RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy568
(1614 letters)
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus
thermophilus [TaxId: 274]}
Length = 387
Score = 41.2 bits (96), Expect = 8e-04
Identities = 69/388 (17%), Positives = 140/388 (36%), Gaps = 61/388 (15%)
Query: 740 DEVLDHVLRIDRIFRQPQGHLLLIGVSGAGKTTLSRFVA--FMNG-------------LS 784
DE + V++I + R+ + + +LIG G GKT + +A + G L
Sbjct: 28 DEEIRRVIQI--LLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQ 85
Query: 785 VFQIRAHNKYTGADFDEDLRTVLRRSGCKNEKIAFLLDESNVLESGFLER-------MNT 837
+ + A KY G + + + E I F+ + V+ +G E +
Sbjct: 86 MGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKP 145
Query: 838 LLANGEIP--GLFEGDEYTTLMTQCKEGAQREGLMLDSNEELYKWFTQQVMKNLHVVFTM 895
LA GE+ G DEY + K+ A L + F + V T+
Sbjct: 146 ALARGELRLIGATTLDEYREIE---KDPA------------LERRFQPVYVDEPTVEETI 190
Query: 896 NPSSEGLKDRAATSPALFNRCVLNWFGDWSDTALYQVAKEFTSKIDLDGPQNWKAPDFFP 955
+ GLK+ + ++ SD+A+ A + + + KA D
Sbjct: 191 S-ILRGLKE----------KYEVHHGVRISDSAIIAAA-TLSHRYITERRLPDKAIDLID 238
Query: 956 SVCSLVSTTPSHRDSVINACVYVHQTLHKANARLSKRGSRTMAITPRHYLDFINHFVKLY 1015
+ + I+A L L K L I +
Sbjct: 239 EAAARLRMALESAPEEIDALERKKLQLEIEREALKKEKDPDSQ----ERLKAIEAEIAKL 294
Query: 1016 REKCSELEEQQLHLNVGLGKIAETVEQVEEMQKSL--AVKSQELQSKNEAANLKLKEMIK 1073
E+ ++L + L K+ E +++E+++ + A + +L E +L ++
Sbjct: 295 TEEIAKLRAEWEREREILRKLREAQHRLDEVRREIELAERQYDLNRAAELRYGELPKLEA 354
Query: 1074 DQQEAEKRKVQSQDIQAEIEKQTVEIAQ 1101
+ + ++ ++ ++ E+ ++ +IA+
Sbjct: 355 EVEALSEKLRGARFVRLEVTEE--DIAE 380
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase
III, N-domain {Escherichia coli [TaxId: 562]}
Length = 207
Score = 38.6 bits (88), Expect = 0.003
Identities = 9/43 (20%), Positives = 15/43 (34%), Gaps = 4/43 (9%)
Query: 28 PWMEKVLQ----LYQISNLNHGLMMVGPSGSGKSTAWKVLLKA 66
PW+ + YQ +H L++ G G L +
Sbjct: 5 PWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRY 47
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum
aerophilum [TaxId: 13773]}
Length = 276
Score = 38.2 bits (87), Expect = 0.005
Identities = 22/195 (11%), Positives = 52/195 (26%), Gaps = 3/195 (1%)
Query: 36 LYQISNLNHGLMMVGPSGSGKSTAWKVLLKALERYEGVEGVAHIIDPKAISKEALYGVLD 95
L + ++G G+GK+ + L + + V + +
Sbjct: 36 LRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIAR 95
Query: 96 PNTREWTDGLFTHILRRIIDNVRGEISKRQWIIFDGDVDPEWVENLNSVLDDNKLLTLPN 155
+ + + + D + L++ + +
Sbjct: 96 SLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLG 155
Query: 156 GERLSLPPNIRIMFEVQDLKYATLATVSRCGMIWFSEDVLSTEMIFENYLSRLRNIALDD 215
R++L + L +T G + + IF+ L R + +
Sbjct: 156 AFRIALVI---VGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEG 212
Query: 216 IDDDSSLLITVDATG 230
+ L + D TG
Sbjct: 213 SYSEDILQMIADITG 227
Score = 35.6 bits (80), Expect = 0.042
Identities = 28/172 (16%), Positives = 46/172 (26%), Gaps = 8/172 (4%)
Query: 417 KPLVLCGPPGSGKTMTL---LSALRALPDMEVVSLNFSSATTPELLLKTFDHYCEYRKTP 473
L G PG+GKT+TL + V +N ++
Sbjct: 44 PRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPR 103
Query: 474 NGVILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLER 533
G+ S + LV E +L ++ R + R
Sbjct: 104 RGL--SRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEAD---KLGAFR 158
Query: 534 IQCVGACNPPTDPGRKPLSHRFLRHVPVIYVDYPGETSLKQIYGTFSRAMLR 585
I V + S R + VI + + I ++A L
Sbjct: 159 IALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLA 210
Score = 29.8 bits (65), Expect = 2.6
Identities = 8/40 (20%), Positives = 13/40 (32%)
Query: 739 FDEVLDHVLRIDRIFRQPQGHLLLIGVSGAGKTTLSRFVA 778
++ + R L+G G GKT R +
Sbjct: 25 LQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLW 64
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 176
Score = 36.1 bits (82), Expect = 0.014
Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 7/97 (7%)
Query: 46 LMMVGPSGSGKSTAWKVLLKALERYEGVEGVAHIIDPKAISKEALYGVLDPNTREWTDGL 105
L++ G GSGKST + +AL GV V + +G +DP + +
Sbjct: 7 LLLSGHPGSGKST----IAEALANLPGVPKV--HFHSDDLWGYIKHGRIDPWLPQ-SHQQ 59
Query: 106 FTHILRRIIDNVRGEISKRQWIIFDGDVDPEWVENLN 142
I++ D + ++I DG V P+W+
Sbjct: 60 NRMIMQIAADVAGRYAKEGYFVILDGVVRPDWLPAFT 96
Score = 34.2 bits (77), Expect = 0.067
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 760 LLLIGVSGAGKTTLSRFVAFMNGLSVFQIRAHN 792
LLL G G+GK+T++ +A + G+ + +
Sbjct: 7 LLLSGHPGSGKSTIAEALANLPGVPKVHFHSDD 39
Score = 31.1 bits (69), Expect = 0.70
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 417 KPLVLCGPPGSGKTMTLLSALRALPDMEVVSLN 449
L+L G PGSGK+ T+ AL LP + V +
Sbjct: 5 NILLLSGHPGSGKS-TIAEALANLPGVPKVHFH 36
>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human
(Homo sapiens) [TaxId: 9606]}
Length = 178
Score = 35.6 bits (81), Expect = 0.019
Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 5/41 (12%)
Query: 416 HKPLVLCGPPGSGKTMTLLSALRA-LPDMEVVSLNFSSATT 455
K LVL G G G+ + + L PD + TT
Sbjct: 3 RKTLVLLGAHGVGRR-HIKNTLITKHPDRFAYPI---PHTT 39
Score = 27.9 bits (61), Expect = 7.1
Identities = 5/20 (25%), Positives = 10/20 (50%)
Query: 46 LMMVGPSGSGKSTAWKVLLK 65
L+++G G G+ L+
Sbjct: 6 LVLLGAHGVGRRHIKNTLIT 25
Score = 27.5 bits (60), Expect = 9.6
Identities = 5/16 (31%), Positives = 9/16 (56%)
Query: 760 LLLIGVSGAGKTTLSR 775
L+L+G G G+ +
Sbjct: 6 LVLLGAHGVGRRHIKN 21
>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 214
Score = 36.0 bits (82), Expect = 0.022
Identities = 37/214 (17%), Positives = 68/214 (31%), Gaps = 19/214 (8%)
Query: 50 GPSGSGKSTAWKVLLKALERYEGVEGVAHIIDPKAISKEALYGVLDPNTREWTDGLFTHI 109
G +GK+T +L K L+ ++ L + H+
Sbjct: 10 GLDRTGKTTQCNILYKKLQP----NCKLLKFPERSTRIGGLINEYLTDDSFQLSDQAIHL 65
Query: 110 LRRIIDNVRGEIS-----KRQWIIFDGDVDPEWVENLNSVLDDNKLLTLPNGERLSLPPN 164
L + + + I+ D V + + L + L P+
Sbjct: 66 LFSANRWEIVDKIKKDLLEGKNIVMDRYVYSGVAYSAAKGTNGMDLDWCLQPDVGLLKPD 125
Query: 165 IRIMFEVQDLKYATLATVSRCGMIWFSEDVLSTEMIFENYLSRLRNIALDDIDDDSSLLI 224
+ + QD+ A S G + E V E + + ++ + +I +
Sbjct: 126 LTLFLSTQDVD--NNAEKSGFGDERY-ETVKFQEKVKQTFM----KLLDKEIRKGDESIT 178
Query: 225 TVDATGKAPDDVLSPALTLQQDVASILSTHFAPD 258
VD T K +V + + Q V +LSTH D
Sbjct: 179 IVDVTNKGIQEVEA---LIWQIVEPVLSTHIDHD 209
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId:
562]}
Length = 171
Score = 35.4 bits (80), Expect = 0.025
Identities = 19/140 (13%), Positives = 40/140 (28%), Gaps = 9/140 (6%)
Query: 43 NHGLMMVGPSGSGKSTAWKVLLKALERYEGVEGV-AHIIDPKAISKEALYGVLDPNTREW 101
+H +++G SGSGKS + + + + P+ ++ G +P +
Sbjct: 6 HHIYVLMGVSGSGKSA----VASEVAHQLHAAFLDGDFLHPRRNIEKMASG--EPLNDDD 59
Query: 102 TDGLFTHILRRIIDNVRGEISKRQWIIFDGDVDPEWVENLNSVLDDNKLLTLPNG--ERL 159
+ R + + N L L + RL
Sbjct: 60 RKPWLQALNDAAFAMQRTNKVSLIVCSALKKHYRDLLREGNPNLSFIYLKGDFDVIESRL 119
Query: 160 SLPPNIRIMFEVQDLKYATL 179
++ ++ TL
Sbjct: 120 KARKGHFFKTQMLVTQFETL 139
Score = 32.3 bits (72), Expect = 0.26
Identities = 9/19 (47%), Positives = 15/19 (78%)
Query: 760 LLLIGVSGAGKTTLSRFVA 778
+L+GVSG+GK+ ++ VA
Sbjct: 9 YVLMGVSGSGKSAVASEVA 27
Score = 29.2 bits (64), Expect = 2.5
Identities = 9/22 (40%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Query: 416 HKPLVLCGPPGSGKTMTLLSAL 437
H VL G GSGK+ + S +
Sbjct: 6 HHIYVLMGVSGSGKS-AVASEV 26
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of
N-ethylmalemide-sensitive fusion (NSF) protein {Chinese
hamster (Cricetulus griseus) [TaxId: 10029]}
Length = 246
Score = 35.7 bits (81), Expect = 0.030
Identities = 16/103 (15%), Positives = 41/103 (39%), Gaps = 12/103 (11%)
Query: 736 LVLFDEVLDHVLRIDRIF--------RQPQGHLLLIGVSGAGKTTLSRFVAFMNGLSVFQ 787
++ + + + VL + R P +LL G +GKT L+ +A + +
Sbjct: 11 IIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIK 70
Query: 788 IRA---HNKYTGADFDEDLRTVLRRSGCKNEKIAFLLDESNVL 827
I + ++ + ++ + + K++ ++D+ L
Sbjct: 71 ICSPDKMIGFSETAKCQAMKKIFDDA-YKSQLSCVVVDDIERL 112
Score = 33.0 bits (74), Expect = 0.22
Identities = 19/167 (11%), Positives = 43/167 (25%), Gaps = 19/167 (11%)
Query: 417 KPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTPELLLKTFDHYCEYRKTPNGV 476
++L GPP SGKT A + + + S +
Sbjct: 41 VSVLLEGPPHSGKTAL---AAKIAEESNFPFIKICSPDKMI------GFSETAKCQAMKK 91
Query: 477 ILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQC 536
I + + D+ +++ I + + K ++
Sbjct: 92 IFDDAYKSQLSCVVVDD-----IERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLI 146
Query: 537 VGACNPPTDPGRKPLSHRFLRHVPVIYVDYPGETSLKQIYGTFSRAM 583
+G + + + F + V P + +Q+
Sbjct: 147 IGTTSRKDVLQEMEMLNAFSTTIHV-----PNIATGEQLLEALELLG 188
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 35.6 bits (82), Expect = 0.032
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Query: 49 VGPSGSGKSTAWKVLLKALERYEGVEGVAHIIDPKAISK 87
VGP+GSGKST + L+ G ++D K + +
Sbjct: 46 VGPNGSGKST----VAALLQNLYQPTGGQLLLDGKPLPQ 80
Score = 29.9 bits (67), Expect = 2.2
Identities = 11/53 (20%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Query: 753 FRQPQGHLL-LIGVSGAGKTTLSRFVAFMNGLSVFQIRAHNKYTGADFDEDLR 804
F G + L+G +G+GK+T++ + + + Q+ K L
Sbjct: 35 FTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLH 87
>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 190
Score = 35.3 bits (80), Expect = 0.032
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
Query: 417 KPLVLCGPPGSGKTMTLLSALRA-LPDMEVVSLNFSSATT 455
+P+VL GP G+GK+ TLL L + S+ S TT
Sbjct: 1 RPVVLSGPSGAGKS-TLLKKLFQEHSSIFGFSV---SHTT 36
Score = 27.6 bits (60), Expect = 9.2
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 760 LLLIGVSGAGKTTLSR 775
++L G SGAGK+TL +
Sbjct: 3 VVLSGPSGAGKSTLLK 18
>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI
{Rhodobacter capsulatus [TaxId: 1061]}
Length = 333
Score = 36.1 bits (82), Expect = 0.035
Identities = 39/255 (15%), Positives = 67/255 (26%), Gaps = 47/255 (18%)
Query: 419 LVLCGPPGSGKTMTLLSALRA-LPDMEVV-SLNFSSATT--------------------- 455
+++ G G+GK+ + AL A LP++E V SS
Sbjct: 31 VLVFGDRGTGKST-AVRALAALLPEIEAVEGCPVSSPNVEMIPDWATVLSTNVIRKPTPV 89
Query: 456 --------PELLLKTFDHYCEYRKTPNGVILSPIQLGKWLVLFCDEINLPDMDKYATQRV 507
+ ++ D K + L+ DE NL +
Sbjct: 90 VDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLEDHIVDLLLD 149
Query: 508 ISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLRHVPVIYVDYP 567
++ + + +R R VG+ NP R L RF V V+
Sbjct: 150 VAQSGENVVERDGL-----SIRHPARFVLVGSGNPEEGDLRPQLLDRFGLSVEVLSPRDV 204
Query: 568 G-ETSLKQIYGTFSRAMLRLIPPLRGYADALTNA---------MVELYLASQEKFTQDMQ 617
+ + T+ + R + N VE +
Sbjct: 205 ETRVEVIRRRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAPNTALYDCAALCI 264
Query: 618 PHYVYSPREMTRWVR 632
R +R
Sbjct: 265 ALGSDGLRGELTLLR 279
Score = 35.7 bits (81), Expect = 0.040
Identities = 36/169 (21%), Positives = 59/169 (34%), Gaps = 21/169 (12%)
Query: 22 GNEEGGPWMEKVLQLYQISNLNHGLMMVGPSGSGKSTAWKVLLKALERYEGVEGVAHIID 81
G E+ M+ L L + G+++ G G+GKSTA + L L E VEG
Sbjct: 11 GQED----MKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSP 66
Query: 82 PKAISKEALYGVLDPNTREWTDGLFTHILRRIIDNVRGEISKRQWIIFDGDVDPEWVENL 141
+W L T+++R+ V + + + G +D E +
Sbjct: 67 N------------VEMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVV-GALDIERAISK 113
Query: 142 NSVLDDNKLLTLPNGERLSLPPNIRIMFEVQDLKYATLATVSRCGMIWF 190
+ LL N L I ++D L V++ G
Sbjct: 114 GEKAFEPGLLARANRGYLY----IDECNLLEDHIVDLLLDVAQSGENVV 158
Score = 33.4 bits (75), Expect = 0.24
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 758 GHLLLIGVSGAGKTTLSRFVA 778
G +L+ G G GK+T R +A
Sbjct: 29 GGVLVFGDRGTGKSTAVRALA 49
>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS
kinase) {Human (Homo sapiens) [TaxId: 9606]}
Length = 195
Score = 35.0 bits (79), Expect = 0.044
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 6/40 (15%)
Query: 745 HVLRIDR--IFRQPQGH----LLLIGVSGAGKTTLSRFVA 778
HV R R + G + L G+SGAGKTT+S +
Sbjct: 1 HVSRNKRGQVVGTRGGFRGCTVWLTGLSGAGKTTVSMALE 40
Score = 28.1 bits (61), Expect = 7.7
Identities = 9/24 (37%), Positives = 12/24 (50%), Gaps = 3/24 (12%)
Query: 416 HKPLV--LCGPPGSGKTMTLLSAL 437
+ L G G+GKT T+ AL
Sbjct: 17 FRGCTVWLTGLSGAGKT-TVSMAL 39
Score = 27.7 bits (60), Expect = 8.1
Identities = 15/82 (18%), Positives = 30/82 (36%), Gaps = 4/82 (4%)
Query: 46 LMMVGPSGSGKSTAWKVLLKALERYEGVEGVAHIIDPKAISKEALYGVLDPNTREWTDGL 105
+ + G SG+GK+T + ALE Y G+ ++ L L + + + +
Sbjct: 22 VWLTGLSGAGKTT----VSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENV 77
Query: 106 FTHILRRIIDNVRGEISKRQWI 127
+ G + +I
Sbjct: 78 RRIAEVAKLFADAGLVCITSFI 99
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB
{Escherichia coli [TaxId: 562]}
Length = 433
Score = 35.7 bits (81), Expect = 0.044
Identities = 35/259 (13%), Positives = 65/259 (25%), Gaps = 24/259 (9%)
Query: 43 NHGLMMVGPSGSGKSTAWKVLLKALERYEGVEGVAHIIDPKAISKEALYG-------VLD 95
L++ G +G+GKS + L I+DP D
Sbjct: 50 PRHLLVNGATGTGKSVLLRELAYTGLLR---GDRMVIVDPNGDMLSKFGRDKDIILNPYD 106
Query: 96 PNTREWT--DGLFTHILRRIIDNVRGEISKRQWIIFDGDVDPEWVENLNSVLDDNKLLTL 153
T+ W+ + + + K + L ++
Sbjct: 107 QRTKGWSFFNEIRNDYDWQRYALSVVPRGKTDEAEEWASYGRLLLRETAKKLALIGTPSM 166
Query: 154 PNGERLSLPPNIRIMFEVQDLKYATLATVSRCGMIWFSEDVLSTEMIFENYLSRLRNIAL 213
+ +++ TLA G S+ + S + + L +
Sbjct: 167 RELFHWTTIATFD---DLRGFLEGTLAESLFAGSNEASKALTSARFVLSDKLPEHVTMPD 223
Query: 214 DDID--------DDSSLLITVDATGKAPDDVLSPALTLQQDVASILSTHFAPDGLVVRAL 265
D + +L IT L + + SILS P + +
Sbjct: 224 GDFSIRSWLEDPNGGNLFITWREDMGPALRPLI-SAWVDVVCTSILSLPEEPKRRLWLFI 282
Query: 266 DYAMQQEHIMDFTRLRALG 284
D E + G
Sbjct: 283 DELASLEKLASLADALTKG 301
Score = 31.8 bits (71), Expect = 0.80
Identities = 38/293 (12%), Positives = 88/293 (30%), Gaps = 40/293 (13%)
Query: 759 HLLLIGVSGAGKTTLSRFV---AFMNGLSVFQIRAHNKYTGADFDEDLRTVLRRSGCKNE 815
HLL+ G +G GK+ L R + + G + + + + G +
Sbjct: 52 HLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDPNGDML------------SKFGRDKD 99
Query: 816 KIAFLLDES----NVLESGFLERMNTLLANGEIP--GLFEGDEYTTLMTQCKEGAQREGL 869
I D+ + + A +P E +E+ + ++
Sbjct: 100 IILNPYDQRTKGWSFFNEIRNDYDWQRYALSVVPRGKTDEAEEWASYGRLLLRETAKKLA 159
Query: 870 MLD--SNEELYKWFTQQVMKNLHVVFTMNPSSEGLKDRAATSPALFNRCVLNWFGDWSDT 927
++ S EL+ W T +L F +E L + + D
