RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy568
(1614 letters)
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 1273 bits (3295), Expect = 0.0
Identities = 674/1220 (55%), Positives = 894/1220 (73%), Gaps = 44/1220 (3%)
Query: 4 LKEKIKEVCREEFLVCGEGNEEGGPWMEKVLQLYQISNLNHGLMMVGPSGSGKSTAWKVL 63
L++KI+E+ ++ LV + W+EK+LQL+QI N+NHG+MMVGPSG GK+T+W+V
Sbjct: 873 LRKKIQEIAKQRHLVTKQ------EWVEKILQLHQILNINHGVMMVGPSGGGKTTSWEVY 926
Query: 64 LKALERYEGVEGVAHIIDPKAISKEALYGVLDPNTREWTDGLFTHILRRIIDNVRGEISK 123
L+A+E+ + ++ AH++DPKAI+K+ L+G LD TREWTDGLFT LRRIIDNVRGE +K
Sbjct: 927 LEAIEQVDNIKSEAHVMDPKAITKDQLFGSLDLTTREWTDGLFTATLRRIIDNVRGESTK 986
Query: 124 RQWIIFDGDVDPEWVENLNSVLDDNKLLTLPNGERLSLPPNIRIMFEVQDLKYATLATVS 183
R WIIFDGDVDPEWVENLNS+LDDNKLLTLPNGERL+LP N+R+MFEVQDLKYATLAT+S
Sbjct: 987 RHWIIFDGDVDPEWVENLNSLLDDNKLLTLPNGERLALPNNVRVMFEVQDLKYATLATIS 1046
Query: 184 RCGMIWFSEDVLSTEMIFENYLSRLRNIALDDIDDD-------------------SSLLI 224
RCGM+WFSE++L+T+MIF+NYL L N D + + S +L
Sbjct: 1047 RCGMVWFSEEILTTQMIFQNYLDTLSNEPFDPQEKEQQKRNENAQLQQQQQTTITSPILT 1106
Query: 225 TVDATGKA------PDDVLSPALTLQQDVASILSTHFAPDGLVVRALDYAMQQEHIMDFT 278
+ T + ++ L +Q++ A+I+S +F P GLV + L+ A Q+ HIMDFT
Sbjct: 1107 SPPTTSSSSRSTTSTTSMIPAGLKVQKECAAIISQYFEPGGLVHKVLEDAGQRPHIMDFT 1166
Query: 279 RLRALGSLFSMLNQGVRNVLQYNHSHSDFPLSQDVVERYIPRILVYSLLWSFAGDGKLKM 338
RLR L S FS++N+ + NV++YN HSDFP+S + YI L+YSL+W G L
Sbjct: 1167 RLRVLNSFFSLMNRSIVNVIEYNQLHSDFPMSPENQSNYITNRLLYSLMWGLGGSMGLVE 1226
Query: 339 RSDFGNFLRSVTTITLPATSSDIVDFEVNIKNGEWVPWSNKVPQIEVETQKVAASDVVVP 398
R +F F++++ +PA + ++D+ V+I + W W NKVP +EVET KVA+ DVV+P
Sbjct: 1227 RENFSKFIQTIAITPVPANTIPLLDYSVSIDDANWSLWKNKVPSVEVETHKVASPDVVIP 1286
Query: 399 TLDTVRHESLLYTWLAEHKPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTPEL 458
T+DT RH +L+ WL+EH+PL+LCGPPGSGKTMTL S LRA PD EVVSLNFSSATTPEL
Sbjct: 1287 TVDTTRHVDVLHAWLSEHRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATTPEL 1346
Query: 459 LLKTFDHYCEYRKTPNG-VILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQ 517
LLKTFDH+CEY++TP+G +L P QLGKWLV+FCDEINLP DKY TQRVI+F+RQ++E+
Sbjct: 1347 LLKTFDHHCEYKRTPSGETVLRPTQLGKWLVVFCDEINLPSTDKYGTQRVITFIRQMVEK 1406
Query: 518 RGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLRHVPVIYVDYPGETSLKQIYG 577
GF+R +D W+ L++IQ VGACNPPTD GR L+HRFLRH P++ VD+P +SL QIYG
Sbjct: 1407 GGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLRHAPILLVDFPSTSSLTQIYG 1466
Query: 578 TFSRAMLRLIPPLRGYADALTNAMVELYLASQEKFTQDMQPHYVYSPREMTRWVRGICEA 637
TF+RA+++L+P LR +AD LT+AMVE Y SQ++FT D+Q HY+YSPRE++RW R + EA
Sbjct: 1467 TFNRALMKLLPNLRSFADNLTDAMVEFYSESQKRFTPDIQAHYIYSPRELSRWDRALLEA 1526
Query: 638 IRPLESLTVEGLVRLWAHEALRLFQDRLVNDVERQWTNENIDAVAMKYFSNIDKEVLARP 697
I+ ++ T+EGLVRLWAHEALRLFQDRLV E++WT++ ID VA+K+F +++ + L RP
Sbjct: 1527 IQTMDGCTLEGLVRLWAHEALRLFQDRLVETEEKEWTDKKIDEVALKHFPSVNLDALKRP 1586
Query: 698 ILYSNWLSKNYVPVGTTELREYVQARLKVFYEEELDVQLVLFDEVLDHVLRIDRIFRQPQ 757
ILYSNWL+K+Y PV ++LREYV+ARLKVFYEEELDV LVLF+EVLDH+LRIDR+FRQPQ
Sbjct: 1587 ILYSNWLTKDYQPVNRSDLREYVKARLKVFYEEELDVPLVLFNEVLDHILRIDRVFRQPQ 1646
Query: 758 GHLLLIGVSGAGKTTLSRFVAFMNGLSVFQIRAHNKYTGADFDEDLRTVLRRSGCKNEKI 817
GH LLIGVSG GK+ LSRFVA+MNGLS++ I+ +N Y +DFD+DLR +L+R+GCK EKI
Sbjct: 1647 GHALLIGVSGGGKSVLSRFVAWMNGLSIYTIKVNNNYKSSDFDDDLRMLLKRAGCKEEKI 1706
Query: 818 AFLLDESNVLESGFLERMNTLLANGEIPGLFEGDEYTTLMTQCKEGAQREGLMLDSNEEL 877
F+ DESNVLES FLERMNTLLA GE+PGLFEG+E+T LM CKE AQR GL+LDS EEL
Sbjct: 1707 CFIFDESNVLESSFLERMNTLLAGGEVPGLFEGEEFTALMHACKETAQRNGLILDSEEEL 1766
Query: 878 YKWFTQQVMKNLHVVFTMNPSSEGLKDRAATSPALFNRCVLNWFGDWSDTALYQVAKEFT 937
YK+FT QV +NLHVVFTMNP+S +R+ATSPALFNRCVL+WFG+WS AL+QV EFT
Sbjct: 1767 YKYFTSQVRRNLHVVFTMNPASPDFHNRSATSPALFNRCVLDWFGEWSPEALFQVGSEFT 1826
Query: 938 SKIDLDGPQNWKAPDFFPSVCSLV-----STTPSHRDSVINACVYVHQTLHKANARLSKR 992
+DL+ P + AP F ++ + PSHRD+V+++ VY+HQT+ +AN RL KR
Sbjct: 1827 RNLDLENP-QYIAPPVFIQEAEIMGNNLMAIPPSHRDAVVSSLVYIHQTIGEANIRLLKR 1885
Query: 993 GSRTMAITPRHYLDFINHFVKLYREKCSELEEQQLHLNVGLGKIAETVEQVEEMQKSLAV 1052
R +TPRHYLDFIN V L EK +LEE+QLHLN+GL K+ +T QV+++Q SLA
Sbjct: 1886 QGRQNYVTPRHYLDFINQVVLLINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQ 1945
Query: 1053 KSQELQSKNEAANLKLKEMIKDQQEAEKRKVQSQDIQAEIEKQTVEIAQKRVFVMEDLAQ 1112
K++EL KNE AN KLK+M++DQQ AE ++ ++++Q +++ + EIA ++V DL +
Sbjct: 1946 KNRELDVKNEQANQKLKQMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQKVKAYADLEK 2005
Query: 1113 VEP------AVMDAQQAVKEIKKQQLVELRSMANPPSVVKLALESICLLLGENATDWKAI 1166
EP V + A E+K +Q + ++ + E L+ E
Sbjct: 2006 AEPTGPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTES 2065
Query: 1167 RAVVMRENFINSIVSNFNTE 1186
V + + +++ N N+E
Sbjct: 2066 SKVKNKVDRSIALLDNLNSE 2085
Score = 419 bits (1078), Expect = e-120
Identities = 222/436 (50%), Positives = 287/436 (65%), Gaps = 25/436 (5%)
Query: 1179 IVSNFNTEMITDEVREKMHSRYLSNPDYSYEKANRASMACGPMVKWAIAQISYADMLKKV 1238
V N ++ + + + D + V+ A +
Sbjct: 1951 DVKNEQANQKLKQMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQKVKAYADLEKA-EPT 2009
Query: 1239 EPLRLELKSLEVQASENKAKGEETKDLITQLEKSIASYKDEYAQLIAQATAIKTDLDNVQ 1298
PLR E++ LE A+E K K +E IT LEKSIA+YK+EYA LI + IKT+ V+
Sbjct: 2010 GPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVK 2069
Query: 1299 AKFYEYAQLIAQATAIKTDLDNVQAKVERSMALLKSLGIERERWEATSETFRSQMATIIG 1358
K V+RS+ALL +L ER RWE SE F +QM+T++G
Sbjct: 2070 NK------------------------VDRSIALLDNLNSERGRWEQQSENFNTQMSTVVG 2105
Query: 1359 DVLLSSAYLAYAGYFDQHYRQSLFSTWNSHLIAAGIQFRPEIALTEYLSSPDERLRWQGN 1418
DV+L+SA+LAY G+FDQ++R L W L + GI+F+ ++++ +LS P+ERL W N
Sbjct: 2106 DVVLASAFLAYIGFFDQNFRTDLMRKWMIRLDSVGIKFKSDLSVPSFLSKPEERLNWHAN 2165
Query: 1419 ALPSDHLCTENAIMLRRFNRYPLIIDPSGQATEFILKEFESRKITKTSFLDDAFRKNLES 1478
+LPSD LC ENAIML+RFNRYPL+IDPSGQA EF++ ++ +KITKTSFLD +F KNLES
Sbjct: 2166 SLPSDELCIENAIMLKRFNRYPLVIDPSGQAMEFLMNQYADKKITKTSFLDSSFMKNLES 2225
Query: 1479 ALRFGNPLLVQDVENYDTILNPVLNRELRRTGGRVLITLGDQDIDISPTFVIFLSTRDPT 1538
ALRFG PLLVQDVEN D +LNPVLN+E+R+ GGR+LI LGDQD+D SP+F+IFL TRDPT
Sbjct: 2226 ALRFGCPLLVQDVENIDPVLNPVLNKEIRKKGGRILIRLGDQDVDFSPSFMIFLFTRDPT 2285
Query: 1539 VEFPPDICSRVTFVNFTVTRSSLQSQCLNRVLKAERPDIDTKRSDLLKLQGEFHLRLRHL 1598
F PD+CSRVTFVNFTVT SSLQSQCL+ LK ERPD KRSDLLK+QGEF ++LR L
Sbjct: 2286 AHFTPDLCSRVTFVNFTVTPSSLQSQCLHEALKTERPDTHKKRSDLLKIQGEFQVKLRIL 2345
Query: 1599 EKSLLGALNESKGKLL 1614
EKSLL AL+++ G +L
Sbjct: 2346 EKSLLNALSQASGNIL 2361
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 1243 bits (3217), Expect = 0.0
Identities = 419/1409 (29%), Positives = 677/1409 (48%), Gaps = 149/1409 (10%)
Query: 4 LKEKIKEVCREEFLVCGEGNEEGGPWMEKVLQLYQISNLNHGLMMVGPSGSGKSTAWKVL 63
+ + +K+ + E +++K +Q Y + L++VG +G GK+ WK +
Sbjct: 890 IVQCLKDAGQRSGFSMSE------EFLKKCMQFYYMQKTQQALILVGKAGCGKTATWKTV 943
Query: 64 LKALERYEGVEGVAHIIDPKAISKEALYGVLDPNTREWTDGLFTHILRRIIDNVRGEI-S 122
+ A+ ++G V ++ID K ++KE+LYG + T EW DGLFT ILRR+ D++ G +
Sbjct: 944 IDAMAIFDGHANVVYVIDTKVLTKESLYGSMLKATLEWRDGLFTSILRRVNDDITGTFKN 1003
Query: 123 KRQWIIFDGDVDPEWVENLNSVLDDNKLLTLPNGERLSLPPNIRIMFEVQDLKYATLATV 182
R W++FD D+DPE+VE +NSVLDDNK+LTLPNGERL +PPN RI+FE +L + T AT+
Sbjct: 1004 SRIWVVFDSDLDPEYVEAMNSVLDDNKILTLPNGERLPIPPNFRILFETDNLDHTTPATI 1063
Query: 183 SRCGMIWFSEDVLSTEMIFENYLSRLRNIALDDIDDDSSLLITVDATGKAPDDVLSPALT 242
+RCG++WFS DV S ++ L++ + +
Sbjct: 1064 TRCGLLWFSTDVCSISSKIDHLLNKSYEALDNKLSM-----------------------F 1100
Query: 243 LQQDVASILSTHFAPDGLVVRALDYAMQQ-EHIMDFTRLRALGSLFSMLNQGVRNVLQYN 301
+ ++S F D + + HI+ L + + V + Y
Sbjct: 1101 ELDKLKDLISDSF--DMASLTNIFTCSNDLVHILGVRTFN---KLETAVQLAVHLISSYR 1155
Query: 302 HSHSDFPLSQDVVERYIPRILVYSLLWSFAGDGKLKMRSDFGNFLRSVTTITLPATSSDI 361
+ L ++ I ++ SLL++ AGD + + F + + SD
Sbjct: 1156 QWFQN--LDDKSLKDVITLLIKRSLLYALAGDSTGESQRAFIQTINTYFGHDSQ-ELSDY 1212
Query: 362 VDFEVNIKNGEWVPWSNKVPQIEVETQKVAASDVVVPTLDTVRHESLLYTWLAEHKPLVL 421
+ + + +++P + +E +V D+V+PT+DT++HE + Y L + ++L
Sbjct: 1213 STIVIANDKLSFSSFCSEIPSVSLEAHEVMRPDIVIPTIDTIKHEKIFYDLLNSKRGIIL 1272
Query: 422 CGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTPELLLKTFDHYCEYRKTPNGVILSPI 481
CGPPGSGKTM + +ALR +VV +NFS TT E +L + Y T G+ L P
Sbjct: 1273 CGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTTEHILSALHRHTNYVTTSKGLTLLPK 1332
Query: 482 QLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACN 541
K LVLFCDEINLP +DKY +Q V+ FLRQL+E++GF++ + +WV++ERI VGACN
Sbjct: 1333 SDIKNLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACN 1392
Query: 542 PPTDPGRKPLSHRFLRHVPVIYVDYPGETSLKQIYGTFSRAMLRLIPPLRGYADALTNAM 601
PPTDPGR P+S RF RH ++Y+ YP SL QIY + +A+ +L+P R Y + A
Sbjct: 1393 PPTDPGRIPMSERFTRHAAILYLGYPSGKSLSQIYEIYYKAIFKLVPEFRSYTEPFARAS 1452
Query: 602 VELYLASQEKFTQDMQPHYVYSPREMTRWVRGICEAIRPLESLTVEGLVRLWAHEALRLF 661
V LY + +++ +Q HY++SPRE+TR VRG+ AI T+ L+RLWA+EA R+F
Sbjct: 1453 VHLYNECKARYSTGLQSHYLFSPRELTRLVRGVYTAINTGPRQTLRSLIRLWAYEAWRIF 1512
Query: 662 QDRLVNDVERQWTNENIDAVAMKYFSNIDKEVL-ARPILYSNWLSKNYVPVGTTELREYV 720
DRLV E+ + + KY N D + + +L+S LS ++ V T+L ++
Sbjct: 1513 ADRLVGVKEKNSFEQLLYETVDKYLPNQDLGNISSTSLLFSGLLSLDFKEVNKTDLVNFI 1572
Query: 721 QARLKVFYEEELDVQLVLFDEVLDHVLRIDRIFRQPQGHLLLIGVSGAGKTTLSRFVAFM 780
+ R K F +EEL+V +V+ + ++DH+LRIDR +Q QGH++LIG S GKT L+RFVA++
Sbjct: 1573 EERFKTFCDEELEVPMVIHESMVDHILRIDRALKQVQGHMMLIGASRTGKTILTRFVAWL 1632
Query: 781 NGLSVFQIRAHNKYTGADFDEDLRTVLRRSGCKNEKIAFLLDESNVLESGFLERMNTLLA 840
NGL + Q + H +DFD L+ + K + ++DESN+LE+ FLERMNTLLA
Sbjct: 1633 NGLKIVQPKIHRHSNLSDFDMILKKAISDCSLKESRTCLIIDESNILETAFLERMNTLLA 1692
Query: 841 NGEIPGLFEGDEYTTLMTQCKEGAQREGLMLDSNEELYKWFTQQVMKNLHVVFTMNPSSE 900
N +IP LF+G+EY L+ + + GL+LD+ +ELY WF ++ KNLHVVFT+ +
Sbjct: 1693 NADIPDLFQGEEYDKLLNNLRNKTRSLGLLLDTEQELYDWFVGEIAKNLHVVFTICDPTN 1752
Query: 901 GLKDRAATSPALFNRCVLNWFGDWSDTALYQVAKEFTSKIDLDGPQNWKAPDFFPSVCSL 960
+SPALFNRC++NW GDW + QVA I ++ V
Sbjct: 1753 NKSSAMISSPALFNRCIINWMGDWDTKTMSQVANNMVDVIPMEFTDFIVPEVNKELVF-- 1810
Query: 961 VSTTPSHRDSVINACVYVHQTLHKANARLSKRGSRTMAITPRHYLDFINHFVKLYREKCS 1020
+ RD+V+N ++ + ++ +P +++D + VKL K
Sbjct: 1811 TEPIQTIRDAVVNILIHFDRNFYQKMKV------GVNPRSPGYFIDGLRALVKLVTAKYQ 1864
Query: 1021 ELEEQQLHLNVGLGKIAETVEQVEEMQKSLAVKSQE-LQSKNEAANLKLKEMIKDQQEAE 1079
+L+E Q +NVGL K+ E+V +V E+ K+L++ + L + E K+ K QE
Sbjct: 1865 DLQENQRFVNVGLEKLNESVLKVNELNKTLSISLVKSLTFEKERWLNTTKQFSKTSQELI 1924
Query: 1080 K-------------------RKVQSQDIQAEIEKQTVEI-------------AQKRVFVM 1107
R ++ + K V+ +K ++
Sbjct: 1925 GNCIISSIYETYFGHLNERERADMLVILKRLLGKFAVKYDVNYRFIDYLVTLDEKMKWLE 1984
Query: 1108 EDL----------------AQVEPAVMDAQ-QAVKEIKKQQLVELRSMANPPSVVKL--- 1147
L P ++D + I N ++
Sbjct: 1985 CGLDKNDYFLENMSIVMNSQDAVPFLLDPSSHMITVISNYY-------GNKTVLLSFLEE 2037
Query: 1148 ----ALESICLLLG-----ENATDWKAIRAVVMRENFI---NSIVSNFNTEMI--TDEVR 1193
LE+ + G ++ + I + ++ F N + + + + +
Sbjct: 2038 GFVKRLEN-AIRFGSVVIIQDGEFFDPIISRLISREFNHAGNRVTVEIGDHEVDVSGDFK 2096
Query: 1194 EKMHSRYLSNPDYSYEKANRASMACGPMVKWAIAQISYAD-MLKKVEPLRLELKSLEVQA 1252
+HS + D +R +V + + S + L E ++ +
Sbjct: 2097 LFIHSC-DPSGDIPIFLRSRVR-----LVHFVTNKESIETRIFDIT--LTEENAEMQRKR 2148
Query: 1253 SENKAKGEETKDLITQLEKSIASYKDEYAQLIAQATAIKTDLDNVQAKFYEYAQLIAQAT 1312
+ E K + LEK + L + L+N +L+
Sbjct: 2149 EDLIKLNTEYKLKLKNLEKRL---------LEELNNSQGNMLEND--------ELMVTLN 2191
Query: 1313 AIKTDLDNVQAKVERSMALLKSLGIERER 1341
+K + N++ K+ S E
Sbjct: 2192 NLKKEAMNIEKKLSESEEFFPQFDNLVEE 2220
Score = 346 bits (890), Expect = 6e-97
Identities = 94/343 (27%), Positives = 171/343 (49%), Gaps = 14/343 (4%)
Query: 1273 IASYKDEYAQLIAQATAIKTDLDNVQAKFYEYAQLIAQATAIKTDLDNVQAKVERSMALL 1332
+ + + ++ K E + + S++L+
Sbjct: 1852 LRALVKLVTAKYQDLQENQRFVNVGLEKLNESVLKVNEL------------NKTLSISLV 1899
Query: 1333 KSLGIERERWEATSETFRSQMATIIGDVLLSSAYLAYAGYFDQHYRQSLFSTWNSHLIAA 1392
KSL E+ERW T++ F +IG+ ++SS Y Y G+ ++ R + L
Sbjct: 1900 KSLTFEKERWLNTTKQFSKTSQELIGNCIISSIYETYFGHLNERERADMLVILKRLLGKF 1959
Query: 1393 GIQFRPEIALTEYLSSPDERLRWQGNALPSDHLCTENA-IMLRRFNRYPLIIDPSGQATE 1451
+++ +YL + DE+++W L + EN I++ + P ++DPS
Sbjct: 1960 AVKYDVNYRFIDYLVTLDEKMKWLECGLDKNDYFLENMSIVMNSQDAVPFLLDPSSHMIT 2019
Query: 1452 FILKEFESRKITKTSFLDDAFRKNLESALRFGNPLLVQDVENYDTILNPVLNRELRRTGG 1511
I + K SFL++ F K LE+A+RFG+ +++QD E +D I++ +++RE G
Sbjct: 2020 VI-SNYYGNKTVLLSFLEEGFVKRLENAIRFGSVVIIQDGEFFDPIISRLISREFNHAGN 2078
Query: 1512 RVLITLGDQDIDISPTFVIFLSTRDPTVEFPPDICSRVTFVNFTVTRSSLQSQCLNRVLK 1571
RV + +GD ++D+S F +F+ + DP+ + P + SRV V+F + S++++ + L
Sbjct: 2079 RVTVEIGDHEVDVSGDFKLFIHSCDPSGDIPIFLRSRVRLVHFVTNKESIETRIFDITLT 2138
Query: 1572 AERPDIDTKRSDLLKLQGEFHLRLRHLEKSLLGALNESKGKLL 1614
E ++ KR DL+KL E+ L+L++LEK LL LN S+G +L
Sbjct: 2139 EENAEMQRKREDLIKLNTEYKLKLKNLEKRLLEELNNSQGNML 2181
>2rr7_A Dynein heavy chain 9; microtubule-binding, stalk head, MTBD,
antiparallel coil, motor protein, DSH; NMR {Chlamydomonas
reinhardtii}
Length = 155
Score = 163 bits (415), Expect = 1e-46
Identities = 41/152 (26%), Positives = 79/152 (51%), Gaps = 15/152 (9%)
Query: 1108 EDLAQVEPAVMDAQQAVKEIKKQQLVELRSMANPPSVVKLALESICLLLGENAT------ 1161
DLA+ P + A +A+ +K + E++ M +PP+ V+ LE+IC++ G
Sbjct: 4 ADLAEALPLLEAALKALDTLKPADITEVKGMKSPPAGVRRVLEAICIMKGVKPARVKDTA 63
Query: 1162 -------DWKAIRAVVMRENFINSIVSNFNTEMITDEVREKMHSRYLSNPDYSYEKANRA 1214
W+A + ++M +F++S+ F+ + I EV K+ + +P++ + +
Sbjct: 64 SGRMVDDYWEASKKMLMEFDFLDSLR-KFDKDHIPPEVIVKI-RPFAQDPEFQPKVIEKQ 121
Query: 1215 SMACGPMVKWAIAQISYADMLKKVEPLRLELK 1246
S+AC + W IA Y ++K+VEP R +L+
Sbjct: 122 SVACAGLCSWVIALEKYDKVIKEVEPKRQKLR 153
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic
dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP;
2.27A {Mus musculus}
Length = 536
Score = 115 bits (291), Expect = 1e-26
Identities = 106/171 (61%), Positives = 133/171 (77%), Gaps = 1/171 (0%)
Query: 1088 IQAEIEKQTVEIAQKRVFVMEDLAQVEPAVMDAQQAVKEIKKQQLVELRSMANPPSVVKL 1147
+ ++ KQ IA K++ V EDL +VEPAV++AQ AVK IKKQ LVE+RSMANPP+ VKL
Sbjct: 33 VDEQLHKQQEVIADKQMSVKEDLDKVEPAVIEAQNAVKSIKKQHLVEVRSMANPPAAVKL 92
Query: 1148 ALESICLLLGENATDWKAIRAVVMRENFINSIVSNFNTEMITDEVREKMHSRYLSNPDYS 1207
ALESI LLLGE+ TDWK IR+++MRENF + NF+ E I+D +REKM Y+SNP Y+
Sbjct: 93 ALESIALLLGESTTDWKQIRSIIMRENF-IPTIVNFSAEEISDAIREKMKKNYMSNPSYN 151
Query: 1208 YEKANRASMACGPMVKWAIAQISYADMLKKVEPLRLELKSLEVQASENKAK 1258
YE NRAS+A GPMVKWAIAQ++YADMLK+VEPLR EL+ LE A +N+ K
Sbjct: 152 YEIVNRASLAAGPMVKWAIAQLNYADMLKRVEPLRNELQKLEDDAKDNQQK 202
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 93.4 bits (231), Expect = 4e-19
Identities = 102/639 (15%), Positives = 201/639 (31%), Gaps = 167/639 (26%)
Query: 299 QYNHSHSDFPLSQDVVERYIPRILVYSLLWSFAGDGKLKMRSDFGNFLRSVTT------- 351
++H H DF + +Y + ++ +F + K D + +S+ +
Sbjct: 1 HHHHHHMDFETGE---HQYQYKDILSVFEDAFVDNFDCK---DVQDMPKSILSKEEIDHI 54
Query: 352 --------------ITLPATSSDIVD-F--EVNIKNGEWV--PWS--NKVPQIE----VE 386
TL + ++V F EV N +++ P + P + +E
Sbjct: 55 IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIE 114
Query: 387 TQKVAASDV-VVPTLDTVRHESL--LYTWLAEHKP---LVLCGPPGSGKTMTLLSALRAL 440
+ +D V + R + L L E +P +++ G GSGKT + AL
Sbjct: 115 QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKT-WV--ALDVC 171
Query: 441 PDMEVVS--------LNFSSATTPELLLKTFDHYCEYRKTPNGVILSPIQLGKWLVLFCD 492
+V LN + +PE +L+ Y+ PN +
Sbjct: 172 LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL-YQIDPN---------------WTS 215
Query: 493 EINLPDMDKYATQRVISFLRQLIEQRGFYRP-------ADKQWVSLERIQC--------- 536
+ K + + LR+L++ + + + + + + C
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFK 275
Query: 537 --------VGACNPPTDPGRKPLSHR-----FLRHVPVIYVDYPGETS------LKQIYG 577
+ D L+ L+++ D P E L I
Sbjct: 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII-A 334
Query: 578 TFSRAMLRLIPPLRGY-ADALTNAMVELYLASQEKFTQDMQPHYVYSPREMTRWVRGICE 636
R L + D LT + E L E + + + +
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLTTII-ESSLNVLE--PAEYRKMF----DRL--------- 378
Query: 637 AIRPLES-LTVEGLVRLWAH---EALRLFQDRLVN--DVERQWTNE--NIDAVAMKYFSN 688
++ P + + L +W + + ++L VE+Q +I ++ ++
Sbjct: 379 SVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVK 438
Query: 689 IDKEV-LARPILYSNWLSKNYVP--VGTTELREYVQARLKVFY--------EEELDVQLV 737
++ E L R I+ + K + + L +Y FY E ++
Sbjct: 439 LENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY-------FYSHIGHHLKNIEHPERMT 491
Query: 738 LFDEV-LDHVLR-IDRIFRQPQGHLLLIGVSGAGKTTLSRFVAFMNGLSVFQIRAHNKYT 795
LF V LD R +++ R SG+ TL + + + KY
Sbjct: 492 LFRMVFLD--FRFLEQKIRHDS---TAWNASGSILNTLQQLKFYKP----YICDNDPKYE 542
Query: 796 G-----ADFDEDLRTVLRRSGCKN-EKIAFLLDESNVLE 828
DF + L S + +IA + ++ + E
Sbjct: 543 RLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFE 581
Score = 80.7 bits (198), Expect = 4e-15
Identities = 116/773 (15%), Positives = 230/773 (29%), Gaps = 261/773 (33%)
Query: 609 QEKFTQDMQPHYVYSPREMTRWVRGICEAIRPLESLTVEGLVRLWAHEALRLFQDRLVND 668
++ F + V ++M + + L ++ ++ RL
Sbjct: 26 EDAFVDNFDCKDV---QDMPKSI---------LSKEEIDHIIMS-KDAVSGT--LRLFWT 70
Query: 669 VERQWTNENIDAVAMKYFSNIDKEVLAR--PILYSNWLSKNYVPVGTTELREYVQARLKV 726
+ + E + ++ F EVL L S ++ P T Y++ R ++
Sbjct: 71 LLSK--QEEM----VQKFVE---EVLRINYKFLMSPIKTEQRQPSMMTR--MYIEQRDRL 119
Query: 727 FYEEELDVQLVLFDEVLDHVLRIDRIFR--------QPQGHLLLIGVSGAGKTTL----- 773
+ D Q+ F + +V R+ + +P ++L+ GV G+GKT +
Sbjct: 120 YN----DNQV--FAK--YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVC 171
Query: 774 --SRFVAFMNGLSVFQIRAHNKYTGADFDEDLRTVLRRSGCKNEKIAFLLDESNVLESGF 831
+ M+ +F + N + E +
Sbjct: 172 LSYKVQCKMDF-KIFWLNLKNCNS----PETV---------------------------- 198
Query: 832 LERMNTLLANGEIPGLFEGDEYTTLMTQCKEGAQREGLMLDSNEELYKWFTQQVMKNLHV 891
LE + LL + D + + + ++ L
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE-------------------LRRL-- 237
Query: 892 VFTMNPSSEGLKDRAATSPALFNRCVLNWFGDWSDTALYQVAKEFTSKIDLDGPQNWKAP 951
LK + + C+L L QN KA
Sbjct: 238 ----------LKSK------PYENCLL----------------------VLLNVQNAKAW 259
Query: 952 DFFPSVCSLVSTTPSHRDS----VINACVYVHQTLHKANARLSKRGSRTMAITPRHYLDF 1007
+ F C ++ TT R ++A H +L + L+ +++
Sbjct: 260 NAFNLSCKILLTT---RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL---------- 306
Query: 1008 INHFVKLYREKCSELEEQQLHLN-VGLGKIAETVEQVEEMQKSLAVKSQELQSKNEAANL 1066
+K + +L + L N L IA E ++ LA +
Sbjct: 307 ---LLKYLDCRPQDLPREVLTTNPRRLSIIA------ESIRDGLATWDNWKHVNCD---- 353
Query: 1067 KLKEMIKDQQEAEKRKVQSQDIQAEIEKQTVEIAQKRVFVMEDLAQVEPAVM-------- 1118
KL +I + + + AE K ++ VF A + ++
Sbjct: 354 KLTTII-------ESSLNVLE-PAEYRKMFDRLS---VF-PPS-AHIPTILLSLIWFDVI 400
Query: 1119 --DAQQAVKEIKKQQLVELRSMANPPSVVKLALESICLLLGENATDWKAIRAVVMRENFI 1176
D V ++ K LVE + P +++ SI L L + A+
Sbjct: 401 KSDVMVVVNKLHKYSLVEKQ-----PKESTISIPSIYLELKVKLENEYALH--------- 446
Query: 1177 NSIVSNFNTEMITDEVREKMHSRYLSNP---DYSYEKANRASMACGPMVKWAIA-QISYA 1232
SIV ++N + + S L P Y Y I +
Sbjct: 447 RSIVDHYN-------IPKTFDSDDLIPPYLDQYFY---------------SHIGHHLKNI 484
Query: 1233 DMLKKVEPLR---LELKSLEV---QASENKAKGEETKDLITQLEKSIASYKD-------E 1279
+ +++ R L+ + LE S + + QL+ YK +
Sbjct: 485 EHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKF----YKPYICDNDPK 540
Query: 1280 YAQLIAQATAIKTDLDNVQAKFY--EYAQLIAQATAIKTDLDNVQAKVERSMA 1330
Y +L+ AI L ++ +Y L+ + A+ + + + + + +
Sbjct: 541 YERLV---NAILDFLPKIEENLICSKYTDLL-R-IALMAEDEAIFEEAHKQVQ 588
Score = 77.2 bits (189), Expect = 4e-14
Identities = 65/470 (13%), Positives = 135/470 (28%), Gaps = 143/470 (30%)
Query: 4 LKEKIKEVCR------EEFLVCGE----GNEEGGPW----MEKVLQLYQ-ISNLNH--GL 46
L IK R ++ + N+ + ++ L+L Q + L +
Sbjct: 94 LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNV 153
Query: 47 MMVGPSGSGKSTAWKVLLKALERYEGVE----------GVAHIIDPKAISK--EALYGVL 94
++ G GSGK+ + + V+ + + P+ + + + L +
Sbjct: 154 LIDGVLGSGKT----WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209
Query: 95 DPNTREWTDGLFTHILRRIIDNVRGEIS--------KRQWIIFDGDV-DPEWVENLN--- 142
DPN +D LR I +++ E+ + ++ +V + + N
Sbjct: 210 DPNWTSRSDHSSNIKLR--IHSIQAELRRLLKSKPYENCLLVLL-NVQNAKAWNAFNLSC 266
Query: 143 ---------SVLDD--------------NKLLTLPNGERL----------SLPPNIRIMF 169
V D + LT + L LP
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR------ 320
Query: 170 EVQDLKYATLATVSRCGMIW-FSEDVLSTEMIFENY-------LSRLRNIALDDIDDD-- 219
+ L +I D L+T ++N+ L+ + +L+ ++
Sbjct: 321 --EVLTTNPRR----LSIIAESIRDGLAT---WDNWKHVNCDKLTTIIESSLNVLEPAEY 371
Query: 220 ----SSLLITVDATGKAPDDVLSPALTLQ--------QDVASILSTHFAPDGLVVRALDY 267
L + P P + L DV ++ LV +
Sbjct: 372 RKMFDRLSVF-------PPSAHIPTILLSLIWFDVIKSDVMVVV-NKLHKYSLVEK--QP 421
Query: 268 AMQQEHIMD-FTRLRALGSLFSMLNQGVRNVLQYNHSHSDFP--LSQDVVERYIPRILVY 324
I + L+ L++ + + YN + L +++Y + +
Sbjct: 422 KESTISIPSIYLELKVKLENEYALHRSIVD--HYNIPKTFDSDDLIPPYLDQYFYSHIGH 479
Query: 325 SLLWSFAGDGKLKMRS---DFGNFLRS---VTTITLPATSS---DIVDFE 365
L + R DF FL + A+ S + +
Sbjct: 480 HLKNIEHPERMTLFRMVFLDF-RFLEQKIRHDSTAWNASGSILNTLQQLK 528
Score = 72.2 bits (176), Expect = 1e-12
Identities = 81/598 (13%), Positives = 186/598 (31%), Gaps = 178/598 (29%)
Query: 1003 HYLDFINHFVKLYREKCSELEEQQLH----LNVGLGKIAET--VEQVEEMQKSLAVKSQE 1056
H++DF E E Q L+V + + V++M KS + +E
Sbjct: 5 HHMDF-------------ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKS-ILSKEE 50
