
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 457789999999999999998887765
No 340
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=90.56 E-value=0.12 Score=56.25 Aligned_cols=23 Identities=17% Similarity=0.449 Sum_probs=21.1
Q ss_pred EEEEecCCCCChhhHHHHHHHHH
Q psy568 45 GLMMVGPSGSGKSTAWKVLLKAL 67 (1614)
Q Consensus 45 gVmlvG~~gsGKTt~~~~L~~al 67 (1614)
-|+|.|++||||||+.+.|++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999876
No 341
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=90.52 E-value=0.13 Score=56.53 Aligned_cols=23 Identities=30% Similarity=0.629 Sum_probs=21.1
Q ss_pred EEEEecCCCCChhhHHHHHHHHH
Q psy568 45 GLMMVGPSGSGKSTAWKVLLKAL 67 (1614)
Q Consensus 45 gVmlvG~~gsGKTt~~~~L~~al 67 (1614)
-|+|.|++||||||+.+.|++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999886
No 342
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=90.51 E-value=0.14 Score=55.71 Aligned_cols=30 Identities=33% Similarity=0.250 Sum_probs=24.9
Q ss_pred ccEEEEecCCCCChhhHHHHHHHHHHHhhc
Q psy568 43 NHGLMMVGPSGSGKSTAWKVLLKALERYEG 72 (1614)
Q Consensus 43 r~gVmlvG~~gsGKTt~~~~L~~al~~~~~ 72 (1614)
..-|+|+|++||||||+.+.|++.+..-.|
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g 54 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLVRDRR 54 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhccccC
Confidence 345889999999999999999999873334
No 343
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=90.51 E-value=1.2 Score=52.89 Aligned_cols=131 Identities=15% Similarity=0.257 Sum_probs=76.3
Q ss_pred ccChhHHHHHHHHHHHHHHhhh---cccchhhHHHHHHHHHHHHHHhccCCccEEEeecCCCChHHHHHHHHHHcCCe--
Q psy568 710 PVGTTELREYVQARLKVFYEEE---LDVQLVLFDEVLDHVLRIDRIFRQPQGHLLLIGVSGAGKTTLSRFVAFMNGLS-- 784 (1614)
Q Consensus 710 ~v~~~~l~~~~~~~l~~~~~~~---~~~~lvlf~~~i~hi~ri~Ril~~p~gh~LLvG~~GsGKtsl~rlaA~~~~~~-- 784 (1614)
|++.+++...+...+..+.... ....++--...+..+.+..+.+.....++++.|++|+||+.+++++....+..
T Consensus 102 P~~~~~L~~~i~~~l~~~~~~~~~~~~~~~ig~s~~~~~~~~~~~~~a~~~~~vli~GesGtGKe~lAr~ih~~s~r~~~ 181 (368)
T 3dzd_A 102 PFSVERFLLTIKHAFEEYSKKAPPQEEIEFVGEHPKILEIKRLIPKIAKSKAPVLITGESGTGKEIVARLIHRYSGRKGA 181 (368)
T ss_dssp SCCHHHHHHHHHHHHHHHSCCCCCCCCCCCCCCSHHHHHHHHHHHHHHTSCSCEEEECCTTSSHHHHHHHHHHHHCCCSC
T ss_pred CCCHHHHHHHHHHHHHHhhhhhcccccccccccchHHHHHHhhhhhhhccchhheEEeCCCchHHHHHHHHHHhccccCC
Confidence 3445566655555554332111 11223333455555666555556667789999999999999999998876544
Q ss_pred EEEEEecCCCChhcHHHHHHH---------------HHHHhccCCCcEEEEEcCCcccccchHHHHHHhhccCCCC
Q psy568 785 VFQIRAHNKYTGADFDEDLRT---------------VLRRSGCKNEKIAFLLDESNVLESGFLERMNTLLANGEIP 845 (1614)
Q Consensus 785 ~~~i~~~~~~~~~df~~~lk~---------------~l~~ag~~~~~~v~ll~d~~i~~~~~le~in~lL~~G~v~ 845 (1614)
++.+++..- ....+...|.. .+..| .+.++++|+-+-.+...-..+-.+|.+|.+.
T Consensus 182 fv~vnc~~~-~~~~~~~~lfg~~~g~~tga~~~~~g~~~~a----~~gtlfldei~~l~~~~Q~~Ll~~l~~~~~~ 252 (368)
T 3dzd_A 182 FVDLNCASI-PQELAESELFGHEKGAFTGALTRKKGKLELA----DQGTLFLDEVGELDQRVQAKLLRVLETGSFT 252 (368)
T ss_dssp EEEEESSSS-CTTTHHHHHHEECSCSSSSCCCCEECHHHHT----TTSEEEEETGGGSCHHHHHHHHHHHHHSEEC
T ss_pred cEEEEcccC-ChHHHHHHhcCccccccCCcccccCChHhhc----CCCeEEecChhhCCHHHHHHHHHHHHhCCcc
Confidence 777777643 22222222211 11111 1235777887666777777777777666543
No 344
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=90.48 E-value=0.13 Score=56.13 Aligned_cols=30 Identities=23% Similarity=0.520 Sum_probs=24.2
Q ss_pred HHhcCCCEEEecCCCCchHHHHHHHHhcCC
Q psy568 412 WLAEHKPLVLCGPPGSGKTMTLLSALRALP 441 (1614)
Q Consensus 412 ~l~~~~~vLL~Gp~GtGKT~lv~~~~~~l~ 441 (1614)
.+..|..+.|+||+|+||||+++.++...+
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 456788999999999999999998887664
No 345
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=90.42 E-value=0.091 Score=57.15 Aligned_cols=23 Identities=35% Similarity=0.486 Sum_probs=20.4
Q ss_pred EEEEecCCCCChhhHHHHHHHHH
Q psy568 45 GLMMVGPSGSGKSTAWKVLLKAL 67 (1614)
Q Consensus 45 gVmlvG~~gsGKTt~~~~L~~al 67 (1614)
-+.|+||+||||||++++|++.+
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999998764
No 346
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=90.39 E-value=0.13 Score=55.41 Aligned_cols=27 Identities=26% Similarity=0.529 Sum_probs=23.3
Q ss_pred hcCCCEEEecCCCCchHHHHHHHHhcC
Q psy568 414 AEHKPLVLCGPPGSGKTMTLLSALRAL 440 (1614)
Q Consensus 414 ~~~~~vLL~Gp~GtGKT~lv~~~~~~l 440 (1614)
..|.-+.|+||+||||||+++.++...
T Consensus 5 ~~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 5 NKANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 457778999999999999998888765
No 347
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=90.33 E-value=0.14 Score=54.60 Aligned_cols=26 Identities=35% Similarity=0.383 Sum_probs=22.8
Q ss_pred EEEEecCCCCChhhHHHHHHHHHHHh
Q psy568 45 GLMMVGPSGSGKSTAWKVLLKALERY 70 (1614)
Q Consensus 45 gVmlvG~~gsGKTt~~~~L~~al~~~ 70 (1614)
-|.|.|++||||||+.+.|++.+...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~ 27 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQK 27 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 37899999999999999999988643
No 348
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=90.31 E-value=0.095 Score=58.83 Aligned_cols=25 Identities=28% Similarity=0.546 Sum_probs=22.1
Q ss_pred cEEEEecCCCCChhhHHHHHHHHHH
Q psy568 44 HGLMMVGPSGSGKSTAWKVLLKALE 68 (1614)
Q Consensus 44 ~gVmlvG~~gsGKTt~~~~L~~al~ 68 (1614)
.-++|+|+|||||||+.+.|++.+.
T Consensus 33 ~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp EEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4689999999999999999988753
No 349
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=90.26 E-value=0.12 Score=55.71 Aligned_cols=22 Identities=32% Similarity=0.468 Sum_probs=20.2
Q ss_pred EEEEecCCCCChhhHHHHHHHHH
Q psy568 45 GLMMVGPSGSGKSTAWKVLLKAL 67 (1614)
Q Consensus 45 gVmlvG~~gsGKTt~~~~L~~al 67 (1614)
-|.|+|++||||||+.+.|++ +
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~ 24 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-L 24 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-T
T ss_pred EEEEECCCCcCHHHHHHHHHH-C
Confidence 478999999999999999998 5
No 350
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=90.26 E-value=7.5 Score=36.46 Aligned_cols=90 Identities=16% Similarity=0.229 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHh
Q psy568 1238 VEPLRLELKSLEVQASENKAKGEETKDLITQLEKSIASYKDEYAQLIAQATAIKTDLDNVQAKFYEYAQLIAQATAIKTD 1317 (1614)
Q Consensus 1238 v~P~~~~l~~~~~~~~~~~~~l~~~~~~l~~~e~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~ 1317 (1614)
|..+++.++.++.++++.+.+|+-+-.+|.+-+.++..++..-..-+++.-.+ .++
T Consensus 13 ia~L~~D~~s~~~eleEnqeEL~iVgkML~EEqgKVDQlqKRn~~HQKEi~~L------------------------rae 68 (167)
T 4gkw_A 13 VADLKQDTESLQKQLEENQEELEIVGNMLREEQGKVDQLQKRNVAHQKEIGKL------------------------RAE 68 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHH------------------------HHH
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHH
Q psy568 1318 LDNVQAKVERSMALLKSLGIERERWEATSETFRS 1351 (1614)
Q Consensus 1318 ~~~~~~rl~~a~~l~~~L~~e~~rW~~~~~~~~~ 1351 (1614)
+..++..++.|..++..=+.++..-.-.+..+..
T Consensus 69 ~~~~QRn~~K~~~~Lkrn~~qQnQQSlDiRKLrE 102 (167)
T 4gkw_A 69 LGTAQRNLEKADQLLKRNSQQQNQQSLDMRKLGE 102 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHhHHHHHHHHHhhhHHHhHhhhhHHHHHH
No 351
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=90.23 E-value=0.16 Score=58.04 Aligned_cols=25 Identities=32% Similarity=0.474 Sum_probs=21.8
Q ss_pred CCEEEecCCCCchHHHHHHHHhcCC
Q psy568 417 KPLVLCGPPGSGKTMTLLSALRALP 441 (1614)
Q Consensus 417 ~~vLL~Gp~GtGKT~lv~~~~~~l~ 441 (1614)
.-++|+|||||||||+++.++..++
T Consensus 34 ~livl~G~sGsGKSTla~~L~~~~~ 58 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRSAIFEETQ 58 (287)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4488999999999999999988763
No 352
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=90.20 E-value=0.095 Score=59.37 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=20.6
Q ss_pred EEEEecCCCCChhhHHHHHHHHH
Q psy568 45 GLMMVGPSGSGKSTAWKVLLKAL 67 (1614)
Q Consensus 45 gVmlvG~~gsGKTt~~~~L~~al 67 (1614)
-+.|+||+||||||++++|++.+
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 38899999999999999998864
No 353
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=90.19 E-value=0.14 Score=56.03 Aligned_cols=23 Identities=35% Similarity=0.661 Sum_probs=21.5
Q ss_pred EEEEecCCCCChhhHHHHHHHHH
Q psy568 45 GLMMVGPSGSGKSTAWKVLLKAL 67 (1614)
Q Consensus 45 gVmlvG~~gsGKTt~~~~L~~al 67 (1614)
-|+|+|++||||||+.+.|++.+
T Consensus 7 ~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 7 NLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999987
No 354
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=90.19 E-value=1.8 Score=55.02 Aligned_cols=49 Identities=6% Similarity=0.043 Sum_probs=38.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhh
Q psy568 1307 LIAQATAIKTDLDNVQAKVERSMALLKSLGIERERWEATSETFRSQMAT 1355 (1614)
Q Consensus 1307 ~~~~~~~l~~~~~~~~~rl~~a~~l~~~L~~e~~rW~~~~~~~~~~~~~ 1355 (1614)
..++.+.++++.+.++.+++..++.+..+..|...+..+++++..+...
T Consensus 535 ~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~ 583 (597)
T 3oja_B 535 KQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNR 583 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred hhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3344555677888888888888888889999999999998888877654
No 355
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=90.15 E-value=0.73 Score=58.03 Aligned_cols=130 Identities=15% Similarity=0.158 Sum_probs=69.4
Q ss_pred CCEEEecCCCCchHHHHHHHHh----cCCCC--ceEEEEcccCC--CHHHHHhHhhcccceee-------cCCc------
Q psy568 417 KPLVLCGPPGSGKTMTLLSALR----ALPDM--EVVSLNFSSAT--TPELLLKTFDHYCEYRK-------TPNG------ 475 (1614)
Q Consensus 417 ~~vLL~Gp~GtGKT~lv~~~~~----~l~~~--~~~~i~~s~~t--~~~~l~~~~~~~~~~~~-------~~~g------ 475 (1614)
.-|.++|+.|+|||++++.+.+ ...+. ..+.++.+... +...++..+-..+.... ...+
T Consensus 153 ~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~ 232 (549)
T 2a5y_B 153 FFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTSVVLK 232 (549)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHHHTTTSCCTTCCCCTTCCHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHHHhcCcccccccccccccHHHHH
Confidence 4578999999999999999995 22221 23566766654 44455444432221110 0000
Q ss_pred -cccccccCCc-eEEEEeccCCCCCccccCcccHHHHHHHHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCCCcc
Q psy568 476 -VILSPIQLGK-WLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSH 553 (1614)
Q Consensus 476 -~~~~p~~~gk-~~vlfiDdin~p~~d~~g~q~~lelLrqlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~ 553 (1614)
.+..-. .++ ++++.+||+.-. .+ + .|... ++..+|.|+.... +..