Sbjct: 160 LIGTPSMRELFHWTTIATFDDLR-GFLEGTLAESLFAGSNEASKALTS-ARFVLSDKLPE 217
Query: 928 ALYQVAKEFTSKIDLDGPQNWKAPDFFPSVCSLVSTTPSHRDSVINACVYVHQTLHKANA 987
+ +F+ + L+ P ++ ++ + +
Sbjct: 218 HVTMPDGDFSIRSWLEDPNG---------GNLFITWREDMGPALRPLISAWVDVVCTSIL 268
Query: 988 RLSKRGSRTMAITPRHYLDFINHFVKL--YREKCSELEEQQLHLNVGLGKIAE 1038
L + R + + ++D + KL + ++ + L + GL ++
Sbjct: 269 SLPEEPKRRLWL----FIDELASLEKLASLADALTKGRKAGLRVVAGLQSTSQ 317
>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic
domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 251
Score = 35.1 bits (79), Expect = 0.050
Identities = 24/184 (13%), Positives = 39/184 (21%), Gaps = 9/184 (4%)
Query: 756 PQGHLLLI-GVSGAGKTTLSRFVAFMNGLSVFQIRAHNKYTGADFDEDLRTV-------- 806
G + + G GK+ L +A + + K D + R V
Sbjct: 32 ETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQR 91
Query: 807 LRRSGCKNEKIAFLLDESNVLESGFLERMNTLLANGEIPGLFEGDEYTTLMTQCKEGAQR 866
N L + + L D L G
Sbjct: 92 FGLDPDDALNNVAYARAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGE 151
Query: 867 EGLMLDSNEELYKWFTQQVMKNLHVVFTMNPSSEGLKDRAATSPALFNRCVLNWFGDWSD 926
+ + + + V N + A +P N S
Sbjct: 152 LSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPTGGNIMAHSST 211
Query: 927 TALY 930
T L
Sbjct: 212 TRLG 215
>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 213
Score = 34.6 bits (78), Expect = 0.057
Identities = 28/167 (16%), Positives = 59/167 (35%), Gaps = 10/167 (5%)
Query: 50 GPSGSGKSTAWKVLLKALERYEGVEGVAHIIDPKAISKEALYGVLDPNTREWT-DGLFTH 108
G + SGKS+ +++ L + E ++ +S+++ Y VL + G F
Sbjct: 9 GGTASGKSSVCAKIVQLLGQNEVDYRQKQVV---ILSQDSFYRVLTSEQKAKALKGQFNF 65
Query: 109 ILRRIIDNVRGEISKRQWIIFDGDVDPEWVENLNSVLDDNKLL-----TLPNGERLSLPP 163
DN + ++ P + +S ++ + L G
Sbjct: 66 DHPDAFDNELILKTLKEITEGKTVQIPVYDFVSHSRKEETVTVYPADVVLFEGILAFYSQ 125
Query: 164 NIRIMFEVQDLKYATLATVS-RCGMIWFSEDVLSTEMIFENYLSRLR 209
+R +F+++ T R + SE E I Y++ ++
Sbjct: 126 EVRDLFQMKLFVDTDADTRLSRRVLRDISERGRDLEQILSQYITFVK 172
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 140
Score = 33.9 bits (76), Expect = 0.061
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 413 LAEHKPLVLCGPPGSGKTMTLLSAL 437
L + VL PG+GKT L +
Sbjct: 4 LKKGMTTVLDFHPGAGKTRRFLPQI 28
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 34.9 bits (79), Expect = 0.063
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 412 WLAEHKPLVLCGPPGSGKTMTLLSAL 437
+ + ++ PG+GKT L A+
Sbjct: 5 IFRKKRLTIMDLHPGAGKTKRYLPAI 30
Score = 28.3 bits (62), Expect = 7.4
Identities = 7/37 (18%), Positives = 12/37 (32%), Gaps = 2/37 (5%)
Query: 46 LMMVGPSGSGKSTAWKVLLKALERYEGVEGVAHIIDP 82
+M G+GK+ L + I+ P
Sbjct: 12 TIMDLHPGAGKTKR--YLPAIVREAIKRGLRTLILAP 46
>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 196
Score = 34.2 bits (77), Expect = 0.064
Identities = 22/194 (11%), Positives = 60/194 (30%), Gaps = 23/194 (11%)
Query: 46 LMMVGPSGSGKSTAWKVLLKALE---RYEGVEGVAHIIDPKAISKEALYGVLDPNTREWT 102
+ ++G G+GK T + L+K G A + E + +
Sbjct: 11 IFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQ 70
Query: 103 DGLFTHILRRIIDNVRGEISKRQWIIFDGDVDPEWVENLNSVLDDNKLLTLPNGERLSLP 162
+ + I DNV+ +K +++I + + + ++K + + +
Sbjct: 71 EITLALLRNAISDNVK--ANKHKFLIDGFPRKMDQAISFERDIVESKFILFFDCPEDIML 128
Query: 163 PNIRIMFEVQDLKYATLATVSRCGMIWFSEDVLSTEMIFENYLSRLRNIALDDIDDDSSL 222
+ + + ++ + + + + E + + S
Sbjct: 129 ERLLERGKTSGRSDDNIESIKKRFNTFKET----SMPVIEYF-------------ETKSK 171
Query: 223 LITVDATGKAPDDV 236
++ V +DV
Sbjct: 172 VVRVRCDRS-VEDV 184
Score = 28.8 bits (63), Expect = 3.9
Identities = 21/133 (15%), Positives = 41/133 (30%), Gaps = 5/133 (3%)
Query: 419 LVLCGPPGSGKTM--TLLSALRALPDMEVVSLNFSSATTPELLL-KTFDHYCEYRKTPNG 475
+ + G PG+GK L + + L + + + + +
Sbjct: 11 IFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQ 70
Query: 476 VILSPIQLGKWL--VLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLER 533
I + V L D + ISF R ++E + + + LER
Sbjct: 71 EITLALLRNAISDNVKANKHKFLIDGFPRKMDQAISFERDIVESKFILFFDCPEDIMLER 130
Query: 534 IQCVGACNPPTDP 546
+ G + +D
Sbjct: 131 LLERGKTSGRSDD 143
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal
domain {Aeropyrum pernix [TaxId: 56636]}
Length = 287
Score = 34.7 bits (78), Expect = 0.073
Identities = 27/204 (13%), Positives = 60/204 (29%), Gaps = 13/204 (6%)
Query: 40 SNLNHGLMMVGPSGSGKSTAWKVLLKALERYEGVEGVAHI-------IDPKAISKEALYG 92
S++N +G G GK+T K +K + EG+ P + +L
Sbjct: 43 SDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIV 102
Query: 93 VLDPNTREWTDGLFTHILRRIIDNVRGEISKRQWIIFDGD-VDPEWVENLNSVLDDNKLL 151
+ IL+ ++DN+ E I+ + + + ++
Sbjct: 103 RQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVH 162
Query: 152 TLPNGE----RLSLPPNIRIMFEVQDLKYATLATVSRCGMIWFSEDVLSTEMIFENYLSR 207
R+ + + ++ S+ G + ++ R
Sbjct: 163 EEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPA-YKSRELYTILEQR 221
Query: 208 LRNIALDDIDDDSSLLITVDATGK 231
D + + L + D G+
Sbjct: 222 AELGLRDTVWEPRHLELISDVYGE 245
Score = 29.0 bits (63), Expect = 4.5
Identities = 5/27 (18%), Positives = 9/27 (33%)
Query: 419 LVLCGPPGSGKTMTLLSALRALPDMEV 445
G G GKT ++ + +
Sbjct: 49 YGSIGRVGIGKTTLAKFTVKRVSEAAA 75
Score = 28.2 bits (61), Expect = 9.2
Identities = 28/179 (15%), Positives = 56/179 (31%), Gaps = 8/179 (4%)
Query: 725 KVFYEEELDVQLVLFDEVLDHVLRI-------DRIFRQPQGHLLLIGVSGAGKTTLSRFV 777
+VF E + +L + + + RI IG G GKTTL++F
Sbjct: 7 RVFDENYIPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFT 66
Query: 778 AFMNGLSVFQIRAHNKYTGADFDEDLRTVLRRSGCKNEKIAFLLDESNVLESGFLERMNT 837
+ + K + S + + + L+ +
Sbjct: 67 VKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTG-YPIQVRGAPALDILKALVD 125
Query: 838 LLANGEIPGLFEGDEYTTLMTQCKEGAQREGLMLDSNEELYKWFTQQVMKNLHVVFTMN 896
L L DE+ ++++ + A+ +L +EE+ + L V +
Sbjct: 126 NLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVR 184
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Thermus thermophilus [TaxId: 274]}
Length = 247
Score = 34.4 bits (79), Expect = 0.073
Identities = 42/215 (19%), Positives = 69/215 (32%), Gaps = 51/215 (23%)
Query: 386 ETQKVAASDVVVPTLDTVRHESLLYTWLAEHKPLVLCGPPGSGKTMTLLSALRALPDMEV 445
E K ++V + R + K ++L GPPG GKT L A+ +
Sbjct: 15 EEAKEELKEIVEFLKNPSRFHEM---GARIPKGVLLVGPPGVGKTH-LARAVAGEARVPF 70
Query: 446 VSLNFSSAT------TPELLLKTFDHYCEYRKTPNGVILSPIQLGKWLVLFCDEI----- 494
++ + S + F+ + ++F DEI
Sbjct: 71 ITASGSDFVEMFVGVGAARVRDLFETAKRHAPC---------------IVFIDEIDAVGR 115
Query: 495 ---NLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVGACNPPT--DPG-R 548
+ ++ ++ L L+E GF I + A N P DP
Sbjct: 116 KRGSGVGGGNDEREQTLNQL--LVEMDGFE--------KDTAIVVMAATNRPDILDPALL 165
Query: 549 KPLSHRFLRHVPVIYVDYPGETSLKQIYGTFSRAM 583
+P RF R I +D P +QI +R
Sbjct: 166 RP--GRFDRQ---IAIDAPDVKGREQILRIHARGK 195
Score = 33.7 bits (77), Expect = 0.14
Identities = 20/86 (23%), Positives = 32/86 (37%), Gaps = 5/86 (5%)
Query: 741 EVLDHVLRIDRIFRQPQGHLLLIGVSGAGKTTLSRFVAFMNGLSVFQIRAH---NKYTGA 797
E L + R + + +LL+G G GKT L+R VA + + G
Sbjct: 26 EFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVG- 84
Query: 798 DFDEDLRTVLRRSGCKNEKIAFLLDE 823
+R + + I F +DE
Sbjct: 85 VGAARVRDLFETAKRHAPCIVF-IDE 109
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA,
C-terminal domain {Lactococcus lactis [TaxId: 1358]}
Length = 242
Score = 34.5 bits (79), Expect = 0.075
Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 4/39 (10%)
Query: 49 VGPSGSGKSTAWKVLLKALERYEGVEGVAHIIDPKAISK 87
GPSG GKST + LER+ ID + I
Sbjct: 34 AGPSGGGKST----IFSLLERFYQPTAGEITIDGQPIDN 68
>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId:
161736]}
Length = 321
Score = 34.6 bits (79), Expect = 0.075
Identities = 22/132 (16%), Positives = 40/132 (30%), Gaps = 16/132 (12%)
Query: 730 EELDVQLVLFDEVLDHVLRIDRIFRQPQGHLLLIGVSGAGKTTLSRFVAFM--NGLSVFQ 787
+L +LV V+ R G +++ G +GKT L +
Sbjct: 100 VDLTGELVGCSPVVAEFGGH----RYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYAT 155
Query: 788 IRAH---NKYTGADFDEDLRTVLR--RSGC---KNEKIAFLLDESNVLESGFLERM-NTL 838
+R + Y DF+ + + R + + SG + R L
Sbjct: 156 VRFGEPLSGYNT-DFNVFVDDIARAMLQHRVIVIDSLKNVIGAAGGNTTSGGISRGAFDL 214
Query: 839 LANGEIPGLFEG 850
L++ G
Sbjct: 215 LSDIGAMAASRG 226
Score = 33.9 bits (77), Expect = 0.13
Identities = 25/170 (14%), Positives = 44/170 (25%), Gaps = 32/170 (18%)
Query: 419 LVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTPELLLKTFDHYCEYR-KTPNGVI 477
+++ G SGKT + AL + +++ E L Y V
Sbjct: 126 VIVTGKGNSGKTPL----VHALGEALGGKDKYATVRFGEPLSG-------YNTDFNVFVD 174
Query: 478 LSPIQLGKWLVLFCDEINLPDMDKYA------TQRVISFLRQLIEQRGFYRPADKQWVSL 531
+ + V+ D + R L I +
Sbjct: 175 DIARAMLQHRVIVIDSLKNVIGAAGGNTTSGGISRGAFDLLSDIGAM----------AAS 224
Query: 532 ERIQCVGACNPPTDPGRKPLSH----RFLRHVPVIYVDYPGETSLKQIYG 577
+ + NP ++ + R VI D GE + G
Sbjct: 225 RGCVVIASLNPTSNDDKIVELVKEASRSNSTSLVISTDVDGEWQVLTRTG 274
>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF6 [TaxId: 9606]}
Length = 173
Score = 33.8 bits (76), Expect = 0.090
Identities = 9/47 (19%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 749 IDRIFRQPQGHLLLIGVSGAGKTTL-SRFVAFMNGLSVFQIRAHNKY 794
+ +IF + +L++G+ AGKTT+ + + ++ + + +
Sbjct: 4 LSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVET 50
>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 186
Score = 33.8 bits (76), Expect = 0.090
Identities = 12/23 (52%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Query: 417 KPLVLCGPPGSGKTMTLLSALRA 439
+P+V+ GP G+GK+ TLL L A
Sbjct: 2 RPIVISGPSGTGKS-TLLKKLFA 23
>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain
{Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Length = 183
Score = 33.9 bits (76), Expect = 0.094
Identities = 8/26 (30%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 754 RQPQGH-LLLIGVSGAGKTTLSRFVA 778
R QG + L G +GK ++R +
Sbjct: 2 RATQGFTIFLTGYMNSGKDAIARALQ 27
Score = 29.7 bits (65), Expect = 2.3
Identities = 6/22 (27%), Positives = 9/22 (40%)
Query: 46 LMMVGPSGSGKSTAWKVLLKAL 67
+ + G SGK + L L
Sbjct: 9 IFLTGYMNSGKDAIARALQVTL 30
>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic
domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 254
Score = 34.3 bits (77), Expect = 0.097
Identities = 24/166 (14%), Positives = 43/166 (25%), Gaps = 28/166 (16%)
Query: 756 PQGHLLLI-GVSGAGKTTLS--------------------RFVAFMNGLSVFQIRAHNKY 794
+ + G G+GKT L+ ++ N +IR +
Sbjct: 34 ETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQN 93
Query: 795 TGADFDEDLRTVLRRSGCKNEKIAFLLDESNVLESGFLERMNTLLANGEIPGLFEGDEYT 854
G D DE L+ + + L+ + +++ LL L D T
Sbjct: 94 RGLDPDEVLKHIYVARAFNSNHQMLLVQQ-------AEDKIKELLNTDRPVKLLIVDSLT 146
Query: 855 TLMTQCKEGAQREGLMLDSNEELYKWFTQQVMKNLHVVFTMNPSSE 900
+ G + + VF N
Sbjct: 147 SHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQA 192
>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea
mays) [TaxId: 4577]}
Length = 189
Score = 33.7 bits (76), Expect = 0.10
Identities = 15/123 (12%), Positives = 35/123 (28%), Gaps = 8/123 (6%)
Query: 419 LVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTPELLLKTFDHYCEYRKTPNGVIL 478
+++ G P SGK T ++ + +S +LL E K +
Sbjct: 6 VMISGAPASGKG-TQCELIKTKYQLAHIS-------AGDLLRAEIAAGSENGKRAKEFME 57
Query: 479 SPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQCVG 538
+ +V+ + L D ++ + Q + + + +
Sbjct: 58 KGQLVPDEIVVNMVKERLRQPDAQENGWLLDGYPRSYSQAMALETLEIRPDTFILLDVPD 117
Query: 539 ACN 541
Sbjct: 118 ELL 120
Score = 27.9 bits (61), Expect = 6.7
Identities = 4/20 (20%), Positives = 9/20 (45%)
Query: 759 HLLLIGVSGAGKTTLSRFVA 778
+++ G +GK T +
Sbjct: 5 KVMISGAPASGKGTQCELIK 24
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC
transporter MsbA, C-terminal domain {Salmonella
typhimurium [TaxId: 90371]}
Length = 253
Score = 34.0 bits (78), Expect = 0.11
Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Query: 49 VGPSGSGKSTAWKVLLKALERYEGVEGVAHIIDPKAISKEAL 90
VG SGSGKST + + R+ ++ ++D + + L
Sbjct: 47 VGRSGSGKST----IASLITRFYDIDEGHILMDGHDLREYTL 84
Score = 29.4 bits (66), Expect = 3.1
Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
Query: 753 FRQPQGHLL-LIGVSGAGKTTLSRFVAFMNGLSVFQIRAHNKYTGADFDEDLR 804
+ P G + L+G SG+GK+T++ + + I LR
Sbjct: 36 LKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLR 88
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB
{Thermus thermophilus [TaxId: 274]}
Length = 239
Score = 33.8 bits (76), Expect = 0.12
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 9/62 (14%)
Query: 739 FDEV--LDHVLRIDRIFRQ-------PQGHLLLIGVSGAGKTTLSRFVAFMNGLSVFQIR 789
DE + + + R++ + P HLLL G G GKTTL+ +A G+++
Sbjct: 8 LDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTS 67
Query: 790 AH 791
Sbjct: 68 GP 69
Score = 30.7 bits (68), Expect = 1.2
Identities = 20/95 (21%), Positives = 32/95 (33%), Gaps = 7/95 (7%)
Query: 417 KPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTPELLLKTFDHYCEYRKTPNGV 476
+ L+L GPPG GKT A + +N + P + G
Sbjct: 36 EHLLLFGPPGLGKTTL------AHVIAHELGVNLRVTSGPAIEKPGDLAAILANSLEEGD 89
Query: 477 ILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFL 511
IL ++ + +E P M+ + VI
Sbjct: 90 ILFIDEIHRLSR-QAEEHLYPAMEDFVMDIVIGQG 123
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain
{Bacteriophage T4 [TaxId: 10665]}
Length = 152
Score = 33.2 bits (74), Expect = 0.12
Identities = 16/96 (16%), Positives = 30/96 (31%), Gaps = 4/96 (4%)
Query: 46 LMMVGPSGSGKSTAWKVLLKALERYEGVEGVAHIIDPKAISKEALYGVLDPNTREWTDGL 105
++ +G GSGKST + + + + + A + Y T
Sbjct: 5 ILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGMQ 64
Query: 106 FTHILRRIIDNVRGEISKRQWIIFDGDVDPEWVENL 141
F + + II D +++PE
Sbjct: 65 FDTAKSILYGGDSV----KGVIISDTNLNPERRLAW 96
Score = 29.7 bits (65), Expect = 1.7
Identities = 9/23 (39%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 417 KPLVLCGPPGSGKTMTLLSALRA 439
K ++ G PGSGK+ T A
Sbjct: 3 KIILTIGCPGSGKS-TWAREFIA 24
Score = 28.9 bits (63), Expect = 3.3
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 760 LLLIGVSGAGKTTLSR 775
+L IG G+GK+T +R
Sbjct: 5 ILTIGCPGSGKSTWAR 20