Query: 1057 ----LQSKN-EAANLKLKEMIKDQQEAE----------------KRKVQSQDIQAEIEKQ 1095
+ SK+ + L+L + +QE ++++ Q + +
Sbjct: 51 IDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTR 110
Query: 1096 TVEIAQKR------VFVMEDLAQVEPAVMDAQQAVKEIKKQQLVELRSMANP-PSVVKLA 1148
+ R VF ++++++P + +QA+ E++ + V + + + +A
Sbjct: 111 MYIEQRDRLYNDNQVFAKYNVSRLQP-YLKLRQALLELRPAKNVLIDGVLGSGKTW--VA 167
Query: 1149 LESIC---------------LLLGENATDWKAIRAVVMRENFINSIVSNF--------NT 1185
L+ +C L L + + M + + I N+ N
Sbjct: 168 LD-VCLSYKVQCKMDFKIFWLNLKNCNSPETVLE---MLQKLLYQIDPNWTSRSDHSSNI 223
Query: 1186 EMITDEVREKMHSRYLSNPDY----------SYEKANRA-SMACGPMVKWAIAQISYADM 1234
++ ++ ++ R L + Y KA A +++C ++ D
Sbjct: 224 KLRIHSIQAEL-RRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILL--TTRFKQVTDF 280
Query: 1235 LKKVEPLRLELKSLEVQASENKAKGEETKDLITQ-LEKSIASYKDEYAQ----LIAQ-AT 1288
L + L + + +E K L+ + L+ E ++ A
Sbjct: 281 LSAATTTHISLDHHSMTLTP-----DEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAE 335
Query: 1289 AIKTDLDNVQAKFYEYAQLIAQATAIKTDLDNVQAKVERSMALLKSLGIERER------- 1341
+I+ L +++ T I++ L+ ++ R + L +
Sbjct: 336 SIRDGLA--TWDNWKHVNCDKLTTIIESSLNVLEPAEYR--KMFDRLSVFPPSAHIPTIL 391
Query: 1342 ----WEATSETFRSQMATIIGDVLLSSAYLAYAGYFDQHYRQSLFSTWNSHL-IAAGIQF 1396
W ++ + L L ++ ++S S + +L + ++
Sbjct: 392 LSLIWFDVIKSDVMVVVN-----KLHKYSLV-----EKQPKESTISIPSIYLELKVKLEN 441
Query: 1397 RPEI--ALTEYLSSPDERLRWQGNALPSD---------HLCTENAIMLRRFNRYPLIIDP 1445
+ ++ ++ + P D HL +N R + ++
Sbjct: 442 EYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHL--KNIEHPERMTLFRMV--- 496
Query: 1446 SGQATEFILKEFESRKITKTSFLDDAFRKNLESALRFGNPL---------LVQDVENY 1494
FLD F LE +R + +Q ++ Y
Sbjct: 497 ---------------------FLDFRF---LEQKIRHDSTAWNASGSILNTLQQLKFY 530
Score = 54.5 bits (130), Expect = 3e-07
Identities = 59/355 (16%), Positives = 116/355 (32%), Gaps = 86/355 (24%)
Query: 61 KVLLKALERYEGVEGVAHIIDPKAISKEALYGVLDPNTREWTDGLFTHILRRIIDNVRGE 120
K+LL R++ V + + +L T + L L ++ E
Sbjct: 267 KILL--TTRFKQV---TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE 321
Query: 121 ISK-------------RQWII-FDGDVDPEW----VENLNSVLDDNKLLTL-PNGER--- 158
+ R + +D W + L ++++ + L L P R
Sbjct: 322 VLTTNPRRLSIIAESIRDGLATWD-----NWKHVNCDKLTTIIE-SSLNVLEPAEYRKMF 375
Query: 159 --LS-LPPNIRIMFEVQDLKYATLATVSRCGMIWFSEDVLSTEMIFENYLSRLRNIALDD 215
LS PP+ I L+ +IWF ++ +++L +L +
Sbjct: 376 DRLSVFPPSAHIP-------TILLS------LIWFDVIKSDVMVV----VNKLHKYSLVE 418
Query: 216 IDDDSSLL----ITVDATGKAPDDVLSPAL---TLQQDVASILSTHFAPDGLVVRALD-- 266
S + I ++ K ++ AL + + F D L+ LD
Sbjct: 419 KQPKESTISIPSIYLELKVKLENE---YALHRSIVDHYN---IPKTFDSDDLIPPYLDQY 472
Query: 267 ------YAMQQ-EHIMDFTRLRALGSLFSMLNQGVRNV-LQYNHSHSDFPLSQDVVERYI 318
+ ++ EH T R + F L Q +R+ +N S S Q + + Y
Sbjct: 473 FYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQL-KFYK 531
Query: 319 PRILVYSLLWSFAGDGKLKMR-SDFGNFLRSVTTITLPATSSDIVDFEVNIKNGE 372
P I D K + + +FL + + + +D++ + ++
Sbjct: 532 PYI--------CDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEA 578
Score = 50.6 bits (120), Expect = 4e-06
Identities = 82/514 (15%), Positives = 160/514 (31%), Gaps = 141/514 (27%)
Query: 1065 NLKLKEMIKDQQEAEKRKVQSQDIQAEIEKQTVEIAQKRVFVMEDLAQVEPAVMDAQQAV 1124
+ K+++ ++A +D+Q K + E+ +
Sbjct: 15 QYQYKDILSVFEDAFVDNFDCKDVQDMP---------KSILSKEE--------------I 51
Query: 1125 KEIKKQQLVELRSMANPPSVVKLALESICLLL-GENATDWKAIRAV--VMRENFINSIVS 1181
I +V LL E + V V+R N+ ++S
Sbjct: 52 DHIIMS----------KDAVSGTLRLFWTLLSKQEEMVQ----KFVEEVLRINY-KFLMS 96
Query: 1182 NFNTEMITDEVREKMHSRY---LSNPDYSYEKANRASMACGPMVKWAIAQISYAD----- 1233
TE + +M+ L N + + K N + + ++ A+ ++ A
Sbjct: 97 PIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID 156
Query: 1234 -ML---KKVEPLRLE-LKSLEVQ-ASENK------AKGEETKDLITQLEKSIASYKDEYA 1281
+L K + L+ S +VQ + K + ++ L+K + +
Sbjct: 157 GVLGSGKTW--VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWT 214
Query: 1282 QLIAQATAIKTDLDNVQAKF--------YEYAQLIAQATAIKTDLDNVQ-AKVERSMALL 1332
++ IK + ++QA+ YE L+ L NVQ AK + L
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV---------LLNVQNAKAWNAFNLS 265
Query: 1333 -KSLGIERERWEATSETFRSQMATIIGDVLLSSAYLAYAGYFDQHYRQSLFSTWNSHLIA 1391
K L R + + + + ++ +SL +
Sbjct: 266 CKILLTTRFKQVTDFLSAATTTHISLDHHSMT---------LTPDEVKSLLLKY------ 310
Query: 1392 AGIQFR--PEIALTEYLSSP------DERLRWQGNALPSDHLCT-ENAIMLRRFNRYPL- 1441
+ + P LT ++P E +R D L T +N + N L
Sbjct: 311 LDCRPQDLPREVLT---TNPRRLSIIAESIR--------DGLATWDN---WKHVNCDKLT 356
Query: 1442 -IIDPSGQATEFILKEFESRKITKTSFLDDA-FRKNL---ESALRFGNPLLVQDVENYDT 1496
II+ S L+ E RK+ F + F + L L+ DV D
Sbjct: 357 TIIESSLNV----LEPAEYRKM----FDRLSVFPPSAHIPTILL----SLIWFDVIKSDV 404
Query: 1497 --ILNPVLNREL-RRTGGRVLITLGDQDIDISPT 1527
++N + L + I++ +++
Sbjct: 405 MVVVNKLHKYSLVEKQPKESTISIPSIYLELKVK 438
Score = 37.5 bits (86), Expect = 0.044
Identities = 47/370 (12%), Positives = 108/370 (29%), Gaps = 108/370 (29%)
Query: 1275 SYKDEYAQLIAQA--TAIKTDLDNVQAKFYEYAQLIAQATAIKTDLDNVQAKVERSMALL 1332
YKD I A + D + + + K ++D++ + L
Sbjct: 17 QYKD-----ILSVFEDAFVDNFD-----CKDVQDMPKSILS-KEEIDHIIMSKDAVSGTL 65
Query: 1333 KSLGIERERWEATSETFRSQMATIIGDVLLSSAYLAYAGYFDQHYRQSLFSTWNSHLIAA 1392
+ + E + F + +VL +Y+ + + +
Sbjct: 66 RLFWTLLSKQEEMVQKF-------VEEVL------------RINYK------F----LMS 96
Query: 1393 GIQFR---PEIALTEYLSSPDERLRWQGNALPSDHLCTENAIMLRRF-NRYPLIIDPSGQ 1448
I+ P + Y+ +R D L +N + + +R + +
Sbjct: 97 PIKTEQRQPSMMTRMYIE---QR----------DRLYNDNQVFAKYNVSRLQPYL----K 139
Query: 1449 ATEFILKEFESRKIT--------KTSFLDDAFRKNLESALRFGNP---LLVQDVENYDTI 1497
+ +L+ ++ + KT D + + + L +++ + +T+
Sbjct: 140 LRQALLELRPAKNVLIDGVLGSGKTWVALDVCL-SYKVQCKMDFKIFWLNLKNCNSPETV 198
Query: 1498 LNPVLNRELRRTGGRVLITLGDQDI-------DISPTFVIFLSTRDPTVEFPP------D 1544
L + L + D I L ++ + +
Sbjct: 199 LEMLQK--LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP----YENCLLVLLN 252
Query: 1545 ICSRVTFVNFTVTRSSLQSQCLNRVLKAERPDIDTKRSDLLKLQGEFHLRLRHLEKSLLG 1604
+ + + F + C ++L R + +D L H+ L H +L
Sbjct: 253 VQNAKAWNAFNL-------SC--KILLTTR---FKQVTDFLSAATTTHISLDHHSMTL-- 298
Query: 1605 ALNESKGKLL 1614
+E K LL
Sbjct: 299 TPDEVKSLLL 308
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 71.6 bits (175), Expect = 2e-12
Identities = 106/580 (18%), Positives = 183/580 (31%), Gaps = 193/580 (33%)
Query: 208 LRNIALDDIDDDSSLLITVDATGKAPDDVLSPALTLQQDVASIL---STHFAPD------ 258
R + L + LL+ P A LQ+ IL + FA D
Sbjct: 6 TRPLTLSHGSLEHVLLV--------PTASFFIASQLQEQFNKILPEPTEGFAADDEPTTP 57
Query: 259 -GLVVRALDYAMQQEHIMDFTRLRALGSLFSMLNQGVRNVLQYN--HS-------HSDFP 308
LV + L Y + + L L + L+ N H+ +D
Sbjct: 58 AELVGKFLGYVSSLVEPSKVGQFDQV--LNLCLTEFENCYLEGNDIHALAAKLLQENDTT 115
Query: 309 L--SQDVVERYIP-RILVY--------SLLWSFAGDGKLKMRSDF---GN----F--LRS 348
L ++++++ YI RI+ S L+ G+G ++ + F GN F LR
Sbjct: 116 LVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRD 175
Query: 349 VTTI--------------TLPATSSDIVDFEVNIKNG----EW---------------VP 375
+ TL +D E G EW +P
Sbjct: 176 LYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIP 235
Query: 376 WSNKVPQIEVETQKVAASDVVVPTLDTVRHESLLYTWLAEHKPLVLCGPPGSGKTMTLLS 435
S P I V Q A VV L L L G +G + L++
Sbjct: 236 IS--CPLIGV-IQ--LAHYVVTAKLLGFTPGELRS---------YLKG--ATGHSQGLVT 279
Query: 436 ALR-ALPD---------MEVVSLNF-----------SSATTPELLLKTFDHYCEYRKTP- 473
A+ A D + +++ F +++ P +L + ++ E +P
Sbjct: 280 AVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLEN-NEGVPSPM 338
Query: 474 ---NGVILSPIQLGKWLVLFCDEIN--LPDMDKY-------ATQRVIS-FLRQLIEQRGF 520
+ L+ Q+ ++ ++ N LP + A V+S + L G
Sbjct: 339 LSISN--LTQEQVQDYV----NKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSL---YGL 389
Query: 521 YRPADKQWVSLERIQCVGACNPPTDP--GRKP-LSHRFLR-----H-------VPVIYVD 565
+L + + + P RK S+RFL H +I D
Sbjct: 390 NL-------TLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKD 442
Query: 566 YPGETSLKQIYGTFSRAMLRLIP--------PLRGYADALTNAMVELYLASQ---EKFTQ 614
L + +F+ ++ IP LR + +++ +V+ + E TQ
Sbjct: 443 ------LVKNNVSFNAKDIQ-IPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQ 495
Query: 615 DMQPHYV-YSPREMTRWVRGICEAIRPLESLTVEGL-VRL 652
H + + P G + L +G VR+
Sbjct: 496 FKATHILDFGP--------GGASGLGVLTHRNKDGTGVRV 527
Score = 65.1 bits (158), Expect = 2e-10
Identities = 78/468 (16%), Positives = 168/468 (35%), Gaps = 130/468 (27%)
Query: 51 PSGSGKSTAWKVLLKALERYEGVEGVAHIIDPKAISKEALY---GVLDPNTREWTDGL-- 105
P ++A L +A+ EG A ++ A++ G NT ++ + L
Sbjct: 136 PFDKKSNSA---LFRAVG-----EGNAQLV--------AIFGGQG----NTDDYFEELRD 175
Query: 106 ----FTHILRRIIDN--------VRGEISKRQWIIFDGDVDP-EWVENLNSVLDDNKLLT 152
+ ++ +I +R + + +F ++ EW+EN ++ D + LL+
Sbjct: 176 LYQTYHVLVGDLIKFSAETLSELIRTTLDAEK--VFTQGLNILEWLENPSNTPDKDYLLS 233
Query: 153 LPNGERLSLPPNIRIMFEVQDLKYATLATV----------SRCGMIWFSEDVLSTEMI-- 200
+P +S P ++ +Q Y A + G S+ +++ I
Sbjct: 234 IP----ISCP----LIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAE 285
Query: 201 ---FENYLSRLRNIALDDIDDDSSLL--ITVDATGKAPDDVLSPALTLQQDVASILSTHF 255
+E++ +R A+ ++L I V P+ L P++ +D S+ +
Sbjct: 286 TDSWESFFVSVRK-AI-------TVLFFIGVRCYEAYPNTSLPPSIL--ED--SLENNEG 333
Query: 256 APDG-LVVRALDYAMQQEHIMDF-TRLRALGSLF-SMLNQGVRN-VLQYNHSHSDFPLSQ 311
P L + L Q+++ + L A + S++N G +N V+ S P S
Sbjct: 334 VPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVN-GAKNLVV------SGPPQSL 386
Query: 312 DVVERYIPRILVYSLLWSFAGDGKLKMRSDF--------GNFLRSVTTITLP------AT 357
L +L + A G + R F FL + P
Sbjct: 387 --------YGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLP----VASPFHSHLLVP 434
Query: 358 SSDIVDFEVNIKNGEWVPWSNKVPQIEVET----QKVAASDVVVPTL-DTVRHESLLYTW 412
+SD+++ ++ N + ++P + + ++ S + + D + + W
Sbjct: 435 ASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGS--ISERIVDCIIRLPVK--W 490
Query: 413 LAEHKP----LVLCGPPGSGKTMTLLSALRALPDMEVV---SLNFSSA 453
+ ++ GP G+ L + + V+ +L+ +
Sbjct: 491 ETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPD 538
Score = 61.6 bits (149), Expect = 2e-09
Identities = 101/605 (16%), Positives = 185/605 (30%), Gaps = 187/605 (30%)
Query: 121 ISKRQWIIFDGDVDPEWV--ENLN---SVLDDNKLLTLPN-------GERLSLPPNIRIM 168
S R + G ++ + S L + LP + + P +
Sbjct: 4 YSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGK 63
Query: 169 FEVQDLKY-ATLATVSRCGMIWFSEDVLSTEMI-FE-NYLSRLRNI-----ALDDIDD-- 218
F L Y ++L S+ G + VL+ + FE YL +I L +D
Sbjct: 64 F----LGYVSSLVEPSKVGQF---DQVLNLCLTEFENCYL-EGNDIHALAAKLLQENDTT 115
Query: 219 --DSSLLIT-----VDATGKAPDDVLSPAL--TLQQDVASILS---------THFAPDGL 260
+ LI + D + AL + + A +++ +F + L
Sbjct: 116 LVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYF--EEL 173
Query: 261 VVRALDYAMQQEHIMDFTRLRA--LGSL-------FSMLNQGVRNVLQYNHSHSDFPLSQ 311
R L Y + D + A L L + QG+ N+L++ + S+ P +
Sbjct: 174 --RDL-YQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGL-NILEWLENPSNTP-DK 228
Query: 312 DVVERY---IPRILVYSLLWSFAGDGK-LKMR-SDFGNFLRSVTTI-------TLPATSS 359
D + P I V L + K L + ++L+ T A +
Sbjct: 229 DYLLSIPISCPLIGVIQLA-HYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETD 287
Query: 360 DIVDFEVNIKNG-EWVPW----SNKV-PQIEVETQKVAASDVV---VPT--LDTVRHESL 408
F V+++ + + + P + + S VP+ L ++ + +
Sbjct: 288 SWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPML-SISNLTQ 346
Query: 409 --LYTWLAE---HKP---------------LVLCGPPGS--GKTMTLLSALR---ALPDM 443
+ ++ + H P LV+ GPP S G L LR A +
Sbjct: 347 EQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYG----LNLTLRKAKAPSGL 402
Query: 444 E-----------VVSLNFSSATTP---ELLLKTFDHYCEYRKTPNGVILSPIQLGKWLVL 489
+ S F +P LL+ D + N V + + +
Sbjct: 403 DQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINK-DLVKNNVSFNAKDIQIPVYD 461
Query: 490 FCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRK 549
D +L + ++R++ +I P W + + T
Sbjct: 462 TFDGSDLRVLSGSISERIV---DCIIRL-----PVK--WETTTQ-------FKAT----- 499
Query: 550 PLSHRFLRHVPVIYVDY-PGETS--------LKQIYGTFSRAMLRLIPPLRGYADALTNA 600
H+ +D+ PG S K G +R+I A L
Sbjct: 500 --------HI----LDFGPGGASGLGVLTHRNKDGTG------VRVIV-----AGTLDIN 536
Query: 601 MVELY 605
+ Y
Sbjct: 537 PDDDY 541
Score = 57.4 bits (138), Expect = 4e-08
Identities = 112/626 (17%), Positives = 188/626 (30%), Gaps = 215/626 (34%)
Query: 474 NGVILSPIQL--GK----WLV---LFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPA 524
+ P+ L G LV F A+Q F + L E P
Sbjct: 2 DAYSTRPLTLSHGSLEHVLLVPTASFF----------IASQLQEQFNKILPE------PT 45
Query: 525 DKQWVSLERIQCVGACNPPTDPGRKPLSHRFLRHVPVIYVDYPGETS-----LKQIYGTF 579
+ E PT P L +FL +V V+ P + L F
Sbjct: 46 EGFAADDE----------PTTPA--ELVGKFLGYV-SSLVE-PSKVGQFDQVLNLCLTEF 91
Query: 580 SRAMLRLIPPLRGYAD--ALTNAMVELYLASQEKFTQDMQPHYVYSPREMTRWVRGICEA 637
L G D AL +++ + K T+++ +Y + R M +
Sbjct: 92 ENCYLE------G-NDIHALAAKLLQENDTTLVK-TKELIKNY-ITARIMAK-------- 134
Query: 638 IRPLESLTVEGLVRLWAHEALRLF-----QDRLVNDVERQWTNENIDAVAMKYFSNIDKE 692
RP + + L R +L Q N D YF +E
Sbjct: 135 -RPFDKKSNSALFRAVGEGNAQLVAIFGGQG-------------NTDD----YF----EE 172
Query: 693 VLARPILYSNWLSKNYVPVGTTELREYVQARLKVFYEEELDVQLVLFDEVLDHVLR-IDR 751
L LY + Y + +L ++ L LD + +F + L+ +L ++
Sbjct: 173 -LRD--LY-----QTYHVL-VGDLIKFSAETLSELIRTTLDAE-KVFTQGLN-ILEWLEN 221
Query: 752 IFRQP-QGHLLLIGVS--GAGKTTLSRFVAFMN--GLSVFQIRAHNK------------- 793
P + +LL I +S G L+ +V G + ++R++ K
Sbjct: 222 PSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAV 281
Query: 794 -----YTGADFDEDLRTVLR---RSGCKNEKIAF---LLDESNVLESGFLERMNTLLANG 842
+ F +R + G + + A+ L S + +S L N
Sbjct: 282 AIAETDSWESFFVSVRKAITVLFFIGVRCYE-AYPNTSLPPSILEDS---------LENN 331
Query: 843 E-IPGLFEGDEYTTLMTQCKEGAQREGL--MLDS-NEELYKWFTQQV---MKN--LHVVF 893
E +P + M +E + ++ N L +QV + N ++V
Sbjct: 332 EGVP---------SPMLSIS-NLTQEQVQDYVNKTNSHLPA--GKQVEISLVNGAKNLVV 379
Query: 894 TMNPSS-EGL-----KDRAATS------------PALFNRCVLNWFGDWSD---TALYQV 932
+ P S GL K +A + NR F + + L
Sbjct: 380 SGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNR-----FLPVASPFHSHLLVP 434
Query: 933 AKEFTSKIDLDGPQ-NWKAPDF-FP--------SVCSLVST-TPSHRDSVINACVYVHQT 981
A + +K DL ++ A D P + L + + D +I V T
Sbjct: 435 ASDLINK-DLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETT 493
Query: 982 LHKANARLSKRGSRTMAITPRHYLDF 1007
H LDF
Sbjct: 494 TQF---------------KATHILDF 504
Score = 56.2 bits (135), Expect = 1e-07
Identities = 94/548 (17%), Positives = 158/548 (28%), Gaps = 173/548 (31%)
Query: 1131 QLVELRSMANPPSVVKLALESICLLLGENATDWKAIRAVVMRENFINSIVSNFNTEMITD 1190
LVE + V+ L L EN + N I+++ + E T
Sbjct: 70 SLVEPSKVGQFDQVLNLCLTEF-----ENC---------YLEGNDIHALAAKLLQENDTT 115
Query: 1191 EVREKMHSRYLSNPDYSYEKANRASMACGPMVKWAIAQISYADMLKKVEPLRLELKS-LE 1249
V+ K + +Y A + P + S L
Sbjct: 116 LVKTKELIK-------NYITARIMA----------------------KRPFDKKSNSALF 146
Query: 1250 VQASENKAK--------GEETKDLITQLEKSIASYKDEYAQLIAQATAIKTDL--DNVQA 1299
E A+ G T D +L +Y LI + ++L + A
Sbjct: 147 RAVGEGNAQLVAIFGGQG-NTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDA 205
Query: 1300 -KFYEYA-QLIA--QATAIKTDLDNVQAKVERSMALL------------KSLGIERERWE 1343
K + ++ + + D D + + S L+ K LG
Sbjct: 206 EKVFTQGLNILEWLENPSNTPDKDYL-LSIPISCPLIGVIQLAHYVVTAKLLGF------ 258
Query: 1344 ATSETFRSQM--ATIIGDVLLSSAYLAYAGYFDQHYRQS------LFST-WNSHLIAAGI 1394
T RS + AT L+++ +A ++ + LF +
Sbjct: 259 -TPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCY------ 311
Query: 1395 QFRPEIALTEYLSSPDERLRWQGNALPSDHL----CTENAI--MLRRFNRY-P------- 1440
+ P +L + +PS L T+ + + + N + P
Sbjct: 312 EAYPNTSLPPSILEDSLE---NNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEI 368
Query: 1441 -LIIDP-----SGQATEFILKEFES--RKITKTSFLDDA---F--RKNLESALRFGN--- 1484
L+ SG L RK S LD + F RK L+F N
Sbjct: 369 SLVNGAKNLVVSGPPQS--LYGLNLTLRKAKAPSGLDQSRIPFSERK-----LKFSNRFL 421
Query: 1485 --------PLL-------VQDVENYDTILN------PVLN----RELRRTGGRVLITLGD 1519
LL +D+ + N PV + +LR G + + D
Sbjct: 422 PVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVD 481
Query: 1520 QDIDISP----TFVIFLSTRDPTVEFPPDICSRVTFVNFTVTRSSLQSQCLNRVLKAERP 1575
I P T F +T ++F P S + +T + + RV+ A
Sbjct: 482 C-IIRLPVKWETTTQFKATH--ILDFGPGGASGLG----VLTHRNKDGTGV-RVIVAG-- 531
Query: 1576 DIDTKRSD 1583
+D D
Sbjct: 532 TLDINPDD 539
Score = 47.0 bits (111), Expect = 6e-05
Identities = 48/319 (15%), Positives = 98/319 (30%), Gaps = 105/319 (32%)
Query: 1329 MALLKSLGIERERWEATSETFRSQMATIIGDVLLS---SAYLAYAGYFDQHYRQSLFSTW 1385
M L K+ ++ W F+ I D++++ + + + G + R++ +
Sbjct: 1633 MDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMI 1692
Query: 1386 NSHLIAAGIQFRPEIA-LTEYLSSPDERLRWQGNALPSDHL-CTEN---AIMLRRFNRYP 1440
++ ++ + E+ +S ++ L T+ A+
Sbjct: 1693 FETIVDGKLKTEKIFKEINEHSTS----YTFRS---EKGLLSATQFTQPALT-------- 1737
Query: 1441 LIIDPSGQATEF-ILKEFESRKITKTSFLDDAF----------------RKNLESALR-- 1481
E ++ +S+ + D F ++ES +
Sbjct: 1738 --------LMEKAAFEDLKSKGLIP---ADATFAGHSLGEYAALASLADVMSIESLVEVV 1786
Query: 1482 F--GNPLLVQDV--------ENYDTI-LNPVLNRELRRTGGRVLITLGDQDIDISPTFVI 1530
F G + +Q NY I +NP GRV + + + V
Sbjct: 1787 FYRG--MTMQVAVPRDELGRSNYGMIAINP----------GRVAASFSQEALQ---YVVE 1831
Query: 1531 FLSTRDPTVEFPPDICSRVTFVNF------TV---TRSSLQSQCLNRVLKAERPDIDTKR 1581
+ R T V VN+ V +L + VL I ++
Sbjct: 1832 RVGKR--TGWL-------VEIVNYNVENQQYVAAGDLRALD--TVTNVLNF----IKLQK 1876
Query: 1582 SDLLKLQGEFHL-RLR-HL 1598
D+++LQ L + HL
Sbjct: 1877 IDIIELQKSLSLEEVEGHL 1895
Score = 41.6 bits (97), Expect = 0.003
Identities = 49/320 (15%), Positives = 93/320 (29%), Gaps = 133/320 (41%)
Query: 1014 LYREKCSE-----LEEQQLHLNVGLG-KIAETVEQVEEMQKSLAV-----KSQELQ---- 1058
LY+ S+ H G I + V +L + K + ++
Sbjct: 1635 LYKT--SKAAQDVWNRADNHFKDTYGFSILDIVI---NNPVNLTIHFGGEKGKRIRENYS 1689
Query: 1059 ----SKNEAANLKLKEMIKDQQEAEKRKVQSQDIQAEIE--KQTVEIAQKRVFVMEDLAQ 1112
LK +++ K+ E S ++E T + Q + +ME A
Sbjct: 1690 AMIFETIVDGKLKTEKIFKEINE----HSTSYTFRSEKGLLSAT-QFTQPALTLME-KAA 1743
Query: 1113 VE--------PA--------------------VMDAQQAVKEIKKQQLVELR-------- 1136
E PA VM + V+ +V R
Sbjct: 1744 FEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVE------VVFYRGMTMQVAV 1797
Query: 1137 ----------SMA--NPPSVVKL----ALESICLLLGENATDWKAIRAVVMRENFINSIV 1180
M NP V AL+ + +G+ T W +V IV
Sbjct: 1798 PRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGK-RTGW-----LV-------EIV 1844
Query: 1181 SNFNTEMITDEVREKMHSRYLSNPDYSYEKANRASMACGPMVKWAIAQISYADMLKKVEP 1240
N+N E + +Y ++ A+ ++ ++L ++
Sbjct: 1845 -NYNVE----------NQQY----------------VAAGDLR-ALDTVT--NVLNFIKL 1874
Query: 1241 LRLELKSLEVQASENKAKGE 1260
++++ L+ S + +G
Sbjct: 1875 QKIDIIELQKSLSLEEVEGH 1894
Score = 39.6 bits (92), Expect = 0.010
Identities = 55/310 (17%), Positives = 98/310 (31%), Gaps = 114/310 (36%)
Query: 128 IFDGDVDPEWVENLN-SVLD---DNKLLTLPNGERLSLPPNIRIMFEVQDLKYATLATVS 183
+++ D + + S+LD +N P N+ I F + K
Sbjct: 1645 VWN-RADNHFKDTYGFSILDIVINN-------------PVNLTIHFGGEKGKR------- 1683
Query: 184 RCGMIWFSEDVLSTEMIFENYLSRLRNIALD----------DIDDDSSLLITVDATGKAP 233
I ENY + + +D +I++ S+ T ++
Sbjct: 1684 ----------------IRENYSAMIFETIVDGKLKTEKIFKEINEHSTSY-----TFRSE 1722
Query: 234 DDVLS------PALTLQQDVASILSTHFAPDGLVVRALDYAMQQEHIMDFTRLRALG-SL 286
+LS PALTL A ++ + ++ A G SL
Sbjct: 1723 KGLLSATQFTQPALTL----MEK-------------AAFEDLKSKGLIPADATFA-GHSL 1764
Query: 287 --FSMLNQGVRNVLQYNHSHSD-FPLSQDVVERYIPRILVYS--LLWSFAGDGKLKMRSD 341
++ L S +D + +VE +V+ + A RS+
Sbjct: 1765 GEYAAL-----------ASLADVMSIE-SLVE------VVFYRGMTMQVAVPRDELGRSN 1806
Query: 342 FG----NFLRSVTTITLPATSSDIVDFEVNIKNGEWVPWSN-KVP--QIEVETQKVAASD 394
+G N R + + A +V+ V + G V N V Q V + A D
Sbjct: 1807 YGMIAINPGRVAASFSQEA-LQYVVE-RVGKRTGWLVEIVNYNVENQQY-VAAGDLRALD 1863
Query: 395 VVVPTLDTVR 404
V L+ ++
Sbjct: 1864 TVTNVLNFIK 1873
Score = 37.3 bits (86), Expect = 0.049
Identities = 41/266 (15%), Positives = 81/266 (30%), Gaps = 77/266 (28%)
Query: 843 EIPGLFEG-------DEYTTLMTQ-CKEG-AQREGLMLDSNEELYKWFTQQVMKNLHVVF 893
+ F G + Y+ ++ + +G + E + + NE +
Sbjct: 1671 NLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTS-------------Y 1717
Query: 894 TMNPSSEGLKDRAATSPALFNRCVLNWFGDWSDTALYQVAKEFTSKIDLDGPQNWKAPDF 953
T L T PAL A ++ K G A
Sbjct: 1718 TFRSEKGLLSATQFTQPALTL---------ME-KAAFEDLKS-------KG--LIPADAT 1758
Query: 954 FP--SV---CSLVSTTPSHRDSVIN---ACVYVHQ---TLHKANARLSKRGSRT--MAIT 1000
F S+ +L S V++ V T+ A R S +AI
Sbjct: 1759 FAGHSLGEYAALASLA-----DVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAIN 1813
Query: 1001 P-RHYLDF----INHFVKLYREKCSELEE--------QQLHLNVGLGKIAETVEQVEEMQ 1047
P R F + + V+ ++ L E QQ V G + ++ V +
Sbjct: 1814 PGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQY---VAAGDL-RALDTVTNVL 1869
Query: 1048 KSLAVKSQELQSKNEAANL-KLKEMI 1072
+ ++ ++ ++ +L +++ +
Sbjct: 1870 NFIKLQKIDIIELQKSLSLEEVEGHL 1895
Score = 36.2 bits (83), Expect = 0.13
Identities = 96/607 (15%), Positives = 177/607 (29%), Gaps = 218/607 (35%)
Query: 839 LANGEIPGLFEGDEYTTLM--------TQCKE------GAQREGLMLD----SNEELYKW 880
L++G + E+ L+ +Q +E EG D + EL
Sbjct: 11 LSHGSL-------EHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGK 63
Query: 881 FTQQVMKNLHVVFTMNPSSEGLKDRAATSPALFNRCVLNWFGDWSDTALYQVAKEFTSKI 940
F +V + PS G D+ VLN L EF +
Sbjct: 64 FLG------YVSSLVEPSKVGQFDQ-----------VLN-------LCL----TEFENCY 95
Query: 941 DLDGPQNWKAPDFFPSVCSLVSTTPSHRDSVI-----------NACVYVHQTLHKANA-- 987
L+G N D + +L + D+ + A + + K +
