Query psy5680
Match_columns 201
No_of_seqs 165 out of 2216
Neff 8.9
Searched_HMMs 46136
Date Fri Aug 16 23:56:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5680.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5680hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0910|consensus 99.9 4.5E-25 9.8E-30 160.1 11.9 103 58-162 45-149 (150)
2 PF00085 Thioredoxin: Thioredo 99.9 8.7E-23 1.9E-27 141.6 14.8 101 58-160 1-103 (103)
3 cd03006 PDI_a_EFP1_N PDIa fami 99.9 4.3E-23 9.4E-28 146.1 12.5 97 58-156 11-112 (113)
4 cd02954 DIM1 Dim1 family; Dim1 99.9 1.1E-22 2.3E-27 143.3 14.3 96 64-160 2-110 (114)
5 cd03003 PDI_a_ERdj5_N PDIa fam 99.9 4.9E-23 1.1E-27 143.2 11.6 97 58-156 3-100 (101)
6 cd03004 PDI_a_ERdj5_C PDIa fam 99.9 7.7E-23 1.7E-27 142.8 11.7 98 58-157 3-104 (104)
7 PHA02278 thioredoxin-like prot 99.9 1.8E-22 4E-27 140.7 13.3 94 63-156 3-100 (103)
8 cd02985 TRX_CDSP32 TRX family, 99.9 3.6E-22 7.8E-27 139.5 13.9 96 62-159 1-101 (103)
9 cd03065 PDI_b_Calsequestrin_N 99.9 1.8E-22 3.9E-27 144.0 12.5 101 58-161 11-119 (120)
10 cd02948 TRX_NDPK TRX domain, T 99.9 6.1E-22 1.3E-26 138.1 13.7 96 61-159 4-101 (102)
11 PLN00410 U5 snRNP protein, DIM 99.9 5.7E-22 1.2E-26 144.7 13.6 112 58-170 5-129 (142)
12 COG3118 Thioredoxin domain-con 99.9 1.9E-22 4.2E-27 160.9 11.4 104 58-163 25-132 (304)
13 KOG0907|consensus 99.9 9E-22 2E-26 137.5 12.9 87 72-160 19-105 (106)
14 PRK09381 trxA thioredoxin; Pro 99.9 2.3E-21 5E-26 136.5 14.0 102 58-161 5-108 (109)
15 cd02956 ybbN ybbN protein fami 99.9 1.2E-21 2.6E-26 134.8 12.2 92 66-158 2-96 (96)
16 cd02963 TRX_DnaJ TRX domain, D 99.9 1.2E-21 2.6E-26 138.6 11.6 98 60-159 8-110 (111)
17 cd02996 PDI_a_ERp44 PDIa famil 99.9 1.7E-21 3.6E-26 137.1 12.1 98 58-157 3-108 (108)
18 PRK10996 thioredoxin 2; Provis 99.9 3.8E-21 8.2E-26 141.3 14.3 102 58-161 37-139 (139)
19 cd02999 PDI_a_ERp44_like PDIa 99.9 2E-21 4.3E-26 135.0 11.0 90 66-157 8-100 (100)
20 cd02994 PDI_a_TMX PDIa family, 99.9 4.8E-21 1E-25 133.0 12.6 97 58-159 3-101 (101)
21 cd02989 Phd_like_TxnDC9 Phosdu 99.9 1.1E-20 2.4E-25 134.0 14.5 89 58-147 6-94 (113)
22 cd03002 PDI_a_MPD1_like PDI fa 99.9 3.7E-21 8E-26 135.2 11.5 98 58-157 2-108 (109)
23 cd03005 PDI_a_ERp46 PDIa famil 99.9 9.6E-21 2.1E-25 131.4 12.2 97 58-157 2-102 (102)
24 cd02965 HyaE HyaE family; HyaE 99.9 8.6E-21 1.9E-25 132.8 11.8 95 58-154 12-109 (111)
25 PTZ00051 thioredoxin; Provisio 99.9 2.1E-20 4.6E-25 129.0 13.1 96 58-155 2-97 (98)
26 cd02997 PDI_a_PDIR PDIa family 99.8 2.3E-20 5E-25 129.8 12.4 98 58-157 2-104 (104)
27 PTZ00443 Thioredoxin domain-co 99.8 3.7E-20 8.1E-25 145.5 14.4 106 58-165 32-143 (224)
28 cd03001 PDI_a_P5 PDIa family, 99.8 3.8E-20 8.3E-25 128.6 12.6 98 58-157 2-102 (103)
29 cd02986 DLP Dim1 family, Dim1- 99.8 7.1E-20 1.5E-24 128.2 13.4 97 64-161 2-111 (114)
30 TIGR01068 thioredoxin thioredo 99.8 6.4E-20 1.4E-24 126.6 12.9 98 63-161 2-101 (101)
31 cd02962 TMX2 TMX2 family; comp 99.8 1.1E-19 2.4E-24 134.9 13.3 87 58-146 30-126 (152)
32 TIGR01126 pdi_dom protein disu 99.8 6E-20 1.3E-24 127.1 11.2 97 63-160 2-101 (102)
33 cd02950 TxlA TRX-like protein 99.8 1.2E-19 2.6E-24 133.8 12.6 102 63-164 9-113 (142)
34 cd02957 Phd_like Phosducin (Ph 99.8 4.8E-20 1E-24 130.8 10.1 87 58-147 6-95 (113)
35 cd02984 TRX_PICOT TRX domain, 99.8 1.6E-19 3.5E-24 124.2 12.5 93 63-157 1-96 (97)
36 cd02995 PDI_a_PDI_a'_C PDIa fa 99.8 1E-19 2.2E-24 126.5 11.0 97 58-157 2-104 (104)
37 KOG0908|consensus 99.8 8.7E-20 1.9E-24 141.7 11.1 111 56-168 1-113 (288)
38 cd02998 PDI_a_ERp38 PDIa famil 99.8 2.5E-19 5.3E-24 124.7 10.7 98 58-157 2-105 (105)
39 cd02949 TRX_NTR TRX domain, no 99.8 6.5E-19 1.4E-23 121.6 12.6 91 67-158 5-97 (97)
40 cd02993 PDI_a_APS_reductase PD 99.8 3.7E-19 8E-24 125.4 11.6 98 58-157 3-109 (109)
41 cd02953 DsbDgamma DsbD gamma f 99.8 1.8E-19 3.9E-24 125.8 8.9 94 65-158 2-104 (104)
42 cd03000 PDI_a_TMX3 PDIa family 99.8 1.1E-18 2.3E-23 122.0 11.8 94 64-160 6-103 (104)
43 cd02987 Phd_like_Phd Phosducin 99.8 2.7E-18 5.8E-23 130.7 13.8 88 58-147 64-154 (175)
44 cd02961 PDI_a_family Protein D 99.8 1E-18 2.2E-23 120.0 10.3 96 60-157 2-101 (101)
45 KOG0190|consensus 99.8 5.8E-19 1.3E-23 150.9 10.9 109 58-168 27-139 (493)
46 cd02975 PfPDO_like_N Pyrococcu 99.8 2.6E-18 5.6E-23 121.9 12.1 96 66-162 14-111 (113)
47 TIGR01295 PedC_BrcD bacterioci 99.8 5.6E-18 1.2E-22 121.7 13.4 98 58-158 8-121 (122)
48 PTZ00062 glutaredoxin; Provisi 99.8 7.7E-18 1.7E-22 130.5 14.3 115 63-196 5-120 (204)
49 cd02947 TRX_family TRX family; 99.8 1.4E-17 3.1E-22 112.1 12.3 91 66-157 2-92 (93)
50 cd02988 Phd_like_VIAF Phosduci 99.8 1.8E-17 3.8E-22 127.8 13.2 97 57-158 83-189 (192)
51 cd02951 SoxW SoxW family; SoxW 99.8 2.1E-17 4.6E-22 119.1 12.1 100 64-163 3-121 (125)
52 cd03007 PDI_a_ERp29_N PDIa fam 99.8 9.2E-18 2E-22 118.6 9.8 98 58-160 3-115 (116)
53 cd02992 PDI_a_QSOX PDIa family 99.7 1.1E-17 2.5E-22 118.8 8.9 81 58-140 3-90 (114)
54 TIGR01130 ER_PDI_fam protein d 99.7 2.6E-17 5.6E-22 142.3 12.9 106 58-165 3-113 (462)
55 PTZ00102 disulphide isomerase; 99.7 3E-17 6.4E-22 142.9 13.0 106 58-166 34-143 (477)
56 PTZ00102 disulphide isomerase; 99.7 6.7E-17 1.4E-21 140.7 11.9 104 58-163 359-467 (477)
57 TIGR00424 APS_reduc 5'-adenyly 99.7 1.6E-16 3.5E-21 136.4 13.0 103 57-160 352-462 (463)
58 PLN02309 5'-adenylylsulfate re 99.7 1.8E-16 3.8E-21 136.1 13.1 101 58-160 347-456 (457)
59 TIGR00411 redox_disulf_1 small 99.7 1.6E-15 3.4E-20 101.0 10.9 79 77-160 2-81 (82)
60 cd02982 PDI_b'_family Protein 99.7 9.1E-16 2E-20 106.6 9.8 87 73-160 11-102 (103)
61 cd02952 TRP14_like Human TRX-r 99.7 1.2E-15 2.7E-20 108.5 10.6 81 61-141 6-103 (119)
62 KOG0190|consensus 99.7 2E-16 4.4E-21 135.4 7.6 102 57-162 367-474 (493)
63 KOG4277|consensus 99.6 1.7E-15 3.8E-20 121.0 9.3 116 72-196 41-161 (468)
64 TIGR02187 GlrX_arch Glutaredox 99.6 9.8E-15 2.1E-19 114.8 12.6 89 73-162 18-112 (215)
65 KOG0912|consensus 99.6 2.2E-15 4.7E-20 120.4 8.5 105 63-168 2-113 (375)
66 PRK00293 dipZ thiol:disulfide 99.6 6.3E-15 1.4E-19 130.8 12.0 103 58-160 454-569 (571)
67 cd02959 ERp19 Endoplasmic reti 99.6 3.1E-15 6.8E-20 106.7 7.2 100 64-163 9-115 (117)
68 cd02955 SSP411 TRX domain, SSP 99.6 2.7E-14 5.8E-19 102.6 11.2 100 63-163 4-121 (124)
69 PRK15412 thiol:disulfide inter 99.6 3.4E-14 7.3E-19 109.2 12.6 93 72-166 66-181 (185)
70 TIGR01130 ER_PDI_fam protein d 99.6 1.1E-14 2.5E-19 125.9 10.7 101 58-162 348-455 (462)
71 TIGR02187 GlrX_arch Glutaredox 99.6 4.4E-14 9.5E-19 111.1 11.9 93 63-159 121-214 (215)
72 PF13098 Thioredoxin_2: Thiore 99.6 1.2E-14 2.7E-19 102.4 7.5 86 72-157 3-112 (112)
73 TIGR02738 TrbB type-F conjugat 99.5 9E-14 1.9E-18 103.5 11.3 88 72-160 48-152 (153)
74 PRK11509 hydrogenase-1 operon 99.5 2E-13 4.3E-18 98.4 12.1 107 58-166 19-129 (132)
75 PRK14018 trifunctional thiored 99.5 1E-13 2.3E-18 120.6 12.4 88 72-160 54-172 (521)
76 cd03010 TlpA_like_DsbE TlpA-li 99.5 1E-13 2.2E-18 100.0 10.3 79 73-153 24-126 (127)
77 PHA02125 thioredoxin-like prot 99.5 1.6E-13 3.4E-18 90.2 10.2 71 78-157 2-73 (75)
78 TIGR00385 dsbE periplasmic pro 99.5 1.8E-13 4E-18 104.0 11.9 88 72-162 61-172 (173)
79 TIGR00412 redox_disulf_2 small 99.5 2.5E-13 5.5E-18 89.4 9.7 72 78-157 2-75 (76)
80 PRK03147 thiol-disulfide oxido 99.5 4.6E-13 9.9E-18 101.4 12.4 102 58-160 46-171 (173)
81 TIGR02740 TraF-like TraF-like 99.5 4.7E-13 1E-17 108.6 12.3 89 73-162 165-265 (271)
82 KOG0191|consensus 99.5 3.3E-13 7.1E-18 114.8 11.0 104 64-168 36-141 (383)
83 cd03008 TryX_like_RdCVF Trypar 99.5 3.2E-13 7E-18 99.5 9.3 71 73-143 24-128 (146)
84 cd03011 TlpA_like_ScsD_MtbDsbE 99.5 6.7E-13 1.4E-17 95.0 9.6 96 58-156 5-121 (123)
85 PF13905 Thioredoxin_8: Thiore 99.4 7.7E-13 1.7E-17 90.5 8.6 66 74-139 1-94 (95)
86 cd02973 TRX_GRX_like Thioredox 99.4 9.4E-13 2E-17 84.4 8.4 61 77-140 2-62 (67)
87 PLN02919 haloacid dehalogenase 99.4 1.9E-12 4.2E-17 122.0 12.9 93 73-166 419-541 (1057)
88 PRK13728 conjugal transfer pro 99.4 3.9E-12 8.5E-17 96.6 11.9 85 78-163 73-173 (181)
89 cd03026 AhpF_NTD_C TRX-GRX-lik 99.4 2.8E-12 6.1E-17 87.0 9.7 77 73-154 11-87 (89)
90 cd02958 UAS UAS family; UAS is 99.4 5.3E-12 1.2E-16 89.5 11.4 94 69-162 12-112 (114)
91 cd02964 TryX_like_family Trypa 99.4 2E-12 4.3E-17 94.0 9.1 71 73-143 16-115 (132)
92 KOG1731|consensus 99.4 2E-13 4.4E-18 117.3 4.4 105 58-164 41-156 (606)
93 COG4232 Thiol:disulfide interc 99.4 2.2E-12 4.7E-17 112.0 9.0 103 59-161 457-568 (569)
94 cd03009 TryX_like_TryX_NRX Try 99.4 4E-12 8.7E-17 92.1 8.6 71 73-143 17-115 (131)
95 cd02966 TlpA_like_family TlpA- 99.4 5.4E-12 1.2E-16 88.0 8.7 74 73-146 18-116 (116)
96 KOG0191|consensus 99.3 4.9E-12 1.1E-16 107.6 9.4 105 58-164 146-255 (383)
97 cd03012 TlpA_like_DipZ_like Tl 99.3 1.2E-11 2.5E-16 89.2 9.7 75 73-147 22-125 (126)
98 PTZ00056 glutathione peroxidas 99.3 1.1E-11 2.4E-16 96.3 10.0 93 73-165 38-182 (199)
99 PF08534 Redoxin: Redoxin; In 99.3 1.3E-11 2.9E-16 90.9 9.6 77 73-149 27-136 (146)
100 PLN02399 phospholipid hydroper 99.3 1.6E-11 3.5E-16 97.4 10.2 106 56-162 82-235 (236)
101 cd02967 mauD Methylamine utili 99.3 1.3E-11 2.8E-16 87.1 8.7 69 73-141 20-109 (114)
102 TIGR01626 ytfJ_HI0045 conserve 99.3 6.3E-11 1.4E-15 90.4 11.0 94 58-157 49-176 (184)
103 PLN02412 probable glutathione 99.3 3.3E-11 7.1E-16 91.2 8.8 91 73-163 28-166 (167)
104 cd02960 AGR Anterior Gradient 99.3 6.6E-11 1.4E-15 85.2 9.8 75 71-147 20-99 (130)
105 TIGR02661 MauD methylamine deh 99.2 6.9E-11 1.5E-15 91.2 10.1 85 73-160 73-178 (189)
106 smart00594 UAS UAS domain. 99.2 1.2E-10 2.7E-15 83.5 10.8 90 68-157 21-121 (122)
107 TIGR02540 gpx7 putative glutat 99.2 1.5E-10 3.1E-15 86.3 9.1 88 73-160 21-152 (153)
108 PF02114 Phosducin: Phosducin; 99.2 2.3E-10 5E-15 92.3 10.4 102 57-160 126-237 (265)
109 cd00340 GSH_Peroxidase Glutath 99.2 1.2E-10 2.7E-15 86.6 7.6 83 73-156 21-151 (152)
110 cd02969 PRX_like1 Peroxiredoxi 99.1 9.1E-10 2E-14 83.4 11.7 96 73-168 24-159 (171)
111 KOG3414|consensus 99.1 1.8E-09 3.9E-14 75.9 11.8 113 57-170 4-129 (142)
112 KOG0911|consensus 99.1 1.2E-10 2.6E-15 89.8 5.4 135 58-196 3-146 (227)
113 KOG1672|consensus 99.1 6E-10 1.3E-14 84.1 8.6 90 58-148 68-157 (211)
114 cd03017 PRX_BCP Peroxiredoxin 99.1 8.8E-10 1.9E-14 80.4 8.1 85 73-157 22-139 (140)
115 PTZ00256 glutathione peroxidas 99.1 1.3E-09 2.9E-14 83.5 9.4 90 73-162 39-182 (183)
116 PF13899 Thioredoxin_7: Thiore 99.0 4E-10 8.7E-15 75.1 5.6 68 67-136 10-81 (82)