T Consensus 233 ~~l~~~L-~~~kr~LlVLDdv~~~------~~----~--~~~~~--------------~gs~ilvTTR~~~------v~~ 279 (549)
T 2a5y_B 233 RMICNAL-IDRPNTLFVFDDVVQE------ET----I--RWAQE--------------LRLRCLVTTRDVE------ISN 279 (549)
T ss_dssp HHHHHHH-TTSTTEEEEEEEECCH------HH----H--HHHHH--------------TTCEEEEEESBGG------GGG
T ss_pred HHHHHHH-cCCCcEEEEEECCCCc------hh----h--ccccc--------------CCCEEEEEcCCHH------HHH
Confidence 000111 243 788888998761 11 1 12111 3456677765321 211
Q ss_pred cccccccEEEecCCChhHHHHHHHHH
Q psy568 554 RFLRHVPVIYVDYPGETSLKQIYGTF 579 (1614)
Q Consensus 554 r~~r~f~~i~i~~p~~~~l~~I~~~~ 579 (1614)
.....-.++.++..+.++-..+|...
T Consensus 280 ~~~~~~~~~~l~~L~~~ea~~Lf~~~ 305 (549)
T 2a5y_B 280 AASQTCEFIEVTSLEIDECYDFLEAY 305 (549)
T ss_dssp GCCSCEEEEECCCCCHHHHHHHHHHT
T ss_pred HcCCCCeEEECCCCCHHHHHHHHHHH
Confidence 11111246788999998888887654
No 356
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=90.06 E-value=0.099 Score=58.90 Aligned_cols=23 Identities=35% Similarity=0.413 Sum_probs=20.3
Q ss_pred EEEEecCCCCChhhHHHHHHHHH
Q psy568 45 GLMMVGPSGSGKSTAWKVLLKAL 67 (1614)
Q Consensus 45 gVmlvG~~gsGKTt~~~~L~~al 67 (1614)
-+.|+||+||||||+++++++.+
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999988764
No 357
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=90.06 E-value=0.1 Score=58.29 Aligned_cols=23 Identities=43% Similarity=0.508 Sum_probs=20.6
Q ss_pred EEEEecCCCCChhhHHHHHHHHH
Q psy568 45 GLMMVGPSGSGKSTAWKVLLKAL 67 (1614)
Q Consensus 45 gVmlvG~~gsGKTt~~~~L~~al 67 (1614)
-+.|+||+||||||+++++++.+
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998764
No 358
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=90.05 E-value=0.15 Score=56.95 Aligned_cols=24 Identities=29% Similarity=0.371 Sum_probs=21.7
Q ss_pred EEEEecCCCCChhhHHHHHHHHHH
Q psy568 45 GLMMVGPSGSGKSTAWKVLLKALE 68 (1614)
Q Consensus 45 gVmlvG~~gsGKTt~~~~L~~al~ 68 (1614)
-|-|+||+||||||+.+.|++.+.
T Consensus 27 iigI~G~~GsGKSTl~k~L~~~lG 50 (245)
T 2jeo_A 27 LIGVSGGTASGKSTVCEKIMELLG 50 (245)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 378999999999999999999873
No 359
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=90.05 E-value=0.12 Score=55.59 Aligned_cols=23 Identities=30% Similarity=0.541 Sum_probs=20.9
Q ss_pred EEEEecCCCCChhhHHHHHHHHH
Q psy568 45 GLMMVGPSGSGKSTAWKVLLKAL 67 (1614)
Q Consensus 45 gVmlvG~~gsGKTt~~~~L~~al 67 (1614)
-|+|.|++||||||+.+.|++.+
T Consensus 17 ~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58899999999999999998875
No 360
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=90.03 E-value=0.13 Score=54.42 Aligned_cols=23 Identities=39% Similarity=0.453 Sum_probs=20.8
Q ss_pred EEEEecCCCCChhhHHHHHHHHH
Q psy568 45 GLMMVGPSGSGKSTAWKVLLKAL 67 (1614)
Q Consensus 45 gVmlvG~~gsGKTt~~~~L~~al 67 (1614)
-++|+||+||||||+++++..++
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHT
T ss_pred cEEEECCCCCCHHHHHHHHHHHH
Confidence 56899999999999999998885
No 361
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=90.02 E-value=0.11 Score=60.93 Aligned_cols=23 Identities=35% Similarity=0.489 Sum_probs=20.4
Q ss_pred EEEEecCCCCChhhHHHHHHHHH
Q psy568 45 GLMMVGPSGSGKSTAWKVLLKAL 67 (1614)
Q Consensus 45 gVmlvG~~gsGKTt~~~~L~~al 67 (1614)
-+.|+||+||||||+++++++-+
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 37899999999999999998864
No 362
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=90.00 E-value=0.37 Score=53.25 Aligned_cols=27 Identities=22% Similarity=0.400 Sum_probs=21.6
Q ss_pred HHHHhccEEEEecCCCCChhhHHHHHH
Q psy568 38 QISNLNHGLMMVGPSGSGKSTAWKVLL 64 (1614)
Q Consensus 38 e~~~~r~gVmlvG~~gsGKTt~~~~L~ 64 (1614)
+.+.....++++|||||||||++....
T Consensus 71 ~~i~~g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 71 EAISQNSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp HHHHHCSEEEEECCTTSSHHHHHHHHH
T ss_pred HHHhcCCEEEEEeCCCCCcHHhHHHHH
Confidence 344557889999999999999877654
No 363
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=89.93 E-value=0.17 Score=59.51 Aligned_cols=26 Identities=35% Similarity=0.506 Sum_probs=23.4
Q ss_pred EEEEecCCCCChhhHHHHHHHHHHHh
Q psy568 45 GLMMVGPSGSGKSTAWKVLLKALERY 70 (1614)
Q Consensus 45 gVmlvG~~gsGKTt~~~~L~~al~~~ 70 (1614)
-++||||+||||||+++.|+..+..-
T Consensus 159 vi~lvG~nGsGKTTll~~Lag~l~~~ 184 (359)
T 2og2_A 159 VIMIVGVNGGGKTTSLGKLAHRLKNE 184 (359)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred EEEEEcCCCChHHHHHHHHHhhcccc
Confidence 58999999999999999999988653
No 364
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=89.93 E-value=0.1 Score=58.07 Aligned_cols=23 Identities=39% Similarity=0.631 Sum_probs=20.7
Q ss_pred EEEEecCCCCChhhHHHHHHHHH
Q psy568 45 GLMMVGPSGSGKSTAWKVLLKAL 67 (1614)
Q Consensus 45 gVmlvG~~gsGKTt~~~~L~~al 67 (1614)
-+.|+||+||||||++++|++.+
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48899999999999999998764
No 365
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=89.92 E-value=0.1 Score=58.59 Aligned_cols=23 Identities=43% Similarity=0.660 Sum_probs=20.5
Q ss_pred EEEEecCCCCChhhHHHHHHHHH
Q psy568 45 GLMMVGPSGSGKSTAWKVLLKAL 67 (1614)
Q Consensus 45 gVmlvG~~gsGKTt~~~~L~~al 67 (1614)
-+.|+||+||||||+++++++.+
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998764
No 366
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=89.91 E-value=0.38 Score=53.50 Aligned_cols=30 Identities=23% Similarity=0.360 Sum_probs=25.9
Q ss_pred ccEEEeecCCCChHHHHHHHHHHcCCeEEE
Q psy568 758 GHLLLIGVSGAGKTTLSRFVAFMNGLSVFQ 787 (1614)
Q Consensus 758 gh~LLvG~~GsGKtsl~rlaA~~~~~~~~~ 787 (1614)
-.++|.|++||||||+++.++...|...+.
T Consensus 30 ~~I~l~G~~GsGKsT~a~~L~~~~g~~~is 59 (243)
T 3tlx_A 30 GRYIFLGAPGSGKGTQSLNLKKSHCYCHLS 59 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 358999999999999999999877877664
No 367
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=89.89 E-value=0.2 Score=52.98 Aligned_cols=29 Identities=31% Similarity=0.621 Sum_probs=25.9
Q ss_pred cEEEeecCCCChHHHHHHHHHHcCCeEEE
Q psy568 759 HLLLIGVSGAGKTTLSRFVAFMNGLSVFQ 787 (1614)
Q Consensus 759 h~LLvG~~GsGKtsl~rlaA~~~~~~~~~ 787 (1614)
.++|+|++||||||+++.+|...|..++.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVGLLD 32 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEEe
Confidence 48999999999999999999988987664
No 368
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=89.89 E-value=0.21 Score=52.13 Aligned_cols=29 Identities=28% Similarity=0.479 Sum_probs=25.8
Q ss_pred cEEEeecCCCChHHHHHHHHHHcCCeEEE
Q psy568 759 HLLLIGVSGAGKTTLSRFVAFMNGLSVFQ 787 (1614)
Q Consensus 759 h~LLvG~~GsGKtsl~rlaA~~~~~~~~~ 787 (1614)
.++|.|++||||||+++.+|..+|..++.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALGYEFVD 32 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEc
Confidence 48999999999999999999988887664
No 369
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=89.89 E-value=0.2 Score=53.28 Aligned_cols=29 Identities=31% Similarity=0.393 Sum_probs=25.1
Q ss_pred cEEEeecCCCChHHHHHHHHHHcCCeEEE
Q psy568 759 HLLLIGVSGAGKTTLSRFVAFMNGLSVFQ 787 (1614)
Q Consensus 759 h~LLvG~~GsGKtsl~rlaA~~~~~~~~~ 787 (1614)
.++|+|++||||||+++.++...|+.++.
T Consensus 7 ~I~l~G~~GsGKST~~~~L~~~l~~~~i~ 35 (193)
T 2rhm_A 7 LIIVTGHPATGKTTLSQALATGLRLPLLS 35 (193)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEec
Confidence 47899999999999999999877877654
No 370
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=89.87 E-value=0.16 Score=56.67 Aligned_cols=25 Identities=32% Similarity=0.414 Sum_probs=22.2
Q ss_pred ccEEEEecCCCCChhhHHHHHHHHH
Q psy568 43 NHGLMMVGPSGSGKSTAWKVLLKAL 67 (1614)
Q Consensus 43 r~gVmlvG~~gsGKTt~~~~L~~al 67 (1614)
..-|+|.|||||||||+.+.|++.+
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3459999999999999999999876
No 371
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=89.84 E-value=0.11 Score=57.81 Aligned_cols=23 Identities=22% Similarity=0.481 Sum_probs=20.5
Q ss_pred EEEEecCCCCChhhHHHHHHHHH
Q psy568 45 GLMMVGPSGSGKSTAWKVLLKAL 67 (1614)
Q Consensus 45 gVmlvG~~gsGKTt~~~~L~~al 67 (1614)
-+.|+||+||||||++++|++.+
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37899999999999999998764
No 372
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=89.82 E-value=0.25 Score=56.72 Aligned_cols=39 Identities=18% Similarity=0.158 Sum_probs=29.2
Q ss_pred cEEEEecCCCCChhhHHHHHHHHHHHhhcCCceEEEeCC
Q psy568 44 HGLMMVGPSGSGKSTAWKVLLKALERYEGVEGVAHIIDP 82 (1614)
Q Consensus 44 ~gVmlvG~~gsGKTt~~~~L~~al~~~~~~~~~~~~inP 82 (1614)
.-++++||+|+||||+...|+..+..-.|..+.+.-.+|
T Consensus 106 ~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~ 144 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDT 144 (296)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCc
Confidence 469999999999999999999998753454433333444
No 373
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=89.80 E-value=0.23 Score=52.63 Aligned_cols=29 Identities=28% Similarity=0.667 Sum_probs=25.6
Q ss_pred cEEEeecCCCChHHHHHHHHHH-cCCeEEE
Q psy568 759 HLLLIGVSGAGKTTLSRFVAFM-NGLSVFQ 787 (1614)
Q Consensus 759 h~LLvG~~GsGKtsl~rlaA~~-~~~~~~~ 787 (1614)
.++|+|++||||||+++.+|.. .|+.++.
T Consensus 12 ~I~l~G~~GsGKSTv~~~La~~l~g~~~id 41 (184)
T 1y63_A 12 NILITGTPGTGKTSMAEMIAAELDGFQHLE 41 (184)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSTTEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCEEee
Confidence 5889999999999999999988 7877764
No 374
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=89.73 E-value=0.1 Score=58.85 Aligned_cols=23 Identities=39% Similarity=0.674 Sum_probs=20.4
Q ss_pred EEEEecCCCCChhhHHHHHHHHH
Q psy568 45 GLMMVGPSGSGKSTAWKVLLKAL 67 (1614)
Q Consensus 45 gVmlvG~~gsGKTt~~~~L~~al 67 (1614)
-+.|+||+||||||+.+++++-+
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47899999999999999998764
No 375
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=89.68 E-value=0.11 Score=58.41 Aligned_cols=23 Identities=43% Similarity=0.554 Sum_probs=20.7
Q ss_pred EEEEecCCCCChhhHHHHHHHHH
Q psy568 45 GLMMVGPSGSGKSTAWKVLLKAL 67 (1614)
Q Consensus 45 gVmlvG~~gsGKTt~~~~L~~al 67 (1614)
-+.|+||+||||||++++|++.+
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 48899999999999999998764
No 376
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=89.67 E-value=0.13 Score=57.53 Aligned_cols=22 Identities=41% Similarity=0.581 Sum_probs=20.1
Q ss_pred EEEEecCCCCChhhHHHHHHHH
Q psy568 45 GLMMVGPSGSGKSTAWKVLLKA 66 (1614)
Q Consensus 45 gVmlvG~~gsGKTt~~~~L~~a 66 (1614)
-+.|+||+||||||+++++++.