Sbjct: 96 -LEG--N----D----IHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSA 144
Query: 988 --RLSKRGS-RTMAI-----TPRHYLDFINHFVKLYREKCSELEEQQLHLNVGLGKIAET 1039
R G+ + +AI Y + EL + L+ + +
Sbjct: 145 LFRAVGEGNAQLVAIFGGQGNTDDYFE--------------EL--RDLY-QTYHVLVGDL 187
Query: 1040 VEQVEEMQKSLAVKSQELQSKNEAANLKLKEMIKDQQEAEKRKVQSQDIQAEIEKQTVEI 1099
++ E L E+I+ +AEK Q +I +E +
Sbjct: 188 IKFSAET---------------------LSELIRTTLDAEKVFTQGLNILEWLENPSNTP 226
Query: 1100 AQKRVFVMEDLAQVE---PAVMDAQQAVKEIKKQQLVELRSMANPPSVVKLALESICLLL 1156
+ + L + P + Q A +V + + P ++ L+
Sbjct: 227 DK------DYLLSIPISCPLIGVIQLA------HYVVTAKLLGFTPGELRSYLKGA-TGH 273
Query: 1157 GEN---------ATDWKAIRAVVMRENFINSIVSNFNTEMITDE----VREKMHSRYLSN 1203
+ W E+F S+ + IT VR + Y
Sbjct: 274 SQGLVTAVAIAETDSW---------ESFFVSVR-----KAITVLFFIGVR--CYEAY--- 314
Query: 1204 PDYSYE-KANRASMACG-----PMVKWAIAQISYADMLKKVEPLRLELKSLE-VQAS-EN 1255
P+ S S+ PM+ +I+ ++ + V L + + V+ S N
Sbjct: 315 PNTSLPPSILEDSLENNEGVPSPML--SISNLTQEQVQDYVNKTNSHLPAGKQVEISLVN 372
Query: 1256 KAK-----G--EETKDLITQLEKSIAS-----YKDEYAQ-------------------LI 1284
AK G + L L K+ A + +++ L+
Sbjct: 373 GAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLL 432
Query: 1285 AQATA-IKTDLDNVQAKFYEYAQL-IAQ-ATAIKTDLDNVQAKVERSMALLKSLGIERER 1341
A+ I DL F + I T +DL + + ++ + +
Sbjct: 433 VPASDLINKDLVKNNVSF-NAKDIQIPVYDTFDGSDLRVLSGSISER--IVDCIIRLPVK 489
Query: 1342 WEATSET 1348
WE T++
Sbjct: 490 WETTTQF 496
Score = 33.9 bits (77), Expect = 0.61
Identities = 25/122 (20%), Positives = 49/122 (40%), Gaps = 27/122 (22%)
Query: 61 KVLLKALERYE-GVEGVAHI-IDPKAISK----EALYGVLDPNTREWTDGLFTHILRRII 114
+ A+ R E G I I+P ++ EAL V++ + T L I+
Sbjct: 1791 MTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKR-TGWLV-----EIV 1844
Query: 115 -DNVRGEISKRQWIIFDGDVDPEWVENLNSVLDDNKLLTLPNGERLSLPPNIRIMFEVQD 173
NV + Q++ GD+ ++ + +VL+ KL + E L +++
Sbjct: 1845 NYNVENQ----QYVA-AGDLRA--LDTVTNVLNFIKLQKIDIIE---LQ----KSLSLEE 1890
Query: 174 LK 175
++
Sbjct: 1891 VE 1892
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 56.8 bits (137), Expect = 6e-08
Identities = 50/325 (15%), Positives = 111/325 (34%), Gaps = 28/325 (8%)
Query: 1012 VKLYREKCSELEEQQLHLNVGLGKIAETVEQVEEMQKSLAVKSQELQSKNEAANLKLKEM 1071
+K +K ++L E++ L L E + EEM+ LA K QEL+ +++E
Sbjct: 880 LKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEE 939
Query: 1072 IKDQQEAEKRKVQSQDIQAEIEKQTVEIAQKRVFVMEDLAQVEPAVMDAQQAVKEIKKQQ 1131
+ Q+ + K + Q ++E+Q E R + + + + + + ++ Q
Sbjct: 940 EERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMED-Q 998
Query: 1132 LVELRSMANPPSVVKLALESICLLLGENATDWKAIRAVVMRENFINSIVSNFNTEMITDE 1191
+L + LE + + + + + + E + E
Sbjct: 999 NNKLTKE-------RKLLEE------RVSDLTTNLAEEEEKAKNLTKLKNKH--ESMISE 1043
Query: 1192 VREKMHSRYLSNPDYSYEKANRASMACGPMVKWA-IAQISYADMLKKVEPLRLELKSLEV 1250
+ ++ EK R + + A++ ++ L+ +L E
Sbjct: 1044 LEVRLKK--EEKSRQELEKIKRK------LEGESSDLHEQIAELQAQIAELKAQLAKKEE 1095
Query: 1251 QASENKAKGEETKDLITQLEKSIASYKDEYAQLIAQATAIKTDLDNVQAKFYEYAQLIAQ 1310
+ A+ E+ K I + + L + K + + + L +
Sbjct: 1096 ELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEK---QKRDLSEE 1152
Query: 1311 ATAIKTDLDNVQAKVERSMALLKSL 1335
A+KT+L++ L S
Sbjct: 1153 LEALKTELEDTLDTTATQQELRGSD 1177
Score = 35.6 bits (82), Expect = 0.19
Identities = 18/119 (15%), Positives = 51/119 (42%), Gaps = 4/119 (3%)
Query: 1017 EKCSELEEQQLHLNVGLGKIAETVEQVEEMQKSLAVKSQELQSKNEAANLKLKEMIKDQQ 1076
+ S+L EQ L + ++ + + EE ++ + ++ S+ A K++E+
Sbjct: 1067 GESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHIS 1126
Query: 1077 EAEKRKVQSQDIQAEIEKQTVEIAQKRVFVMEDLAQVEPAVMDAQQAVKEIKKQQLVEL 1135
+ ++ + + + EKQ +++++ +E L +D +E++ +
Sbjct: 1127 DLQEDLESEKAARNKAEKQKRDLSEE----LEALKTELEDTLDTTATQQELRGSDYKDD 1181
Score = 33.7 bits (77), Expect = 0.76
Identities = 14/126 (11%), Positives = 47/126 (37%), Gaps = 9/126 (7%)
Query: 1232 ADMLKKVEPLRLELKSLEVQASENKAKGEETKDL---ITQLEKSIASYKDEYAQLIAQAT 1288
+M ++E + L+ +E K ++ DL + + E + + E +
Sbjct: 930 HEMEARIEEEEERSQQLQ---AEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIK 986
Query: 1289 AIKTDLDNVQAKFYEYAQLIAQATAIKTDLDNVQAKVERSMALLKSLGIERERWEATSET 1348
++ D+ ++ + +L + ++ + ++ + K+L + + E+
Sbjct: 987 KMEDDILIMED---QNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISE 1043
Query: 1349 FRSQMA 1354
++
Sbjct: 1044 LEVRLK 1049
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1
PDB: 2tma_A 2w49_A 2w4u_A
Length = 284
Score = 50.0 bits (119), Expect = 3e-06
Identities = 41/285 (14%), Positives = 95/285 (33%), Gaps = 23/285 (8%)
Query: 1016 REKCSELEEQQLHLNVGLGKIAETVEQVEEMQKSLAVKSQELQSKNEAANLKLKEMIKDQ 1075
++ E E + ++ + + +++ K+ + + + A KL+ K
Sbjct: 19 LDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKKA 78
Query: 1076 QEAEKRKVQSQDIQAEIEKQTVEIAQKRVFVMEDLAQVEPAVMDAQQAVKEIKKQQLVEL 1135
+AE E++ ++ ++ L + E A ++++ +K I+ + +
Sbjct: 79 TDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDE 138
Query: 1136 RSMANPPSVVKLALESICLLLGENATDWKAIRAVVMRENFINSIVSNFNTEMITDEVREK 1195
M +K A + + R +V+ E+ + E+
Sbjct: 139 EKMEIQEIQLKEAKHIAEDADRKYE---EVARKLVIIESDLERAEERAELSEGKCAELEE 195
Query: 1196 MHSRYLSNPDYSYEKANRASMACGPMVKWAIAQISYADMLKKVEPLRLELKSLEVQASEN 1255
+N + +K + E+K L + E
Sbjct: 196 EIKTVTNN--------------------LKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEA 235
Query: 1256 KAKGEETKDLITQLEKSIASYKDEYAQLIAQATAIKTDLDNVQAK 1300
+ + E + +T+LEKSI +DE + AI +LD+
Sbjct: 236 ETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALND 280
Score = 47.7 bits (113), Expect = 1e-05
Identities = 50/288 (17%), Positives = 106/288 (36%), Gaps = 12/288 (4%)
Query: 1044 EEMQKSLAVKSQELQSKNEAANLKLKEMIKDQQEAEKRKVQSQDIQAEIEKQTVEIAQKR 1103
+ ++K + Q L+ E A + E D++ AE R Q +D ++K+ +
Sbjct: 2 DAIKKKM----QMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDEL 57
Query: 1104 VFVMEDLAQVEPAVMDAQQAVKEIKKQQLVELRSMANPPSVVKLALESICLLLGENATDW 1163
E L + + A++ + + R + + A E + L +
Sbjct: 58 DKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAE 117
Query: 1164 KAIRAVVMRENFINSIVSNFNTEMITDEVREKMHSRYLSNPDYSYEKANRASMACGPMVK 1223
KA I S +M E++ K + D YE+ R + ++
Sbjct: 118 KAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLE 177
Query: 1224 WAIAQI-----SYADMLKKVEPLRLELKSLEVQASENKAKGEETKDLITQLEKSIASYKD 1278
A + A++ ++++ + LKSLE QA + K ++ ++ I L + +
Sbjct: 178 RAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAET 237
Query: 1279 EYAQLIAQATAIKTDLDNVQAKFYEYAQLIAQATAIKTDLDNVQAKVE 1326
T ++ +D+++ E + AI +LD+ +
Sbjct: 238 RAEFAERSVTKLEKSIDDLED---ELYAQKLKYKAISEELDHALNDMT 282
Score = 39.6 bits (92), Expect = 0.005
Identities = 19/120 (15%), Positives = 50/120 (41%)
Query: 1012 VKLYREKCSELEEQQLHLNVGLGKIAETVEQVEEMQKSLAVKSQELQSKNEAANLKLKEM 1071
++L+ E+ +E+ L + + ++ E K + ++Q+ + K E ++LKE
Sbjct: 92 IQLFEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEA 151
Query: 1072 IKDQQEAEKRKVQSQDIQAEIEKQTVEIAQKRVFVMEDLAQVEPAVMDAQQAVKEIKKQQ 1131
++A+++ + IE ++ A++E + +K ++ Q
Sbjct: 152 KHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQA 211
Score = 38.9 bits (90), Expect = 0.010
Identities = 22/125 (17%), Positives = 50/125 (40%), Gaps = 4/125 (3%)
Query: 1236 KKVEPLRLELKSLEVQASENKAKGEETKDLITQLEKSIASYKDEYAQLIAQATAIKTDLD 1295
KK++ L+L+ ++ +A E +A + +D QLE + S + + + L
Sbjct: 6 KKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALK 65
Query: 1296 NVQAKF----YEYAQLIAQATAIKTDLDNVQAKVERSMALLKSLGIERERWEATSETFRS 1351
+ Q K + A ++ + + +++R+ L + + E E ++
Sbjct: 66 DAQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAADESER 125
Query: 1352 QMATI 1356
M I
Sbjct: 126 GMKVI 130
Score = 35.8 bits (82), Expect = 0.11
Identities = 17/112 (15%), Positives = 41/112 (36%)
Query: 1016 REKCSELEEQQLHLNVGLGKIAETVEQVEEMQKSLAVKSQELQSKNEAANLKLKEMIKDQ 1075
EE+ ++ E ++ V KSL ++++ K + ++K +
Sbjct: 173 ESDLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKL 232
Query: 1076 QEAEKRKVQSQDIQAEIEKQTVEIAQKRVFVMEDLAQVEPAVMDAQQAVKEI 1127
+EAE R ++ ++EK ++ + + + A + I
Sbjct: 233 KEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDMTSI 284
Score = 33.9 bits (77), Expect = 0.41
Identities = 11/126 (8%), Positives = 38/126 (30%), Gaps = 4/126 (3%)
Query: 1233 DMLKKVEPLRLELKSLEVQASENKAKGEETKDLITQLEKSIASYKDEYAQLIAQATAIKT 1292
+ L + + + K+ E ++ + + + + + E + Y + + +
Sbjct: 17 NALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEK 76
Query: 1293 DLDNVQAKFY----EYAQLIAQATAIKTDLDNVQAKVERSMALLKSLGIERERWEATSET 1348
+ +A + + L K+E + + E+ ++
Sbjct: 77 KATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQK 136
Query: 1349 FRSQMA 1354
+M
Sbjct: 137 DEEKME 142
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane
protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Length = 602
Score = 47.4 bits (111), Expect = 4e-05
Identities = 42/334 (12%), Positives = 94/334 (28%), Gaps = 19/334 (5%)
Query: 1016 REKCSELEEQQLHLNVGLGKIAETVEQVEEMQKSLAVKSQELQSKNEAANLKLK-EMIKD 1074
R + E++Q K A+ + + E + L + EL+ AA L + +
Sbjct: 158 RSLIEQAEKRQKDAQNADKKAADMLAEYERRKGILDTRLSELEKNGGAALAVLDAQQARL 217
Query: 1075 QQEAEKRKVQSQDIQAEIEKQTVEIAQKRVFVMEDLAQVEPAVMDAQQAVKEIKKQQLVE 1134
+ + + + ++ V E L A+ A+Q + + K +
Sbjct: 218 LGQQTRNDRAISEARNKLSS-----------VTESLNTARNALTRAEQQLTQQKNTPDGK 266
Query: 1135 LRSMANPPSVVKLALESICLLLGENATDWKAIRAVVMRENFINSIVSNFNTEMITDEVRE 1194
+SI + I + +N N +++ +
Sbjct: 267 TIVSPEKFPGRSSTNDSIVVSGDPRFAGTIKITTSAVIDNRANL------NYLLSHSGLD 320
Query: 1195 KMHSRYLSNPDYSYEKANRASMAC-GPMVKWAIAQISYADMLKKVEPLRLELKSLEVQAS 1253
+ E + +W + D K+ + S S
Sbjct: 321 YKRNILNDRNPVVTEDVEGDKKIYNAEVAEWDKLRQRLLDARNKITSAESAVNSARNNLS 380
Query: 1254 ENKAKGEETKDLITQLEKSIASYKDEYAQLIAQATAIKTDLDNVQAKFYEYAQLIAQATA 1313
+ + D + L K + +++ + + + K D ++A +
Sbjct: 381 ARTNEQKHANDALNALLKEKENIRNQLSGINQKIAEEKRKQDELKATKDAINFTTEFLKS 440
Query: 1314 IKTDLDNVQAKVERSMALLKSLGIERERWEATSE 1347
+ ++ R MA R EA
Sbjct: 441 VSEKYGAKAEQLAREMAGQAKGKKIRNVEEALKT 474
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop,
rossman fold, AAA+, photosynthesis, metal transport;
2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB:
2x31_G
Length = 350
Score = 45.9 bits (109), Expect = 8e-05
Identities = 37/175 (21%), Positives = 57/175 (32%), Gaps = 39/175 (22%)
Query: 419 LVLCGPPGSGKTMTLLSALRA-LPDMEVVSLNFSSATTPELLLKTFDHYCE--------Y 469
+++ G G+GK+ + AL A LP++E V S+ E++
Sbjct: 48 VLVFGDRGTGKST-AVRALAALLPEIEAVEGCPVSSPNVEMIPDWATVLSTNVIRKPTPV 106
Query: 470 RKTPNGV----------ILSPIQLGKWL------------VLFCDEINLPDMDKYATQRV 507
P GV I I G+ L+ DE NL + +
Sbjct: 107 VDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLE------DHI 160
Query: 508 ISFLRQLIEQRGFYRPADKQWVSLE-RIQCVGACNPPTDPGRKPLSHRFLRHVPV 561
+ L + + D + R VG+ NP R L RF V V
Sbjct: 161 VDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLDRFGLSVEV 215
Score = 34.4 bits (79), Expect = 0.27
Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 3/63 (4%)
Query: 44 HGLMMVGPSGSGKST---AWKVLLKALERYEGVEGVAHIIDPKAISKEALYGVLDPNTRE 100
G+++ G G+GKST A LL +E EG + ++ L +
Sbjct: 46 GGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPDWATVLSTNVIRKPTP 105
Query: 101 WTD 103
D
Sbjct: 106 VVD 108
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 46.3 bits (110), Expect = 1e-04
Identities = 22/123 (17%), Positives = 49/123 (39%), Gaps = 4/123 (3%)
Query: 1013 KLYREKCSELEEQQLHLNVGLGKIAETVEQVEEMQKSLAVKSQELQSKNEAANLKLKEMI 1072
K+ ++ + L + ++ +++ + KSL K L+ KL+ +
Sbjct: 910 KIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDV 969
Query: 1073 KD----QQEAEKRKVQSQDIQAEIEKQTVEIAQKRVFVMEDLAQVEPAVMDAQQAVKEIK 1128
+ ++EA+ + +Q EI K E+ Q + + + +Q V E+K
Sbjct: 970 ERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELK 1029
Query: 1129 KQQ 1131
+Q
Sbjct: 1030 EQN 1032
Score = 37.4 bits (87), Expect = 0.053
Identities = 19/148 (12%), Positives = 61/148 (41%), Gaps = 21/148 (14%)
Query: 1008 INHFVKLYREKCSELEEQQLHLNVGLGKIAETVEQVEEMQKSLAVKSQELQS------KN 1061
+ + KL+ +++ + Q ++ + +E++ ++ + + ++++L+S +
Sbjct: 916 VERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMS 975
Query: 1062 EAANLKLKEMIKDQQE-------------AEKRKVQSQ--DIQAEIEKQTVEIAQKRVFV 1106
E + QE EK+ ++ + E E+ E+ ++ +
Sbjct: 976 EEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLL 1035
Query: 1107 MEDLAQVEPAVMDAQQAVKEIKKQQLVE 1134
+ ++ + D + + E +++LVE
Sbjct: 1036 KTEKEELNRRIHDQAKEITETMEKKLVE 1063
Score = 30.8 bits (70), Expect = 4.9
Identities = 18/122 (14%), Positives = 46/122 (37%), Gaps = 3/122 (2%)
Query: 1232 ADMLKKVEPLRLELKSLEVQASENKAKGEETKDLITQLEKSIASYKDEYAQLIAQATAIK 1291
++ +L+S + ++ + + + + L++ IA + E Q + I+
Sbjct: 952 NNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIE 1011
Query: 1292 TDLDNVQAKFYEYAQLIAQATAIKTDLDNVQAKVERSMALLKSLGIERERWEATSETFRS 1351
D + E QL+++ T L + ++ R + E + ET +
Sbjct: 1012 EWADKYKH---ETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQL 1068
Query: 1352 QM 1353
++
Sbjct: 1069 EL 1070
Score = 30.1 bits (68), Expect = 7.8
Identities = 10/80 (12%), Positives = 28/80 (35%), Gaps = 14/80 (17%)
Query: 1016 REKCSELEEQQLHLNVGLGKIAETVEQVEEMQKSLAVKSQELQSKNEAANLKLKEMIKDQ 1075
+ + +EE + + V +++E L + +EL + ++ E ++ +
Sbjct: 1004 QTEKKTIEEWADKYK---HETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKK 1060
Query: 1076 QEAE-----------KRKVQ 1084
E + + Q
Sbjct: 1061 LVEETKQLELDLNDERLRYQ 1080
Score = 30.1 bits (68), Expect = 8.6
Identities = 17/128 (13%), Positives = 45/128 (35%), Gaps = 5/128 (3%)
Query: 1009 NHFVKLYREKCSELEEQQLHLNVGLGKIAETVEQVEEMQKSLAVKSQELQSKN-EAANLK 1067
N + + RE S + ++ + + T++ + +Q + + K +
Sbjct: 856 NKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARS 915
Query: 1068 LKEMIKDQQEAEKRKVQSQDIQAEIEKQTVEIAQKR----VFVMEDLAQVEPAVMDAQQA 1123
++ K E + +Q Q E K+ + +K + + ++ V + +
Sbjct: 916 VERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMS 975
Query: 1124 VKEIKKQQ 1131
+E K
Sbjct: 976 EEEAKNAT 983
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex,
cytoplasm, ribonucleoprotein, structural protein; 3.50A
{Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Length = 861
Score = 44.4 bits (104), Expect = 3e-04
Identities = 33/211 (15%), Positives = 68/211 (32%), Gaps = 14/211 (6%)
Query: 930 YQVAKEFTSKIDLDGPQNW-KAPDFFPSVC--------SLVSTTPSHRDSVINACVYVHQ 980
Y E ++ D PDF C V++ D N+ +
Sbjct: 543 YNWHFELKNRNDPAEAAKLFSVPDFVGDACKAIASRVRGAVASVTFD-DFHKNSARIIRM 601
Query: 981 TLHKANARLSKRGSRTMAITPRHYLDFINHFVKLYREKCSELEEQQLHLNVGLGKIAETV 1040
+ T+ R F + + + +E L + +
Sbjct: 602 AVFGFEMSEDTGPDGTLLPKARDQAVFPQNGLVVSSVDVQSVEPVDQRTRDALQRSVQLA 661
Query: 1041 EQVEEMQKSLAVKSQELQSKNEAANLKLKEMIKDQQEAEKRKVQSQDIQAEIEKQTVEIA 1100
++ + A K + + + EA ++ I DQ EAEK + + +++A
Sbjct: 662 IEITTNSQEAAAKHEAQRLEQEARGRLERQKILDQSEAEKARKELLELEAMSMAVESTGN 721
Query: 1101 QKRVFVMEDLAQVEPAVMDAQQAVKEIKKQQ 1131
K E ++ E A ++ + +V + K +
Sbjct: 722 AKA----EAESRAEAARIEGEGSVLQAKLKA 748
Score = 36.3 bits (83), Expect = 0.10
Identities = 23/126 (18%), Positives = 52/126 (41%), Gaps = 13/126 (10%)
Query: 1013 KLYREKCSELEEQQLHLNVGLGKIAETVEQVEEMQKSLAVKSQELQSKNEAANLKLKEMI 1072
+L +E LE Q++ +Q E + + E S + K
Sbjct: 679 RLEQEARGRLERQKIL------------DQSEAEKARKELLELEAMSMAVESTGNAKAEA 726
Query: 1073 KDQQEAEKRKVQSQDIQAEIEKQTVEI-AQKRVFVMEDLAQVEPAVMDAQQAVKEIKKQQ 1131
+ + EA + + + +QA+++ Q + I + + ++ + ++E AQ ++ K QQ
Sbjct: 727 ESRAEAARIEGEGSVLQAKLKAQALAIETEAELERVKKVREMELIYARAQLELEVSKAQQ 786
Query: 1132 LVELRS 1137
L + +
Sbjct: 787 LANVEA 792
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and
beta protein; HET: GSP; 1.90A {Methanocaldococcus
jannaschii} PDB: 2hf8_A*
Length = 226
Score = 41.1 bits (97), Expect = 0.001
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 411 TWLAEHKPLV--LCGPPGSGKTMTLLSALRALPD 442
L +H + G GSGKT+ + + L D
Sbjct: 31 KLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNLKD 64
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding
protein; 2.30A {Archaeoglobus fulgidus}
Length = 221
Score = 41.1 bits (97), Expect = 0.001
Identities = 8/34 (23%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 411 TWLAEHKPLV--LCGPPGSGKTMTLLSALRALPD 442
L E + + G GSGKT+ + + + +
Sbjct: 23 EALRESGTVAVNIMGAIGSGKTLLIERTIERIGN 56
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 516
Score = 42.2 bits (99), Expect = 0.001
Identities = 26/142 (18%), Positives = 43/142 (30%), Gaps = 23/142 (16%)
Query: 417 KPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFS---SATTPELLLKTFDHYCEYRKTP 473
+ +L GPPG GKT + L +++ N S S T +K
Sbjct: 78 RAAMLYGPPGIGKTTAAHLVAQEL-GYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYF 136
Query: 474 NGVILSPIQLGKWLVLFCDEI-NLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLE 532
+ GK V+ DE+ + D+ ++ F R+
Sbjct: 137 KHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT------------------ 178
Query: 533 RIQCVGACNPPTDPGRKPLSHR 554
+ CN P +P
Sbjct: 179 STPLILICNERNLPKMRPFDRV 200
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural
genomics, PSI, protein struc initiative; 3.20A
{Agrobacterium tumefaciens str} SCOP: c.37.1.25
Length = 191
Score = 40.5 bits (94), Expect = 0.002
Identities = 24/108 (22%), Positives = 41/108 (37%), Gaps = 7/108 (6%)
Query: 46 LMMVGPSGSGKSTAWKVLLKALERYEGVEGVAHIIDPKAISKEALYGVLDPNTREWTDGL 105
L++ G GSGKST + L GV V + +G +DP +
Sbjct: 12 LLLSGHPGSGKSTIAEALANLP----GVPKV--HFHSDDLWGYIKHGRIDPWLPQSHQQN 65
Query: 106 FTHILRRIIDNVRGEISKRQWIIFDGDVDPEWVENLNSVLDDNKLLTL 153
I++ D + ++I DG V P+W+ ++ + L
Sbjct: 66 RM-IMQIAADVAGRYAKEGYFVILDGVVRPDWLPAFTALARPLHYIVL 112
Score = 33.5 bits (76), Expect = 0.33
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 760 LLLIGVSGAGKTTLSRFVAFMNGLSVFQIRA 790
LLL G G+GK+T++ +A + G+ +
Sbjct: 12 LLLSGHPGSGKSTIAEALANLPGVPKVHFHS 42
Score = 30.8 bits (69), Expect = 2.3
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 419 LVLCGPPGSGKTMTLLSALRALPDMEVVSLN 449
L+L G PGSGK+ T+ AL LP + V +
Sbjct: 12 LLLSGHPGSGKS-TIAEALANLPGVPKVHFH 41
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization,
acetylation, ATP-binding, nucleotide-binding,
phosphoprotein, transferase; 1.80A {Saccharomyces
cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A
2zzy_A
Length = 186
Score = 39.4 bits (93), Expect = 0.003
Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 5/40 (12%)
Query: 417 KPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFS-SATT 455
+P+V+ GP G+GK+ TLL L A S FS S+TT
Sbjct: 2 RPIVISGPSGTGKS-TLLKKLFAEYP---DSFGFSVSSTT 37
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil
(dimeric, parallel), familial hypertrophic
cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo
sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Length = 129
Score = 37.9 bits (88), Expect = 0.005
Identities = 21/113 (18%), Positives = 49/113 (43%)
Query: 1018 KCSELEEQQLHLNVGLGKIAETVEQVEEMQKSLAVKSQELQSKNEAANLKLKEMIKDQQE 1077
K +E E++ + ++ E +E+ E +K L K L + L+++ + +
Sbjct: 7 KSAEREKEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLAD 66
Query: 1078 AEKRKVQSQDIQAEIEKQTVEIAQKRVFVMEDLAQVEPAVMDAQQAVKEIKKQ 1130
AE+R Q + ++E + E+ ++ E A++ + E+K+
Sbjct: 67 AEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRD 119
Score = 36.0 bits (83), Expect = 0.021
Identities = 18/111 (16%), Positives = 46/111 (41%), Gaps = 3/111 (2%)
Query: 1244 ELKSLEVQASENKAKGEETKDLITQLEKSIASYKDEYAQLIAQATAIKTDLDNVQAKFYE 1303
E+ S++ + + K E+++ +LE+ + S E L Q A + +L + + +
Sbjct: 14 EMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERC-- 71
Query: 1304 YAQLIAQATAIKTDLDNVQAKVERSMALLKSLGIERERWEATSETFRSQMA 1354
QLI ++ + + ++E + L ++ + E + +
Sbjct: 72 -DQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDID 121
Score = 31.8 bits (72), Expect = 0.66
Identities = 17/88 (19%), Positives = 44/88 (50%), Gaps = 4/88 (4%)
Query: 1017 EKCSELEEQQLHLNVGLGKIAETVEQVEEMQKSLAVKSQELQSKNEAANLKLKEM--IKD 1074
EK L +++ L + + + + EE L +L++K + N +L++ +
Sbjct: 41 EKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNA 100
Query: 1075 QQEAEKRKVQSQ--DIQAEIEKQTVEIA 1100
+ A+KRK++ + +++ +I+ + +A
Sbjct: 101 ELTAKKRKLEDECSELKRDIDDLELTLA 128
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 386
Score = 40.0 bits (93), Expect = 0.005
Identities = 25/132 (18%), Positives = 48/132 (36%), Gaps = 18/132 (13%)
Query: 407 SLLYTWLAEHKP--LVLCGPPGSGKTMTLLSALRAL-----PDMEVVSLNFSSATTPELL 459
S+L E KP + + G G+GKT + L L + V +N TP +
Sbjct: 34 SILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRV 93
Query: 460 LKTFDHYCEYRKTPNGVILSPIQL---------GKWLVLFCDEINLPDMDKYATQRVISF 510
L + + G+ ++ + G +V+ DEI+ K ++
Sbjct: 94 LADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEID--AFVKKYNDDILYK 151
Query: 511 LRQLIEQRGFYR 522
L ++ + +
Sbjct: 152 LSRINSEVNKSK 163
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE;
2.33A {Homo sapiens}
Length = 168
Score = 37.8 bits (87), Expect = 0.009
Identities = 18/116 (15%), Positives = 48/116 (41%), Gaps = 6/116 (5%)
Query: 1016 REKCSELEEQQLHLNVGLGKIAETVEQVEEMQKSLAVKSQELQSKNEAANLKLKEMIKDQ 1075
+E+ LE + + ++ +E + + +LQ++ + ++K + +
Sbjct: 54 QERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNL 113