117 COG0526 TrxA Thiol-disulfide i 99.0 1.1E-09 2.5E-14 75.7 8.1 84 74-158 32-121 (127)
118 KOG0914|consensus 99.0 4.7E-10 1E-14 86.1 5.7 85 58-143 126-220 (265)
119 COG2143 Thioredoxin-related pr 99.0 5E-09 1.1E-13 76.5 10.7 99 65-163 33-151 (182)
120 TIGR02196 GlrX_YruB Glutaredox 99.0 4.3E-09 9.4E-14 67.8 8.4 68 78-157 2-73 (74)
121 KOG0913|consensus 99.0 4.2E-10 9.2E-15 87.3 3.5 102 58-164 26-129 (248)
122 PF02966 DIM1: Mitosis protein 98.9 8.8E-08 1.9E-12 68.3 14.0 110 58-169 2-125 (133)
123 PRK00522 tpx lipid hydroperoxi 98.9 1.5E-08 3.3E-13 76.6 10.4 74 73-146 43-149 (167)
124 PF13192 Thioredoxin_3: Thiore 98.9 2.2E-08 4.7E-13 65.8 9.5 73 79-158 3-76 (76)
125 cd03014 PRX_Atyp2cys Peroxired 98.9 1.2E-08 2.5E-13 74.9 9.1 85 73-157 25-141 (143)
126 PF13728 TraF: F plasmid trans 98.9 3.3E-08 7.2E-13 77.7 12.0 84 73-157 119-214 (215)
127 TIGR03137 AhpC peroxiredoxin. 98.9 2.8E-08 6.1E-13 76.5 11.4 88 73-160 30-155 (187)
128 TIGR02200 GlrX_actino Glutared 98.9 7.8E-09 1.7E-13 67.5 7.0 70 78-158 2-76 (77)
129 PRK09437 bcp thioredoxin-depen 98.9 1.8E-08 3.9E-13 74.9 9.3 86 73-158 29-150 (154)
130 cd03015 PRX_Typ2cys Peroxiredo 98.9 2.4E-08 5.2E-13 75.8 10.0 88 73-160 28-156 (173)
131 PF00578 AhpC-TSA: AhpC/TSA fa 98.9 1.3E-08 2.9E-13 72.5 7.8 70 73-142 24-123 (124)
132 KOG2501|consensus 98.9 6E-09 1.3E-13 76.7 5.9 70 73-142 32-130 (157)
133 cd01659 TRX_superfamily Thiore 98.8 2.7E-08 5.9E-13 61.2 7.6 60 78-138 1-63 (69)
134 cd02970 PRX_like2 Peroxiredoxi 98.8 4.1E-08 8.8E-13 72.1 9.1 44 73-116 22-68 (149)
135 PF03190 Thioredox_DsbH: Prote 98.8 4.1E-08 9E-13 73.3 9.0 83 58-142 22-117 (163)
136 cd02991 UAS_ETEA UAS family, E 98.8 1.9E-07 4.2E-12 66.3 11.1 91 72-163 15-115 (116)
137 PRK10382 alkyl hydroperoxide r 98.7 2.1E-07 4.5E-12 71.6 11.5 98 58-161 21-156 (187)
138 cd03018 PRX_AhpE_like Peroxire 98.7 1.2E-07 2.5E-12 69.9 9.2 85 73-157 26-147 (149)
139 PF14595 Thioredoxin_9: Thiore 98.7 6.2E-08 1.3E-12 70.1 7.5 74 72-146 39-116 (129)
140 PRK11200 grxA glutaredoxin 1; 98.7 1.9E-07 4.1E-12 62.5 9.4 77 77-161 2-83 (85)
141 TIGR02739 TraF type-F conjugat 98.7 3.6E-07 7.9E-12 73.3 12.5 90 73-163 149-250 (256)
142 PRK13190 putative peroxiredoxi 98.7 2E-07 4.3E-12 72.6 9.8 90 73-162 26-155 (202)
143 PRK10606 btuE putative glutath 98.7 1.2E-07 2.5E-12 72.7 7.9 41 73-114 24-66 (183)
144 PF07449 HyaE: Hydrogenase-1 e 98.6 2.5E-07 5.4E-12 64.3 8.2 93 58-152 11-106 (107)
145 cd02968 SCO SCO (an acronym fo 98.6 1.6E-07 3.4E-12 68.6 7.7 43 73-115 21-69 (142)
146 cd02971 PRX_family Peroxiredox 98.6 1.6E-07 3.4E-12 68.4 7.5 76 73-148 21-130 (140)
147 TIGR02180 GRX_euk Glutaredoxin 98.6 1.6E-07 3.5E-12 62.3 6.9 60 78-141 1-65 (84)
148 PRK13703 conjugal pilus assemb 98.6 1E-06 2.2E-11 70.4 12.5 90 73-163 142-243 (248)
149 PRK15000 peroxidase; Provision 98.6 4.6E-07 9.9E-12 70.5 10.1 89 73-161 33-162 (200)
150 PF13848 Thioredoxin_6: Thiore 98.6 2.5E-06 5.5E-11 64.7 12.8 100 58-159 79-184 (184)
151 TIGR03143 AhpF_homolog putativ 98.5 1E-06 2.2E-11 78.6 11.8 90 63-157 464-554 (555)
152 PF06110 DUF953: Eukaryotic pr 98.5 4.3E-07 9.4E-12 64.5 7.3 76 63-138 4-99 (119)
153 cd02976 NrdH NrdH-redoxin (Nrd 98.5 1.4E-06 3E-11 55.7 8.5 68 78-157 2-73 (73)
154 TIGR02183 GRXA Glutaredoxin, G 98.5 1.3E-06 2.8E-11 58.7 8.5 75 78-160 2-81 (86)
155 PF11009 DUF2847: Protein of u 98.5 1.6E-06 3.5E-11 60.0 8.7 95 59-153 2-104 (105)
156 cd03016 PRX_1cys Peroxiredoxin 98.4 1.9E-06 4.2E-11 67.1 9.6 87 76-162 28-155 (203)
157 PRK13189 peroxiredoxin; Provis 98.4 2.2E-06 4.7E-11 67.8 9.9 89 73-161 34-163 (222)
158 PTZ00137 2-Cys peroxiredoxin; 98.4 3.2E-06 6.9E-11 68.2 10.5 89 73-161 97-225 (261)
159 PRK13599 putative peroxiredoxi 98.4 2.9E-06 6.3E-11 66.7 9.9 88 73-160 27-155 (215)
160 PRK10877 protein disulfide iso 98.4 4.1E-06 8.9E-11 66.6 10.9 82 72-160 105-230 (232)
161 PRK15317 alkyl hydroperoxide r 98.4 3.3E-06 7.1E-11 74.7 11.2 96 59-160 101-197 (517)
162 PRK13191 putative peroxiredoxi 98.4 3.7E-06 8.1E-11 66.1 10.0 89 73-161 32-161 (215)
163 PF01216 Calsequestrin: Calseq 98.3 9.5E-06 2E-10 66.8 10.9 104 58-164 36-147 (383)
164 cd03023 DsbA_Com1_like DsbA fa 98.3 1.1E-05 2.4E-10 59.2 10.2 37 73-109 4-40 (154)
165 KOG3425|consensus 98.3 6.1E-06 1.3E-10 57.8 7.8 75 63-137 11-104 (128)
166 PF00462 Glutaredoxin: Glutare 98.2 9E-06 2E-10 50.5 7.6 55 78-140 1-59 (60)
167 TIGR03140 AhpF alkyl hydropero 98.2 1.9E-05 4.1E-10 69.9 11.5 96 59-160 102-198 (515)
168 KOG3170|consensus 98.2 7.7E-06 1.7E-10 62.4 7.6 100 56-160 91-200 (240)
169 KOG3171|consensus 98.2 6.1E-06 1.3E-10 63.5 6.9 102 57-160 139-250 (273)
170 cd03020 DsbA_DsbC_DsbG DsbA fa 98.2 1.1E-05 2.5E-10 62.4 8.6 78 73-157 76-197 (197)
171 PTZ00253 tryparedoxin peroxida 98.2 1.2E-05 2.6E-10 62.4 8.7 89 73-161 35-164 (199)
172 cd02981 PDI_b_family Protein D 98.1 3.2E-05 6.9E-10 52.6 9.4 93 59-159 2-96 (97)
173 PF05768 DUF836: Glutaredoxin- 98.1 3.5E-05 7.6E-10 51.1 9.0 78 78-158 2-81 (81)
174 TIGR02194 GlrX_NrdH Glutaredox 98.1 3.3E-05 7.1E-10 49.9 7.9 67 78-155 1-70 (72)
175 cd03419 GRX_GRXh_1_2_like Glut 98.1 1.9E-05 4.2E-10 51.9 6.8 59 78-141 2-64 (82)
176 TIGR02190 GlrX-dom Glutaredoxi 98.1 5.2E-05 1.1E-09 49.9 8.6 62 73-141 5-68 (79)
177 PF13462 Thioredoxin_4: Thiore 98.0 8.9E-05 1.9E-09 55.0 10.8 82 73-159 11-162 (162)
178 cd03072 PDI_b'_ERp44 PDIb' fam 98.0 6.3E-05 1.4E-09 53.0 9.2 100 59-162 2-109 (111)
179 KOG2603|consensus 98.0 4.1E-05 8.9E-10 62.2 9.1 104 58-164 42-169 (331)
180 cd02983 P5_C P5 family, C-term 98.0 0.00019 4.1E-09 52.0 11.8 106 58-164 4-118 (130)
181 PRK10329 glutaredoxin-like pro 98.0 0.00015 3.3E-09 48.0 10.4 72 78-161 3-77 (81)
182 cd03019 DsbA_DsbA DsbA family, 98.0 8.1E-05 1.8E-09 56.2 10.1 36 73-108 14-50 (178)
183 PRK11657 dsbG disulfide isomer 98.0 8.7E-05 1.9E-09 59.7 10.4 85 73-158 116-249 (251)
184 cd03029 GRX_hybridPRX5 Glutare 98.0 0.00011 2.3E-09 47.4 8.8 66 78-157 3-71 (72)
185 PHA03050 glutaredoxin; Provisi 97.9 7.5E-05 1.6E-09 52.3 8.0 69 67-141 6-80 (108)
186 cd02066 GRX_family Glutaredoxi 97.9 7.7E-05 1.7E-09 47.2 7.0 57 78-142 2-62 (72)
187 cd03418 GRX_GRXb_1_3_like Glut 97.9 0.00012 2.7E-09 47.2 7.8 56 78-141 2-62 (75)
188 TIGR02181 GRX_bact Glutaredoxi 97.8 6.6E-05 1.4E-09 49.2 6.2 56 78-141 1-60 (79)
189 cd03027 GRX_DEP Glutaredoxin ( 97.8 0.00015 3.3E-09 46.8 7.8 56 78-141 3-62 (73)
190 TIGR02189 GlrX-like_plant Glut 97.8 9.8E-05 2.1E-09 50.9 6.8 57 77-141 9-72 (99)
191 PRK10954 periplasmic protein d 97.8 0.00023 5E-09 55.6 9.6 39 74-112 37-79 (207)
192 TIGR03143 AhpF_homolog putativ 97.8 0.00078 1.7E-08 60.3 13.5 120 64-191 354-477 (555)
193 cd03073 PDI_b'_ERp72_ERp57 PDI 97.7 0.00025 5.5E-09 49.9 8.2 95 63-160 5-110 (111)
194 TIGR00365 monothiol glutaredox 97.6 0.00058 1.3E-08 46.8 8.7 68 65-141 3-78 (97)
195 COG0695 GrxC Glutaredoxin and 97.6 0.00057 1.2E-08 45.1 7.4 57 77-140 2-63 (80)
196 PRK10638 glutaredoxin 3; Provi 97.5 0.00065 1.4E-08 45.0 7.4 56 78-141 4-63 (83)
197 PF07912 ERp29_N: ERp29, N-ter 97.5 0.004 8.7E-08 44.2 11.5 100 58-160 6-118 (126)
198 cd03067 PDI_b_PDIR_N PDIb fami 97.5 0.0013 2.8E-08 44.9 8.5 100 58-158 3-109 (112)
199 PRK10824 glutaredoxin-4; Provi 97.4 0.00061 1.3E-08 48.2 6.7 70 64-142 5-82 (115)
200 cd02972 DsbA_family DsbA famil 97.4 0.001 2.2E-08 44.3 6.9 59 78-136 1-91 (98)
201 cd03028 GRX_PICOT_like Glutare 97.2 0.0023 5E-08 43.1 7.4 60 74-141 7-74 (90)
202 PF00837 T4_deiodinase: Iodoth 97.1 0.006 1.3E-07 48.3 9.5 100 58-160 84-236 (237)
203 COG1225 Bcp Peroxiredoxin [Pos 97.1 0.0066 1.4E-07 45.2 9.2 88 73-160 29-155 (157)
204 COG1331 Highly conserved prote 97.0 0.0027 5.9E-08 57.0 7.5 82 58-141 28-122 (667)
205 cd03066 PDI_b_Calsequestrin_mi 97.0 0.015 3.1E-07 40.1 9.8 95 58-160 2-100 (102)
206 KOG1752|consensus 96.9 0.0044 9.5E-08 43.0 6.6 68 66-141 6-78 (104)
207 PTZ00062 glutaredoxin; Provisi 96.8 0.0074 1.6E-07 47.1 8.0 69 65-141 104-179 (204)
208 PF13743 Thioredoxin_5: Thiore 96.8 0.0081 1.8E-07 45.7 7.7 26 80-105 2-27 (176)
209 PRK12759 bifunctional gluaredo 96.8 0.0058 1.3E-07 52.7 7.5 57 77-141 3-71 (410)
210 cd03069 PDI_b_ERp57 PDIb famil 96.7 0.033 7.1E-07 38.5 9.8 94 58-160 2-103 (104)
211 PF13848 Thioredoxin_6: Thiore 96.6 0.013 2.8E-07 44.2 7.9 73 91-168 7-82 (184)
212 PF01323 DSBA: DSBA-like thior 96.4 0.047 1E-06 41.5 9.7 35 77-111 1-37 (193)
213 cd03013 PRX5_like Peroxiredoxi 96.1 0.049 1.1E-06 40.5 8.0 44 73-116 28-76 (155)
214 COG0386 BtuE Glutathione perox 95.7 0.12 2.7E-06 38.2 8.6 105 56-162 8-161 (162)
215 COG1651 DsbG Protein-disulfide 95.6 0.19 4.2E-06 39.9 10.3 38 119-161 206-243 (244)
216 cd03031 GRX_GRX_like Glutaredo 95.1 0.14 3E-06 37.9 7.4 56 78-141 2-71 (147)
217 cd03068 PDI_b_ERp72 PDIb famil 95.0 0.55 1.2E-05 32.6 9.9 94 58-159 2-106 (107)
218 PF13417 GST_N_3: Glutathione 94.9 0.52 1.1E-05 30.1 9.0 72 80-162 1-72 (75)
219 TIGR03140 AhpF alkyl hydropero 94.9 1.1 2.4E-05 39.8 13.8 91 64-165 7-99 (515)
220 cd03074 PDI_b'_Calsequestrin_C 94.9 0.85 1.8E-05 31.7 10.4 100 59-160 4-119 (120)
221 cd02978 KaiB_like KaiB-like fa 94.9 0.14 3E-06 33.0 5.8 58 77-135 3-62 (72)
222 cd02990 UAS_FAF1 UAS family, F 94.9 1.1 2.3E-05 32.7 11.8 91 72-162 19-134 (136)
223 cd03041 GST_N_2GST_N GST_N fam 94.6 0.48 1E-05 30.5 8.2 72 78-160 2-76 (77)
224 cd03060 GST_N_Omega_like GST_N 94.5 0.14 3.1E-06 32.3 5.5 58 79-140 2-59 (71)
225 cd03037 GST_N_GRX2 GST_N famil 94.5 0.29 6.3E-06 30.8 6.8 69 79-158 2-70 (71)
226 cd03040 GST_N_mPGES2 GST_N fam 94.4 0.67 1.4E-05 29.6 8.5 72 78-161 2-76 (77)
227 PRK15317 alkyl hydroperoxide r 94.4 1.8 3.9E-05 38.5 13.9 91 64-166 7-99 (517)
228 cd02974 AhpF_NTD_N Alkyl hydro 94.1 1.2 2.6E-05 30.2 10.3 83 65-160 8-93 (94)
229 KOG2640|consensus 93.7 0.024 5.2E-07 46.4 0.6 89 72-162 74-163 (319)
230 PF06764 DUF1223: Protein of u 93.7 1.2 2.7E-05 34.6 10.0 81 77-163 1-100 (202)
231 cd03059 GST_N_SspA GST_N famil 93.5 0.72 1.6E-05 28.9 7.3 70 79-159 2-71 (73)
232 PRK09301 circadian clock prote 93.3 0.44 9.5E-06 32.9 6.2 80 73-154 4-86 (103)
233 TIGR02654 circ_KaiB circadian 93.3 0.47 1E-05 31.7 6.1 73 75-149 3-77 (87)
234 COG1999 Uncharacterized protei 93.2 1.5 3.3E-05 34.2 10.0 100 63-162 56-205 (207)
235 PHA03075 glutaredoxin-like pro 93.2 0.17 3.7E-06 35.5 4.1 30 75-104 2-31 (123)
236 KOG2507|consensus 93.2 1.3 2.7E-05 38.2 9.9 91 72-162 16-112 (506)
237 cd02977 ArsC_family Arsenate R 93.1 0.14 3E-06 35.3 3.7 78 78-160 1-86 (105)