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999885
No 377
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=89.64 E-value=0.14 Score=56.19 Aligned_cols=25 Identities=24% Similarity=0.205 Sum_probs=21.8
Q ss_pred ccEEEEecCCCCChhhHHHHHHHHH
Q psy568 43 NHGLMMVGPSGSGKSTAWKVLLKAL 67 (1614)
Q Consensus 43 r~gVmlvG~~gsGKTt~~~~L~~al 67 (1614)
..-+.|+||+||||||+.+.++..+
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3458999999999999999999864
No 378
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=89.64 E-value=0.14 Score=60.81 Aligned_cols=30 Identities=30% Similarity=0.546 Sum_probs=25.2
Q ss_pred HHHhccEEEEecCCCCChhhHHHHHHHHHH
Q psy568 39 ISNLNHGLMMVGPSGSGKSTAWKVLLKALE 68 (1614)
Q Consensus 39 ~~~~r~gVmlvG~~gsGKTt~~~~L~~al~ 68 (1614)
.+..+.-+.|+||+||||||+++.|.+.+.
T Consensus 171 ~i~~G~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 171 AVQLERVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp HHHTTCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred HHhcCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 455566799999999999999999988653
No 379
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=89.63 E-value=0.21 Score=53.77 Aligned_cols=29 Identities=28% Similarity=0.582 Sum_probs=25.5
Q ss_pred cEEEeecCCCChHHHHHHHHHHcCCeEEE
Q psy568 759 HLLLIGVSGAGKTTLSRFVAFMNGLSVFQ 787 (1614)
Q Consensus 759 h~LLvG~~GsGKtsl~rlaA~~~~~~~~~ 787 (1614)
.++|+|++||||||+++.++...|..++.
T Consensus 20 ~I~l~G~~GsGKSTla~~L~~~lg~~~i~ 48 (202)
T 3t61_A 20 SIVVMGVSGSGKSSVGEAIAEACGYPFIE 48 (202)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHHTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCEEEe
Confidence 58999999999999999999888876654
No 380
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=89.63 E-value=0.58 Score=57.86 Aligned_cols=148 Identities=14% Similarity=0.186 Sum_probs=0.0
Q ss_pred HhcCCCEEEecCCCCchHHHHHHHHhcC------CCCceEEEEcc----------------cCCCHHHHHhHhhccccee
Q psy568 413 LAEHKPLVLCGPPGSGKTMTLLSALRAL------PDMEVVSLNFS----------------SATTPELLLKTFDHYCEYR 470 (1614)
Q Consensus 413 l~~~~~vLL~Gp~GtGKT~lv~~~~~~l------~~~~~~~i~~s----------------~~t~~~~l~~~~~~~~~~~ 470 (1614)
+...-|+|+.|.||+|||++++.++..+ ....++.+++. -.+++......+......-
T Consensus 211 L~k~pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpKg~eLs~~~~lPHl~~~Vvtd~~~a~~~L~~lv~EM 290 (574)
T 2iut_A 211 LAKMPHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPKMLELSIYEGIPHLLCPVVTDMKEAANALRWSVAEM 290 (574)
T ss_dssp GGGSCCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSSSHHHHTTTTCTTBSSSCBCCHHHHHHHHHHHHHHH
T ss_pred hhhCCeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCChhhhHhhcCCCcccceeeCCHHHHHHHHHHHHHHH
Q ss_pred ecCCccccc--------------------------------------cccCCceEEEEeccCCCCCccccCcccHHHHHH
Q psy568 471 KTPNGVILS--------------------------------------PIQLGKWLVLFCDEINLPDMDKYATQRVISFLR 512 (1614)
Q Consensus 471 ~~~~g~~~~--------------------------------------p~~~gk~~vlfiDdin~p~~d~~g~q~~lelLr 512 (1614)
..+...+-. +...-..++++|||++.-... ....+.+.|.
T Consensus 291 erR~~ll~~~gvrni~~Yn~~~~~~~~~G~~~~dp~~~~~~~~~~~~~~~~lP~ivvVIDE~~~L~~~--~~~~~~~~L~ 368 (574)
T 2iut_A 291 ERRYRLMAAMGVRNLAGFNRKVKDAEEAGTPLTDPLFRRESPDDEPPQLSTLPTIVVVVDEFADMMMI--VGKKVEELIA 368 (574)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHTTCCCBCTTCCCCSTTCCCCBCCCCCEEEEEESCCTTHHHH--TCHHHHHHHH
T ss_pred HHHHHHHHHcCCccHHHHHHHHHHHhhcccccccccccccccccccccccCCCcEEEEEeCHHHHhhh--hhHHHHHHHH
Q ss_pred HHHHcCceeeCCCCceEeecCeEEEEeecCCCCCCCCCCccccccccc-EEEecCCChhHHHHHH
Q psy568 513 QLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLRHVP-VIYVDYPGETSLKQIY 576 (1614)
Q Consensus 513 qlld~~~~~~~~~~~~~~~~~~~~iaa~n~~~~~g~~~l~~r~~r~f~-~i~i~~p~~~~l~~I~ 576 (1614)
++...|.=+ ++.+|.|+..|+ ...++..+...|. .|.+...+..+...|+
T Consensus 369 ~Iar~GRa~-----------GIhLIlaTQRPs---~d~I~~~Iran~~~RI~lrv~s~~Dsr~IL 419 (574)
T 2iut_A 369 RIAQKARAA-----------GIHLILATQRPS---VDVITGLIKANIPTRIAFQVSSKIDSRTIL 419 (574)
T ss_dssp HHHHHCTTT-----------TEEEEEEESCCC---TTTSCHHHHHTCCEEEEECCSCHHHHHHHH
T ss_pred HHHHHHhhC-----------CeEEEEEecCcc---cccccHHHHhhhccEEEEEcCCHHHHHHhc
No 381
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=89.62 E-value=0.11 Score=57.14 Aligned_cols=24 Identities=29% Similarity=0.556 Sum_probs=21.2
Q ss_pred EEEEecCCCCChhhHHHHHHHHHH
Q psy568 45 GLMMVGPSGSGKSTAWKVLLKALE 68 (1614)
Q Consensus 45 gVmlvG~~gsGKTt~~~~L~~al~ 68 (1614)
-+.|+||+||||||+++++++.+.
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 478999999999999999988753
No 382
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=89.61 E-value=0.18 Score=57.63 Aligned_cols=27 Identities=30% Similarity=0.343 Sum_probs=23.8
Q ss_pred cEEEEecCCCCChhhHHHHHHHHHHHh
Q psy568 44 HGLMMVGPSGSGKSTAWKVLLKALERY 70 (1614)
Q Consensus 44 ~gVmlvG~~gsGKTt~~~~L~~al~~~ 70 (1614)
.-|.|+||+||||||+.+.|++.+...
T Consensus 32 ~ii~I~G~sGsGKSTla~~L~~~l~~~ 58 (290)
T 1odf_A 32 LFIFFSGPQGSGKSFTSIQIYNHLMEK 58 (290)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 457899999999999999999998753
No 383
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=89.61 E-value=0.13 Score=60.81 Aligned_cols=23 Identities=39% Similarity=0.576 Sum_probs=20.5
Q ss_pred EEEEecCCCCChhhHHHHHHHHH
Q psy568 45 GLMMVGPSGSGKSTAWKVLLKAL 67 (1614)
Q Consensus 45 gVmlvG~~gsGKTt~~~~L~~al 67 (1614)
-+.|+||+||||||+++++++-+
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 37899999999999999998864
No 384
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=89.60 E-value=0.13 Score=58.09 Aligned_cols=22 Identities=41% Similarity=0.498 Sum_probs=20.1
Q ss_pred EEEEecCCCCChhhHHHHHHHH
Q psy568 45 GLMMVGPSGSGKSTAWKVLLKA 66 (1614)
Q Consensus 45 gVmlvG~~gsGKTt~~~~L~~a 66 (1614)
-+.|+||+||||||+++++++.
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999885
No 385
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=89.58 E-value=0.21 Score=52.85 Aligned_cols=28 Identities=29% Similarity=0.426 Sum_probs=24.5
Q ss_pred cEEEeecCCCChHHHHHHHHHHcCCeEE
Q psy568 759 HLLLIGVSGAGKTTLSRFVAFMNGLSVF 786 (1614)
Q Consensus 759 h~LLvG~~GsGKtsl~rlaA~~~~~~~~ 786 (1614)
.++|+|++||||||+++.+|...|+.++
T Consensus 6 ~I~l~G~~GsGKST~~~~La~~l~~~~i 33 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQELGFKKL 33 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 5789999999999999999987787654
No 386
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=89.58 E-value=0.11 Score=58.32 Aligned_cols=23 Identities=43% Similarity=0.567 Sum_probs=20.4
Q ss_pred EEEEecCCCCChhhHHHHHHHHH
Q psy568 45 GLMMVGPSGSGKSTAWKVLLKAL 67 (1614)
Q Consensus 45 gVmlvG~~gsGKTt~~~~L~~al 67 (1614)
-+.|+||+||||||++++|++.+
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Confidence 47899999999999999998764
No 387
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=89.57 E-value=0.24 Score=54.07 Aligned_cols=30 Identities=27% Similarity=0.233 Sum_probs=25.9
Q ss_pred ccEEEeecCCCChHHHHHHHHHHcCCeEEE
Q psy568 758 GHLLLIGVSGAGKTTLSRFVAFMNGLSVFQ 787 (1614)
Q Consensus 758 gh~LLvG~~GsGKtsl~rlaA~~~~~~~~~ 787 (1614)
-.++|+|++||||||+++.+|...|..++.
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~ 34 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERFHAAHLA 34 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCceEEe
Confidence 358899999999999999999888876553
No 388
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=89.55 E-value=0.21 Score=58.26 Aligned_cols=36 Identities=31% Similarity=0.420 Sum_probs=30.4
Q ss_pred HHHHHHHHHhcCCCEEEecCCCCchHHHHHHHHhcC
Q psy568 405 HESLLYTWLAEHKPLVLCGPPGSGKTMTLLSALRAL 440 (1614)
Q Consensus 405 ~~~ll~~~l~~~~~vLL~Gp~GtGKT~lv~~~~~~l 440 (1614)
....+...+..|..++++||+|+||||+++.++...
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGS
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 455677788899999999999999999998777655
No 389
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=89.53 E-value=0.17 Score=55.90 Aligned_cols=22 Identities=36% Similarity=0.631 Sum_probs=0.0
Q ss_pred EEEecCCCCChhhHHHHHHHHH
Q psy568 46 LMMVGPSGSGKSTAWKVLLKAL 67 (1614)
Q Consensus 46 VmlvG~~gsGKTt~~~~L~~al 67 (1614)
|+|+|++||||||+.+.|++.+
T Consensus 19 I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 19 AVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
No 390
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=89.49 E-value=3.8 Score=37.22 Aligned_cols=53 Identities=15% Similarity=0.194 Sum_probs=26.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy568 1238 VEPLRLELKSLEVQASENKAKGEETKDLITQLEKSIASYKDEYAQLIAQATAIK 1291 (1614)
Q Consensus 1238 v~P~~~~l~~~~~~~~~~~~~l~~~~~~l~~~e~~l~~l~~~~~~~~~~~~~l~ 1291 (1614)
|+|+-. ....+.++.....++..+++.+...+.....+...+..+..++..|.
T Consensus 3 VKPLL~-~~~~eeEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~ 55 (89)
T 3bas_A 3 HMPLLS-IARQEEEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLF 55 (89)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455532 23344455555555555555565555655666666666555555553
No 391
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=89.47 E-value=0.13 Score=60.20 Aligned_cols=23 Identities=35% Similarity=0.550 Sum_probs=20.4
Q ss_pred EEEEecCCCCChhhHHHHHHHHH
Q psy568 45 GLMMVGPSGSGKSTAWKVLLKAL 67 (1614)
Q Consensus 45 gVmlvG~~gsGKTt~~~~L~~al 67 (1614)
-+.|+||+||||||+++++++-+
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999998763
No 392
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=89.47 E-value=0.25 Score=57.04 Aligned_cols=26 Identities=31% Similarity=0.475 Sum_probs=24.2
Q ss_pred ccEEEEecCCCCChhhHHHHHHHHHH
Q psy568 43 NHGLMMVGPSGSGKSTAWKVLLKALE 68 (1614)
Q Consensus 43 r~gVmlvG~~gsGKTt~~~~L~~al~ 68 (1614)
..+|+|.||||+|||++.+.++..+.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999999999876
No 393
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=89.44 E-value=6.6 Score=35.72 Aligned_cols=64 Identities=16% Similarity=0.300 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q psy568 1240 PLRLELKSLEVQASENKAKGEETKDLITQLEKSIASYKDEYAQLIAQATAIKTDLDNVQAKFYE 1303 (1614)
Q Consensus 1240 P~~~~l~~~~~~~~~~~~~l~~~~~~l~~~e~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~ 1303 (1614)
|+...++.++.++..++.++......+..+...+..-+..-..+..++..++.+++.+.+.+-+
T Consensus 2 ~~~~~~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFe 65 (97)
T 2eqb_B 2 PLGSNYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFD 65 (97)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666666666666666666666666666666666666666666777777776665543
No 394
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=89.44 E-value=0.12 Score=58.54 Aligned_cols=23 Identities=43% Similarity=0.569 Sum_probs=20.7
Q ss_pred EEEEecCCCCChhhHHHHHHHHH
Q psy568 45 GLMMVGPSGSGKSTAWKVLLKAL 67 (1614)
Q Consensus 45 gVmlvG~~gsGKTt~~~~L~~al 67 (1614)
-+.|+||+||||||++++|++.+
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48899999999999999998874
No 395
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=89.43 E-value=0.12 Score=57.95 Aligned_cols=23 Identities=26% Similarity=0.647 Sum_probs=20.5
Q ss_pred EEEEecCCCCChhhHHHHHHHHH
Q psy568 45 GLMMVGPSGSGKSTAWKVLLKAL 67 (1614)
Q Consensus 45 gVmlvG~~gsGKTt~~~~L~~al 67 (1614)
-+.|+||+||||||++++|++.+
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998764
No 396
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=89.43 E-value=0.24 Score=51.60 Aligned_cols=28 Identities=25% Similarity=0.566 Sum_probs=24.1
Q ss_pred cEEEeecCCCChHHHHHHHHHHcCCeEEE
Q psy568 759 HLLLIGVSGAGKTTLSRFVAFMNGLSVFQ 787 (1614)
Q Consensus 759 h~LLvG~~GsGKtsl~rlaA~~~~~~~~~ 787 (1614)
.++|+|++||||||+++.+ ...|+.++.