Query: 1076 QEAEKRKVQSQDIQAEIEKQTVEIAQKRVFVMEDLAQVEPAVMDAQQAVKEIKKQQ 1131
++ E + ++QD+ EK+ + + ++ L Q +Q V E K +
Sbjct: 114 EKVEGERKEAQDMLNHSEKEKNNLEIDLNYKLKSLQQ------RLEQEVNEHKVTK 163
Score = 34.3 bits (78), Expect = 0.16
Identities = 17/103 (16%), Positives = 35/103 (33%)
Query: 1232 ADMLKKVEPLRLELKSLEVQASENKAKGEETKDLITQLEKSIASYKDEYAQLIAQATAIK 1291
+ + K++E L++ A + E I+QLE ++ L +
Sbjct: 9 SQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTD 68
Query: 1292 TDLDNVQAKFYEYAQLIAQATAIKTDLDNVQAKVERSMALLKS 1334
D +QA + + + DL ++ + LK
Sbjct: 69 KDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKH 111
Score = 33.2 bits (75), Expect = 0.40
Identities = 26/131 (19%), Positives = 56/131 (42%), Gaps = 14/131 (10%)
Query: 1014 LYREKCSELEEQQLHLNVGLGKIAETVEQVEEMQ-------KSLAVKSQELQSKNEAANL 1066
L EK S+L++Q N L ++T ++ + L ++ELQ +N
Sbjct: 3 LANEKLSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILEN 62
Query: 1067 KLKEMIKD------QQEAEKR-KVQSQDIQAEIEKQTVEIAQKRVFVMEDLAQVEPAVMD 1119
+ KD EAE+R + ++ +++ + + ++ + +L +VE +
Sbjct: 63 SKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKE 122
Query: 1120 AQQAVKEIKKQ 1130
AQ + +K+
Sbjct: 123 AQDMLNHSEKE 133
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like
domain, protein binding; 1.31A {Homo sapiens} SCOP:
c.37.1.1
Length = 180
Score = 37.8 bits (89), Expect = 0.010
Identities = 12/42 (28%), Positives = 16/42 (38%), Gaps = 7/42 (16%)
Query: 416 HKPLVLCGPPGSGKTMTLLSALRAL-PDMEVVSLNFS-SATT 455
K LVL G G G+ + + L PD + TT
Sbjct: 5 RKTLVLLGAHGVGRR-HIKNTLITKHPDR----FAYPIPHTT 41
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing
cluster, hydrophobic core, contractIle protein; 1.80A
{Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Length = 155
Score = 37.3 bits (86), Expect = 0.014
Identities = 18/114 (15%), Positives = 46/114 (40%)
Query: 1017 EKCSELEEQQLHLNVGLGKIAETVEQVEEMQKSLAVKSQELQSKNEAANLKLKEMIKDQQ 1076
E+ E + L L + ++ +E + + K + + + + + KLKE +
Sbjct: 35 ERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAE 94
Query: 1077 EAEKRKVQSQDIQAEIEKQTVEIAQKRVFVMEDLAQVEPAVMDAQQAVKEIKKQ 1130
AE+ + + ++E + K + E++ Q+E V + ++ +
Sbjct: 95 FAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLENE 148
Score = 33.4 bits (76), Expect = 0.24
Identities = 19/115 (16%), Positives = 51/115 (44%)
Query: 1016 REKCSELEEQQLHLNVGLGKIAETVEQVEEMQKSLAVKSQELQSKNEAANLKLKEMIKDQ 1075
+K EL + HL + ++ + +E+ EE + KS EL+ + + LK +
Sbjct: 6 EDKVEELLSKNYHLENEVARLKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQA 65
Query: 1076 QEAEKRKVQSQDIQAEIEKQTVEIAQKRVFVMEDLAQVEPAVMDAQQAVKEIKKQ 1130
++ +++ + ++ + + E + F + ++E ++ D + + K +
Sbjct: 66 EKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLK 120
Score = 31.5 bits (71), Expect = 1.0
Identities = 17/83 (20%), Positives = 35/83 (42%)
Query: 1048 KSLAVKSQELQSKNEAANLKLKEMIKDQQEAEKRKVQSQDIQAEIEKQTVEIAQKRVFVM 1107
K L K +EL SKN ++ + K + AE+R S+ AE+E++ + +
Sbjct: 3 KQLEDKVEELLSKNYHLENEVARLKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLE 62
Query: 1108 EDLAQVEPAVMDAQQAVKEIKKQ 1130
+ ++ +K + +
Sbjct: 63 AQAEKYSQKEDKYEEEIKVLSDK 85
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus
musculus} SCOP: c.37.1.1
Length = 198
Score = 37.5 bits (88), Expect = 0.016
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
Query: 417 KPLVLCGPPGSGKTMTLLSALRA-LPDMEVVSLNFSSATT 455
+P+VL GP G+GK+ TLL L + S+ S TT
Sbjct: 5 RPVVLSGPSGAGKS-TLLKKLFQEHSSIFGFSV---SHTT 40
Score = 30.5 bits (70), Expect = 2.7
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 7/37 (18%)
Query: 43 NHGLMMV--GPSGSGKSTAWKVLLKAL-ERYEGVEGV 76
+V GPSG+GKST LLK L + + + G
Sbjct: 2 AGPRPVVLSGPSGAGKST----LLKKLFQEHSSIFGF 34
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA
replication initation factor, cell cycle control factor;
HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11
c.37.1.20
Length = 389
Score = 38.6 bits (89), Expect = 0.017
Identities = 12/60 (20%), Positives = 18/60 (30%), Gaps = 3/60 (5%)
Query: 419 LVLCGPPGSGKTMT---LLSALRALPDMEVVSLNFSSATTPELLLKTFDHYCEYRKTPNG 475
L G PG+GKT+T L + V +N ++ G
Sbjct: 47 ATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRG 106
Score = 30.1 bits (67), Expect = 7.2
Identities = 19/124 (15%), Positives = 35/124 (28%), Gaps = 23/124 (18%)
Query: 739 FDEVLDHVLRIDRIFRQPQGHLLLIGVSGAGKTTLSRFV------------AFMNGLSVF 786
++ + R L+G G GKT R + ++NG
Sbjct: 26 LQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYR 85
Query: 787 -----------QIRAHNKYTGADFDEDLRTVLRRSGCKNEKIAFLLDESNVLESGFLERM 835
+ G DE L ++ ++ + +LD++ L L
Sbjct: 86 NFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTF 145
Query: 836 NTLL 839
L
Sbjct: 146 IRLG 149
>1bg1_A Protein (transcription factor STAT3B); protein-DNA complex, cytokine
activation, complex (transcription factor/DNA),
transcription/DNA complex; HET: DNA PTR; 2.25A {Mus
musculus} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 PDB: 3cwg_A
Length = 596
Score = 38.7 bits (89), Expect = 0.017
Identities = 19/120 (15%), Positives = 54/120 (45%), Gaps = 14/120 (11%)
Query: 1017 EKCSELEEQQLHLNVGLGKIAETVEQVEEMQKSLAVKSQELQSKNEAANLKLKEMIKDQQ 1076
EK LE+ + + + + ++ VE +Q + L+S+ + ++++ + Q
Sbjct: 13 EKQQMLEQHLQDVRKRVQDLEQKMKVVENLQDDFDFNYKTLKSQGD-----MQDLNGNNQ 67
Query: 1077 EAEKRKVQSQDIQAEIEKQTVEIAQKRVFVMEDLAQVEPAVMDAQQAVKEIKKQQLVELR 1136
++K+Q ++E+ + Q R ++ +LA + + + K + ++L + +
Sbjct: 68 SVTRQKMQ------QLEQMLTALDQMRRSIVSELAGL---LSAMEYVQKTLTDEELADWK 118
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled
post-transcriptional, gene regulation, chaperone; HET:
EPE; 2.20A {Helicobacter pylori}
Length = 256
Score = 37.8 bits (87), Expect = 0.018
Identities = 20/115 (17%), Positives = 56/115 (48%), Gaps = 5/115 (4%)
Query: 1016 REKCSELEEQQLHLNVGLGKIAETVEQVEEMQKSLAVKSQELQSKNEAANLKLKEMIKDQ 1075
+ LEE++L L + + K +T++ S+ K E++S+ E +L E +
Sbjct: 45 NKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLN-IEEDIAK 103
Query: 1076 QEAEKRKVQSQDIQAEIEKQTVEIAQKRVFVMEDLAQVEPAVMDAQQAVKEIKKQ 1130
+ + + + +++Q EI++++ + + +++ ++E ++ + V+ K
Sbjct: 104 ERSNQANREIENLQNEIKRKSEKQEDLK----KEMLELEKLALELESLVENEVKN 154
Score = 29.3 bits (65), Expect = 8.6
Identities = 14/112 (12%), Positives = 33/112 (29%), Gaps = 18/112 (16%)
Query: 1236 KKVEPLRLELKSLEVQASENKAKGEETKDLITQLEKSIASYKDEYAQLIAQATAIKTDLD 1295
++ L +E+ L+ + + E + + + + L + A+K +
Sbjct: 5 THLKQL-IEISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVS 63
Query: 1296 NVQAKFYEYAQLIAQATAIKTDLDNVQAKVERSMALLKSLGIERERWEATSE 1347
+ L + AK+ + + ERE E
Sbjct: 64 K-----------------NEQTLQDTNAKIASIQKKMSEIKSERELRSLNIE 98
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 36.9 bits (84), Expect = 0.018
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
Query: 1263 KDLITQLEKSIASYKDEYAQLIAQATAIKTDLD 1295
K + +L+ S+ Y D+ A A AIK ++
Sbjct: 19 KQALKKLQASLKLYADDS----APALAIKATME 47
Score = 35.7 bits (81), Expect = 0.040
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 15/34 (44%)
Query: 219 DSSLLITVDATGK--APDDVLSPALTLQQDVASI 250
+SL K A D +PAL ++ A++
Sbjct: 26 QASL--------KLYADDS--APALAIK---ATM 46
Score = 32.6 bits (73), Expect = 0.53
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 12/37 (32%)
Query: 1128 KKQQLVELRS---MANPPSVVKLALESICLLLGENAT 1161
+KQ L +L++ + S LA+ AT
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAI---------KAT 45
Score = 32.2 bits (72), Expect = 0.58
Identities = 13/36 (36%), Positives = 15/36 (41%), Gaps = 7/36 (19%)
Query: 1291 KTDLDNVQAKFYEYAQLIAQATAIKTDLDNVQAKVE 1326
K L +QA YA A A AIK A +E
Sbjct: 19 KQALKKLQASLKLYADDSAPALAIK-------ATME 47
Score = 30.7 bits (68), Expect = 2.0
Identities = 8/46 (17%), Positives = 14/46 (30%), Gaps = 19/46 (41%)
Query: 931 QVAKEFTSKIDLDGPQNWKAPDFFPSVCSLVSTTPSHRDSVINACV 976
Q K+ + + L A D P++ I A +
Sbjct: 20 QALKKLQASLKL------YADDSAPAL-------------AIKATM 46
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 38.9 bits (91), Expect = 0.018
Identities = 13/101 (12%), Positives = 35/101 (34%), Gaps = 2/101 (1%)
Query: 1013 KLYREKCSELEEQQLHLNVGLGKIAETVEQVEEMQKSLAVKSQELQSKNEAANL-KLKEM 1071
+Y +E + + L + + + ++ + ++ N + E+
Sbjct: 906 SVYLGS-NETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTELNYNGVPEL 964
Query: 1072 IKDQQEAEKRKVQSQDIQAEIEKQTVEIAQKRVFVMEDLAQ 1112
+ + ++ AE K T+ +R+ +EDL
Sbjct: 965 TERKDTFFAQQWTGVKSSAETYKNTLLAELERLQKIEDLHH 1005
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural
genomics, structural genomics of pathogenic protozoa
consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Length = 204
Score = 37.5 bits (88), Expect = 0.018
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
Query: 417 KPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFS-SATT 455
PLV+CGP G GK TL+ + + FS S TT
Sbjct: 13 PPLVVCGPSGVGKG-TLIKKVLSEFPS---RFRFSISCTT 48
Score = 31.4 bits (72), Expect = 1.5
Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 41 NLNHGLMMV--GPSGSGKSTAWKVLLK 65
++ +V GPSG GK T K +L
Sbjct: 8 HMARIPPLVVCGPSGVGKGTLIKKVLS 34
>1u2m_A Histone-like protein HLP-1; coiled coil, chaperone; 2.30A
{Escherichia coli} SCOP: f.48.1.1 PDB: 1sg2_A
Length = 143
Score = 36.4 bits (84), Expect = 0.020
Identities = 19/104 (18%), Positives = 40/104 (38%), Gaps = 10/104 (9%)
Query: 1033 LGKIAETVEQVEEMQKSLAVKSQELQSKNEAANLKLKEMIKDQQEAEKRKVQSQDIQAEI 1092
++A+ ++ ++ ELQ K+K++ + +++ K ++ ++
Sbjct: 15 FQQVAQKTGVSNTLENEFKGRASELQRMETDLQAKMKKLQSMKAGSDRTK-----LEKDV 69
Query: 1093 EKQTVEIAQKRVFVMEDLAQ-----VEPAVMDAQQAVKEIKKQQ 1131
Q AQK +D A+ V Q AVK + Q
Sbjct: 70 MAQRQTFAQKAQAFEQDRARRSNEERGKLVTRIQTAVKSVANSQ 113
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom
consortium, transferase; HET: EPE; 2.18A {Plasmodium
falciparum}
Length = 218
Score = 37.5 bits (88), Expect = 0.020
Identities = 17/40 (42%), Positives = 19/40 (47%), Gaps = 5/40 (12%)
Query: 417 KPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFS-SATT 455
PLV+CGP G GK TL+ L FS S TT
Sbjct: 24 YPLVICGPSGVGKG-TLIKKLLNEFPN---YFYFSVSCTT 59
Score = 32.9 bits (76), Expect = 0.59
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 40 SNLNHGLMMV--GPSGSGKSTAWKVLLK 65
++N+ +V GPSG GK T K LL
Sbjct: 18 GSMNNIYPLVICGPSGVGKGTLIKKLLN 45
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine
exchange factor, coiled-coil, endocytosis/exocytosis
complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Length = 154
Score = 36.3 bits (83), Expect = 0.029
Identities = 22/132 (16%), Positives = 53/132 (40%), Gaps = 10/132 (7%)
Query: 1017 EKCSELEEQQLHLNVGLGKIAETVEQVEEMQKSLAVKSQELQSKNEAANLKLKEMIKDQQ 1076
+K S LEEQ + +E ++++ +EL +++ +++ K+ +
Sbjct: 13 DKQSHLEEQLNKSLKTIASQKAAIENYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENE 72
Query: 1077 EAEKRKVQSQDIQAEIEKQT----------VEIAQKRVFVMEDLAQVEPAVMDAQQAVKE 1126
K + ++ + E+E T V A+K + +E L + + + + +
Sbjct: 73 LRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREKDTLLD 132
Query: 1127 IKKQQLVELRSM 1138
QL L+ +
Sbjct: 133 TLTLQLKNLKKV 144
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics
consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A
{Homo sapiens}
Length = 197
Score = 36.8 bits (86), Expect = 0.030
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 5/41 (12%)
Query: 416 HKPLVLCGPPGSGKTMTLLSALRAL-PDMEVVSLNFSSATT 455
K LVL G G G++ + +AL + P+ V + TT
Sbjct: 19 RKTLVLIGASGVGRS-HIKNALLSQNPEKFVYPV---PYTT 55
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins
(A/B), protein binding, transferase, phosphotransferase;
HET: ADP; 1.76A {Homo sapiens} PDB: 3iik_A 3iil_A*
3iim_A* 1rkb_A
Length = 180
Score = 36.5 bits (84), Expect = 0.034
Identities = 17/78 (21%), Positives = 31/78 (39%), Gaps = 2/78 (2%)
Query: 760 LLLIGVSGAGKTTLSRFVAFMNGLSVFQIR--AHNKYTGADFDEDLRTVLRRSGCKNEKI 817
+LL G G GKTTL + +A +GL + A + +DE+ + +++
Sbjct: 14 ILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDGYDEEYDCPILDEDRVVDEL 73
Query: 818 AFLLDESNVLESGFLERM 835
+ E V+
Sbjct: 74 DNQMREGGVIVDYHGCDF 91
Score = 29.6 bits (66), Expect = 6.1
Identities = 10/31 (32%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 419 LVLCGPPGSGKTMTLLSALRALPDMEVVSLN 449
++L G PG GKT TL L + ++ +++
Sbjct: 14 ILLTGTPGVGKT-TLGKELASKSGLKYINVG 43
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein
struct initiative, northeast structural genomics
consortium, NESG, function; 2.40A {Bacillus halodurans}
SCOP: c.37.1.25
Length = 189
Score = 36.1 bits (83), Expect = 0.044
Identities = 21/96 (21%), Positives = 35/96 (36%), Gaps = 10/96 (10%)
Query: 46 LMMVGPSGSGKSTAWKVLLKALERYEGVEGVAHIIDPKAISKEALYGVLDPNTREWTDGL 105
++ GP+G GKST K L L + I+ I+ + G P + L
Sbjct: 5 YIITGPAGVGKSTTCKRLAAQL-------DNSAYIEGDIINHMVVGGYRPPWESDELLAL 57
Query: 106 FTHILRRIIDNVRGEISKRQWIIFDGDVDPEWVENL 141
+ I D + + ++ D P+ E L
Sbjct: 58 ---TWKNITDLTVNFLLAQNDVVLDYIAFPDEAEAL 90
Score = 31.4 bits (71), Expect = 1.7
Identities = 26/159 (16%), Positives = 52/159 (32%), Gaps = 13/159 (8%)
Query: 760 LLLIGVSGAGKTTLSRFVAFMNGLSVF----QIRAHNKYTGADFDEDLRTV-LRRSGCKN 814
++ G +G GK+T + +A S + I E + L +
Sbjct: 5 YIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVGGYRPPWESDELLALTWKNITD 64
Query: 815 EKIAFLLDESNVLESGFL--ERMNTLLANGEIPGLFEGDEYTTLMTQCKEGAQR------ 866
+ FLL +++V+ + L + + L T +E +R
Sbjct: 65 LTVNFLLAQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKK 124
Query: 867 EGLMLDSNEELYKWFTQQVMKNLHVVFTMNPSSEGLKDR 905
+ M + EL + F + + + T + L D
Sbjct: 125 DEQMGERCLELVEEFESKGIDERYFYNTSHLQPTNLNDI 163
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate
hydrolases fold, S genomics, joint center for structural
genomics, JCSG; HET: MSE; 1.70A {Chloroflexus
aurantiacus}
Length = 193
Score = 36.1 bits (83), Expect = 0.045
Identities = 16/86 (18%), Positives = 35/86 (40%), Gaps = 9/86 (10%)
Query: 46 LMMVGPSGSGKSTAWKVLLKALERYEGVEGVAHIIDPKAISKEALYGVLDPNTREWTDGL 105
+++ G +GK+T L +AL + ++ A KE ++ L + REW+ +
Sbjct: 8 IIVTGHPATGKTT----LSQALATGLRLP----LLSKDAF-KEVMFDGLGWSDREWSRRV 58
Query: 106 FTHILRRIIDNVRGEISKRQWIIFDG 131
+ + + Q +I +
Sbjct: 59 GATAIMMLYHTAATILQSGQSLIMES 84
Score = 31.8 bits (72), Expect = 1.1
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 760 LLLIGVSGAGKTTLSRFVA 778
+++ G GKTTLS+ +A
Sbjct: 8 IIVTGHPATGKTTLSQALA 26
Score = 31.8 bits (72), Expect = 1.3
Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 419 LVLCGPPGSGKTMTLLSALRALPDMEVVS 447
+++ G P +GKT TL AL + ++S
Sbjct: 8 IIVTGHPATGKT-TLSQALATGLRLPLLS 35
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A
{Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A*
1zny_A* 1znz_A* 1s4q_A 1z8f_A
Length = 207
Score = 35.6 bits (83), Expect = 0.062
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 6/40 (15%)
Query: 417 KPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFS-SATT 455
+ +VL GP GK+ T++ LR + +L+FS SATT
Sbjct: 21 RVVVLSGPSAVGKS-TVVRCLRE----RIPNLHFSVSATT 55
Score = 29.8 bits (68), Expect = 5.6
Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 44 HGLMMV--GPSGSGKSTAWKVLLKALERYE 71
G ++V GPS GKST + L + +
Sbjct: 19 VGRVVVLSGPSAVGKSTVVRCLRERIPNLH 48
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural
genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Length = 263
Score = 36.2 bits (84), Expect = 0.068
Identities = 20/91 (21%), Positives = 37/91 (40%), Gaps = 19/91 (20%)
Query: 762 LIGVSGAGKTTLSRFVA---------FMNGLSVFQIRAHNKYTGADFD---------EDL 803
++G +G+GKTTL R ++ F+NG+ V +IR + +Y+ + + +
Sbjct: 35 ILGPNGSGKTTLLRAISGLLPYSGNIFINGMEVRKIRNYIRYSTNLPEAYEIGVTVNDIV 94
Query: 804 RTVLRRSGCKNEKIAFLLDESNVLESGFLER 834
G + +L L L R
Sbjct: 95 YLYEELKGLDRDLFLEMLKALK-LGEEILRR 124
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein,
calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides}
PDB: 3syk_A 3zuh_A*
Length = 309
Score = 36.3 bits (83), Expect = 0.080
Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 14/84 (16%)
Query: 730 EELDVQLVLFDEVLDHV------LRIDRIFRQ-------PQGHLLLIGVSGAGKTTLSRF 776
EELD +L+ V D + L ++R ++ P H+ G G GKTT++
Sbjct: 27 EELDRELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALK 86
Query: 777 VA-FMNGLSVFQIRAHNKYTGADF 799
+A ++ L + T D
Sbjct: 87 MAGLLHRLGYVRKGHLVSVTRDDL 110
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function
initiative, EFI, STRU genomics, transferase; 1.60A
{Janibacter SP}
Length = 200
Score = 35.4 bits (81), Expect = 0.081
Identities = 12/24 (50%), Positives = 20/24 (83%)
Query: 755 QPQGHLLLIGVSGAGKTTLSRFVA 778
+P H++++GVSG+GKTT++ VA
Sbjct: 27 EPTRHVVVMGVSGSGKTTIAHGVA 50
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure
initiati YORK structural genomics research consortium,
nysgrc; 2.20A {Sinorhizobium meliloti}
Length = 202
Score = 35.4 bits (81), Expect = 0.082
Identities = 11/38 (28%), Positives = 22/38 (57%)
Query: 754 RQPQGHLLLIGVSGAGKTTLSRFVAFMNGLSVFQIRAH 791
R+ G ++++GVSG+GK+++ +A G + A
Sbjct: 15 RRFPGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGDAL 52
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding
motif, ATP- binding, nucleotide-binding, transferase;
HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB:
3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Length = 260
Score = 35.6 bits (82), Expect = 0.090
Identities = 13/85 (15%), Positives = 30/85 (35%), Gaps = 13/85 (15%)
Query: 46 LMMVGPSGSGKSTAWKVLLKALERYEGVEGVAHIIDPKAISKEALYGVLDPNTREWTDGL 105
+++ G G GKST K L + + I+ + + + ++ +
Sbjct: 7 IILTGLPGVGKST----FSKNLAKILSKNNIDVIV----LGSDLIRESFPVWKEKYEE-- 56
Query: 106 FTHILRRIIDNVRGEISKRQWIIFD 130
+++ + K W+I D
Sbjct: 57 ---FIKKSTYRLIDSALKNYWVIVD 78
Score = 29.8 bits (67), Expect = 6.3
Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 6/36 (16%)
Query: 419 LVLCGPPGSGKTMTLLSALRAL-----PDMEVVSLN 449
++L G PG GK+ T L + D+ V+ +
Sbjct: 7 IILTGLPGVGKS-TFSKNLAKILSKNNIDVIVLGSD 41
Score = 29.8 bits (67), Expect = 6.6
Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 8/58 (13%)
Query: 760 LLLIGVSGAGKTTLSRFVAFMNG--------LSVFQIRAHNKYTGADFDEDLRTVLRR 809
++L G+ G GK+T S+ +A + L IR ++E ++ R
Sbjct: 7 IILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESFPVWKEKYEEFIKKSTYR 64
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine,
axial stagger, radius, SIDE-chain packing, crystal
packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Length = 147
Score = 34.7 bits (79), Expect = 0.095
Identities = 23/121 (19%), Positives = 56/121 (46%), Gaps = 2/121 (1%)
Query: 1012 VKLYREKCSELEEQQLHLNVGLGKIAETVEQVEEMQKSLAVKSQELQSKNEAANLKLKEM 1071
++L E+ +E+ L + + ++ E K + ++Q+ + K E ++LKE
Sbjct: 5 IQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEA 64
Query: 1072 IKDQQEAEKRKVQSQDIQAEIEKQTVEIAQKRVFVMED-LAQVEPAVMDAQQAVKEIKKQ 1130
++A+ RK + + I + +E A++R + E A++E + +K ++ +
Sbjct: 65 KHIAEDAD-RKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEDK 123
Query: 1131 Q 1131
Sbjct: 124 V 124
Score = 32.4 bits (73), Expect = 0.47
Identities = 15/81 (18%), Positives = 37/81 (45%)
Query: 1050 LAVKSQELQSKNEAANLKLKEMIKDQQEAEKRKVQSQDIQAEIEKQTVEIAQKRVFVMED 1109
+ + Q ++ + + A +L ++ +EAEK +S+ IE + + +K
Sbjct: 1 MNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQ 60
Query: 1110 LAQVEPAVMDAQQAVKEIKKQ 1130
L + + DA + +E+ ++
Sbjct: 61 LKEAKHIAEDADRKYEEVARK 81
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD,
CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A*
1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Length = 806
Score = 35.9 bits (83), Expect = 0.11
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Query: 732 LDVQLVLFDEVLDHVLRIDRIFRQ----PQGHLLLIGVSGAGKTTLSRFVAFMNGLSVFQ 787
QL E+++ LR +F+ P +LL G G GKT ++R VA G F
Sbjct: 209 CRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFL 268
Query: 788 IRAH 791
I
Sbjct: 269 INGP 272
Score = 35.5 bits (82), Expect = 0.17
Identities = 52/284 (18%), Positives = 89/284 (31%), Gaps = 65/284 (22%)
Query: 310 SQDVVERYIPRILVYSLLWSFAGDGKLKMRSDFGNFLRSVTTITLPATSSD-----IV-- 362
D VE + L F + + D + + +D IV
Sbjct: 119 IDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAP 178
Query: 363 DFEVNIKNGEWVPWSNKVPQIEVETQKVAASDV--VVPTLDTVRHE---SLLYTWLAEH- 416
D ++ + K E +V DV L ++ L + L +
Sbjct: 179 DTVIHCEGE-----PIKREDEEESLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAI 233
Query: 417 --KP---LVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSS------ATTPELLLKTFDH 465
KP ++L GPPG+GKT + A+ +N + L K F+
Sbjct: 234 GVKPPRGILLYGPPGTGKT-LIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 292
Query: 466 YCEYRKTPNGVILSPIQLGKWLVLFCDEIN--LPDMDKYATQ---RVISFLRQLIEQRGF 520
+ ++F DE++ P +K + R++S L L++
Sbjct: 293 AEKNAPA---------------IIFIDELDAIAPKREKTHGEVERRIVSQLLTLMD---- 333
Query: 521 YRPADKQWVSLERIQCVGACNPPT--DPG-RKPLSHRFLRHVPV 561
+ + A N P DP R+ RF R V +
Sbjct: 334 ------GLKQRAHVIVMAATNRPNSIDPALRRF--GRFDREVDI 369
Score = 30.9 bits (70), Expect = 4.1
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 6/41 (14%)
Query: 421 LCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTPELLLK 461