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK,
N-terminal domain {Archaeon Thermococcus litoralis
[TaxId: 2265]}
Length = 240
Score = 33.8 bits (77), Expect = 0.14
Identities = 25/123 (20%), Positives = 42/123 (34%), Gaps = 10/123 (8%)
Query: 419 LVLCGPPGSGKTMTLLSALRAL--PDMEVVSLNFSSATTPELLLKTFDHYCEYRKTPNGV 476
++L GP G GKT T L + L P + + PE + +
Sbjct: 32 MILLGPSGCGKT-TTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSY 90
Query: 477 ILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQL-IEQRGFYRPAD-----KQWVS 530
L P + F ++ + QRV L + + +P + +Q V+
Sbjct: 91 ALYPHMTVYDNIAFPLKLRKVPRQE-IDQRVREVAELLGLTELLNRKPRELSGGQRQRVA 149
Query: 531 LER 533
L R
Sbjct: 150 LGR 152
Score = 31.1 bits (70), Expect = 0.80
Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Query: 46 LMMVGPSGSGKSTAWKVLLKALERYEGVEGVAHIIDPKAIS 86
++++GPSG GK+T L+ + E I K ++
Sbjct: 32 MILLGPSGCGKTT----TLRMIAGLEEPSRGQIYIGDKLVA 68
Score = 29.9 bits (67), Expect = 2.0
Identities = 16/66 (24%), Positives = 24/66 (36%), Gaps = 8/66 (12%)
Query: 741 EVLDHV-LRIDRIFRQPQGHLL-LIGVSGAGKTTLSRFVAFMNGLSVFQIRAHNKYTGAD 798
+ + L + G + L+G SG GKTT R +A + S QI +K
Sbjct: 17 TAVREMSLEV------KDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADP 70
Query: 799 FDEDLR 804
Sbjct: 71 EKGIFV 76
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein
{Escherichia coli [TaxId: 562]}
Length = 241
Score = 33.7 bits (77), Expect = 0.14
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 46 LMMVGPSGSGKSTAWKVLLKALERYEGVEGVAHIIDPKAISK 87
+ +VG SGSGKST L K ++R+ E +ID ++
Sbjct: 32 IGIVGRSGSGKST----LTKLIQRFYIPENGQVLIDGHDLAL 69
Score = 28.3 bits (63), Expect = 6.2
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 762 LIGVSGAGKTTLSRFVAFMNGLSVFQIR 789
++G SG+GK+TL++ + Q+
Sbjct: 34 IVGRSGSGKSTLTKLIQRFYIPENGQVL 61
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV,
N-terminal domain {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 242
Score = 33.5 bits (76), Expect = 0.14
Identities = 14/58 (24%), Positives = 28/58 (48%)
Query: 762 LIGVSGAGKTTLSRFVAFMNGLSVFQIRAHNKYTGADFDEDLRTVLRRSGCKNEKIAF 819
++G SGAGKTT R +A ++ S ++ ++ ++ + R+ G + A
Sbjct: 36 ILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWAL 93
Score = 30.4 bits (68), Expect = 1.5
Identities = 8/41 (19%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
Query: 46 LMMVGPSGSGKSTAWKVLLKALERYEGVEGVAHIIDPKAIS 86
++GPSG+GK+T ++ + + D + ++
Sbjct: 34 FGILGPSGAGKTT----FMRIIAGLDVPSTGELYFDDRLVA 70
Score = 28.1 bits (62), Expect = 7.7
Identities = 28/169 (16%), Positives = 46/169 (27%), Gaps = 22/169 (13%)
Query: 419 LVLCGPPGSGKTMTLLSALRAL--PDMEVVSLNFSSATTPELLLKTFDHYCEYRKTPNGV 476
+ GP G+GKT T + + L P + + + G+
Sbjct: 34 FGILGPSGAGKT-TFMRIIAGLDVPSTGELYFDDRLVASNG------KLIVPPEDRKIGM 86
Query: 477 ILSPIQLGKWLVLF----CDEINLPDMDKYATQRVISFLRQL-IEQRGFYRPAD-----K 526
+ L L F N+ + +RV + L I + P + +
Sbjct: 87 VFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQ 146
Query: 527 QWVSLERIQCVGACNPPTD---PGRKPLSHRFLRHVPVIYVDYPGETSL 572
Q V+L R D R + G T L
Sbjct: 147 QRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLL 195
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase
{Streptomyces venezuelae [TaxId: 54571]}
Length = 178
Score = 33.1 bits (74), Expect = 0.15
Identities = 10/83 (12%), Positives = 29/83 (34%), Gaps = 6/83 (7%)
Query: 46 LMMVGPSGSGKSTAWKVLLKALERYEGVEGVAHIIDPKAISKEALYGVLDPNTREWTDGL 105
+++ G S +GKS +++ L+ +A +D ++ + + D
Sbjct: 6 IILNGGSSAGKSG----IVRCLQSVLPEPWLAFGVD--SLIEAMPLKMQSAEGGIEFDAD 59
Query: 106 FTHILRRIIDNVRGEISKRQWII 128
+ + G ++ +
Sbjct: 60 GGVSIGPEFRALEGAWAEGVVAM 82
Score = 31.1 bits (69), Expect = 0.70
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 760 LLLIGVSGAGKTTLSRFVA 778
++L G S AGK+ + R +
Sbjct: 6 IILNGGSSAGKSGIVRCLQ 24
Score = 29.6 bits (65), Expect = 1.9
Identities = 5/32 (15%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 417 KPLVLCGPPGSGKTMTLLSALRALPDMEVVSL 448
+ ++L G +GK+ ++ L+++ ++
Sbjct: 4 RMIILNGGSSAGKS-GIVRCLQSVLPEPWLAF 34
>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi
[TaxId: 556]}
Length = 170
Score = 33.0 bits (74), Expect = 0.15
Identities = 8/35 (22%), Positives = 15/35 (42%)
Query: 760 LLLIGVSGAGKTTLSRFVAFMNGLSVFQIRAHNKY 794
+ ++G G G TT+ R +A G ++
Sbjct: 5 IFMVGARGCGMTTVGRELARALGYEFVDTDIFMQH 39
Score = 30.7 bits (68), Expect = 0.75
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 417 KPLVLCGPPGSGKTMTLLSALRALPDMEVVSLN 449
+P+ + G G G T T+ L E V +
Sbjct: 3 EPIFMVGARGCGMT-TVGRELARALGYEFVDTD 34
Score = 28.0 bits (61), Expect = 5.9
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 42 LNHGLMMVGPSGSGKSTAWKVLLKALER 69
+ + MVG G G +T + L +AL
Sbjct: 1 MTEPIFMVGARGCGMTTVGRELARALGY 28
>d1bg1a1 a.47.1.1 (A:136-321) STAT3b {Mouse (Mus musculus) [TaxId:
10090]}
Length = 186
Score = 32.9 bits (75), Expect = 0.15
Identities = 18/114 (15%), Positives = 47/114 (41%), Gaps = 3/114 (2%)
Query: 1017 EKCSELEEQQLHLNVGLGKIAETVEQVEEMQKSLAVKSQELQSKNEAANL--KLKEMIKD 1074
EK LE+ + + + + ++ VE +Q + L+S+ + +L + + +
Sbjct: 4 EKQQMLEQHLQDVRKRVQDLEQKMKVVENLQDDFDFNYKTLKSQGDMQDLNGNNQSVTRQ 63
Query: 1075 QQEAEKRKVQSQDI-QAEIEKQTVEIAQKRVFVMEDLAQVEPAVMDAQQAVKEI 1127
+ + ++ + + D + I + + +V + L E A +Q + I
Sbjct: 64 KMQQLEQMLTALDQMRRSIVSELAGLLSAMEYVQKTLTDEELADWKRRQQIACI 117
>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB
{Thermotoga maritima [TaxId: 2336]}
Length = 238
Score = 33.4 bits (75), Expect = 0.16
Identities = 20/106 (18%), Positives = 37/106 (34%), Gaps = 12/106 (11%)
Query: 739 FDEV--LDHVLRIDRIFRQ-------PQGHLLLIGVSGAGKTTLSRFVAFMNGLSVFQIR 789
DE ++V + + + H+LL G G GKTTL+ +A ++
Sbjct: 8 LDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTS 67
Query: 790 AHNKYTGADFDEDLRTVLRRSGCKNEKIAFLLDESNVLESGFLERM 835
D L ++ R ++I L + +E +
Sbjct: 68 GPVLVKQGDMAAILTSLERGDVLFIDEIHRL---NKAVEELLYSAI 110
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens),
isoenzyme 6 [TaxId: 9606]}
Length = 173
Score = 33.0 bits (74), Expect = 0.17
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Query: 760 LLLIGVSGAGKTTLSRFVAFMNGLSVF----QIRAHNKYTGADFD 800
+LL G G GKTTL + +A +GL R Y G D +
Sbjct: 7 ILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDGYDEE 51
Score = 29.5 bits (65), Expect = 2.4
Identities = 10/31 (32%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 419 LVLCGPPGSGKTMTLLSALRALPDMEVVSLN 449
++L G PG GKT TL L + ++ +++
Sbjct: 7 ILLTGTPGVGKT-TLGKELASKSGLKYINVG 36
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major
[TaxId: 5664]}
Length = 174
Score = 32.7 bits (73), Expect = 0.18
Identities = 10/25 (40%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Query: 755 QPQG-HLLLIGVSGAGKTTLSRFVA 778
QP+G ++L+ G G GKT+++ +A
Sbjct: 2 QPKGINILITGTPGTGKTSMAEMIA 26
Score = 28.0 bits (61), Expect = 5.9
Identities = 14/97 (14%), Positives = 34/97 (35%), Gaps = 12/97 (12%)
Query: 46 LMMVGPSGSGKSTAWKVLLKALERYEGVEGVAHIIDPKAISKEALYGVLDPNTREWTDGL 105
+++ G G+GK++ +++ L+ + ++ + KE + T T+
Sbjct: 8 ILITGTPGTGKTSMAEMIAAELDGF-------QHLEVGKLVKENHF-----YTEYDTELD 55
Query: 106 FTHILRRIIDNVRGEISKRQWIIFDGDVDPEWVENLN 142
I + D + + + VD E
Sbjct: 56 THIIEEKDEDRLLDFMEPIMVSRGNHVVDYHSSELFP 92
Score = 28.0 bits (61), Expect = 6.8
Identities = 12/115 (10%), Positives = 33/115 (28%), Gaps = 11/115 (9%)
Query: 419 LVLCGPPGSGKTMTLLSAL-RALPDMEVVSLNFSSATTPELLLKTFDHYCEYRKTPNGVI 477
+++ G PG+GKT ++ + L + + + + + +
Sbjct: 8 ILITGTPGTGKT-SMAEMIAAELDGFQHLEVGKLVKENHFYTEYDTELDTHIIEEKDEDR 66
Query: 478 LSPI---QLGKWLVLFCDEINLPDMDKYATQRVISF------LRQLIEQRGFYRP 523
L + D + + V+ L + + +R +
Sbjct: 67 LLDFMEPIMVSRGNHVVDYHSSELFPERWFHMVVVLHTSTEVLFERLTKRQYSEA 121
>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni
[TaxId: 197]}
Length = 161
Score = 32.6 bits (73), Expect = 0.19
Identities = 19/148 (12%), Positives = 33/148 (22%), Gaps = 14/148 (9%)
Query: 417 KPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTPELLLKTFDHYCEYRKTPNGV 476
K +V G GSGK+ TL AL D+ + +F +K
Sbjct: 1 KNIVFIGFMGSGKS-TLARALAKDLDLVFLDSDF------------LIEQKFNQKVSEIF 47
Query: 477 ILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGF-YRPADKQWVSLERIQ 535
+ + +E+ GF +R+
Sbjct: 48 EQKRENFFREQEQKMADFFSSCEKACIATGGGFVNVSNLEKAGFCIYLKADFEYLKKRLD 107
Query: 536 CVGACNPPTDPGRKPLSHRFLRHVPVIY 563
P + +
Sbjct: 108 KDEISKRPLFYDEIKAKKLYNERLSKYE 135
Score = 31.4 bits (70), Expect = 0.48
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 760 LLLIGVSGAGKTTLSRFVAFMNGLSVFQIRAHNKY 794
++ IG G+GK+TL+R +A L +
Sbjct: 3 IVFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQ 37
Score = 28.7 bits (63), Expect = 4.1
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 46 LMMVGPSGSGKSTAWKVLLKALERY 70
++ +G GSGKST + L K L+
Sbjct: 3 IVFIGFMGSGKSTLARALAKDLDLV 27
>d1k1ga_ d.51.1.1 (A:) RNA splicing factor 1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 122
Score = 31.7 bits (72), Expect = 0.21
Identities = 13/71 (18%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 1068 LKEMIKDQQEAEKRKVQSQDIQAEIEKQTVEIAQKRVFVMEDLAQVEPAVMDAQQAVKEI 1127
+KE +++ + + + + A + T+E +K V + ++ + + Q ++
Sbjct: 50 VKEGKVGRKDGQMLPGEDEPLHALVTANTMENVKKAVEQIRNILKQGIETPEDQN---DL 106
Query: 1128 KKQQLVELRSM 1138
+K QL EL +
Sbjct: 107 RKMQLRELARL 117
>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 165
Score = 32.3 bits (72), Expect = 0.25
Identities = 9/35 (25%), Positives = 19/35 (54%)
Query: 760 LLLIGVSGAGKTTLSRFVAFMNGLSVFQIRAHNKY 794
+L+G+ G+GK+T+ R +A G+ + +
Sbjct: 4 AVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQ 38
Score = 28.4 bits (62), Expect = 5.1
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 419 LVLCGPPGSGKTMTLLSALRALPDMEVVSLNF 450
VL G PGSGK+ T+ L + ++ +
Sbjct: 4 AVLVGLPGSGKS-TIGRRLAKALGVGLLDTDV 34
Score = 27.6 bits (60), Expect = 7.3
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 46 LMMVGPSGSGKSTAWKVLLKALER 69
++VG GSGKST + L KAL
Sbjct: 4 AVLVGLPGSGKSTIGRRLAKALGV 27
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 32.3 bits (72), Expect = 0.25
Identities = 12/138 (8%), Positives = 36/138 (26%), Gaps = 3/138 (2%)
Query: 46 LMMVGPSGSGKSTAWKVLLKALERYEGVEGVAHIIDPKAISKEALYGVLDPNTREWTDGL 105
+++ G G GK+T K +++ L + + DP+ + G T
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKR---TGFRIITTEGKKKIF 59
Query: 106 FTHILRRIIDNVRGEISKRQWIIFDGDVDPEWVENLNSVLDDNKLLTLPNGERLSLPPNI 165
+ ++ + + + ++ L
Sbjct: 60 SSKFFTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFR 119
Query: 166 RIMFEVQDLKYATLATVS 183
++ ++ +
Sbjct: 120 DLVRQIMHDPNVNVVATI 137
Score = 30.0 bits (66), Expect = 1.7
Identities = 8/47 (17%), Positives = 13/47 (27%)
Query: 759 HLLLIGVSGAGKTTLSRFVAFMNGLSVFQIRAHNKYTGADFDEDLRT 805
+++ G G GKTTL + + G
Sbjct: 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFR 48
Score = 28.4 bits (62), Expect = 5.0
Identities = 8/19 (42%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
Query: 419 LVLCGPPGSGKTMTLLSAL 437
+++ G PG GKT TL+ +
Sbjct: 3 IIITGEPGVGKT-TLVKKI 20
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis
C virus (HCV), different isolates [TaxId: 11103]}
Length = 136
Score = 31.8 bits (71), Expect = 0.25
Identities = 10/61 (16%), Positives = 18/61 (29%), Gaps = 5/61 (8%)
Query: 415 EHKPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTPELLLKTFDHYCEYRKTPN 474
+ L P GSGK+ + +A A +V + L + +
Sbjct: 7 SFQVAHLHAPTGSGKSTKVPAAYAAQGYKVLV-----LNPSVAATLGFGAYMSKAHGVDP 61
Query: 475 G 475
Sbjct: 62 N 62
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Escherichia coli [TaxId: 562]}
Length = 256
Score = 32.9 bits (75), Expect = 0.26
Identities = 37/176 (21%), Positives = 64/176 (36%), Gaps = 48/176 (27%)
Query: 417 KPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSAT------TPELLLKTFDHYCEYR 470
K +++ GPPG+GKT+ L A+ + +++ S + F+ + +
Sbjct: 46 KGVLMVGPPGTGKTL-LAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFE---QAK 101
Query: 471 KTPNGVILSPIQLGKWLVLFCDEI--------NLPDMDKYATQRVISFLRQLIEQRGFYR 522
K +P ++F DEI ++ ++ + L+E GF
Sbjct: 102 K------AAP------CIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQM--LVEMDGFE- 146
Query: 523 PADKQWVSLERIQCVGACNPPT--DPG-RKPLSHRFLRHVPVIYVDYPGETSLKQI 575
E I + A N P DP +P RF R + V P +QI
Sbjct: 147 -------GNEGIIVIAATNRPDVLDPALLRP--GRFDRQ---VVVGLPDVRGREQI 190
Score = 31.0 bits (70), Expect = 1.0
Identities = 19/86 (22%), Positives = 35/86 (40%), Gaps = 5/86 (5%)
Query: 741 EVLDHVLRIDRIFRQPQGHLLLIGVSGAGKTTLSRFVAFMNGLSVFQIRAH---NKYTGA 797
E L R ++ + +L++G G GKT L++ +A + F I + G
Sbjct: 29 EYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVG- 87
Query: 798 DFDEDLRTVLRRSGCKNEKIAFLLDE 823
+R + ++ I F +DE
Sbjct: 88 VGASRVRDMFEQAKKAAPCIIF-IDE 112
>d1bifa1 c.37.1.7 (A:37-249)
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase,
kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 213
Score = 32.6 bits (73), Expect = 0.29
Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 4/31 (12%)
Query: 46 LMMVGPSGSGKSTAWKVLLKALERYEGVEGV 76
++MVG GK+ + K L RY GV
Sbjct: 5 IVMVGLPARGKTY----ISKKLTRYLNFIGV 31
Score = 28.8 bits (63), Expect = 4.2
Identities = 5/19 (26%), Positives = 13/19 (68%)
Query: 760 LLLIGVSGAGKTTLSRFVA 778
++++G+ GKT +S+ +
Sbjct: 5 IVMVGLPARGKTYISKKLT 23
Score = 28.0 bits (61), Expect = 8.8
Identities = 16/96 (16%), Positives = 33/96 (34%), Gaps = 2/96 (2%)
Query: 419 LVLCGPPGSGKTMTLLSAL-RALPDMEVVSLNFSSATTPELLLKTFDHYCEYRKTPNGVI 477
+V+ G P GKT + L R L + V + F+ ++KT+ + + +
Sbjct: 5 IVMVGLPARGKT-YISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGL 63
Query: 478 LSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQ 513
Q + + + A + R+
Sbjct: 64 KIRKQCALAALNDVRKFLSEEGGHVAVFDATNTTRE 99
>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 182
Score = 32.3 bits (72), Expect = 0.29
Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 6/59 (10%)
Query: 417 KPLVLCGPPGSGKTMTLLSALRA-LPDMEVVSLNFSSATTPELLLKTFDHYCEYRKTPN 474
+ +VL GP GK+ T++ LR +P++ SATT D + P
