BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5680
(201 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2J23|A Chain A, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
pdb|2J23|B Chain B, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
Length = 121
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 59/104 (56%), Gaps = 4/104 (3%)
Query: 60 IIEKIDDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG--VEFVKINVENGG 117
+I D FKQ G V+ F+ CG CK + P +S+T +G V F K++V+
Sbjct: 19 VISSYDQFKQVTGGDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVDE-Q 77
Query: 118 GEIAREFEVQAVPTVIGFRNGDPVDMVVGNADQDVIQTLVSKLS 161
+IA+E ++A+PT + F+NG +D VVG AD +Q +++ S
Sbjct: 78 SQIAQEVGIRAMPTFVFFKNGQKIDTVVG-ADPSKLQAAITQHS 120
>pdb|1UVZ|A Chain A, Structure Of Human Thioredoxin 2
pdb|1UVZ|B Chain B, Structure Of Human Thioredoxin 2
pdb|1UVZ|C Chain C, Structure Of Human Thioredoxin 2
pdb|1UVZ|D Chain D, Structure Of Human Thioredoxin 2
pdb|1UVZ|E Chain E, Structure Of Human Thioredoxin 2
pdb|1UVZ|F Chain F, Structure Of Human Thioredoxin 2
pdb|1W4V|A Chain A, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|B Chain B, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|C Chain C, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|D Chain D, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|E Chain E, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|F Chain F, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W89|A Chain A, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|B Chain B, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|C Chain C, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|D Chain D, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|E Chain E, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|F Chain F, Structure Of The Reduced Form Of Human Thioredoxin 2
Length = 119
Score = 60.1 bits (144), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 56/97 (57%), Gaps = 3/97 (3%)
Query: 66 DFK-QTIRGRNPVLAYFFKPSCGFCKQLEPKIST-VSETTSGVEFVKINVENGGGEIARE 123
DF+ + + PV+ F CG CK L P++ V++ V K+++++ ++A E
Sbjct: 22 DFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHT-DLAIE 80
Query: 124 FEVQAVPTVIGFRNGDPVDMVVGNADQDVIQTLVSKL 160
+EV AVPTV+ +NGD VD VG D+D ++ + KL
Sbjct: 81 YEVSAVPTVLAMKNGDVVDKFVGIKDEDQLEAFLKKL 117
>pdb|1NW2|A Chain A, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|B Chain B, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|C Chain C, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|D Chain D, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|E Chain E, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|F Chain F, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|G Chain G, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|H Chain H, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
Length = 105
Score = 57.4 bits (137), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 54/98 (55%), Gaps = 2/98 (2%)
Query: 66 DFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSET-TSGVEFVKINVENGGGEIAREF 124
+F+Q I+G PVL F+ CG C+ + P + +E V K+NV+ E +F
Sbjct: 9 NFQQAIQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDE-NPETTSQF 67
Query: 125 EVQAVPTVIGFRNGDPVDMVVGNADQDVIQTLVSKLSQ 162
+ ++PT+I F+ G+PV ++G ++ ++ ++ + Q
Sbjct: 68 GIMSIPTLILFKGGEPVKQLIGYQPKEQLEAQLADVLQ 105
>pdb|1RQM|A Chain A, Solution Structure Of The K18gR82E ALICYCLOBACILLUS
Acidocaldarius Thioredoxin Mutant
Length = 105
Score = 57.4 bits (137), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 54/98 (55%), Gaps = 2/98 (2%)
Query: 66 DFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSET-TSGVEFVKINVENGGGEIAREF 124
+F+Q I+G PVL F+ CG C+ + P + +E V K+NV+ E +F
Sbjct: 9 NFQQAIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDE-NPETTSQF 67
Query: 125 EVQAVPTVIGFRNGDPVDMVVGNADQDVIQTLVSKLSQ 162
+ ++PT+I F+ G+PV ++G ++ ++ ++ + Q
Sbjct: 68 GIMSIPTLILFKGGEPVKQLIGYQPKEQLEAQLADVLQ 105
>pdb|1QUW|A Chain A, Solution Structure Of The Thioredoxin From Bacillus
Acidocaldarius
Length = 105
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 53/98 (54%), Gaps = 2/98 (2%)
Query: 66 DFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSET-TSGVEFVKINVENGGGEIAREF 124
+F+Q I+G PVL F+ CG C+ + P + +E V K+NV+ E +F
Sbjct: 9 NFQQAIQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDE-NPETTSQF 67
Query: 125 EVQAVPTVIGFRNGDPVDMVVGNADQDVIQTLVSKLSQ 162
+ ++PT+I F+ G PV ++G ++ ++ ++ + Q
Sbjct: 68 GIMSIPTLILFKGGRPVKQLIGYQPKEQLEAQLADVLQ 105
>pdb|1NSW|A Chain A, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|B Chain B, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|C Chain C, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|D Chain D, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
Length = 105
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 53/98 (54%), Gaps = 2/98 (2%)
Query: 66 DFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSET-TSGVEFVKINVENGGGEIAREF 124
+F+Q I+G PVL F+ CG C+ + P + +E V K+NV+ E +F
Sbjct: 9 NFQQAIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDE-NPETTSQF 67
Query: 125 EVQAVPTVIGFRNGDPVDMVVGNADQDVIQTLVSKLSQ 162
+ ++PT+I F+ G PV ++G ++ ++ ++ + Q
Sbjct: 68 GIMSIPTLILFKGGRPVKQLIGYQPKEQLEAQLADVLQ 105
>pdb|1V98|A Chain A, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
pdb|1V98|B Chain B, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
Length = 140
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 55/100 (55%), Gaps = 2/100 (2%)
Query: 56 MAYLIIEKIDDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVE 114
+ +++ F Q + G L FF P CG C+ + P + ++ +G ++ VK+NV+
Sbjct: 32 LPWVVEADEKGFAQEVAGAPLTLVDFFAPWCGPCRLVSPILEELARDHAGRLKVVKVNVD 91
Query: 115 NGGGEIAREFEVQAVPTVIGFRNGDPVDMVVGNADQDVIQ 154
G AR + V++VPT++ FR G PV VG + + V++
Sbjct: 92 EHPGLAAR-YGVRSVPTLVLFRRGAPVATWVGASPRRVLE 130
>pdb|2I9H|A Chain A, Nmr Solution Structure Of The Reduced Form Of Thioredoxin
1 From Yeast (Trx1)
Length = 103
Score = 53.1 bits (126), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 66 DFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFE 125
+F I V+ F+ CG CK + P I SE +F K++V+ G ++A++ E
Sbjct: 10 EFDSAIAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQADFYKLDVDELG-DVAQKNE 68
Query: 126 VQAVPTVIGFRNGDPVDMVVG 146
V A+PT++ F+NG V VVG
Sbjct: 69 VSAMPTLLLFKNGKEVAKVVG 89
>pdb|3F3Q|A Chain A, Crystal Structure Of The Oxidised Form Of Thioredoxin 1
From Saccharomyces Cerevisiae
Length = 109
Score = 53.1 bits (126), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 66 DFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFE 125
+F I V+ F+ CG CK + P I SE +F K++V+ G ++A++ E
Sbjct: 16 EFDSAIAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQADFYKLDVDELG-DVAQKNE 74
Query: 126 VQAVPTVIGFRNGDPVDMVVG 146
V A+PT++ F+NG V VVG
Sbjct: 75 VSAMPTLLLFKNGKEVAKVVG 95
>pdb|1GL8|A Chain A, Solution Structure Of Thioredoxin M From Spinach, Oxidized
Form
Length = 104
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
Query: 76 PVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENGGGEIAREFEVQAVPTVIG 134
PV+ F+ P CG CK + P I +++ SG + K+N + G IA ++ ++++PTV+
Sbjct: 19 PVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPG-IATQYNIRSIPTVLF 77
Query: 135 FRNGDPVDMVVGNADQDVIQTLVSK 159
F+NG+ + ++G + + + K
Sbjct: 78 FKNGERKESIIGAVPKSTLTDSIEK 102
>pdb|1FB0|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB0|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB6|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
pdb|1FB6|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
Length = 105
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
Query: 76 PVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENGGGEIAREFEVQAVPTVIG 134
PV+ F+ P CG CK + P I +++ SG + K+N + G IA ++ ++++PTV+
Sbjct: 20 PVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPG-IATQYNIRSIPTVLF 78
Query: 135 FRNGDPVDMVVGNADQDVIQTLVSK 159
F+NG+ + ++G + + + K
Sbjct: 79 FKNGERKESIIGAVPKSTLTDSIEK 103
>pdb|2YJ7|A Chain A, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
pdb|2YJ7|B Chain B, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
Length = 106
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 55/102 (53%), Gaps = 2/102 (1%)
Query: 60 IIEKIDD-FKQTI-RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGG 117
+IE D+ F+Q + + PVL F+ P CG C+ + P I +++ G V +
Sbjct: 3 VIEVTDENFEQEVLKSDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEGKVKVVKVNVDEN 62
Query: 118 GEIAREFEVQAVPTVIGFRNGDPVDMVVGNADQDVIQTLVSK 159
A ++ ++++PT++ F+NG VD +VG ++ ++ + K
Sbjct: 63 PNTAAQYGIRSIPTLLLFKNGQVVDRLVGAQPKEALKERIDK 104
>pdb|2L4Q|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C
From M. Tb
pdb|2L59|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C
From M. Tb
Length = 116
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 71 IRGRNPVLAYFFKPSCGFCKQLEPKISTVS-ETTSGVEFVKINVENGGGEIAREFEVQAV 129
+ PVL F+ CG CK + P + ++ E + + K++V+ E AR F+V ++
Sbjct: 22 LSSNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNP-ETARNFQVVSI 80
Query: 130 PTVIGFRNGDPVDMVVG 146
PT+I F++G PV +VG
Sbjct: 81 PTLILFKDGQPVKRIVG 97
>pdb|2I1U|A Chain A, Mycobacterium Tuberculosis Thioredoxin C
Length = 121
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 71 IRGRNPVLAYFFKPSCGFCKQLEPKISTVS-ETTSGVEFVKINVENGGGEIAREFEVQAV 129
+ PVL F+ CG CK + P + ++ E + + K++V+ E AR F+V ++
Sbjct: 27 LSSNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNP-ETARNFQVVSI 85
Query: 130 PTVIGFRNGDPVDMVVG 146
PT+I F++G PV +VG
Sbjct: 86 PTLILFKDGQPVKRIVG 102
>pdb|3ZZX|A Chain A, Crystallographic Structure Of Thioredoxin From Litopenaeus
Vannamei
pdb|3ZZX|B Chain B, Crystallographic Structure Of Thioredoxin From Litopenaeus
Vannamei
Length = 105
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 59/105 (56%), Gaps = 3/105 (2%)
Query: 56 MAYLIIEKIDDFKQTIRGRNP-VLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVE 114
M Y + ++ D KQ N V+ F+ CG CK + PK+ +S++ S V F+K++V+
Sbjct: 1 MVYQVKDQEDFTKQLNEAGNKLVVIDFYATWCGPCKMIAPKLEELSQSMSDVVFLKVDVD 60
Query: 115 NGGGEIAREFEVQAVPTVIGFRNGDPVDMVVGNADQDVIQTLVSK 159
+IA++ ++ +PT + +NG +D + G A+ D + LV K
Sbjct: 61 E-CEDIAQDNQIACMPTFLFMKNGQKLDSLSG-ANYDKLLELVEK 103
>pdb|3TCO|A Chain A, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
pdb|3TCO|B Chain B, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
pdb|3TCO|C Chain C, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
Length = 109
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 2/96 (2%)
Query: 65 DDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENGGGEIARE 123
++F + IR VL + C C EP V+E G F ++NV+ +IA +
Sbjct: 12 ENFDEVIRNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKGKAVFGRLNVDENQ-KIADK 70
Query: 124 FEVQAVPTVIGFRNGDPVDMVVGNADQDVIQTLVSK 159
+ V +PT + F NG VD +VG D+D +++ V+K
Sbjct: 71 YSVLNIPTTLIFVNGQLVDSLVGAVDEDTLESTVNK 106
>pdb|3QDN|A Chain A, Putative Thioredoxin Protein From Salmonella Typhimurium
pdb|3QDN|B Chain B, Putative Thioredoxin Protein From Salmonella Typhimurium