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~ 30 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIV 30 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEE
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEE
Confidence 3789999999999999999 777887664
No 397
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=89.40 E-value=0.16 Score=54.19 Aligned_cols=23 Identities=26% Similarity=0.488 Sum_probs=20.4
Q ss_pred cEEEEecCCCCChhhHHHHHHHH
Q psy568 44 HGLMMVGPSGSGKSTAWKVLLKA 66 (1614)
Q Consensus 44 ~gVmlvG~~gsGKTt~~~~L~~a 66 (1614)
.-|.|+|++|+||||+++.+.+.
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 46899999999999999998764
No 398
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=89.40 E-value=0.22 Score=52.92 Aligned_cols=93 Identities=16% Similarity=0.170 Sum_probs=49.0
Q ss_pred CCCEEEecCCCCchHHHHHHHHhcC--CCCceEEEEcccCCCHHHHHhHhhcccceee-----cCCccccccccCCceEE
Q psy568 416 HKPLVLCGPPGSGKTMTLLSALRAL--PDMEVVSLNFSSATTPELLLKTFDHYCEYRK-----TPNGVILSPIQLGKWLV 488 (1614)
Q Consensus 416 ~~~vLL~Gp~GtGKT~lv~~~~~~l--~~~~~~~i~~s~~t~~~~l~~~~~~~~~~~~-----~~~g~~~~p~~~gk~~v 488 (1614)
|+=.+++||+|+|||+.+...+.+. .+..+..+.+.-.+... ...+.+...... .....++.-. .+..-+
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~r~~--~~~i~s~~g~~~~a~~~~~~~~i~~~~-~~~~dv 84 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYS--KEDVVSHMGEKEQAVAIKNSREILKYF-EEDTEV 84 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC---------CEEECTTSCEEECEEESSSTHHHHHC-CTTCSE
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCccch--HHHHHhhcCCceeeEeeCCHHHHHHHH-hccCCE
Confidence 4457899999999999888887765 45666666654332211 111111111000 0000011111 123347
Q ss_pred EEeccCCCCCccccCcccHHHHHHHHHHc
Q psy568 489 LFCDEINLPDMDKYATQRVISFLRQLIEQ 517 (1614)
Q Consensus 489 lfiDdin~p~~d~~g~q~~lelLrqlld~ 517 (1614)
++|||++.-. ...+++|+.+.+.
T Consensus 85 ViIDEaqfl~------~~~v~~l~~l~~~ 107 (191)
T 1xx6_A 85 IAIDEVQFFD------DEIVEIVNKIAES 107 (191)
T ss_dssp EEECSGGGSC------THHHHHHHHHHHT
T ss_pred EEEECCCCCC------HHHHHHHHHHHhC
Confidence 8889998832 3358889888775
No 399
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=89.38 E-value=0.24 Score=63.79 Aligned_cols=43 Identities=23% Similarity=0.423 Sum_probs=29.2
Q ss_pred HHHHHHhcCCCEEEecCCCCchHHHHHHHHhcC--CCCceEEEEc
Q psy568 408 LLYTWLAEHKPLVLCGPPGSGKTMTLLSALRAL--PDMEVVSLNF 450 (1614)
Q Consensus 408 ll~~~l~~~~~vLL~Gp~GtGKT~lv~~~~~~l--~~~~~~~i~~ 450 (1614)
.+..++..+-..|+.||||||||+++.+++..+ .+..+....+
T Consensus 197 AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~ 241 (646)
T 4b3f_X 197 AVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAP 241 (646)
T ss_dssp HHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred HHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcC
Confidence 345556566678999999999999887777654 2444444443
No 400
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=89.36 E-value=0.14 Score=55.49 Aligned_cols=24 Identities=38% Similarity=0.333 Sum_probs=21.1
Q ss_pred cEEEEecCCCCChhhHHHHHHHHH
Q psy568 44 HGLMMVGPSGSGKSTAWKVLLKAL 67 (1614)
Q Consensus 44 ~gVmlvG~~gsGKTt~~~~L~~al 67 (1614)
.-|.|+|++||||||+.+.|++.+
T Consensus 22 ~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 358899999999999999998865
No 401
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=89.32 E-value=0.14 Score=60.21 Aligned_cols=23 Identities=35% Similarity=0.547 Sum_probs=20.5
Q ss_pred EEEEecCCCCChhhHHHHHHHHH
Q psy568 45 GLMMVGPSGSGKSTAWKVLLKAL 67 (1614)
Q Consensus 45 gVmlvG~~gsGKTt~~~~L~~al 67 (1614)
-+.|+||+||||||+++++++-+
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHCCC
Confidence 47899999999999999998764
No 402
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=89.32 E-value=0.23 Score=58.87 Aligned_cols=26 Identities=31% Similarity=0.350 Sum_probs=22.9
Q ss_pred hccEEEEecCCCCChhhHHHHHHHHH
Q psy568 42 LNHGLMMVGPSGSGKSTAWKVLLKAL 67 (1614)
Q Consensus 42 ~r~gVmlvG~~gsGKTt~~~~L~~al 67 (1614)
.+.++.|+||+||||||+.+.|++.+
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 45589999999999999999999863
No 403
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=89.26 E-value=0.14 Score=60.24 Aligned_cols=23 Identities=39% Similarity=0.535 Sum_probs=20.5
Q ss_pred EEEEecCCCCChhhHHHHHHHHH
Q psy568 45 GLMMVGPSGSGKSTAWKVLLKAL 67 (1614)
Q Consensus 45 gVmlvG~~gsGKTt~~~~L~~al 67 (1614)
-+.|+||+||||||+++++++-+
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 47899999999999999998764
No 404
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=89.25 E-value=0.25 Score=52.64 Aligned_cols=29 Identities=21% Similarity=0.367 Sum_probs=25.4
Q ss_pred cEEEeecCCCChHHHHHHHHHHcCCeEEE
Q psy568 759 HLLLIGVSGAGKTTLSRFVAFMNGLSVFQ 787 (1614)
Q Consensus 759 h~LLvG~~GsGKtsl~rlaA~~~~~~~~~ 787 (1614)
.++|+|++||||||+++.+|...|..++.
T Consensus 11 ~I~l~G~~GsGKsT~~~~La~~l~~~~i~ 39 (196)
T 2c95_A 11 IIFVVGGPGSGKGTQCEKIVQKYGYTHLS 39 (196)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEc
Confidence 58899999999999999999888876553
No 405
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=89.22 E-value=3.9 Score=36.48 Aligned_cols=53 Identities=15% Similarity=0.253 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy568 1244 ELKSLEVQASENKAKGEETKDLITQLEKSIASYKDEYAQLIAQATAIKTDLDN 1296 (1614)
Q Consensus 1244 ~l~~~~~~~~~~~~~l~~~~~~l~~~e~~l~~l~~~~~~~~~~~~~l~~~l~~ 1296 (1614)
++..++.+...+..+++.++..+...+.+......++..+....+.++.+++.
T Consensus 7 Km~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~ 59 (81)
T 1ic2_A 7 KMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDK 59 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555555555555555555555555555555555555444443
No 406
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=89.19 E-value=0.2 Score=60.77 Aligned_cols=26 Identities=35% Similarity=0.537 Sum_probs=23.3
Q ss_pred EEEEecCCCCChhhHHHHHHHHHHHh
Q psy568 45 GLMMVGPSGSGKSTAWKVLLKALERY 70 (1614)
Q Consensus 45 gVmlvG~~gsGKTt~~~~L~~al~~~ 70 (1614)
-++||||+||||||+++.|++.+..-
T Consensus 295 VI~LVGpNGSGKTTLl~~LAgll~~~ 320 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTIGKLARQFEQQ 320 (503)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEECCCcccHHHHHHHHHHHhhhc
Confidence 58999999999999999999987643
No 407
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=89.18 E-value=0.094 Score=60.32 Aligned_cols=23 Identities=48% Similarity=0.817 Sum_probs=20.8
Q ss_pred EEEEecCCCCChhhHHHHHHHHH
Q psy568 45 GLMMVGPSGSGKSTAWKVLLKAL 67 (1614)
Q Consensus 45 gVmlvG~~gsGKTt~~~~L~~al 67 (1614)
-|.||||+||||||++++|.+-+
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTSS
T ss_pred EEEEECCCCchHHHHHHHHHcCC
Confidence 48899999999999999998765
No 408
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=89.18 E-value=0.18 Score=54.14 Aligned_cols=23 Identities=26% Similarity=0.488 Sum_probs=20.3
Q ss_pred cEEEEecCCCCChhhHHHHHHHH
Q psy568 44 HGLMMVGPSGSGKSTAWKVLLKA 66 (1614)
Q Consensus 44 ~gVmlvG~~gsGKTt~~~~L~~a 66 (1614)
.-|.|+||+|+||||+++.|.+.
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 45899999999999999998764
No 409
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=89.12 E-value=0.13 Score=57.38 Aligned_cols=23 Identities=39% Similarity=0.521 Sum_probs=20.4
Q ss_pred EEEEecCCCCChhhHHHHHHHHH
Q psy568 45 GLMMVGPSGSGKSTAWKVLLKAL 67 (1614)
Q Consensus 45 gVmlvG~~gsGKTt~~~~L~~al 67 (1614)
-+.|+||+||||||+++++++.+
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999998764
No 410
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=89.12 E-value=0.36 Score=53.38 Aligned_cols=48 Identities=21% Similarity=0.228 Sum_probs=34.0
Q ss_pred hcCCCEEEecCCCCchHHHHHHHHhc--CC------CCceEEEEcccCCCHHHHHh
Q psy568 414 AEHKPLVLCGPPGSGKTMTLLSALRA--LP------DMEVVSLNFSSATTPELLLK 461 (1614)
Q Consensus 414 ~~~~~vLL~Gp~GtGKT~lv~~~~~~--l~------~~~~~~i~~s~~t~~~~l~~ 461 (1614)
..|.-++|+||+|+|||+++..++.. ++ +...+.++......+..+..
T Consensus 22 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~ 77 (243)
T 1n0w_A 22 ETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLA 77 (243)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHH
T ss_pred cCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHH
Confidence 45678999999999999999999874 31 34566666655445554443
No 411
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=89.09 E-value=0.13 Score=58.45 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.4
Q ss_pred EEEEecCCCCChhhHHHHHHHHH
Q psy568 45 GLMMVGPSGSGKSTAWKVLLKAL 67 (1614)
Q Consensus 45 gVmlvG~~gsGKTt~~~~L~~al 67 (1614)
-+.|+||+||||||++++|++.+
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 37899999999999999998764
No 412
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=89.07 E-value=0.17 Score=56.52 Aligned_cols=25 Identities=20% Similarity=0.355 Sum_probs=21.3
Q ss_pred hccEEEEecCCCCChhhHHHHHHHH
Q psy568 42 LNHGLMMVGPSGSGKSTAWKVLLKA 66 (1614)
Q Consensus 42 ~r~gVmlvG~~gsGKTt~~~~L~~a 66 (1614)
...-+.|+||+||||||+.+.++..
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~~ 53 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 3445999999999999999999853
No 413
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=89.03 E-value=0.92 Score=57.68 Aligned_cols=29 Identities=31% Similarity=0.368 Sum_probs=25.5
Q ss_pred hccEEEEecCCCCChhhHHHHHHHHHHHh
Q psy568 42 LNHGLMMVGPSGSGKSTAWKVLLKALERY 70 (1614)
Q Consensus 42 ~r~gVmlvG~~gsGKTt~~~~L~~al~~~ 70 (1614)
.+.-+++.|||||||||++..+...+..+
T Consensus 163 ~~~~~vi~G~pGTGKTt~l~~ll~~l~~~ 191 (608)
T 1w36_D 163 TRRISVISGGPGTGKTTTVAKLLAALIQM 191 (608)
T ss_dssp TBSEEEEECCTTSTHHHHHHHHHHHHHHT
T ss_pred cCCCEEEEeCCCCCHHHHHHHHHHHHHHh
Confidence 46779999999999999999999888764
No 414
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=89.01 E-value=0.98 Score=48.49 Aligned_cols=95 Identities=18% Similarity=0.181 Sum_probs=46.8
Q ss_pred CCCEEEecCCCCchHHHHHHHHhcC--CCCceEEEEcccCCCH--HHHHhHhhcccceeec-CCccccccccCCceEEEE
Q psy568 416 HKPLVLCGPPGSGKTMTLLSALRAL--PDMEVVSLNFSSATTP--ELLLKTFDHYCEYRKT-PNGVILSPIQLGKWLVLF 490 (1614)
Q Consensus 416 ~~~vLL~Gp~GtGKT~lv~~~~~~l--~~~~~~~i~~s~~t~~--~~l~~~~~~~~~~~~~-~~g~~~~p~~~gk~~vlf 490 (1614)
|.=.+++||.|+|||+.+...+.+. .+..++.+.+.-.+.. ..+...+.-....... ....++.-. .++.-+++
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d~R~ge~~i~s~~g~~~~a~~~~~~~~~~~~~-~~~~dvVi 106 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCIDNRYSEEDVVSHNGLKVKAVPVSASKDIFKHI-TEEMDVIA 106 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC-----------------CCEEECSSGGGGGGGC-CSSCCEEE
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCCcchHHHHHhhcCCeeEEeecCCHHHHHHHH-hcCCCEEE
Confidence 4445689999999998887777544 3556666665433221 1222222111110000 001111111 12345788
Q ss_pred eccCCCCCccccCcccHHHHHHHHHHc
Q psy568 491 CDEINLPDMDKYATQRVISFLRQLIEQ 517 (1614)
Q Consensus 491 iDdin~p~~d~~g~q~~lelLrqlld~ 517 (1614)
|||++.-..+ .+++|+.+.+.