Sbjct: 3 RVVVLSGPSAVGKS-TVVRCLRERIPNLHFS----VSATTRAPRPGEVDGVDYHFIDPT 56
Score = 30.3 bits (67), Expect = 1.1
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 7/43 (16%)
Query: 45 GLMMV--GPSGSGKSTAWKVLLKAL-ERYEGVEGVAHIIDPKA 84
G ++V GPS GKST +++ L ER +
Sbjct: 2 GRVVVLSGPSAVGKST----VVRCLRERIPNLHFSVSATTRAP 40
Score = 29.2 bits (64), Expect = 2.9
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 760 LLLIGVSGAGKTTLSRFVAFMNGLSVFQIRAHN 792
++L G S GK+T+ R + F + A
Sbjct: 5 VVLSGPSAVGKSTVVRCLRERIPNLHFSVSATT 37
>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3'
phosphatase, C-terminal domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 172
Score = 32.1 bits (72), Expect = 0.30
Identities = 11/73 (15%), Positives = 23/73 (31%), Gaps = 6/73 (8%)
Query: 46 LMMVGPSGSGKSTAWKVLLKAL------ERYEGVEGVAHIIDPKAISKEALYGVLDPNTR 99
++ VG G+GKST + L + G A+ + + + N
Sbjct: 17 VVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTLGSWQRCVSSCQAALRQGKRVVIDNTNPD 76
Query: 100 EWTDGLFTHILRR 112
+ + +
Sbjct: 77 VPSRARYIQCAKD 89
Score = 31.8 bits (71), Expect = 0.42
Identities = 19/136 (13%), Positives = 36/136 (26%), Gaps = 9/136 (6%)
Query: 413 LAEHKP--LVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTPELLLKTFDHYCEYR 470
L P +V G PG+GK+ T + V+ + + + + +
Sbjct: 9 LLSPNPEVVVAVGFPGAGKS-TFIQEHLVSAGYVHVNRDT--LGSWQRCVSSCQAALRQG 65
Query: 471 KTP--NGVILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQW 528
K + +++ D + I R R P+
Sbjct: 66 KRVVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCAT--IEQARHNNRFREMTDPSHAPV 123
Query: 529 VSLERIQCVGACNPPT 544
+ PPT
Sbjct: 124 SDMVMFSYRKQFEPPT 139
Score = 28.7 bits (63), Expect = 4.5
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 760 LLLIGVSGAGKTTLSRFVAFMNGLSVF 786
++ +G GAGK+T + G
Sbjct: 17 VVAVGFPGAGKSTFIQEHLVSAGYVHV 43
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export
ATP-binding/permease protein SAV1866 {Staphylococcus
aureus [TaxId: 1280]}
Length = 255
Score = 32.5 bits (74), Expect = 0.31
Identities = 16/70 (22%), Positives = 26/70 (37%), Gaps = 6/70 (8%)
Query: 49 VGPSGSGKSTAWKVLLKALERYEGVEGVAHIIDPKAISKEALYGVLDPNTREWTDGLFTH 108
VG SG GKST L+ + R+ V +ID I + + D +
Sbjct: 50 VGMSGGGKST----LINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFS 105
Query: 109 ILRRIIDNVR 118
+ +N+
Sbjct: 106 --DTVKENIL 113
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus
voltae [TaxId: 2188]}
Length = 190
Score = 32.3 bits (72), Expect = 0.33
Identities = 14/126 (11%), Positives = 37/126 (29%)
Query: 47 MMVGPSGSGKSTAWKVLLKALERYEGVEGVAHIIDPKAISKEALYGVLDPNTREWTDGLF 106
++ G G G +T+ ++ + L + + + V D + D
Sbjct: 5 VVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVSDRDQMRKMDPET 64
Query: 107 THILRRIIDNVRGEISKRQWIIFDGDVDPEWVENLNSVLDDNKLLTLPNGERLSLPPNIR 166
++++ E++K + D + L L L + +
Sbjct: 65 QKRIQKMAGRKIAEMAKESPVAVDTHSTVSTPKGYLPGLPSWVLNELNPDLIIVVETTGD 124
Query: 167 IMFEVQ 172
+ +
Sbjct: 125 EILMRR 130
Score = 29.6 bits (65), Expect = 2.6
Identities = 8/33 (24%), Positives = 14/33 (42%), Gaps = 3/33 (9%)
Query: 761 LLIGVSGAGKTTLSRFVAFM---NGLSVFQIRA 790
++ GV G G TT S+ G++ +
Sbjct: 5 VVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSF 37
Score = 28.8 bits (63), Expect = 4.4
Identities = 8/22 (36%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
Query: 416 HKPLVLCGPPGSGKTMTLLSAL 437
+K +V+ G PG G T T
Sbjct: 1 NKVVVVTGVPGVGST-TSSQLA 21
>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli
[TaxId: 562]}
Length = 169
Score = 32.0 bits (71), Expect = 0.34
Identities = 9/34 (26%), Positives = 17/34 (50%)
Query: 759 HLLLIGVSGAGKTTLSRFVAFMNGLSVFQIRAHN 792
++ L+G GAGK+T+ R +A + +
Sbjct: 4 NIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEI 37
Score = 30.9 bits (68), Expect = 0.86
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 415 EHKPLVLCGPPGSGKTMTLLSALRALPDMEVVSLN 449
E + + L GP G+GK+ T+ L +ME +
Sbjct: 1 EKRNIFLVGPMGAGKS-TIGRQLAQQLNMEFYDSD 34
Score = 28.9 bits (63), Expect = 3.3
Identities = 14/110 (12%), Positives = 35/110 (31%), Gaps = 4/110 (3%)
Query: 46 LMMVGPSGSGKSTAWKVLLKALERYEGVEGVAHIIDPKAISKEALYGVLDPNTREWTDGL 105
+ +VGP G+GKST + + L + +E + + + + V D E
Sbjct: 5 IFLVGPMGAGKST----IGRQLAQQLNMEFYDSDQEIEKRTGADVGWVFDLEGEEGFRDR 60
Query: 106 FTHILRRIIDNVRGEISKRQWIIFDGDVDPEWVENLNSVLDDNKLLTLPN 155
++ + + ++ + + V + +
Sbjct: 61 EEKVINELTEKQGIVLATGGGSVKSRETRNRLSARGVVVYLETTIEKQLA 110
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo
sapiens), ARL5A [TaxId: 9606]}
Length = 177
Score = 31.9 bits (71), Expect = 0.34
Identities = 11/31 (35%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 748 RIDRIFRQPQGHLLLIGVSGAGKTTL-SRFV 777
RI R+F + ++++G+ AGKTT+ +F
Sbjct: 6 RIWRLFNHQEHKVIIVGLDNAGKTTILYQFS 36
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Escherichia coli [TaxId:
562]}
Length = 170
Score = 31.9 bits (71), Expect = 0.36
Identities = 18/120 (15%), Positives = 34/120 (28%), Gaps = 12/120 (10%)
Query: 760 LLLIGVSGAGKTTLSRFVA------------FMNGLSVFQIRAHNKYTGADFDEDLRTVL 807
L SG GKTTL + + + + K + +
Sbjct: 5 LAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHDMDVDKPGKDSYELRKAGAAQTI 64
Query: 808 RRSGCKNEKIAFLLDESNVLESGFLERMNTLLANGEIPGLFEGDEYTTLMTQCKEGAQRE 867
S + + DE + RM+T + + F+ +E ++ R
Sbjct: 65 VASQQRWALMTETPDEEELDLQFLASRMDTSKLDLILVEGFKHEEIAKIVLFRDGAGHRP 124
Score = 29.9 bits (66), Expect = 1.7
Identities = 10/51 (19%), Positives = 16/51 (31%), Gaps = 4/51 (7%)
Query: 49 VGPSGSGKSTAWKVLLKALERYEGVEGVAHIIDPKAISKEALYGVLDPNTR 99
SG+GK+T LLK L G+ + + +
Sbjct: 8 AAWSGTGKTT----LLKKLIPALCARGIRPGLIKHTHHDMDVDKPGKDSYE 54
Score = 29.6 bits (65), Expect = 1.9
Identities = 9/19 (47%), Positives = 10/19 (52%), Gaps = 1/19 (5%)
Query: 419 LVLCGPPGSGKTMTLLSAL 437
L G+GKT TLL L
Sbjct: 5 LAFAAWSGTGKT-TLLKKL 22
>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter,
ATP-binding protein {Methanosarcina acetivorans [TaxId:
2214]}
Length = 229
Score = 32.3 bits (73), Expect = 0.37
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 762 LIGVSGAGKTTLSRFVAFMNGLSVFQIRAHNKY 794
++G +GAGKT +A + +I K
Sbjct: 31 ILGPTGAGKTLFLELIAGFHVPDSGRILLDGKD 63
Score = 32.0 bits (72), Expect = 0.49
Identities = 26/161 (16%), Positives = 42/161 (26%), Gaps = 18/161 (11%)
Query: 419 LVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTPELLLKTFDHYCEYRKTPNGVIL 478
V+ GP G+GKT L + + + L K + V
Sbjct: 29 FVILGPTGAGKT-LFLELI--------AGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQ 79
Query: 479 SPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPAD------KQWVSLE 532
+ V E + +RV+ R L + R +Q V+L
Sbjct: 80 NYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALA 139
Query: 533 RIQCVGACNPPTD---PGRKPLSHRFLRHVPVIYVDYPGET 570
R D P + R + + T
Sbjct: 140 RALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLT 180
Score = 30.4 bits (68), Expect = 1.3
Identities = 6/26 (23%), Positives = 15/26 (57%), Gaps = 4/26 (15%)
Query: 46 LMMVGPSGSGKSTAWKVLLKALERYE 71
+++GP+G+GK+ L+ + +
Sbjct: 29 FVILGPTGAGKTL----FLELIAGFH 50
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 189
Score = 31.9 bits (71), Expect = 0.40
Identities = 25/170 (14%), Positives = 39/170 (22%), Gaps = 23/170 (13%)
Query: 417 KPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSAT----------TPELLLKTFDHY 466
+ + L GPPG GKT + A L V F + L T
Sbjct: 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPL 61
Query: 467 CEYRKTPNGVILSPIQLGKWL---------VLFCDEINLPDMDKYATQRVISFLRQLIEQ 517
P + + + + + +
Sbjct: 62 SRVGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFS 121
Query: 518 RGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLRH--VPVIYVD 565
+ F A +Q +S +G P L V V V
Sbjct: 122 QLF-IQAVRQTLSTPGTIILGTIPVPKG-KPLALVEEIRNRKDVKVFNVT 169
Score = 30.8 bits (68), Expect = 1.00
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 759 HLLLIGVSGAGKTTLSRFVA 778
H+ L G G GKTTL +
Sbjct: 3 HVFLTGPPGVGKTTLIHKAS 22
Score = 28.4 bits (62), Expect = 5.3
Identities = 9/34 (26%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 46 LMMVGPSGSGKST-AWKVLLKALERYEGVEGVAH 78
+ + GP G GK+T K V+G
Sbjct: 4 VFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYT 37
>d1kgsa1 a.4.6.1 (A:124-225) PhoB {Thermotoga maritima [TaxId:
2336]}
Length = 102
Score = 30.5 bits (68), Expect = 0.47
Identities = 12/83 (14%), Positives = 26/83 (31%), Gaps = 2/83 (2%)
Query: 144 VLDDNKLLTLPNGERLSLPPNIRIMFEVQDLKYATLATVSRCGMIWFSEDVLSTEMIFEN 203
+LD + + L + E + + T +S D + +
Sbjct: 12 ILDTATKKAYRGSKEIDLTKKEYQILEYLVMNKNRVVTKEELQEHLWSFDDEVFSDVLRS 71
Query: 204 YLSRLRNIALDDIDDDSSLLITV 226
++ LR +D ++ TV
Sbjct: 72 HIKNLRK-KVDK-GFKKKIIHTV 92
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine
permease {Salmonella typhimurium [TaxId: 90371]}
Length = 258
Score = 32.1 bits (73), Expect = 0.47
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Query: 49 VGPSGSGKSTAWKVLLKALERYEGVEGVAHIIDPKAISK 87
+G SGSGKST L+ + E A I++ + I+
Sbjct: 34 IGSSGSGKST----FLRCINFLEKPSEGAIIVNGQNINL 68
Score = 31.4 bits (71), Expect = 0.79
Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 18/83 (21%)
Query: 741 EVLDHV-LRIDRIFRQPQGHLL-LIGVSGAGKTTLSRFVAFM----------NGLSVFQI 788
EVL V L+ G ++ +IG SG+GK+T R + F+ NG ++ +
Sbjct: 16 EVLKGVSLQA------RAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLV 69
Query: 789 RAHNKYTGADFDEDLRTVLRRSG 811
R + LR + R
Sbjct: 70 RDKDGQLKVADKNQLRLLRTRLT 92
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding
protein 1 (GBP1), C-terminal domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 300
Score = 32.0 bits (72), Expect = 0.49
Identities = 18/128 (14%), Positives = 49/128 (38%), Gaps = 5/128 (3%)
Query: 1009 NHFVKLYREKCSELEEQQLHLNVGLGKIAETVEQVEEMQKSLAVKSQELQSKNEAANLKL 1068
++ Y + + + L + L + + +E +S ++ L +
Sbjct: 175 EEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMM 234
Query: 1069 KEMIKDQQEAEKRKVQSQDIQAEIEKQTVEIAQKRVFVMEDLAQVEPAVMDAQQAVKEIK 1128
++ + QE K+ + + E ++ + Q+R + L + E + + Q I
Sbjct: 235 EQKERSYQEHLKQLTE----KMENDRVQLLKEQERT-LALKLQEQEQLLKEGFQKESRIM 289
Query: 1129 KQQLVELR 1136
K ++ +L+
Sbjct: 290 KNEIQDLQ 297
Score = 31.3 bits (70), Expect = 0.89
Identities = 13/104 (12%), Positives = 38/104 (36%), Gaps = 13/104 (12%)
Query: 1006 DFINHFVKLYREKCSELEEQQLHLNVGLGKIAETVEQVEEMQKSLAVKSQELQSKNEAAN 1065
+++ R K + L+ + + +E+ ++S ++L K E
Sbjct: 200 TEKEKEIEVERVKAESAQASAKMLHE---MQRKNEQMMEQKERSYQEHLKQLTEKMENDR 256
Query: 1066 LKLKEMIKDQQEA----------EKRKVQSQDIQAEIEKQTVEI 1099
++L + + E + +S+ ++ EI+ ++
Sbjct: 257 VQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTKM 300
>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding
protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId:
2234]}
Length = 240
Score = 31.9 bits (72), Expect = 0.49
Identities = 10/35 (28%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 744 DHVLRIDRIFRQPQGHLLLIGVSGAGKTTLSRFVA 778
+ L +D F + + +L+G +GAGK+ +A
Sbjct: 13 NFRLNVD--FEMGRDYCVLLGPTGAGKSVFLELIA 45
Score = 30.4 bits (68), Expect = 1.5
Identities = 7/24 (29%), Positives = 13/24 (54%), Gaps = 4/24 (16%)
Query: 48 MVGPSGSGKSTAWKVLLKALERYE 71
++GP+G+GKS L+ +
Sbjct: 29 LLGPTGAGKSV----FLELIAGIV 48
Score = 28.1 bits (62), Expect = 7.9
Identities = 8/19 (42%), Positives = 11/19 (57%), Gaps = 1/19 (5%)
Query: 419 LVLCGPPGSGKTMTLLSAL 437
VL GP G+GK+ L +
Sbjct: 27 CVLLGPTGAGKS-VFLELI 44
>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga
maritima [TaxId: 2336]}
Length = 238
Score = 31.9 bits (72), Expect = 0.50
Identities = 15/81 (18%), Positives = 33/81 (40%), Gaps = 4/81 (4%)
Query: 48 MVGPSGSGKSTAWKVLLKALERYEG---VEGVAHIIDPKAISKEALYGVLDPN-TREWTD 103
++GP+G+GK+T +++ ++ G V G + +P + K Y + R
Sbjct: 33 LIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQG 92
Query: 104 GLFTHILRRIIDNVRGEISKR 124
+ + + EI +
Sbjct: 93 IEYLRFVAGFYASSSSEIEEM 113
Score = 30.3 bits (68), Expect = 1.7
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 8/40 (20%)
Query: 741 EVLDHV-LRIDRIFRQPQGHLL-LIGVSGAGKTTLSRFVA 778
E+L + I +G + LIG +GAGKTT R ++
Sbjct: 16 EILKGISFEI------EEGEIFGLIGPNGAGKTTTLRIIS 49
>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 232
Score = 31.8 bits (72), Expect = 0.57
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
Query: 46 LMMVGPSGSGKSTAWKVLLKALERYEGVEGVAHIID 81
++ VGPSG GKST LL+ + E + I
Sbjct: 29 VVFVGPSGCGKST----LLRMIAGLETITSGDLFIG 60
Score = 31.5 bits (71), Expect = 0.67
Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 8/55 (14%)
Query: 741 EVLDHV-LRIDRIFRQPQGHLL-LIGVSGAGKTTLSRFVAFMNGLSVFQIRAHNK 793
V + L I +G + +G SG GK+TL R +A + ++ + K
Sbjct: 14 VVSKDINLDI------HEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEK 62
Score = 29.9 bits (67), Expect = 2.1
Identities = 21/123 (17%), Positives = 37/123 (30%), Gaps = 16/123 (13%)
Query: 419 LVLCGPPGSGKTMTLLSALRAL--PDMEVVSLNFSSATTPELLLKTFDHYCEYRKTPNGV 476
+V GP G GK+ TLL + L + + + +
Sbjct: 29 VVFVGPSGCGKS-TLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSY------ 81
Query: 477 ILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQL-IEQRGFYRPAD-----KQWVS 530
L P + F ++ + QRV L + +P +Q V+
Sbjct: 82 ALYPHLSVAENMSFGLKLA-GAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVA 140
Query: 531 LER 533
+ R
Sbjct: 141 IGR 143
>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 31.7 bits (70), Expect = 0.59
Identities = 29/184 (15%), Positives = 43/184 (23%), Gaps = 9/184 (4%)
Query: 756 PQGHLLLI-GVSGAGKTTLSRFVAFMNGLSVFQIRAHNKYT-----GADFDEDLRTVLRR 809
G + + G GKT + +A L + + K G E L V R
Sbjct: 21 ETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAER 80
Query: 810 SGCKNEKIA---FLLDESNVLESGFLERMNTLLANGEIPGLFEGDEYTTLMTQCKEGAQR 866
G + N L + + L D T L G
Sbjct: 81 YGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGE 140
Query: 867 EGLMLDSNEELYKWFTQQVMKNLHVVFTMNPSSEGLKDRAATSPALFNRCVLNWFGDWSD 926
+ + + V N + A + N S
Sbjct: 141 LSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHAST 200