Length = 287
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 76 PVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVE-NGGGEIAREFEVQAVPTVIG 134
PVL YF+ C QL P + +++ G +F+ ++ + IA +F ++A+PTV
Sbjct: 28 PVLFYFWSERSQHCLQLTPVLESLAAQYHG-QFILAKLDCDAEQXIAAQFGLRAIPTVYL 86
Query: 135 FRNGDPVDMVVGNADQDVIQTLVSK 159
F+NG PVD G ++ I+ L+ K
Sbjct: 87 FQNGQPVDGFQGPQPEEAIRALLDK 111
>pdb|2GZY|A Chain A, Solution Structures Of The Reduced Form Of Thioredoxin
From Bacillus Subtilis
pdb|2GZZ|A Chain A, Solution Structures Of The Oxidized Form Of Thioredoxin
From Bacillus Subtilis
Length = 104
Score = 50.1 bits (118), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 50/84 (59%), Gaps = 2/84 (2%)
Query: 77 VLAYFFKPSCGFCKQLEPKISTVS-ETTSGVEFVKINVENGGGEIAREFEVQAVPTVIGF 135
VLA F+ P CG CK + P + + E ++ VKI+V+ E A ++ V ++PT++
Sbjct: 20 VLADFWAPWCGPCKMIAPVLEELDQEMGDKLKIVKIDVDE-NQETAGKYGVMSIPTLLVL 78
Query: 136 RNGDPVDMVVGNADQDVIQTLVSK 159
++G+ V+ VG ++ +Q LV+K
Sbjct: 79 KDGEVVETSVGFKPKEALQELVNK 102
>pdb|3DIE|A Chain A, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a
Mutant
pdb|3DIE|B Chain B, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a
Mutant
Length = 106
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Query: 78 LAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENGGGEIAREFEVQAVPTVIGFR 136
L F+ +CG CK + P + ++ G + +K++V+ A+ +EV ++PT+I F+
Sbjct: 23 LVDFWATACGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAK-YEVMSIPTLIVFK 81
Query: 137 NGDPVDMVVG 146
+G PVD VVG
Sbjct: 82 DGQPVDKVVG 91
>pdb|3QOU|A Chain A, Crystal Structure Of E. Coli Ybbn
Length = 287
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
Query: 76 PVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGE-IAREFEVQAVPTVIG 134
PVL YF+ C QL P + +++ +G +F+ ++ + IA +F ++A+PTV
Sbjct: 28 PVLFYFWSERSQHCLQLTPILESLAAQYNG-QFILAKLDCDAEQMIAAQFGLRAIPTVYL 86
Query: 135 FRNGDPVDMVVGNADQDVIQTLV 157
F+NG PVD G ++ I+ L+
Sbjct: 87 FQNGQPVDGFQGPQPEEAIRALL 109
>pdb|2FA4|A Chain A, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
pdb|2FA4|B Chain B, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
Length = 111
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 73 GRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTV 132
G V+ FF CG CK + P I +E S F K++V+ ++A++ EV ++PT+
Sbjct: 25 GDKLVVVDFFATWCGPCKMIAPMIEKFAEQYSDAAFYKLDVDE-VSDVAQKAEVSSMPTL 83
Query: 133 IGFRNGDPVDMVVGNADQDVIQTLVSKL 160
I ++ G V VVG + Q + S +
Sbjct: 84 IFYKGGKEVTRVVGANPAAIKQAIASNV 111
>pdb|2OE0|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae
pdb|2OE0|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae
pdb|2OE1|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Reduced Form)
pdb|2OE1|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Reduced Form)
pdb|2OE3|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Oxidized Form)
pdb|2OE3|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Oxidized Form)
Length = 114
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 66 DFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFE 125
+F+ I+ + ++ F+ CG CK ++P ++ + + V FVK +V+ +IA+E E
Sbjct: 22 EFRNLIKQNDKLVIDFYATWCGPCKMMQPHLTKLIQAYPDVRFVKCDVDE-SPDIAKECE 80
Query: 126 VQAVPTVIGFRNGDPVDMVVG 146
V A+PT + ++G + ++G
Sbjct: 81 VTAMPTFVLGKDGQLIGKIIG 101
>pdb|1T00|A Chain A, The Structure Of Thioredoxin From S. Coelicolor
Length = 112
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 47/84 (55%), Gaps = 3/84 (3%)
Query: 65 DDFKQTI-RGRNPVLAYFFKPSCGFCKQLEPKISTV-SETTSGVEFVKINVENGGGEIAR 122
D F+Q + + PVL F+ CG C+Q+ P + + +E +E VK+N++ G A+
Sbjct: 13 DSFEQDVLKNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDKIEIVKLNIDENPGTAAK 72
Query: 123 EFEVQAVPTVIGFRNGDPVDMVVG 146
+ V ++PT+ ++ G+ +VG
Sbjct: 73 -YGVMSIPTLNVYQGGEVAKTIVG 95
>pdb|2HSY|A Chain A, Solution Structure Of Thioredoxin 2 From Saccharomyces
Cerevisiae
Length = 104
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 73 GRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTV 132
G V+ FF CG CK + P I +E S F K++V+ ++A++ EV ++PT+
Sbjct: 18 GDKLVVVDFFATWCGPCKMIAPMIEKFAEQYSDAAFYKLDVDE-VSDVAQKAEVSSMPTL 76
Query: 133 IGFRNGDPVDMVVGNADQDVIQTLVSKL 160
I ++ G V VVG + Q + S +
Sbjct: 77 IFYKGGKEVTRVVGANPAAIKQAIASNV 104
>pdb|3F3R|A Chain A, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed
Disulfide Complex
pdb|3F3R|B Chain B, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed
Disulfide Complex
Length = 109
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 66 DFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFE 125
+F I V+ F+ CG K + P I SE +F K++V+ G ++A++ E
Sbjct: 16 EFDSAIAQDKLVVVDFYATWCGPSKMIAPMIEKFSEQYPQADFYKLDVDELG-DVAQKNE 74
Query: 126 VQAVPTVIGFRNGDPVDMVVG 146
V A+PT++ F+NG V VVG
Sbjct: 75 VSAMPTLLLFKNGKEVAKVVG 95
>pdb|1MEK|A Chain A, Human Protein Disulfide Isomerase, Nmr, 40 Structures
Length = 120
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 52/109 (47%), Gaps = 8/109 (7%)
Query: 58 YLIIEKIDDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVS----ETTSGVEFVKINV 113
++++ + +F + + +L F+ P CG CK L P+ + + S + K++
Sbjct: 8 HVLVLRKSNFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDA 67
Query: 114 ENGGGEIAREFEVQAVPTVIGFRNGD---PVDMVVGNADQDVIQTLVSK 159
++A+++ V+ PT+ FRNGD P + G D++ L +
Sbjct: 68 TE-ESDLAQQYGVRGYPTIKFFRNGDTASPKEYTAGREADDIVNWLKKR 115
>pdb|2XBI|A Chain A, Crystal Structure Of Schistosoma Mansoni Thioredoxin At
1.6 Angstrom
Length = 108
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Query: 77 VLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTVIGFR 136
V+ FF CG CK + P +SE + FVK++V+ E AR++ + A+PT I +
Sbjct: 27 VVVDFFATWCGPCKTIAPLFKELSEKYDAI-FVKVDVDKLE-ETARKYNISAMPTFIAIK 84
Query: 137 NGDPVDMVVG 146
NG+ V VVG
Sbjct: 85 NGEKVGDVVG 94
>pdb|2O85|A Chain A, S. Aureus Thioredoxin P31t Mutant
Length = 107
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 78 LAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENGGGEIAREFEVQAVPTVIGFR 136
L F+ CG CK + P + ++ G + +K++V+ A+ +EV ++PT+I F+
Sbjct: 24 LVDFWATWCGTCKMIAPVLEELAADYEGKADILKLDVDENPSTAAK-YEVMSIPTLIVFK 82
Query: 137 NGDPVDMVVG 146
+G PVD VVG
Sbjct: 83 DGQPVDKVVG 92
>pdb|2O87|A Chain A, S. Aureus Thioredoxin P31s Mutant
Length = 106
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 78 LAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENGGGEIAREFEVQAVPTVIGFR 136
L F+ CG CK + P + ++ G + +K++V+ A+ +EV ++PT+I F+
Sbjct: 23 LVDFWATWCGSCKMIAPVLEELAADYEGKADILKLDVDENPSTAAK-YEVMSIPTLIVFK 81
Query: 137 NGDPVDMVVG 146
+G PVD VVG
Sbjct: 82 DGQPVDKVVG 91
>pdb|2PUK|C Chain C, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
pdb|2PUK|G Chain G, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
Length = 106
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
Query: 76 PVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENGGGEIAREFEVQAVPTVIG 134
PV+ F+ P CG K + P I +++ SG + K+N + G IA ++ ++++PTV+
Sbjct: 20 PVMVDFWAPWCGPSKLIAPVIDELAKEYSGKIAVYKLNTDEAPG-IATQYNIRSIPTVLF 78
Query: 135 FRNGDPVDMVVGNADQDVIQTLVSK 159
F+NG+ + ++G + + + K
Sbjct: 79 FKNGERKESIIGAVPKSTLTDSIEK 103
>pdb|2XBQ|A Chain A, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XBQ|B Chain B, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XC2|A Chain A, Crystal Structure Of Oxidized Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.6 Angstrom
Length = 117
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Query: 77 VLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTVIGFR 136
V+ FF CG CK + P +SE + FVK++V+ E AR++ + A+PT I +
Sbjct: 36 VVVDFFATWCGPCKTIAPLFKELSEKYDAI-FVKVDVDKLE-ETARKYNISAMPTFIAIK 93
Query: 137 NGDPVDMVVG 146
NG+ V VVG
Sbjct: 94 NGEKVGDVVG 103
>pdb|1TI3|A Chain A, Solution Structure Of The Thioredoxin H1 From Poplar, A
Cppc Active Site Variant
Length = 113
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 56/100 (56%), Gaps = 6/100 (6%)
Query: 64 IDDFKQTI---RGRNPVLAYFFKPS-CGFCKQLEPKISTVSETTSGVEFVKINVENGGGE 119
+D +K+ +G ++ F S C CK + P + +++ V F+K++V+
Sbjct: 12 VDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFPNVTFLKVDVDELKA- 70
Query: 120 IAREFEVQAVPTVIGFRNGDPVDMVVGNADQDVIQTLVSK 159
+A E+ V+A+PT I ++G VD VG AD+D + TLV+K
Sbjct: 71 VAEEWNVEAMPTFIFLKDGKLVDKTVG-ADKDGLPTLVAK 109
>pdb|2E0Q|A Chain A, Crystal Structure Of K53e Thioredoxin From Sulfolobus
Tokodaii Strain7
Length = 104
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 81 FFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTVIGFRNGDP 140
F+ C C L P I ++E V F K+N + +IA + V ++PTVI F++G+P
Sbjct: 23 FWAEWCAPCLILAPIIEELAEDYPQVGFGKLNSDENP-DIAARYGVMSLPTVIFFKDGEP 81
Query: 141 VDMVVGNADQDVIQTLVSKL 160
VD ++G ++ I+ + L
Sbjct: 82 VDEIIGAVPREEIEIRIKNL 101
>pdb|2O7K|A Chain A, S. Aureus Thioredoxin
Length = 107
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 78 LAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENGGGEIAREFEVQAVPTVIGFR 136
L F+ CG CK + P + ++ G + +K++V+ A+ +EV ++PT+I F+
Sbjct: 24 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAK-YEVMSIPTLIVFK 82
Query: 137 NGDPVDMVVG 146
+G PVD VVG
Sbjct: 83 DGQPVDKVVG 92
>pdb|3NOF|A Chain A, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant
pdb|3NOF|B Chain B, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant
pdb|3O6T|A Chain A, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|B Chain B, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|C Chain C, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|D Chain D, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
Length = 118
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Query: 71 IRGRNPVLAYFFKPSCGFCKQLEPKISTVS-ETTSGVEFVKINVENGGGEIAREFEVQAV 129
+ PVL F+ CG K + P + ++ E + + K++V+ E AR F+V ++
Sbjct: 24 LSSNKPVLVDFWATWCGPSKMVAPVLEEIATERATDLTVAKLDVDTNP-ETARNFQVVSI 82
Query: 130 PTVIGFRNGDPVDMVVG 146
PT+I F++G PV +VG
Sbjct: 83 PTLILFKDGQPVKRIVG 99
>pdb|3P2A|A Chain A, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|B Chain B, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|C Chain C, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|D Chain D, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
Length = 148
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 76 PVLAYFFKPSCGFCKQLEPKIS-TVSETTSGVEFVKINVENGGGEIAREFEVQAVPTVIG 134
P + F+ P CG C+ P + T +E V FVK+N E ++ F ++++PT+
Sbjct: 57 PXVIDFWAPWCGPCRSFAPIFAETAAERAGKVRFVKVNTE-AEPALSTRFRIRSIPTIXL 115
Query: 135 FRNGDPVDMVVG 146
+RNG +D + G
Sbjct: 116 YRNGKXIDXLNG 127
>pdb|2VIM|A Chain A, X-Ray Structure Of Fasciola Hepatica Thioredoxin
Length = 104
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 81 FFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTVIGFRNGDP 140
FF CG C+ + PK+ +++ VEF K++V+ E A ++ V A+PT + ++G
Sbjct: 26 FFAQWCGPCRNIAPKVEALAKEIPEVEFAKVDVDQ-NEEAAAKYSVTAMPTFVFIKDGKE 84
Query: 141 VDMVVGNADQDVIQTL 156
VD G + + +T+
Sbjct: 85 VDRFSGANETKLRETI 100