238 PF06491 Disulph_isomer: Disul 93.0 2.5 5.5E-05 30.4 10.5 104 58-163 18-134 (136)
239 TIGR02742 TrbC_Ftype type-F co 92.7 0.3 6.5E-06 35.3 5.0 43 118-160 61-114 (130)
240 COG3634 AhpF Alkyl hydroperoxi 92.6 0.62 1.3E-05 39.4 7.3 90 65-159 106-196 (520)
241 COG0278 Glutaredoxin-related p 92.2 0.81 1.8E-05 31.4 6.2 73 64-141 5-82 (105)
242 cd03036 ArsC_like Arsenate Red 91.6 0.32 7E-06 34.0 4.0 34 78-116 1-34 (111)
243 PRK01655 spxA transcriptional 91.5 0.43 9.3E-06 34.4 4.7 34 78-116 2-35 (131)
244 PF09673 TrbC_Ftype: Type-F co 91.2 3.9 8.4E-05 28.7 9.4 84 64-156 10-111 (113)
245 KOG2792|consensus 91.2 1.4 3E-05 35.5 7.5 96 63-163 133-277 (280)
246 TIGR01617 arsC_related transcr 91.1 0.48 1E-05 33.3 4.5 33 79-116 2-34 (117)
247 COG3019 Predicted metal-bindin 91.0 3.4 7.3E-05 30.1 8.7 76 74-160 24-103 (149)
248 cd03035 ArsC_Yffb Arsenate Red 90.6 0.47 1E-05 32.8 4.0 34 78-116 1-34 (105)
249 PF02630 SCO1-SenC: SCO1/SenC; 90.5 0.96 2.1E-05 34.2 6.0 44 73-116 51-99 (174)
250 PF13778 DUF4174: Domain of un 90.1 4 8.7E-05 28.8 8.6 89 72-160 8-111 (118)
251 cd03051 GST_N_GTT2_like GST_N 89.7 0.79 1.7E-05 28.6 4.3 53 79-134 2-57 (74)
252 cd00570 GST_N_family Glutathio 89.1 1 2.2E-05 27.2 4.5 57 79-140 2-59 (71)
253 COG2761 FrnE Predicted dithiol 89.1 1.1 2.3E-05 35.5 5.3 47 118-168 174-220 (225)
254 cd03032 ArsC_Spx Arsenate Redu 88.5 1.3 2.7E-05 31.1 5.0 34 78-116 2-35 (115)
255 KOG1651|consensus 88.3 3.2 7E-05 31.2 7.1 60 56-116 17-78 (171)
256 PRK12559 transcriptional regul 88.1 1 2.2E-05 32.5 4.4 34 78-116 2-35 (131)
257 PF06053 DUF929: Domain of unk 87.4 1.9 4.2E-05 34.6 5.9 67 58-136 46-113 (249)
258 COG3531 Predicted protein-disu 87.3 1.3 2.9E-05 34.2 4.7 45 118-162 164-210 (212)
259 COG4545 Glutaredoxin-related p 86.8 1.9 4E-05 28.0 4.4 57 79-141 5-76 (85)
260 PF07689 KaiB: KaiB domain; I 86.7 0.3 6.5E-06 32.3 0.8 53 81-134 3-57 (82)
261 cd03045 GST_N_Delta_Epsilon GS 86.4 2.1 4.5E-05 26.8 4.7 53 79-134 2-57 (74)
262 cd03055 GST_N_Omega GST_N fami 85.2 3.6 7.8E-05 27.2 5.6 54 78-134 19-72 (89)
263 COG0450 AhpC Peroxiredoxin [Po 84.5 17 0.00036 28.1 9.5 87 74-161 33-161 (194)
264 PRK13344 spxA transcriptional 84.3 2.4 5.1E-05 30.6 4.7 34 78-116 2-35 (132)
265 PF00255 GSHPx: Glutathione pe 84.3 0.83 1.8E-05 31.9 2.2 43 73-116 20-64 (108)
266 cd03052 GST_N_GDAP1 GST_N fami 83.6 7.8 0.00017 24.5 6.5 57 79-140 2-61 (73)
267 COG5429 Uncharacterized secret 82.0 6.3 0.00014 31.4 6.4 85 74-162 41-142 (261)
268 PRK13730 conjugal transfer pil 78.7 4.4 9.5E-05 31.5 4.5 41 118-159 152-192 (212)
269 cd03025 DsbA_FrnE_like DsbA fa 78.6 3.3 7.1E-05 31.2 3.9 27 78-104 3-29 (193)
270 cd03056 GST_N_4 GST_N family, 77.7 13 0.00029 22.8 6.1 57 79-140 2-61 (73)
271 PF01216 Calsequestrin: Calseq 76.7 46 0.001 28.3 10.5 104 57-162 250-369 (383)
272 KOG0912|consensus 76.5 2.1 4.6E-05 35.4 2.4 129 10-171 83-218 (375)
273 COG0821 gcpE 1-hydroxy-2-methy 75.9 13 0.00028 31.2 6.8 104 58-164 239-354 (361)
274 cd03024 DsbA_FrnE DsbA family, 75.2 5.8 0.00012 30.1 4.5 36 118-157 165-200 (201)
275 KOG1422|consensus 72.7 29 0.00062 27.2 7.5 72 85-168 20-92 (221)
276 PF04592 SelP_N: Selenoprotein 72.1 6.4 0.00014 31.3 4.0 44 72-115 24-72 (238)
277 cd03033 ArsC_15kD Arsenate Red 71.4 8.5 0.00018 26.9 4.2 34 78-116 2-35 (113)
278 PF06953 ArsD: Arsenical resis 71.3 35 0.00075 24.4 7.4 59 105-167 40-108 (123)
279 PRK09481 sspA stringent starva 71.3 34 0.00074 26.2 8.0 64 73-141 6-69 (211)
280 PF09695 YtfJ_HI0045: Bacteria 71.0 41 0.0009 25.1 9.6 41 120-160 115-157 (160)
281 cd03061 GST_N_CLIC GST_N famil 70.8 29 0.00063 23.3 8.1 66 83-162 19-87 (91)
282 cd03058 GST_N_Tau GST_N family 69.1 25 0.00054 21.8 7.3 69 79-159 2-72 (74)
283 PF04134 DUF393: Protein of un 68.5 8.3 0.00018 26.5 3.6 57 81-139 2-61 (114)
284 cd03053 GST_N_Phi GST_N family 68.3 26 0.00056 21.8 7.4 70 78-158 2-74 (76)
285 KOG1364|consensus 67.8 9.1 0.0002 32.2 4.2 61 106-167 133-195 (356)
286 TIGR00014 arsC arsenate reduct 64.3 13 0.00028 25.9 4.0 33 79-116 2-34 (114)
287 PF07315 DUF1462: Protein of u 63.9 42 0.00091 22.6 7.6 68 85-157 8-92 (93)
288 cd03022 DsbA_HCCA_Iso DsbA fam 63.8 14 0.0003 27.7 4.4 35 118-157 157-191 (192)
289 cd03034 ArsC_ArsC Arsenate Red 63.3 14 0.00031 25.6 4.0 34 78-116 1-34 (112)
290 PF09822 ABC_transp_aux: ABC-t 61.6 83 0.0018 25.2 14.2 69 58-128 9-88 (271)
291 PRK00366 ispG 4-hydroxy-3-meth 61.1 33 0.00072 29.1 6.3 92 64-157 252-353 (360)
292 cd03049 GST_N_3 GST_N family, 57.3 26 0.00057 21.6 4.2 60 79-140 2-61 (73)
293 TIGR00824 EIIA-man PTS system, 56.6 51 0.0011 23.0 5.9 49 148-196 39-91 (116)
294 PF04551 GcpE: GcpE protein; 55.0 51 0.0011 28.0 6.4 95 64-160 252-358 (359)
295 COG3411 Ferredoxin [Energy pro 53.2 38 0.00082 21.2 4.1 32 129-164 17-48 (64)
296 KOG4277|consensus 53.0 68 0.0015 26.8 6.7 93 58-160 136-230 (468)
297 PRK10387 glutaredoxin 2; Provi 52.4 76 0.0017 24.0 6.9 56 80-140 3-58 (210)
298 COG1393 ArsC Arsenate reductas 52.3 19 0.00041 25.4 3.1 21 78-98 3-23 (117)
299 PF11287 DUF3088: Protein of u 51.1 26 0.00057 24.6 3.5 76 85-160 23-106 (112)
300 TIGR00762 DegV EDD domain prot 50.5 40 0.00086 27.3 5.2 78 118-200 13-90 (275)
301 COG5494 Predicted thioredoxin/ 50.4 1.3E+02 0.0027 23.9 7.5 76 77-160 12-87 (265)
302 PF05988 DUF899: Bacterial pro 49.7 63 0.0014 25.4 5.8 78 65-142 58-169 (211)
303 cd03025 DsbA_FrnE_like DsbA fa 47.4 33 0.00071 25.7 4.0 22 118-139 159-180 (193)
304 TIGR02182 GRXB Glutaredoxin, G 47.2 1.3E+02 0.0028 23.1 8.0 56 80-140 2-57 (209)
305 PF03960 ArsC: ArsC family; I 44.7 50 0.0011 22.6 4.3 31 81-116 1-31 (110)
306 cd03038 GST_N_etherase_LigE GS 44.1 83 0.0018 20.0 5.3 67 83-160 13-82 (84)
307 PRK13669 hypothetical protein; 43.0 94 0.002 20.3 5.2 56 96-164 20-75 (78)
308 TIGR00612 ispG_gcpE 1-hydroxy- 43.0 72 0.0016 27.0 5.5 95 59-159 238-343 (346)
309 KOG2244|consensus 42.7 39 0.00085 30.5 4.1 76 58-135 97-184 (786)
310 KOG0911|consensus 42.4 88 0.0019 24.8 5.6 52 83-140 151-204 (227)
311 PF08806 Sep15_SelM: Sep15/Sel 41.3 48 0.001 21.6 3.5 33 127-160 40-75 (78)
312 cd03062 TRX_Fd_Sucrase TRX-lik 40.5 58 0.0013 21.9 4.0 31 129-163 53-85 (97)
313 PRK10026 arsenate reductase; P 39.7 39 0.00084 24.7 3.2 99 78-185 4-116 (141)
314 COG0607 PspE Rhodanese-related 39.7 22 0.00047 23.8 1.8 16 186-201 58-73 (110)
315 cd03044 GST_N_EF1Bgamma GST_N 39.6 81 0.0018 19.5 4.4 56 80-140 3-61 (75)
316 PF14617 CMS1: U3-containing 9 39.6 23 0.0005 28.6 2.1 45 144-201 94-138 (252)
317 PRK10853 putative reductase; P 39.4 36 0.00077 24.0 2.9 34 78-116 2-35 (118)
318 TIGR01616 nitro_assoc nitrogen 38.7 46 0.001 23.7 3.4 104 77-190 2-118 (126)
319 PF00352 TBP: Transcription fa 37.8 82 0.0018 20.6 4.3 63 95-164 20-82 (86)
320 TIGR00862 O-ClC intracellular 35.1 2.3E+02 0.005 22.5 8.3 64 84-160 17-82 (236)
321 COG1307 DegV Uncharacterized p 35.0 1.2E+02 0.0025 24.9 5.6 39 113-154 11-49 (282)
322 PF07700 HNOB: Heme NO binding 34.8 1E+02 0.0022 22.9 5.0 42 73-114 126-169 (171)
323 PF07293 DUF1450: Protein of u 33.8 1.3E+02 0.0027 19.7 4.5 59 93-164 17-75 (78)
324 cd03030 GRX_SH3BGR Glutaredoxi 33.1 1.2E+02 0.0026 20.3 4.5 34 105-141 30-71 (92)
325 PF02645 DegV: Uncharacterised 32.7 1.4E+02 0.0029 24.3 5.7 77 118-200 14-92 (280)
326 cd03050 GST_N_Theta GST_N fami 32.6 1.2E+02 0.0027 18.6 7.7 70 79-159 2-74 (76)
327 TIGR02743 TraW type-F conjugat 32.2 91 0.002 24.3 4.3 38 96-140 158-196 (202)
328 cd03022 DsbA_HCCA_Iso DsbA fam 31.7 90 0.0019 23.2 4.3 32 80-111 3-35 (192)
329 PRK11752 putative S-transferas 31.6 1.7E+02 0.0038 23.4 6.1 56 79-134 45-106 (264)
330 COG3011 Predicted thiol-disulf 31.4 2.1E+02 0.0045 20.9 6.7 65 73-140 5-72 (137)
331 KOG0852|consensus 30.6 2.5E+02 0.0054 21.6 8.1 88 73-161 32-161 (196)
332 cd03054 GST_N_Metaxin GST_N fa 30.0 1.3E+02 0.0029 18.2 7.4 59 83-159 13-71 (72)
333 COG2101 SPT15 TATA-box binding 29.4 1.8E+02 0.004 22.2 5.3 35 130-166 54-88 (185)
334 PF02702 KdpD: Osmosensitive K 29.1 2.9E+02 0.0062 21.8 7.6 67 74-141 4-71 (211)
335 TIGR03765 ICE_PFL_4695 integra 28.9 41 0.00089 23.3 1.7 37 94-134 63-99 (105)
336 cd03076 GST_N_Pi GST_N family, 28.6 1.5E+02 0.0032 18.3 4.5 56 79-140 3-59 (73)
337 PF11072 DUF2859: Protein of u 28.1 48 0.001 24.3 2.0 17 118-134 121-137 (142)
338 PLN02817 glutathione dehydroge 27.6 3.3E+02 0.0071 22.0 7.1 48 84-134 71-118 (265)
339 cd03024 DsbA_FrnE DsbA family, 27.5 1.2E+02 0.0026 22.7 4.3 25 80-104 3-27 (201)
340 KOG0855|consensus 27.0 76 0.0016 24.1 2.9 31 72-103 88-124 (211)
341 TIGR00244 transcriptional regu 26.9 76 0.0016 23.4 2.9 68 126-193 44-124 (147)
342 PRK13738 conjugal transfer pil 26.9 92 0.002 24.4 3.5 38 97-140 157-196 (209)
343 COG3531 Predicted protein-disu 26.7 67 0.0015 25.0 2.7 28 76-103 2-29 (212)
344 PF07511 DUF1525: Protein of u 26.2 1.6E+02 0.0035 20.7 4.3 36 121-160 76-111 (114)
345 PRK00766 hypothetical protein; 26.1 1E+02 0.0023 23.8 3.7 49 105-166 79-127 (194)
346 KOG0324|consensus 26.0 59 0.0013 25.5 2.3 54 79-133 78-133 (214)
347 COG3967 DltE Short-chain dehyd 25.8 1.5E+02 0.0032 23.6 4.4 101 89-200 35-141 (245)
348 KOG1731|consensus 25.7 1.3E+02 0.0027 27.5 4.5 75 97-173 205-281 (606)
349 PF03227 GILT: Gamma interfero 25.7 1.7E+02 0.0038 19.9 4.5 28 78-105 3-33 (108)
350 COG2077 Tpx Peroxiredoxin [Pos 25.4 1.9E+02 0.0042 21.5 4.8 44 73-116 44-87 (158)
351 cd03042 GST_N_Zeta GST_N famil 23.4 1.8E+02 0.0039 17.4 4.7 51 80-134 3-57 (73)
352 cd03021 DsbA_GSTK DsbA family, 23.2 1.5E+02 0.0032 22.7 4.2 39 119-157 170-208 (209)
353 KOG3029|consensus 22.8 4.2E+02 0.009 22.1 6.6 75 76-166 89-166 (370)
354 KOG0868|consensus 22.6 75 0.0016 24.5 2.2 62 73-141 3-68 (217)
355 PF14421 LmjF365940-deam: A di 22.6 1.2E+02 0.0025 23.3 3.2 29 85-116 156-184 (193)
356 COG1628 Endonuclease V homolog 22.5 1.1E+02 0.0023 23.5 3.1 30 105-138 77-106 (185)
357 PF00403 HMA: Heavy-metal-asso 22.4 1.8E+02 0.0039 17.1 4.2 32 82-116 5-36 (62)
358 cd01523 RHOD_Lact_B Member of 21.8 62 0.0013 21.3 1.6 15 187-201 59-73 (100)
359 PLN02378 glutathione S-transfe 21.6 3.7E+02 0.0081 20.5 6.8 52 84-140 18-69 (213)
360 COG1327 Predicted transcriptio 21.4 1.2E+02 0.0026 22.6 3.0 68 126-193 44-124 (156)
361 TIGR03439 methyl_EasF probable 21.0 5E+02 0.011 21.7 8.8 86 74-162 76-184 (319)
362 PF05673 DUF815: Protein of un 20.5 2.9E+02 0.0062 22.4 5.3 69 66-136 42-113 (249)
363 PF08357 SEFIR: SEFIR domain; 20.1 1.6E+02 0.0035 21.0 3.6 23 177-199 47-69 (150)