Query: 927 TALY 930
T LY
Sbjct: 201 TRLY 204
>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12
uptake, BtuD {Escherichia coli [TaxId: 562]}
Length = 231
Score = 31.4 bits (71), Expect = 0.60
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 4/27 (14%)
Query: 49 VGPSGSGKSTAWKVLLKALERYEGVEG 75
VGP+G+GKST LL + +G
Sbjct: 31 VGPNGAGKST----LLARMAGMTSGKG 53
Score = 29.1 bits (65), Expect = 3.9
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 762 LIGVSGAGKTTLSRFVA 778
L+G +GAGK+TL +A
Sbjct: 30 LVGPNGAGKSTLLARMA 46
>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15
homolog {Human (Homo sapiens) [TaxId: 9606]}
Length = 258
Score = 31.6 bits (70), Expect = 0.64
Identities = 26/198 (13%), Positives = 44/198 (22%), Gaps = 13/198 (6%)
Query: 746 VLRIDRIFRQ--PQGHLLLI-GVSGAGKTTLSRFVAFMNGLSVFQIRAHNKYTGADFDED 802
D++ + G GKT LS + L K D +
Sbjct: 23 SQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENT 82
Query: 803 LRTVLRRSGCKNEKIAFLLDESNVLES------GFLERMNTLLANGEI----PGLFEGDE 852
R R + NVL + +E ++ + A L D
Sbjct: 83 FRPDRLRDIADRFNVDHDAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDS 142
Query: 853 YTTLMTQCKEGAQREGLMLDSNEELYKWFTQQVMKNLHVVFTMNPSSEGLKDRAATSPAL 912
L G ++ + + VF N +
Sbjct: 143 IMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTADPGATMTFQADP 202
Query: 913 FNRCVLNWFGDWSDTALY 930
+ S T +
Sbjct: 203 KKPIGGHILAHASTTRIS 220
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus
halodurans [TaxId: 86665]}
Length = 176
Score = 31.2 bits (69), Expect = 0.66
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 46 LMMVGPSGSGKSTAWKVLLKALER 69
++ GP+G GKST K L L+
Sbjct: 5 YIITGPAGVGKSTTCKRLAAQLDN 28
Score = 31.2 bits (69), Expect = 0.68
Identities = 7/27 (25%), Positives = 14/27 (51%)
Query: 760 LLLIGVSGAGKTTLSRFVAFMNGLSVF 786
++ G +G GK+T + +A S +
Sbjct: 5 YIITGPAGVGKSTTCKRLAAQLDNSAY 31
Score = 30.0 bits (66), Expect = 1.5
Identities = 20/121 (16%), Positives = 38/121 (31%), Gaps = 7/121 (5%)
Query: 417 KPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTPELLLKTFDHYCEYRKTPNGV 476
K ++ GP G GK+ T L A D +++ + E + +
Sbjct: 3 KLYIITGPAGVGKS-TTCKRLAAQLDNSAYI---EGDIINHMVVGGYRPPWESDE---LL 55
Query: 477 ILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQC 536
L+ + V F N +D A L Q ++ + + R +
Sbjct: 56 ALTWKNITDLTVNFLLAQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREEL 115
Query: 537 V 537
+
Sbjct: 116 L 116
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance
regulator, CFTR, nucleotide-binding domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 281
Score = 31.8 bits (72), Expect = 0.66
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 49 VGPSGSGKSTAWKVLLKALERYEG 72
G +GSGK++ ++L LE EG
Sbjct: 68 TGSTGSGKTSLLMLILGELEASEG 91
Score = 28.7 bits (64), Expect = 4.8
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 8/40 (20%)
Query: 741 EVLDHV-LRIDRIFRQPQGHLL-LIGVSGAGKTTLSRFVA 778
VL ++ L I +G +L + G +G+GKT+L +
Sbjct: 50 PVLKNINLNI------EKGEMLAITGSTGSGKTSLLMLIL 83
>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 584
Score = 32.1 bits (72), Expect = 0.74
Identities = 59/536 (11%), Positives = 158/536 (29%), Gaps = 93/536 (17%)
Query: 1068 LKEMIKD-----QQEAEKRKVQ--SQDIQAEI-EKQTVEIAQKRVFVME----------- 1108
L I D +EAE +++ +I+++ + ++ K+ +V +
Sbjct: 5 LAVFISDIRNCKSKEAEIKRINKELANIRSKFKGDKALDGYSKKKYVCKLLFIFLLGHDI 64
Query: 1109 DLAQVEPAVMDAQQAVKEIKKQQLVELRSMANP-PSVVKLALESICLLLGENATDWKAIR 1167
D +E AV K+ + + + N +++L +I L
Sbjct: 65 DFGHME-AVNLLSSNRYTEKQIGYLFISVLVNSNSELIRLINNAIKNDLASRNPT---FM 120
Query: 1168 AVVMRENFINSIVSNFNTEMITDEVREKMHSRYLSNPDYSYEKANRASMACGPMVKWAIA 1227
+ + I ++ S E E+ K+ + A++ + + +
Sbjct: 121 GLALH--CIANVGSREMAEAFAGEIP-KILVAGDTMDSVKQS----AALCLLRLYRTSPD 173
Query: 1228 QISYADMLKKVEPLRLELKSLEVQASENKAKGEETKDLITQLEKSIASYKDEYAQLIAQA 1287
+ D +V L L + L V + + + + S++ ++++ A
Sbjct: 174 LVPMGDWTSRVVHL-LNDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSA 232
Query: 1288 TAIKTDLDNVQAKFYEYAQLIAQATAIKTDLDNVQAKVERSMALLKSLGIERERWEATSE 1347
+ D + + + ++ + L + L + + +
Sbjct: 233 STDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGR----LTECLETILNKAQEPPK 288
Query: 1348 TFRSQMATIIGDVLLSSAYLAYAGYFDQHYRQSLFSTWNSHLIAAGIQFRPEIALTEYLS 1407
+ + Q + VL + L + + + L ++L
Sbjct: 289 SKKVQHSNAKNAVLFEAISLIIHHDSEPNLLVRACN-----------------QLGQFLQ 331
Query: 1408 SPDERLRWQGNALPSDHLCTENAIMLRRFNRYPLIIDPSGQATEFILKEFESRKITKTSF 1467
+ LR+ L + + F+ + E ++ KT
Sbjct: 332 HRETNLRYLA-------LESMCTLASSEFSHEAVK-----THIETVINAL------KTER 373
Query: 1468 LDDAFRKNLESALRFGNPLLVQDVENYDTILNPVL------NRELRRTGGRVLITLGDQD 1521
++ ++ + N I+ +L + +R +++ +
Sbjct: 374 DVSVRQRAVDLLYAMCDR------SNAQQIVAEMLSYLETADYSIRE---EIVLKVAILA 424
Query: 1522 IDISPTFVIFLST-----RDPTVEFPPDICSRVTFVNFTVTRSSLQSQCLNRVLKA 1572
+ + ++ T R ++ R + + R +Q V +A
Sbjct: 425 EKYAVDYTWYVDTILNLIRIAGDYVSEEVWYR--VIQIVINRDDVQGYAAKTVFEA 478
>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId:
562]}
Length = 205
Score = 31.0 bits (69), Expect = 0.85
Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 4/40 (10%)
Query: 417 KPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFS-SATT 455
++ P G+GK+ +L+ AL + S S TT
Sbjct: 3 TLYIVSAPSGAGKS-SLIQALLK--TQPLYDTQVSVSHTT 39
Score = 30.6 bits (68), Expect = 1.1
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 46 LMMVGPSGSGKSTAWKVLLKALERYEGVEGVAHI 79
++ PSG+GKS+ + LLK Y+ V+H
Sbjct: 5 YIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHT 38
Score = 29.0 bits (64), Expect = 3.3
Identities = 9/20 (45%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Query: 757 QGHLL-LIGVSGAGKTTLSR 775
QG L + SGAGK++L +
Sbjct: 1 QGTLYIVSAPSGAGKSSLIQ 20
>d1opca_ a.4.6.1 (A:) OmpR {Escherichia coli [TaxId: 562]}
Length = 99
Score = 29.7 bits (66), Expect = 0.88
Identities = 10/83 (12%), Positives = 25/83 (30%), Gaps = 1/83 (1%)
Query: 144 VLDDNKLLTLPNGERLSLPPNIRIMFEVQDLKYATLATVSRCGMIWFSEDVLSTEMIFEN 203
L+ E + L + + + + + + + E +
Sbjct: 8 KLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKLMNLARGREYSAMERSIDV 67
Query: 204 YLSRLRNIALDDIDDDSSLLITV 226
+SRLR +++ + TV
Sbjct: 68 QISRLRR-MVEEDPAHPRYIQTV 89
>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 198
Score = 30.9 bits (68), Expect = 0.91
Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
Query: 740 DEVLDHVLRIDRIFRQPQGHLLLIGVSG---AGKTTLSRFVA 778
+ +D + + I L++G+ G +GKTTL+ ++
Sbjct: 4 RDRIDFLCK--TILAIKTAGRLVLGIDGLSRSGKTTLANQLS 43
Score = 29.0 bits (63), Expect = 3.5
Identities = 14/84 (16%), Positives = 25/84 (29%), Gaps = 5/84 (5%)
Query: 50 GPSGSGKSTAWKVLLKALERYEGVEGVAHIID-----PKAISKEALYGVLDPNTREWTDG 104
G S SGK+T L + L V H+ D K + +
Sbjct: 29 GLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYHTGNEEWFEYYYLQWDVEW 88
Query: 105 LFTHILRRIIDNVRGEISKRQWII 128
L + R++ + + +
Sbjct: 89 LTHQLFRQLKASHQLTLPFYDHET 112
>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus
stearothermophilus, PcrA [TaxId: 1422]}
Length = 318
Score = 31.1 bits (69), Expect = 0.91
Identities = 29/229 (12%), Positives = 72/229 (31%), Gaps = 10/229 (4%)
Query: 414 AEHKPLVLCGPPGSGKTMTLLSALRAL------PDMEVVSLNFSSATTPELLLKTFDHYC 467
PL++ GSGKT L + L ++++ F++ E+ +
Sbjct: 22 TTEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLLG 81
Query: 468 EYRKTPNGVILSPIQLGKWLVLFCDEINL-PDMDKYATQRVISFLRQLIEQRGFYRPADK 526
+ + + + L D I + + +S ++ +++++ +
Sbjct: 82 GAAEDVWISTFHSMCV-RILRRDIDRIGINRNFSILDPTDQLSVMKTILKEKNIDPKKFE 140
Query: 527 QWVSLERIQCVGACNPPTDPGRKPLSHRFLRHVPVIYVDYPGETSLKQIYGTFSRAMLRL 586
L I P + K S + + V +Y +Y + L + + ++
Sbjct: 141 PRTILGTISAAKNELLPPEQFAKRASTYYEKVVSDVYQEY--QQRLLRNHSLDFDDLIMT 198
Query: 587 IPPLRGYADALTNAMVELYLASQEKFTQDMQPHYVYSPREMTRWVRGIC 635
L + + + QD +++ + IC
Sbjct: 199 TIQLFDRVPDVLHYYQYKFQYIHIDEYQDTNRAQYTLVKKLAERFQNIC 247
Score = 28.1 bits (61), Expect = 9.5
Identities = 32/267 (11%), Positives = 76/267 (28%), Gaps = 16/267 (5%)
Query: 751 RIFRQPQGHLLLIGVSGAGKT-TLSRFVAFM---NGLSVFQIRA--HNKYTGADFDEDLR 804
R +G LL++ +G+GKT L+ +A++ ++ + I A + E ++
Sbjct: 18 EAVRTTEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQ 77
Query: 805 TVLRRSGCKNEKIAFLLDESNVLESGFLERMNTLLANGEIPGLFEGDEYTTLMTQCKEGA 864
++L + F + + L R + + + + ++M +
Sbjct: 78 SLLGGAAEDVWISTF-----HSMCVRILRRDIDRIGINRNFSILDPTDQLSVMKTILKEK 132
Query: 865 QREGLMLDSNEELYKWFTQQVMKNLHVVFTMNPSSEGLKDRAATSPALFNRCVLNWFGDW 924
+ + L + F S+ K + R + N D+
Sbjct: 133 NIDPKKFEPRTILGTISAAKNELLPPEQFAKRASTYYEKVVSDVYQEYQQRLLRNHSLDF 192
Query: 925 SDTALYQVAKEFTSKIDLDGPQNWKAPDFFPSVCSLVSTTPSHRDSVINACVYVHQTLHK 984
D + + L Q + + +
Sbjct: 193 DDLIMTTIQLFDRVPDVLHYYQYKFQYIHIDEYQDTNRAQYTLVKKLAERFQNICAVGDA 252
Query: 985 ANARLSKRGSRTMAITPRHYLDFINHF 1011
+ RG+ ++ L F +
Sbjct: 253 DQSIYRWRGAD-----IQNILSFERDY 274
>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia
coli, RepD [TaxId: 562]}
Length = 306
Score = 31.2 bits (69), Expect = 0.93
Identities = 30/290 (10%), Positives = 65/290 (22%), Gaps = 18/290 (6%)
Query: 414 AEHKPLVLCGPPGSGKTMTLLSALRAL------PDMEVVSLNFSSATTPELLLKTFDHYC 467
P ++ GSGKT + + + L + ++ F++ E+ +
Sbjct: 12 FVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLG 71
Query: 468 EYRKTPNGVILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQ 527
+ + + + G
Sbjct: 72 RKEARGLMISTFHTLGLDIIKREYAALGMKANFSLFDDTDQ-LALLKELTEGLIEDDKVL 130
Query: 528 WVSLERIQCVGACNPPTDPGRKPLSHRFLRHVPVIYVDYPGETSLKQIYGTFSRAMLRLI 587
L + T + + F +L
Sbjct: 131 LQQLISTISNWKNDLKTPSQAAASAIGERDRIFAHCYGLYDAHLKACNVLDFDDLILLPT 190
Query: 588 PPLRGYADALTN--AMVELYLASQEKFT---QDMQPHYVYSPREMTRWVRGICEAIRPLE 642
L+ + + L + + T Q + R V ++I
Sbjct: 191 LLLQANEEVRKRWQNKIRYLLVDEYQDTNTSQYELVKLLVGSRARFTVVGDDDQSIYSWR 250
Query: 643 SLTVEGLVRLWAHEALRLFQDRLVNDVERQW-TNENIDAVAMKYFSNIDK 691
+ LV L F V +E+ + ++ I A +N
Sbjct: 251 GARPQNLVLLSQD-----FPALKVIKLEQNYRSSGRILKAANILIANNPH 295
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus
acidocaldarius [TaxId: 2285]}
Length = 194
Score = 30.8 bits (68), Expect = 0.95
Identities = 21/195 (10%), Positives = 46/195 (23%), Gaps = 19/195 (9%)
Query: 47 MMVGPSGSGKSTAWKVLLKAL-ERYEGVEGVA--HIIDPKAISKEALYGVLDPNTREWTD 103
++ G G GKST + + L + + + + A+ +
Sbjct: 5 IVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRDEMRKLSVEK 64
Query: 104 GL--FTHILRRIIDNVRGEISKRQWIIFDGDVDPEWVENLNSVLDDNKLLTLPNGERLSL 161
+ I + R +I + + L
Sbjct: 65 QKKLQIDAAKGIAEEARAGGEGYLFIDTHAVIRTPSGYLPGLPSYVITEINPSVIFLLEA 124
Query: 162 PPNIRIMFEVQDLKYATLATVSRCGMIWFSEDVLSTEMIFENYLSRLRNIALDDIDDDSS 221
P I + + +D + + S E + ++ R A S
Sbjct: 125 DPKIILSRQKRDTTR--------------NRNDYSDESVILETINFARYAATASAVLAGS 170
Query: 222 LLITVDATGKAPDDV 236
+ + P
Sbjct: 171 TVKVIVNVEGDPSIA 185
Score = 30.0 bits (66), Expect = 1.8
Identities = 8/46 (17%), Positives = 17/46 (36%), Gaps = 3/46 (6%)
Query: 761 LLIGVSGAGKTTLSRFVAFM---NGLSVFQIRAHNKYTGADFDEDL 803
++ G+ G GK+T+ V + G++ I +
Sbjct: 5 IVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGY 50
Score = 27.7 bits (60), Expect = 9.6
Identities = 8/21 (38%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Query: 417 KPLVLCGPPGSGKTMTLLSAL 437
K ++ G PG GK+ T+L+ +
Sbjct: 2 KIGIVTGIPGVGKS-TVLAKV 21
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR,
ribosylnicotinamide kinase domain {Haemophilus
influenzae [TaxId: 727]}
Length = 192
Score = 30.8 bits (68), Expect = 0.98
Identities = 17/150 (11%), Positives = 36/150 (24%), Gaps = 10/150 (6%)
Query: 417 KPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTPELLLKTFDHYCEYRKTPNGV 476
K + + G SGK+ L++ L A+ F++ + E + +
Sbjct: 8 KTVAILGGESSGKS-VLVNKLAAV---------FNTTSAWEYGREFVFEKLGGDEQAMQY 57
Query: 477 ILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQC 536
P + + I+ I+ G P +
Sbjct: 58 SDYPQMALGHQRYIDYAVRHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDV 117
Query: 537 VGACNPPTDPGRKPLSHRFLRHVPVIYVDY 566
T+ L + +
Sbjct: 118 TILLKNNTEWVDDGLRSLGSQKQRQQFQQL 147
Score = 27.7 bits (60), Expect = 9.9
Identities = 7/33 (21%), Positives = 10/33 (30%), Gaps = 4/33 (12%)
Query: 48 MVGPSGSGKSTAWKVLLKALERYEGVEGVAHII 80
++G SGKS L+ L
Sbjct: 12 ILGGESSGKSV----LVNKLAAVFNTTSAWEYG 40
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase
domain {Simian virus 40 [TaxId: 10633]}
Length = 362
Score = 31.2 bits (70), Expect = 1.0
Identities = 9/44 (20%), Positives = 16/44 (36%), Gaps = 1/44 (2%)
Query: 416 HKPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTPELL 459
+ + GP SGKT + L + +++N L
Sbjct: 154 KRYWLFKGPIDSGKTTLAAALLELC-GGKALNVNLPLDRLNFEL 196
Score = 30.0 bits (67), Expect = 2.6
Identities = 17/93 (18%), Positives = 34/93 (36%), Gaps = 3/93 (3%)
Query: 700 YSNWLSKNYVPVGTTELREYVQARLKVFYEEELDVQLVLFDEVLDHVLRIDRIFRQPQGH 759
+++ L + + G+T + + V L L D V+ L+ + +
Sbjct: 100 FNDLLDRMDIMFGSTGSADIEEWMAGV---AWLHCLLPKMDSVVYDFLKCMVYNIPKKRY 156
Query: 760 LLLIGVSGAGKTTLSRFVAFMNGLSVFQIRAHN 792
L G +GKTTL+ + + G +
Sbjct: 157 WLFKGPIDSGKTTLAAALLELCGGKALNVNLPL 189
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955
{Pyrococcus abyssi [TaxId: 29292]}
Length = 244
Score = 31.1 bits (69), Expect = 1.0
Identities = 16/86 (18%), Positives = 28/86 (32%), Gaps = 12/86 (13%)
Query: 420 VLCGPPGSGKTMTLLSALR----ALPDMEVVSLNFSSATTP-------ELLLKTFDHYCE 468
V G GSGKT TL + V+L+ P + + E
Sbjct: 4 VFVGTAGSGKT-TLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMRE 62
Query: 469 YRKTPNGVILSPIQLGKWLVLFCDEI 494
++ S +L + + ++I
Sbjct: 63 GYGPNGAIVESYDRLMEKFNEYLNKI 88
Score = 30.0 bits (66), Expect = 1.9
Identities = 13/46 (28%), Positives = 17/46 (36%), Gaps = 4/46 (8%)
Query: 49 VGPSGSGKSTAWKVLLKALERYEGVEGVAHIIDPKAISKEALYGVL 94
VG +GSGK+T L RY ++ KE Y
Sbjct: 6 VGTAGSGKTT----LTGEFGRYLEDNYKVAYVNLDTGVKELPYEPS 47
>d3b8pa1 d.58.60.1 (A:54-292) Chain length determinant protein WzzB
{Salmonella typhimurium [TaxId: 90371]}
Length = 239
Score = 30.7 bits (69), Expect = 1.1
Identities = 16/92 (17%), Positives = 31/92 (33%), Gaps = 5/92 (5%)