T Consensus 107 IDEaQF~~~~------~V~~l~~l~~~ 127 (214)
T 2j9r_A 107 IDEVQFFDGD------IVEVVQVLANR 127 (214)
T ss_dssp ECCGGGSCTT------HHHHHHHHHHT
T ss_pred EECcccCCHH------HHHHHHHHhhC
Confidence 8999984333 55889888764
No 415
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=89.01 E-value=1.2 Score=50.81 Aligned_cols=98 Identities=19% Similarity=0.210 Sum_probs=57.3
Q ss_pred HHHHHhc------cCCccEEEeecCCCChHHHHH-HHHHHc----CCeEEEEEecCCCChhcHHHHHHHHHHHhccCCCc
Q psy568 748 RIDRIFR------QPQGHLLLIGVSGAGKTTLSR-FVAFMN----GLSVFQIRAHNKYTGADFDEDLRTVLRRSGCKNEK 816 (1614)
Q Consensus 748 ri~Ril~------~p~gh~LLvG~~GsGKtsl~r-laA~~~----~~~~~~i~~~~~~~~~df~~~lk~~l~~ag~~~~~ 816 (1614)
.+.++|. .|+|-+++.|++|+|||+++- +++... |..+..+..-...+.. -..+-|++...
T Consensus 13 ~LD~~LGg~~~GGl~~GiteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~--------ra~~lGvd~d~ 84 (333)
T 3io5_A 13 MMNIALSGEITGGMQSGLLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA--------YLRSMGVDPER 84 (333)
T ss_dssp HHHHHHHSSTTCCBCSEEEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH--------HHHHTTCCGGG
T ss_pred HHHHHhCCCCCCCCcCCeEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH--------HHHHhCCCHHH
Confidence 3455665 688877899999999999854 554443 5677777654444321 14556776666
Q ss_pred EEEEEcCCcccccch-HHHHHHh--hccCC--------CCCCCChhhHHHH
Q psy568 817 IAFLLDESNVLESGF-LERMNTL--LANGE--------IPGLFEGDEYTTL 856 (1614)
Q Consensus 817 ~v~ll~d~~i~~~~~-le~in~l--L~~G~--------v~~Lf~~eE~~~i 856 (1614)
+.+.- .. ..+.. ++.++.+ +.++. |..||+.+|++.-
T Consensus 85 llv~~-~~--~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~~~~eieg~ 132 (333)
T 3io5_A 85 VIHTP-VQ--SLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLASKKETEDA 132 (333)
T ss_dssp EEEEE-CS--BHHHHHHHHHHHHHTCCTTCCEEEEEECSTTCBCC------
T ss_pred eEEEc-CC--CHHHHHHHHHHHHHHhhccCceEEEEecccccccchhccCc
Confidence 54443 22 12445 6666665 56654 6678877776543
No 416
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=88.98 E-value=0.16 Score=54.56 Aligned_cols=24 Identities=21% Similarity=0.342 Sum_probs=21.8
Q ss_pred cEEEEecCCCCChhhHHHHHHHHH
Q psy568 44 HGLMMVGPSGSGKSTAWKVLLKAL 67 (1614)
Q Consensus 44 ~gVmlvG~~gsGKTt~~~~L~~al 67 (1614)
.-|+|.|++||||||+.+.|++.+
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTS
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHH
Confidence 458999999999999999999876
No 417
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=88.96 E-value=0.2 Score=54.13 Aligned_cols=30 Identities=27% Similarity=0.383 Sum_probs=24.0
Q ss_pred HHhcCCCEEEecCCCCchHHHHHHHHhcCC
Q psy568 412 WLAEHKPLVLCGPPGSGKTMTLLSALRALP 441 (1614)
Q Consensus 412 ~l~~~~~vLL~Gp~GtGKT~lv~~~~~~l~ 441 (1614)
-+..|.-+.|+||+||||||+++.++..++
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 456788899999999999999988887663
No 418
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=88.92 E-value=0.26 Score=54.06 Aligned_cols=28 Identities=32% Similarity=0.341 Sum_probs=25.0
Q ss_pred cEEEeecCCCChHHHHHHHHHHcCCeEE
Q psy568 759 HLLLIGVSGAGKTTLSRFVAFMNGLSVF 786 (1614)
Q Consensus 759 h~LLvG~~GsGKtsl~rlaA~~~~~~~~ 786 (1614)
.+.|+|++||||||++++++...|+++.
T Consensus 7 ~i~i~G~~GsGKSTl~~~L~~~~g~~~~ 34 (227)
T 1cke_A 7 VITIDGPSGAGKGTLCKAMAEALQWHLL 34 (227)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCcc
Confidence 5889999999999999999998887655
No 419
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=88.91 E-value=0.25 Score=51.17 Aligned_cols=29 Identities=21% Similarity=0.445 Sum_probs=25.5
Q ss_pred cEEEeecCCCChHHHHHHHHHHcCCeEEE
Q psy568 759 HLLLIGVSGAGKTTLSRFVAFMNGLSVFQ 787 (1614)
Q Consensus 759 h~LLvG~~GsGKtsl~rlaA~~~~~~~~~ 787 (1614)
.++|.|++||||||+++.++...|+.++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~ 30 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYD 30 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 37899999999999999999988877664
No 420
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=88.88 E-value=0.16 Score=60.12 Aligned_cols=23 Identities=35% Similarity=0.618 Sum_probs=20.6
Q ss_pred EEEEecCCCCChhhHHHHHHHHH
Q psy568 45 GLMMVGPSGSGKSTAWKVLLKAL 67 (1614)
Q Consensus 45 gVmlvG~~gsGKTt~~~~L~~al 67 (1614)
-+.|+||+||||||+++++++-+
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 47899999999999999998764
No 421
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=88.86 E-value=0.26 Score=52.99 Aligned_cols=29 Identities=34% Similarity=0.440 Sum_probs=25.4
Q ss_pred cEEEeecCCCChHHHHHHHHHHcCCeEEE
Q psy568 759 HLLLIGVSGAGKTTLSRFVAFMNGLSVFQ 787 (1614)
Q Consensus 759 h~LLvG~~GsGKtsl~rlaA~~~~~~~~~ 787 (1614)
.++|+|++||||||+++.+|...|..++.
T Consensus 22 ~I~l~G~~GsGKST~a~~La~~l~~~~i~ 50 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQAVKLAEKLGIPQIS 50 (201)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEe
Confidence 48899999999999999999888877654
No 422
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=88.84 E-value=0.28 Score=54.66 Aligned_cols=31 Identities=32% Similarity=0.596 Sum_probs=27.6
Q ss_pred CccEEEeecCCCChHHHHHHHHHHcCCeEEE
Q psy568 757 QGHLLLIGVSGAGKTTLSRFVAFMNGLSVFQ 787 (1614)
Q Consensus 757 ~gh~LLvG~~GsGKtsl~rlaA~~~~~~~~~ 787 (1614)
+..+.|+|++||||||+++++|...|+.++.
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d 78 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFD 78 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEe
Confidence 4579999999999999999999999987664
No 423
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=88.82 E-value=0.16 Score=60.16 Aligned_cols=23 Identities=30% Similarity=0.613 Sum_probs=20.4
Q ss_pred EEEEecCCCCChhhHHHHHHHHH
Q psy568 45 GLMMVGPSGSGKSTAWKVLLKAL 67 (1614)
Q Consensus 45 gVmlvG~~gsGKTt~~~~L~~al 67 (1614)
-+.|+||+||||||+++++++-+
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 47899999999999999998763
No 424
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=88.82 E-value=32 Score=37.93 Aligned_cols=17 Identities=0% Similarity=-0.087 Sum_probs=6.4
Q ss_pred HhhhhhhhhHHHHHHHH
Q psy568 1333 KSLGIERERWEATSETF 1349 (1614)
Q Consensus 1333 ~~L~~e~~rW~~~~~~~ 1349 (1614)
..+.....+....+..+
T Consensus 261 ~~~~~~~~~~~~~~~~~ 277 (284)
T 1c1g_A 261 YAQKLKYKAISEELDHA 277 (284)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 425
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=88.81 E-value=0.15 Score=60.97 Aligned_cols=27 Identities=33% Similarity=0.641 Sum_probs=21.9
Q ss_pred HHhccE----EEEecCCCCChhhHHHHHHHH
Q psy568 40 SNLNHG----LMMVGPSGSGKSTAWKVLLKA 66 (1614)
Q Consensus 40 ~~~r~g----VmlvG~~gsGKTt~~~~L~~a 66 (1614)
+.++.| ++||||+||||||++++|.+.
T Consensus 35 l~i~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 35 KSVSQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp HSCC-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred eEecCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 455666 789999999999999998765
No 426
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=88.79 E-value=0.14 Score=57.29 Aligned_cols=23 Identities=39% Similarity=0.512 Sum_probs=20.6
Q ss_pred EEEEecCCCCChhhHHHHHHHHH
Q psy568 45 GLMMVGPSGSGKSTAWKVLLKAL 67 (1614)
Q Consensus 45 gVmlvG~~gsGKTt~~~~L~~al 67 (1614)
-+.|+||+||||||+++++++.+
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998864
No 427
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=88.77 E-value=0.17 Score=53.50 Aligned_cols=26 Identities=23% Similarity=0.282 Sum_probs=23.0
Q ss_pred cCCCEEEecCCCCchHHHHHHHHhcC
Q psy568 415 EHKPLVLCGPPGSGKTMTLLSALRAL 440 (1614)
Q Consensus 415 ~~~~vLL~Gp~GtGKT~lv~~~~~~l 440 (1614)
.++.|+|+||||+|||+++..+++..
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 47789999999999999999888765
No 428
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=88.77 E-value=22 Score=35.96 Aligned_cols=101 Identities=15% Similarity=0.100 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH----HHHHHhHHHHHHHHHHHHHHHHh
Q psy568 1259 GEETKDLITQLEKSIASYKDEYAQLIAQATAIKTDLDNVQAKFYEYAQLIAQA----TAIKTDLDNVQAKVERSMALLKS 1334 (1614)
Q Consensus 1259 l~~~~~~l~~~e~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~rl~~a~~l~~~ 1334 (1614)
..++...++.++..+..|++.+..+...+..|+.++..+|+.+..-...-.+. ..++..+......+++...-...
T Consensus 36 ~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k 115 (168)
T 3o0z_A 36 HTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEK 115 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666777777777778888887788888888877777663221111111 12344555556666666666666
Q ss_pred hhhhhhhHHHHHHHHHHhhhhchhH
Q psy568 1335 LGIERERWEATSETFRSQMATIIGD 1359 (1614)
Q Consensus 1335 L~~e~~rW~~~~~~~~~~~~~l~gd 1359 (1614)
...++..-.+.+..+++....+.-|
T Consensus 116 ~~~e~r~L~Ekl~~lEKe~a~~eid 140 (168)
T 3o0z_A 116 VEGERKEAQDMLNHSEKEKNNLEID 140 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 6677777777777777776665544
No 429
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=88.77 E-value=0.29 Score=58.60 Aligned_cols=39 Identities=18% Similarity=0.093 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHHhccEEE-EecCCCCChhhHHHHHHH
Q psy568 27 GPWMEKVLQLYQISNLNHGLM-MVGPSGSGKSTAWKVLLK 65 (1614)
Q Consensus 27 ~~~~~K~~qL~e~~~~r~gVm-lvG~~gsGKTt~~~~L~~ 65 (1614)
+....++.+..+....+.|++ |+||+|+||||++++|.+
T Consensus 52 ~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 52 QLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp HHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHT
T ss_pred cccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhC
No 430
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=88.74 E-value=0.17 Score=61.86 Aligned_cols=28 Identities=21% Similarity=0.389 Sum_probs=24.5
Q ss_pred EEEEecCCCCChhhHHHHHHHHHHHhhc
Q psy568 45 GLMMVGPSGSGKSTAWKVLLKALERYEG 72 (1614)
Q Consensus 45 gVmlvG~~gsGKTt~~~~L~~al~~~~~ 72 (1614)
-|+|+||+||||||+.|+|++-+....|
T Consensus 140 ~v~IvGpnGsGKSTLlr~L~Gl~~p~~G 167 (460)
T 2npi_A 140 RVVIVGGSQTGKTSLSRTLCSYALKFNA 167 (460)
T ss_dssp CEEEEESTTSSHHHHHHHHHHTTHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCcccccCC
Confidence 4999999999999999999998766544
No 431
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=88.74 E-value=0.55 Score=52.36 Aligned_cols=24 Identities=17% Similarity=0.450 Sum_probs=21.5
Q ss_pred ccEEEEecCCCCChhhHHHHHHHH
Q psy568 43 NHGLMMVGPSGSGKSTAWKVLLKA 66 (1614)
Q Consensus 43 r~gVmlvG~~gsGKTt~~~~L~~a 66 (1614)
+.||++.||||+|||.+.++|+..
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHhh
Confidence 458999999999999999988775
No 432
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=88.73 E-value=0.27 Score=53.44 Aligned_cols=29 Identities=31% Similarity=0.507 Sum_probs=25.3
Q ss_pred cEEEeecCCCChHHHHHHHHHHcCCeEEE
Q psy568 759 HLLLIGVSGAGKTTLSRFVAFMNGLSVFQ 787 (1614)
Q Consensus 759 h~LLvG~~GsGKtsl~rlaA~~~~~~~~~ 787 (1614)
+++|.|++||||||+++.+|...|..++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~ 30 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIS 30 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEe
Confidence 37899999999999999998888877664
No 433
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=88.71 E-value=0.39 Score=51.54 Aligned_cols=27 Identities=33% Similarity=0.412 Sum_probs=22.9
Q ss_pred cCCccEEEeecCCCChHHHHHHHHHHc
Q psy568 755 QPQGHLLLIGVSGAGKTTLSRFVAFMN 781 (1614)
Q Consensus 755 ~p~gh~LLvG~~GsGKtsl~rlaA~~~ 781 (1614)
.++..+.|+|++||||||+++.+|...