No 1
>KOG0910|consensus
Probab=99.93 E-value=4.5e-25 Score=160.06 Aligned_cols=103 Identities=29% Similarity=0.602 Sum_probs=98.1
Q ss_pred EEEeCCHhHHHHHH-hCCCcEEEEEECCCChhhHhhHHHHHHHHHhCCC-eEEEEEECCCCchhHHHHCCCCcccEEEEE
Q psy5680 58 YLIIEKIDDFKQTI-RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENGGGEIAREFEVQAVPTVIGF 135 (201)
Q Consensus 58 v~~l~~~~~~~~~~-~~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~-~~~~~vd~~~~~~~l~~~~~v~~~Pti~~~ 135 (201)
+..+ +..+|++.+ .++.||+|+|||+||+||+.+.|.++++..+|.| +.++++|+|++ .+++.+|+|.++||+++|
T Consensus 45 ~~~~-s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~-~ela~~Y~I~avPtvlvf 122 (150)
T KOG0910|consen 45 FNVQ-SDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEH-PELAEDYEISAVPTVLVF 122 (150)
T ss_pred cccc-CHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccc-cchHhhcceeeeeEEEEE
Confidence 4555 999999988 9999999999999999999999999999999998 99999999999 999999999999999999
Q ss_pred eCCeEEEEEeCCCCHHHHHHHHHHHHh
Q psy5680 136 RNGDPVDMVVGNADQDVIQTLVSKLSQ 162 (201)
Q Consensus 136 ~~G~~v~~~~G~~~~~~l~~~i~~~~~ 162 (201)
++|+++.++.|..+.+.+.++|++.+.
T Consensus 123 knGe~~d~~vG~~~~~~l~~~i~k~l~ 149 (150)
T KOG0910|consen 123 KNGEKVDRFVGAVPKEQLRSLIKKFLK 149 (150)
T ss_pred ECCEEeeeecccCCHHHHHHHHHHHhc
Confidence 999999999999999999999999864
No 2
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.90 E-value=8.7e-23 Score=141.61 Aligned_cols=101 Identities=26% Similarity=0.620 Sum_probs=95.5
Q ss_pred EEEeCCHhHHHHHHh-CCCcEEEEEECCCChhhHhhHHHHHHHHHhCCC-eEEEEEECCCCchhHHHHCCCCcccEEEEE
Q psy5680 58 YLIIEKIDDFKQTIR-GRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENGGGEIAREFEVQAVPTVIGF 135 (201)
Q Consensus 58 v~~l~~~~~~~~~~~-~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~-~~~~~vd~~~~~~~l~~~~~v~~~Pti~~~ 135 (201)
|..+ +.++|++.+. ++++++|+||++||++|+.+.|.|.++++.+++ +.|+.+|++++ ++++++|+|.++|++++|
T Consensus 1 v~~l-t~~~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~-~~l~~~~~v~~~Pt~~~~ 78 (103)
T PF00085_consen 1 VIVL-TDENFEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDEN-KELCKKYGVKSVPTIIFF 78 (103)
T ss_dssp SEEE-STTTHHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTS-HHHHHHTTCSSSSEEEEE
T ss_pred CEEC-CHHHHHHHHHccCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhcc-chhhhccCCCCCCEEEEE
Confidence 3567 9999999995 499999999999999999999999999999995 99999999999 999999999999999999
Q ss_pred eCCeEEEEEeCCCCHHHHHHHHHHH
Q psy5680 136 RNGDPVDMVVGNADQDVIQTLVSKL 160 (201)
Q Consensus 136 ~~G~~v~~~~G~~~~~~l~~~i~~~ 160 (201)
++|+.+.++.|..+.+.|.+||+++
T Consensus 79 ~~g~~~~~~~g~~~~~~l~~~i~~~ 103 (103)
T PF00085_consen 79 KNGKEVKRYNGPRNAESLIEFIEKH 103 (103)
T ss_dssp ETTEEEEEEESSSSHHHHHHHHHHH
T ss_pred ECCcEEEEEECCCCHHHHHHHHHcC
Confidence 9999999999999999999999975
No 3
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.90 E-value=4.3e-23 Score=146.11 Aligned_cols=97 Identities=12% Similarity=0.082 Sum_probs=91.3
Q ss_pred EEEeCCHhHHHHH---HhCCCcEEEEEECCCChhhHhhHHHHHHHHHhCCC-eEEEEEECCCCchhHH-HHCCCCcccEE
Q psy5680 58 YLIIEKIDDFKQT---IRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENGGGEIA-REFEVQAVPTV 132 (201)
Q Consensus 58 v~~l~~~~~~~~~---~~~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~-~~~~~vd~~~~~~~l~-~~~~v~~~Pti 132 (201)
+.++ +.++|+++ +.++++++|.|||+||++|+.+.|.++++++.+++ +.|++||++++ .+++ ++|+|.++||+
T Consensus 11 v~~l-~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~-~~l~~~~~~I~~~PTl 88 (113)
T cd03006 11 VLDF-YKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWP-QGKCRKQKHFFYFPVI 88 (113)
T ss_pred eEEe-chhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCC-hHHHHHhcCCcccCEE
Confidence 8999 99999987 38899999999999999999999999999999988 99999999999 8998 59999999999
Q ss_pred EEEeCCeEEEEEeCCCCHHHHHHH
Q psy5680 133 IGFRNGDPVDMVVGNADQDVIQTL 156 (201)
Q Consensus 133 ~~~~~G~~v~~~~G~~~~~~l~~~ 156 (201)
++|++|+...++.|..+.+.|..|
T Consensus 89 ~lf~~g~~~~~y~G~~~~~~i~~~ 112 (113)
T cd03006 89 HLYYRSRGPIEYKGPMRAPYMEKF 112 (113)
T ss_pred EEEECCccceEEeCCCCHHHHHhh
Confidence 999999988899999999999876
No 4
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.90 E-value=1.1e-22 Score=143.29 Aligned_cols=96 Identities=16% Similarity=0.275 Sum_probs=84.4
Q ss_pred HhHHHHHH--hCCCcEEEEEECCCChhhHhhHHHHHHHHHhCCC-eEEEEEECCCCchhHHHHCCCCcccEEEEEeCCeE
Q psy5680 64 IDDFKQTI--RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENGGGEIAREFEVQAVPTVIGFRNGDP 140 (201)
Q Consensus 64 ~~~~~~~~--~~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~-~~~~~vd~~~~~~~l~~~~~v~~~Pti~~~~~G~~ 140 (201)
.++|++.+ ..+++++|.|||+||++|+.|.|.++++++++++ +.|++||++++ ++++++|+|.++||+++|++|+.
T Consensus 2 ~~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~-~~la~~~~V~~iPTf~~fk~G~~ 80 (114)
T cd02954 2 GWAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEV-PDFNKMYELYDPPTVMFFFRNKH 80 (114)
T ss_pred HHHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCC-HHHHHHcCCCCCCEEEEEECCEE
Confidence 57788888 3688999999999999999999999999999998 89999999999 99999999999999999999999
Q ss_pred EEEEeCCC----------CHHHHHHHHHHH
Q psy5680 141 VDMVVGNA----------DQDVIQTLVSKL 160 (201)
Q Consensus 141 v~~~~G~~----------~~~~l~~~i~~~ 160 (201)
+.+..|.. +.+.+++.++.+
T Consensus 81 v~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ 110 (114)
T cd02954 81 MKIDLGTGNNNKINWVFEDKQEFIDIIETI 110 (114)
T ss_pred EEEEcCCCCCceEEEecCcHHHHHHHHHHH
Confidence 99888844 445555555443
No 5
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.90 E-value=4.9e-23 Score=143.22 Aligned_cols=97 Identities=16% Similarity=0.415 Sum_probs=91.6
Q ss_pred EEEeCCHhHHHHHHhCCCcEEEEEECCCChhhHhhHHHHHHHHHhCCC-eEEEEEECCCCchhHHHHCCCCcccEEEEEe
Q psy5680 58 YLIIEKIDDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENGGGEIAREFEVQAVPTVIGFR 136 (201)
Q Consensus 58 v~~l~~~~~~~~~~~~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~-~~~~~vd~~~~~~~l~~~~~v~~~Pti~~~~ 136 (201)
+.++ +.++|++.+.++++++|+||++||++|+.+.|.++++++++++ +.|+.+|++++ +.++++++|.++||+++|+
T Consensus 3 ~~~l-~~~~f~~~v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~-~~~~~~~~v~~~Pt~~~~~ 80 (101)
T cd03003 3 IVTL-DRGDFDAAVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDD-RMLCRSQGVNSYPSLYVFP 80 (101)
T ss_pred eEEc-CHhhHHHHhcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCcc-HHHHHHcCCCccCEEEEEc
Confidence 7788 8999999997779999999999999999999999999999988 99999999999 9999999999999999999
Q ss_pred CCeEEEEEeCCCCHHHHHHH
Q psy5680 137 NGDPVDMVVGNADQDVIQTL 156 (201)
Q Consensus 137 ~G~~v~~~~G~~~~~~l~~~ 156 (201)
+|+.+.++.|..+.+.|.+|
T Consensus 81 ~g~~~~~~~G~~~~~~l~~f 100 (101)
T cd03003 81 SGMNPEKYYGDRSKESLVKF 100 (101)
T ss_pred CCCCcccCCCCCCHHHHHhh
Confidence 99988899999999988876
No 6
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.90 E-value=7.7e-23 Score=142.84 Aligned_cols=98 Identities=19% Similarity=0.429 Sum_probs=91.0
Q ss_pred EEEeCCHhHHHHHH-hCCCcEEEEEECCCChhhHhhHHHHHHHHHhCCC-eEEEEEECCCCchhHHHHCCCCcccEEEEE
Q psy5680 58 YLIIEKIDDFKQTI-RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENGGGEIAREFEVQAVPTVIGF 135 (201)
Q Consensus 58 v~~l~~~~~~~~~~-~~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~-~~~~~vd~~~~~~~l~~~~~v~~~Pti~~~ 135 (201)
+.++ +.++|++.+ ..+++++|.|||+||++|+.+.|.++++++++++ +.|+.+|++++ ++++++|+|.++||+++|
T Consensus 3 v~~l-~~~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~-~~~~~~~~i~~~Pt~~~~ 80 (104)
T cd03004 3 VITL-TPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKY-ESLCQQANIRAYPTIRLY 80 (104)
T ss_pred ceEc-CHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCch-HHHHHHcCCCcccEEEEE
Confidence 6788 899999988 6778999999999999999999999999999977 99999999999 999999999999999999
Q ss_pred eCC-eEEEEEeCCCC-HHHHHHHH
Q psy5680 136 RNG-DPVDMVVGNAD-QDVIQTLV 157 (201)
Q Consensus 136 ~~G-~~v~~~~G~~~-~~~l~~~i 157 (201)
++| +.+.++.|..+ .++|..||
T Consensus 81 ~~g~~~~~~~~G~~~~~~~l~~~i 104 (104)
T cd03004 81 PGNASKYHSYNGWHRDADSILEFI 104 (104)
T ss_pred cCCCCCceEccCCCCCHHHHHhhC
Confidence 887 88889999887 99988875
No 7
>PHA02278 thioredoxin-like protein
Probab=99.89 E-value=1.8e-22 Score=140.66 Aligned_cols=94 Identities=20% Similarity=0.435 Sum_probs=85.1
Q ss_pred CHhHHHHHHhCCCcEEEEEECCCChhhHhhHHHHHHHHHhCCC-eEEEEEECCCCc---hhHHHHCCCCcccEEEEEeCC
Q psy5680 63 KIDDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENGG---GEIAREFEVQAVPTVIGFRNG 138 (201)
Q Consensus 63 ~~~~~~~~~~~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~-~~~~~vd~~~~~---~~l~~~~~v~~~Pti~~~~~G 138 (201)
+.++|.+.+.++++++|+|||+||++|+.+.|.++++++++.. +.|+.+|++.+. ++++++|+|.++||+++|++|
T Consensus 3 ~~~~~~~~i~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~G 82 (103)
T PHA02278 3 SLVDLNTAIRQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKDG 82 (103)
T ss_pred CHHHHHHHHhCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEEECC
Confidence 6788999998899999999999999999999999999988654 789999999751 589999999999999999999
Q ss_pred eEEEEEeCCCCHHHHHHH
Q psy5680 139 DPVDMVVGNADQDVIQTL 156 (201)
Q Consensus 139 ~~v~~~~G~~~~~~l~~~ 156 (201)
+.+.++.|..+.+++.++
T Consensus 83 ~~v~~~~G~~~~~~l~~~ 100 (103)
T PHA02278 83 QLVKKYEDQVTPMQLQEL 100 (103)
T ss_pred EEEEEEeCCCCHHHHHhh
Confidence 999999998888888765
No 8
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.89 E-value=3.6e-22 Score=139.48 Aligned_cols=96 Identities=18% Similarity=0.312 Sum_probs=86.5
Q ss_pred CCHhHHHHHH--hCCCcEEEEEECCCChhhHhhHHHHHHHHHhCCCeEEEEEECCCCch---hHHHHCCCCcccEEEEEe
Q psy5680 62 EKIDDFKQTI--RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGG---EIAREFEVQAVPTVIGFR 136 (201)
Q Consensus 62 ~~~~~~~~~~--~~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~---~l~~~~~v~~~Pti~~~~ 136 (201)
++.++|++.+ .++++++|+|||+||++|+.+.|.+++++++++++.|+.+|++++ . +++++|+|.++||+++|+
T Consensus 1 ~~~~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~-~~~~~l~~~~~V~~~Pt~~~~~ 79 (103)
T cd02985 1 HSVEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDEN-DSTMELCRREKIIEVPHFLFYK 79 (103)
T ss_pred CCHHHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCC-hHHHHHHHHcCCCcCCEEEEEe
Confidence 4788999999 448999999999999999999999999999996699999999987 5 799999999999999999
Q ss_pred CCeEEEEEeCCCCHHHHHHHHHH
Q psy5680 137 NGDPVDMVVGNADQDVIQTLVSK 159 (201)
Q Consensus 137 ~G~~v~~~~G~~~~~~l~~~i~~ 159 (201)
+|+.+.++.| ...+++.+.+..