Query: 1250 VQASENKAKGEETKDLITQLEKSIASYKDEYAQLIAQATAIKTDLDNVQAKFYEYAQLIA 1309
+Q + + E DL + + ++ A K +++ K E A A
Sbjct: 99 IQQVDEEVAKELEVDLKDNITLQTKTLQESLETQEVVAQEQK----DLRIKQIEEALRYA 154
Query: 1310 QATAIKT-DLDNVQAKVERSMALLKSLGIERE 1340
I + Q + +M LL S ++
Sbjct: 155 DEAKITQPQIQQTQDVTQDTMFLLGSDALKSM 186
>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022,
N-terminal domain {Pyrococcus horikoshii [TaxId:
53953]}
Length = 239
Score = 30.9 bits (70), Expect = 1.1
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 46 LMMVGPSGSGKSTAWKVLLKALERYEG 72
L+++GPSG GK+T +++ E EG
Sbjct: 35 LVLLGPSGCGKTTTLRMIAGLEEPTEG 61
Score = 29.0 bits (65), Expect = 4.4
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 762 LIGVSGAGKTTLSRFVAFMNGLSVFQIRAHNK 793
L+G SG GKTT R +A + + +I ++
Sbjct: 37 LLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDR 68
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta,
toxin zeta subunit {Streptococcus pyogenes [TaxId:
1314]}
Length = 273
Score = 30.7 bits (68), Expect = 1.2
Identities = 5/26 (19%), Positives = 12/26 (46%)
Query: 45 GLMMVGPSGSGKSTAWKVLLKALERY 70
++ G GSGK++ + + +
Sbjct: 34 AFLLGGQPGSGKTSLRSAIFEETQGN 59
Score = 29.5 bits (65), Expect = 2.8
Identities = 9/30 (30%), Positives = 12/30 (40%)
Query: 417 KPLVLCGPPGSGKTMTLLSALRALPDMEVV 446
+L G PGSGKT + +V
Sbjct: 33 TAFLLGGQPGSGKTSLRSAIFEETQGNVIV 62
Score = 29.5 bits (65), Expect = 3.2
Identities = 15/105 (14%), Positives = 42/105 (40%), Gaps = 12/105 (11%)
Query: 722 ARLKVFYEEELDVQLVLFDEVLDHVLRIDRIFRQPQGHLLLIGVSGAGKTTLSRFVA--- 778
A + F +++ + +L ++ L+ +++ + P LL G G+GKT+L +
Sbjct: 1 ANIVNFTDKQFENRL---NDNLEELIQGKKAVESPTA-FLLGGQPGSGKTSLRSAIFEET 56
Query: 779 -----FMNGLSVFQIRAHNKYTGADFDEDLRTVLRRSGCKNEKIA 818
++ + Q + +++D+ + + +
Sbjct: 57 QGNVIVIDNDTFKQQHPNFDELVKLYEKDVVKHVTPYSNRMTEAI 101
>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic
domain {Archaeon Methanococcus voltae [TaxId: 2188]}
Length = 258
Score = 30.8 bits (68), Expect = 1.2
Identities = 23/171 (13%), Positives = 42/171 (24%), Gaps = 7/171 (4%)
Query: 397 VPTLDTVRHESLLYTWLAEHKPLVLCGPPGSGKT-MTLLSALRALPDMEVVSLNFSSATT 455
LD+ +L L G GSGKT + S + + + +
Sbjct: 20 SSELDS-----VLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKG 74
Query: 456 PELLLKTFDHYCEYRKTPNGVILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLI 515
K E P ++ G D + Q + + + +
Sbjct: 75 EVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTVLDNTFVARAYNSDMQMLFAEKIEDL 134
Query: 516 EQRGFYRPADKQWVSLERIQCVGACNPPTDPGRKPLSHRFLRHVPVIYVDY 566
Q G SL R+ R + + + +
Sbjct: 135 IQEG-NNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLNKLADLF 184
>g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 292
Score = 30.9 bits (68), Expect = 1.3
Identities = 9/30 (30%), Positives = 17/30 (56%)
Query: 750 DRIFRQPQGHLLLIGVSGAGKTTLSRFVAF 779
D + +G L+IG +G+GK++L +
Sbjct: 16 DTVVEFKEGINLIIGQNGSGKSSLLDAILV 45
Score = 30.5 bits (67), Expect = 1.7
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 49 VGPSGSGKSTAWKVLLKAL 67
+G +GSGKS+ +L L
Sbjct: 29 IGQNGSGKSSLLDAILVGL 47
Score = 28.2 bits (61), Expect = 8.3
Identities = 8/19 (42%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
Query: 420 VLCGPPGSGKTMTLLSALR 438
++ G GSGK+ +LL A+
Sbjct: 27 LIIGQNGSGKS-SLLDAIL 44
>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 181
Score = 30.3 bits (67), Expect = 1.3
Identities = 26/178 (14%), Positives = 60/178 (33%), Gaps = 15/178 (8%)
Query: 46 LMMVGPSGSGKSTAWKVLLKALERYEGVEGVAHI----IDPKAISKEALYGVLDPNTREW 101
++++GP G+GK T L + L G+ I + + I + GV +
Sbjct: 3 VLLLGPPGAGKGTQAVKLAEKL-------GIPQISTGELFRRNIEEGTKLGVEAKRYLDA 55
Query: 102 TDGLFTHILRRIIDNVRGEISKRQWIIFDGDVDPEWVENLNSVLDDNKLLTLPNGERLSL 161
D + + + ++D+ I DG + + + + +
Sbjct: 56 GDLVPSDLTNELVDDRLNNPDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRV 115
Query: 162 PPNIRIMFEVQDLKYATLATVSRCGMIWFSEDVLSTEMIFENYLSRLRNI-ALDDIDD 218
+ + + V M + + T + E Y +L+ + A+ +D+
Sbjct: 116 SEEVLLERLKGRGRADDTDDVILNRMKVYRD---ETAPLLEYYRDQLKTVDAVGTMDE 170
Score = 27.9 bits (61), Expect = 7.1
Identities = 7/12 (58%), Positives = 10/12 (83%)
Query: 419 LVLCGPPGSGKT 430
++L GPPG+GK
Sbjct: 3 VLLLGPPGAGKG 14
Score = 27.9 bits (61), Expect = 8.1
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 759 HLLLIGVSGAGKTTLSRFVA 778
+LL+G GAGK T + +A
Sbjct: 2 RVLLLGPPGAGKGTQAVKLA 21
>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia
coli [TaxId: 562]}
Length = 179
Score = 30.3 bits (67), Expect = 1.4
Identities = 23/191 (12%), Positives = 54/191 (28%), Gaps = 23/191 (12%)
Query: 46 LMMVGPSGSGKSTAWKVLLKALERYEGVEGVAHIIDPKAISKEALYGVLDPNTREWTDGL 105
++++G +GK T + +++ G+ I + G ++ D +
Sbjct: 3 IILLGAPVAGKGTQAQFIMEKY-------GIPQISTGDMLRAAVKSG--SELGKQAKDIM 53
Query: 106 FTHILRRIIDNVRGEISKRQWIIFDGDVDPEWVENLNSVLDDNKLLTLPNGERLSLPPNI 165
L D + + K + D + + + +
Sbjct: 54 DAGKLVT--DELVIALVKERIAQED------CRNGFLLDGFPRTIPQADAMKEAGINVDY 105
Query: 166 RIMFEVQDLKYATLATVSRCGMIWFSEDVLSTEMIFENYLSRLRNIALDDIDDDSSLLIT 225
+ F+V D R E V + + + L + + ++
Sbjct: 106 VLEFDVPDELIVD-----RIVKDDQEETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKYAK 160
Query: 226 VDATGKAPDDV 236
VD T +V
Sbjct: 161 VDGTKP-VAEV 170
Score = 28.4 bits (62), Expect = 4.7
Identities = 11/69 (15%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Query: 760 LLLIGVSGAGKTTLSRFVAFMNGL---SVFQIRAHNKYTGADFDEDLRTVLRRSGCKNEK 816
++L+G AGK T ++F+ G+ S + +G++ + + ++ ++
Sbjct: 3 IILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDE 62
Query: 817 IAFLLDESN 825
+ L +
Sbjct: 63 LVIALVKER 71
Score = 28.0 bits (61), Expect = 6.3
Identities = 5/12 (41%), Positives = 8/12 (66%)
Query: 419 LVLCGPPGSGKT 430
++L G P +GK
Sbjct: 3 IILLGAPVAGKG 14
>d1bf5a1 a.47.1.1 (A:136-316) STAT-1, coiled coil domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 181
Score = 30.2 bits (68), Expect = 1.4
Identities = 20/142 (14%), Positives = 63/142 (44%), Gaps = 10/142 (7%)
Query: 1017 EKCSELEEQQLHLNVGLGKIAETVEQVEEMQKSLAVKSQELQSKNEAANLKLKEMIKDQQ 1076
+K EL+ + ++ + I ++ +E++Q K + LQ++ N +
Sbjct: 2 DKQKELDSKVRNVKDKVMCIEHEIKSLEDLQDEYDFKCKTLQNREHETNGVA------KS 55
Query: 1077 EAEKRKVQSQDIQAEIEKQTVEIAQKRVFVMEDLAQVEPAVMDAQQAVKEIKKQQLVELR 1136
+ ++ ++ + + ++ + E+ K + ++ + A+++ + E K++Q +
Sbjct: 56 DQKQEQLLLKKMYLMLDNKRKEVVHKIIELLNVTELTQNALIN--DELVEWKRRQ--QSA 111
Query: 1137 SMANPPSVVKLALESICLLLGE 1158
+ PP+ L++ ++ E
Sbjct: 112 CIGGPPNACLDQLQNWFTIVAE 133
>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum
[TaxId: 44689]}
Length = 194
Score = 30.3 bits (67), Expect = 1.4
Identities = 24/177 (13%), Positives = 54/177 (30%), Gaps = 19/177 (10%)
Query: 413 LAEHKPLV--LCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTPELLLKTFDHYCEYR 470
+ + KP V + G PGSGK T + + +S +LL + +
Sbjct: 1 MEKSKPNVVFVLGGPGSGKG-TQCANIVRDFGWVHLS-------AGDLLRQEQQSGSKDG 52
Query: 471 KTPNGVILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVS 530
+ +I + + + + + + L++ + W
Sbjct: 53 EMIATMIKNGEIVPSIVTVKLLKNAIDANQGK---------NFLVDGFPRNEENNNSWEE 103
Query: 531 LERIQCVGACNPPTDPGRKPLSHRFLRHVPVIYVDYPGETSLKQIYGTFSRAMLRLI 587
+ D + ++ R L+ S+K+ + TF+ +I
Sbjct: 104 NMKDFVDTKFVLFFDCPEEVMTQRLLKRGESSGRSDDNIESIKKRFNTFNVQTKLVI 160
Score = 28.0 bits (61), Expect = 7.8
Identities = 12/101 (11%), Positives = 36/101 (35%), Gaps = 11/101 (10%)
Query: 46 LMMVGPSGSGKSTAWKVLLKALERYEGVEGVAHIIDPKAISKEALY----GVLDPNTREW 101
+ ++G GSGK T +++ G H+ + +E G + +
Sbjct: 9 VFVLGGPGSGKGTQCANIVRDF-------GWVHLSAGDLLRQEQQSGSKDGEMIATMIKN 61
Query: 102 TDGLFTHILRRIIDNVRGEISKRQWIIFDGDVDPEWVENLN 142
+ + + + +++ N + +++ + E +
Sbjct: 62 GEIVPSIVTVKLLKNAIDANQGKNFLVDGFPRNEENNNSWE 102
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895
{Pyrococcus furiosus [TaxId: 2261]}
Length = 200
Score = 30.3 bits (68), Expect = 1.5
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 4/33 (12%)
Query: 49 VGPSGSGKSTAWKVLLKALERYEGVEGVAHIID 81
GP+G GK+T LLK + Y I +
Sbjct: 33 HGPNGIGKTT----LLKTISTYLKPLKGEIIYN 61
Score = 29.1 bits (65), Expect = 2.9
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 762 LIGVSGAGKTTLSRFVAFMNGLSVFQIRAHNK 793
G +G GKTTL + ++ +I +
Sbjct: 32 FHGPNGIGKTTLLKTISTYLKPLKGEIIYNGV 63
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal
recognition particle receptor FtsY {Thermotoga maritima
[TaxId: 2336]}
Length = 213
Score = 30.1 bits (67), Expect = 1.5
Identities = 7/23 (30%), Positives = 11/23 (47%), Gaps = 2/23 (8%)
Query: 413 LAEHKPLV--LCGPPGSGKTMTL 433
+ P V + G G+GKT +
Sbjct: 6 VPPEPPFVIMVVGVNGTGKTTSC 28
Score = 28.2 bits (62), Expect = 6.4
Identities = 7/13 (53%), Positives = 12/13 (92%)
Query: 46 LMMVGPSGSGKST 58
+M+VG +G+GK+T
Sbjct: 14 IMVVGVNGTGKTT 26
>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain
{Lactobacillus casei [TaxId: 1582]}
Length = 176
Score = 29.9 bits (67), Expect = 1.5
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 43 NHGLMMVGPSGSGKST 58
G+++ G SG GKS
Sbjct: 14 GLGVLITGDSGVGKSE 29
>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain
{Staphylococcus xylosus [TaxId: 1288]}
Length = 169
Score = 29.9 bits (67), Expect = 1.7
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 43 NHGLMMVGPSGSGKST 58
G+++ G SG GKS
Sbjct: 15 GVGVLITGDSGIGKSE 30
>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain
{Mycoplasma pneumoniae [TaxId: 2104]}
Length = 177
Score = 29.9 bits (67), Expect = 1.7
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 43 NHGLMMVGPSGSGKST 58
G+++ G SG GKS
Sbjct: 15 GVGVLLTGRSGIGKSE 30
>d1j8ba_ d.222.1.1 (A:) Hypothetical protein HI0442 {Haemophilus
influenzae [TaxId: 727]}
Length = 92
Score = 28.5 bits (64), Expect = 1.7
Identities = 18/103 (17%), Positives = 43/103 (41%), Gaps = 17/103 (16%)
Query: 1036 IAETVEQVEEMQKSLAVKSQELQSKN---EAANLKLKEMIKDQQEAEKRKVQSQDIQAEI 1092
+ ++Q ++MQ+ + +E+ E+ +K I + DI +
Sbjct: 1 LGGLMKQAQQMQEKMQKMQEEIAQLEVTGESGAGLVKITINGAHN-----CRRIDIDPSL 55
Query: 1093 EKQTVEIAQKRVFVMEDLAQVEPAVMDAQQAVKEIKKQQLVEL 1135
+ E+ +EDL + A DA + +E++K+++ +
Sbjct: 56 MEDDKEM-------LEDL--IAAAFNDAVRRAEELQKEKMASV 89
>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter
{Thermotoga maritima, TM1139 [TaxId: 2336]}
Length = 240
Score = 30.3 bits (68), Expect = 1.7
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 762 LIGVSGAGKTTLSRFVAFMNGLSVFQIRAHNKY 794
LIG +GAGKTT +A + +I + +
Sbjct: 37 LIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQD 69
Score = 28.0 bits (62), Expect = 7.8
Identities = 5/16 (31%), Positives = 11/16 (68%)
Query: 48 MVGPSGSGKSTAWKVL 63
++G +G+GK+T +
Sbjct: 37 LIGANGAGKTTTLSAI 52
>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId:
9606]}
Length = 194
Score = 29.9 bits (66), Expect = 1.7
Identities = 25/214 (11%), Positives = 60/214 (28%), Gaps = 29/214 (13%)
Query: 46 LMMVGPSGSGKSTAWKVLLKALERYEGVEGVAHIIDPKAISKEALYGVLDPNTREWTDGL 105
+ ++G G+GK T +++ G H+ + + E
Sbjct: 4 VFVLGGPGAGKGTQCARIVEKY-------GYTHLSAGELLRDERKN---------PDSQY 47
Query: 106 FTHILRRIIDNVRGEISKRQWIIFDGDVDPEWVENL-NSVLDDNKLLTLPNGERLS--LP 162
I + I + + ++ N L D N + + +
Sbjct: 48 GELIEKYIKEGKIVPVEITISLLKREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMD 107
Query: 163 PNIRIMFEV-QDLKYATLATVSRCGMIWFSEDVLSTEMIFENYLSRLRNIA-LDDIDDDS 220
+ F + D + E + + + L++ + D+ ++
Sbjct: 108 GKADVSFVLFFDCNNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQSTKPIIDLYEEM 167
Query: 221 SLLITVDATGKAPDDVLSPALTLQQDVASILSTH 254
+ +DA+ D+V +V I
Sbjct: 168 GKVKKIDASKS-VDEV-------FDEVVQIFDKE 193
>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein
MetN {Escherichia coli [TaxId: 562]}
Length = 240
Score = 30.2 bits (68), Expect = 1.8
Identities = 19/77 (24%), Positives = 30/77 (38%), Gaps = 2/77 (2%)
Query: 753 FRQPQGHLL-LIGVSGAGKTTLSRFVAFMNGLSVFQIRAHNKYTGADFDEDLRTVLRRSG 811
P G + +IG SGAGK+TL R V + + + + + +L R+ G
Sbjct: 26 LHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIG 85
Query: 812 CKNEKIAFLLDESNVLE 828
+ LL V
Sbjct: 86 MIFQHFN-LLSSRTVFG 101
>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId:
1313]}
Length = 223
Score = 30.0 bits (66), Expect = 1.8
Identities = 37/212 (17%), Positives = 63/212 (29%), Gaps = 33/212 (15%)
Query: 50 GPSGSGKSTAWKVLLKALERYEGVEGVAHIIDP----KAISKEALYGVLDPNTREWTDGL 105
GP+ SGKST K++ K G + +D +A + AL L E L
Sbjct: 10 GPASSGKSTVAKIIAKDF-------GFTY-LDTGAMYRAATYMALKNQLGVEEVEALLAL 61
Query: 106 --FTHILRRIIDNVRGEISKRQWIIFDGDVDPEWVENLNSVLDDNK-----------LLT 152
I + + I + E V N S + +
Sbjct: 62 LDQHPISFGRSETGDQLVFVGDVDITHPIRENE-VTNHVSAIAAIPEVREKLVSLQQEIA 120
Query: 153 LPNGERLSLPPNIRIMFEVQDLKYATLATVSRCGMI-WFSEDVLSTEMIFENYLSRLRNI 211
G + ++ +LK +A+V + E E +
Sbjct: 121 QQGGIVMDGRDIGTVVLPQAELKIFLVASVDERAERRYKENIAKGIETDLETLKKEIAAR 180
Query: 212 ALDDIDDDSSLL------ITVDATGKAPDDVL 237
D ++S L + +D TG +V+
Sbjct: 181 DYKDSHRETSPLKQAEDAVYLDTTGLNIQEVV 212
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal
recognition particle receptor FtsY {Escherichia coli
[TaxId: 562]}
Length = 211
Score = 30.0 bits (67), Expect = 1.9
Identities = 8/23 (34%), Positives = 11/23 (47%), Gaps = 2/23 (8%)
Query: 413 LAEHKPLV--LCGPPGSGKTMTL 433
+ P V + G G GKT T+
Sbjct: 4 VEGKAPFVILMVGVNGVGKTTTI 26
Score = 28.9 bits (64), Expect = 4.7
Identities = 7/13 (53%), Positives = 11/13 (84%)
Query: 46 LMMVGPSGSGKST 58
++MVG +G GK+T
Sbjct: 12 ILMVGVNGVGKTT 24
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 29.9 bits (66), Expect = 2.0
Identities = 13/79 (16%), Positives = 31/79 (39%), Gaps = 9/79 (11%)
Query: 392 ASDVVVPT----LDTVRHESLLYTWLAEHKPLVLCGPPGSGKTMTLLSALRALPDMEVVS 447
+S+V V + LD + + ++ G G+GKT+ + + + +
Sbjct: 3 SSNVRVSSGVVRLD-----EMCGGGFFKDSIILATGATGTGKTLLVSRFVENACANKERA 57
Query: 448 LNFSSATTPELLLKTFDHY 466
+ F+ + LL+ +
Sbjct: 58 ILFAYEESRAQLLRNAYSW 76
>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides
[TaxId: 1063]}
Length = 288
Score = 30.3 bits (68), Expect = 2.0
Identities = 15/90 (16%), Positives = 30/90 (33%), Gaps = 10/90 (11%)