>pdb|1SYR|A Chain A, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|B Chain B, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|C Chain C, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|D Chain D, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|E Chain E, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|F Chain F, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|G Chain G, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|H Chain H, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|I Chain I, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|J Chain J, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|K Chain K, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|L Chain L, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
Length = 112
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 51/96 (53%), Gaps = 2/96 (2%)
Query: 66 DFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFE 125
+F I V+ FF CG CK++ P S+T + + F+K++V+ E+ +
Sbjct: 18 EFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDVDE-VSEVTEKEN 76
Query: 126 VQAVPTVIGFRNGDPVDMVVGNADQDVIQTLVSKLS 161
+ ++PT ++NG VD ++G A+ ++ L+ K +
Sbjct: 77 ITSMPTFKVYKNGSSVDTLLG-ANDSALKQLIEKYA 111
>pdb|1DBY|A Chain A, Nmr Structures Of Chloroplast Thioredoxin M Ch2 From The
Green Alga Chlamydomonas Reinhardtii
Length = 107
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 50/97 (51%), Gaps = 3/97 (3%)
Query: 65 DDFKQTI-RGRNPVLAYFFKPSCGFCKQLEPKISTVS-ETTSGVEFVKINVENGGGEIAR 122
D FK + PVL F+ P CG C+ + P + ++ E ++ VK+N + +A
Sbjct: 9 DTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPN-VAS 67
Query: 123 EFEVQAVPTVIGFRNGDPVDMVVGNADQDVIQTLVSK 159
E+ ++++PT++ F+ G + ++G + I V K
Sbjct: 68 EYGIRSIPTIMVFKGGKKCETIIGAVPKATIVQTVEK 104
>pdb|2IPA|A Chain A, Solution Structure Of Trx-Arsc Complex
Length = 104
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 77 VLAYFFKPSCGFCKQLEPKISTVS-ETTSGVEFVKINVENGGGEIAREFEVQAVPTVIGF 135
VLA F+ P CG K + P + + E ++ VKI+V+ E A ++ V ++PT++
Sbjct: 20 VLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKIDVDE-NQETAGKYGVMSIPTLLVL 78
Query: 136 RNGDPVDMVVGNADQDVIQTLVSK 159
++G+ V+ VG ++ +Q LV+K
Sbjct: 79 KDGEVVETSVGFKPKEALQELVNK 102
>pdb|2CVK|A Chain A, Crystal Structure Of Thermus Thermophilus Thioredoxin
Length = 110
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 54/96 (56%), Gaps = 4/96 (4%)
Query: 66 DFKQTIRGRNP-VLAYFFKPSCGFCKQLEPKISTVSETTSGVEFV-KINVENGGGEIARE 123
+F +T+ G++P VL F+ C C+ + P + +++ G V K++V+ + A
Sbjct: 11 NFDETL-GQHPLVLVDFWAEWCAPCRXIAPILEEIAKEYEGKLLVAKLDVDENP-KTAXR 68
Query: 124 FEVQAVPTVIGFRNGDPVDMVVGNADQDVIQTLVSK 159
+ V ++PTVI F++G PV+++VG + Q + K
Sbjct: 69 YRVXSIPTVILFKDGQPVEVLVGAQPKRNYQAKIEK 104
>pdb|2YZU|A Chain A, Crystal Structure Of Oxidized Thioredoxin From Thermus
Thermophilus Hb8
Length = 109
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 54/96 (56%), Gaps = 4/96 (4%)
Query: 66 DFKQTIRGRNP-VLAYFFKPSCGFCKQLEPKISTVSETTSGVEFV-KINVENGGGEIARE 123
+F +T+ G++P VL F+ C C+ + P + +++ G V K++V+ + A
Sbjct: 10 NFDETL-GQHPLVLVDFWAEWCAPCRXIAPILEEIAKEYEGKLLVAKLDVDENP-KTAXR 67
Query: 124 FEVQAVPTVIGFRNGDPVDMVVGNADQDVIQTLVSK 159
+ V ++PTVI F++G PV+++VG + Q + K
Sbjct: 68 YRVXSIPTVILFKDGQPVEVLVGAQPKRNYQAKIEK 103
>pdb|3D21|A Chain A, Crystal Structure Of A Poplar Wild-Type Thioredoxin H,
Pttrxh4
pdb|3D21|B Chain B, Crystal Structure Of A Poplar Wild-Type Thioredoxin H,
Pttrxh4
Length = 139
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 77 VLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTVIGFR 136
VLA F CG CKQ+ P +SE + F+ I+V+ + + +E++A PT R
Sbjct: 49 VLANFSARWCGPCKQIAPYYIELSENYPSLMFLVIDVDE-LSDFSASWEIKATPTFFFLR 107
Query: 137 NGDPVDMVVG 146
+G VD +VG
Sbjct: 108 DGQQVDKLVG 117
>pdb|3HHV|A Chain A, The Crystal Structure Of The Thioredoxin A2 From
Sulfolobus Solfataricus
Length = 110
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 48/95 (50%), Gaps = 1/95 (1%)
Query: 66 DFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFE 125
+F + I V+ F+ C C L P I ++ V F K+N E +IA +
Sbjct: 15 NFDEFITKNKIVVVDFWAEWCAPCLILAPVIEELANDYPQVAFGKLNTEESQ-DIAMRYG 73
Query: 126 VQAVPTVIGFRNGDPVDMVVGNADQDVIQTLVSKL 160
+ ++PT++ F+NG+ VD ++G ++ I+ + L
Sbjct: 74 IMSLPTIMFFKNGELVDQILGAVPREEIEVRLKSL 108
>pdb|2VOC|A Chain A, Thioredoxin A Active Site Mutants Form Mixed Disulfide
Dimers That Resemble Enzyme-substrate Reaction
Intermediate
pdb|2VOC|B Chain B, Thioredoxin A Active Site Mutants Form Mixed Disulfide
Dimers That Resemble Enzyme-substrate Reaction
Intermediate
Length = 112
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 77 VLAYFFKPSCGFCKQLEPKISTVS-ETTSGVEFVKINVENGGGEIAREFEVQAVPTVIGF 135
VLA F+ P CG K + P + + E ++ VKI+V+ E A ++ V ++PT++
Sbjct: 20 VLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKIDVDE-NQETAGKYGVMSIPTLLVL 78
Query: 136 RNGDPVDMVVGNADQDVIQTLVSK 159
++G+ V+ VG ++ +Q LV+K
Sbjct: 79 KDGEVVETSVGFKPKEALQELVNK 102
>pdb|3IDV|A Chain A, Crystal Structure Of The A0a Fragment Of Erp72
Length = 241
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 42/82 (51%), Gaps = 5/82 (6%)
Query: 65 DDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKIST----VSETTSGVEFVKINVENGGGEI 120
++F + + + +L F+ P CG CK+L P+ +S+ + + K++ ++
Sbjct: 138 ENFDEVVNDADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDA-TAETDL 196
Query: 121 AREFEVQAVPTVIGFRNGDPVD 142
A+ F+V PT+ FR G P D
Sbjct: 197 AKRFDVSGYPTLKIFRKGRPYD 218
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 46/101 (45%), Gaps = 6/101 (5%)
Query: 66 DFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVS----ETTSGVEFVKINVENGGGEIA 121
+F + ++ VL F+ P CG CKQ P+ ++ + + KI+ +A
Sbjct: 24 NFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDA-TSASVLA 82
Query: 122 REFEVQAVPTVIGFRNGDPVDMVVGNADQDVIQTLVSKLSQ 162
F+V PT+ + G VD G+ Q+ I V ++SQ
Sbjct: 83 SRFDVSGYPTIKILKKGQAVDY-EGSRTQEEIVAKVREVSQ 122
>pdb|2DJ2|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 120
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 65 DDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKIST----VSETTSGVEFVKINVENGGGEI 120
D+F + + +L F+ P CG CK+L P+ +S+ + + K++ ++
Sbjct: 15 DNFDDVVNNADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATE-QTDL 73
Query: 121 AREFEVQAVPTVIGFRNGDPVD 142
A+ F+V PT+ FR G P D
Sbjct: 74 AKRFDVSGYPTLKIFRKGRPFD 95
>pdb|3PIN|A Chain A, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In
Complex With Trx2
Length = 104
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 73 GRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTV 132
G V+ FF CG K + P I +E S F K++V+ ++A++ EV ++PT+
Sbjct: 18 GDKLVVVDFFATWCGPSKMIAPMIEKFAEQYSDAAFYKLDVDEVS-DVAQKAEVSSMPTL 76
Query: 133 IGFRNGDPVDMVVGNADQDVIQTLVSKL 160
I ++ G V VVG + Q + S +
Sbjct: 77 IFYKGGKEVTRVVGANPAAIKQAIASNV 104
>pdb|2O89|A Chain A, S. Aureus Thioredoxin P31tC32S MUTANT
Length = 107
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Query: 78 LAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENGGGEIAREFEVQAVPTVIGFR 136
L F+ CG K + P + ++ G + +K++V+ A+ +EV ++PT+I F+
Sbjct: 24 LVDFWATWCGTSKMIAPVLEELAADYEGKADILKLDVDENPSTAAK-YEVMSIPTLIVFK 82
Query: 137 NGDPVDMVVG 146
+G PVD VVG
Sbjct: 83 DGQPVDKVVG 92
>pdb|4DSS|B Chain B, Crystal Structure Of Peroxiredoxin Ahp1 From Saccharomyces
Cerevisiae In Complex With Thioredoxin Trx2
Length = 112
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 73 GRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTV 132
G V+ FF CG K + P I +E S F K++V+ ++A++ EV ++PT+
Sbjct: 26 GDKLVVVDFFATWCGPSKMIAPMIEKFAEQYSDAAFYKLDVDEVS-DVAQKAEVSSMPTL 84
Query: 133 IGFRNGDPVDMVVGNADQDVIQTLVSKL 160
I ++ G V VVG + Q + S +
Sbjct: 85 IFYKGGKEVTRVVGANPAAIKQAIASNV 112
>pdb|2WZ9|A Chain A, Crystal Structure Of The Thioredoxin Domain Of Human Txnl2
Length = 153
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 71 IRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVP 130
++ ++ ++ +F+ P C Q+ ++ +++ V FVK+ E G E++ ++E+ +VP
Sbjct: 29 LKAKSLLVVHFWAPWAPQCAQMNEVMAELAKELPQVSFVKLEAE-GVPEVSEKYEISSVP 87
Query: 131 TVIGFRNGDPVDMVVG 146
T + F+N +D + G
Sbjct: 88 TFLFFKNSQKIDRLDG 103
>pdb|1M7T|A Chain A, Solution Structure And Dynamics Of The Human-Escherichia
Coli Thioredoxin Chimera: Insights Into Thermodynamic
Stability
Length = 107
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 73 GRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTV 132
G V+ F CG CK ++P ++SE S V F++++V++ ++A ++ ++ +PT+
Sbjct: 19 GDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDD-AQDVAPKYGIRGIPTL 77
Query: 133 IGFRNGDPVDMVVG 146
+ F+NG+ VG
Sbjct: 78 LLFKNGEVAATKVG 91
>pdb|1TRS|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRU|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRV|A Chain A, The High-resolution Three-dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRW|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
Length = 105
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 50/88 (56%), Gaps = 2/88 (2%)
Query: 73 GRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTV 132
G V+ F CG CK ++P ++SE S V F++++V++ ++A E EV+A PT
Sbjct: 19 GDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDD-AQDVASEAEVKATPTF 77
Query: 133 IGFRNGDPVDMVVGNADQDVIQTLVSKL 160
F+ G V G A+++ ++ +++L
Sbjct: 78 QFFKKGQKVGEFSG-ANKEKLEATINEL 104
>pdb|1WMJ|A Chain A, Solution Structure Of Thioredoxin Type H From Oryza Sativa
Length = 130
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 77 VLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTVIGFR 136
V+ F CG C+ + P + ++ G F+K++V+ E+A ++ V+A+PT + +
Sbjct: 39 VIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVDVDELK-EVAEKYNVEAMPTFLFIK 97
Query: 137 NGDPVDMVVGNADQDVIQTLVSKLSQKLAT 166
+G D VVG D+ T+V + A+
Sbjct: 98 DGAEADKVVGARKDDLQNTIVKHVGATAAS 127
>pdb|2VM1|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM2|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
Length = 118
Score = 43.5 bits (101), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 77 VLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTVIGFR 136
V+ F CG C+ + P + ++ G F+K++V+ ++A + V+A+PT + +
Sbjct: 31 VIIDFTASWCGPCRVIAPVFAEYAKKFPGAIFLKVDVDELK-DVAEAYNVEAMPTFLFIK 89
Query: 137 NGDPVDMVVGNADQDVIQTLVS 158
+G+ VD VVG D+ +V+
Sbjct: 90 DGEKVDSVVGGRKDDIHTKIVA 111
>pdb|3HZ4|A Chain A, Crystal Structure Of Thioredoxin From Methanosarcina Mazei
pdb|3HZ4|B Chain B, Crystal Structure Of Thioredoxin From Methanosarcina Mazei
Length = 140
Score = 43.5 bits (101), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 2/91 (2%)
Query: 68 KQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVS-ETTSGVEFVKINVENGGGEIAREFEV 126
+Q + PV+ F+ P+C +CK EP + E S F +IN+ A ++ V
Sbjct: 18 QQVEDSKKPVVVXFYSPACPYCKAXEPYFEEYAKEYGSSAVFGRINIATNPW-TAEKYGV 76
Query: 127 QAVPTVIGFRNGDPVDMVVGNADQDVIQTLV 157
Q PT F +G PV VG +++ V
Sbjct: 77 QGTPTFKFFCHGRPVWEQVGQIYPSILKNAV 107
>pdb|2DJ1|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 140
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 6/101 (5%)
Query: 66 DFKQTIRGRNPVLAYFFKPSCGFCKQLEPK----ISTVSETTSGVEFVKINVENGGGEIA 121
+F + ++ VL F+ P CG CKQ P+ ST+ + + KI+ +A