GPPG GKT+ +A+ + NF S PELL
Sbjct: 516 FYGPPGCGKTLL----AKAIANE--CQANFISIKGPELLTM 550
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A
{Enterobacteria phage T4} SCOP: c.37.1.1
Length = 181
Score = 34.8 bits (80), Expect = 0.12
Identities = 8/31 (25%), Positives = 13/31 (41%), Gaps = 2/31 (6%)
Query: 419 LVLCGPPGSGKTMTLLSAL-RALPDMEVVSL 448
++ G PGSGK+ T P ++
Sbjct: 5 ILTIGCPGSGKS-TWAREFIAKNPGFYNINR 34
Score = 32.8 bits (75), Expect = 0.50
Identities = 9/21 (42%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Query: 46 LMMVGPSGSGKST-AWKVLLK 65
++ +G GSGKST A + + K
Sbjct: 5 ILTIGCPGSGKSTWAREFIAK 25
Score = 30.5 bits (69), Expect = 2.8
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 760 LLLIGVSGAGKTTLSR 775
+L IG G+GK+T +R
Sbjct: 5 ILTIGCPGSGKSTWAR 20
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur
cluster, adenosine diphosphate, nucleotide-binding; HET:
ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Length = 607
Score = 36.1 bits (84), Expect = 0.12
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Query: 31 EKVLQLYQISNLNHG--LMMVGPSGSGKSTAWKVLLKALER--YEGVEGVAHIIDPKAIS 86
LY++ + G + +VGP+G+GK+TA K+L L E + ++I +
Sbjct: 103 VNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGN 162
Query: 87 KEALY 91
+ Y
Sbjct: 163 ELQNY 167
Score = 33.4 bits (77), Expect = 0.67
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 48 MVGPSGSGKSTAWKVLLKALERYEG 72
+VGP+G GK+T K+L E EG
Sbjct: 387 IVGPNGIGKTTFVKMLAGVEEPTEG 411
Score = 32.3 bits (74), Expect = 1.7
Identities = 9/41 (21%), Positives = 18/41 (43%), Gaps = 4/41 (9%)
Query: 744 DHVLRIDRIFRQPQGH-LLLIGVSGAGKTTLSRFVAFMNGL 783
+ + R+ G + ++G +G GKTT + + G
Sbjct: 103 VNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVK---ILAGQ 140
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide-
binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Length = 207
Score = 34.8 bits (81), Expect = 0.12
Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 5/40 (12%)
Query: 417 KPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFS-SATT 455
+VL GP G GK T+ + P +S S TT
Sbjct: 7 LLIVLSGPSGVGKG-TVRKRIFEDPSTS---YKYSISMTT 42
Score = 29.8 bits (68), Expect = 5.6
Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 43 NHGLMMV--GPSGSGKSTAWKVLLK 65
GL++V GPSG GK T K + +
Sbjct: 4 EKGLLIVLSGPSGVGKGTVRKRIFE 28
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A
{Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Length = 995
Score = 35.8 bits (83), Expect = 0.14
Identities = 12/96 (12%), Positives = 33/96 (34%), Gaps = 1/96 (1%)
Query: 1016 REKCSELEEQQLHLNVGLGKIAETVEQVEEMQKSLAVKSQELQSKNEAANL-KLKEMIKD 1074
+E + + L + + + ++ + ++ N + E+ +
Sbjct: 900 YLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTELNYNGVPELTER 959
Query: 1075 QQEAEKRKVQSQDIQAEIEKQTVEIAQKRVFVMEDL 1110
+ ++ AE K T+ +R+ +EDL
Sbjct: 960 KDTFFAQQWTGVKSSAETYKNTLLAELERLQKIEDL 995
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for
structural genomics of infec diseases, csgid, putative
guanylate kinase; HET: MSE; 2.05A {Listeria
monocytogenes}
Length = 208
Score = 34.8 bits (81), Expect = 0.14
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
Query: 417 KPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFS-SATT 455
+VL GP G GK T+ A+ P+ ++S S TT
Sbjct: 9 LLIVLSGPSGVGKG-TVREAVFKDPETS---FDYSISMTT 44
Score = 29.4 bits (67), Expect = 6.7
Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 43 NHGLMMV--GPSGSGKSTAWKVLLK 65
GL++V GPSG GK T + + K
Sbjct: 6 ERGLLIVLSGPSGVGKGTVREAVFK 30
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A
{Mus musculus} SCOP: a.207.1.1
Length = 340
Score = 35.1 bits (81), Expect = 0.18
Identities = 22/160 (13%), Positives = 51/160 (31%), Gaps = 28/160 (17%)
Query: 1040 VEQVEEMQKSLAVKSQELQSKNEAANLKLKEMIKDQQEAEKRKVQSQDIQAEIEKQTVEI 1099
E E + EL +A+ + + + K + +K Q D++ +++
Sbjct: 184 AELCENDHPEVLKFPDELAHVEKASRVSAENLQKSLDQMKK---QIADVERDVQNFPAAT 240
Query: 1100 AQKRVFVMEDLAQVEPAVMDAQQAVKEIKKQQLVELRSMANPPSVVKLALESICLLLGEN 1159
+K FV ++ V DAQ+ +++ S ++ + + +
Sbjct: 241 DEKDKFV----EKMTSFVKDAQEQYNKLRMMH-----------SNMETLYKELGDYFVFD 285
Query: 1160 ATDWKAIRAVVMRENFINSIVSNFNTEMITDEVREKMHSR 1199
E F + NF + ++ R
Sbjct: 286 PKKLSV-------EEFF-MDLHNFRNMF--LQAVKENQKR 315
>1yvl_A Signal transducer and activator of transcription 1-alpha/beta;
signaling protein; HET: PTR; 3.00A {Homo sapiens}
Length = 683
Score = 35.2 bits (80), Expect = 0.19
Identities = 15/115 (13%), Positives = 53/115 (46%), Gaps = 8/115 (6%)
Query: 1017 EKCSELEEQQLHLNVGLGKIAETVEQVEEMQKSLAVKSQELQSKNEAANLKLKEMIKDQQ 1076
+K EL+ + ++ + I ++ +E++Q K + LQ++ + +
Sbjct: 137 DKQKELDSKVRNVKDKVMCIEHEIKSLEDLQDEYDFKCKTLQNREH------ETNGVAKS 190
Query: 1077 EAEKRKVQSQDIQAEIEKQTVEIAQKRVFVMEDLAQVEPAVMDAQQAVKEIKKQQ 1131
+ ++ ++ + + ++ + E+ K + ++ + A+++ + + E K++Q
Sbjct: 191 DQKQEQLLLKKMYLMLDNKRKEVVHKIIELLNVTELTQNALINDE--LVEWKRRQ 243
>3lj5_A Portal protein, protein GP1; DNA ejection, molecular motor, DNA
packaging podoviridae, virus assembly, tail tube, trunk
domain; 7.50A {Enterobacteria phage P22}
Length = 725
Score = 35.1 bits (79), Expect = 0.21
Identities = 14/92 (15%), Positives = 35/92 (38%), Gaps = 1/92 (1%)
Query: 1041 EQVEEMQKSLAVKSQELQSKNEAANLKLKEMIKDQQEAEKRKVQSQDIQAEIEKQTVEIA 1100
E EE Q + + + ++ A +++ Q E K + Q+ +Q + K +
Sbjct: 585 ETPEEQQWLVEAQQAKQGQQDPAMVQAQGVLLQGQAELAKAQNQTLSLQIDAAKVEAQNQ 644
Query: 1101 QKRVFVMEDLAQVE-PAVMDAQQAVKEIKKQQ 1131
+ E ++ + ++ +K + Q
Sbjct: 645 LNAARIAEIFNNMDLSKQSEFREFLKTVASFQ 676
Score = 30.0 bits (66), Expect = 8.6
Identities = 12/98 (12%), Positives = 36/98 (36%), Gaps = 4/98 (4%)
Query: 1037 AETVEQVEEMQKSLAVKSQELQSKNEAANLKLKEMIKDQQEAEKRKVQSQDIQAEIEKQT 1096
+ VE + + ++ + + L E Q + ++ Q + +
Sbjct: 562 GKGVEMMRDYANKQLIQMGVKKPETPEEQQWLVEAQ--QAKQGQQDPAMVQAQGVLLQGQ 619
Query: 1097 VEIAQKRVFVMEDLAQVEPAVMDAQQAVKEIKKQQLVE 1134
E+A+ + + Q++ A ++AQ + + ++
Sbjct: 620 AELAKAQNQTLS--LQIDAAKVEAQNQLNAARIAEIFN 655
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 34.0 bits (77), Expect = 0.22
Identities = 15/77 (19%), Positives = 26/77 (33%), Gaps = 18/77 (23%)
Query: 1220 PMVKWAIAQISYADMLKKVEPLRLELKSLEVQASENKAKGEETKDL-------ITQLEKS 1272
+ KW Q +K RL+ + E + + + KDL Q+EK+
Sbjct: 86 SIRKWREEQ-------RK----RLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKN 134
Query: 1273 IASYKDEYAQLIAQATA 1289
+ + Q A
Sbjct: 135 KINNRIADKAFYQQPDA 151
Score = 34.0 bits (77), Expect = 0.25
Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Query: 1041 EQVEEMQKSLAVKSQELQSKNEAANLKLKEMIKDQQE-AEKRKVQSQDIQAEIEKQ 1095
EQ + +Q+ A Q E A L+E + Q E EK K+ ++ +Q
Sbjct: 93 EQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQ 148
Score = 33.6 bits (76), Expect = 0.29
Identities = 12/66 (18%), Positives = 31/66 (46%), Gaps = 8/66 (12%)
Query: 1023 EEQQLHLNVGLGKIAETVEQVEEMQKSLAVKS-QELQSKNEAANLKLKEMIKDQQEAEKR 1081
EEQ+ ++ E + M++ K+ ++L+ N+ + ++++ + + A+K
Sbjct: 92 EEQRK-------RLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKA 144
Query: 1082 KVQSQD 1087
Q D
Sbjct: 145 FYQQPD 150
Score = 32.4 bits (73), Expect = 0.65
Identities = 14/83 (16%), Positives = 34/83 (40%), Gaps = 13/83 (15%)
Query: 1054 SQELQSKNEAANLKL-----KEMIKDQQEAEKRKVQSQDIQAEIEKQTVEIAQKRVFVME 1108
+Q + E +++ ++ +++ A K Q +A+ + + E Q++
Sbjct: 75 AQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLE--EWNQRQ----- 127
Query: 1109 DLAQVEPAVMDAQQAVKEIKKQQ 1131
QVE ++ + A K +Q
Sbjct: 128 -SEQVEKNKINNRIADKAFYQQP 149
Score = 32.4 bits (73), Expect = 0.77
Identities = 16/83 (19%), Positives = 34/83 (40%), Gaps = 10/83 (12%)
Query: 1036 IAETVEQVEE---MQKSLAVKSQELQSKNEAANLKLKEMIKDQQEAEKRKV-QSQDIQAE 1091
IA+ +E ++K + + LQ + A+ +++ +++ + + + Q Q Q E
Sbjct: 74 IAQADRLTQEPESIRKWREEQRKRLQELDAASK-VMEQEWREKAKKDLEEWNQRQSEQVE 132
Query: 1092 IEKQTVEIAQKRVFVMEDLAQVE 1114
K IA K Q +
Sbjct: 133 KNKINNRIADK-----AFYQQPD 150
Score = 29.4 bits (65), Expect = 6.7
Identities = 17/78 (21%), Positives = 30/78 (38%), Gaps = 7/78 (8%)
Query: 1229 ISYADMLKKVEP--LRLELKSLEVQASENKAKGEETKDLITQL-EKSIASYKDEYAQLIA 1285
I+ AD L + EP +R K E Q + +K + + EK+ ++ +
Sbjct: 74 IAQADRLTQ-EPESIR---KWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSE 129
Query: 1286 QATAIKTDLDNVQAKFYE 1303
Q K + FY+
Sbjct: 130 QVEKNKINNRIADKAFYQ 147
>1y1u_A Signal transducer and activator of transcription; STAT, DNA-binding,
SH2 domain, transcription REGU signaling protein; 3.21A
{Mus musculus}
Length = 585
Score = 35.2 bits (80), Expect = 0.22
Identities = 15/122 (12%), Positives = 56/122 (45%), Gaps = 6/122 (4%)
Query: 1017 EKCSELEEQQLHLNVGLGKIAETVEQVEEMQKSLAVKSQELQSKNEAANLKLKEMIKDQQ 1076
+K ++ ++ L + ++++++ Q+ ++ QE + +A +L ++ ++
Sbjct: 12 QKHLQINQRFEELRLITQDTENELKKLQQTQEYFIIQYQESL-RIQAQFAQLGQLNPQER 70
Query: 1077 EAEKRKVQSQDIQAE--IEKQTVEIAQKRVFVMEDLAQVEPAVMDAQQAVKEIKKQQLVE 1134
+ + +Q + + E ++++ + Q RV + E + + ++ I +L++
Sbjct: 71 MSRETALQQKQVSLETWLQREAQTLQQYRVELAEKHQKT---LQLLRKQQTIILDDELIQ 127
Query: 1135 LR 1136
+
Sbjct: 128 WK 129
>2v1u_A Cell division control protein 6 homolog; DNA replication,
nucleotide-binding, replication, archaea; HET: ADP;
3.10A {Aeropyrum pernix}
Length = 387
Score = 34.8 bits (79), Expect = 0.24
Identities = 20/118 (16%), Positives = 42/118 (35%), Gaps = 18/118 (15%)
Query: 419 LVLCGPPGSGKTMTLLSALRAL--------PDMEVVSLNFSSATTPELLLKTFDHYCEYR 470
+L G G+GKT LR L ++ + +N TP + R
Sbjct: 47 ALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAIAEAVGVR 106
Query: 471 KTPNGVILSPI---------QLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRG 519
G+ + + +L ++ DEI+ + Q ++ + ++ ++ G
Sbjct: 107 VPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDF-LPKRPGGQDLLYRITRINQELG 163
>2l7b_A Apolipoprotein E, APO-E; lipid transport, atherosclerosis, alzheime
disease; NMR {Homo sapiens}
Length = 307
Score = 34.4 bits (78), Expect = 0.25
Identities = 22/166 (13%), Positives = 47/166 (28%), Gaps = 8/166 (4%)
Query: 978 VHQTLHKANARLSKRGSRTMAITPRHYLDFINHFVKLYREKCSELEEQQLHLNVGLGKIA 1037
L K R M + + + + EL + L K
Sbjct: 97 TRARLSKELQAAQARLGADMEDVCGRLVQYRGEVQAMLGQSTEELRVRLASHLRKLRKRL 156
Query: 1038 ETVEQVEEMQKSLAVKSQELQSKNEAANLKLKEMIKDQQEAEKRKVQ------SQDIQAE 1091
+++QK LAV + E ++E + E + + Q +Q
Sbjct: 157 L--RDADDLQKRLAVYQAGAREGAERGLSAIRERLGPLVEQGRVRAATVGSLAGQPLQER 214
Query: 1092 IEKQTVEIAQKRVFVMEDLAQVEPAVMDAQQAVKEIKKQQLVELRS 1137
+ + + + V + V+ ++Q ++R
Sbjct: 215 AQAWGERLRARMEEMGSRTRDRLDEVKEQVAEVRAKLEEQAQQIRL 260
Score = 31.7 bits (71), Expect = 1.7
Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 1037 AETVEQVEEMQKSLAVKSQELQSKNEAANLKLKEMIKDQQEAEKRKVQS--QDIQAEIEK 1094
E EQV E++ L ++Q+++ + EAA +LK + E +R+ + +QA
Sbjct: 238 DEVKEQVAEVRAKLEEQAQQIRLQAEAAQARLKSRFEPLAEDMQRQWAGQVEKVQAAEGT 297
Query: 1095 QTVEI 1099
+
Sbjct: 298 SAAPV 302
>1ux5_A BNI1 protein; structural protein, FH2 actin cytoskeleton; 2.5A
{Saccharomyces cerevisiae} SCOP: a.207.1.1 PDB: 1y64_B*
1ux4_A
Length = 411
Score = 34.9 bits (80), Expect = 0.25
Identities = 15/123 (12%), Positives = 48/123 (39%), Gaps = 14/123 (11%)
Query: 1040 VEQVEEMQKSLAVKSQELQSKNEAANLKLKEMIKDQQEAEKRKVQSQDIQAEIEKQTVEI 1099
+ V S EL+ + + +++++ D ++ + +++ +E +
Sbjct: 265 EKIVRLNYPSFNDFLSELEPVLDVVKVSIEQLVNDCKDFSQS---IVNVERSVEIGNLSD 321
Query: 1100 AQKRVFVMEDLAQVEPAVMDAQQAVKEIKKQQLVELRSMANPPSVVKLALESICLLLGEN 1159
+ K + + L + P + +A++ ++ + + + ES+ GE+
Sbjct: 322 SSKFHPLDKVLIKTLPVLPEARKKGDLLEDEV-----------KLTIMEFESLMHTYGED 370
Query: 1160 ATD 1162
+ D
Sbjct: 371 SGD 373
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics,
NPPSFA, nationa on protein structural and functional
analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Length = 425
Score = 34.8 bits (81), Expect = 0.25
Identities = 12/90 (13%), Positives = 50/90 (55%)
Query: 1012 VKLYREKCSELEEQQLHLNVGLGKIAETVEQVEEMQKSLAVKSQELQSKNEAANLKLKEM 1071
+ L REK ++E+ + L + + V ++++ ++ + + + L+S+ + ++ ++
Sbjct: 4 INLIREKPDYVKERLATRDKELVSLVDKVLELDKRRREIIKRLEALRSERNKLSKEIGKL 63
Query: 1072 IKDQQEAEKRKVQSQDIQAEIEKQTVEIAQ 1101
++ ++ + + + ++++ EI++ E+ +
Sbjct: 64 KREGKDTTEIQNRVKELKEEIDRLEEELRK 93
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 384
Score = 34.7 bits (79), Expect = 0.27
Identities = 15/135 (11%), Positives = 35/135 (25%), Gaps = 22/135 (16%)
Query: 407 SLLYTWLAEHKP--LVLCGPPGSGKTMTLLSALRAL----------PDMEVVSLNFSSAT 454
+ ++ + G G+GKT + D++ +N
Sbjct: 34 IAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVG 93
Query: 455 TP------ELLLKTFDHYCEYRKTPNGVILSPIQ---LGKWLVLFCDEINLPDMDKYATQ 505
L K G + I+ +++ DE++ + +
Sbjct: 94 GTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDT-LVKRRGGD 152
Query: 506 RVISFLRQLIEQRGF 520
V+ L +
Sbjct: 153 IVLYQLLRSDANISV 167
>2eyu_A Twitching motility protein PILT; pilus retraction motor,
C-terminal domain PILT, protein transport; 1.87A
{Aquifex aeolicus}
Length = 261
Score = 34.1 bits (79), Expect = 0.30
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 8/51 (15%)
Query: 36 LYQISNLNHGLMMV-GPSGSGKSTAWKVLLKALERYEGVEGVAHII---DP 82
+ ++ + GL++V GP+GSGKST + ++ Y HII DP
Sbjct: 17 VLELCHRKMGLILVTGPTGSGKSTT----IASMIDYINQTKSYHIITIEDP 63
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop,
transferase; HET: ADP; 2.33A {Enterobacteria phage T4}
SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A*
2ia5_A
Length = 301
Score = 33.9 bits (77), Expect = 0.35
Identities = 8/31 (25%), Positives = 13/31 (41%), Gaps = 2/31 (6%)
Query: 419 LVLCGPPGSGKTMTLLSAL-RALPDMEVVSL 448
++ G PGSGK+ T P ++
Sbjct: 5 ILTIGCPGSGKS-TWAREFIAKNPGFYNINR 34
Score = 32.7 bits (74), Expect = 0.99
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 46 LMMVGPSGSGKSTAWKVLLKALERY 70
++ +G GSGKST + + +
Sbjct: 5 ILTIGCPGSGKSTWAREFIAKNPGF 29
Score = 30.4 bits (68), Expect = 5.3
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 760 LLLIGVSGAGKTTLSR 775
+L IG G+GK+T +R
Sbjct: 5 ILTIGCPGSGKSTWAR 20
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI,
protein structure initiative; 1.90A {Geobacillus
stearothermophilus} SCOP: c.37.1.6
Length = 201
Score = 33.5 bits (77), Expect = 0.36
Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 4/36 (11%)
Query: 744 DHVLRI-DRIFRQPQGHLLLIGV---SGAGKTTLSR 775
D + + I L++G+ S +GKTTL+
Sbjct: 5 DRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLAN 40
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR
complex, HMR, HML, TELO AAA+ domain, structural,
nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Length = 318
Score = 34.1 bits (77), Expect = 0.37
Identities = 9/133 (6%), Positives = 34/133 (25%), Gaps = 25/133 (18%)
Query: 407 SLLYTWLAEHKP--LVLCGPPGSGKTMTLLSALRAL---------PDMEVVSLNFSSATT 455
+Y L + + S K + + L P + + ++
Sbjct: 34 LPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAG 93
Query: 456 PELLLKTFDHYCEYRKTPNGVILSPIQ---------LGKWLVLFCDEINLPDMDKYATQR 506
+ L + + L + + ++ + +++
Sbjct: 94 MDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNP-----ENLLSEK 148
Query: 507 VISFLRQLIEQRG 519
++ + + I +
Sbjct: 149 ILQYFEKWISSKN 161
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural
genomics, structural genomics consortium, SGC; 2.20A
{Plasmodium yoelii yoelii str}
Length = 260
Score = 33.7 bits (78), Expect = 0.42
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 6/44 (13%)
Query: 49 VGPSGSGKSTAWKVLLKALERYEGVEGVAHI--IDPKAISKEAL 90
VG +GSGKST + K L R+ EG I + ++ ++
Sbjct: 52 VGHTGSGKST----IAKLLYRFYDAEGDIKIGGKNVNKYNRNSI 91
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane,
nucleotide-binding, RNA replication, transmembrane,
viral protein; 1.80A {Japanese encephalitis virus} PDB:
2v8o_A 2qeq_A
Length = 459
Score = 34.0 bits (78), Expect = 0.43
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 404 RHESLLYTWLAEHKPLVLCGPPGSGKT 430
+ L + + VL PGSGKT
Sbjct: 9 QMGRGSPNMLRKRQMTVLDLHPGSGKT 35
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein,
nuclear protein, neurogenesis, cytosk LIS1 binding,
differentiation; 2.24A {Rattus norvegicus}
Length = 189
Score = 33.2 bits (75), Expect = 0.48
Identities = 17/116 (14%), Positives = 53/116 (45%), Gaps = 6/116 (5%)
Query: 1016 REKCSELEEQQLHLNVGLGKIAETVEQVEEMQKSLAVKSQELQSKNEAANLKLKEMIKDQ 1075
+E+ + +E + E +++ E Q+ EL+++ A + +++ Q
Sbjct: 9 KEETAYWKELSMKYKQ---SFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDL---Q 62
Query: 1076 QEAEKRKVQSQDIQAEIEKQTVEIAQKRVFVMEDLAQVEPAVMDAQQAVKEIKKQQ 1131
+ ++ K + + ++ ++E Q + ++ + +DL+Q + V+E+++
Sbjct: 63 ADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQAN 118
Score = 29.7 bits (66), Expect = 5.5
Identities = 16/118 (13%), Positives = 42/118 (35%), Gaps = 3/118 (2%)
Query: 1236 KKVEPLRLELKSLEVQASENKAKGEETKDLITQLEKSIASYKDEYAQLIAQATAIKTDLD 1295
++ L+ + + L+ + K K E Q K ++ +D+ +Q A + +
Sbjct: 56 QRNRDLQADNQRLKYEVEALKEKLEHQY---AQSYKQVSVLEDDLSQTRAIKEQLHKYVR 112
Query: 1296 NVQAKFYEYAQLIAQATAIKTDLDNVQAKVERSMALLKSLGIERERWEATSETFRSQM 1353
++ + + D + + A L+S E+E + + + +
Sbjct: 113 ELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELDEKESLLVSVQRLKDEA 170
Score = 29.7 bits (66), Expect = 6.3
Identities = 16/98 (16%), Positives = 34/98 (34%)
Query: 1041 EQVEEMQKSLAVKSQELQSKNEAANLKLKEMIKDQQEAEKRKVQSQDIQAEIEKQTVEIA 1100
E + ++S EL E + E+ +AE+R Q ++ + +
Sbjct: 17 ELSMKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALK 76
Query: 1101 QKRVFVMEDLAQVEPAVMDAQQAVKEIKKQQLVELRSM 1138
+K + + D + IK+Q +R +
Sbjct: 77 EKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVREL 114
Score = 28.9 bits (64), Expect = 9.2
Identities = 11/95 (11%), Positives = 37/95 (38%), Gaps = 7/95 (7%)
Query: 1016 REKCSELEEQQLHLNVGLGKIAETVEQVEEMQKSLAVKSQELQSKNEAANLKLKEMIKDQ 1075
+ S+ + L+ + ++ + + +E +++ + ++ + + A + + +
Sbjct: 94 EDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESEL 153
Query: 1076 QEAEKRKVQSQ-------DIQAEIEKQTVEIAQKR 1103
E E V Q D++ E+ + + R
Sbjct: 154 DEKESLLVSVQRLKDEARDLRQELAVRERQQEVTR 188
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A
{Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A
1ko5_A* 1ko8_A* 1kof_A*
Length = 175
Score = 32.7 bits (74), Expect = 0.49
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 755 QPQGHLLLIGVSGAGKTTLSRFVA 778
+L+GVSG+GK+ ++ VA
Sbjct: 6 HDHHIYVLMGVSGSGKSAVASEVA 29
Score = 30.4 bits (68), Expect = 3.1
Identities = 18/75 (24%), Positives = 30/75 (40%), Gaps = 3/75 (4%)
Query: 43 NHGLMMVGPSGSGKSTAWKVLLKALERYEGVEGVAHIIDPKAISKEALYGVLDPNTRE-W 101
+H +++G SGSGKS + L ++G + + I K A L+ + R+ W
Sbjct: 8 HHIYVLMGVSGSGKSAVASEVAHQL-HAAFLDG-DFLHPRRNIEKMASGEPLNDDDRKPW 65
Query: 102 TDGLFTHILRRIIDN 116
L N
Sbjct: 66 LQALNDAAFAMQRTN 80
>2ex3_B Protein GP3, DNA terminal protein; DNA polymerase: protein primer
complex, transferase-replicat complex; HET: DNA; 3.00A
{Bacillus phage PHI29} SCOP: a.263.1.1
Length = 230
Score = 33.3 bits (75), Expect = 0.50
Identities = 30/154 (19%), Positives = 66/154 (42%), Gaps = 19/154 (12%)
Query: 1060 KNE----AANLKLKEMIKDQQEAEKRKVQSQDIQAEIEKQTVEIAQKRVFVMEDLAQVEP 1115
KN A+ K+ E+ ++ +E ++ + + I+A +K+ + + + + +A P
Sbjct: 43 KNAYGVVASKAKIAEIERNTKEVQR--LVDEKIKAMKDKEYYAGGKPQGTIEQRIAMTSP 100
Query: 1116 AVMDAQQAVKEIKKQQLVELRSMANPPSVVKLALESICLLLGENATDWKAIRAVVMRENF 1175
+ ++RS + ++ ES+ + + K I+ ++ NF
Sbjct: 101 ---AHVTGINRPHDFDFSKVRSYSR----LRTLEESMEMRTDPQYYEKKMIQ---LQLNF 150
Query: 1176 INSIVSNFNTEMITDEVREKMHSRYLSNPDYSYE 1209
I S+ +FN+ DE+ E++ PD YE
Sbjct: 151 IKSVEGSFNSFDAADELIEELKK---IPPDDFYE 181
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET:
ATP; NMR {Saccharomyces cerevisiae}
Length = 608
Score = 33.8 bits (78), Expect = 0.52
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 48 MVGPSGSGKSTAWKVLLKALERYEG 72
M+G +G+GK+T K+L AL+ EG
Sbjct: 383 MMGENGTGKTTLIKLLAGALKPDEG 407
Score = 32.7 bits (75), Expect = 1.1
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 35 QLYQISNLNHG--LMMVGPSGSGKSTAWKVLLKALERYEG 72
+L+++ G L +VG +G GKSTA K+L + G
Sbjct: 93 KLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLG 132
Score = 31.5 bits (72), Expect = 2.7
Identities = 11/64 (17%), Positives = 26/64 (40%), Gaps = 15/64 (23%)
Query: 760 LLLIGVSGAGKTTLSRFVA---------------FMNGLSVFQIRAHNKYTGADFDEDLR 804
L L+G +G GK+T + +A + + F+ Y ++D++
Sbjct: 106 LGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIK 165
Query: 805 TVLR 808
+++
Sbjct: 166 AIIK 169
Score = 30.4 bits (69), Expect = 6.7
Identities = 7/23 (30%), Positives = 8/23 (34%)
Query: 419 LVLCGPPGSGKTMTLLSALRALP 441
L L G G GK+ L
Sbjct: 106 LGLVGTNGIGKSTALKILAGKQK 128
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase,
hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex
aeolicus} PDB: 2eww_A* 2gsz_A*
Length = 372
Score = 33.3 bits (77), Expect = 0.62
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 8/51 (15%)
Query: 36 LYQISNLNHGLMMV-GPSGSGKSTAWKVLLKALERYEGVEGVAHII---DP 82
+ ++ + GL++V GP+GSGKST + ++ Y HII DP
Sbjct: 128 VLELCHRKMGLILVTGPTGSGKSTT----IASMIDYINQTKSYHIITIEDP 174
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis,