Query: 762 LIGV---SGAGKTTLSRFVAFMNGLSVFQIRA----HNKYTGADFDEDLRTVLRRSGCKN 814
+I V SGAG +T+ F ++A + + + + + RR +
Sbjct: 6 IISVTGSSGAGTSTVKH--TFDQIFRREGVKAVSIEGDAFHRFNRADMKAELDRRYAAGD 63
Query: 815 EKIAFLLDESNVLESGFLERMNTLLANGEI 844
+ E+N L+ G+
Sbjct: 64 ATFSHFSYEANELKE-LERVFREYGETGQG 92
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus)
[TaxId: 10029]}
Length = 186
Score = 29.7 bits (65), Expect = 2.2
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 753 FRQPQGHLLLIGVSGAGKTTL 773
+ G L+ +G+ AGKTTL
Sbjct: 9 LYKKTGKLVFLGLDNAGKTTL 29
>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 254
Score = 29.9 bits (67), Expect = 2.4
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 49 VGPSGSGKSTAWKVLLKALERYEG 72
+GP+GSGKST V+ L+ EG
Sbjct: 36 IGPNGSGKSTLINVITGFLKADEG 59
Score = 29.6 bits (66), Expect = 2.9
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 762 LIGVSGAGKTTLSRFVA 778
+IG +G+GK+TL +
Sbjct: 35 IIGPNGSGKSTLINVIT 51
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence
recognition protein Ffh {Thermus aquaticus [TaxId:
271]}
Length = 207
Score = 29.7 bits (66), Expect = 2.6
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 46 LMMVGPSGSGKST 58
+VG GSGK+T
Sbjct: 13 WFLVGLQGSGKTT 25
Score = 27.8 bits (61), Expect = 8.3
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 760 LLLIGVSGAGKTT 772
L+G+ G+GKTT
Sbjct: 13 WFLVGLQGSGKTT 25
Score = 27.8 bits (61), Expect = 9.4
Identities = 9/21 (42%), Positives = 10/21 (47%)
Query: 413 LAEHKPLVLCGPPGSGKTMTL 433
L + L G GSGKT T
Sbjct: 7 LKDRNLWFLVGLQGSGKTTTA 27
>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 29.6 bits (65), Expect = 2.6
Identities = 22/150 (14%), Positives = 48/150 (32%), Gaps = 12/150 (8%)
Query: 749 IDRIFRQ--PQGHLLLI-GVSGAGKTTLSRFVAFMNGLSVFQIRAHNKYTGADFDEDLRT 805
D I P G L+ G SG GKT S + I F+E +
Sbjct: 15 FDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNG-----IIEFDEPGVFVTFEETPQD 69
Query: 806 VLRRSGCKNEKIAFLLDESNVLESGFLERMNTLLANGEIPGLFEGDEYTTLMTQCKEGAQ 865
+++ + + L + F+ + E+ G F+ + + +
Sbjct: 70 IIKNA----RSFGWDLAKLVDEGKLFILDASPDPEGQEVVGGFDLSALIERINYAIQKYR 125
Query: 866 REGLMLDSNEELYKWFTQQVMKNLHVVFTM 895
+ +DS +++ + + + +
Sbjct: 126 ARRVSIDSVTSVFQQYDASSVVRRELFRLV 155
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence
recognition protein Ffh {Archaeon Acidianus ambivalens
[TaxId: 2283]}
Length = 211
Score = 29.4 bits (65), Expect = 2.6
Identities = 8/24 (33%), Positives = 11/24 (45%), Gaps = 2/24 (8%)
Query: 412 WLAEHKPLV--LCGPPGSGKTMTL 433
+ + P V L G G+GK T
Sbjct: 6 VIPDKIPYVIMLVGVQGTGKATTA 29
Score = 29.0 bits (64), Expect = 4.3
Identities = 7/13 (53%), Positives = 11/13 (84%)
Query: 46 LMMVGPSGSGKST 58
+M+VG G+GK+T
Sbjct: 15 IMLVGVQGTGKAT 27
>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase
{Bacteriophage T4 [TaxId: 10665]}
Length = 241
Score = 29.5 bits (65), Expect = 2.8
Identities = 14/94 (14%), Positives = 21/94 (22%), Gaps = 10/94 (10%)
Query: 50 GPSGSGKSTAWKVLLKALERYEGVEGVAHIIDPKAISKEALYGVLDPNTREWTDGLFTHI 109
G SGK T ++ A K+AL T
Sbjct: 8 GVKRSGKDTTADFIMSNYS--------AVKYQLAGPIKDALAYAWGVFAANTDYPCLTRK 59
Query: 110 LRRIIDNVRGEISKRQW--IIFDGDVDPEWVENL 141
ID R +I + ++
Sbjct: 60 EFEGIDYDRETNLNLTKLEVITIMEQAFCYLNGK 93
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 166
Score = 29.3 bits (64), Expect = 2.8
Identities = 10/21 (47%), Positives = 12/21 (57%), Gaps = 1/21 (4%)
Query: 758 GHLLLIGVSGAGKTTL-SRFV 777
G LL +G+ AGKTTL
Sbjct: 1 GKLLFLGLDNAGKTTLLHMLK 21
>d3b8ma1 d.58.60.1 (A:64-330) Enterochelin transport protein FepE
{Escherichia coli [TaxId: 562]}
Length = 267
Score = 29.6 bits (66), Expect = 2.9
Identities = 16/87 (18%), Positives = 30/87 (34%), Gaps = 4/87 (4%)
Query: 1250 VQASENKAKGEETKDLITQLEKSIASYKDEYAQLIAQATAIKTDLDNVQAKFYEYAQLIA 1309
+ E +++ +LE K++ AQ + + + Y+ IA
Sbjct: 129 IDYISALVVKESIENVRNKLEIKTQFEKEKLAQDRIKMKNQL----DANIQRLNYSLDIA 184
Query: 1310 QATAIKTDLDNVQAKVERSMALLKSLG 1336
A IK + + V+ SLG
Sbjct: 185 NAAGIKKPVYSNGQAVKDDPDFSISLG 211
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 237
Score = 29.3 bits (64), Expect = 3.1
Identities = 11/51 (21%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 31 EKVLQLYQISNLNHGLMMVGPSGSGKSTAWKVLLKALERYEGVEGVAHIID 81
+ + + +NL H ++ GP G+GK++ L K L + ++ ++
Sbjct: 22 TVLKKTLKSANLPH-MLFYGPPGTGKTSTILALTKELYGPDLMKSRILELN 71
>d3b8oa1 d.58.60.1 (A:55-319) Lipopolysaccharide biosynthesis protein
WzzE {Escherichia coli [TaxId: 562]}
Length = 265
Score = 29.6 bits (66), Expect = 3.1
Identities = 14/74 (18%), Positives = 23/74 (31%), Gaps = 4/74 (5%)
Query: 1250 VQASENKAKGEETKDLITQLEKSIASYKDEYAQLIAQATAIKTDLDNVQAKFYEYAQLIA 1309
V + +A +L K + + A AI + + E A IA
Sbjct: 126 VAFASQRAASHLNDELKGAWAARTIQMKAQVKRQEEVAKAIY----DRRMNSIEQALKIA 181
Query: 1310 QATAIKTDLDNVQA 1323
+ I +V A
Sbjct: 182 EQHNISRSATDVPA 195
>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 208
Score = 29.3 bits (64), Expect = 3.2
Identities = 27/199 (13%), Positives = 45/199 (22%), Gaps = 14/199 (7%)
Query: 50 GPSGSGKSTAWKVLLKALER--------YEGVEGVAHIIDPKAISKEALYGVLDPNTREW 101
G G+GK T + L A G + D A + +G L +
Sbjct: 7 GVDGAGKRTLVEKLSGAFRAAGRSVATLAFPRYGQSVAADIAAEALHGEHGDLASSVYAM 66
Query: 102 TDGLFTHILRRIIDNVRGEISKRQWIIFDGDVDPEWV---ENLNSVLDDNKLLTLPNGER 158
LF + ++G +I D V L+ + E
Sbjct: 67 AT-LFALDRAGAVHTIQGLCRGYDVVILDRYVASNAAYSAARLHENAAGKAAAWVQRIEF 125
Query: 159 LSLPPNIRIMFEVQDLKYATLATVSRCGMIWFSEDVLSTEMIFENYLSRLRNIALDDID- 217
L + + SR R + +
Sbjct: 126 ARLGLPKPDWQVLLAVSAELAGERSRGRAQRDPGRARDNYERDAELQQRTGAVYAELAAQ 185
Query: 218 DDSSLLITVDATGKAPDDV 236
+ V A P +
Sbjct: 186 GWGGRWLVVGAD-VDPGRL 203
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 252
Score = 29.4 bits (64), Expect = 3.4
Identities = 10/37 (27%), Positives = 18/37 (48%)
Query: 31 EKVLQLYQISNLNHGLMMVGPSGSGKSTAWKVLLKAL 67
+ L L++ GP+G+GK T LL+++
Sbjct: 21 NFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESI 57
Score = 29.0 bits (63), Expect = 3.8
Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 5/47 (10%)
Query: 739 FDEVLDH---VLRIDRIFRQPQG--HLLLIGVSGAGKTTLSRFVAFM 780
+ + + + + QP+ HLLL G +G GK T +
Sbjct: 10 LNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLES 56
>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54
(NtrC1), C-terminal domain {Aquifex aeolicus [TaxId:
63363]}
Length = 247
Score = 29.5 bits (66), Expect = 3.4
Identities = 32/147 (21%), Positives = 58/147 (39%), Gaps = 18/147 (12%)
Query: 28 PWMEKVL-QLYQISNLNHGLMMVGPSGSGKSTAWKVLLKALER--YEGVEGVAHIIDPKA 84
P M+++L ++ +IS +++ G SG GK +++ K +R V I
Sbjct: 7 PKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDI 66
Query: 85 ISKEALYGVLDPNTREWTDGLFTHILRRIIDNVRGEISKRQWIIFD--GDVDPEWVENLN 142
E L+G + G FT + E++ + D G++ E L
Sbjct: 67 FEAE-LFG--------YEKGAFTGAVSSKEGFF--ELADGGTLFLDEIGELSLEAQAKLL 115
Query: 143 SVLDDNKLLTLPNGERLSLPPNIRIMF 169
V++ K G R + N+RI+
Sbjct: 116 RVIESGKF--YRLGGRKEIEVNVRILA 140
>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId:
10090]}
Length = 165
Score = 28.8 bits (63), Expect = 3.4
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 6/28 (21%)
Query: 751 RIFRQPQGHLLLIGVSGAGKTTL-SRFV 777
RIF+ +++IG S GKT L RF
Sbjct: 1 RIFK-----IIVIGDSNVGKTCLTYRFC 23
>d2f2ha1 b.150.1.1 (A:666-773) Putative glucosidase YicI,
C-terminal domain {Escherichia coli [TaxId: 562]}
Length = 108
Score = 27.8 bits (62), Expect = 3.5
Identities = 5/34 (14%), Positives = 18/34 (52%)
Query: 52 SGSGKSTAWKVLLKALERYEGVEGVAHIIDPKAI 85
+G+G++ W + L+ + + G++ + + +
Sbjct: 61 TGAGEAKNWTLCLRNVVKVNGLQDGSQAESEQGL 94
>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal
domain {Clostridium acetobutylicum [TaxId: 1488]}
Length = 141
Score = 28.5 bits (63), Expect = 3.5
Identities = 12/81 (14%), Positives = 22/81 (27%), Gaps = 4/81 (4%)
Query: 420 VLCGPPGSGKTMTLLSALRAL--PDMEVVSLNFSSATTPELLLKTF--DHYCEYRKTPNG 475
V+ GP SGK+ L+ +R ++ + N
Sbjct: 11 VIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSKEDVVSHMGEKEQAVAIKNS 70
Query: 476 VILSPIQLGKWLVLFCDEINL 496
+ V+ DE+
Sbjct: 71 REILKYFEEDTEVIAIDEVQF 91
>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain
{Human papillomavirus type 18 [TaxId: 333761]}
Length = 205
Score = 29.0 bits (65), Expect = 3.9
Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 409 LYTWL---AEHKPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSS 452
L ++L + LV CGP +GK+ +S + + + +N +S
Sbjct: 43 LKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVISFVNSTS 89
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III,
N-domain {Escherichia coli [TaxId: 562]}
Length = 239
Score = 28.9 bits (64), Expect = 3.9
Identities = 35/223 (15%), Positives = 71/223 (31%), Gaps = 25/223 (11%)
Query: 31 EKVLQLYQISNLNHGLMMVGPSGSGKSTAWKVLLKALERYEGVEGVAHIIDP--KAISKE 88
+ + ++H + G G GK++ ++L K L G+ + + I +
Sbjct: 22 TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQG 81
Query: 89 ALYGVLDPNTREWTDGLFTHILRRIIDNVR--GEISKRQWIIFDGDVDPEWVENLNSVLD 146
+++ + T R ++DNV+ + + + D V L+
Sbjct: 82 RFVDLIEIDAASRTK---VEDTRDLLDNVQYAPARGRFKVYLIDE------VHMLSRHS- 131
Query: 147 DNKLLTLPNGERLSLPPNIRIMFEVQDLKYATLATVSRCGMIWFSEDVLSTEMIFENYLS 206
N LL L PP T+ + + + + + L
Sbjct: 132 FNALLKT-----LEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL--DVEQIRHQLE 184
Query: 207 RLRNIALDDIDDDSSLLITVDATGKAPDDVLSPALTLQQDVAS 249
+ N + + L+ A + D LS Q +AS
Sbjct: 185 HILNEEHIAHEPRALQLL-ARAAEGSLRDALS---LTDQAIAS 223
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF1 [TaxId: 9606]}
Length = 160
Score = 28.5 bits (62), Expect = 4.0
Identities = 7/20 (35%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Query: 759 HLLLIGVSGAGKTTL-SRFV 777
+L++G+ AGKTT+ +
Sbjct: 2 RILMVGLDAAGKTTILYKLK 21
>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1
ATP synthase {Cow (Bos taurus) [TaxId: 9913]}
Length = 285
Score = 29.0 bits (65), Expect = 4.1
Identities = 14/77 (18%), Positives = 26/77 (33%), Gaps = 11/77 (14%)
Query: 758 GHLLLIGVSGAGKTTLSRFVAFMNGLSVFQIRAHNKYTGADFDEDLRTVLRRSGCKNEKI 817
L+IG GKT++ I G D + L + G K +
Sbjct: 69 QRELIIGDRQTGKTSI---------AIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTV 119
Query: 818 AFLLDESNVLESGFLER 834
A L+ + ++ ++
Sbjct: 120 AQLVKR--LTDADAMKY 134
>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 28.5 bits (62), Expect = 4.1
Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Query: 755 QPQGHLLLIGVSGAGKTTL-SRFV 777
Q Q L+L+G G GKTT R +
Sbjct: 1 QVQFKLVLVGDGGTGKTTFVKRHL 24
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 283
Score = 29.3 bits (64), Expect = 4.1
Identities = 9/61 (14%), Positives = 24/61 (39%), Gaps = 2/61 (3%)
Query: 749 IDRIFRQPQGHLLLIGVSGAGKTTLSRFVAFMNGLSVFQIRAHNKYTGADFDEDLRTVLR 808
I+++ L++G+ GK+++ + +N L++ I + + L
Sbjct: 21 IEKLKGLRAPITLVLGLRRTGKSSIIK--IGINELNLPYIYLDLRKFEERNYISYKDFLL 78
Query: 809 R 809
Sbjct: 79 E 79
Score = 28.2 bits (61), Expect = 8.4
Identities = 6/45 (13%), Positives = 14/45 (31%)
Query: 419 LVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTPELLLKTF 463
++ G +GK+ + + L + + K F
Sbjct: 32 TLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYISYKDF 76
Score = 28.2 bits (61), Expect = 8.9
Identities = 16/165 (9%), Positives = 46/165 (27%), Gaps = 5/165 (3%)
Query: 46 LMMVGPSGSGKSTAWKVLLKALERYEGVEGVAHIIDPKAISKEALYGVLDPNTREWTDGL 105
+++G +GKS+ ++K + + + Y ++ + L
Sbjct: 32 TLVLGLRRTGKSS----IIKIGINELNLPYIYLDLRKFEERNYISYKDFLLELQKEINKL 87
Query: 106 FTHILRRIIDNVRGEISKRQWIIFDGDVDPEWVENLNSVLDDNKLLTLPNGERLSLPPNI 165
+ + + + + + + ++L+ + + N +
Sbjct: 88 VKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQE 147
Query: 166 RIMFEVQDLKYATLATVSRCGMIWFSEDVLSTEMIFENYLSRLRN 210
+ +L A LA S + +YL
Sbjct: 148 LVKLRGVNLLPA-LAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDP 191
>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId:
9823]}
Length = 194
Score = 28.8 bits (63), Expect = 4.2
Identities = 23/140 (16%), Positives = 43/140 (30%), Gaps = 9/140 (6%)
Query: 413 LAEHKPLVLCGPPGSGKTMTLLSALRALPDMEVVS----LNFSSATTPELLLKTFDHYCE 468
L + K + + G PGSGK T + +S L ++ + +
Sbjct: 5 LKKSKIIFVVGGPGSGKG-TQCEKIVQKYGYTHLSTGDLLRAEVSSGSARGKMLSEIMEK 63
Query: 469 YRKTPNGVILSPIQLGKWLVLFCDEINLPDMDKYATQRV-ISFLRQLIEQRGFYRPADKQ 527
+ P +L ++ +V D +D Y + + I Q D
Sbjct: 64 GQLVPLETVLDMLR--DAMVAKVDTSKGFLIDGYPREVKQGEEFERKIGQPTLLLYVDAG 121
Query: 528 W-VSLERIQCVGACNPPTDP 546
+R+ G + D
Sbjct: 122 PETMTKRLLKRGETSGRVDD 141
>d2es4d1 a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB)
{Burkholderia glumae [TaxId: 337]}
Length = 280
Score = 29.2 bits (65), Expect = 4.3
Identities = 16/123 (13%), Positives = 36/123 (29%), Gaps = 9/123 (7%)
Query: 1016 REKCSELEEQQLHLNVGLGKIAETVEQVEEMQKSLAVKSQELQSKNEAANLKLKEMIKDQ 1075
S ++ L + + E Q++ Q+ +K + +
Sbjct: 148 DTTLSPEQKAAR-----LAALDAQLTPDERAQQAALHAQQDAVTKIADLQKAGATPDQMR 202
Query: 1076 QEAEKRKVQSQDIQAEIEKQTVEIAQKRVFVMEDLAQVEPAVMDAQQAVKEIKKQQLVEL 1135
+ + +A +Q E Q R E + AQ + + ++ +L
Sbjct: 203 AQIAQTLGPEAAARAAQMQQDDEAWQTR----YQAYAAERDRIAAQGLAPQDRDARIAQL 258
Query: 1136 RSM 1138
R
Sbjct: 259 RQQ 261
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal
recognition particle receptor FtsY {Thermus aquaticus
[TaxId: 271]}
Length = 207
Score = 28.9 bits (64), Expect = 4.3
Identities = 6/13 (46%), Positives = 11/13 (84%)
Query: 46 LMMVGPSGSGKST 58
+++VG +G GK+T
Sbjct: 9 VLVVGVNGVGKTT 21
Score = 28.2 bits (62), Expect = 6.6
Identities = 9/21 (42%), Positives = 11/21 (52%), Gaps = 2/21 (9%)
Query: 415 EHKPLV--LCGPPGSGKTMTL 433
E K V + G G GKT T+
Sbjct: 3 EPKGRVVLVVGVNGVGKTTTI 23
>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 180
Score = 28.8 bits (63), Expect = 4.3
Identities = 8/12 (66%), Positives = 10/12 (83%)
Query: 419 LVLCGPPGSGKT 430
+VL GPPG+GK
Sbjct: 5 MVLIGPPGAGKG 16
Score = 28.0 bits (61), Expect = 7.2
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 760 LLLIGVSGAGKTTLSRFVA 778
++LIG GAGK T + +