Sbjct: 26 NFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDA-TSASMLA 84
Query: 122 REFEVQAVPTVIGFRNGDPVDMVVGNADQDVIQTLVSKLSQ 162
+F+V PT+ + G VD G+ Q+ I V ++SQ
Sbjct: 85 SKFDVSGYPTIKILKKGQAVDY-DGSRTQEEIVAKVREVSQ 124
>pdb|2B5E|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase
pdb|3BOA|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase
Length = 504
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
Query: 65 DDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSET--TSGVEFVKIN-VENGGGEIA 121
D F + I+ + VLA FF P CG CK + P+ +ET + +I+ EN ++
Sbjct: 22 DSFNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTEN--QDLC 79
Query: 122 REFEVQAVPTVIGFRNGD 139
E + P++ F+N D
Sbjct: 80 MEHNIPGFPSLKIFKNSD 97
Score = 33.9 bits (76), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 9/77 (11%)
Query: 74 RNPVLAYFFKPSCGFCKQLEPKISTVSET----TSGVEFVKIN-VENGGGEIAREFEVQA 128
+ VL ++ P CG CK+L P +++T TS V K++ EN R ++
Sbjct: 376 KKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTEND----VRGVVIEG 431
Query: 129 VPTVIGFRNGDPVDMVV 145
PT++ + G + VV
Sbjct: 432 YPTIVLYPGGKKSESVV 448
>pdb|2H72|A Chain A, Crystal Structure Of Thioredoxin Mutant E85d In Hexagonal
(P61) Space Group
pdb|2H72|B Chain B, Crystal Structure Of Thioredoxin Mutant E85d In Hexagonal
(P61) Space Group
Length = 108
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 4/90 (4%)
Query: 60 IIEKIDDFKQT--IRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENG 116
II DD T ++ +L F+ CG CK + P + +++ G + K+N++
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQN 63
Query: 117 GGEIAREFEVQAVPTVIGFRNGDPVDMVVG 146
G A ++ ++ +PT++ F+NGD VG
Sbjct: 64 PG-TAPKYGIRGIPTLLLFKNGDVAATKVG 92
>pdb|1AIU|A Chain A, Human Thioredoxin (D60n Mutant, Reduced Form)
Length = 105
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 49/88 (55%), Gaps = 2/88 (2%)
Query: 73 GRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTV 132
G V+ F CG CK ++P ++SE S V F++++V N ++A E EV+ +PT
Sbjct: 19 GDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDV-NDCQDVASECEVKCMPTF 77
Query: 133 IGFRNGDPVDMVVGNADQDVIQTLVSKL 160
F+ G V G A+++ ++ +++L
Sbjct: 78 QFFKKGQKVGEFSG-ANKEKLEATINEL 104
>pdb|2PPT|A Chain A, Crystal Structure Of Thioredoxin-2
pdb|2PPT|B Chain B, Crystal Structure Of Thioredoxin-2
Length = 155
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 41/96 (42%), Gaps = 7/96 (7%)
Query: 57 AYLIIEKIDDFKQTIRGRN-----PVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVK 110
A LI K+ I R P+L F+ P CG C+Q+ P+ + T +G V K
Sbjct: 42 AGLITGKVAGIDPAILARAERDDLPLLVDFWAPWCGPCRQMAPQFQAAAATLAGQVRLAK 101
Query: 111 INVENGGGEIAREFEVQAVPTVIGFRNGDPVDMVVG 146
I+ + +A +Q +P I F G + G
Sbjct: 102 IDTQA-HPAVAGRHRIQGIPAFILFHKGRELARAAG 136
>pdb|2DIY|A Chain A, The Solution Structure Of The Thioredoxin Domain Of Human
Thioredoxin-Like Protein 2
Length = 130
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 71 IRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVP 130
++ ++ ++ +F+ P C Q+ ++ +++ V FVK+ E G E++ ++E+ +VP
Sbjct: 35 LKAKSLLVVHFWAPWAPQCAQMNEVMAELAKELPQVSFVKLEAE-GVPEVSEKYEISSVP 93
Query: 131 TVIGFRNGDPVDMVVG 146
T + F+N +D + G
Sbjct: 94 TFLFFKNSQKIDRLDG 109
>pdb|3HXS|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp
pdb|3HXS|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp
Length = 141
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 45/78 (57%), Gaps = 7/78 (8%)
Query: 61 IEKIDDFKQTIR-----GRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFV-KINVE 114
++KI D++ + G P + F+ CG CK + P + +S+ +G ++ K+NV+
Sbjct: 33 LKKIADYENHSKEWKYLGDKPAIVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVD 92
Query: 115 NGGGEIAREFEVQAVPTV 132
E+AR+F +Q++PT+
Sbjct: 93 K-EPELARDFGIQSIPTI 109
>pdb|2FD3|A Chain A, Crystal Structure Of Thioredoxin Mutant P34h
pdb|2FD3|B Chain B, Crystal Structure Of Thioredoxin Mutant P34h
Length = 108
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 46/90 (51%), Gaps = 4/90 (4%)
Query: 60 IIEKIDDFKQT--IRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENG 116
II DD T ++ +L F+ CG CK + P + +++ G + K+N++
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGHCKMIAPILDEIADEYQGKLTVAKLNIDQN 63
Query: 117 GGEIAREFEVQAVPTVIGFRNGDPVDMVVG 146
G A ++ ++ +PT++ F+NG+ VG
Sbjct: 64 PG-TAPKYGIRGIPTLLLFKNGEVAATKVG 92
>pdb|3UJ1|A Chain A, Crystal Structure Of The Third Thioredoxin Domain Of Human
Erp46
Length = 110
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Query: 81 FFKPSCGFCKQLEPKISTVSETT-SGVEFVKINVENGGGE--IAREFEVQAVPTVIGFRN 137
F+ P CG CK L P +S+ G+ VKI + E I ++ V+ PT++ FR
Sbjct: 23 FYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERNICSKYSVRGYPTLLLFRG 82
Query: 138 GDPVDMVVGNADQDVIQTLVSKLSQ 162
G V G D D + V LSQ
Sbjct: 83 GKKVSEHSGGRDLDSLHRFV--LSQ 105
>pdb|2HSH|A Chain A, Crystal Structure Of C73s Mutant Of Human Thioredoxin-1
Oxidized With H2o2
pdb|1ERV|A Chain A, Human Thioredoxin Mutant With Cys 73 Replaced By Ser
(Reduced Form)
Length = 105
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 51/88 (57%), Gaps = 2/88 (2%)
Query: 73 GRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTV 132
G V+ F CG CK ++P ++SE S V F++++V++ ++A E EV+++PT
Sbjct: 19 GDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDD-CQDVASECEVKSMPTF 77
Query: 133 IGFRNGDPVDMVVGNADQDVIQTLVSKL 160
F+ G V G A+++ ++ +++L
Sbjct: 78 QFFKKGQKVGEFSG-ANKEKLEATINEL 104
>pdb|2H71|A Chain A, Crystal Structure Of Thioredoxin Mutant D47e In Hexagonal
(P61) Space Group
pdb|2H71|B Chain B, Crystal Structure Of Thioredoxin Mutant D47e In Hexagonal
(P61) Space Group
Length = 108
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 4/90 (4%)
Query: 60 IIEKIDDFKQT--IRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENG 116
II DD T ++ +L F+ CG CK + P + ++E G + K+N++
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIAEEYQGKLTVAKLNIDQN 63
Query: 117 GGEIAREFEVQAVPTVIGFRNGDPVDMVVG 146
G A ++ ++ +PT++ F+NG+ VG
Sbjct: 64 PG-TAPKYGIRGIPTLLLFKNGEVAATKVG 92
>pdb|3HYP|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
pdb|3HYP|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
Length = 141
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 44/78 (56%), Gaps = 7/78 (8%)
Query: 61 IEKIDDFKQTIR-----GRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFV-KINVE 114
++KI D++ + G P + F+ CG CK + P + +S+ +G ++ K+NV+
Sbjct: 33 LKKIADYENHSKEWKYLGDKPAIVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVD 92
Query: 115 NGGGEIAREFEVQAVPTV 132
E+AR+F +Q +PT+
Sbjct: 93 K-EPELARDFGIQGIPTI 109
>pdb|1XWA|A Chain A, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|B Chain B, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|C Chain C, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|D Chain D, Drospohila Thioredoxin, Oxidized, P41212
Length = 111
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 56/108 (51%), Gaps = 6/108 (5%)
Query: 53 AIQMAYLIIEKID-DFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVS-ETTSGVEFVK 110
A M Y + +K D D + T V+ FF CG CK + PK+ +S + V +K
Sbjct: 3 AAAMVYQVKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLK 62
Query: 111 INVENGGGEIAREFEVQAVPTVIGFRNGDPVDMVVG-NAD--QDVIQT 155
++V+ +IA E+ + ++PT + +NG V+ G NA +DVI+
Sbjct: 63 VDVDECE-DIAMEYNISSMPTFVFLKNGVKVEEFAGANAKRLEDVIKA 109
>pdb|3UVT|A Chain A, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|B Chain B, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|C Chain C, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|D Chain D, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|E Chain E, Crystal Structure Of The Third Catalytic Domain Of Erp46
Length = 111
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Query: 81 FFKPSCGFCKQLEPKISTVSETT-SGVEFVKINVENGGGE--IAREFEVQAVPTVIGFRN 137
F+ P CG CK L P +S+ G+ VKI + E I ++ V+ PT++ FR
Sbjct: 28 FYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERNICSKYSVRGYPTLLLFRG 87
Query: 138 GDPVDMVVGNADQDVIQTLVSKLSQ 162
G V G D D + V LSQ
Sbjct: 88 GKKVSEHSGGRDLDSLHRFV--LSQ 110
>pdb|1XFL|A Chain A, Solution Structure Of Thioredoxin H1 From Arabidopsis
Thaliana
Length = 124
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 48/88 (54%), Gaps = 2/88 (2%)
Query: 72 RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPT 131
+ V+ F CG C+ + P + +++ V F+K++ + +A ++ +QA+PT
Sbjct: 36 ESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVLFLKVDTDELKS-VASDWAIQAMPT 94
Query: 132 VIGFRNGDPVDMVVGNADQDVIQTLVSK 159
+ + G +D VVG A +D +Q+ ++K
Sbjct: 95 FMFLKEGKILDKVVG-AKKDELQSTIAK 121
>pdb|3M9J|A Chain A, Crystal Structure Of Human Thioredoxin C6973S DOUBLE
MUTANT, REDUCED Form
pdb|3M9J|B Chain B, Crystal Structure Of Human Thioredoxin C6973S DOUBLE
MUTANT, REDUCED Form
pdb|3M9K|A Chain A, Crystal Structure Of Human Thioredoxin C6973S
DOUBLE-Mutant, Oxidized Form
pdb|3M9K|B Chain B, Crystal Structure Of Human Thioredoxin C6973S
DOUBLE-Mutant, Oxidized Form
Length = 105
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 51/88 (57%), Gaps = 2/88 (2%)
Query: 73 GRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTV 132
G V+ F CG CK ++P ++SE S V F++++V++ ++A E EV+++PT
Sbjct: 19 GDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDD-CQDVASESEVKSMPTF 77
Query: 133 IGFRNGDPVDMVVGNADQDVIQTLVSKL 160
F+ G V G A+++ ++ +++L
Sbjct: 78 QFFKKGQKVGEFSG-ANKEKLEATINEL 104
>pdb|2DIZ|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of
Human Thioredoxin Domain-Containing Protein 5
Length = 117
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Query: 81 FFKPSCGFCKQLEPKISTVSETT-SGVEFVKINVENGGGE--IAREFEVQAVPTVIGFRN 137
F+ P CG CK L P +S+ G+ VKI + E I ++ V+ PT++ FR
Sbjct: 30 FYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERNICSKYSVRGYPTLLLFRG 89
Query: 138 GDPVDMVVGNADQDVIQTLVSKLSQ 162
G V G D D + V LSQ
Sbjct: 90 GKKVSEHSGGRDLDSLHRFV--LSQ 112
>pdb|2IFQ|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2IFQ|C Chain C, Crystal Structure Of S-Nitroso Thioredoxin
Length = 105
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 50/88 (56%), Gaps = 2/88 (2%)
Query: 73 GRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTV 132
G V+ F CG CK ++P ++SE S V F++++V++ ++A E EV+ +PT
Sbjct: 19 GDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDD-CQDVASEXEVKCMPTF 77
Query: 133 IGFRNGDPVDMVVGNADQDVIQTLVSKL 160
F+ G V G A+++ ++ +++L
Sbjct: 78 QFFKKGQKVGEFSG-ANKEKLEATINEL 104
>pdb|2IFQ|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin
pdb|1AUC|A Chain A, Human Thioredoxin (Oxidized With Diamide)
pdb|1ERT|A Chain A, Human Thioredoxin (Reduced Form)
pdb|1ERU|A Chain A, Human Thioredoxin (Oxidized Form)
Length = 105
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 50/88 (56%), Gaps = 2/88 (2%)
Query: 73 GRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTV 132
G V+ F CG CK ++P ++SE S V F++++V++ ++A E EV+ +PT
Sbjct: 19 GDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDD-CQDVASECEVKCMPTF 77
Query: 133 IGFRNGDPVDMVVGNADQDVIQTLVSKL 160
F+ G V G A+++ ++ +++L
Sbjct: 78 QFFKKGQKVGEFSG-ANKEKLEATINEL 104