T Consensus 80 ~G~~v~~~~G-~~~~~l~~~~~~ 101 (103)
T cd02985 80 DGEKIHEEEG-IGPDELIGDVLY 101 (103)
T ss_pred CCeEEEEEeC-CCHHHHHHHHHh
Confidence 9999999999 777777776653
No 9
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.89 E-value=1.8e-22 Score=144.01 Aligned_cols=101 Identities=13% Similarity=0.246 Sum_probs=94.2
Q ss_pred EEEeCCHhHHHHHH-hCCCcEEEEEECCCChh--hH--hhHHHHHHHHHhC--CC-eEEEEEECCCCchhHHHHCCCCcc
Q psy5680 58 YLIIEKIDDFKQTI-RGRNPVLAYFFKPSCGF--CK--QLEPKISTVSETT--SG-VEFVKINVENGGGEIAREFEVQAV 129 (201)
Q Consensus 58 v~~l~~~~~~~~~~-~~~~~vvv~f~a~wC~~--C~--~~~~~l~~l~~~~--~~-~~~~~vd~~~~~~~l~~~~~v~~~ 129 (201)
+..+ |.++|++.+ ..+.+++++||++||++ |+ .+.|.+.+++.++ .+ +.|++||++++ ++++++|+|.++
T Consensus 11 v~~l-t~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~-~~La~~~~I~~i 88 (120)
T cd03065 11 VIDL-NEKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKD-AKVAKKLGLDEE 88 (120)
T ss_pred eeeC-ChhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCC-HHHHHHcCCccc
Confidence 8889 999999999 77889999999999987 99 8999999999888 65 99999999999 999999999999
Q ss_pred cEEEEEeCCeEEEEEeCCCCHHHHHHHHHHHH
Q psy5680 130 PTVIGFRNGDPVDMVVGNADQDVIQTLVSKLS 161 (201)
Q Consensus 130 Pti~~~~~G~~v~~~~G~~~~~~l~~~i~~~~ 161 (201)
||+++|++|+.+. +.|..+.+.|.+||++.+
T Consensus 89 PTl~lfk~G~~v~-~~G~~~~~~l~~~l~~~~ 119 (120)
T cd03065 89 DSIYVFKDDEVIE-YDGEFAADTLVEFLLDLI 119 (120)
T ss_pred cEEEEEECCEEEE-eeCCCCHHHHHHHHHHHh
Confidence 9999999999887 999999999999999875
No 10
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.89 E-value=6.1e-22 Score=138.09 Aligned_cols=96 Identities=14% Similarity=0.407 Sum_probs=89.0
Q ss_pred eCCHhHHHHHHhCCCcEEEEEECCCChhhHhhHHHHHHHHHhCCC--eEEEEEECCCCchhHHHHCCCCcccEEEEEeCC
Q psy5680 61 IEKIDDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG--VEFVKINVENGGGEIAREFEVQAVPTVIGFRNG 138 (201)
Q Consensus 61 l~~~~~~~~~~~~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~--~~~~~vd~~~~~~~l~~~~~v~~~Pti~~~~~G 138 (201)
+++.++|+.++.++++++|+|||+||++|+.+.|.++++++.+++ +.|+.+|++ + ++++++|+|.++||+++|++|
T Consensus 4 i~~~~~~~~~i~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~-~~~~~~~~v~~~Pt~~~~~~g 81 (102)
T cd02948 4 INNQEEWEELLSNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-T-IDTLKRYRGKCEPTFLFYKNG 81 (102)
T ss_pred ccCHHHHHHHHccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-C-HHHHHHcCCCcCcEEEEEECC
Confidence 458999999998899999999999999999999999999999974 789999999 6 789999999999999999999
Q ss_pred eEEEEEeCCCCHHHHHHHHHH
Q psy5680 139 DPVDMVVGNADQDVIQTLVSK 159 (201)
Q Consensus 139 ~~v~~~~G~~~~~~l~~~i~~ 159 (201)
+.+.+..| .+.+.+.++|++
T Consensus 82 ~~~~~~~G-~~~~~~~~~i~~ 101 (102)
T cd02948 82 ELVAVIRG-ANAPLLNKTITE 101 (102)
T ss_pred EEEEEEec-CChHHHHHHHhh
Confidence 99999999 688999988875
No 11
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.89 E-value=5.7e-22 Score=144.72 Aligned_cols=112 Identities=17% Similarity=0.180 Sum_probs=100.9
Q ss_pred EEEeCCHhHHHHHH--hCCCcEEEEEECCCChhhHhhHHHHHHHHHhCCC-eEEEEEECCCCchhHHHHCCCCcccEEE-
Q psy5680 58 YLIIEKIDDFKQTI--RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENGGGEIAREFEVQAVPTVI- 133 (201)
Q Consensus 58 v~~l~~~~~~~~~~--~~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~-~~~~~vd~~~~~~~l~~~~~v~~~Pti~- 133 (201)
+..+++.++|++.+ ..+++++|.|||+||++|+.+.|.++++++++++ +.|+.||+|++ +++++.|+|.+.|+++
T Consensus 5 l~~l~s~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~-~dla~~y~I~~~~t~~~ 83 (142)
T PLN00410 5 LPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEV-PDFNTMYELYDPCTVMF 83 (142)
T ss_pred HhhhCCHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCC-HHHHHHcCccCCCcEEE
Confidence 56677999999999 5689999999999999999999999999999998 89999999999 9999999999777666
Q ss_pred EEeCCe-EEEEEeC--------CCCHHHHHHHHHHHHhhhhhcccc
Q psy5680 134 GFRNGD-PVDMVVG--------NADQDVIQTLVSKLSQKLATHYQV 170 (201)
Q Consensus 134 ~~~~G~-~v~~~~G--------~~~~~~l~~~i~~~~~~~~~~~~~ 170 (201)
+|++|+ .+.+..| ..+.++|.+.++..+.......+.
T Consensus 84 ffk~g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~~~a~~g~~~ 129 (142)
T PLN00410 84 FFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGARKGRGL 129 (142)
T ss_pred EEECCeEEEEEecccccccccccCCHHHHHHHHHHHHHHHhcCCeE
Confidence 889998 7889989 689999999999998887776655
No 12
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=1.9e-22 Score=160.85 Aligned_cols=104 Identities=30% Similarity=0.586 Sum_probs=99.9
Q ss_pred EEEeCCHhHHHHHH---hCCCcEEEEEECCCChhhHhhHHHHHHHHHhCCC-eEEEEEECCCCchhHHHHCCCCcccEEE
Q psy5680 58 YLIIEKIDDFKQTI---RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENGGGEIAREFEVQAVPTVI 133 (201)
Q Consensus 58 v~~l~~~~~~~~~~---~~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~-~~~~~vd~~~~~~~l~~~~~v~~~Pti~ 133 (201)
++++ |..+|.+.+ +...||+|+||+|||++|+.+.|.+++++..|+| +.+++||||.+ +.++.+|||+++||++
T Consensus 25 I~dv-T~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~-p~vAaqfgiqsIPtV~ 102 (304)
T COG3118 25 IKDV-TEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAE-PMVAAQFGVQSIPTVY 102 (304)
T ss_pred ceec-hHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcc-hhHHHHhCcCcCCeEE
Confidence 8999 999999988 5667999999999999999999999999999999 99999999999 9999999999999999
Q ss_pred EEeCCeEEEEEeCCCCHHHHHHHHHHHHhh
Q psy5680 134 GFRNGDPVDMVVGNADQDVIQTLVSKLSQK 163 (201)
Q Consensus 134 ~~~~G~~v~~~~G~~~~~~l~~~i~~~~~~ 163 (201)
.|++|+.+..|.|..+.+.+.+||.+++..
T Consensus 103 af~dGqpVdgF~G~qPesqlr~~ld~~~~~ 132 (304)
T COG3118 103 AFKDGQPVDGFQGAQPESQLRQFLDKVLPA 132 (304)
T ss_pred EeeCCcCccccCCCCcHHHHHHHHHHhcCh
Confidence 999999999999999999999999999877
No 13
>KOG0907|consensus
Probab=99.88 E-value=9e-22 Score=137.45 Aligned_cols=87 Identities=34% Similarity=0.665 Sum_probs=81.2
Q ss_pred hCCCcEEEEEECCCChhhHhhHHHHHHHHHhCCCeEEEEEECCCCchhHHHHCCCCcccEEEEEeCCeEEEEEeCCCCHH
Q psy5680 72 RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTVIGFRNGDPVDMVVGNADQD 151 (201)
Q Consensus 72 ~~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~l~~~~~v~~~Pti~~~~~G~~v~~~~G~~~~~ 151 (201)
..+++++|+|||+|||+|+.+.|.+.+|+.+|+++.|+++|+|+. .++++.++|..+||+++|++|+.+.++.| .+.+
T Consensus 19 ~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde~-~~~~~~~~V~~~PTf~f~k~g~~~~~~vG-a~~~ 96 (106)
T KOG0907|consen 19 AGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDEL-EEVAKEFNVKAMPTFVFYKGGEEVDEVVG-ANKA 96 (106)
T ss_pred CCCCeEEEEEECCCCcchhhhhhHHHHHHHHCCCCEEEEEecccC-HhHHHhcCceEeeEEEEEECCEEEEEEec-CCHH
Confidence 556999999999999999999999999999999999999999997 99999999999999999999999999999 7777
Q ss_pred HHHHHHHHH
Q psy5680 152 VIQTLVSKL 160 (201)
Q Consensus 152 ~l~~~i~~~ 160 (201)
++.+.+.++
T Consensus 97 ~l~~~i~~~ 105 (106)
T KOG0907|consen 97 ELEKKIAKH 105 (106)
T ss_pred HHHHHHHhc
Confidence 888777653
No 14
>PRK09381 trxA thioredoxin; Provisional
Probab=99.88 E-value=2.3e-21 Score=136.52 Aligned_cols=102 Identities=20% Similarity=0.498 Sum_probs=95.7
Q ss_pred EEEeCCHhHHHHHH-hCCCcEEEEEECCCChhhHhhHHHHHHHHHhCCC-eEEEEEECCCCchhHHHHCCCCcccEEEEE
Q psy5680 58 YLIIEKIDDFKQTI-RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENGGGEIAREFEVQAVPTVIGF 135 (201)
Q Consensus 58 v~~l~~~~~~~~~~-~~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~-~~~~~vd~~~~~~~l~~~~~v~~~Pti~~~ 135 (201)
+.++ +.++|++.+ ..+++++|+||++||++|+.+.|.++++++.+++ +.++.+|++.. +.++++|++..+|++++|
T Consensus 5 v~~~-~~~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~-~~~~~~~~v~~~Pt~~~~ 82 (109)
T PRK09381 5 IIHL-TDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQN-PGTAPKYGIRGIPTLLLF 82 (109)
T ss_pred ceee-ChhhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCC-hhHHHhCCCCcCCEEEEE
Confidence 7888 889999876 7789999999999999999999999999999987 99999999999 999999999999999999
Q ss_pred eCCeEEEEEeCCCCHHHHHHHHHHHH
Q psy5680 136 RNGDPVDMVVGNADQDVIQTLVSKLS 161 (201)
Q Consensus 136 ~~G~~v~~~~G~~~~~~l~~~i~~~~ 161 (201)
++|+.+.++.|..+.+++..+|++++
T Consensus 83 ~~G~~~~~~~G~~~~~~l~~~i~~~~ 108 (109)
T PRK09381 83 KNGEVAATKVGALSKGQLKEFLDANL 108 (109)
T ss_pred eCCeEEEEecCCCCHHHHHHHHHHhc
Confidence 99999999999999999999998865
No 15
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.88 E-value=1.2e-21 Score=134.79 Aligned_cols=92 Identities=30% Similarity=0.547 Sum_probs=85.0
Q ss_pred HHHHHH--hCCCcEEEEEECCCChhhHhhHHHHHHHHHhCCC-eEEEEEECCCCchhHHHHCCCCcccEEEEEeCCeEEE
Q psy5680 66 DFKQTI--RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENGGGEIAREFEVQAVPTVIGFRNGDPVD 142 (201)
Q Consensus 66 ~~~~~~--~~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~-~~~~~vd~~~~~~~l~~~~~v~~~Pti~~~~~G~~v~ 142 (201)
+|++.+ +.+++++|+||++||++|+.+.|.++++++.+++ +.++.+|++++ ++++++|+|.++|++++|++|+.+.