hydrolyase/translation complex; HET: ADP; 1.90A
{Pyrococcus furiosus}
Length = 538
Score = 33.4 bits (77), Expect = 0.64
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 48 MVGPSGSGKSTAWKVLLKALERYEG 72
+VGP+G GK+T K+L E EG
Sbjct: 317 IVGPNGIGKTTFVKMLAGVEEPTEG 341
Score = 32.3 bits (74), Expect = 1.7
Identities = 15/34 (44%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
Query: 36 LYQISNLNHG--LMMVGPSGSGKSTAWKVLLKAL 67
LY++ + G + +VGP+G+GKSTA K+L L
Sbjct: 38 LYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQL 71
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic
subunit]; helicase, flavivirus, DEAD-BOX, ATPase,
rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP:
c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Length = 440
Score = 33.3 bits (76), Expect = 0.65
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 411 TWLAEHKPLVLCGPPGSGKT 430
L + VL PG+GKT
Sbjct: 3 HMLKKGMTTVLDFHPGAGKT 22
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9;
2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Length = 243
Score = 32.8 bits (74), Expect = 0.66
Identities = 21/115 (18%), Positives = 44/115 (38%), Gaps = 7/115 (6%)
Query: 1020 SELEEQQLHLNVGLGKIAETVEQ-VEEMQKSLAVKSQELQSKNEAANLKLKEMIKDQQEA 1078
+L E Q L+ ++ + V+ ++ LA S EL+ + A LKE +
Sbjct: 132 QKLHELQEKLSPLGEEMRDRARAHVDALRTHLAPYSDELRQRLAARLEALKENGGARLAE 191
Query: 1079 EKRKV--QSQDIQAEIEKQTVEIAQKRVFVMEDL-AQVEPAVMDAQQAVKEIKKQ 1130
K + + + ++ Q + V+E A+ ++ K++ Q
Sbjct: 192 YHAKATEHLSTLSEKAKPALEDLRQGLLPVLESFKVSFLSAL---EEYTKKLNTQ 243
Score = 32.8 bits (74), Expect = 0.81
Identities = 19/128 (14%), Positives = 44/128 (34%), Gaps = 10/128 (7%)
Query: 1021 ELEEQQLHLNVGLGKIAETVEQ-----VEEMQKSLAVKSQELQSKNEAANLKLKEMIKDQ 1075
+++ + E Q E+Q+ K ELQ K ++++ +
Sbjct: 96 KVQPYLDDFQKKWQEEMELYRQKVEPLRAELQEGARQKLHELQEKLSPLGEEMRDRARAH 155
Query: 1076 QEAEKRKVQ--SQDIQAEIEKQTVEIAQKRVFVMEDLAQVEPAVMDAQQAVKEIKKQQLV 1133
+A + + S +++ + + + + LA+ + + E K L
Sbjct: 156 VDALRTHLAPYSDELRQRLAARLEALKEN---GGARLAEYHAKATEHLSTLSEKAKPALE 212
Query: 1134 ELRSMANP 1141
+LR P
Sbjct: 213 DLRQGLLP 220
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase,
translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Length = 538
Score = 33.5 bits (77), Expect = 0.68
Identities = 9/25 (36%), Positives = 17/25 (68%)
Query: 48 MVGPSGSGKSTAWKVLLKALERYEG 72
++GP+G GK+T ++L+ + EG
Sbjct: 299 ILGPNGIGKTTFARILVGEITADEG 323
Score = 33.1 bits (76), Expect = 0.95
Identities = 9/32 (28%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 34 LQLYQISNLNHG--LMMVGPSGSGKSTAWKVL 63
+L+ + + L ++G +G GK+T K+L
Sbjct: 14 FKLFGLPTPKNNTILGVLGKNGVGKTTVLKIL 45
Score = 30.0 bits (68), Expect = 8.6
Identities = 7/16 (43%), Positives = 12/16 (75%)
Query: 760 LLLIGVSGAGKTTLSR 775
L ++G +G GKTT+ +
Sbjct: 28 LGVLGKNGVGKTTVLK 43
>2w58_A DNAI, primosome component (helicase loader); ATP-binding,
nucleotide-binding, hydrolase; HET: ADP; 2.50A
{Geobacillus kaustophilus HTA426}
Length = 202
Score = 32.7 bits (75), Expect = 0.68
Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 410 YTWLAEHKPLVLCGPPGSGKTMTLLSAL 437
Y + K L L G G GKT LL+A+
Sbjct: 48 YEPGKKMKGLYLHGSFGVGKT-YLLAAI 74
Score = 29.7 bits (67), Expect = 5.8
Identities = 10/55 (18%), Positives = 22/55 (40%)
Query: 3 GLKEKIKEVCREEFLVCGEGNEEGGPWMEKVLQLYQISNLNHGLMMVGPSGSGKS 57
+ +I + + +G + + E+ + Y+ GL + G G GK+
Sbjct: 14 FMPREILRASLSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKT 68
>1p9r_A General secretion pathway protein E; bacterial type II secretion
system cytoplasmic protein - GSPE, putative ATPase/ ATP
binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11
PDB: 1p9w_A*
Length = 418
Score = 33.3 bits (77), Expect = 0.69
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 5/34 (14%)
Query: 416 HKP----LVLCGPPGSGKTMTLLSALRALPDMEV 445
+P LV GP GSGK+ TL + L+ L E
Sbjct: 164 KRPHGIILV-TGPTGSGKSTTLYAGLQELNSSER 196
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP,
cyclic peptide, membrane protein; 3.80A {Mus musculus}
PDB: 3g61_A* 3g60_A*
Length = 1284
Score = 33.5 bits (77), Expect = 0.76
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 5/28 (17%)
Query: 49 VGPSGSGKSTAWKVLLKALER-YEGVEG 75
VG SG GKST V L ++R Y+ ++G
Sbjct: 422 VGNSGCGKSTT--VQL--MQRLYDPLDG 445
Score = 33.5 bits (77), Expect = 0.81
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 5/28 (17%)
Query: 49 VGPSGSGKSTAWKVLLKALER-YEGVEG 75
VG SG GKST +++ LER Y+ + G
Sbjct: 1065 VGSSGCGKST----VVQLLERFYDPMAG 1088
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding,
viral nucleoprotein, endoplasmic reticulum, helicase,
hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A*
2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A
2bhr_A
Length = 451
Score = 33.3 bits (76), Expect = 0.77
Identities = 5/19 (26%), Positives = 10/19 (52%)
Query: 412 WLAEHKPLVLCGPPGSGKT 430
+ + ++ PG+GKT
Sbjct: 15 IFRKKRLTIMDLHPGAGKT 33
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB;
ABC-transporter, transport protein; HET: ADP; 1.60A
{Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A*
2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Length = 247
Score = 32.8 bits (76), Expect = 0.78
Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 5/28 (17%)
Query: 49 VGPSGSGKSTAWKVLLKALER-YEGVEG 75
VG SGSGKST L K ++R Y G
Sbjct: 41 VGRSGSGKST----LTKLIQRFYIPENG 64
>1bf5_A Signal transducer and activator of transcription 1-alpha/beta;
complex (SH2 domain/DNA), SH2 domain, transcription
factor; HET: DNA PTR; 2.90A {Homo sapiens} SCOP: a.47.1.1
b.2.5.5 d.93.1.1
Length = 575
Score = 33.3 bits (75), Expect = 0.80
Identities = 21/115 (18%), Positives = 51/115 (44%), Gaps = 8/115 (6%)
Query: 1017 EKCSELEEQQLHLNVGLGKIAETVEQVEEMQKSLAVKSQELQSKNEAANLKLKEMIKDQQ 1076
+K EL+ + ++ + I ++ +E++Q K + LQ++ N K K +Q
Sbjct: 2 DKQKELDSKVRNVKDKVMCIEHEIKSLEDLQDEYDFKCKTLQNREHETNGVAKSDQKQEQ 61
Query: 1077 EAEKRKVQSQDIQAEIEKQTVEIAQKRVFVMEDLAQVEPAVMDAQQAVKEIKKQQ 1131
K+ D + + E+ K + ++ + A+++ + + E K++Q
Sbjct: 62 LLLKKMYLMLDNKRK------EVVHKIIELLNVTELTQNALINDE--LVEWKRRQ 108
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion
ATPase, ATP-binding, FIMB nucleotide-binding, transport;
HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB:
3jvu_A*
Length = 356
Score = 32.9 bits (76), Expect = 0.82
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 8/51 (15%)
Query: 36 LYQISNLNHGLMMV-GPSGSGKSTAWKVLLKALERYEGVEGVAHII---DP 82
++S++ GL++V GP+GSGKST L A+ Y HI+ DP
Sbjct: 115 FKRVSDVPRGLVLVTGPTGSGKSTT----LAAMLDYLNNTKYHHILTIEDP 161
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein
folding, ATP-binding, Ca binding, chaperone,
nucleotide-binding, phosphoprotein; HET: ATP; 2.30A
{Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Length = 675
Score = 33.1 bits (76), Expect = 0.83
Identities = 15/133 (11%), Positives = 40/133 (30%), Gaps = 23/133 (17%)
Query: 1029 LNVGLGKIAETVEQVEEMQKSLAVKSQELQSKNEAANLKLKEMIKDQQEAEKRKVQSQDI 1088
+ E +E + + VK +L L K++ + ++ + Q + +
Sbjct: 490 HTIEEAYTIEDIEAGSDTK---TVKKDDLTIVAHTFGLDAKKLNELIEKENEMLAQDKLV 546
Query: 1089 QAEIE------------KQTVEIAQKRVFVMEDLAQVEPAVMDA--------QQAVKEIK 1128
+ + +E + +++ + A ++K
Sbjct: 547 AETEDRKNTLEEYIYTLRGKLEEEYAPFASDAEKTKLQGMLNKAEEWLYDEGFDSIKAKY 606
Query: 1129 KQQLVELRSMANP 1141
+ EL S+ N
Sbjct: 607 IAKYEELASLGNI 619
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta
protein., structural genomics, PSI-2, protein structure
initiative; HET: G3D; 2.20A {Bacillus subtilis} PDB:
2axp_A*
Length = 173
Score = 32.0 bits (73), Expect = 0.86
Identities = 4/19 (21%), Positives = 11/19 (57%)
Query: 760 LLLIGVSGAGKTTLSRFVA 778
++L G K+T++ ++
Sbjct: 4 IILEGPDCCFKSTVAAKLS 22
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure
initiative, PSI, SGPP structural genomics of pathogenic
protozoa consortium; HET: ADP; 1.70A {Leishmania major}
SCOP: c.37.1.1
Length = 184
Score = 32.0 bits (72), Expect = 0.87
Identities = 14/82 (17%), Positives = 29/82 (35%), Gaps = 10/82 (12%)
Query: 419 LVLCGPPGSGKTMTLLSAL-RALPDMEVVSLNFSSATTPELLLKTFDHYCEYRKTPNGVI 477
+++ G PG+GKT ++ + L + + + L+K Y EY + I
Sbjct: 13 ILITGTPGTGKT-SMAEMIAAELDGFQHLEVGK--------LVKENHFYTEYDTELDTHI 63
Query: 478 LSPIQLGKWLVLFCDEINLPDM 499
+ + L +
Sbjct: 64 IEEKDEDRLLDFMEPIMVSRGN 85
Score = 32.0 bits (72), Expect = 1.0
Identities = 11/49 (22%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 760 LLLIGVSGAGKTTLSRFVA-FMNGLSVFQIR--AHNKYTGADFDEDLRT 805
+L+ G G GKT+++ +A ++G ++ + ++D +L T
Sbjct: 13 ILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKENHFYTEYDTELDT 61
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P;
hydrolase, type IV secretion, conjugation; 2.35A
{Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Length = 392
Score = 32.7 bits (74), Expect = 0.93
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 43 NHGLMMVGPSGSGKSTAWKVLLKALERYEGVEGVAHIIDPK 83
N ++ G+GKS K+LL +G + IIDP+
Sbjct: 35 NSNWTILAKPGAGKSFTAKMLLLRE-YMQGSRVI--IIDPE 72
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2
function project, S2F, unknown function; HET: ADP; 1.70A
{Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Length = 158
Score = 31.8 bits (73), Expect = 0.94
Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 749 IDRIFRQPQGHLLLIGVSGAGKTTLSRFVAFMNGLSV 785
+ ++ + + L G GAGKTTL+R + G+
Sbjct: 25 LLKLHTEKAIMVYLNGDLGAGKTTLTR--GMLQGIGH 59
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil,
coiled coil, cytoplasm, disease mutation, ectodermal
dysplasia; 3.20A {Homo sapiens}
Length = 130
Score = 31.4 bits (70), Expect = 0.96
Identities = 21/92 (22%), Positives = 42/92 (45%), Gaps = 4/92 (4%)
Query: 1046 MQKSLAVKSQELQSKNEAANLKLKEMIKDQQEAEKRKVQSQDIQAEIEKQTVEIAQKRVF 1105
M + QE QS+ EAA + + + + A Q++ +++E E + + +
Sbjct: 3 MASGSLGELQESQSRLEAATKECQAL---EGRARAASEQARQLESEREALQQQHSVQVDQ 59
Query: 1106 VMEDLAQVEPAVMDAQQAVKEIKKQQLVELRS 1137
+ VE A+ +QA E K+ +L +L+
Sbjct: 60 LRMQGQSVEAALRMERQAASEEKR-KLAQLQV 90
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold,
hydro; HET: ADP; 2.91A {Escherichia coli}
Length = 500
Score = 32.8 bits (75), Expect = 0.99
Identities = 7/32 (21%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 758 GHLLLIGVSGAGKTTLSRFVAF-MNGLSVFQI 788
+ L+G G K+ ++R + F F+
Sbjct: 42 ESVFLLGPPGIAKSLIARRLKFAFQNARAFEY 73
Score = 30.9 bits (70), Expect = 4.5
Identities = 20/97 (20%), Positives = 31/97 (31%), Gaps = 16/97 (16%)
Query: 406 ESLLYTWLA-EHKPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTPELLLKTFD 464
L L+ E + L GPPG K++ A + + +TPE +
Sbjct: 32 RLCLLAALSGES--VFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLS 89
Query: 465 HYCEY------RKTPNGVILSPIQLGKWLVLFCDEIN 495
R T + + I +F DEI
Sbjct: 90 IQALKDEGRYERLTSGYLPEAEI-------VFLDEIW 119
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides,
nucleotides, transferase; HET: 5GP; 1.85A {Coxiella
burnetii}
Length = 205
Score = 32.1 bits (74), Expect = 1.1
Identities = 10/34 (29%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 40 SNLNHGLMMV--GPSGSGKSTAWKVLLKALERYE 71
+ +N + + PSG+GK++ + L+KAL +
Sbjct: 2 NAMNKANLFIISAPSGAGKTSLVRALVKALAEIK 35
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase;
HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP:
c.37.1.20 PDB: 1s9h_A
Length = 267
Score = 32.2 bits (73), Expect = 1.1
Identities = 10/49 (20%), Positives = 17/49 (34%), Gaps = 4/49 (8%)
Query: 407 SLLYTWLAEHKP----LVLCGPPGSGKTMTLLSALRALPDMEVVSLNFS 451
S+ W + + L GP +GKT + +P V+
Sbjct: 91 SVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTVPFYGCVNWTNE 139
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer,
nucleotide twinning, protein complex, protein transport;
HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1
c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D
2iyl_D* 2cnw_D* 2j7p_D*
Length = 304
Score = 32.5 bits (75), Expect = 1.2
Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 10/72 (13%)
Query: 711 VGTT-----ELREYVQARLKVFYEEELDVQLV-LFDEVLDHVLRIDRIFRQPQGH----L 760
+ T E+R + LK +E+L L L + +P +
Sbjct: 46 LSATEEILQEVRASGRKDLKEAVKEKLVGMLEPDERRATLRKLGFNPQKPKPVEPKGRVV 105
Query: 761 LLIGVSGAGKTT 772
L++GV+G GKTT
Sbjct: 106 LVVGVNGVGKTT 117
>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral
protein complex, cell cycle; 2.30A {Homo sapiens} PDB:
2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A
Length = 704
Score = 32.6 bits (73), Expect = 1.2
Identities = 14/99 (14%), Positives = 39/99 (39%), Gaps = 2/99 (2%)
Query: 1007 FINHFVKLYREKCSELEEQQLHLNVGLGKIAETVEQVEEMQKSLAVKS--QELQSKNEAA 1064
+ ++Y ++++E L I + ++ +M++S + +E+ A
Sbjct: 606 SVTELDRVYGGLTTKVQESLKKQEGLLKNIQVSHQEFSKMKQSNNEANLREEVLKNLATA 665
Query: 1065 NLKLKEMIKDQQEAEKRKVQSQDIQAEIEKQTVEIAQKR 1103
E++ + +E K + +I + + +I R
Sbjct: 666 YDNFVELVANLKEGTKFYNELTEILVRFQNKCSDIVFAR 704
Score = 30.7 bits (68), Expect = 4.7
Identities = 10/99 (10%), Positives = 33/99 (33%), Gaps = 4/99 (4%)
Query: 1033 LGKIAETVEQVEEMQKSLAVKSQELQSKNEAANLKLKEMIKDQQEAEKRKVQSQDIQAEI 1092
+ + + ++E++K +L+S N K + + + ++
Sbjct: 555 VNVLKSLLSNLDEVKKEREGLENDLKSVNFDMTSKFLTALAQDGVINEEALSVTELDRVY 614
Query: 1093 EKQTVEIAQKRVFVMEDLAQVEPAVMDAQQAVKEIKKQQ 1131
T ++ + L ++ + Q ++K+
Sbjct: 615 GGLTTKVQESLKKQEGLLKNIQ----VSHQEFSKMKQSN 649
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase,
antibiotic resistance, phosphorylation, mononucleoti
binding fold; HET: ATP; 2.50A {Streptomyces venezuelae}
SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A*
1qhy_A*
Length = 178
Score = 31.7 bits (71), Expect = 1.3
Identities = 18/95 (18%), Positives = 29/95 (30%), Gaps = 4/95 (4%)
Query: 46 LMMVGPSGSGKSTAWKVLLKALER---YEGVEGVAHIIDPKAISKEALYGVLDPNTREWT 102
+++ G S +GKS + L L GV+ + + K S E D +
Sbjct: 6 IILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIE-FDADGGVSI 64
Query: 103 DGLFTHILRRIIDNVRGEISKRQWIIFDGDVDPEW 137
F + + V II D
Sbjct: 65 GPEFRALEGAWAEGVVAMARAGARIIIDDVFLGGA 99
Score = 30.5 bits (68), Expect = 3.3
Identities = 5/31 (16%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 419 LVLCGPPGSGKTMTLLSALRALPDMEVVSLN 449
++L G +GK+ ++ L+++ ++
Sbjct: 6 IILNGGSSAGKS-GIVRCLQSVLPEPWLAFG 35
Score = 29.7 bits (66), Expect = 6.0
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 760 LLLIGVSGAGKTTLSR 775
++L G S AGK+ + R
Sbjct: 6 IILNGGSSAGKSGIVR 21
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP;
2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Length = 271
Score = 32.1 bits (74), Expect = 1.3
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 5/28 (17%)
Query: 49 VGPSGSGKSTAWKVLLKALER-YEGVEG 75
VGP+GSGKST + L+ Y+ G
Sbjct: 51 VGPNGSGKST----VAALLQNLYQPTGG 74
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A
{Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Length = 695
Score = 32.6 bits (73), Expect = 1.3
Identities = 75/692 (10%), Positives = 206/692 (29%), Gaps = 51/692 (7%)
Query: 714 TELREYVQARLKVFYEEELDVQLVLFDEVLDHVLRIDRIFRQPQGHLLLIGVSGAGKTTL 773
L + + K + + + ++ + + +Q LL++G GK+T
Sbjct: 26 VCLNKLAETINKAELAGDSSSGKLSLERDIEDITIASKNLQQGVFRLLVLGDMKRGKSTF 85
Query: 774 SRFVAFMNGLSVFQIRAHNKYTGADFDEDLRTVLRRSGCKNEKIAFLLDESNVLESGFLE 833
+ N L T + + + + + K+ + + E
Sbjct: 86 LNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAE 145
Query: 834 RMNTLLANGEIPGLFEGDEYTTLMTQCKEGAQR-EGLMLDSNEELYKWFTQQVMKNLH-V 891
+ + +T ++G + + L+ E + + + N H +
Sbjct: 146 AKKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNEL-SLGYVNNCHAI 204
Query: 892 VFTMNPSSEGLKD------RAATSPALFNRCVLNWFGDWSDTALYQVAKEFTSKIDLDGP 945
+F M S L ++N + ++ + E +
Sbjct: 205 LFVMRASQPCTLGERRYLENYIKGRGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLR 264
Query: 946 QNWKAPDFFPSVCSLVSTTPSHRDSVINACVYVHQTLHKANARLSKRGSRTMAITPRHYL 1005
Q + A +L ++ + V+ ++ RL + + +
Sbjct: 265 QVFNA--------NLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQAD---LDGTGFP 313
Query: 1006 DFINHFVKLYREKCSELEEQQLHLNVGLGKIAETVEQVEEMQKSLAVKSQELQSKNEAAN 1065
F++ + + E +Q+ L T E V L EL+ + ++
Sbjct: 314 KFMDSLNTFLTRERAIAELRQVRTLARLA-CNHTREAVARRIPLLEQDVNELKKRIDSVE 372
Query: 1066 LKLKEMIKDQQEAEKRKVQSQDIQAEIEKQTV--EIAQKRVFVMEDLAQVEPAVMDAQQA 1123
+ ++ + E +K + ++D QA ++ + D + +P +
Sbjct: 373 PEFNKLTGIRDEFQKEIINTRDTQARTISESFRSYVLNLGNTFENDFLRYQPELNLFDFL 432
Query: 1124 VKEIKKQQLVELRS-------------MANPPSVVKLALESICLLLGENATDWK----AI 1166
++ L+ + A + + + + I
Sbjct: 433 SSGKREAFNAALQKAFEQYITDKSAAWTLTAEKDINAAFKELSRSASQYGASYNQITDQI 492
Query: 1167 RAVVMRENFINSIVSNFNTEMITDEVREKMHSRYLSNPDYSYEKANRASMACGPMVKWAI 1226
+ ++ + + + M LS + + A ++
Sbjct: 493 TEKLTGKDVKVHTTTTAEEDNSPGWAKWAMGLLSLSKGNLAGFALAGAGFDWKNILLNYF 552
Query: 1227 AQISYADMLKKVEPLRLELKSLEVQASENKAKG--EETKDLITQLEKSIASYKDEYAQLI 1284
I ++ V + L + + ++L+ +K + + + A
Sbjct: 553 TVIGIGGIITAVTGILLGPIGFALLGLGVGFLQADQARRELVKTAKKELVKHLPQVAHEQ 612
Query: 1285 AQATAIKTDLDNVQAKFYEYAQLIAQATAIKTDLDNVQAKVERSMALLKSLGIERERWEA 1344
+Q + V+ F Y + +++ I D+ + +++++ + ++ I RE
Sbjct: 613 SQVVY-----NAVKECFDSYEREVSK--RINDDIVSRKSELDNLVKQKQTREINRESEFN 665
Query: 1345 TSETFRSQMATIIGDVLLSSAYLAYAGYFDQH 1376
+ + + + + +AY Y+ H
Sbjct: 666 RLKNLQEDVIAQLQK--IEAAYSNLLAYYSHH 695
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein
transport, G protein, proline isomerization, circular
permutation; 2.20A {Saccharomyces cerevisiae}
Length = 193
Score = 31.6 bits (72), Expect = 1.4
Identities = 6/35 (17%), Positives = 15/35 (42%)
Query: 739 FDEVLDHVLRIDRIFRQPQGHLLLIGVSGAGKTTL 773
+ + + + Q +++ G +GKT+L
Sbjct: 30 REWIDEKLGGGSGGGGSYQPSIIIAGPQNSGKTSL 64
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG,
structural genomics, midwest center for structural
genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB:
3h0k_A
Length = 179
Score = 31.4 bits (71), Expect = 1.4
Identities = 19/106 (17%), Positives = 33/106 (31%), Gaps = 16/106 (15%)
Query: 49 VGPSGSGKSTAWKVLLKALERYEGVEGVAHIIDPKAISKEALYGVLDPNT-----REWTD 103
G GSGKS K L+ G I+ + K + +
Sbjct: 7 TGMPGSGKSEF----AKLLKER----GAKVIVMSDVVRKRYSIEAKPGERLMDFAKRLRE 58
Query: 104 GLFTHIL-RRIIDNVRGEISKRQWIIFDGDVDPEWVENLNSVLDDN 148
++ R ++ + ++FDG VE +L D+
Sbjct: 59 IYGDGVVARLCVEELGTSNHDL--VVFDGVRSLAEVEEFKRLLGDS 102
>3ec2_A DNA replication protein DNAC; helicase loader, replication
initiation factor, ATP-binding, nucleotide-binding; HET:
DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Length = 180
Score = 31.6 bits (72), Expect = 1.4
Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 419 LVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTPELLLK 461
L G PG GKT ++ L+A+ + + + F T +L+ +
Sbjct: 41 LTFVGSPGVGKTHLAVATLKAIYEKKGIRGYF--FDTKDLIFR 81
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and
permease protein; asymmetric dimer, tetramer,
P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus
lactis} SCOP: c.37.1.12
Length = 243
Score = 31.7 bits (73), Expect = 1.4
Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 5/28 (17%)
Query: 49 VGPSGSGKSTAWKVLLKALER-YEGVEG 75
GPSG GKST + LER Y+ G
Sbjct: 34 AGPSGGGKST----IFSLLERFYQPTAG 57
>2qgz_A Helicase loader, putative primosome component; structural genomics,
PSI-2, protein structure initiative; 2.40A
{Streptococcus pyogenes serotype M3}
Length = 308
Score = 32.1 bits (73), Expect = 1.5
Identities = 14/55 (25%), Positives = 20/55 (36%), Gaps = 2/55 (3%)
Query: 412 WLAEHKPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTPELLLKTFDHY 466
AE K L L G G GK+ L + L + + VS P + +
Sbjct: 148 PSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTL--LHFPSFAIDVKNAI 200
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2,
ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding,
GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB:
3d6t_B*
Length = 184
Score = 31.6 bits (72), Expect = 1.5
Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 7/42 (16%)
Query: 760 LLLIGVSGAGKTTL-SRFVAFMNGLSVFQIRAHNKYT-GADF 799
L+++G +G+GKTTL + + + T G D
Sbjct: 5 LMIVGNTGSGKTTLLQQLMK-----TKKSDLGMQSATVGIDV 41
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase;
2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A*
2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Length = 219
Score = 31.7 bits (73), Expect = 1.5
Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 40 SNLNHGLMMV--GPSGSGKSTAWKVLLK 65
++ G + + PSG+GKS+ + LLK
Sbjct: 11 HHMAQGTLYIVSAPSGAGKSSLIQALLK 38
Score = 29.8 bits (68), Expect = 5.3
Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 4/38 (10%)
Query: 419 LVLCGPPGSGKTMTLLSALRALPDMEVVSLNFS-SATT 455
++ P G+GK+ +L+ AL + S S TT
Sbjct: 19 YIVSAPSGAGKS-SLIQALLK--TQPLYDTQVSVSHTT 53
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase;
3.20A {Thermus thermophilus} SCOP: c.37.1.20
Length = 278
Score = 31.5 bits (72), Expect = 1.9
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 7/48 (14%)
Query: 754 RQPQGHLLLIGVSGAGKTTLSRFVAFMNGLSVFQIRAHNKYTGADFDE 801
R P+G +LL+G G GKT L+R VA + +G+DF E
Sbjct: 71 RIPKG-VLLVGPPGVGKTHLARAVAGEARVPFITA------SGSDFVE 111