>pdb|2H75|A Chain A, Crystal Structure Of Thioredoxin Mutant D13e In Hexagonal
(P61) Space Group
pdb|2H75|B Chain B, Crystal Structure Of Thioredoxin Mutant D13e In Hexagonal
(P61) Space Group
Length = 108
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 47/90 (52%), Gaps = 4/90 (4%)
Query: 60 IIEKIDDFKQT--IRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENG 116
II DD +T ++ +L F+ CG CK + P + +++ G + K+N++
Sbjct: 4 IIHLTDDSFETDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQN 63
Query: 117 GGEIAREFEVQAVPTVIGFRNGDPVDMVVG 146
G A ++ ++ +PT++ F+NG+ VG
Sbjct: 64 PG-TAPKYGIRGIPTLLLFKNGEVAATKVG 92
>pdb|2FCH|A Chain A, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|B Chain B, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|C Chain C, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|D Chain D, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|E Chain E, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|F Chain F, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|G Chain G, Crystal Structure Of Thioredoxin Mutant G74s
Length = 108
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 47/90 (52%), Gaps = 4/90 (4%)
Query: 60 IIEKIDDFKQT--IRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENG 116
II DD T ++ +L F+ CG CK + P + +++ G + K+N++
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQN 63
Query: 117 GGEIAREFEVQAVPTVIGFRNGDPVDMVVG 146
G A ++ ++++PT++ F+NG+ VG
Sbjct: 64 PG-TAPKYGIRSIPTLLLFKNGEVAATKVG 92
>pdb|3TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced
Recombinant Human Thioredoxin In Solution
pdb|4TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced
Recombinant Human Thioredoxin In Solution
Length = 105
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 49/88 (55%), Gaps = 2/88 (2%)
Query: 73 GRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTV 132
G V+ F CG CK ++P ++SE S V F++++V++ ++A E EV+ PT
Sbjct: 19 GDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDD-CQDVASECEVKCTPTF 77
Query: 133 IGFRNGDPVDMVVGNADQDVIQTLVSKL 160
F+ G V G A+++ ++ +++L
Sbjct: 78 QFFKKGQKVGEFSG-ANKEKLEATINEL 104
>pdb|2I4A|A Chain A, Crystal Structure Of Thioredoxin From The Acidophile
Acetobacter Aceti
Length = 107
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 47/91 (51%), Gaps = 2/91 (2%)
Query: 68 KQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENGGGEIAREFEV 126
+ ++ VL F+ CG CK + P + + + +G V K+N+++ E ++V
Sbjct: 14 QDVLKASGLVLVDFWAEWCGPCKMIGPALGEIGKEFAGKVTVAKVNIDDNP-ETPNAYQV 72
Query: 127 QAVPTVIGFRNGDPVDMVVGNADQDVIQTLV 157
+++PT++ R+G +D VG + ++ V
Sbjct: 73 RSIPTLMLVRDGKVIDKKVGALPKSQLKAWV 103
>pdb|1XW9|A Chain A, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|B Chain B, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|C Chain C, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|D Chain D, Drospohila Thioredoxin, Oxidized, P21
pdb|1XWB|A Chain A, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|B Chain B, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|C Chain C, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|D Chain D, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWC|A Chain A, Drosophila Thioredoxin, Reduced, P6522
Length = 106
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 55/105 (52%), Gaps = 6/105 (5%)
Query: 56 MAYLIIEKID-DFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVS-ETTSGVEFVKINV 113
M Y + +K D D + T V+ FF CG CK + PK+ +S + V +K++V
Sbjct: 1 MVYQVKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDV 60
Query: 114 ENGGGEIAREFEVQAVPTVIGFRNGDPVDMVVG-NAD--QDVIQT 155
+ +IA E+ + ++PT + +NG V+ G NA +DVI+
Sbjct: 61 DECE-DIAMEYNISSMPTFVFLKNGVKVEEFAGANAKRLEDVIKA 104
>pdb|1FAA|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Long Form)
Length = 124
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 34/74 (45%)
Query: 73 GRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTV 132
G PV+ F CG CK + PK ++E V F+K++ +A+E ++ VPT
Sbjct: 36 GDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELGIRVVPTF 95
Query: 133 IGFRNGDPVDMVVG 146
+ V V G
Sbjct: 96 KILKENSVVGEVTG 109
>pdb|2H6Z|A Chain A, Crystal Structure Of Thioredoxin Mutant E44d In Hexagonal
(P61) Space Group
pdb|2H6Z|B Chain B, Crystal Structure Of Thioredoxin Mutant E44d In Hexagonal
(P61) Space Group
Length = 108
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 46/90 (51%), Gaps = 4/90 (4%)
Query: 60 IIEKIDDFKQT--IRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENG 116
II DD T ++ +L F+ CG CK + P + +++ G + K+N++
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDDIADEYQGKLTVAKLNIDQN 63
Query: 117 GGEIAREFEVQAVPTVIGFRNGDPVDMVVG 146
G A ++ ++ +PT++ F+NG+ VG
Sbjct: 64 PG-TAPKYGIRGIPTLLLFKNGEVAATKVG 92
>pdb|2H6Y|A Chain A, Crystal Structure Of Thioredoxin Mutant E48d In Hexagonal
(P61) Space Group
pdb|2H6Y|B Chain B, Crystal Structure Of Thioredoxin Mutant E48d In Hexagonal
(P61) Space Group
Length = 108
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 46/90 (51%), Gaps = 4/90 (4%)
Query: 60 IIEKIDDFKQT--IRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENG 116
II DD T ++ +L F+ CG CK + P + +++ G + K+N++
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADDYQGKLTVAKLNIDQN 63
Query: 117 GGEIAREFEVQAVPTVIGFRNGDPVDMVVG 146
G A ++ ++ +PT++ F+NG+ VG
Sbjct: 64 PG-TAPKYGIRGIPTLLLFKNGEVAATKVG 92
>pdb|2TRX|A Chain A, Crystal Structure Of Thioredoxin From Escherichia Coli At
1.68 Angstroms Resolution
pdb|2TRX|B Chain B, Crystal Structure Of Thioredoxin From Escherichia Coli At
1.68 Angstroms Resolution
pdb|1T7P|B Chain B, T7 Dna Polymerase Complexed To Dna PrimerTEMPLATE,A
Nucleoside Triphosphate, And Its Processivity Factor
Thioredoxin
pdb|1SKR|B Chain B, T7 Dna Polymerase Complexed To Dna Primer/template And
Ddatp
pdb|1SKS|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
Template
pdb|1SKW|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template
pdb|1SL0|B Chain B, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL0|D Chain D, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL1|B Chain B, Binary 5' Complex Of T7 Dna Polymerase With A Dna
Primer/template Containing A Cis-syn Thymine Dimer On
The Template
pdb|1SL2|B Chain B, Ternary 5' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
Template And An Incoming Nucleotide
pdb|1TK0|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Ddctp At The Insertion Site
pdb|1TK5|B Chain B, T7 Dna Polymerase Binary Complex With 8 Oxo Guanosine In
The Templating Strand
pdb|1TK8|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Damp At The Elongation Site
pdb|1TKD|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Dcmp At The Elongation Site
pdb|1T8E|B Chain B, T7 Dna Polymerase Ternary Complex With Dctp At The
Insertion Site.
pdb|1X9M|B Chain B, T7 Dna Polymerase In Complex With An N-2-
Acetylaminofluorene-adducted Dna
pdb|1X9S|B Chain B, T7 Dna Polymerase In Complex With A PrimerTEMPLATE DNA
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-Ctp As The Incoming
Nucleotide.
pdb|1X9W|B Chain B, T7 Dna Polymerase In Complex With A Primer/template Dna
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-atp As The Incoming
Nucleotide.
pdb|2BTO|T Chain T, Structure Of Btuba From Prosthecobacter Dejongeii
pdb|1ZYQ|B Chain B, T7 Dna Polymerase In Complex With 8og And Incoming Ddatp
pdb|2AJQ|B Chain B, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2AJQ|I Chain I, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2H6X|A Chain A, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
pdb|2H6X|B Chain B, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
Length = 108
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 46/90 (51%), Gaps = 4/90 (4%)
Query: 60 IIEKIDDFKQT--IRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENG 116
II DD T ++ +L F+ CG CK + P + +++ G + K+N++
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQN 63
Query: 117 GGEIAREFEVQAVPTVIGFRNGDPVDMVVG 146
G A ++ ++ +PT++ F+NG+ VG
Sbjct: 64 PG-TAPKYGIRGIPTLLLFKNGEVAATKVG 92
>pdb|2H74|A Chain A, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
pdb|2H74|B Chain B, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
Length = 108
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 46/90 (51%), Gaps = 4/90 (4%)
Query: 60 IIEKIDDFKQT--IRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENG 116
II DD T ++ +L F+ CG CK + P + +++ G + K+N++
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQN 63
Query: 117 GGEIAREFEVQAVPTVIGFRNGDPVDMVVG 146
G A ++ ++ +PT++ F+NG+ VG
Sbjct: 64 PG-TAPKYGIRGIPTLLLFKNGEVAATKVG 92
>pdb|2EIO|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 46/90 (51%), Gaps = 4/90 (4%)
Query: 60 IIEKIDDFKQT--IRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENG 116
II DD T ++ +L F+ CG CK + P + +++ G + K+N++
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQN 63
Query: 117 GGEIAREFEVQAVPTVIGFRNGDPVDMVVG 146
G A ++ ++ +PT++ F+NG+ VG
Sbjct: 64 PG-TAPKYGIRGIPTLLLFKNGEVAATKVG 92
>pdb|2H73|A Chain A, Crystal Structure Of Thioredoxin Mutant D43e In Hexagonal
(P61) Space Group
pdb|2H73|B Chain B, Crystal Structure Of Thioredoxin Mutant D43e In Hexagonal
(P61) Space Group
Length = 108
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 46/90 (51%), Gaps = 4/90 (4%)
Query: 60 IIEKIDDFKQT--IRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENG 116
II DD T ++ +L F+ CG CK + P + +++ G + K+N++
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILEEIADEYQGKLTVAKLNIDQN 63
Query: 117 GGEIAREFEVQAVPTVIGFRNGDPVDMVVG 146
G A ++ ++ +PT++ F+NG+ VG
Sbjct: 64 PG-TAPKYGIRGIPTLLLFKNGEVAATKVG 92
>pdb|2EIQ|A Chain A, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIQ|B Chain B, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 46/90 (51%), Gaps = 4/90 (4%)
Query: 60 IIEKIDDFKQT--IRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENG 116
II DD T ++ +L F+ CG CK + P + +++ G + K+N++
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQN 63
Query: 117 GGEIAREFEVQAVPTVIGFRNGDPVDMVVG 146
G A ++ ++ +PT++ F+NG+ VG
Sbjct: 64 PG-TAPKYGIRGIPTLLLFKNGEVAACKVG 92
>pdb|1XOB|A Chain A, Thioredoxin (Reduced Dithio Form), Nmr, 20 Structures
pdb|1XOA|A Chain A, Thioredoxin (Oxidized Disulfide Form), Nmr, 20 Structures
Length = 108
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 46/90 (51%), Gaps = 4/90 (4%)
Query: 60 IIEKIDDFKQT--IRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENG 116
II DD T ++ +L F+ CG CK + P + +++ G + K+N++
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQN 63
Query: 117 GGEIAREFEVQAVPTVIGFRNGDPVDMVVG 146
G A ++ ++ +PT++ F+NG+ VG
Sbjct: 64 PG-TAPKYGIRGIPTLLLFKNGEVAATKVG 92
>pdb|2EIR|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 46/90 (51%), Gaps = 4/90 (4%)
Query: 60 IIEKIDDFKQT--IRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENG 116
II DD T ++ +L F+ CG CK + P + +++ G + K+N++
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQN 63
Query: 117 GGEIAREFEVQAVPTVIGFRNGDPVDMVVG 146
G A ++ ++ +PT++ F+NG+ VG