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 445567899999999999999998765
No 434
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=88.71 E-value=0.16 Score=59.20 Aligned_cols=30 Identities=23% Similarity=0.419 Sum_probs=25.2
Q ss_pred HHHhccEEEEecCCCCChhhHHHHHHHHHH
Q psy568 39 ISNLNHGLMMVGPSGSGKSTAWKVLLKALE 68 (1614)
Q Consensus 39 ~~~~r~gVmlvG~~gsGKTt~~~~L~~al~ 68 (1614)
.+..+..+.|+||+||||||++++|.+.+.
T Consensus 167 ~i~~g~~v~i~G~~GsGKTTll~~l~g~~~ 196 (330)
T 2pt7_A 167 GIAIGKNVIVCGGTGSGKTTYIKSIMEFIP 196 (330)
T ss_dssp HHHHTCCEEEEESTTSCHHHHHHHGGGGSC
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 445566799999999999999999988754
No 435
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=88.67 E-value=0.28 Score=53.11 Aligned_cols=27 Identities=33% Similarity=0.361 Sum_probs=22.3
Q ss_pred cCCccEEEeecCCCChHHHHHHHHHHc
Q psy568 755 QPQGHLLLIGVSGAGKTTLSRFVAFMN 781 (1614)
Q Consensus 755 ~p~gh~LLvG~~GsGKtsl~rlaA~~~ 781 (1614)
.++..+.++|++||||||++++++-..
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 344567799999999999999988764
No 436
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=88.66 E-value=0.21 Score=57.71 Aligned_cols=25 Identities=36% Similarity=0.401 Sum_probs=22.5
Q ss_pred EEEEecCCCCChhhHHHHHHHHHHH
Q psy568 45 GLMMVGPSGSGKSTAWKVLLKALER 69 (1614)
Q Consensus 45 gVmlvG~~gsGKTt~~~~L~~al~~ 69 (1614)
-|.|.||+||||||+.+.|.+.+..
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll~~ 118 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALLSR 118 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcc
Confidence 5899999999999999999988754
No 437
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=88.63 E-value=0.33 Score=50.99 Aligned_cols=33 Identities=33% Similarity=0.483 Sum_probs=27.0
Q ss_pred CccEEEeecCCCChHHHHHHHHHHc---CCeEEEEE
Q psy568 757 QGHLLLIGVSGAGKTTLSRFVAFMN---GLSVFQIR 789 (1614)
Q Consensus 757 ~gh~LLvG~~GsGKtsl~rlaA~~~---~~~~~~i~ 789 (1614)
+..+.|+|++||||||+++.++... |++++.+.
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d 40 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLD 40 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEEC
Confidence 4457899999999999999998876 87776553
No 438
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=88.62 E-value=0.15 Score=57.65 Aligned_cols=23 Identities=35% Similarity=0.592 Sum_probs=20.4
Q ss_pred EEEEecCCCCChhhHHHHHHHHH
Q psy568 45 GLMMVGPSGSGKSTAWKVLLKAL 67 (1614)
Q Consensus 45 gVmlvG~~gsGKTt~~~~L~~al 67 (1614)
-+.|+||+||||||+++++++.+
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999998764
No 439
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=88.62 E-value=0.27 Score=62.54 Aligned_cols=26 Identities=42% Similarity=0.629 Sum_probs=22.0
Q ss_pred cCCCEEEecCCCCchHHHHHHHHhcC
Q psy568 415 EHKPLVLCGPPGSGKTMTLLSALRAL 440 (1614)
Q Consensus 415 ~~~~vLL~Gp~GtGKT~lv~~~~~~l 440 (1614)
.+..+++.||||||||+++..++..+
T Consensus 163 ~~~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 163 TRRISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp TBSEEEEECCTTSTHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCCHHHHHHHHHHHH
Confidence 57889999999999999887776543
No 440
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=88.62 E-value=0.19 Score=53.13 Aligned_cols=24 Identities=33% Similarity=0.455 Sum_probs=21.0
Q ss_pred cEEEEecCCCCChhhHHHHHHHHH
Q psy568 44 HGLMMVGPSGSGKSTAWKVLLKAL 67 (1614)
Q Consensus 44 ~gVmlvG~~gsGKTt~~~~L~~al 67 (1614)
.+|+|+||||+|||++...|++..
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC
Confidence 579999999999999988887764
No 441
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=88.61 E-value=0.2 Score=57.97 Aligned_cols=25 Identities=32% Similarity=0.340 Sum_probs=22.3
Q ss_pred cEEEEecCCCCChhhHHHHHHHHHH
Q psy568 44 HGLMMVGPSGSGKSTAWKVLLKALE 68 (1614)
Q Consensus 44 ~gVmlvG~~gsGKTt~~~~L~~al~ 68 (1614)
.-|.|+||+||||||+.+.|++.+.
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3588999999999999999999875
No 442
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=88.61 E-value=0.16 Score=60.46 Aligned_cols=23 Identities=39% Similarity=0.612 Sum_probs=20.7
Q ss_pred EEEEecCCCCChhhHHHHHHHHH
Q psy568 45 GLMMVGPSGSGKSTAWKVLLKAL 67 (1614)
Q Consensus 45 gVmlvG~~gsGKTt~~~~L~~al 67 (1614)
-+.|+||+||||||+++++++-+
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTCS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 48999999999999999998764
No 443
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=88.57 E-value=0.18 Score=58.13 Aligned_cols=24 Identities=29% Similarity=0.562 Sum_probs=21.9
Q ss_pred cEEEEecCCCCChhhHHHHHHHHH
Q psy568 44 HGLMMVGPSGSGKSTAWKVLLKAL 67 (1614)
Q Consensus 44 ~gVmlvG~~gsGKTt~~~~L~~al 67 (1614)
..|+|+|||||||||+.+.|++.+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999999875
No 444
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=88.53 E-value=1.2 Score=50.81 Aligned_cols=24 Identities=21% Similarity=0.177 Sum_probs=20.4
Q ss_pred cEEEeecCCCChHHHHHHHHHHcC
Q psy568 759 HLLLIGVSGAGKTTLSRFVAFMNG 782 (1614)
Q Consensus 759 h~LLvG~~GsGKtsl~rlaA~~~~ 782 (1614)
-+.++|++||||||++++++...+
T Consensus 33 ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 33 FIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 366999999999999998887654
No 445
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=88.49 E-value=0.3 Score=51.96 Aligned_cols=28 Identities=25% Similarity=0.354 Sum_probs=24.4
Q ss_pred cEEEeecCCCChHHHHHHHHHHcCCeEE
Q psy568 759 HLLLIGVSGAGKTTLSRFVAFMNGLSVF 786 (1614)
Q Consensus 759 h~LLvG~~GsGKtsl~rlaA~~~~~~~~ 786 (1614)
.++|.|++||||||+++.+|...|..++
T Consensus 5 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i 32 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQCARIVEKYGYTHL 32 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 4789999999999999999888887654
No 446
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=88.47 E-value=0.24 Score=52.02 Aligned_cols=27 Identities=33% Similarity=0.438 Sum_probs=22.0
Q ss_pred cEEEeecCCCChHHHHHHHHH-HcCCeE
Q psy568 759 HLLLIGVSGAGKTTLSRFVAF-MNGLSV 785 (1614)
Q Consensus 759 h~LLvG~~GsGKtsl~rlaA~-~~~~~~ 785 (1614)
.++++|++||||||+++.++. ..|..+
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~~~~~~~~ 31 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIAKNPGFYN 31 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSTTEEE
T ss_pred EEEEecCCCCCHHHHHHHHHhhcCCcEE
Confidence 378999999999999999887 455443
No 447
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=88.45 E-value=0.2 Score=54.58 Aligned_cols=23 Identities=30% Similarity=0.330 Sum_probs=20.5
Q ss_pred ccEEEEecCCCCChhhHHHHHHH
Q psy568 43 NHGLMMVGPSGSGKSTAWKVLLK 65 (1614)
Q Consensus 43 r~gVmlvG~~gsGKTt~~~~L~~ 65 (1614)
+.-|.|+|++||||||+.+.|++
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999999976
No 448
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=88.42 E-value=0.13 Score=60.22 Aligned_cols=23 Identities=22% Similarity=0.488 Sum_probs=20.4
Q ss_pred EEEEecCCCCChhhHHHHHHHHH
Q psy568 45 GLMMVGPSGSGKSTAWKVLLKAL 67 (1614)
Q Consensus 45 gVmlvG~~gsGKTt~~~~L~~al 67 (1614)
-+.|+||+||||||+++++++-+
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 47899999999999999998764
No 449
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=88.38 E-value=0.31 Score=52.06 Aligned_cols=29 Identities=24% Similarity=0.382 Sum_probs=25.2
Q ss_pred cEEEeecCCCChHHHHHHHHHHcCCeEEE
Q psy568 759 HLLLIGVSGAGKTTLSRFVAFMNGLSVFQ 787 (1614)
Q Consensus 759 h~LLvG~~GsGKtsl~rlaA~~~~~~~~~ 787 (1614)
.++|.|++||||||+++.+|...|..++.
T Consensus 14 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~ 42 (199)
T 2bwj_A 14 IIFIIGGPGSGKGTQCEKLVEKYGFTHLS 42 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEc
Confidence 48899999999999999999888866553
No 450
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=88.38 E-value=0.22 Score=51.23 Aligned_cols=28 Identities=25% Similarity=0.290 Sum_probs=24.6
Q ss_pred HhcCCCEEEecCCCCchHHHHHHHHhcC
Q psy568 413 LAEHKPLVLCGPPGSGKTMTLLSALRAL 440 (1614)
Q Consensus 413 l~~~~~vLL~Gp~GtGKT~lv~~~~~~l 440 (1614)
+..|.-+.|.||.|+||||+++.++..+
T Consensus 30 i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 30 TEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3567779999999999999999998876
No 451
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=88.36 E-value=0.32 Score=51.64 Aligned_cols=29 Identities=21% Similarity=0.264 Sum_probs=24.9
Q ss_pred cEEEeecCCCChHHHHHHHHHHcCCeEEE
Q psy568 759 HLLLIGVSGAGKTTLSRFVAFMNGLSVFQ 787 (1614)
Q Consensus 759 h~LLvG~~GsGKtsl~rlaA~~~~~~~~~ 787 (1614)
.++|+|++||||||+++.+|...|..++.
T Consensus 8 ~I~l~G~~GsGKsT~~~~L~~~l~~~~i~ 36 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCANIVRDFGWVHLS 36 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEee
Confidence 47899999999999999999888876553
No 452
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=88.35 E-value=0.23 Score=52.32 Aligned_cols=28 Identities=21% Similarity=0.093 Sum_probs=21.3
Q ss_pred cEEEeecCCCChHHHHHHHHHHcCCeEE
Q psy568 759 HLLLIGVSGAGKTTLSRFVAFMNGLSVF 786 (1614)
Q Consensus 759 h~LLvG~~GsGKtsl~rlaA~~~~~~~~ 786 (1614)
.++|.|++||||||+++.+|...|..++
T Consensus 7 ~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 7 IIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp EEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 4789999999999999999998888766
No 453
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=88.35 E-value=0.2 Score=53.77 Aligned_cols=20 Identities=40% Similarity=0.481 Sum_probs=0.0
Q ss_pred EEEecCCCCChhhHHHHHHH
Q psy568 46 LMMVGPSGSGKSTAWKVLLK 65 (1614)
Q Consensus 46 VmlvG~~gsGKTt~~~~L~~ 65 (1614)
|.|+|++||||||+.+.|++
T Consensus 11 I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 11 IGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp EEEEECTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
No 454
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=88.31 E-value=0.33 Score=53.30 Aligned_cols=29 Identities=24% Similarity=0.389 Sum_probs=25.5
Q ss_pred cEEEeecCCCChHHHHHHHHHHcCCeEEE
Q psy568 759 HLLLIGVSGAGKTTLSRFVAFMNGLSVFQ 787 (1614)
Q Consensus 759 h~LLvG~~GsGKtsl~rlaA~~~~~~~~~ 787 (1614)
.++|+|++||||||+++.+|...|..++.