>3p8q_A GP5, head protein; virus procapsid particles, virus; 5.20A
{Enterobacteria phage HK97} PDB: 3qpr_A
Length = 385
Score = 31.7 bits (71), Expect = 2.0
Identities = 18/107 (16%), Positives = 38/107 (35%), Gaps = 1/107 (0%)
Query: 1020 SELEEQQLHLNVGLGKIAETVEQVEEMQKSLAVKSQELQSKNEAANLKLKEMIKDQQEAE 1079
SEL Q + K+ + + + +S S++LQS +L + + E
Sbjct: 2 SELALIQKAIEESQQKMTQLFDAQKAEIESTGQVSKQLQSDLMKVQEELTKSGTRLFDLE 61
Query: 1080 KRKVQSQDIQAEIEKQTVEIAQKRVFVMEDLAQVEPAVMDAQQAVKE 1126
++ + E +K E A + + D Q +++
Sbjct: 62 QKLASGAENPGE-KKSFSERAAEELIKSWDGKQGTFGAKTFNKSLGS 107
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain,
PIN-tower interface, coupling hydrolysis to DNA
unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Length = 459
Score = 31.9 bits (72), Expect = 2.0
Identities = 13/79 (16%), Positives = 29/79 (36%), Gaps = 17/79 (21%)
Query: 372 EWVPWSNKVPQIEV-ETQKVAASDVVVPTLDTVRHESLLYTWLAEHKPLVLCGPPGSGKT 430
VP + + ++ E QK A ++ + + + GP G+G T
Sbjct: 13 GLVPRGSHMTFDDLTEGQKNAF-------------NIVMKAIKEKKHHVTINGPAGTGAT 59
Query: 431 ---MTLLSALRALPDMEVV 446
++ AL + + ++
Sbjct: 60 TLTKFIIEALISTGETGII 78
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase;
2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB:
1iy0_A* 1iy1_A*
Length = 254
Score = 31.5 bits (72), Expect = 2.1
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 7/48 (14%)
Query: 754 RQPQGHLLLIGVSGAGKTTLSRFVAFMNGLSVFQIRAHNKYTGADFDE 801
R P+G +LL+G G GKT L+R VA + +G+DF E
Sbjct: 47 RIPKG-VLLVGPPGVGKTHLARAVAGEARVPFITA------SGSDFVE 87
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain,
ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus}
SCOP: c.37.1.20 PDB: 1nsf_A*
Length = 272
Score = 31.3 bits (71), Expect = 2.1
Identities = 20/100 (20%), Positives = 33/100 (33%), Gaps = 25/100 (25%)
Query: 335 KLKMRSDFGNFLRSVTTITLPATSSDIVDFEVNIKNGEWVPWSNKVPQIEVETQKVAASD 394
+ + PA ++ D+ I NG + W + V ++ D
Sbjct: 2 RGSHHHHHHGSTMDIK----PAFGTNQEDYASYIMNG-IIKWGDPVTRVL---------D 47
Query: 395 VVVPTLDTVRHESLLYTWLAEHKPLV---LCGPPGSGKTM 431
+ + ++ PLV L GPP SGKT
Sbjct: 48 DGELLVQQTK--------NSDRTPLVSVLLEGPPHSGKTA 79
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial;
membrane protein, mitochondrial transport; HET: ACP LMT
CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Length = 595
Score = 31.8 bits (73), Expect = 2.2
Identities = 13/22 (59%), Positives = 14/22 (63%), Gaps = 4/22 (18%)
Query: 49 VGPSGSGKSTAWKVLLKALERY 70
VGPSGSGKST + L L R
Sbjct: 376 VGPSGSGKSTV--LSL--LLRL 393
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A
{Escherichia coli} SCOP: c.37.1.20
Length = 257
Score = 31.1 bits (71), Expect = 2.5
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 7/48 (14%)
Query: 754 RQPQGHLLLIGVSGAGKTTLSRFVAFMNGLSVFQIRAHNKYTGADFDE 801
+ P+G +L++G G GKT L++ +A + F I +G+DF E
Sbjct: 43 KIPKG-VLMVGPPGTGKTLLAKAIAGEAKVPFFTI------SGSDFVE 83
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian
virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A
2h1l_A
Length = 377
Score = 31.5 bits (71), Expect = 2.5
Identities = 8/34 (23%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 419 LVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSS 452
+ GP SGKT + L + +++N
Sbjct: 172 WLFKGPIDSGKTTLAAALLELC-GGKALNVNLPL 204
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon
cuniculi}
Length = 218
Score = 31.1 bits (71), Expect = 2.5
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 9/42 (21%)
Query: 760 LLLIGVSGAGKTT-LSRFV--AFMN------GLSVFQIRAHN 792
+ LIG G GKTT ++R + F G + +
Sbjct: 14 ICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLD 55
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A
{Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB:
1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Length = 334
Score = 31.2 bits (71), Expect = 2.6
Identities = 10/44 (22%), Positives = 16/44 (36%), Gaps = 4/44 (9%)
Query: 28 PWMEKVLQ----LYQISNLNHGLMMVGPSGSGKSTAWKVLLKAL 67
PW+ + YQ +H L++ G G L + L
Sbjct: 5 PWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYL 48
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport
protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 187
Score = 30.7 bits (70), Expect = 2.6
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 748 RIDRIFRQPQGHLLLIGVSGAGKTTL 773
RI R+F + ++++G+ AGKTT+
Sbjct: 7 RIWRLFNHQEHKVIIVGLDNAGKTTI 32
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA
repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A
{Geobacillus}
Length = 670
Score = 31.3 bits (72), Expect = 2.9
Identities = 25/82 (30%), Positives = 33/82 (40%), Gaps = 26/82 (31%)
Query: 45 GLMMV--GPSGSGKSTA-----WKVLLKALER-------YEGVEGVAHI-----IDPKAI 85
G + G SGSGKST +K L + L R + + G+ H+ ID I
Sbjct: 348 GTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPI 407
Query: 86 -----SKEALY-GVLDPNTREW 101
S A Y GV D R+
Sbjct: 408 GRTPRSNPATYTGVFDD-IRDV 428
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural
genomics, structural G consortium, SGC, protein
transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z6x_A* 3aq4_A*
Length = 192
Score = 30.7 bits (70), Expect = 3.0
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 749 IDRIFRQPQGHLLLIGVSGAGKTTL 773
RIF + Q +L++G+ AGKTT+
Sbjct: 21 FSRIFGKKQMRILMVGLDAAGKTTI 45
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial
conjugation, F1-ATPase-like quaternary structure, ring
helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB:
1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Length = 437
Score = 31.4 bits (71), Expect = 3.0
Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 5/42 (11%)
Query: 43 NHGLMMVGPSGSGKSTA-WKVLLKALERYEGVEGVAHIIDPK 83
L++ G +G+GKS ++ L R I+DP
Sbjct: 53 PRHLLVNGATGTGKSVLLRELAYTGLLR----GDRMVIVDPN 90
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL
helix motif, transcription regulator; 3.20A
{Streptococcus pneumoniae}
Length = 253
Score = 31.0 bits (69), Expect = 3.0
Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 4/68 (5%)
Query: 723 RLKVFYEEELDVQLVLFDEVLDHVLRIDRIFRQPQGHLLLIGVSGAGKTTLSRFVAFMNG 782
++ + + E L + R + +QP +LL G SGAGKTT+ R
Sbjct: 2 EIQDYTDSEFKH---ALARNLRSLTRGKKSSKQPIA-ILLGGQSGAGKTTIHRIKQKEFQ 57
Query: 783 LSVFQIRA 790
++ I
Sbjct: 58 GNIVIIDG 65
>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A
{Saccharomyces cerevisiae} PDB: 3p9e_f*
Length = 546
Score = 31.4 bits (72), Expect = 3.0
Identities = 11/88 (12%), Positives = 29/88 (32%), Gaps = 13/88 (14%)
Query: 1005 LDFINHFVKLYREKCSELEEQQLHLNVGL----GKIAETVEQ--VEEMQKSLAVKSQELQ 1058
D ++ + ++ + ++ VG+ G + + + S V +
Sbjct: 464 FDPLDVLAMV-EDELDDAQDSDETRYVGVDLNIGDSCDPTIEGIWD----SYRVLRNAIT 518
Query: 1059 SKNEAANLKLK--EMIKDQQEAEKRKVQ 1084
A+ L E+++ + K Q
Sbjct: 519 GATGIASNLLLCDELLRAGRSTLKETPQ 546
>1j8b_A YBAB; hypothetical protein, structural genomics, structure function
project, S2F, unknown function; HET: MSE; 1.75A
{Haemophilus influenzae RD} SCOP: d.222.1.1 PDB: 1pug_A
Length = 112
Score = 29.6 bits (67), Expect = 3.0
Identities = 23/124 (18%), Positives = 50/124 (40%), Gaps = 36/124 (29%)
Query: 1032 GLGKIAETVEQVEEMQKSLAVKSQELQSKNEAANLKLKEMIKDQQEAE------------ 1079
G G + ++Q ++MQ+ + K QE ++ ++ + E
Sbjct: 6 GKGGLGGLMKQAQQMQEKMQ-KMQE----------EIAQL---EVTGESGAGLVKITING 51
Query: 1080 KRKVQSQDIQAEIEKQTVEIAQKRVFVMEDLAQVEPAVMDAQQAVKEIKKQQLVELRS-M 1138
+ DI + + E+ +EDL + A DA + +E++K+++ + + M
Sbjct: 52 AHNCRRIDIDPSLMEDDKEM-------LEDL--IAAAFNDAVRRAEELQKEKMASVTAGM 102
Query: 1139 ANPP 1142
PP
Sbjct: 103 PLPP 106
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET:
ADP; 2.05A {Geobacillus stearothermophilus} PDB:
2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Length = 263
Score = 31.0 bits (71), Expect = 3.1
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 11/47 (23%)
Query: 48 MVGPSGSGKSTAWKVLLK---ALERYEG----VEGVAHIIDPKAISK 87
++GPSGSGKST L+ LE ++ ++G+ ++K
Sbjct: 55 VIGPSGSGKST----FLRCLNLLEDFDEGEIIIDGINLKAKDTNLNK 97
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin
assembly, protein binding; 2.55A {Homo sapiens} PDB:
2z6e_A
Length = 483
Score = 31.4 bits (71), Expect = 3.1
Identities = 16/92 (17%), Positives = 34/92 (36%), Gaps = 1/92 (1%)
Query: 1040 VEQVEEMQKSLAVKSQELQSKNEAANLKLKEMIKDQQEAEKRKVQSQDIQAEIEKQTVEI 1099
+ VE S+ ++EL+ +AA + + E+ K+ + + Q +
Sbjct: 266 ITIVENKYPSVLNLNEELRDIPQAAKVNMTELDKEISTLRSGLKAVETELEYQKSQPPQP 325
Query: 1100 AQKRVFVMED-LAQVEPAVMDAQQAVKEIKKQ 1130
K V V+ + + D + + E K
Sbjct: 326 GDKFVSVVSQFITVASFSFSDVEDLLAEAKDL 357
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A
{Homo sapiens}
Length = 273
Score = 30.9 bits (69), Expect = 3.1
Identities = 16/114 (14%), Positives = 44/114 (38%), Gaps = 4/114 (3%)
Query: 1021 ELEEQQLHLNVGLGKIAETVEQ-VEEMQKSLAVKSQELQSKNEAANLKLKEMIKDQQEAE 1079
+ + L + ++ +E++ + +EL+ + + K I E
Sbjct: 78 YAQRMERVLRENADSLQASLRPHADELKAKIDQNVEELKGRLTPYADEFKVKIDQTVEEL 137
Query: 1080 KRKVQS--QDIQAEIEKQTVEIAQKRVFVMEDL-AQVEPAVMDAQQAVKEIKKQ 1130
+R + QD Q ++ Q + + E+L A++ + + +Q + + +
Sbjct: 138 RRSLAPYAQDTQEKLNHQLEGLTFQMKKNAEELKARISASAEELRQRLAPLAED 191
Score = 30.5 bits (68), Expect = 4.6
Identities = 13/118 (11%), Positives = 49/118 (41%), Gaps = 6/118 (5%)
Query: 1020 SELEEQQLHLNVGLGKIAETVEQ-VEEMQKSLAVKSQELQSKNEAANLKLKEMIKDQQEA 1078
++ Q LN L + +++ EE++ ++ ++EL+ + ++ ++ E
Sbjct: 143 PYAQDTQEKLNHQLEGLTFQMKKNAEELKARISASAEELRQRLAPLAEDVRGNLRGNTEG 202
Query: 1079 EKRKVQSQDIQAEIEKQTVEIAQKRVFVMEDLAQVEPAVMDAQQAVKEIKKQQLVELR 1136
++ + ++ +++Q E ++ V A++ + +++ ++
Sbjct: 203 LQKSL--AELGGHLDQQVEEFRRR---VEPYGENFNKALVQQMEQLRQKLGPHAGDVE 255
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP,
replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP:
a.80.1.1 c.37.1.20
Length = 327
Score = 31.2 bits (71), Expect = 3.2
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 419 LVLCGPPGSGKTMTLLSALRAL 440
L+ GPPG GKT L+ R L
Sbjct: 49 LLFAGPPGVGKTTAALALAREL 70
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI,
protein structure initiative; 2.05A {Escherichia coli}
SCOP: c.37.1.2
Length = 173
Score = 30.2 bits (69), Expect = 3.3
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 414 AEHKPLVLCGPPGSGKT 430
AE + + L GP G+GK+
Sbjct: 2 AEKRNIFLVGPMGAGKS 18
>3b8m_A Ferric enterobactin (enterochelin) transport; WZZ, FEPE, bacterial
polysaccharide CO-polymerase, metal transport,
biosynthetic protein; 2.70A {Escherichia coli} SCOP:
d.58.60.1 PDB: 3b8n_A 4e2l_A
Length = 280
Score = 30.8 bits (69), Expect = 3.3
Identities = 16/87 (18%), Positives = 30/87 (34%), Gaps = 4/87 (4%)
Query: 1250 VQASENKAKGEETKDLITQLEKSIASYKDEYAQLIAQATAIKTDLDNVQAKFYEYAQLIA 1309
+ E +++ +LE K++ AQ + + + Y+ IA
Sbjct: 141 IDYISALVVKESIENVRNKLEIKTQFEKEKLAQDRIKMKNQL----DANIQRLNYSLDIA 196
Query: 1310 QATAIKTDLDNVQAKVERSMALLKSLG 1336
A IK + + V+ SLG
Sbjct: 197 NAAGIKKPVYSNGQAVKDDPDFSISLG 223
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA
replication, clamp loader, AAA+ ATP ATP-binding,
nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus
fulgidus} PDB: 2chv_A
Length = 319
Score = 30.8 bits (70), Expect = 3.4
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 419 LVLCGPPGSGKTMTLLSALRAL 440
L+ GPPG+GKT T ++ R L
Sbjct: 41 LLFSGPPGTGKTATAIALARDL 62
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA,
national project on structural and functional analyses;
2.61A {Homo sapiens} SCOP: a.238.1.4
Length = 305
Score = 30.8 bits (69), Expect = 3.5
Identities = 18/129 (13%), Positives = 47/129 (36%), Gaps = 6/129 (4%)
Query: 1013 KLYREKCSELEEQQLHLNVGLGKIAETVEQVEEMQKSLAVKSQELQSKNEAANLKLKEMI 1072
+ + C E + Q + I T VE+ ++ ++ Q + + L++
Sbjct: 144 RRFERDCKEADRAQQYFEKMDADINVTKADVEKARQQAQIRHQMAEDSKADYSSILQKFN 203
Query: 1073 KDQQEAEKRKVQS-----QDIQAEIEKQTVEIAQKRVFVMEDLAQVEPAVMDA-QQAVKE 1126
+Q E + + Q+++ + E + V + + +D +A +
Sbjct: 204 HEQHEYYHTHIPNIFQKIQEMEERRIVRMGESMKTYAEVDRQVIPIIGKCLDGIVKAAES 263
Query: 1127 IKKQQLVEL 1135
I ++ +L
Sbjct: 264 IDQKNDSQL 272
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I
ABC type importer, methionine uptake transporter,
membrane protein; HET: ADP; 2.90A {Escherichia coli}
PDB: 3tuj_C 3tuz_C* 3dhw_C
Length = 366
Score = 30.7 bits (70), Expect = 3.5
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 19/62 (30%)
Query: 725 KVFYEEELDVQLVLFDEVLDHV-LRIDR--IFRQPQGHLLLIGVSGAGKTTLSRFVAFMN 781
KVF++ +Q L++V L + I+ G +IG SGAGK+TL R V N
Sbjct: 32 KVFHQGTRTIQ------ALNNVSLHVPAGQIY----G---VIGASGAGKSTLIRCV---N 75
Query: 782 GL 783
L
Sbjct: 76 LL 77
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A
{Homo sapiens}
Length = 274
Score = 30.6 bits (70), Expect = 3.5
Identities = 19/41 (46%), Positives = 21/41 (51%), Gaps = 6/41 (14%)
Query: 421 LCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTPELLLK 461
L GPPG GKT+ L A+ E LNF S PELL
Sbjct: 49 LAGPPGCGKTL-LAKAVAN----E-SGLNFISVKGPELLNM 83
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter,
ABCB6, nucleotide binding domain, heme BIOS transport
protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A*
3nhb_A*
Length = 306
Score = 30.7 bits (70), Expect = 3.6
Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 5/28 (17%)
Query: 49 VGPSGSGKSTAWKVLLKALER-YEGVEG 75
VGPSG+GKST +L+ L R Y+ G
Sbjct: 86 VGPSGAGKST----ILRLLFRFYDISSG 109
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding
protein; structural genomics; 1.70A {Aquifex aeolicus}
PDB: 2pcl_A
Length = 224
Score = 30.5 bits (70), Expect = 3.7
Identities = 8/10 (80%), Positives = 9/10 (90%)
Query: 49 VGPSGSGKST 58
+G SGSGKST
Sbjct: 36 IGASGSGKST 45
Score = 30.2 bits (69), Expect = 5.1
Identities = 29/128 (22%), Positives = 44/128 (34%), Gaps = 52/128 (40%)
Query: 741 EVLDHV-LRIDRIFRQPQGHLLLI-GVSGAGKTTL----------SRFVAFMNGLSVFQI 788
E+L + L + + G + I G SG+GK+TL + F+ G V
Sbjct: 18 EILKGISLSVKK------GEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEV--- 68
Query: 789 RAHNKYTGADFDEDLRTVLRRSGCKNEKIAF------LLDESNVLESGFLERMNTLLANG 842
+E ++LR N K+ F L+ E LE N
Sbjct: 69 --------DYTNEKELSLLR-----NRKLGFVFQFHYLIPELTALE------------NV 103
Query: 843 EIPGLFEG 850
+P L G
Sbjct: 104 IVPMLKMG 111
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide,
hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP:
a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Length = 324
Score = 30.6 bits (70), Expect = 3.7
Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 30/71 (42%)
Query: 716 LREYV-QARLKVFYEEELDVQLVLF-------DEVLDHVLRIDRIFRQPQGHLLLIGVSG 767
L EY+ Q RLK ++L V + E L+H+L L G G
Sbjct: 11 LDEYIGQERLK----QKLRV----YLEAAKARKEPLEHLL--------------LFGPPG 48
Query: 768 AGKTTLSRFVA 778
GKTTL+ +A
Sbjct: 49 LGKTTLAHVIA 59
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane,
membrane, transmembrane, transport, ATP- binding,
hydrolase, nucleotide-binding, periplasm; HET: 1PE;
2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Length = 249
Score = 30.6 bits (70), Expect = 3.8
Identities = 10/21 (47%), Positives = 13/21 (61%), Gaps = 4/21 (19%)
Query: 49 VGPSGSGKSTAWKVLLKALER 69
VGP+G+GKST LL +
Sbjct: 32 VGPNGAGKST----LLARMAG 48
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase,
nucleotide excision repair,; 2.20A {Thermoplasma
acidophilum} PDB: 2vsf_A*
Length = 620
Score = 31.2 bits (71), Expect = 3.8
Identities = 11/50 (22%), Positives = 20/50 (40%)
Query: 409 LYTWLAEHKPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTPEL 458
L + L + + L P GSGKT+ L + + + + T +
Sbjct: 15 LRSSLQKSYGVALESPTGSGKTIMALKSALQYSSERKLKVLYLVRTNSQE 64
>3tif_A Uncharacterized ABC transporter ATP-binding prote;
nucleotide-binding domain, ABC transporter ATPase; HET:
ADP; 1.80A {Methanocaldococcus jannaschii dsm
2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Length = 235
Score = 30.6 bits (70), Expect = 3.8
Identities = 9/10 (90%), Positives = 10/10 (100%)
Query: 49 VGPSGSGKST 58
+GPSGSGKST
Sbjct: 37 MGPSGSGKST 46
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase,
winged-helix domain, ATP hydrolysis, walker A, walker B,
sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga
maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A*
1in8_A* 1in7_A* 1j7k_A*
Length = 334
Score = 30.6 bits (70), Expect = 4.0
Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 30/71 (42%)
Query: 716 LREYV-QARLKVFYEEELDVQLVLF-------DEVLDHVLRIDRIFRQPQGHLLLIGVSG 767
L E++ Q +K ++L + EVLDHVL L G G
Sbjct: 24 LDEFIGQENVK----KKLSL----ALEAAKMRGEVLDHVL--------------LAGPPG 61
Query: 768 AGKTTLSRFVA 778
GKTTL+ +A
Sbjct: 62 LGKTTLAHIIA 72
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA
repair, ABC ATPase, at cassette, DNA damage, DNA
excision; HET: ADP; 3.20A {Geobacillus
stearothermophilus} PDB: 3uwx_A
Length = 972
Score = 30.9 bits (71), Expect = 4.1
Identities = 25/82 (30%), Positives = 33/82 (40%), Gaps = 26/82 (31%)
Query: 45 GLMMV--GPSGSGKSTA-----WKVLLKALER-------YEGVEGVAHI-----IDPKAI 85
G + G SGSGKST +K L + L R + + G+ H+ ID I
Sbjct: 650 GTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPI 709
Query: 86 -----SKEALY-GVLDPNTREW 101
S A Y GV D R+
Sbjct: 710 GRTPRSNPATYTGVFDD-IRDV 730
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken
structural genomics/proteomics initiative, RSGI,
structural genomics, binding; 1.70A {Thermus
thermophilus} PDB: 2d2f_A*
Length = 250
Score = 30.6 bits (70), Expect = 4.3
Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 9/35 (25%)
Query: 44 HGLMMVGPSGSGKSTAWKVLLKAL---ERYEGVEG 75
H LM GP+G+GKST L K L Y G
Sbjct: 32 HALM--GPNGAGKST----LGKILAGDPEYTVERG 60
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair,
nucleotide excision repai hydrolase-DNA complex; HET:
DNA; 2.90A {Thermotoga maritima}
Length = 916
Score = 30.9 bits (71), Expect = 4.4
Identities = 22/82 (26%), Positives = 32/82 (39%), Gaps = 26/82 (31%)
Query: 45 GLMMV--GPSGSGKSTA-----WKVLLKALER-------YEGVEGVAHI-----IDPKAI 85
G+ + G SGSGKS+ + L+ L + ++ +EG +I ID I
Sbjct: 610 GVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPI 669
Query: 86 -----SKEALY-GVLDPNTREW 101
S A Y V D R
Sbjct: 670 GRTPRSNPATYTKVFDE-IRSL 690
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD,
CDC48, ATP-binding, lipid-binding, nucle binding,
nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus
musculus}
Length = 301
Score = 30.3 bits (69), Expect = 4.5
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 421 LCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTPELLLK 461
GPPG GKT+ A +A+ + NF S PELL
Sbjct: 54 FYGPPGCGKTLL---A-KAIANE--CQANFISIKGPELLTM 88
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP;
1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Length = 262
Score = 30.2 bits (69), Expect = 4.6
Identities = 8/11 (72%), Positives = 10/11 (90%)
Query: 48 MVGPSGSGKST 58
++G SGSGKST
Sbjct: 37 IIGSSGSGKST 47
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair;
3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Length = 993
Score = 31.0 bits (71), Expect = 4.6
Identities = 24/82 (29%), Positives = 30/82 (36%), Gaps = 26/82 (31%)
Query: 45 GLMMV--GPSGSGKSTA-----WKVLLKALER-------YEGVEGVAHI-----IDPKAI 85
G++ G SGSGKST VL L + V G+ ++ ID I
Sbjct: 668 GVLTSVTGVSGSGKSTLVNDILAAVLANRLNGARQVPGRHTRVTGLDYLDKLVRIDQSPI 727
Query: 86 -----SKEALY-GVLDPNTREW 101
S A Y GV D R
Sbjct: 728 GRTPRSNPATYTGVFDK-IRTL 748
>1e8c_A UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate
ligase; peptidoglycan biosynthesis; HET: KCX UAG API;
2.00A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1
c.72.2.1
Length = 498
Score = 30.6 bits (70), Expect = 4.7
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 750 DRIFRQPQGHLLLIGVSG-AGKTTLSRFVAFM 780
R + +P +L L+GV+G GKTT ++ +A
Sbjct: 98 GRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQW 129
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster,
ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding;
HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Length = 267
Score = 30.2 bits (69), Expect = 4.8
Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 9/35 (25%)
Query: 44 HGLMMVGPSGSGKSTAWKVLLKAL---ERYEGVEG 75
H +M GP+GSGKST L L E YE G
Sbjct: 49 HAIM--GPNGSGKST----LSATLAGREDYEVTGG 77
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography,
emerald biostructures, ATP-binding, cytoplasm,
nucleotide-binding; HET: 5GP; 1.95A {Anaplasma
phagocytophilum}
Length = 231
Score = 30.2 bits (69), Expect = 4.9
Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Query: 43 NHGLMMV--GPSGSGKSTAWKVLLKA 66
+ G+++V PSG GK+T LL+
Sbjct: 25 SVGVILVLSSPSGCGKTTVANKLLEK 50
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation,
cytoplasm, HOST- virus interaction, nucleotide-binding,
nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens}
PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A*
1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C*
3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C*
...