Sbjct: 64 PG-TAPKYGIRGIPTLLLFKNGEVAATKVG 92
>pdb|3DXB|A Chain A, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|B Chain B, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|C Chain C, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|D Chain D, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|E Chain E, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|F Chain F, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|G Chain G, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|H Chain H, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
Length = 222
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 48/94 (51%), Gaps = 4/94 (4%)
Query: 56 MAYLIIEKIDDFKQT--IRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKIN 112
M+ II DD T ++ +L F+ CG CK + P + +++ G + K+N
Sbjct: 10 MSDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLN 69
Query: 113 VENGGGEIAREFEVQAVPTVIGFRNGDPVDMVVG 146
++ G A ++ ++ +PT++ F+NG+ VG
Sbjct: 70 IDQNPG-TAPKYGIRGIPTLLLFKNGEVAATKVG 102
>pdb|3D22|A Chain A, Crystal Structure Of A Poplar Thioredoxin H Mutant,
Pttrxh4c61s
Length = 139
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 77 VLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTVIGFR 136
VLA F CG +Q+ P +SE + F+ I+V+ + + +E++A PT R
Sbjct: 49 VLANFSARWCGPSRQIAPYYIELSENYPSLMFLVIDVDELS-DFSASWEIKATPTFFFLR 107
Query: 137 NGDPVDMVVG 146
+G VD +VG
Sbjct: 108 DGQQVDKLVG 117
>pdb|1ZZY|A Chain A, Crystal Structure Of Thioredoxin Mutant L7v
pdb|1ZZY|B Chain B, Crystal Structure Of Thioredoxin Mutant L7v
Length = 108
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 46/90 (51%), Gaps = 4/90 (4%)
Query: 60 IIEKIDDFKQT--IRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENG 116
II DD T ++ +L F+ CG CK + P + +++ G + K+N++
Sbjct: 4 IIHVTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQN 63
Query: 117 GGEIAREFEVQAVPTVIGFRNGDPVDMVVG 146
G A ++ ++ +PT++ F+NG+ VG
Sbjct: 64 PG-TAPKYGIRGIPTLLLFKNGEVAATKVG 92
>pdb|1F9M|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
pdb|1F9M|B Chain B, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
Length = 112
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 34/74 (45%)
Query: 73 GRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTV 132
G PV+ F CG CK + PK ++E V F+K++ +A+E ++ VPT
Sbjct: 24 GDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELGIRVVPTF 83
Query: 133 IGFRNGDPVDMVVG 146
+ V V G
Sbjct: 84 KILKENSVVGEVTG 97
>pdb|2H76|A Chain A, Crystal Structure Of Thioredoxin Mutant D10e In Hexagonal
(P61) Space Group
pdb|2H76|B Chain B, Crystal Structure Of Thioredoxin Mutant D10e In Hexagonal
(P61) Space Group
Length = 108
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 71 IRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENGGGEIAREFEVQAV 129
++ +L F+ CG CK + P + +++ G + K+N++ G A ++ ++ +
Sbjct: 17 LKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPG-TAPKYGIRGI 75
Query: 130 PTVIGFRNGDPVDMVVG 146
PT++ F+NG+ VG
Sbjct: 76 PTLLLFKNGEVAATKVG 92
>pdb|2H70|A Chain A, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
pdb|2H70|B Chain B, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
Length = 108
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 71 IRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENGGGEIAREFEVQAV 129
++ +L F+ CG CK + P + +++ G + K+N++ G A ++ ++ +
Sbjct: 17 LKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPG-TAPKYGIRGI 75
Query: 130 PTVIGFRNGDPVDMVVG 146
PT++ F+NG+ VG
Sbjct: 76 PTLLLFKNGEVAATKVG 92
>pdb|2VLT|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The
Oxidized State
pdb|2VLT|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The
Oxidized State
pdb|2VLU|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLU|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
Length = 122
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 73 GRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTV 132
+ V+ F CG C+ + P + +++ F+K++V+ IA +F V+A+PT
Sbjct: 33 AKKLVVIDFTASWCGPCRIMAPVFADLAKKFPNAVFLKVDVDELKP-IAEQFSVEAMPTF 91
Query: 133 IGFRNGDPVDMVVGNADQDV 152
+ + GD D VVG +++
Sbjct: 92 LFMKEGDVKDRVVGAIKEEL 111
>pdb|1TXX|A Chain A, Active-Site Variant Of E.Coli Thioredoxin
Length = 108
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 46/90 (51%), Gaps = 4/90 (4%)
Query: 60 IIEKIDDFKQT--IRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENG 116
II DD T ++ +L F+ C +CK + P + +++ G + K+N++
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCVWCKMIAPILDEIADEYQGKLTVAKLNIDQN 63
Query: 117 GGEIAREFEVQAVPTVIGFRNGDPVDMVVG 146
G A ++ ++ +PT++ F+NG+ VG
Sbjct: 64 PG-TAPKYGIRGIPTLLLFKNGEVAATKVG 92
>pdb|2DJ3|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 133
Score = 40.0 bits (92), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 5/95 (5%)
Query: 74 RNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENGGGEIARE-FEVQAVPT 131
+ VL F+ P CG CKQLEP +++ + G + V ++ +I + ++V+ PT
Sbjct: 25 KKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDATANDITNDQYKVEGFPT 84
Query: 132 VIGFRNGD---PVDMVVGNADQDVIQTLVSKLSQK 163
+ +GD P+ GN D + + + + + K
Sbjct: 85 IYFAPSGDKKNPIKFEGGNRDLEHLSKFIDEHATK 119
>pdb|3DYR|A Chain A, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In
Its Oxidized Form
pdb|3DYR|B Chain B, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In
Its Oxidized Form
Length = 111
Score = 40.0 bits (92), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 45/90 (50%), Gaps = 4/90 (4%)
Query: 60 IIEKIDDFKQT--IRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENG 116
II DD T ++ +L F+ CG CK + P + +++ G + K+N++
Sbjct: 5 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQN 64
Query: 117 GGEIAREFEVQAVPTVIGFRNGDPVDMVVG 146
G A ++ ++ PT++ F+NG+ VG
Sbjct: 65 PG-TAPKYGIRGTPTLLLFKNGEVAATKVG 93
>pdb|1SRX|A Chain A, Three-Dimensional Structure Of Escherichia Coli
Thioredoxin-S2 To 2.8 Angstroms Resolution
Length = 108
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 4/90 (4%)
Query: 60 IIEKIDDFKQT--IRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENG 116
II DD T ++ +L F+ CG CK + P + +++ G + K+N++
Sbjct: 4 IIHLTDDSFDTDLVKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQN 63
Query: 117 GGEIAREFEVQAVPTVIGFRNGDPVDMVVG 146
G + E + +PT++ F+NG+ VG
Sbjct: 64 PGTAPKYIE-RGIPTLLLFKNGEVAATKVG 92
>pdb|1X5D|A Chain A, The Solution Structure Of The Second Thioredoxin-Like
Domain Of Human Protein Disulfide-Isomerase A6
Length = 133
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 9/111 (8%)
Query: 60 IIEKIDDF--KQTIRGRNPVLAYFFKPSCGFCKQLEPKI----STVSETTSG-VEFVKIN 112
+IE DD K + + + F+ P CG CK LEP+ S V E T G V+ ++
Sbjct: 9 VIELTDDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVD 68
Query: 113 VENGGGEIAREFEVQAVPTVIGFRNGD-PVDMVVGNADQDVIQTLVSKLSQ 162
+A + ++ PT+ F+ G+ PVD G D++ + S
Sbjct: 69 A-TVNQVLASRYGIRGFPTIKIFQKGESPVDYDGGRTRSDIVSRALDLFSD 118
>pdb|2TIR|A Chain A, Crystal Structure Analysis Of A Mutant Escherichia Coli
Thioredoxin In Which Lysine 36 Is Replaced By Glutamic
Acid
Length = 108
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 46/90 (51%), Gaps = 4/90 (4%)
Query: 60 IIEKIDDFKQT--IRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENG 116
II DD T ++ +L F+ CG C+ + P + +++ G + K+N++
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCEMIAPILDEIADEYQGKLTVAKLNIDQN 63
Query: 117 GGEIAREFEVQAVPTVIGFRNGDPVDMVVG 146
G A ++ ++ +PT++ F+NG+ VG
Sbjct: 64 PG-TAPKYGIRGIPTLLLFKNGEVAATKVG 92
>pdb|3F8U|A Chain A, TapasinERP57 HETERODIMER
pdb|3F8U|C Chain C, TapasinERP57 HETERODIMER
Length = 481
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 65 DDFKQTIRGRNP-VLAYFFKPSCGFCKQLEPKISTVSETTS-GVEFVKINVENGGGEIAR 122
++F + + N VL F+ P CG CK LEPK + E S V ++ ++
Sbjct: 360 ENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATANDVPS 419
Query: 123 EFEVQAVPTV 132
+EV+ PT+
Sbjct: 420 PYEVRGFPTI 429
Score = 32.7 bits (73), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 2/84 (2%)
Query: 77 VLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENGGGEIAREFEVQAVPTVIGF 135
+L FF P CG K+L P+ + G V K++ ++ V PT+ F
Sbjct: 24 MLVEFFAPWCGHAKRLAPEYEAAATRLKGIVPLAKVDC-TANTNTCNKYGVSGYPTLKIF 82
Query: 136 RNGDPVDMVVGNADQDVIQTLVSK 159
R+G+ G D I + + K
Sbjct: 83 RDGEEAGAYDGPRTADGIVSHLKK 106
>pdb|2DMM|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of
Human Protein Disulfide-Isomerase A3
Length = 142
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 65 DDFKQTIRGRNP-VLAYFFKPSCGFCKQLEPKISTVSETTS-GVEFVKINVENGGGEIAR 122
++F + + N VL F+ P CG CK LEPK + E S V ++ ++
Sbjct: 35 ENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATANDVPS 94
Query: 123 EFEVQAVPTV 132
+EV+ PT+
Sbjct: 95 PYEVRGFPTI 104
>pdb|1THX|A Chain A, Thioredoxin-2
Length = 115
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 69 QTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENGGGEIAREFEVQ 127
+ ++ PVL YF+ CG C+ + P I+ + T S ++ VK+ ++ + ++++V+
Sbjct: 20 EVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNPTTV-KKYKVE 78
Query: 128 AVPTV 132
VP +
Sbjct: 79 GVPAL 83
>pdb|1R26|A Chain A, Crystal Structure Of Thioredoxin From Trypanosoma Brucei
Brucei
Length = 125
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 78 LAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTVIGFRN 137
+A+F CG CK +E + ++ V+F K++ +N EI + V +PT I R+
Sbjct: 41 VAWFTAVWCGPCKTIERPMEKIAYEFPTVKFAKVDADN-NSEIVSKCRVLQLPTFIIARS 99
Query: 138 GDPVDMVVG 146
G + V+G
Sbjct: 100 GKMLGHVIG 108
>pdb|2O8V|B Chain B, Paps Reductase In A Covalent Complex With Thioredoxin C35a
Length = 128
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 4/90 (4%)
Query: 60 IIEKIDDFKQT--IRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENG 116
II DD T ++ +L F+ CG K + P + +++ G + K+N++
Sbjct: 24 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPAKMIAPILDEIADEYQGKLTVAKLNIDQN 83
Query: 117 GGEIAREFEVQAVPTVIGFRNGDPVDMVVG 146
G A ++ ++ +PT++ F+NG+ VG
Sbjct: 84 PG-TAPKYGIRGIPTLLLFKNGEVAATKVG 112
>pdb|1KEB|A Chain A, Crystal Structure Of Double Mutant M37l,P40s E.Coli
Thioredoxin
pdb|1KEB|B Chain B, Crystal Structure Of Double Mutant M37l,P40s E.Coli
Thioredoxin
Length = 108
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 4/90 (4%)
Query: 60 IIEKIDDFKQT--IRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENG 116
II DD T ++ +L F+ CG CK + + +++ G + K+N++
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKLIASILDEIADEYQGKLTVAKLNIDQN 63
Query: 117 GGEIAREFEVQAVPTVIGFRNGDPVDMVVG 146
G A ++ ++ +PT++ F+NG+ VG
Sbjct: 64 PG-TAPKYGIRGIPTLLLFKNGEVAATKVG 92
>pdb|1F6M|C Chain C, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|D Chain D, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|G Chain G, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|H Chain H, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
Length = 108
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 4/90 (4%)
Query: 60 IIEKIDDFKQT--IRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENG 116
II DD T ++ +L F+ CG K + P + +++ G + K+N++