T Consensus 2 ~f~~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~-~~l~~~~~i~~~Pt~~~~~~g~~~~ 80 (96)
T cd02956 2 NFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQ-PQIAQQFGVQALPTVYLFAAGQPVD 80 (96)
T ss_pred ChHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCC-HHHHHHcCCCCCCEEEEEeCCEEee
Confidence 566666 3478999999999999999999999999999987 99999999999 9999999999999999999999999
Q ss_pred EEeCCCCHHHHHHHHH
Q psy5680 143 MVVGNADQDVIQTLVS 158 (201)
Q Consensus 143 ~~~G~~~~~~l~~~i~ 158 (201)
++.|..+.++|..+|+
T Consensus 81 ~~~g~~~~~~l~~~l~ 96 (96)
T cd02956 81 GFQGAQPEEQLRQMLD 96 (96)
T ss_pred eecCCCCHHHHHHHhC
Confidence 9999999999998873
No 16
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.87 E-value=1.2e-21 Score=138.65 Aligned_cols=98 Identities=19% Similarity=0.331 Sum_probs=89.5
Q ss_pred EeCCHhHHHHHH---hCCCcEEEEEECCCChhhHhhHHHHHHHHHhCCC--eEEEEEECCCCchhHHHHCCCCcccEEEE
Q psy5680 60 IIEKIDDFKQTI---RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG--VEFVKINVENGGGEIAREFEVQAVPTVIG 134 (201)
Q Consensus 60 ~l~~~~~~~~~~---~~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~--~~~~~vd~~~~~~~l~~~~~v~~~Pti~~ 134 (201)
.+ +.++|.+.+ ..+++++|+|||+||++|+.+.|.++++++++++ +.++.+|++++ +.++++|+|.++||+++
T Consensus 8 ~~-~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~-~~l~~~~~V~~~Pt~~i 85 (111)
T cd02963 8 SL-TFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHE-RRLARKLGAHSVPAIVG 85 (111)
T ss_pred ee-eHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEecccc-HHHHHHcCCccCCEEEE
Confidence 34 778888655 4789999999999999999999999999999974 89999999999 99999999999999999
Q ss_pred EeCCeEEEEEeCCCCHHHHHHHHHH
Q psy5680 135 FRNGDPVDMVVGNADQDVIQTLVSK 159 (201)
Q Consensus 135 ~~~G~~v~~~~G~~~~~~l~~~i~~ 159 (201)
|++|+.+.++.|..+.+++.++|++
T Consensus 86 ~~~g~~~~~~~G~~~~~~l~~~i~~ 110 (111)
T cd02963 86 IINGQVTFYHDSSFTKQHVVDFVRK 110 (111)
T ss_pred EECCEEEEEecCCCCHHHHHHHHhc
Confidence 9999999999999999999999875
No 17
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.87 E-value=1.7e-21 Score=137.13 Aligned_cols=98 Identities=19% Similarity=0.382 Sum_probs=89.1
Q ss_pred EEEeCCHhHHHHHHhCCCcEEEEEECCCChhhHhhHHHHHHHHHhC----C---CeEEEEEECCCCchhHHHHCCCCccc
Q psy5680 58 YLIIEKIDDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETT----S---GVEFVKINVENGGGEIAREFEVQAVP 130 (201)
Q Consensus 58 v~~l~~~~~~~~~~~~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~----~---~~~~~~vd~~~~~~~l~~~~~v~~~P 130 (201)
+.++ +.++|++.+..+++++|.|||+||++|+.+.|.++++++.+ + .+.++.+|++++ ++++++|+|.++|
T Consensus 3 v~~l-~~~~f~~~i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~-~~l~~~~~v~~~P 80 (108)
T cd02996 3 IVSL-TSGNIDDILQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKE-SDIADRYRINKYP 80 (108)
T ss_pred eEEc-CHhhHHHHHhcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCC-HHHHHhCCCCcCC
Confidence 7889 99999998888899999999999999999999999998764 2 289999999999 9999999999999
Q ss_pred EEEEEeCCeE-EEEEeCCCCHHHHHHHH
Q psy5680 131 TVIGFRNGDP-VDMVVGNADQDVIQTLV 157 (201)
Q Consensus 131 ti~~~~~G~~-v~~~~G~~~~~~l~~~i 157 (201)
|+++|++|+. ...+.|..+.++|.+||
T Consensus 81 tl~~~~~g~~~~~~~~g~~~~~~l~~fi 108 (108)
T cd02996 81 TLKLFRNGMMMKREYRGQRSVEALAEFV 108 (108)
T ss_pred EEEEEeCCcCcceecCCCCCHHHHHhhC
Confidence 9999999984 46889999999998875
No 18
>PRK10996 thioredoxin 2; Provisional
Probab=99.87 E-value=3.8e-21 Score=141.34 Aligned_cols=102 Identities=27% Similarity=0.572 Sum_probs=95.9
Q ss_pred EEEeCCHhHHHHHHhCCCcEEEEEECCCChhhHhhHHHHHHHHHhCCC-eEEEEEECCCCchhHHHHCCCCcccEEEEEe
Q psy5680 58 YLIIEKIDDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENGGGEIAREFEVQAVPTVIGFR 136 (201)
Q Consensus 58 v~~l~~~~~~~~~~~~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~-~~~~~vd~~~~~~~l~~~~~v~~~Pti~~~~ 136 (201)
+.++ +.++|++.+.++++++|+||++||++|+.+.+.++++++++.+ +.++.+|++++ ++++++|+|.++|++++|+
T Consensus 37 ~i~~-~~~~~~~~i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~-~~l~~~~~V~~~Ptlii~~ 114 (139)
T PRK10996 37 VINA-TGETLDKLLQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAE-RELSARFRIRSIPTIMIFK 114 (139)
T ss_pred CEEc-CHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCC-HHHHHhcCCCccCEEEEEE
Confidence 6677 8999999888899999999999999999999999999999886 99999999999 9999999999999999999
Q ss_pred CCeEEEEEeCCCCHHHHHHHHHHHH
Q psy5680 137 NGDPVDMVVGNADQDVIQTLVSKLS 161 (201)
Q Consensus 137 ~G~~v~~~~G~~~~~~l~~~i~~~~ 161 (201)
+|+.+.++.|..+.+++.+||++++
T Consensus 115 ~G~~v~~~~G~~~~e~l~~~l~~~~ 139 (139)
T PRK10996 115 NGQVVDMLNGAVPKAPFDSWLNEAL 139 (139)
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHhC
Confidence 9999999999999999999998763
No 19
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.87 E-value=2e-21 Score=135.04 Aligned_cols=90 Identities=14% Similarity=0.266 Sum_probs=81.8
Q ss_pred HHHHHH--hCCCcEEEEEECCCChhhHhhHHHHHHHHHhCCCeEEEEEECC-CCchhHHHHCCCCcccEEEEEeCCeEEE
Q psy5680 66 DFKQTI--RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVE-NGGGEIAREFEVQAVPTVIGFRNGDPVD 142 (201)
Q Consensus 66 ~~~~~~--~~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~-~~~~~l~~~~~v~~~Pti~~~~~G~~v~ 142 (201)
++.+++ .++++++|.|||+||++|+.+.|.++++++.++++.++.+|.+ ++ ++++++|+|.++||+++|++| .+.
T Consensus 8 ~~~~~~~~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~~~~-~~l~~~~~V~~~PT~~lf~~g-~~~ 85 (100)
T cd02999 8 IALDLMAFNREDYTAVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEESSIK-PSLLSRYGVVGFPTILLFNST-PRV 85 (100)
T ss_pred HHHHHHHhcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhccCceEEEECCCCC-HHHHHhcCCeecCEEEEEcCC-cee
Confidence 344444 6899999999999999999999999999999988889999999 78 999999999999999999999 778
Q ss_pred EEeCCCCHHHHHHHH
Q psy5680 143 MVVGNADQDVIQTLV 157 (201)
Q Consensus 143 ~~~G~~~~~~l~~~i 157 (201)
++.|..+.++|.+||
T Consensus 86 ~~~G~~~~~~l~~f~ 100 (100)
T cd02999 86 RYNGTRTLDSLAAFY 100 (100)
T ss_pred EecCCCCHHHHHhhC
Confidence 999999999998875
No 20
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.87 E-value=4.8e-21 Score=133.01 Aligned_cols=97 Identities=18% Similarity=0.384 Sum_probs=87.9
Q ss_pred EEEeCCHhHHHHHHhCCCcEEEEEECCCChhhHhhHHHHHHHHHhCCC--eEEEEEECCCCchhHHHHCCCCcccEEEEE
Q psy5680 58 YLIIEKIDDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG--VEFVKINVENGGGEIAREFEVQAVPTVIGF 135 (201)
Q Consensus 58 v~~l~~~~~~~~~~~~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~--~~~~~vd~~~~~~~l~~~~~v~~~Pti~~~ 135 (201)
+.++ +.++|++.+. + .++|.|||+||++|+.+.|.++++++.+++ +.++.+|++++ +.++++|+|.++||+++|
T Consensus 3 v~~l-~~~~f~~~~~-~-~~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~-~~~~~~~~i~~~Pt~~~~ 78 (101)
T cd02994 3 VVEL-TDSNWTLVLE-G-EWMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQE-PGLSGRFFVTALPTIYHA 78 (101)
T ss_pred eEEc-ChhhHHHHhC-C-CEEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCC-HhHHHHcCCcccCEEEEe
Confidence 7889 8999999873 3 389999999999999999999999988764 89999999999 999999999999999999
Q ss_pred eCCeEEEEEeCCCCHHHHHHHHHH
Q psy5680 136 RNGDPVDMVVGNADQDVIQTLVSK 159 (201)
Q Consensus 136 ~~G~~v~~~~G~~~~~~l~~~i~~ 159 (201)
++|+. .++.|..+.++|..||++
T Consensus 79 ~~g~~-~~~~G~~~~~~l~~~i~~ 101 (101)
T cd02994 79 KDGVF-RRYQGPRDKEDLISFIEE 101 (101)
T ss_pred CCCCE-EEecCCCCHHHHHHHHhC
Confidence 99974 789999999999998863
No 21
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.86 E-value=1.1e-20 Score=134.04 Aligned_cols=89 Identities=25% Similarity=0.523 Sum_probs=84.2
Q ss_pred EEEeCCHhHHHHHHhCCCcEEEEEECCCChhhHhhHHHHHHHHHhCCCeEEEEEECCCCchhHHHHCCCCcccEEEEEeC
Q psy5680 58 YLIIEKIDDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTVIGFRN 137 (201)
Q Consensus 58 v~~l~~~~~~~~~~~~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~l~~~~~v~~~Pti~~~~~ 137 (201)
+.+|++.++|.+.+.++++++|+||++||++|+.+.|.+++++++++++.|+.||++++ ++++++|+|..+||+++|++
T Consensus 6 v~~i~~~~~~~~~i~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~-~~l~~~~~v~~vPt~l~fk~ 84 (113)
T cd02989 6 YREVSDEKEFFEIVKSSERVVCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAEKA-PFLVEKLNIKVLPTVILFKN 84 (113)
T ss_pred eEEeCCHHHHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEcccC-HHHHHHCCCccCCEEEEEEC
Confidence 78896779999999888999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred CeEEEEEeCC
Q psy5680 138 GDPVDMVVGN 147 (201)
Q Consensus 138 G~~v~~~~G~ 147 (201)
|+.+.++.|.
T Consensus 85 G~~v~~~~g~ 94 (113)
T cd02989 85 GKTVDRIVGF 94 (113)
T ss_pred CEEEEEEECc
Confidence 9999888774
No 22
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.86 E-value=3.7e-21 Score=135.23 Aligned_cols=98 Identities=22% Similarity=0.484 Sum_probs=90.0
Q ss_pred EEEeCCHhHHHHHH-hCCCcEEEEEECCCChhhHhhHHHHHHHHHhCCC-eEEEEEECCC--CchhHHHHCCCCcccEEE
Q psy5680 58 YLIIEKIDDFKQTI-RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVEN--GGGEIAREFEVQAVPTVI 133 (201)
Q Consensus 58 v~~l~~~~~~~~~~-~~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~-~~~~~vd~~~--~~~~l~~~~~v~~~Pti~ 133 (201)
+.++ +.++|++.+ ..+++++|.||++||++|+.+.|.++++++.+++ +.++.+|++. + ++++++|+|.++|+++
T Consensus 2 v~~l-~~~~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~-~~~~~~~~i~~~Pt~~ 79 (109)
T cd03002 2 VYEL-TPKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKN-KPLCGKYGVQGFPTLK 79 (109)
T ss_pred eEEc-chhhHHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCcccc-HHHHHHcCCCcCCEEE
Confidence 6788 999999998 6788899999999999999999999999999987 8999999998 7 8999999999999999
Q ss_pred EEeCCe-----EEEEEeCCCCHHHHHHHH
Q psy5680 134 GFRNGD-----PVDMVVGNADQDVIQTLV 157 (201)
Q Consensus 134 ~~~~G~-----~v~~~~G~~~~~~l~~~i 157 (201)
+|++|+ ....+.|..+.++|.+||
T Consensus 80 ~~~~~~~~~~~~~~~~~G~~~~~~l~~fi 108 (109)
T cd03002 80 VFRPPKKASKHAVEDYNGERSAKAIVDFV 108 (109)
T ss_pred EEeCCCcccccccccccCccCHHHHHHHh
Confidence 998886 456889999999999987
No 23
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.86 E-value=9.6e-21 Score=131.40 Aligned_cols=97 Identities=30% Similarity=0.596 Sum_probs=88.6
Q ss_pred EEEeCCHhHHHHHHhCCCcEEEEEECCCChhhHhhHHHHHHHHHhCCC----eEEEEEECCCCchhHHHHCCCCcccEEE
Q psy5680 58 YLIIEKIDDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG----VEFVKINVENGGGEIAREFEVQAVPTVI 133 (201)
Q Consensus 58 v~~l~~~~~~~~~~~~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~----~~~~~vd~~~~~~~l~~~~~v~~~Pti~ 133 (201)
+.++ +.++|++.+..+ +++|.||++||++|+.+.|.++++++++.+ +.++.+|++++ +.++++|+|.++||++
T Consensus 2 ~~~l-~~~~f~~~~~~~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~-~~~~~~~~v~~~Pt~~ 78 (102)
T cd03005 2 VLEL-TEDNFDHHIAEG-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQH-RELCSEFQVRGYPTLL 78 (102)
T ss_pred eeEC-CHHHHHHHhhcC-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCC-hhhHhhcCCCcCCEEE
Confidence 6788 899999999544 699999999999999999999999988853 89999999999 9999999999999999
Q ss_pred EEeCCeEEEEEeCCCCHHHHHHHH
Q psy5680 134 GFRNGDPVDMVVGNADQDVIQTLV 157 (201)
Q Consensus 134 ~~~~G~~v~~~~G~~~~~~l~~~i 157 (201)
+|++|+.+.++.|..+.++|.+||
T Consensus 79 ~~~~g~~~~~~~G~~~~~~l~~~i 102 (102)
T cd03005 79 LFKDGEKVDKYKGTRDLDSLKEFV 102 (102)
T ss_pred EEeCCCeeeEeeCCCCHHHHHhhC
Confidence 999999888999999999988775
No 24
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.86 E-value=8.6e-21 Score=132.80 Aligned_cols=95 Identities=13% Similarity=0.186 Sum_probs=90.2
Q ss_pred EEEeCCHhHHHHHHhCCCcEEEEEECCC--ChhhHhhHHHHHHHHHhCCC-eEEEEEECCCCchhHHHHCCCCcccEEEE
Q psy5680 58 YLIIEKIDDFKQTIRGRNPVLAYFFKPS--CGFCKQLEPKISTVSETTSG-VEFVKINVENGGGEIAREFEVQAVPTVIG 134 (201)
Q Consensus 58 v~~l~~~~~~~~~~~~~~~vvv~f~a~w--C~~C~~~~~~l~~l~~~~~~-~~~~~vd~~~~~~~l~~~~~v~~~Pti~~ 134 (201)
+.++ +..+|++.++.+++++|.||++| ||+|+.+.|.+++++++|++ +.|+.+|++++ ++++.+|+|.++||+++
T Consensus 12 ~~~~-~~~~~~~~~~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~-~~la~~f~V~sIPTli~ 89 (111)
T cd02965 12 WPRV-DAATLDDWLAAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADE-QALAARFGVLRTPALLF 89 (111)
T ss_pred Cccc-ccccHHHHHhCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCC-HHHHHHcCCCcCCEEEE
Confidence 6778 99999988888999999999997 99999999999999999998 89999999999 99999999999999999
Q ss_pred EeCCeEEEEEeCCCCHHHHH
Q psy5680 135 FRNGDPVDMVVGNADQDVIQ 154 (201)
Q Consensus 135 ~~~G~~v~~~~G~~~~~~l~ 154 (201)
|++|+.+.++.|..+.+++.