T Consensus 9 ~I~l~G~~GsGKsT~a~~La~~l~~~~i~ 37 (227)
T 1zd8_A 9 RAVIMGAPGSGKGTVSSRITTHFELKHLS 37 (227)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHSSSEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEe
Confidence 48999999999999999999888876653
No 455
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=88.23 E-value=0.32 Score=52.45 Aligned_cols=28 Identities=32% Similarity=0.495 Sum_probs=24.9
Q ss_pred EEEeecCCCChHHHHHHHHHHcCCeEEE
Q psy568 760 LLLIGVSGAGKTTLSRFVAFMNGLSVFQ 787 (1614)
Q Consensus 760 ~LLvG~~GsGKtsl~rlaA~~~~~~~~~ 787 (1614)
++|.|||||||+|.++.+|.-.|...++
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~g~~~is 30 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEKGFVHIS 30 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEc
Confidence 7899999999999999999998877654
No 456
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=88.22 E-value=0.16 Score=57.08 Aligned_cols=23 Identities=35% Similarity=0.703 Sum_probs=20.6
Q ss_pred EEEEecCCCCChhhHHHHHHHHH
Q psy568 45 GLMMVGPSGSGKSTAWKVLLKAL 67 (1614)
Q Consensus 45 gVmlvG~~gsGKTt~~~~L~~al 67 (1614)
-+.|+||+||||||+++++++.+
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998764
No 457
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=88.21 E-value=0.27 Score=52.40 Aligned_cols=25 Identities=28% Similarity=0.401 Sum_probs=0.0
Q ss_pred ccEEEEecCCCCChhhHHHHHHHHH
Q psy568 43 NHGLMMVGPSGSGKSTAWKVLLKAL 67 (1614)
Q Consensus 43 r~gVmlvG~~gsGKTt~~~~L~~al 67 (1614)
+.-|.|+|++||||||+.+.|++.+
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
No 458
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=88.19 E-value=0.3 Score=53.14 Aligned_cols=29 Identities=24% Similarity=0.413 Sum_probs=25.0
Q ss_pred cEEEeecCCCChHHHHHHHHHHcCCeEEE
Q psy568 759 HLLLIGVSGAGKTTLSRFVAFMNGLSVFQ 787 (1614)
Q Consensus 759 h~LLvG~~GsGKtsl~rlaA~~~~~~~~~ 787 (1614)
.++|.|++||||||+++.+|...|..++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~ 30 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIS 30 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEee
Confidence 37899999999999999998887877664
No 459
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=88.18 E-value=0.14 Score=53.50 Aligned_cols=23 Identities=35% Similarity=0.440 Sum_probs=19.3
Q ss_pred cCCCEEEecCCCCchHHHHHHHH
Q psy568 415 EHKPLVLCGPPGSGKTMTLLSAL 437 (1614)
Q Consensus 415 ~~~~vLL~Gp~GtGKT~lv~~~~ 437 (1614)
.|.-+.|+||+||||||+++.++
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHS
T ss_pred CCEEEEEECCCCCCHHHHHHHHc
Confidence 45668999999999999998743
No 460
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=88.11 E-value=0.26 Score=56.64 Aligned_cols=27 Identities=33% Similarity=0.445 Sum_probs=23.9
Q ss_pred cEEEEecCCCCChhhHHHHHHHHHHHh
Q psy568 44 HGLMMVGPSGSGKSTAWKVLLKALERY 70 (1614)
Q Consensus 44 ~gVmlvG~~gsGKTt~~~~L~~al~~~ 70 (1614)
.-++++||+||||||+...|+..+...
T Consensus 105 ~vi~ivG~~GsGKTTl~~~LA~~l~~~ 131 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGKLAKMFVDE 131 (306)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCChHHHHHHHHHHHHHhc
Confidence 358999999999999999999998653
No 461
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=88.08 E-value=0.66 Score=55.81 Aligned_cols=32 Identities=34% Similarity=0.447 Sum_probs=26.3
Q ss_pred ccEEEEecCCCCChhhHHHHHHHHHHHhhcCCc
Q psy568 43 NHGLMMVGPSGSGKSTAWKVLLKALERYEGVEG 75 (1614)
Q Consensus 43 r~gVmlvG~~gsGKTt~~~~L~~al~~~~~~~~ 75 (1614)
..-|+++|++|+||||+...|+..+.+. |..+
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~-G~kV 131 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKR-GYKV 131 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTT-TCCE
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHC-CCeE
Confidence 3578999999999999999999998753 4443
No 462
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=88.04 E-value=0.39 Score=54.94 Aligned_cols=32 Identities=19% Similarity=0.139 Sum_probs=24.6
Q ss_pred cEEEeecCCCChHHHHHHHHHHcCCeEEEEEe
Q psy568 759 HLLLIGVSGAGKTTLSRFVAFMNGLSVFQIRA 790 (1614)
Q Consensus 759 h~LLvG~~GsGKtsl~rlaA~~~~~~~~~i~~ 790 (1614)
.+++.|++|+|||+++..+|...|..+..+.+
T Consensus 125 viLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~ 156 (331)
T 2vhj_A 125 MVIVTGKGNSGKTPLVHALGEALGGKDKYATV 156 (331)
T ss_dssp EEEEECSCSSSHHHHHHHHHHHHHTTSCCEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEe
Confidence 46899999999999999888766655444444
No 463
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=88.00 E-value=0.35 Score=59.38 Aligned_cols=42 Identities=24% Similarity=0.366 Sum_probs=31.3
Q ss_pred cEEEEecCCCCChhhHHHHHHHHHHH-hhcCCceEEEeCCCCC
Q psy568 44 HGLMMVGPSGSGKSTAWKVLLKALER-YEGVEGVAHIIDPKAI 85 (1614)
Q Consensus 44 ~gVmlvG~~gsGKTt~~~~L~~al~~-~~~~~~~~~~inPkai 85 (1614)
..++|.|+||||||++++++...+-. ........+.++||..
T Consensus 168 pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~ 210 (512)
T 2ius_A 168 PHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKML 210 (512)
T ss_dssp CSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchh
Confidence 35899999999999999999876532 2122346778999964
No 464
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=87.96 E-value=0.32 Score=51.33 Aligned_cols=35 Identities=20% Similarity=0.442 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHhccEEEEecCCCCChhhHHHHHHH
Q psy568 29 WMEKVLQLYQISNLNHGLMMVGPSGSGKSTAWKVLLK 65 (1614)
Q Consensus 29 ~~~K~~qL~e~~~~r~gVmlvG~~gsGKTt~~~~L~~ 65 (1614)
++.|+.+++. ..+.-|+++|++|+||||+++.|..
T Consensus 4 ~~~~~~~~~~--~~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 4 LFTRIWRLFN--HQEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp HHHHHHHHHT--TSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred HHHHHHHhcC--CCccEEEEECCCCCCHHHHHHHHhc
Confidence 4566666433 4456799999999999999998874
No 465
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=87.89 E-value=0.28 Score=49.92 Aligned_cols=23 Identities=35% Similarity=0.563 Sum_probs=20.5
Q ss_pred EEEEecCCCCChhhHHHHHHHHH
Q psy568 45 GLMMVGPSGSGKSTAWKVLLKAL 67 (1614)
Q Consensus 45 gVmlvG~~gsGKTt~~~~L~~al 67 (1614)
-.+|+||.||||||++.++.-++
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999998876
No 466
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=87.86 E-value=0.32 Score=52.22 Aligned_cols=28 Identities=32% Similarity=0.576 Sum_probs=24.5
Q ss_pred cEEEeecCCCChHHHHHHHHHHcCCeEE
Q psy568 759 HLLLIGVSGAGKTTLSRFVAFMNGLSVF 786 (1614)
Q Consensus 759 h~LLvG~~GsGKtsl~rlaA~~~~~~~~ 786 (1614)
.+.|+|++||||||+++.+|...+..++
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~ 29 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIF 29 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEE
Confidence 3789999999999999999998887654
No 467
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=87.84 E-value=0.68 Score=53.62 Aligned_cols=29 Identities=28% Similarity=0.313 Sum_probs=24.3
Q ss_pred cEEEeecCCCChHHHHHHHHHHcCCeEEE
Q psy568 759 HLLLIGVSGAGKTTLSRFVAFMNGLSVFQ 787 (1614)
Q Consensus 759 h~LLvG~~GsGKtsl~rlaA~~~~~~~~~ 787 (1614)
-+.++||+||||||+++.+|...+..++.
T Consensus 9 lI~I~GptgSGKTtla~~La~~l~~~iis 37 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKFNGEIIS 37 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTEEEEE
T ss_pred eEEEECCCcCcHHHHHHHHHHHcCCceec
Confidence 37899999999999999999887755444
No 468
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=87.81 E-value=0.35 Score=52.66 Aligned_cols=29 Identities=38% Similarity=0.642 Sum_probs=25.7
Q ss_pred cEEEeecCCCChHHHHHHHHHHcCCeEEE
Q psy568 759 HLLLIGVSGAGKTTLSRFVAFMNGLSVFQ 787 (1614)
Q Consensus 759 h~LLvG~~GsGKtsl~rlaA~~~~~~~~~ 787 (1614)
.++|.|++||||||+++.+|...|+.++.
T Consensus 7 ~I~l~G~~GsGKsT~a~~La~~l~~~~i~ 35 (217)
T 3be4_A 7 NLILIGAPGSGKGTQCEFIKKEYGLAHLS 35 (217)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCceEEe
Confidence 48899999999999999999888877664
No 469
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=87.79 E-value=0.39 Score=53.68 Aligned_cols=32 Identities=28% Similarity=0.250 Sum_probs=27.1
Q ss_pred cCCccEEEeecCCCChHHHHHHHHHHcCCeEE
Q psy568 755 QPQGHLLLIGVSGAGKTTLSRFVAFMNGLSVF 786 (1614)
Q Consensus 755 ~p~gh~LLvG~~GsGKtsl~rlaA~~~~~~~~ 786 (1614)
.++..+.|+|++||||||+++++|..+|+...
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~ 56 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLL 56 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcC
Confidence 34456789999999999999999999998655
No 470
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=87.74 E-value=0.21 Score=58.68 Aligned_cols=23 Identities=30% Similarity=0.297 Sum_probs=20.1
Q ss_pred EEEEecCCCCChhhHHHHHHHHH
Q psy568 45 GLMMVGPSGSGKSTAWKVLLKAL 67 (1614)
Q Consensus 45 gVmlvG~~gsGKTt~~~~L~~al 67 (1614)
-+.|+||+||||||+++++.+-+
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHhcCC
Confidence 37899999999999999988753
No 471
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=87.72 E-value=0.3 Score=51.71 Aligned_cols=24 Identities=29% Similarity=0.333 Sum_probs=21.5
Q ss_pred cEEEeecCCCChHHHHHHHHHHcC
Q psy568 759 HLLLIGVSGAGKTTLSRFVAFMNG 782 (1614)
Q Consensus 759 h~LLvG~~GsGKtsl~rlaA~~~~ 782 (1614)
.+++.|++||||||+++.+|...+
T Consensus 5 ~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999988665
No 472
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=87.68 E-value=0.34 Score=52.61 Aligned_cols=29 Identities=28% Similarity=0.502 Sum_probs=25.0
Q ss_pred cEEEeecCCCChHHHHHHHHHHcCCeEEE
Q psy568 759 HLLLIGVSGAGKTTLSRFVAFMNGLSVFQ 787 (1614)
Q Consensus 759 h~LLvG~~GsGKtsl~rlaA~~~~~~~~~ 787 (1614)
.++|.|++||||||+++.+|...|+.++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~ 30 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIS 30 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 37899999999999999999877876654
No 473
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=87.66 E-value=0.17 Score=57.67 Aligned_cols=24 Identities=29% Similarity=0.556 Sum_probs=21.2
Q ss_pred EEEEecCCCCChhhHHHHHHHHHH
Q psy568 45 GLMMVGPSGSGKSTAWKVLLKALE 68 (1614)
Q Consensus 45 gVmlvG~~gsGKTt~~~~L~~al~ 68 (1614)
-+.|+||+||||||++++|++.+.
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl~~ 89 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGELE 89 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Confidence 378999999999999999988753
No 474
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=87.64 E-value=0.26 Score=50.71 Aligned_cols=23 Identities=26% Similarity=0.343 Sum_probs=20.2
Q ss_pred ccEEEEecCCCCChhhHHHHHHH
Q psy568 43 NHGLMMVGPSGSGKSTAWKVLLK 65 (1614)
Q Consensus 43 r~gVmlvG~~gsGKTt~~~~L~~ 65 (1614)
..-|+++|++|+||||+++.|..
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~ 27 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCK 27 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHHc
Confidence 45689999999999999998875
No 475
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=87.61 E-value=0.2 Score=59.60 Aligned_cols=25 Identities=24% Similarity=0.324 Sum_probs=22.3
Q ss_pred ccEEEEecCCCCChhhHHHHHHHHH
Q psy568 43 NHGLMMVGPSGSGKSTAWKVLLKAL 67 (1614)
Q Consensus 43 r~gVmlvG~~gsGKTt~~~~L~~al 67 (1614)
..-+.|+||+||||||+.+.|++.+
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4468999999999999999999875
No 476
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=87.60 E-value=0.28 Score=55.10 Aligned_cols=26 Identities=27% Similarity=0.386 Sum_probs=23.2
Q ss_pred cCCccEEEeecCCCChHHHHHHHHHH
Q psy568 755 QPQGHLLLIGVSGAGKTTLSRFVAFM 780 (1614)
Q Consensus 755 ~p~gh~LLvG~~GsGKtsl~rlaA~~ 780 (1614)
.|++.++++||+||||||+.++++-.
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHh
Confidence 57888999999999999999988865
No 477
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=87.60 E-value=0.25 Score=51.06 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=19.5
Q ss_pred cEEEEecCCCCChhhHHHHHHH
Q psy568 44 HGLMMVGPSGSGKSTAWKVLLK 65 (1614)
Q Consensus 44 ~gVmlvG~~gsGKTt~~~~L~~ 65 (1614)
.-|.|+|++|+||||+++.|.+
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 4589999999999999999865
No 478
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=87.53 E-value=0.48 Score=55.21 Aligned_cols=50 Identities=18% Similarity=0.093 Sum_probs=37.2
Q ss_pred hcCCCEEEecCCCCchHHHHHHHHhcC--C------CCceEEEEcccCCCHHHHHhHh
Q psy568 414 AEHKPLVLCGPPGSGKTMTLLSALRAL--P------DMEVVSLNFSSATTPELLLKTF 463 (1614)
Q Consensus 414 ~~~~~vLL~Gp~GtGKT~lv~~~~~~l--~------~~~~~~i~~s~~t~~~~l~~~~ 463 (1614)
..|.-++++||||+|||+++.+++... + +..++.+++....++..+....