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPSKMIAPILDEIADEYQGKLTVAKLNIDQN 63
Query: 117 GGEIAREFEVQAVPTVIGFRNGDPVDMVVG 146
G A ++ ++ +PT++ F+NG+ VG
Sbjct: 64 PG-TAPKYGIRGIPTLLLFKNGEVAATKVG 92
>pdb|1THO|A Chain A, Crystal Structure Of A Mutant Escherichia Coli Thioredoxin
With An Arginine Insertion In The Active Site
Length = 109
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 60 IIEKIDDFKQT--IRGRNPVLAYFFKPSCGF-CKQLEPKISTVSETTSG-VEFVKINVEN 115
II DD T ++ +L F+ CG CK + P + +++ G + K+N++
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGRPCKMIAPILDEIADEYQGKLTVAKLNIDQ 63
Query: 116 GGGEIAREFEVQAVPTVIGFRNGDPVDMVVG 146
G A ++ ++ +PT++ F+NG+ VG
Sbjct: 64 NPG-TAPKYGIRGIPTLLLFKNGEVAATKVG 93
>pdb|2ALB|A Chain A, Nmr Structure Of The N-Terminal Domain A Of The
Glycoprotein Chaperone Erp57
Length = 113
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 2/84 (2%)
Query: 77 VLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENGGGEIAREFEVQAVPTVIGF 135
+L FF P CG CK+L P+ + G V K++ ++ V PT+ F
Sbjct: 24 MLVEFFAPWCGHCKRLAPEYEAAATRLKGIVPLAKVDC-TANTNTCNKYGVSGYPTLKIF 82
Query: 136 RNGDPVDMVVGNADQDVIQTLVSK 159
R+G+ G D I + + K
Sbjct: 83 RDGEEAGAYDGPRTADGIVSHLKK 106
>pdb|2PU9|C Chain C, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin F
pdb|2PVO|C Chain C, Crystal Srtucture Of The Ternary Complex Between
Thioredoxin F, Ferredoxin, And Ferredoxin: Thioredoxin
Reductase
Length = 111
Score = 36.6 bits (83), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 33/74 (44%)
Query: 73 GRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTV 132
G PV+ F CG K + PK ++E V F+K++ +A+E ++ VPT
Sbjct: 23 GDKPVVLDMFTQWCGPSKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELGIRVVPTF 82
Query: 133 IGFRNGDPVDMVVG 146
+ V V G
Sbjct: 83 KILKENSVVGEVTG 96
>pdb|2IWT|A Chain A, Thioredoxin H2 (Hvtrxh2) In A Mixed Disulfide Complex With
The Target Protein Basi
Length = 125
Score = 36.2 bits (82), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 73 GRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTV 132
+ V+ F CG + + P + +++ F+K++V+ IA +F V+A+PT
Sbjct: 36 AKKLVVIDFTASWCGPSRIMAPVFADLAKKFPNAVFLKVDVDELK-PIAEQFSVEAMPTF 94
Query: 133 IGFRNGDPVDMVVGNADQDV 152
+ + GD D VVG +++
Sbjct: 95 LFMKEGDVKDRVVGAIKEEL 114
>pdb|2F51|A Chain A, Structure Of Trichomonas Vaginalis Thioredoxin
pdb|2F51|B Chain B, Structure Of Trichomonas Vaginalis Thioredoxin
Length = 118
Score = 36.2 bits (82), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 77 VLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTV 132
VL FF CG C++L + +++E V F+K++V+ G A + V ++P +
Sbjct: 26 VLVDFFATWCGPCQRLGQILPSIAEANKDVTFIKVDVDKNGNA-ADAYGVSSIPAL 80
>pdb|1ZCP|A Chain A, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|B Chain B, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|C Chain C, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|D Chain D, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
Length = 108
Score = 36.2 bits (82), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 44/90 (48%), Gaps = 4/90 (4%)
Query: 60 IIEKIDDFKQT--IRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENG 116
II DD T ++ +L F+ C K + P + +++ G + K+N++
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCACAKMIAPILDEIADEYQGKLTVAKLNIDQN 63
Query: 117 GGEIAREFEVQAVPTVIGFRNGDPVDMVVG 146
G A ++ ++ +PT++ F+NG+ VG
Sbjct: 64 PG-TAPKYGIRGIPTLLLFKNGEVAATKVG 92
>pdb|1EP8|A Chain A, Crystal Structure Of A Mutated Thioredoxin, D30a, From
Chlamydomonas Reinhardtii
pdb|1EP8|B Chain B, Crystal Structure Of A Mutated Thioredoxin, D30a, From
Chlamydomonas Reinhardtii
Length = 112
Score = 35.8 bits (81), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 51/95 (53%), Gaps = 6/95 (6%)
Query: 69 QTIRGR---NPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENGGGEIAREF 124
Q +G+ P++ F CG CK + P T+S +G V F+K++V+ +A
Sbjct: 16 QLAKGKEEHKPIVVAFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDA-VAAVAEAA 74
Query: 125 EVQAVPTVIGFRNGDPVDMVVGNADQDVIQTLVSK 159
+ A+PT +++G D +VG A QD ++ LV+K
Sbjct: 75 GITAMPTFHVYKDGVKADDLVG-ASQDKLKALVAK 108
>pdb|1LU4|A Chain A, 1.1 Angstrom Resolution Crystal Structure Of A Secreted
Mycobacterium Tuberculosis Disulfide Oxidoreductase
Homologous To E. Coli Dsbe: Implications For Functions
Length = 136
Score = 35.4 bits (80), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 70 TIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKI 111
+++G+ P + +F+ P C FC P +S V+ V FV I
Sbjct: 21 SLQGK-PAVLWFWTPWCPFCNAEAPSLSQVAAANPAVTFVGI 61
>pdb|3ED3|A Chain A, Crystal Structure Of The Yeast DithiolDISULFIDE
Oxidoreductase Mpd1p
pdb|3ED3|B Chain B, Crystal Structure Of The Yeast DithiolDISULFIDE
Oxidoreductase Mpd1p
Length = 298
Score = 35.0 bits (79), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 78 LAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVE-NGGGEIAREFEVQAVPTVIGF 135
L F+ P CG CK+L ++ G V+ +N + N + +++V PT++ F
Sbjct: 39 LVEFYAPWCGHCKKLSSTFRKAAKRLDGVVQVAAVNCDLNKNKALCAKYDVNGFPTLMVF 98
Query: 136 R 136
R
Sbjct: 99 R 99
>pdb|1EP7|A Chain A, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas
Reinhardtii
pdb|1EP7|B Chain B, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas
Reinhardtii
pdb|1TOF|A Chain A, Thioredoxin H (Oxidized Form), Nmr, 23 Structures
Length = 112
Score = 35.0 bits (79), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 51/95 (53%), Gaps = 6/95 (6%)
Query: 69 QTIRGR---NPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENGGGEIAREF 124
Q +G+ P++ F CG CK + P T+S +G V F+K++V+ +A
Sbjct: 16 QLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDA-VAAVAEAA 74
Query: 125 EVQAVPTVIGFRNGDPVDMVVGNADQDVIQTLVSK 159
+ A+PT +++G D +VG A QD ++ LV+K
Sbjct: 75 GITAMPTFHVYKDGVKADDLVG-ASQDKLKALVAK 108
>pdb|2DML|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A6
Length = 130
Score = 34.7 bits (78), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 42/97 (43%), Gaps = 6/97 (6%)
Query: 68 KQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGE--IAREFE 125
++ I+ L F+ P CG C++L P+ + T+ + VK+ N + ++
Sbjct: 29 REVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAA--TALKDVVKVGAVNADKHQSLGGQYG 86
Query: 126 VQAVPT--VIGFRNGDPVDMVVGNADQDVIQTLVSKL 160
VQ PT + G P D G + ++ +S L
Sbjct: 87 VQGFPTIKIFGANKNKPEDYQGGRTGEAIVDAALSAL 123
>pdb|2HXK|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2HXK|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2HXK|C Chain C, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2IIY|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
Length = 105
Score = 33.9 bits (76), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 49/88 (55%), Gaps = 2/88 (2%)
Query: 73 GRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTV 132
G V+ F CG CK ++P ++SE S V F++++V + ++A E EV+ +PT
Sbjct: 19 GDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDV-DDXQDVASEXEVKCMPTF 77
Query: 133 IGFRNGDPVDMVVGNADQDVIQTLVSKL 160
F+ G V G A+++ ++ +++L
Sbjct: 78 QFFKKGQKVGEFSG-ANKEKLEATINEL 104
>pdb|4EUY|A Chain A, Crystal Structure Of Thioredoxin-Like Protein Bce_0499
From Bacillus Cereus Atcc 10987
Length = 105
Score = 33.5 bits (75), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 64 IDDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIARE 123
I++ I + VL + +CG C K++ V E + VE ++I +++ EIA
Sbjct: 8 IEELATYIEEQQLVLLFIKTENCGVCDVXLRKVNYVLENYNYVEKIEILLQDXQ-EIAGR 66
Query: 124 FEVQAVPTVIGFRNGDPV 141
+ V PTV+ F NG +
Sbjct: 67 YAVFTGPTVLLFYNGKEI 84
>pdb|3VFI|A Chain A, Crystal Structure Of A Metagenomic Thioredoxin
Length = 104
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 66 DFKQTIRGR-NPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENGGGEIARE 123
DF+ +R +P++ F C CK+++P ++ G + F ++ E+ +A E
Sbjct: 8 DFQLEVRQHPDPIIIMFTGSWCQPCKKMKPTFEEMASQMEGDIRFAYMDAEDAEKTMA-E 66
Query: 124 FEVQAVPTVIGFRNG 138
++ +P++ F +G
Sbjct: 67 LNIRTLPSLALFVDG 81
>pdb|3UEM|A Chain A, Crystal Structure Of Human Pdi Bb'a' Domains
Length = 361
Score = 32.3 bits (72), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 26/62 (41%)
Query: 74 RNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTVI 133
+ V F+ P CG CKQL P + ET E + I + +V + PT+
Sbjct: 267 KKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANEVEAVKVHSFPTLK 326
Query: 134 GF 135
F
Sbjct: 327 FF 328
>pdb|1X5C|A Chain A, The Solution Structure Of The Second Thioredoxin-Like
Domain Of Human Protein Disulfide-Isomerase
Length = 121
Score = 32.0 bits (71), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 26/62 (41%)
Query: 74 RNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTVI 133
+ V F+ P CG CKQL P + ET E + I + +V + PT+
Sbjct: 25 KKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANEVEAVKVHSFPTLK 84
Query: 134 GF 135
F
Sbjct: 85 FF 86
>pdb|1OAZ|A Chain A, Ige Fv Spe7 Complexed With A Recombinant Thioredoxin
pdb|1OAZ|B Chain B, Ige Fv Spe7 Complexed With A Recombinant Thioredoxin
Length = 123
Score = 32.0 bits (71), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 87 GFCKQLEPKISTVSETTSG-VEFVKINVENGGGEIAREFEVQAVPTVIGFRNGDPVDMVV 145
G CK + P + +++ G + K+N++ G A ++ ++ +PT++ F+NG+ V
Sbjct: 48 GPCKMIAPILDEIADEYQGKLTVAKLNIDQNPG-TAPKYGIRGIPTLLLFKNGEVAATKV 106
Query: 146 G 146
G
Sbjct: 107 G 107
>pdb|3UL3|B Chain B, Structural Insights Into Thioredoxin-2: A Component Of
Malaria Parasite Protein Secretion Machinery
pdb|3UL3|A Chain A, Structural Insights Into Thioredoxin-2: A Component Of
Malaria Parasite Protein Secretion Machinery
Length = 128
Score = 32.0 bits (71), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 14/62 (22%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 77 VLAYFFKPSCGFCKQLEPKISTVSETT-SGVEFVKINVENGGGEIAREFEVQAVPTVIGF 135
++ YFF C C ++ + + + +K++++ +AR+F V+++PT+I
Sbjct: 45 IVLYFFAKWCQACTMQSTEMDKLQKYYGKRIYLLKVDLDKNES-LARKFSVKSLPTIILL 103
Query: 136 RN 137
+N
Sbjct: 104 KN 105
>pdb|2LST|A Chain A, Solution Structure Of A Thioredoxin From Thermus
Thermophilus
Length = 130
Score = 31.6 bits (70), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 7/63 (11%)
Query: 77 VLAYFFKPSCGFCKQL------EPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVP 130
V+ YF C +C+Q+ +P +S + E V V ++ G E+AR + V P
Sbjct: 22 VMVYFHSEHCPYCQQMNTFVLSDPGVSRLLEARFVVASVSVDTPE-GQELARRYRVPGTP 80
Query: 131 TVI 133
T +
Sbjct: 81 TFV 83
>pdb|2DJJ|A Chain A, Solution Structure Of The A' Domain Of Thermophilic Fungal
Protein Disulfide Isomerase
pdb|2KP1|A Chain A, Solution Structure Of The A' Domain Of Thermophilic Fungal
Protein Disulfide Isomerase
Length = 121
Score = 31.6 bits (70), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 39/96 (40%), Gaps = 9/96 (9%)
Query: 77 VLAYFFKPSCGFCKQLEPKISTVSETTSGVEF----VKINVENGGGEIAREFEVQAVPTV 132
VL F+ P CG CK L PK + + EF V V+ ++ E+Q PT+
Sbjct: 28 VLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATANDVPD--EIQGFPTI 85
Query: 133 IGF---RNGDPVDMVVGNADQDVIQTLVSKLSQKLA 165
+ G PV +D+I+ + K A
Sbjct: 86 KLYPAGAKGQPVTYSGSRTVEDLIKFIAENGKYKAA 121
>pdb|1X5E|A Chain A, The Solution Structure Of The Thioredoxin-Like Domain Of