T Consensus 90 fkdGk~v~~~~G~~~~~e~~ 109 (111)
T cd02965 90 FRDGRYVGVLAGIRDWDEYV 109 (111)
T ss_pred EECCEEEEEEeCccCHHHHh
Confidence 99999999999988888875
No 25
>PTZ00051 thioredoxin; Provisional
Probab=99.85 E-value=2.1e-20 Score=128.96 Aligned_cols=96 Identities=27% Similarity=0.540 Sum_probs=88.7
Q ss_pred EEEeCCHhHHHHHHhCCCcEEEEEECCCChhhHhhHHHHHHHHHhCCCeEEEEEECCCCchhHHHHCCCCcccEEEEEeC
Q psy5680 58 YLIIEKIDDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTVIGFRN 137 (201)
Q Consensus 58 v~~l~~~~~~~~~~~~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~l~~~~~v~~~Pti~~~~~ 137 (201)
+.++++.++|.+.+..+++++++||++||++|+.+.+.+++++++++++.++.+|++++ +.++++|++.++||+++|++
T Consensus 2 v~~i~~~~~~~~~~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~-~~~~~~~~v~~~Pt~~~~~~ 80 (98)
T PTZ00051 2 VHIVTSQAEFESTLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDEL-SEVAEKENITSMPTFKVFKN 80 (98)
T ss_pred eEEecCHHHHHHHHhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcch-HHHHHHCCCceeeEEEEEeC
Confidence 67787888999999889999999999999999999999999999998899999999999 99999999999999999999
Q ss_pred CeEEEEEeCCCCHHHHHH
Q psy5680 138 GDPVDMVVGNADQDVIQT 155 (201)
Q Consensus 138 G~~v~~~~G~~~~~~l~~ 155 (201)
|+.+.++.| ...++|.+
T Consensus 81 g~~~~~~~G-~~~~~~~~ 97 (98)
T PTZ00051 81 GSVVDTLLG-ANDEALKQ 97 (98)
T ss_pred CeEEEEEeC-CCHHHhhc
Confidence 999999999 57676653
No 26
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.85 E-value=2.3e-20 Score=129.84 Aligned_cols=98 Identities=22% Similarity=0.509 Sum_probs=90.3
Q ss_pred EEEeCCHhHHHHHHhCCCcEEEEEECCCChhhHhhHHHHHHHHHhCC--C-eEEEEEECCC--CchhHHHHCCCCcccEE
Q psy5680 58 YLIIEKIDDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTS--G-VEFVKINVEN--GGGEIAREFEVQAVPTV 132 (201)
Q Consensus 58 v~~l~~~~~~~~~~~~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~--~-~~~~~vd~~~--~~~~l~~~~~v~~~Pti 132 (201)
+.++ +..+|+..+.++++++|.||++||++|+.+.|.++++++.++ + +.++.+|++. + +.++++|+|.++|++
T Consensus 2 ~~~l-~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~-~~~~~~~~i~~~Pt~ 79 (104)
T cd02997 2 VVHL-TDEDFRKFLKKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEH-DALKEEYNVKGFPTF 79 (104)
T ss_pred eEEe-chHhHHHHHhhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCcc-HHHHHhCCCccccEE
Confidence 6788 888999999778899999999999999999999999998886 4 8899999998 8 999999999999999
Q ss_pred EEEeCCeEEEEEeCCCCHHHHHHHH
Q psy5680 133 IGFRNGDPVDMVVGNADQDVIQTLV 157 (201)
Q Consensus 133 ~~~~~G~~v~~~~G~~~~~~l~~~i 157 (201)
++|++|+.+.++.|..+.+++.+||
T Consensus 80 ~~~~~g~~~~~~~g~~~~~~l~~~l 104 (104)
T cd02997 80 KYFENGKFVEKYEGERTAEDIIEFM 104 (104)
T ss_pred EEEeCCCeeEEeCCCCCHHHHHhhC
Confidence 9999999889999999999998875
No 27
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.85 E-value=3.7e-20 Score=145.52 Aligned_cols=106 Identities=16% Similarity=0.413 Sum_probs=98.0
Q ss_pred EEEeCCHhHHHHHH-h----CCCcEEEEEECCCChhhHhhHHHHHHHHHhCCC-eEEEEEECCCCchhHHHHCCCCcccE
Q psy5680 58 YLIIEKIDDFKQTI-R----GRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENGGGEIAREFEVQAVPT 131 (201)
Q Consensus 58 v~~l~~~~~~~~~~-~----~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~-~~~~~vd~~~~~~~l~~~~~v~~~Pt 131 (201)
+.++ +.++|++.+ . .+++++|+|||+||++|+.+.|.|+++++++++ +.++.+|++++ ++++++|+|.++||
T Consensus 32 Vv~L-t~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~-~~l~~~~~I~~~PT 109 (224)
T PTZ00443 32 LVLL-NDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRA-LNLAKRFAIKGYPT 109 (224)
T ss_pred cEEC-CHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCccc-HHHHHHcCCCcCCE
Confidence 8999 999999987 2 258999999999999999999999999999998 99999999999 99999999999999
Q ss_pred EEEEeCCeEEEEEeCCCCHHHHHHHHHHHHhhhh
Q psy5680 132 VIGFRNGDPVDMVVGNADQDVIQTLVSKLSQKLA 165 (201)
Q Consensus 132 i~~~~~G~~v~~~~G~~~~~~l~~~i~~~~~~~~ 165 (201)
+++|++|+.+....|..+.+++.+|+.+......
T Consensus 110 l~~f~~G~~v~~~~G~~s~e~L~~fi~~~~~~~~ 143 (224)
T PTZ00443 110 LLLFDKGKMYQYEGGDRSTEKLAAFALGDFKKAL 143 (224)
T ss_pred EEEEECCEEEEeeCCCCCHHHHHHHHHHHHHhhc
Confidence 9999999988888898999999999999886553
No 28
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.84 E-value=3.8e-20 Score=128.60 Aligned_cols=98 Identities=20% Similarity=0.441 Sum_probs=89.5
Q ss_pred EEEeCCHhHHHHHH-hCCCcEEEEEECCCChhhHhhHHHHHHHHHhCCC-eEEEEEECCCCchhHHHHCCCCcccEEEEE
Q psy5680 58 YLIIEKIDDFKQTI-RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENGGGEIAREFEVQAVPTVIGF 135 (201)
Q Consensus 58 v~~l~~~~~~~~~~-~~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~-~~~~~vd~~~~~~~l~~~~~v~~~Pti~~~ 135 (201)
+.++ +.++|++.+ ..+++++|+||++||++|+.+.|.+.++++.+++ +.++.+|++++ ++++++|+|.++|++++|
T Consensus 2 v~~l-~~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~i~~~P~~~~~ 79 (103)
T cd03001 2 VVEL-TDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVH-QSLAQQYGVRGFPTIKVF 79 (103)
T ss_pred eEEc-CHHhHHHHHhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcch-HHHHHHCCCCccCEEEEE
Confidence 6788 999999998 5667799999999999999999999999999887 99999999999 999999999999999999
Q ss_pred eCC-eEEEEEeCCCCHHHHHHHH
Q psy5680 136 RNG-DPVDMVVGNADQDVIQTLV 157 (201)
Q Consensus 136 ~~G-~~v~~~~G~~~~~~l~~~i 157 (201)
++| +....+.|..+.++|.+|+
T Consensus 80 ~~~~~~~~~~~g~~~~~~l~~~~ 102 (103)
T cd03001 80 GAGKNSPQDYQGGRTAKAIVSAA 102 (103)
T ss_pred CCCCcceeecCCCCCHHHHHHHh
Confidence 888 4456899999999999886
No 29
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.84 E-value=7.1e-20 Score=128.17 Aligned_cols=97 Identities=19% Similarity=0.291 Sum_probs=84.7
Q ss_pred HhHHHHHH--hCCCcEEEEEECCCChhhHhhHHHHHHHHHhCCC-eEEEEEECCCCchhHHHHCCCCcccEEEEEeCCeE
Q psy5680 64 IDDFKQTI--RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENGGGEIAREFEVQAVPTVIGFRNGDP 140 (201)
Q Consensus 64 ~~~~~~~~--~~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~-~~~~~vd~~~~~~~l~~~~~v~~~Pti~~~~~G~~ 140 (201)
.+++++.+ .++++|+|.|+|+||++|+.+.|.++++++++++ +.|+.||+|+. +++++.|+|...||+++|++|+.
T Consensus 2 ~~~~d~~i~~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev-~dva~~y~I~amPtfvffkngkh 80 (114)
T cd02986 2 KKEVDQAIKSTAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKV-PVYTQYFDISYIPSTIFFFNGQH 80 (114)
T ss_pred HHHHHHHHHhcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEecccc-HHHHHhcCceeCcEEEEEECCcE
Confidence 46788877 4699999999999999999999999999999999 99999999999 99999999999999999999998
Q ss_pred EEEEeC---------C-CCHHHHHHHHHHHH
Q psy5680 141 VDMVVG---------N-ADQDVIQTLVSKLS 161 (201)
Q Consensus 141 v~~~~G---------~-~~~~~l~~~i~~~~ 161 (201)
+..-.| . .+.++++..++...
T Consensus 81 ~~~d~gt~~~~k~~~~~~~k~~~idi~e~~y 111 (114)
T cd02986 81 MKVDYGSPDHTKFVGSFKTKQDFIDLIEVIY 111 (114)
T ss_pred EEEecCCCCCcEEEEEcCchhHHHHHHHHHH
Confidence 754333 2 35688888877654
No 30
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.84 E-value=6.4e-20 Score=126.57 Aligned_cols=98 Identities=34% Similarity=0.674 Sum_probs=90.4
Q ss_pred CHhHHHHHH-hCCCcEEEEEECCCChhhHhhHHHHHHHHHhCCC-eEEEEEECCCCchhHHHHCCCCcccEEEEEeCCeE
Q psy5680 63 KIDDFKQTI-RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENGGGEIAREFEVQAVPTVIGFRNGDP 140 (201)
Q Consensus 63 ~~~~~~~~~-~~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~-~~~~~vd~~~~~~~l~~~~~v~~~Pti~~~~~G~~ 140 (201)
+.++|.+.+ ..+++++|+||++||++|+.+.+.++++++.+++ +.|+.+|++++ +.++++|++..+|++++|++|+.
T Consensus 2 ~~~~~~~~~~~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~-~~~~~~~~v~~~P~~~~~~~g~~ 80 (101)
T TIGR01068 2 TDANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDEN-PDIAAKYGIRSIPTLLLFKNGKE 80 (101)
T ss_pred CHHHHHHHHhhcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCC-HHHHHHcCCCcCCEEEEEeCCcE
Confidence 577888888 5567999999999999999999999999999986 99999999999 99999999999999999999999
Q ss_pred EEEEeCCCCHHHHHHHHHHHH
Q psy5680 141 VDMVVGNADQDVIQTLVSKLS 161 (201)
Q Consensus 141 v~~~~G~~~~~~l~~~i~~~~ 161 (201)
+..+.|..+.+++.++|++++
T Consensus 81 ~~~~~g~~~~~~l~~~l~~~~ 101 (101)
T TIGR01068 81 VDRSVGALPKAALKQLINKNL 101 (101)
T ss_pred eeeecCCCCHHHHHHHHHhhC
Confidence 999999999999999998753
No 31
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.83 E-value=1.1e-19 Score=134.95 Aligned_cols=87 Identities=22% Similarity=0.327 Sum_probs=81.0
Q ss_pred EEEeCCHhHHHHHH--hCCCcEEEEEECCCChhhHhhHHHHHHHHHhCCC--eEEEEEECCCCchhHHHHCCCCc-----
Q psy5680 58 YLIIEKIDDFKQTI--RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG--VEFVKINVENGGGEIAREFEVQA----- 128 (201)
Q Consensus 58 v~~l~~~~~~~~~~--~~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~--~~~~~vd~~~~~~~l~~~~~v~~----- 128 (201)
+.++ +.++|++.+ ..+++++|+||++||++|+.+.|.++++++++++ +.|+.||++++ ++++++|+|.+
T Consensus 30 v~~l-~~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~-~~la~~~~V~~~~~v~ 107 (152)
T cd02962 30 IKYF-TPKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRF-PNVAEKFRVSTSPLSK 107 (152)
T ss_pred cEEc-CHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCC-HHHHHHcCceecCCcC
Confidence 8889 889999988 4467999999999999999999999999999874 99999999999 99999999988
Q ss_pred -ccEEEEEeCCeEEEEEeC
Q psy5680 129 -VPTVIGFRNGDPVDMVVG 146 (201)
Q Consensus 129 -~Pti~~~~~G~~v~~~~G 146 (201)
+||+++|++|+++.++.|
T Consensus 108 ~~PT~ilf~~Gk~v~r~~G 126 (152)
T cd02962 108 QLPTIILFQGGKEVARRPY 126 (152)
T ss_pred CCCEEEEEECCEEEEEEec
Confidence 999999999999999886
No 32
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.83 E-value=6e-20 Score=127.14 Aligned_cols=97 Identities=25% Similarity=0.497 Sum_probs=90.1
Q ss_pred CHhHHHHHHhCCCcEEEEEECCCChhhHhhHHHHHHHHHhCCC---eEEEEEECCCCchhHHHHCCCCcccEEEEEeCCe
Q psy5680 63 KIDDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG---VEFVKINVENGGGEIAREFEVQAVPTVIGFRNGD 139 (201)
Q Consensus 63 ~~~~~~~~~~~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~---~~~~~vd~~~~~~~l~~~~~v~~~Pti~~~~~G~ 139 (201)
++++|++.+.++++++|+||++||++|+.+.+.++++++.+.+ +.++.+|++++ +.++++|+|.++|++++|++|+
T Consensus 2 ~~~~~~~~~~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~~i~~~P~~~~~~~~~ 80 (102)
T TIGR01126 2 TASNFDDIVLSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAE-KDLASRFGVSGFPTIKFFPKGK 80 (102)
T ss_pred chhhHHHHhccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccch-HHHHHhCCCCcCCEEEEecCCC
Confidence 6788999888899999999999999999999999999999875 99999999999 9999999999999999998887
Q ss_pred EEEEEeCCCCHHHHHHHHHHH
Q psy5680 140 PVDMVVGNADQDVIQTLVSKL 160 (201)
Q Consensus 140 ~v~~~~G~~~~~~l~~~i~~~ 160 (201)
.+..+.|..+.++|..||+++
T Consensus 81 ~~~~~~g~~~~~~l~~~i~~~ 101 (102)
T TIGR01126 81 KPVDYEGGRDLEAIVEFVNEK 101 (102)
T ss_pred cceeecCCCCHHHHHHHHHhc
Confidence 677899999999999999875
No 33
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.83 E-value=1.2e-19 Score=133.81 Aligned_cols=102 Identities=19% Similarity=0.377 Sum_probs=89.8
Q ss_pred CHhHHHHHHhCCCcEEEEEECCCChhhHhhHHHHHHHHHhCCC-eEEEEEECCCC-chhHHHHCCCCcccEEEEE-eCCe
Q psy5680 63 KIDDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENG-GGEIAREFEVQAVPTVIGF-RNGD 139 (201)
Q Consensus 63 ~~~~~~~~~~~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~-~~~~~vd~~~~-~~~l~~~~~v~~~Pti~~~-~~G~ 139 (201)
+..+|+.++.++++++|+|||+||++|+.+.|.+.++++.+.+ +.|+.||++.. ..+++++|+|.++|++++| ++|+
T Consensus 9 ~~~~~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G~ 88 (142)
T cd02950 9 SSTPPEVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREGN 88 (142)
T ss_pred ccCCHHHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCCC
Confidence 3456777778899999999999999999999999999999976 88888888754 1578999999999999999 5899
Q ss_pred EEEEEeCCCCHHHHHHHHHHHHhhh
Q psy5680 140 PVDMVVGNADQDVIQTLVSKLSQKL 164 (201)
Q Consensus 140 ~v~~~~G~~~~~~l~~~i~~~~~~~ 164 (201)
++.++.|..+.++|.++|+++++..
T Consensus 89 ~v~~~~G~~~~~~l~~~l~~l~~~~ 113 (142)
T cd02950 89 EEGQSIGLQPKQVLAQNLDALVAGE 113 (142)
T ss_pred EEEEEeCCCCHHHHHHHHHHHHcCC
Confidence 9999999999999999999988543
No 34
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.83 E-value=4.8e-20 Score=130.82 Aligned_cols=87 Identities=24% Similarity=0.517 Sum_probs=80.4
Q ss_pred EEEeCCHhHHHHHH-hC--CCcEEEEEECCCChhhHhhHHHHHHHHHhCCCeEEEEEECCCCchhHHHHCCCCcccEEEE
Q psy5680 58 YLIIEKIDDFKQTI-RG--RNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTVIG 134 (201)
Q Consensus 58 v~~l~~~~~~~~~~-~~--~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~l~~~~~v~~~Pti~~ 134 (201)
+.++ +.++|.+.+ .. +++++|+||++||++|+.+.|.+++++++++++.|+.+|++++ +++++|+|.++||+++
T Consensus 6 v~~i-~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~--~l~~~~~i~~~Pt~~~ 82 (113)
T cd02957 6 VREI-SSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAEKA--FLVNYLDIKVLPTLLV 82 (113)
T ss_pred EEEE-cHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchhh--HHHHhcCCCcCCEEEE
Confidence 8899 779999998 33 4899999999999999999999999999998899999999986 8999999999999999
Q ss_pred EeCCeEEEEEeCC
Q psy5680 135 FRNGDPVDMVVGN 147 (201)
Q Consensus 135 ~~~G~~v~~~~G~ 147 (201)
|++|+.+.++.|.