Length = 221
Score = 30.0 bits (68), Expect = 4.9
Identities = 9/19 (47%), Positives = 12/19 (63%), Gaps = 1/19 (5%)
Query: 760 LLLIGVSGAGKTTL-SRFV 777
L+L+G G GKTT R +
Sbjct: 18 LVLVGDGGTGKTTFVKRHL 36
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; HET: ANP; 3.70A {Salmonella
typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A*
3b5z_A* 3b5w_A
Length = 582
Score = 30.6 bits (70), Expect = 4.9
Identities = 9/10 (90%), Positives = 9/10 (90%)
Query: 49 VGPSGSGKST 58
VG SGSGKST
Sbjct: 375 VGRSGSGKST 384
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP;
2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB:
3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A*
3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Length = 525
Score = 30.7 bits (69), Expect = 5.0
Identities = 15/100 (15%), Positives = 33/100 (33%), Gaps = 20/100 (20%)
Query: 47 MMVGPSGSGKST-AWKVLLKALERYEGV------EGVAHI--------IDPKAISKEALY 91
+ G +G+GK+ + + A E E A + +D + + ++ L
Sbjct: 285 LATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLL 344
Query: 92 GVLDPNTREWTDGLFTHILRRIIDNVRGEISKRQWIIFDG 131
++ I++ I++ K I D
Sbjct: 345 KIVCAYPESAGLEDHLQIIKSEINDF-----KPARIAIDS 379
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support,
cytosolic protein; 3.00A {Homo sapiens}
Length = 129
Score = 29.0 bits (66), Expect = 5.1
Identities = 24/122 (19%), Positives = 49/122 (40%), Gaps = 32/122 (26%)
Query: 1041 EQVEEMQKSLAVKSQELQ-SKNEAANLKLKEMIKDQQEAEKRKVQSQDIQAEIEKQTVEI 1099
+ EE+Q++ +L+ +K+E + + R +Q + + K+
Sbjct: 15 TKYEELQQTAGRHGDDLRNTKHEISEM-------------NRMIQRLRAEIDNVKKQCAN 61
Query: 1100 AQKRVFVMEDLAQVEPAVMDAQQAVKEIKKQQLVELRS-MA----------NPPSVVKLA 1148
Q + E + E A+ DA+ + E+ ++ L + + MA N KLA
Sbjct: 62 LQNAIADAEQ--RGELALKDARNKLAEL-EEALQKAKQDMARLLREYQELMN----TKLA 114
Query: 1149 LE 1150
L+
Sbjct: 115 LD 116
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain,
aminoacyl-tRNA synthetase, ATP-binding, cytoplasm,
ligase, nucleotide-binding; 3.20A {Archaeoglobus
fulgidus}
Length = 171
Score = 29.5 bits (67), Expect = 5.1
Identities = 12/61 (19%), Positives = 24/61 (39%), Gaps = 7/61 (11%)
Query: 1305 AQLIAQATAIKTDLDNVQAKVERSMALLKSLGIERERWEATSETFRSQMATIIGDVLLSS 1364
L ++ ++ + + VER K +E E +S +A + D+L+
Sbjct: 14 RLLREASSILRVEPAKLPKTVERFFEEWKDQ--RKE-----IERLKSVIADLWADILMER 66
Query: 1365 A 1365
A
Sbjct: 67 A 67
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport,
maltose uptake and regulation, sugar binding protein;
1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3
c.37.1.12 PDB: 2d62_A
Length = 372
Score = 30.3 bits (69), Expect = 5.2
Identities = 7/13 (53%), Positives = 12/13 (92%)
Query: 46 LMMVGPSGSGKST 58
++++GPSG GK+T
Sbjct: 32 MILLGPSGCGKTT 44
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer,
structural genomics; HET: ADP; 2.00A {Pyrococcus
horikoshii}
Length = 247
Score = 30.0 bits (68), Expect = 5.2
Identities = 8/20 (40%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Query: 756 PQGHLLLI-GVSGAGKTTLS 774
P+ +++L+ G G GKT S
Sbjct: 21 PERNVVLLSGGPGTGKTIFS 40
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat
ATP binding, chloroplast, transferase; 2.35A
{Arabidopsis thaliana}
Length = 250
Score = 30.1 bits (68), Expect = 5.3
Identities = 13/59 (22%), Positives = 21/59 (35%), Gaps = 1/59 (1%)
Query: 372 EWVPWSNKVPQIEVETQKVAASDVVVPTLDTVRHESLLYTWLAEHKPLVLCGPPGSGKT 430
S+K +ET + S + + +L + + L G GSGKT
Sbjct: 5 RLRSVSDKNSSALLETGSLLHSPFDEEQQILKKKAEEVKPYL-NGRSMYLVGMMGSGKT 62
>1v89_A Hypothetical protein KIAA0053; pleckstrin homology domain,
phosphatidylinositol binding, structural genomics; NMR
{Homo sapiens} SCOP: b.55.1.1
Length = 118
Score = 28.9 bits (65), Expect = 5.3
Identities = 8/39 (20%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 603 ELYLASQEKFTQDMQPHYVY--SPREMTRWVRGICEAIR 639
E+ AS ++ + + S EM WV+ +
Sbjct: 74 EIIPASWDQNRMGQDSYVLMASSQAEMEEWVKFLRRVAG 112
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; 5.50A {Vibrio cholerae}
Length = 582
Score = 30.6 bits (70), Expect = 5.5
Identities = 9/10 (90%), Positives = 9/10 (90%)
Query: 49 VGPSGSGKST 58
VG SGSGKST
Sbjct: 375 VGRSGSGKST 384
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable
holliday junction DNA helicase; HET: ADP; 2.69A
{Campylobacter jejuni subsp}
Length = 338
Score = 30.2 bits (69), Expect = 5.5
Identities = 18/71 (25%), Positives = 28/71 (39%), Gaps = 30/71 (42%)
Query: 716 LREYV-QARLKVFYEEELDVQLVLF-------DEVLDHVLRIDRIFRQPQGHLLLIGVSG 767
Y+ Q +K + L+V F +E LDH+L G +G
Sbjct: 28 FDGYIGQESIK----KNLNV----FIAAAKKRNECLDHIL--------------FSGPAG 65
Query: 768 AGKTTLSRFVA 778
GKTTL+ ++
Sbjct: 66 LGKTTLANIIS 76
>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain,
signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1
Length = 108
Score = 28.6 bits (64), Expect = 5.6
Identities = 9/31 (29%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 613 TQDMQPHYVY--SPREMTRWVRGICEAIRPL 641
+QD + + SP E WV I ++ L
Sbjct: 77 SQDRRTYEFTATSPAEARDWVDQISFLLKDL 107
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Length = 235
Score = 30.0 bits (68), Expect = 5.8
Identities = 9/20 (45%), Positives = 11/20 (55%), Gaps = 1/20 (5%)
Query: 756 PQGHLLLI-GVSGAGKTTLS 774
PQG + + G G GKT S
Sbjct: 21 PQGFFIALTGEPGTGKTIFS 40
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding,
phosphorylation, acetylation, alternative splicing,
coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Length = 418
Score = 30.2 bits (67), Expect = 5.8
Identities = 27/164 (16%), Positives = 71/164 (43%), Gaps = 17/164 (10%)
Query: 952 DFFPSVCSLVSTTPSHRDSVINACVYVHQTLHKANARLSKRGSRTMAITPRHYLDFINHF 1011
DF L+ T H + + VH +++ +L+ + +
Sbjct: 262 DFTILRNMLIRT---HMQDLKDVTNNVHYENYRSR-KLAAVTYNGVDNNKNKGQLTKSPL 317
Query: 1012 VKL---YREKCSELEEQQLHL-NVGLGKIAETVEQVEEMQKSLAVKSQELQSKNEAANLK 1067
++ RE +++++ ++ + V K+ E V+++++ + L + ++++ EA + +
Sbjct: 318 AQMEEERREHVAKMKKMEMEMEQVFEMKVKEKVQKLKDSEAELQRRHEQMKKNLEAQHKE 377
Query: 1068 LK------EMIKDQQEAEKRKVQSQDIQAEIEKQTVEIAQKRVF 1105
L+ E K EA++R ++ Q+ +EK + ++F
Sbjct: 378 LEEKRRQFEDEKANWEAQQRILEQQNSSRTLEKNK---KKGKIF 418
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis,
GDP, GMP, dynamin related, large GTPase family. GMPPNP,
GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1
c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Length = 592
Score = 30.3 bits (67), Expect = 6.0
Identities = 24/175 (13%), Positives = 53/175 (30%), Gaps = 10/175 (5%)
Query: 958 CSLVSTTPSHRDSVINACVYVHQTLHKANARLSKRGSRTMAITPRHYLDFINHFVKLYRE 1017
L S ++ +++ + + + A A++ + AI HY + V+L E
Sbjct: 291 PRLESLVLTYVNAISSGDLPCMENAVLALAQIENSAAVQKAI--AHYEQQMGQKVQLPTE 348
Query: 1018 KCSELEEQQLHLNVGLGKIAETVEQVEEMQKSLAVKSQELQSKNEAANLKLKEMIKDQQE 1077
EL + +E ++ S Q + A K ++ Q +
Sbjct: 349 SLQELLDLHRD--------SEREAIEVFIRSSFKDVDHLFQKELAAQLEKKRDDFCKQNQ 400
Query: 1078 AEKRKVQSQDIQAEIEKQTVEIAQKRVFVMEDLAQVEPAVMDAQQAVKEIKKQQL 1132
S +Q E+ + D ++ E ++ +
Sbjct: 401 EASSDRCSGLLQVIFSPLEEEVKAGIYSKPGGYRLFVQKLQDLKKKYYEEPRKGI 455
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active
transport, sugar uptake and regulation, transport
protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3
b.40.6.3 c.37.1.12 PDB: 1vci_A*
Length = 372
Score = 30.3 bits (69), Expect = 6.0
Identities = 8/13 (61%), Positives = 12/13 (92%)
Query: 46 LMMVGPSGSGKST 58
L+++GPSG GK+T
Sbjct: 40 LVLLGPSGCGKTT 52
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase,
protein-targeting, transport protein; HET: GDP; 1.97A
{Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Length = 328
Score = 29.9 bits (68), Expect = 6.1
Identities = 13/77 (16%), Positives = 37/77 (48%), Gaps = 13/77 (16%)
Query: 709 VPVGTTE-----LREYVQAR-LKVFYEEELDVQLVLFD---EVLDHVLRIDRIFRQPQGH 759
V + + +++ + + +++ ++ ++ + + E+L+ RID I +
Sbjct: 68 VALEVVDALREKIKQKLVGKKVRIGTDKGKIIEEAVKEAVSEILETSRRIDLIEEIRKAE 127
Query: 760 ----LLLIGVSGAGKTT 772
++ +G +G+GKTT
Sbjct: 128 KPYVIMFVGFNGSGKTT 144
>2it1_A 362AA long hypothetical maltose/maltodextrin transport
ATP-binding protein; structural genomics, NPPSFA; 1.94A
{Pyrococcus horikoshii}
Length = 362
Score = 30.3 bits (69), Expect = 6.1
Identities = 9/13 (69%), Positives = 12/13 (92%)
Query: 46 LMMVGPSGSGKST 58
+ ++GPSGSGKST
Sbjct: 32 MALLGPSGSGKST 44
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance
regulator, residues 1193-1427...; CFTR, ABC
transporter, nucleotide binding domain, NBD; HET: B44;
2.70A {Homo sapiens}
Length = 390
Score = 30.1 bits (68), Expect = 6.2
Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 5/43 (11%)
Query: 49 VGPSGSGKSTAWKVLLKALERYEGVEGVAHIIDPKAISKEALY 91
+G +GSGKST LL A R EG ID + L
Sbjct: 53 LGRTGSGKST----LLSAFLRLLNTEGEI-QIDGVSWDSITLE 90
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding,
cell CELL division, hydrolase, membrane, metal-binding;
3.30A {Helicobacter pylori} PDB: 2r65_A*
Length = 268
Score = 29.9 bits (68), Expect = 6.4
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 7/48 (14%)
Query: 754 RQPQGHLLLIGVSGAGKTTLSRFVAFMNGLSVFQIRAHNKYTGADFDE 801
+ P+G +LL+G G GKT L++ VA + F + G+ F E
Sbjct: 42 KIPKG-VLLVGPPGTGKTLLAKAVAGEAHVPFFSM------GGSSFIE 82
>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel,
membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP:
f.46.1.1 PDB: 2v4d_A 1t5e_A
Length = 369
Score = 29.9 bits (68), Expect = 6.4
Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 7/61 (11%)
Query: 1274 ASYKDEYAQLIAQATAIKTDLDNVQAKFYEYAQLIAQATAIKTDLDNVQAKVERSMALLK 1333
A+Y+ +Y AQA L + Q + Y L+A K + A +S A ++
Sbjct: 77 ATYEADYQS--AQAN-----LASTQEQAQRYKLLVADQAVSKQQYADANAAYLQSKAAVE 129
Query: 1334 S 1334
Sbjct: 130 Q 130
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1,
nicotinic acid riboside kinase activity, NAD
biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB:
2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Length = 207
Score = 29.4 bits (66), Expect = 6.5
Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 9/58 (15%)
Query: 416 HKPLV--LCGPPGSGKTMTLLSAL-RALPDMEVVSL-NF----SSATTPELLLKTFDH 465
K + + G SGKT TL L + LP+ V+S +F S T + +D
Sbjct: 19 SKTFIIGISGVTNSGKT-TLAKNLQKHLPNCSVISQDDFFKPESEIETDKNGFLQYDV 75
>1u5f_A SRC-associated adaptor protein; PH domain of SKAP-HOM, artefactual
dimerization induced by V derived sequence, signaling
protein; 1.90A {Mus musculus} SCOP: b.55.1.1 PDB: 1u5g_A
Length = 148
Score = 29.1 bits (65), Expect = 6.6
Identities = 7/37 (18%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 612 FTQDMQPHYVY--SPREMTRWVRGICEAIRPLESLTV 646
D + + SP++ WV+ + ++ L S +
Sbjct: 90 CAPDKRIYQFTAASPKDAEEWVQQLKFILQDLGSDVI 126
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase;
1.90A {Tomato mosaic virus}
Length = 446
Score = 30.2 bits (67), Expect = 6.6
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 420 VLCGPPGSGKTMTLLSALRALPDMEVVS 447
++ G PG GKT +LS + D+ +V
Sbjct: 165 LVDGVPGCGKTKEILSRVNFEEDLILVP 192
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis,
CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA
synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A*
3qo8_A* 3qo5_A
Length = 485
Score = 30.3 bits (69), Expect = 6.6
Identities = 12/64 (18%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Query: 1233 DMLKKVEPLRLELKSLEVQASENKAKGEETKDLITQLEKSIASYKDEYAQLIAQATAIKT 1292
+ ++ +L S++ + + E+ KDLI + EK +E ++I +
Sbjct: 44 KLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEK----LSNEKKEIIEKEAEADK 99
Query: 1293 DLDN 1296
+L +
Sbjct: 100 NLRS 103
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function;
HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Length = 251
Score = 29.9 bits (67), Expect = 6.9
Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
Query: 749 IDRIFRQ--PQGHLLLI-GVSGAGKTTLS 774
D + P+G +L+ G +G GKTT +
Sbjct: 19 FDELIEGGFPEGTTVLLTGGTGTGKTTFA 47
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 30.1 bits (67), Expect = 7.0
Identities = 18/93 (19%), Positives = 42/93 (45%), Gaps = 17/93 (18%)
Query: 1011 FVKLYREKCSELEEQQLHLNVGLGKIAETVEQVEEMQKSLAVKSQELQSKNEAANLKLKE 1070
FV+ +EK +EL+E + L+ E+ + ++K + ++L+ K K
Sbjct: 346 FVQRVKEKEAELKEAEKELH----------EKFDRLKKLHQDEKKKLED-------KKKS 388
Query: 1071 MIKDQQEAEKRKVQSQDIQAEIEKQTVEIAQKR 1103
+ + ++RK ++ +Q++ + KR
Sbjct: 389 LDDEVNAFKQRKTAAELLQSQGSQAGGSQTLKR 421
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein;
HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A*
1e32_A* 1s3s_A* 2pjh_B
Length = 489
Score = 30.1 bits (68), Expect = 7.4
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
Query: 756 PQGHLLLIGVSGAGKTTLSRFVAFMNGLSVFQIRA---HNKYTGADFDEDLRTVLRRSGC 812
P+G +LL G G GKT ++R VA G F I +K G + + +LR +
Sbjct: 238 PRG-ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAG-ESESNLRKAFEEAEK 295
Query: 813 KNEKIAFLLDE 823
I F +DE
Sbjct: 296 NAPAIIF-IDE 305
>1nkw_F 50S ribosomal protein L9; ribosome, large subunit, X- RAY structure,
peptidyl-transferase, peptide bond formation; 3.10A
{Deinococcus radiodurans} SCOP: i.1.1.2 PDB: 1nwx_F*
1nwy_F* 1sm1_F* 1xbp_F* 1pnu_F 1pny_F 1vor_I 1vou_I
1vow_I 1voy_I 1vp0_I
Length = 146
Score = 28.7 bits (65), Expect = 7.5
Identities = 10/84 (11%), Positives = 30/84 (35%), Gaps = 15/84 (17%)
Query: 1032 GLGKIA--ETVEQVEEMQKSLAVKSQELQSKNEAANLKLKEMIKDQQEAEKRK------- 1082
GL A ++ +E +S+ + + + A L + +
Sbjct: 33 GLAVSATRTNMKTLEAQLRSIEKRQAQ---EKAVAE-DLASRLNGVAVELSVRAGEGKIY 88
Query: 1083 --VQSQDIQAEIEKQTVEIAQKRV 1104
V QD+ +++ ++ ++++
Sbjct: 89 GAVTHQDVANSLDQLGFDVDRRKI 112
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid
biosynthesis, P-loop kinase, metal- binding, shikimate
pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis}
SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A*
2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A*
1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A*
3baf_A*
Length = 184
Score = 29.1 bits (66), Expect = 7.6
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 417 KPLVLCGPPGSGKT 430
VL G PGSGK+
Sbjct: 3 PKAVLVGLPGSGKS 16
>3r9v_A Invasin IPAD; type III secretion system, TIP protein, deoxycholate,
cell I; HET: DXC; 1.90A {Shigella flexneri} PDB: 2jaa_A
2j0n_A
Length = 286
Score = 29.9 bits (66), Expect = 7.6
Identities = 15/101 (14%), Positives = 36/101 (35%), Gaps = 5/101 (4%)
Query: 1239 EPLRLELKSLEVQASENKAKGEETKDLITQLEKSIAS----YKDEYAQLIAQATAIKTDL 1294
+ R L S +A + + ++L ++ SI Y Y ++ T + D
Sbjct: 72 KDARELLHSAPKEAELDGDQMISHRELWAKIANSINDINEQYLKVYEHAVSSYTQMYQDF 131
Query: 1295 DNVQAKFYEYAQLIAQ-ATAIKTDLDNVQAKVERSMALLKS 1334
V + + ++K +++++ +E K
Sbjct: 132 SAVLSSLAGWISPGGNDGNSVKLQVNSLKKALEELKEKYKD 172
>3b8o_A Lipopolysaccharide biosynthesis protein WZZE; bacterial
polysaccharide CO-polymerase, inner MEM
lipopolysaccharide biosynthesis, membrane; 2.40A
{Escherichia coli} SCOP: d.58.60.1
Length = 265
Score = 29.7 bits (66), Expect = 7.6
Identities = 21/104 (20%), Positives = 33/104 (31%), Gaps = 8/104 (7%)
Query: 1250 VQASENKAKGEETKDLITQLEKSIASYKDEYAQLIAQATAIKTDLDNVQAKFYEYAQLIA 1309
V + +A +L K + + A AI + + E A IA
Sbjct: 126 VAFASQRAASHLNDELKGAWAARTIQMKAQVKRQEEVAKAIY----DRRMNSIEQALKIA 181
Query: 1310 QATAIKTDLDNVQAKV--ERSMALL--KSLGIERERWEATSETF 1349
+ I +V A+ + M LL L E +A F
Sbjct: 182 EQHNISRSATDVPAEELPDSEMFLLGRPMLQARLENLQAVGPAF 225
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase,
ATP-binding cassette, ATPase, transport protein; 1.45A
{Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB:
1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Length = 353
Score = 29.9 bits (68), Expect = 7.8
Identities = 7/13 (53%), Positives = 11/13 (84%)
Query: 46 LMMVGPSGSGKST 58
++GPSG+GK+T
Sbjct: 34 FGILGPSGAGKTT 46
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral
membrane protein, ATPase, ABC transporter, membrane
transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia
coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A*
3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A*
1q1b_A
Length = 381
Score = 29.8 bits (68), Expect = 7.9
Identities = 9/11 (81%), Positives = 9/11 (81%)
Query: 48 MVGPSGSGKST 58
VGPSG GKST
Sbjct: 34 FVGPSGCGKST 44
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein,
ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus
radiodurans} PDB: 3gp8_A 3gpl_A*
Length = 574
Score = 30.1 bits (68), Expect = 7.9
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 414 AEHKPLVLCGPPGSGKTMTLLSALRALPDM 443
A H+ +VL G PG+GK+ T + +
Sbjct: 202 AGHRLVVLTGGPGTGKSTTTKAVADLAESL 231
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA
replication, clamp loader, AAA+ ATPase, ATP-binding,
nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus
fulgidus}
Length = 226
Score = 29.5 bits (67), Expect = 8.0
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 419 LVLCGPPGSGKTMTLLSALRAL 440
L+ GPPG+GKT T ++ R L
Sbjct: 41 LLFSGPPGTGKTATAIALARDL 62
>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A
{Drosophila melanogaster}
Length = 290
Score = 29.8 bits (66), Expect = 8.0
Identities = 11/83 (13%), Positives = 23/83 (27%)
Query: 1013 KLYREKCSELEEQQLHLNVGLGKIAETVEQVEEMQKSLAVKSQELQSKNEAANLKLKEMI 1072
Y C + + +QV++M + ++Q E + E+
Sbjct: 142 ADYHSACKTERSATNQERNANADSSLSPDQVKKMHDRVQKTKDQVQKCREKYEQAIAEIT 201
Query: 1073 KDQQEAEKRKVQSQDIQAEIEKQ 1095
K + + EK
Sbjct: 202 KYNSVYIEDMTSVFEKCQTFEKT 224
>3khx_A Putative dipeptidase sacol1801; DAPE, metallopeptidase, hydrolase,
metal-bindin metalloprotease, protease; 2.30A
{Staphylococcus aureus} PDB: 3ki9_A 3khz_A
Length = 492
Score = 30.0 bits (67), Expect = 8.2
Identities = 8/84 (9%), Positives = 26/84 (30%), Gaps = 12/84 (14%)
Query: 1260 EETKDLITQLEKSIASYKDEYAQLIAQATAIKTDLDNVQAKFYEYAQLIAQATAIKTDLD 1319
+ + ++ + Y+D+ + AI++ D+ A+A+
Sbjct: 16 PRGSHMASMWKEKVQQYEDQIINDLKGLLAIESVRDD------------AKASEDAPVGP 63
Query: 1320 NVQAKVERSMALLKSLGIERERWE 1343
+ ++ + G +
Sbjct: 64 GPRKALDYMYEIAHRDGFTTHDVD 87
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis,
CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A
{Bacillus subtilis}
Length = 468
Score = 29.9 bits (68), Expect = 8.5
Identities = 21/86 (24%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Query: 1017 EKCSELEEQQLHLNVGLGKIAETVEQVEEMQKSLAVKSQELQSKNEAANLKLKEM-IKDQ 1075
E S++ + L ++ + +++V + +K AV+SQE +AA+L+ E +++Q
Sbjct: 380 EAGSKVRLRSFTTPPNLKELEQKLDEVRK-EKDAAVQSQE---FEKAASLRDTEQRLREQ 435
Query: 1076 QEAEKRKVQSQDIQAEIEKQTVEIAQ 1101
E K+ + + Q E +IA
Sbjct: 436 VEDTKKSWKEKQGQENSEVTVDDIAM 461
>1x05_A Pleckstrin; PH domain, structural genomics, NPPSFA, riken
structural genomics/proteomics initiative, RSGI; NMR
{Homo sapiens} SCOP: b.55.1.1 PDB: 1xx0_A
Length = 129
Score = 28.6 bits (64), Expect = 8.5
Identities = 10/33 (30%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 613 TQDMQPHYVY--SPREMTRWVRGICEAIRPLES 643
T D +++ +P+E T W++ I A R +S
Sbjct: 92 TADEVHYFLQAATPKERTEWIKAIQMASRTGKS 124
>2wtz_A UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-diaminopimelate
ligase; nucleotide-binding, peptidoglycan synthesis,
MURE, C shape; HET: KCX UAG; 3.00A {Mycobacterium
tuberculosis} PDB: 2xja_A*
Length = 535
Score = 29.9 bits (68), Expect = 8.5
Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 750 DRIFRQPQGHLLLIGVSG-AGKTTLSRFVA 778
++ P L +IG++G +GKTT + V
Sbjct: 136 ATVYGHPSERLTVIGITGTSGKTTTTYLVE 165
>2fh5_B SR-beta, signal recognition particle receptor beta subunit;
endomembrane targeting, GTPase, GAP, longin domain,
SEDL, transport protein; HET: GTP; 2.45A {Mus musculus}
SCOP: c.37.1.8 PDB: 2go5_2
Length = 214
Score = 29.3 bits (66), Expect = 8.5
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 754 RQPQGHLLLIGVSGAGKTTL 773
+ Q +L +G+ +GKT L
Sbjct: 4 KSSQRAVLFVGLCDSGKTLL 23
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding,
nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A
{Thermococcus onnurineus}
Length = 604
Score = 29.7 bits (67), Expect = 8.8
Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Query: 730 EELDVQLVLFDEVL--DHVLRIDRI-FRQPQGHLLLIGVSGAGKTTLSRFVA 778
EE++V L D+V+ +H + + + Q + H+LLIG G GK+ L + +A
Sbjct: 31 EEIEVPEKLIDQVIGQEHAVEVIKTAANQKR-HVLLIGEPGTGKSMLGQAMA 81
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport,
alpha and beta proteins (A/B) TM0421, structural
genomics, NPPSFA; 2.11A {Thermotoga maritima}
Length = 359
Score = 29.5 bits (67), Expect = 8.9
Identities = 7/13 (53%), Positives = 11/13 (84%)
Query: 46 LMMVGPSGSGKST 58
+ ++GPSG GK+T
Sbjct: 32 VALLGPSGCGKTT 44
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis,
CELL_cycle regulation, alternative splicing, cell cycle,
cell division; HET: MSE; 2.50A {Homo sapiens}
Length = 78
Score = 27.2 bits (60), Expect = 9.3
Identities = 6/60 (10%), Positives = 25/60 (41%)
Query: 1035 KIAETVEQVEEMQKSLAVKSQELQSKNEAANLKLKEMIKDQQEAEKRKVQSQDIQAEIEK 1094
++ E +++ + +L ++L+ ++ + + ++ E +K + E+
Sbjct: 15 RMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELSS 74
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle
protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Length = 101
Score = 27.9 bits (62), Expect = 9.4
Identities = 27/101 (26%), Positives = 49/101 (48%), Gaps = 12/101 (11%)
Query: 1042 QVEEMQKSLAVKSQELQSKNEAANLKLKEMIKDQQEAEKRKVQSQDIQAEIEKQTVEIAQ 1101
++ ++K K Q L+ E A + ++ D++ AE+R Q +D ++EKQ
Sbjct: 3 HMDAIKK----KMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTED 58
Query: 1102 KRVFVMEDLAQV----EPAVMDAQQAVKEI----KKQQLVE 1134
R V+E+L + A +A +A E+ ++ QLVE
Sbjct: 59 SRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRIQLVE 99
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation,
nucleotide metab transferase; HET: C5P; 1.50A {Thermus
thermophilus} PDB: 3akc_A* 3akd_A*
Length = 208
Score = 28.9 bits (66), Expect = 9.5
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 50 GPSGSGKSTAWKVLLKAL 67
GPS SGKS+ + + AL
Sbjct: 9 GPSASGKSSVARRVAAAL 26
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein
translocation, GTP-binding, nucleotide-binding, protein
transport; 1.75A {Arabidopsis thaliana}
Length = 302
Score = 29.4 bits (67), Expect = 9.6
Identities = 13/66 (19%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
Query: 713 TTELREYVQARLKVF-YEEELDVQLVLFDEVLDHVLRIDRIFRQPQGH-----LLLIGVS 766
T + E ++ + + +++ L + VL+ + + + G ++++GV+
Sbjct: 50 TVRIVERLREDIMSGKLKSGSEIKDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVN 109
Query: 767 GAGKTT 772
G GKTT
Sbjct: 110 GGGKTT 115
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural
changes, replication; 1.95A {Escherichia coli} SCOP:
c.37.1.11 PDB: 1g8y_A 1olo_A
Length = 279
Score = 29.3 bits (65), Expect = 9.6
Identities = 7/32 (21%), Positives = 12/32 (37%)
Query: 409 LYTWLAEHKPLVLCGPPGSGKTMTLLSALRAL 440
+ + L P G+GK+M L +
Sbjct: 23 VLPNMVAGTVGALVSPGGAGKSMLALQLAAQI 54
>2r44_A Uncharacterized protein; putative ATPase, structural genomics,
joint center for struc genomics, JCSG; HET: MSE PG4;
2.00A {Cytophaga hutchinsonii atcc 33406}
Length = 331
Score = 29.4 bits (67), Expect = 9.6
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 757 QGHLLLIGVSGAGKTTLSRFVA 778
GH+LL GV G KT +A
Sbjct: 46 GGHILLEGVPGLAKTLSVNTLA 67
>3r20_A Cytidylate kinase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, ADP,
DCMP, D transferase; 2.00A {Mycobacterium smegmatis}
PDB: 3r8c_A 4die_A*
Length = 233
Score = 29.4 bits (67), Expect = 9.7
Identities = 9/18 (50%), Positives = 14/18 (77%)
Query: 50 GPSGSGKSTAWKVLLKAL 67
GP+G+GKS+ + L +AL
Sbjct: 16 GPAGTGKSSVSRGLARAL 33
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase,
hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB:
2oaq_1
Length = 511
Score = 29.7 bits (67), Expect = 9.7
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 9/63 (14%)
Query: 402 TVRHESLLYTWLA--EHKPLVLCGPPGSGKTMTLLSALRAL--PDMEVVSLNFSSATTPE 457
TV L Y WLA ++ G SGKT T L+A+ PD +VVS+ T E
Sbjct: 244 TVPSGVLAYLWLAIEHKFSAIVVGETASGKT-TTLNAIMMFIPPDAKVVSIE----DTRE 298
Query: 458 LLL 460
+ L
Sbjct: 299 IKL 301
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein
transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Length = 320
Score = 29.5 bits (67), Expect = 10.0
Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 10/60 (16%)
Query: 713 TTELREYVQARLKVFYEEELDVQLVLFDEVLDHVLRIDRIFRQPQGHLLLIGVSGAGKTT 772
+++ + L Y + + ++ L I +L+GV+G GKTT
Sbjct: 71 FENIKDALVESLYQAYTDNDWTNKKYRIDFKENRLNI----------FMLVGVNGTGKTT 120
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.134 0.393
Gapped
Lambda K H
0.267 0.0529 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 25,021,585
Number of extensions: 1575820
Number of successful extensions: 5328
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5194
Number of HSP's successfully gapped: 458
Length of query: 1614
Length of database: 6,701,793
Length adjustment: 106
Effective length of query: 1508
Effective length of database: 3,742,167
Effective search space: 5643187836
Effective search space used: 5643187836
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (28.9 bits)