Human Thioredoxin-Related Transmembrane Protein
Length = 126
Score = 31.6 bits (70), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 81 FFKPSCGFCKQLEPKISTVSETTSGVE--FVKINVENGGGEIAREFEVQAVPTVIGFRNG 138
F+ P C C+ L+P+ + +E +E K++V G R F + A+PT+ ++G
Sbjct: 29 FYAPWCPACQNLQPEWESFAEWGEDLEVNIAKVDVTEQPGLSGR-FIINALPTIYHCKDG 87
Query: 139 D 139
+
Sbjct: 88 E 88
>pdb|2L5L|A Chain A, Solution Structure Of Thioredoxin From Bacteroides
Vulgatus
Length = 136
Score = 30.8 bits (68), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 72 RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENGGGEIAREFEVQAVP 130
G P + F+ CG CK + P + +++ G + K++ E E+A F ++++P
Sbjct: 36 EGDKPAIVDFYADWCGPCKMVAPILDELAKEYDGQIVIYKVDTEK-EQELAGAFGIRSIP 94
Query: 131 TVI 133
+++
Sbjct: 95 SIL 97
>pdb|3D6I|A Chain A, Structure Of The Thioredoxin-Like Domain Of Yeast
Glutaredoxin 3
pdb|3D6I|B Chain B, Structure Of The Thioredoxin-Like Domain Of Yeast
Glutaredoxin 3
Length = 112
Score = 30.8 bits (68), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
Query: 70 TIRGRNPVLAYFFKPSCGFCKQLEPKISTVSE--TTSGVEFVKINVENGGGEIAREFEVQ 127
T G ++ YF CK L+ +S + S V F+ I+ + EI+ FE+
Sbjct: 17 TAAGDKLIVLYFHTSWAEPCKALKQVFEAISNEPSNSNVSFLSIDADENS-EISELFEIS 75
Query: 128 AVPTVIGFRNG 138
AVP I G
Sbjct: 76 AVPYFIIIHKG 86
>pdb|2L6C|A Chain A, Solution Structure Of Desulfothioredoxin From
Desulfovibrio Vulgaris Hildenborough In Its Oxidized
Form
pdb|2L6D|A Chain A, Solution Structure Of Desulfothioredoxin From
Desulfovibrio Vulgaris Hildenborough In Its Reduced Form
Length = 110
Score = 30.4 bits (67), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 19/88 (21%), Positives = 37/88 (42%), Gaps = 1/88 (1%)
Query: 73 GRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTV 132
G + + +F K C CK +E + V ++ E E+ +E + VPT+
Sbjct: 18 GLSDAIVFFHKNLCPHCKNMEKVLDKFGARAPQVAISSVDSE-ARPELMKELGFERVPTL 76
Query: 133 IGFRNGDPVDMVVGNADQDVIQTLVSKL 160
+ R+G + G + +Q L + +
Sbjct: 77 VFIRDGKVAKVFSGIMNPRELQALYASI 104
>pdb|2IN3|A Chain A, Crystal Structure Of A Putative Protein Disulfide
Isomerase From Nitrosomonas Europaea
Length = 216
Score = 30.0 bits (66), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 75 NPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGG 117
PVL Y P C +C P I + + S F+ + + GG
Sbjct: 7 KPVLWYIADPXCSWCWGFAPVIENIRQEYSA--FLTVKIXPGG 47
>pdb|4DVC|A Chain A, Structural And Functional Studies Of Tcpg, The Vibrio
Cholerae Dsba Disulfide-Forming Protein Required For
Pilus And Cholera Toxin Production
Length = 184
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Query: 69 QTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSET-TSGVEFVKINVENGGGEIAREFEVQ 127
+T +PV++ FF C C EP I+ + + G +F K +V GG + + +
Sbjct: 16 KTPASSSPVVSEFFSFYCPHCNTFEPIIAQLKQQLPEGAKFQKNHVSFMGGNMGQAMS-K 74
Query: 128 AVPTVIGFRNGDPVDMVVGN 147
A T+I D + V+ N
Sbjct: 75 AYATMIALEVEDKMVPVMFN 94
>pdb|2IJY|A Chain A, Nmr Structure Ensemble For The Reduced Dsba Disulphide
Oxidoreductase From Vibrio Cholerae
Length = 181
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Query: 69 QTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSET-TSGVEFVKINVENGGGEIAREFEVQ 127
+T +PV++ FF C C EP I+ + + G +F K +V GG + + +
Sbjct: 13 KTPASSSPVVSEFFSFYCPHCNTFEPIIAQLKQQLPEGAKFQKNHVSFMGGNMGQAMS-K 71
Query: 128 AVPTVIGFRNGDPVDMVVGN 147
A T+I D + V+ N
Sbjct: 72 AYATMIALEVEDKMVPVMFN 91
>pdb|1BED|A Chain A, Structure Of Disulfide Oxidoreductase
Length = 181
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Query: 69 QTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSET-TSGVEFVKINVENGGGEIAREFEVQ 127
+T +PV++ FF C C EP I+ + + G +F K +V GG + + +
Sbjct: 13 KTPASSSPVVSEFFSFYCPHCNTFEPIIAQLKQQLPEGAKFQKNHVSFMGGNMGQAMS-K 71
Query: 128 AVPTVIGFRNGDPVDMVVGN 147
A T+I D + V+ N
Sbjct: 72 AYATMIALEVEDKMVPVMFN 91
>pdb|2R2J|A Chain A, Crystal Structure Of Human Erp44
Length = 382
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 39/91 (42%), Gaps = 11/91 (12%)
Query: 55 QMAYLIIEKIDDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSE-------TTSGVE 107
++ L E ID + + + L F+ C F + L P S+ + V
Sbjct: 6 EITSLDTENID---EILNNADVALVNFYADWCRFSQXLHPIFEEASDVIKEEFPNENQVV 62
Query: 108 FVKINVENGGGEIAREFEVQAVPTVIGFRNG 138
F +++ + +IA+ + + PT+ FRNG
Sbjct: 63 FARVDCDQHS-DIAQRYRISKYPTLKLFRNG 92
>pdb|1JHB|A Chain A, Human Glutaredoxin In Fully Reduced Form, Nmr, 20
Structures
Length = 106
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 81 FFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEI 120
F KP+C +C++ + +S + +EFV I N EI
Sbjct: 18 FIKPTCPYCRRAQEILSQLPIKQGLLEFVDITATNHTNEI 57
>pdb|2B5X|A Chain A, Solution Structure Of A Thioredoxin-Like Protein In The
Reduced Form
pdb|2B5Y|A Chain A, Solution Structure Of A Thioredoxin-Like Protein In The
Oxidized Form
Length = 148
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 68 KQTIRGRNPVLAYFFKPSCGFCKQLEPKIS 97
++ + G P L +F+ SC CK+ P+++
Sbjct: 23 REQLIGEKPTLIHFWSISCHLCKEAMPQVN 52
>pdb|2K8V|A Chain A, Solution Structure Of Oxidised Erp18
Length = 157
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 65 DDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTS-GVEFVKINV 113
D K+ P++ K CG CK L+PK + +E + FV +N+
Sbjct: 30 DGKKEAAASGLPLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNL 79
>pdb|1SEN|A Chain A, Endoplasmic Reticulum Protein Rp19 O95881
Length = 164
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 76 PVLAYFFKPSCGFCKQLEPKISTVSETTS-GVEFVKINV 113
P++ K CG CK L+PK + +E + FV +N+
Sbjct: 48 PLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNL 86
>pdb|3ZZI|A Chain A, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae
pdb|3ZZI|B Chain B, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae
pdb|3ZZI|C Chain C, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae
pdb|3ZZI|D Chain D, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae
pdb|3ZZI|E Chain E, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae
pdb|3ZZI|F Chain F, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae
pdb|3ZZI|G Chain G, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae
pdb|3ZZI|H Chain H, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae
pdb|4AB7|A Chain A, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae Complexed With Its
Substrate N-Acetylglutamate
pdb|4AB7|B Chain B, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae Complexed With Its
Substrate N-Acetylglutamate
pdb|4AB7|C Chain C, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae Complexed With Its
Substrate N-Acetylglutamate
pdb|4AB7|D Chain D, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae Complexed With Its
Substrate N-Acetylglutamate
pdb|4AB7|E Chain E, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae Complexed With Its
Substrate N-Acetylglutamate
pdb|4AB7|F Chain F, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae Complexed With Its
Substrate N-Acetylglutamate
pdb|4AB7|G Chain G, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae Complexed With Its
Substrate N-Acetylglutamate
pdb|4AB7|H Chain H, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae Complexed With Its
Substrate N-Acetylglutamate
Length = 464
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 94 PKISTVSETTSGVEFVKINVENGGGEIAREFE 125
P +++++ET SG + + +N + GE+AR FE
Sbjct: 183 PILTSLAETASG-QMLNVNADVAAGELARVFE 213
>pdb|1KTE|A Chain A, Crystal Structure Of Thioltransferase At 2.2 Angstrom
Resolution
Length = 105
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 81 FFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEI 120
F KP+C FC++ + +S + +EFV I + EI
Sbjct: 17 FIKPTCPFCRKTQELLSQLPFKEGLLEFVDITATSDTNEI 56
>pdb|3ZZF|A Chain A, Crystal Structure Of The Amino Acid Kinase Domain From
Saccharomyces Cerevisiae Acetylglutamate Kinase
Complexed With Its Substrate N-Acetylglutamate
pdb|3ZZF|B Chain B, Crystal Structure Of The Amino Acid Kinase Domain From
Saccharomyces Cerevisiae Acetylglutamate Kinase
Complexed With Its Substrate N-Acetylglutamate
pdb|3ZZF|C Chain C, Crystal Structure Of The Amino Acid Kinase Domain From
Saccharomyces Cerevisiae Acetylglutamate Kinase
Complexed With Its Substrate N-Acetylglutamate
pdb|3ZZF|D Chain D, Crystal Structure Of The Amino Acid Kinase Domain From
Saccharomyces Cerevisiae Acetylglutamate Kinase
Complexed With Its Substrate N-Acetylglutamate
pdb|3ZZG|A Chain A, Crystal Structure Of The Amino Acid Kinase Domain From
Saccharomyces Cerevisiae Acetylglutamate Kinase Without
Ligands
pdb|3ZZG|B Chain B, Crystal Structure Of The Amino Acid Kinase Domain From
Saccharomyces Cerevisiae Acetylglutamate Kinase Without
Ligands
pdb|3ZZG|C Chain C, Crystal Structure Of The Amino Acid Kinase Domain From
Saccharomyces Cerevisiae Acetylglutamate Kinase Without
Ligands
pdb|3ZZG|D Chain D, Crystal Structure Of The Amino Acid Kinase Domain From
Saccharomyces Cerevisiae Acetylglutamate Kinase Without
Ligands
pdb|3ZZH|A Chain A, Crystal Structure Of The Amino Acid Kinase Domain From
Saccharomyces Cerevisiae Acetylglutamate Kinase In
Complex With Its Feed-Back Inhibitor L-Arginine
pdb|3ZZH|B Chain B, Crystal Structure Of The Amino Acid Kinase Domain From
Saccharomyces Cerevisiae Acetylglutamate Kinase In
Complex With Its Feed-Back Inhibitor L-Arginine
pdb|3ZZH|C Chain C, Crystal Structure Of The Amino Acid Kinase Domain From
Saccharomyces Cerevisiae Acetylglutamate Kinase In
Complex With Its Feed-Back Inhibitor L-Arginine
pdb|3ZZH|D Chain D, Crystal Structure Of The Amino Acid Kinase Domain From
Saccharomyces Cerevisiae Acetylglutamate Kinase In
Complex With Its Feed-Back Inhibitor L-Arginine
Length = 307
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 94 PKISTVSETTSGVEFVKINVENGGGEIAREFE 125
P +++++ET SG + + +N + GE+AR FE
Sbjct: 183 PILTSLAETASG-QMLNVNADVAAGELARVFE 213
>pdb|3PL1|A Chain A, Determination Of The Crystal Structure Of The
Pyrazinamidase From M.Tuberculosis : A
Structure-Function Analysis For Prediction Resistance To
Pyrazinamide
Length = 186
Score = 27.3 bits (59), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Query: 136 RNGDPVDMVVGNADQDVIQTLVSKLSQKLATHYQVDLTTGTPDQVYLIVL--LRYDQVYL 193
R D VD+V D V QT + LAT VDLT G + L +R V L
Sbjct: 123 RGVDEVDVVGIATDHCVRQTAEDAVRNGLATRVLVDLTAGVSADTTVAALEEMRTASVEL 182
Query: 194 IVCSS 198
VCSS
Sbjct: 183 -VCSS 186
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,299,100
Number of Sequences: 62578
Number of extensions: 193065
Number of successful extensions: 688
Number of sequences better than 100.0: 151
Number of HSP's better than 100.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 65
Number of HSP's that attempted gapping in prelim test: 522
Number of HSP's gapped (non-prelim): 155
length of query: 201
length of database: 14,973,337
effective HSP length: 94
effective length of query: 107
effective length of database: 9,091,005
effective search space: 972737535
effective search space used: 972737535
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)