Sbjct: 5 MVLIGPPGAGKGTQAPNLQ 23
>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica
[TaxId: 28901]}
Length = 643
Score = 29.2 bits (65), Expect = 4.4
Identities = 11/61 (18%), Positives = 24/61 (39%), Gaps = 6/61 (9%)
Query: 392 ASDVVVPTLDTVRHESLLYTWLAEHKPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFS 451
A+ ++ + + + + +H+ +L P T + AL A D + + S
Sbjct: 321 ATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAP------TAIRALMAEGDKAIEGTDRS 374
Query: 452 S 452
S
Sbjct: 375 S 375
>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 258
Score = 28.8 bits (63), Expect = 4.5
Identities = 28/159 (17%), Positives = 48/159 (30%), Gaps = 17/159 (10%)
Query: 417 KPLVLCGPPGSGKTMTLLSALRALPDMEVVSLNFSSATTPELLLKTFDHYCEYRKTPNGV 476
+ ++L GPPG+GKT+ + F PE++ K +
Sbjct: 39 RGILLYGPPGTGKTLIARAVANETGAF------FFLINGPEIMSKLAGESESNLRKA--- 89
Query: 477 ILSPIQLGKWLVLFCDEINLPDMDKYATQRVISFLRQLIEQRGFYRPADKQWVSLERIQC 536
+ ++F DE +D A +R + +
Sbjct: 90 -FEEAEKNAPAIIFIDE-----LDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIV 143
Query: 537 VGACNPPTDPGRKPLSHRFLRHVPVIYVDYPGETSLKQI 575
+ A N P P RF R + + P T +I
Sbjct: 144 MAATNRPNSI--DPALRRFGRFDREVDIGIPDATGRLEI 180
>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4
[TaxId: 10331]}
Length = 333
Score = 29.2 bits (65), Expect = 4.6
Identities = 21/155 (13%), Positives = 38/155 (24%), Gaps = 21/155 (13%)
Query: 764 GVSGAGKTTLSRFVA----FMNGLSVFQ--IRAHNKYTGADFDEDLRTVLRRSGCKNEKI 817
GV G GK+T R +A + F + D + R N +
Sbjct: 13 GVYGIGKSTTGRVMASAASGGSPTLYFPEPMAYWRTLFETDVISGIYDTQNRKQQGNLAV 72
Query: 818 AFLLDESNVLESGFLERMNTL--------LANGEIPGLFEGDE-------YTTLMTQCKE 862
+ +S F L N G + +
Sbjct: 73 DDAALITAHYQSRFTTPYLILHDHTCTLFGGNSLQRGTQPDLTLVFDRHPVASTVCFPAA 132
Query: 863 GAQREGLMLDSNEELYKWFTQQVMKNLHVVFTMNP 897
+ + + + ++ VV T+N
Sbjct: 133 RYLLGDMSMCALMAMVATLPREPQGGNIVVTTLNV 167
>d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 138
Score = 27.9 bits (62), Expect = 4.6
Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 4/68 (5%)
Query: 1035 KIAETVEQVEE-MQKSLAVKSQELQSKNEAANLKL---KEMIKDQQEAEKRKVQSQDIQA 1090
+AE E E +QK++ + ++ E K+ KE + A ++Q +D A
Sbjct: 68 HLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQEKDKHA 127
Query: 1091 EIEKQTVE 1098
E ++ E
Sbjct: 128 EEVRKNKE 135
>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}
Length = 225
Score = 28.9 bits (63), Expect = 4.7
Identities = 30/212 (14%), Positives = 63/212 (29%), Gaps = 22/212 (10%)
Query: 50 GPSGSGKSTAWKVLLK----------ALERYEGVEGVAHIIDPK---AISKEALYGVLDP 96
GPSG+GK T K + + A+ R + + H +D A+ A + +
Sbjct: 10 GPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRF 69
Query: 97 NTREWTDGLFTHILRRIIDNVRGEISKRQWIIFDGDVDPEWVENLNSVLDDNKLLTLPNG 156
+ + + E++ + E + + L
Sbjct: 70 VSTNGNLEVILEGEDVSGEIRTQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGR 129
Query: 157 ERLSLPPNIRIMFEVQDLKYATLATVSRCG-----MIWFSEDVLSTEMIFENYLSRLRNI 211
+ ++ + D A E + E+ + R R +
Sbjct: 130 DMGTVVFPDAPVKIFLDASSEERAHRRMLQLQVKGFSVNFERL-LAEIKERDDRDRNRAV 188
Query: 212 ALDDIDDDSSLLITVDATGKAPDDVLSPALTL 243
A D+ + +D+T + + V+ AL
Sbjct: 189 APLVPAADA---LVLDSTTLSIEQVIEKALQY 217
>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-2 [TaxId: 9913]}
Length = 190
Score = 28.4 bits (62), Expect = 4.9
Identities = 31/212 (14%), Positives = 60/212 (28%), Gaps = 36/212 (16%)
Query: 46 LMMVGPSGSGKSTAWKVLLKALERYEGVEGVAHI----IDPKAISKEALYGVLDPNTRE- 100
+++GP G+GK T L K V H+ + ++ + G T +
Sbjct: 6 AVLLGPPGAGKGTQAPKLAKNF-------CVCHLATGDMLRAMVASGSELGKKLKATMDA 58
Query: 101 WTDGLFTHILRRIIDNVRGEISKRQWIIFDGDVDPEWVENLNSVLDDNKLLTLPNGERLS 160
+L I N+ K +++ E L+ +++ K E+L
Sbjct: 59 GKLVSDEMVLELIEKNLETPPCKNGFLLDGFPRTVRQAEMLDDLMEKRK-------EKLD 111
Query: 161 LPPNIRIMFEVQDLKYATLATVSRCGMIWFSEDVLSTEMIFENYLSRLRNIALDDIDDDS 220
I + R D + + L +
Sbjct: 112 SVIEFSIPDSLLI---------RRITGRLIHSDDNKKALKIRLEAYHTQTTPLVEYYSKR 162
Query: 221 SLLITVDATGKAPDDVLSPALTLQQDVASILS 252
+ +DA+ PD V + + S
Sbjct: 163 GIHSAIDASQ-TPDVV-------FASILAAFS 186
Score = 28.4 bits (62), Expect = 5.0
Identities = 8/12 (66%), Positives = 9/12 (75%)
Query: 419 LVLCGPPGSGKT 430
VL GPPG+GK
Sbjct: 6 AVLLGPPGAGKG 17
>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP)
carboxykinase (ATP-oxaloacetate carboxy-lyase)
{Trypanosoma cruzi [TaxId: 5693]}
Length = 323
Score = 28.8 bits (64), Expect = 5.3
Identities = 27/136 (19%), Positives = 44/136 (32%), Gaps = 40/136 (29%)
Query: 761 LLIGVSGAGKTTLSRFVAFMNGLSVFQIRAHNKYTGADFDEDLRTVLRRSGCKNEKIAFL 820
+ G+SG GKTTLS ++ D DE + T G N
Sbjct: 18 VFFGLSGTGKTTLS--------------ADPHRNLIGD-DEHVWT---DRGVFN------ 53
Query: 821 LDESNVLESGFLERMNTLLANGEIPGLFEGDEYTTLMTQCKEGAQREGLMLDSNEELYKW 880
+E G + L E + + GA E +LD +
Sbjct: 54 ------IEGGCYAKAIGLNPKTEK----------DIYDAVRFGAVAENCVLDKRTGEIDF 97
Query: 881 FTQQVMKNLHVVFTMN 896
+ + + KN V + ++
Sbjct: 98 YDESICKNTRVAYPLS 113
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 28.1 bits (61), Expect = 5.6
Identities = 9/20 (45%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Query: 759 HLLLIGVSGAGKTTL-SRFV 777
LL++G+ AGKTT+ +F
Sbjct: 4 RLLMLGLDNAGKTTILKKFN 23
>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS
kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Length = 208
Score = 28.2 bits (62), Expect = 5.9
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 5/36 (13%)
Query: 745 HVLRIDRIFRQPQ-GH----LLLIGVSGAGKTTLSR 775
H + R R + L G+S +GK+TL+
Sbjct: 7 HASALTRSERTELRNQRGLTIWLTGLSASGKSTLAV 42
>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-3 [TaxId: 9913]}
Length = 189
Score = 28.3 bits (62), Expect = 5.9
Identities = 6/12 (50%), Positives = 7/12 (58%)
Query: 419 LVLCGPPGSGKT 430
+ G PGSGK
Sbjct: 9 AAIMGAPGSGKG 20
>d1zbxb1 d.339.1.1 (B:485-613) Regulatory protein SIR1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 129
Score = 27.5 bits (61), Expect = 6.0
Identities = 6/38 (15%), Positives = 13/38 (34%)
Query: 704 LSKNYVPVGTTELREYVQARLKVFYEEELDVQLVLFDE 741
++ +P+ L ++ + K F L E
Sbjct: 58 KYQDPIPLKAKTLFKFCKQIKKKFLRGADFKLHTLPTE 95
>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast
(Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}
Length = 182
Score = 28.4 bits (62), Expect = 6.0
Identities = 9/26 (34%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Query: 749 IDRIF-RQPQGHLLLIGVSGAGKTTL 773
D+++ + +L++G+ GAGKTT+
Sbjct: 8 FDKLWGSNKELRILILGLDGAGKTTI 33
>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 28.1 bits (61), Expect = 6.2
Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Query: 754 RQPQGHLLLIGVSGAGKTTL-SRFV 777
+ Q L+L+G S GK++L RFV
Sbjct: 3 KICQFKLVLLGESAVGKSSLVLRFV 27
>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 182
Score = 28.0 bits (61), Expect = 6.4
Identities = 8/12 (66%), Positives = 9/12 (75%)
Query: 419 LVLCGPPGSGKT 430
LVL G PG+GK
Sbjct: 3 LVLMGLPGAGKG 14
Score = 28.0 bits (61), Expect = 6.8
Identities = 8/20 (40%), Positives = 14/20 (70%)
Query: 759 HLLLIGVSGAGKTTLSRFVA 778
+L+L+G+ GAGK T + +
Sbjct: 2 NLVLMGLPGAGKGTQAEKIV 21
>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium
extorquens [TaxId: 408]}
Length = 323
Score = 28.7 bits (63), Expect = 6.7
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 421 LCGPPGSGKTMTLLSALRALPDME 444
+ G PG GK+ T+ + L
Sbjct: 56 ITGVPGVGKSTTIDALGSLLTAAG 79
>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
globisporus [TaxId: 1459]}
Length = 182
Score = 27.9 bits (61), Expect = 7.0
Identities = 7/20 (35%), Positives = 14/20 (70%)
Query: 759 HLLLIGVSGAGKTTLSRFVA 778
+++L+G+ GAGK T + +
Sbjct: 2 NIVLMGLPGAGKGTQADRIV 21
Score = 27.9 bits (61), Expect = 7.0
Identities = 7/12 (58%), Positives = 9/12 (75%)
Query: 419 LVLCGPPGSGKT 430
+VL G PG+GK
Sbjct: 3 IVLMGLPGAGKG 14
>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain
{Adeno-associated virus 2, AAV2 [TaxId: 10804]}
Length = 267
Score = 28.4 bits (63), Expect = 7.1
Identities = 16/112 (14%), Positives = 34/112 (30%), Gaps = 20/112 (17%)
Query: 341 DFGNFLRSVTT-ITLPATSSDIVDFEVNIKNGEWVPWSNKVPQIEVETQKVAASDVVVPT 399
L + ++L T+ D + + +++ + + Q A
Sbjct: 39 QIKAALDNAGKIMSLTKTAPDYLVGQQPVEDISSNRIYKILELNGYDPQYAA-------- 90
Query: 400 LDTVRHESLLYTWLAEHKP----LVLCGPPGSGKTMTLLSALRALPDMEVVS 447
S+ W + + L GP +GKT + +P V+
Sbjct: 91 -------SVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTVPFYGCVN 135
>d2ex3b1 a.263.1.1 (B:71-259) DNA terminal protein {Bacteriophage
phi-29 [TaxId: 10756]}
Length = 189
Score = 28.1 bits (62), Expect = 7.5
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 1171 MRENFINSIVSNFNTEMITDEVREKMHS 1198
++ NFI S+ +FN+ DE+ E++
Sbjct: 112 LQLNFIKSVEGSFNSFDAADELIEELKK 139
>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 230
Score = 27.9 bits (62), Expect = 8.0
Identities = 9/13 (69%), Positives = 12/13 (92%)
Query: 46 LMMVGPSGSGKST 58
+ ++GPSGSGKST
Sbjct: 34 VSIMGPSGSGKST 46
>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 164
Score = 27.7 bits (60), Expect = 8.3
Identities = 4/19 (21%), Positives = 12/19 (63%), Gaps = 1/19 (5%)
Query: 760 LLLIGVSGAGKTTL-SRFV 777
++++G GK+++ R+
Sbjct: 5 MVVVGNGAVGKSSMIQRYC 23
>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 209
Score = 28.0 bits (61), Expect = 8.3
Identities = 26/197 (13%), Positives = 52/197 (26%), Gaps = 32/197 (16%)
Query: 50 GPSGSGKSTAWKVLLKALERYEGVEGVAHIIDPKAISKEALYGVLDPNTREWTDGLFTHI 109
G +GKST + L++AL G + R
Sbjct: 10 GVDRAGKSTQSRKLVEALCA----AGHRAEL-----------------LRFPERSTEIGK 48
Query: 110 LRRIIDNVRGEISKRQWIIFDGDVDPEWVENLNSVLDDNKLLTLPNGERLSLP-PNIRIM 168
L + ++ + E V + L L + + +
Sbjct: 49 LLSSYLQKKSDVEDHSVHLLFSANRWEQVPLIKEKLSQGVTLVVDRYAFSGVAFTGAKEN 108
Query: 169 FEVQDLKYATLATVSRCGMIWFS-------EDVLSTEMIFEN--YLSRLRNIALDDIDDD 219
F + K + +++ + +EN + R + D
Sbjct: 109 FSLDWCKQPDVGLPKPDLVLFLQLQLADAAKRGAFGHERYENGAFQERALRCFHQLMKDT 168
Query: 220 SSLLITVDATGKAPDDV 236
+ VDA+ K+ + V
Sbjct: 169 TLNWKMVDAS-KSIEAV 184
>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli
[TaxId: 562]}
Length = 210
Score = 28.0 bits (61), Expect = 8.3
Identities = 9/20 (45%), Positives = 15/20 (75%)
Query: 50 GPSGSGKSTAWKVLLKALER 69
G G+GK+TA V+++ LE+
Sbjct: 9 GLEGAGKTTARNVVVETLEQ 28
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARL1 [TaxId: 9606]}
Length = 169
Score = 27.8 bits (60), Expect = 8.7
Identities = 9/20 (45%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Query: 759 HLLLIGVSGAGKTTL-SRFV 777
+L++G+ GAGKTT+ R
Sbjct: 7 RILILGLDGAGKTTILYRLQ 26
>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 27.7 bits (60), Expect = 8.8
Identities = 7/19 (36%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
Query: 760 LLLIGVSGAGKTTL-SRFV 777
L+++G G GK+ L +F+
Sbjct: 9 LVVVGGGGVGKSALTIQFI 27
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 253
Score = 28.2 bits (61), Expect = 8.8
Identities = 14/81 (17%), Positives = 28/81 (34%), Gaps = 1/81 (1%)
Query: 730 EELDVQLVLFDEVLDH-VLRIDRIFRQPQGHLLLIGVSGAGKTTLSRFVAFMNGLSVFQI 788
+L L ++ + + +L G G GKTT + VA G + +
Sbjct: 24 MKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQ 83
Query: 789 RAHNKYTGADFDEDLRTVLRR 809
A + + + ++ L
Sbjct: 84 NASDVRSKTLLNAGVKNALDN 104
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo
sapiens), ARL8A [TaxId: 9606]}
Length = 164
Score = 27.7 bits (60), Expect = 8.9
Identities = 7/20 (35%), Positives = 11/20 (55%), Gaps = 1/20 (5%)
Query: 759 HLLLIGVSGAGKTTL-SRFV 777
L L+G+ +GKTT +
Sbjct: 4 ELTLVGLQYSGKTTFVNVIA 23
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 27.6 bits (60), Expect = 8.9
Identities = 9/20 (45%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Query: 759 HLLLIGVSGAGKTTL-SRFV 777
+LL+G+ AGKTTL +
Sbjct: 18 RILLLGLDNAGKTTLLKQLA 37
>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1
(Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 343
Score = 28.0 bits (62), Expect = 9.2
Identities = 12/62 (19%), Positives = 26/62 (41%)
Query: 1241 LRLELKSLEVQASENKAKGEETKDLITQLEKSIASYKDEYAQLIAQATAIKTDLDNVQAK 1300
+R EL L + + + E +D+ QL +++ L + I+ ++D+
Sbjct: 193 IRSELMRLGLHQVLQELREIENEDMKVQLCVFDEQGDEDFFDLKGRLDDIRMEMDDFGEV 252
Query: 1301 FY 1302
F
Sbjct: 253 FQ 254
>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP)
carboxykinase (ATP-oxaloacetate carboxy-lyase)
{Escherichia coli [TaxId: 562]}
Length = 313
Score = 28.1 bits (62), Expect = 9.4
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 761 LLIGVSGAGKTTLS 774
+ G+SG GKTTLS
Sbjct: 18 VFFGLSGTGKTTLS 31
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId:
9606]}
Length = 174
Score = 27.6 bits (60), Expect = 9.5
Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 6/29 (20%)
Query: 750 DRIFRQPQGHLLLIGVSGAGKTTL-SRFV 777
D +F+ L+IG +G GK+ L +F+
Sbjct: 3 DFLFK-----FLVIGNAGTGKSCLLHQFI 26
>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin
(Saguinus oedipus) [TaxId: 9490]}
Length = 168
Score = 27.6 bits (60), Expect = 9.6
Identities = 6/19 (31%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
Query: 760 LLLIGVSGAGKTTL-SRFV 777
++++G G GK+ L +F+
Sbjct: 7 VIMVGSGGVGKSALTLQFM 25
>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 27.6 bits (60), Expect = 10.0
Identities = 7/19 (36%), Positives = 12/19 (63%), Gaps = 1/19 (5%)
Query: 760 LLLIGVSGAGKTT-LSRFV 777
LLL+G +GK+T + +
Sbjct: 5 LLLLGTGESGKSTFIKQMR 23
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.134 0.393
Gapped
Lambda K H
0.267 0.0443 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 6,012,872
Number of extensions: 294182
Number of successful extensions: 1551
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1547
Number of HSP's successfully gapped: 340
Length of query: 1614
Length of database: 2,407,596
Length adjustment: 98
Effective length of query: 1516
Effective length of database: 1,062,056
Effective search space: 1610076896
Effective search space used: 1610076896
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.2 bits)