T Consensus 105 ~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~ 162 (324)
T 2z43_A 105 ETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMA 162 (324)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHH
Confidence 456779999999999999999998754 2 4456777766555677666554
No 479
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=87.51 E-value=0.14 Score=60.25 Aligned_cols=23 Identities=30% Similarity=0.544 Sum_probs=20.4
Q ss_pred EEEEecCCCCChhhHHHHHHHHH
Q psy568 45 GLMMVGPSGSGKSTAWKVLLKAL 67 (1614)
Q Consensus 45 gVmlvG~~gsGKTt~~~~L~~al 67 (1614)
-+.|+||+||||||+++++++-+
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999998763
No 480
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=87.47 E-value=0.27 Score=50.22 Aligned_cols=22 Identities=36% Similarity=0.595 Sum_probs=19.5
Q ss_pred EEEEecCCCCChhhHHHHHHHH
Q psy568 45 GLMMVGPSGSGKSTAWKVLLKA 66 (1614)
Q Consensus 45 gVmlvG~~gsGKTt~~~~L~~a 66 (1614)
-|+++|++|+||||+++.|.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999998753
No 481
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=87.45 E-value=1.8 Score=52.20 Aligned_cols=29 Identities=24% Similarity=0.355 Sum_probs=24.3
Q ss_pred cEEEeecCCCChHHHHHHHHHHcCCeEEE
Q psy568 759 HLLLIGVSGAGKTTLSRFVAFMNGLSVFQ 787 (1614)
Q Consensus 759 h~LLvG~~GsGKtsl~rlaA~~~~~~~~~ 787 (1614)
-++|+|++||||||+++.++...|+.++.
T Consensus 260 lIil~G~pGSGKSTla~~L~~~~~~~~i~ 288 (416)
T 3zvl_A 260 VVVAVGFPGAGKSTFIQEHLVSAGYVHVN 288 (416)
T ss_dssp EEEEESCTTSSHHHHHHHHTGGGTCEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCcEEEc
Confidence 37799999999999999988877766553
No 482
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=87.43 E-value=0.34 Score=55.79 Aligned_cols=31 Identities=29% Similarity=0.401 Sum_probs=24.5
Q ss_pred HHHHHHHHHhccEEEEecCCCCChhhHHHHHH
Q psy568 33 VLQLYQISNLNHGLMMVGPSGSGKSTAWKVLL 64 (1614)
Q Consensus 33 ~~qL~e~~~~r~gVmlvG~~gsGKTt~~~~L~ 64 (1614)
+-+|++.+. ..-+.|+||+|+||||++++|.
T Consensus 156 i~~L~~~l~-G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 156 IDELVDYLE-GFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp HHHHHHHTT-TCEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHhhcc-CcEEEEECCCCCCHHHHHHHHH
Confidence 345555543 5678999999999999999998
No 483
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=87.38 E-value=0.29 Score=53.75 Aligned_cols=27 Identities=19% Similarity=0.213 Sum_probs=23.0
Q ss_pred ccEEEEecCCCCChhhHHHHHHHHHHH
Q psy568 43 NHGLMMVGPSGSGKSTAWKVLLKALER 69 (1614)
Q Consensus 43 r~gVmlvG~~gsGKTt~~~~L~~al~~ 69 (1614)
...++|+||+||||||+.+.++..+..
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~ 49 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLR 49 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 345899999999999999999977654
No 484
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=87.35 E-value=0.3 Score=52.66 Aligned_cols=22 Identities=41% Similarity=0.564 Sum_probs=0.0
Q ss_pred EEEecCCCCChhhHHHHHHHHH
Q psy568 46 LMMVGPSGSGKSTAWKVLLKAL 67 (1614)
Q Consensus 46 VmlvG~~gsGKTt~~~~L~~al 67 (1614)
|.|.|++||||||+.+.|++.+
T Consensus 5 i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 5 VTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhc
No 485
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=87.32 E-value=0.25 Score=52.17 Aligned_cols=22 Identities=50% Similarity=0.753 Sum_probs=19.7
Q ss_pred cEEEEecCCCCChhhHHHHHHH
Q psy568 44 HGLMMVGPSGSGKSTAWKVLLK 65 (1614)
Q Consensus 44 ~gVmlvG~~gsGKTt~~~~L~~ 65 (1614)
.-|+|+|++|+||||+++.+.+
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4589999999999999998876
No 486
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=87.24 E-value=0.22 Score=54.76 Aligned_cols=47 Identities=17% Similarity=0.258 Sum_probs=31.5
Q ss_pred hcCCCEEEecCCCCchHHHHHHHHhcCC--CCceEEEEcccCCCHHHHHhH
Q psy568 414 AEHKPLVLCGPPGSGKTMTLLSALRALP--DMEVVSLNFSSATTPELLLKT 462 (1614)
Q Consensus 414 ~~~~~vLL~Gp~GtGKT~lv~~~~~~l~--~~~~~~i~~s~~t~~~~l~~~ 462 (1614)
..|.-++|+||+|+|||++++.++.... +..+..+.+ ..+...+...
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~--~~~~~~~~~~ 69 (235)
T 2w0m_A 21 PQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTT--EESRDSIIRQ 69 (235)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEES--SSCHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEc--ccCHHHHHHH
Confidence 3577899999999999999998885431 334544443 3345444443
No 487
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=87.21 E-value=0.41 Score=51.45 Aligned_cols=28 Identities=29% Similarity=0.409 Sum_probs=24.3
Q ss_pred cEEEeecCCCChHHHHHHHHHHcCCeEEE
Q psy568 759 HLLLIGVSGAGKTTLSRFVAFMNGLSVFQ 787 (1614)
Q Consensus 759 h~LLvG~~GsGKtsl~rlaA~~~~~~~~~ 787 (1614)
.+.++|++||||||+++.+|. .|..++.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~ 30 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLD 30 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEE
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEE
Confidence 378999999999999999999 7876664
No 488
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=87.21 E-value=0.42 Score=51.34 Aligned_cols=29 Identities=21% Similarity=0.263 Sum_probs=24.8
Q ss_pred cEEEeecCCCChHHHHHHHHHHcCCeEEE
Q psy568 759 HLLLIGVSGAGKTTLSRFVAFMNGLSVFQ 787 (1614)
Q Consensus 759 h~LLvG~~GsGKtsl~rlaA~~~~~~~~~ 787 (1614)
.++|.|++||||||+++.+|...|..++.
T Consensus 17 ~I~l~G~~GsGKsT~~~~L~~~~g~~~i~ 45 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQCEKLVKDYSFVHLS 45 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCceEEe
Confidence 37899999999999999999888876554
No 489
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=87.15 E-value=0.55 Score=54.39 Aligned_cols=50 Identities=18% Similarity=0.148 Sum_probs=34.5
Q ss_pred HhcCCCEEEecCCCCchHHHHHHHHhcC--CCCceEEEEcccCCCHHHHHhHhh
Q psy568 413 LAEHKPLVLCGPPGSGKTMTLLSALRAL--PDMEVVSLNFSSATTPELLLKTFD 464 (1614)
Q Consensus 413 l~~~~~vLL~Gp~GtGKT~lv~~~~~~l--~~~~~~~i~~s~~t~~~~l~~~~~ 464 (1614)
+..|.-++|.|+||+|||+++.+++... .+.++.. ||-..++..+...+.
T Consensus 65 l~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~--~slE~s~~~l~~R~~ 116 (315)
T 3bh0_A 65 YKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNL--HSLEMGKKENIKRLI 116 (315)
T ss_dssp BCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEE--EESSSCHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEE--EECCCCHHHHHHHHH
Confidence 4456779999999999999999888643 2344444 444566666655543
No 490
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=87.11 E-value=0.44 Score=57.30 Aligned_cols=29 Identities=28% Similarity=0.399 Sum_probs=24.6
Q ss_pred hccCCccEEEeecCCCChHHHHHHHHHHc
Q psy568 753 FRQPQGHLLLIGVSGAGKTTLSRFVAFMN 781 (1614)
Q Consensus 753 l~~p~gh~LLvG~~GsGKtsl~rlaA~~~ 781 (1614)
+..++|.++++||+||||||+.+.++...
T Consensus 163 ~~~~ggii~I~GpnGSGKTTlL~allg~l 191 (418)
T 1p9r_A 163 IKRPHGIILVTGPTGSGKSTTLYAGLQEL 191 (418)
T ss_dssp HTSSSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred HHhcCCeEEEECCCCCCHHHHHHHHHhhc
Confidence 45688889999999999999999877654
No 491
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=87.09 E-value=0.36 Score=57.95 Aligned_cols=39 Identities=33% Similarity=0.395 Sum_probs=28.3
Q ss_pred hccEEEEecCCCCChhhHHHHHHHHHHHhhcCCceEEEeCCC
Q psy568 42 LNHGLMMVGPSGSGKSTAWKVLLKALERYEGVEGVAHIIDPK 83 (1614)
Q Consensus 42 ~r~gVmlvG~~gsGKTt~~~~L~~al~~~~~~~~~~~~inPk 83 (1614)
.+..++|+||+||||||+.+.+...+... + ..+.+++|+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~-~--~~~~~~D~~ 72 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQ-G--SRVIIIDPE 72 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTT-T--CCEEEEESS
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHC-C--CEEEEEeCC
Confidence 35568999999999999999998776432 2 334555554
No 492
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=87.08 E-value=0.28 Score=50.20 Aligned_cols=22 Identities=36% Similarity=0.498 Sum_probs=19.5
Q ss_pred cEEEEecCCCCChhhHHHHHHH
Q psy568 44 HGLMMVGPSGSGKSTAWKVLLK 65 (1614)
Q Consensus 44 ~gVmlvG~~gsGKTt~~~~L~~ 65 (1614)
.-|+++|++|+||||+++.|..
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~ 25 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 3589999999999999998875
No 493
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=87.07 E-value=0.4 Score=52.61 Aligned_cols=29 Identities=28% Similarity=0.350 Sum_probs=25.5
Q ss_pred cEEEeecCCCChHHHHHHHHHHcCCeEEE
Q psy568 759 HLLLIGVSGAGKTTLSRFVAFMNGLSVFQ 787 (1614)
Q Consensus 759 h~LLvG~~GsGKtsl~rlaA~~~~~~~~~ 787 (1614)
.+.+.|++||||||+++.+|...|+.++.
T Consensus 11 ~i~i~G~~GsGKsTla~~la~~lg~~~~d 39 (233)
T 3r20_A 11 VVAVDGPAGTGKSSVSRGLARALGARYLD 39 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 58899999999999999999988876653
No 494
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=87.02 E-value=18 Score=33.57 Aligned_cols=56 Identities=11% Similarity=0.186 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q psy568 1243 LELKSLEVQASENKAKGEETKDLITQLEKSIASYKDEYAQLIAQATAIKTDLDNVQ 1298 (1614)
Q Consensus 1243 ~~l~~~~~~~~~~~~~l~~~~~~l~~~e~~l~~l~~~~~~~~~~~~~l~~~l~~~~ 1298 (1614)
.++..++.+...+..+.+.++..+...+.+...+..++..+....+.++.+++..+
T Consensus 9 kKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~ 64 (101)
T 3u59_A 9 KKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYS 64 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555555555555555555555555544444433
No 495
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=87.01 E-value=0.5 Score=51.70 Aligned_cols=28 Identities=21% Similarity=0.179 Sum_probs=23.5
Q ss_pred HhcCCCEEEecCCCCchHHHHHHHHhcC
Q psy568 413 LAEHKPLVLCGPPGSGKTMTLLSALRAL 440 (1614)
Q Consensus 413 l~~~~~vLL~Gp~GtGKT~lv~~~~~~l 440 (1614)
+..|.-+.|+||+|||||++++.++...
T Consensus 22 i~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 22 IETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3456779999999999999999998743
No 496
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=87.00 E-value=0.21 Score=54.01 Aligned_cols=25 Identities=20% Similarity=0.129 Sum_probs=21.9
Q ss_pred CCCEEEecCCCCchHHHHHHHHhcC
Q psy568 416 HKPLVLCGPPGSGKTMTLLSALRAL 440 (1614)
Q Consensus 416 ~~~vLL~Gp~GtGKT~lv~~~~~~l 440 (1614)
+.-|+|.|++||||||+++.+.+.+
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4568999999999999999888766
No 497
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=86.98 E-value=0.3 Score=50.10 Aligned_cols=22 Identities=23% Similarity=0.382 Sum_probs=19.5
Q ss_pred cEEEEecCCCCChhhHHHHHHH
Q psy568 44 HGLMMVGPSGSGKSTAWKVLLK 65 (1614)
Q Consensus 44 ~gVmlvG~~gsGKTt~~~~L~~ 65 (1614)
.-|+++|++|+||||+++.|..
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 4689999999999999988775
No 498
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=86.88 E-value=0.31 Score=51.79 Aligned_cols=36 Identities=25% Similarity=0.370 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHhccEEEEecCCCCChhhHHHHHHH
Q psy568 30 MEKVLQLYQISNLNHGLMMVGPSGSGKSTAWKVLLK 65 (1614)
Q Consensus 30 ~~K~~qL~e~~~~r~gVmlvG~~gsGKTt~~~~L~~ 65 (1614)
..++++-.....-..-|+++|++|+||||+++.|..
T Consensus 10 ~~~~l~~~~~~~~~~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 10 FRDVLASLGLWNKHGKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp --------------CEEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHHHHhhccCCccEEEEECCCCCCHHHHHHHHhc
Confidence 344444333334455799999999999999998865
No 499
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=86.85 E-value=0.15 Score=55.93 Aligned_cols=23 Identities=35% Similarity=0.507 Sum_probs=20.5
Q ss_pred EEEecCCCCChhhHHHHHHHHHH
Q psy568 46 LMMVGPSGSGKSTAWKVLLKALE 68 (1614)
Q Consensus 46 VmlvG~~gsGKTt~~~~L~~al~ 68 (1614)
+.|+||+||||||++++++.++.
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~~ 52 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTALI 52 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcccc
Confidence 46899999999999999999863
No 500
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=86.83 E-value=0.36 Score=56.10 Aligned_cols=29 Identities=21% Similarity=0.394 Sum_probs=25.3
Q ss_pred cEEEeecCCCChHHHHHHHHHHcCCeEEE
Q psy568 759 HLLLIGVSGAGKTTLSRFVAFMNGLSVFQ 787 (1614)
Q Consensus 759 h~LLvG~~GsGKtsl~rlaA~~~~~~~~~ 787 (1614)
+++|+|++|+||||+++.+|...+++++.
T Consensus 26 ~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 26 CVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 48999999999999999999988876633
Done!