T Consensus 83 f~~G~~v~~~~G~ 95 (113)
T cd02957 83 YKNGELIDNIVGF 95 (113)
T ss_pred EECCEEEEEEecH
Confidence 9999999999883
No 35
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.83 E-value=1.6e-19 Score=124.20 Aligned_cols=93 Identities=31% Similarity=0.528 Sum_probs=83.5
Q ss_pred CHhHHHHHHhC--CCcEEEEEECCCChhhHhhHHHHHHHHHhC-CCeEEEEEECCCCchhHHHHCCCCcccEEEEEeCCe
Q psy5680 63 KIDDFKQTIRG--RNPVLAYFFKPSCGFCKQLEPKISTVSETT-SGVEFVKINVENGGGEIAREFEVQAVPTVIGFRNGD 139 (201)
Q Consensus 63 ~~~~~~~~~~~--~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~-~~~~~~~vd~~~~~~~l~~~~~v~~~Pti~~~~~G~ 139 (201)
+.++|++.+.. +++++|+||++||++|+.+.+.++++++++ +++.++.+|+++. ++++++|++.++||+++|++|+
T Consensus 1 s~~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~-~~~~~~~~i~~~Pt~~~~~~g~ 79 (97)
T cd02984 1 SEEEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEEL-PEISEKFEITAVPTFVFFRNGT 79 (97)
T ss_pred CHHHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccC-HHHHHhcCCccccEEEEEECCE
Confidence 46788888833 599999999999999999999999999995 4499999999999 9999999999999999999999
Q ss_pred EEEEEeCCCCHHHHHHHH
Q psy5680 140 PVDMVVGNADQDVIQTLV 157 (201)
Q Consensus 140 ~v~~~~G~~~~~~l~~~i 157 (201)
.+.++.| .+.++|.+.|
T Consensus 80 ~~~~~~g-~~~~~l~~~~ 96 (97)
T cd02984 80 IVDRVSG-ADPKELAKKV 96 (97)
T ss_pred EEEEEeC-CCHHHHHHhh
Confidence 9999999 6778877765
No 36
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.82 E-value=1e-19 Score=126.52 Aligned_cols=97 Identities=25% Similarity=0.501 Sum_probs=87.8
Q ss_pred EEEeCCHhHHHHHH-hCCCcEEEEEECCCChhhHhhHHHHHHHHHhCCC---eEEEEEECCCCchhHHHHCCCCcccEEE
Q psy5680 58 YLIIEKIDDFKQTI-RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG---VEFVKINVENGGGEIAREFEVQAVPTVI 133 (201)
Q Consensus 58 v~~l~~~~~~~~~~-~~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~---~~~~~vd~~~~~~~l~~~~~v~~~Pti~ 133 (201)
+.++ +.++|++.+ ..+++++|+||++||++|+.+.|.+.++++.+++ +.++.+|++++ +++..+++.++|+++
T Consensus 2 v~~l-~~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~--~~~~~~~~~~~Pt~~ 78 (104)
T cd02995 2 VKVV-VGKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN--DVPSEFVVDGFPTIL 78 (104)
T ss_pred eEEE-chhhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch--hhhhhccCCCCCEEE
Confidence 7889 999999998 6679999999999999999999999999999865 89999999987 578899999999999
Q ss_pred EEeCCe--EEEEEeCCCCHHHHHHHH
Q psy5680 134 GFRNGD--PVDMVVGNADQDVIQTLV 157 (201)
Q Consensus 134 ~~~~G~--~v~~~~G~~~~~~l~~~i 157 (201)
+|++|+ ...++.|..+.++|.+||
T Consensus 79 ~~~~~~~~~~~~~~g~~~~~~l~~fi 104 (104)
T cd02995 79 FFPAGDKSNPIKYEGDRTLEDLIKFI 104 (104)
T ss_pred EEcCCCcCCceEccCCcCHHHHHhhC
Confidence 998887 566899999999998875
No 37
>KOG0908|consensus
Probab=99.82 E-value=8.7e-20 Score=141.67 Aligned_cols=111 Identities=30% Similarity=0.502 Sum_probs=102.3
Q ss_pred ceEEEeCCHhHHHHHH--hCCCcEEEEEECCCChhhHhhHHHHHHHHHhCCCeEEEEEECCCCchhHHHHCCCCcccEEE
Q psy5680 56 MAYLIIEKIDDFKQTI--RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTVI 133 (201)
Q Consensus 56 ~~v~~l~~~~~~~~~~--~~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~l~~~~~v~~~Pti~ 133 (201)
|+|..++++.+|+..+ +..+.++|+|+|+||++|+...|.+..++.+|++..|++||+|+. +..+..+||...||++
T Consensus 1 m~Vi~v~~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~aVFlkVdVd~c-~~taa~~gV~amPTFi 79 (288)
T KOG0908|consen 1 MPVIVVNSDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPGAVFLKVDVDEC-RGTAATNGVNAMPTFI 79 (288)
T ss_pred CCeEEecCcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCcccEEEEEeHHHh-hchhhhcCcccCceEE
Confidence 4588888899999998 566799999999999999999999999999999999999999999 9999999999999999
Q ss_pred EEeCCeEEEEEeCCCCHHHHHHHHHHHHhhhhhcc
Q psy5680 134 GFRNGDPVDMVVGNADQDVIQTLVSKLSQKLATHY 168 (201)
Q Consensus 134 ~~~~G~~v~~~~G~~~~~~l~~~i~~~~~~~~~~~ 168 (201)
+|++|..+.++.| .+...|+..+.++........
T Consensus 80 ff~ng~kid~~qG-Ad~~gLe~kv~~~~stsaa~~ 113 (288)
T KOG0908|consen 80 FFRNGVKIDQIQG-ADASGLEEKVAKYASTSAASS 113 (288)
T ss_pred EEecCeEeeeecC-CCHHHHHHHHHHHhccCcccc
Confidence 9999999999999 999999999999987655433
No 38
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.81 E-value=2.5e-19 Score=124.67 Aligned_cols=98 Identities=22% Similarity=0.484 Sum_probs=88.1
Q ss_pred EEEeCCHhHHHHHH-hCCCcEEEEEECCCChhhHhhHHHHHHHHHhCC--C-eEEEEEECCC-CchhHHHHCCCCcccEE
Q psy5680 58 YLIIEKIDDFKQTI-RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTS--G-VEFVKINVEN-GGGEIAREFEVQAVPTV 132 (201)
Q Consensus 58 v~~l~~~~~~~~~~-~~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~--~-~~~~~vd~~~-~~~~l~~~~~v~~~Pti 132 (201)
+.++ +.++|+..+ +.+++++|+||++||++|+.+.+.+.++++.++ + +.++.+|++. + ++++++|+|.++|++
T Consensus 2 ~~~l-~~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~-~~~~~~~~i~~~P~~ 79 (105)
T cd02998 2 VVEL-TDSNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEAN-KDLAKKYGVSGFPTL 79 (105)
T ss_pred eEEc-chhcHHHHhcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcc-hhhHHhCCCCCcCEE
Confidence 6788 889999988 566799999999999999999999999999986 3 9999999999 8 999999999999999
Q ss_pred EEEeCC-eEEEEEeCCCCHHHHHHHH
Q psy5680 133 IGFRNG-DPVDMVVGNADQDVIQTLV 157 (201)
Q Consensus 133 ~~~~~G-~~v~~~~G~~~~~~l~~~i 157 (201)
++|.+| +....+.|..+.++|.+||
T Consensus 80 ~~~~~~~~~~~~~~g~~~~~~l~~~i 105 (105)
T cd02998 80 KFFPKGSTEPVKYEGGRDLEDLVKFV 105 (105)
T ss_pred EEEeCCCCCccccCCccCHHHHHhhC
Confidence 999766 5666889999999998875
No 39
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.81 E-value=6.5e-19 Score=121.57 Aligned_cols=91 Identities=24% Similarity=0.514 Sum_probs=83.8
Q ss_pred HHHHH-hCCCcEEEEEECCCChhhHhhHHHHHHHHHhCCC-eEEEEEECCCCchhHHHHCCCCcccEEEEEeCCeEEEEE
Q psy5680 67 FKQTI-RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENGGGEIAREFEVQAVPTVIGFRNGDPVDMV 144 (201)
Q Consensus 67 ~~~~~-~~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~-~~~~~vd~~~~~~~l~~~~~v~~~Pti~~~~~G~~v~~~ 144 (201)
++..+ ..+++++++||++||+.|+.+.+.++++++++++ +.++.+|+++. ++++++++|.++|++++|++|+++.++
T Consensus 5 ~~~~~~~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~-~~l~~~~~v~~vPt~~i~~~g~~v~~~ 83 (97)
T cd02949 5 LRKLYHESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDED-QEIAEAAGIMGTPTVQFFKDKELVKEI 83 (97)
T ss_pred HHHHHHhCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCC-HHHHHHCCCeeccEEEEEECCeEEEEE
Confidence 44455 6889999999999999999999999999999986 99999999999 999999999999999999999999999
Q ss_pred eCCCCHHHHHHHHH
Q psy5680 145 VGNADQDVIQTLVS 158 (201)
Q Consensus 145 ~G~~~~~~l~~~i~ 158 (201)
.|..+.+++.++++
T Consensus 84 ~g~~~~~~~~~~l~ 97 (97)
T cd02949 84 SGVKMKSEYREFIE 97 (97)
T ss_pred eCCccHHHHHHhhC
Confidence 99999999888863
No 40
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.81 E-value=3.7e-19 Score=125.45 Aligned_cols=98 Identities=21% Similarity=0.435 Sum_probs=85.5
Q ss_pred EEEeCCHhHHHHHH---hCCCcEEEEEECCCChhhHhhHHHHHHHHHhCCC--eEEEEEECCC-CchhHHH-HCCCCccc
Q psy5680 58 YLIIEKIDDFKQTI---RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG--VEFVKINVEN-GGGEIAR-EFEVQAVP 130 (201)
Q Consensus 58 v~~l~~~~~~~~~~---~~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~--~~~~~vd~~~-~~~~l~~-~~~v~~~P 130 (201)
++++ +.++|+..+ .++++++|.||++||++|+.+.|.+.++++.+++ +.++.+|++. . ..++. .|++..+|
T Consensus 3 v~~~-~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~-~~~~~~~~~v~~~P 80 (109)
T cd02993 3 VVTL-SRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQ-REFAKEELQLKSFP 80 (109)
T ss_pred ceec-cHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccc-hhhHHhhcCCCcCC
Confidence 7888 899999887 4679999999999999999999999999999975 8999999997 5 67776 59999999
Q ss_pred EEEEEeCC-eEEEEEeCC-CCHHHHHHHH
Q psy5680 131 TVIGFRNG-DPVDMVVGN-ADQDVIQTLV 157 (201)
Q Consensus 131 ti~~~~~G-~~v~~~~G~-~~~~~l~~~i 157 (201)
|+++|++| .....|.|. .+.+.|..||
T Consensus 81 ti~~f~~~~~~~~~y~g~~~~~~~l~~f~ 109 (109)
T cd02993 81 TILFFPKNSRQPIKYPSEQRDVDSLLMFV 109 (109)
T ss_pred EEEEEcCCCCCceeccCCCCCHHHHHhhC
Confidence 99999665 456789884 7999988875
No 41
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.80 E-value=1.8e-19 Score=125.82 Aligned_cols=94 Identities=17% Similarity=0.208 Sum_probs=83.1
Q ss_pred hHHHHHHhCCCcEEEEEECCCChhhHhhHHHH---HHHHHhCCC-eEEEEEECCCC---chhHHHHCCCCcccEEEEEe-
Q psy5680 65 DDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKI---STVSETTSG-VEFVKINVENG---GGEIAREFEVQAVPTVIGFR- 136 (201)
Q Consensus 65 ~~~~~~~~~~~~vvv~f~a~wC~~C~~~~~~l---~~l~~~~~~-~~~~~vd~~~~---~~~l~~~~~v~~~Pti~~~~- 136 (201)
+.|.+++.++++++|+||++||++|+.+.+.+ +++++.+.+ +.++.+|++++ .++++++|++.++||+++|+
T Consensus 2 ~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~~~ 81 (104)
T cd02953 2 AALAQALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYLFYGP 81 (104)
T ss_pred HHHHHHHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEECC
Confidence 56788888899999999999999999999887 678888874 99999999873 17899999999999999997
Q ss_pred -CCeEEEEEeCCCCHHHHHHHHH
Q psy5680 137 -NGDPVDMVVGNADQDVIQTLVS 158 (201)
Q Consensus 137 -~G~~v~~~~G~~~~~~l~~~i~ 158 (201)
+|+.+.++.|..+.++|.++|+
T Consensus 82 ~~g~~~~~~~G~~~~~~l~~~l~ 104 (104)
T cd02953 82 GGEPEPLRLPGFLTADEFLEALE 104 (104)
T ss_pred CCCCCCcccccccCHHHHHHHhC
Confidence 7888899999999999998873
No 42
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.80 E-value=1.1e-18 Score=121.96 Aligned_cols=94 Identities=29% Similarity=0.447 Sum_probs=82.8
Q ss_pred HhHHHHHHhCCCcEEEEEECCCChhhHhhHHHHHHHHHhCC---C-eEEEEEECCCCchhHHHHCCCCcccEEEEEeCCe
Q psy5680 64 IDDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTS---G-VEFVKINVENGGGEIAREFEVQAVPTVIGFRNGD 139 (201)
Q Consensus 64 ~~~~~~~~~~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~---~-~~~~~vd~~~~~~~l~~~~~v~~~Pti~~~~~G~ 139 (201)
+++|++. .++++++|.||++||++|+.+.|.++++++.++ . +.++.+|+++. ++++++|+|.++||+++|++|
T Consensus 6 ~~~~~~~-~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~-~~~~~~~~I~~~Pt~~l~~~~- 82 (104)
T cd03000 6 DDSFKDV-RKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAY-SSIASEFGVRGYPTIKLLKGD- 82 (104)
T ss_pred hhhhhhh-ccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccC-HhHHhhcCCccccEEEEEcCC-
Confidence 4677774 467899999999999999999999999999873 2 88999999999 999999999999999999776
Q ss_pred EEEEEeCCCCHHHHHHHHHHH
Q psy5680 140 PVDMVVGNADQDVIQTLVSKL 160 (201)
Q Consensus 140 ~v~~~~G~~~~~~l~~~i~~~ 160 (201)
....+.|..+.+++.+++++.
T Consensus 83 ~~~~~~G~~~~~~l~~~~~~~ 103 (104)
T cd03000 83 LAYNYRGPRTKDDIVEFANRV 103 (104)
T ss_pred CceeecCCCCHHHHHHHHHhh
Confidence 456789999999999998864
No 43
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.79 E-value=2.7e-18 Score=130.69 Aligned_cols=88 Identities=18% Similarity=0.383 Sum_probs=79.4
Q ss_pred EEEeCCHhHHHHHHh-C--CCcEEEEEECCCChhhHhhHHHHHHHHHhCCCeEEEEEECCCCchhHHHHCCCCcccEEEE
Q psy5680 58 YLIIEKIDDFKQTIR-G--RNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTVIG 134 (201)
Q Consensus 58 v~~l~~~~~~~~~~~-~--~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~l~~~~~v~~~Pti~~ 134 (201)
+.+|++.++|.+.+. . +.+|+|+||++||++|+.+.|.|.+++++|+.+.|++||+++. +++.+|+|..+||+++
T Consensus 64 v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~--~l~~~f~v~~vPTlll 141 (175)
T cd02987 64 VYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASAT--GASDEFDTDALPALLV 141 (175)
T ss_pred EEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccch--hhHHhCCCCCCCEEEE
Confidence 899944499999983 2 3599999999999999999999999999999899999999976 7899999999999999
Q ss_pred EeCCeEEEEEeCC
Q psy5680 135 FRNGDPVDMVVGN 147 (201)
Q Consensus 135 ~~~G~~v~~~~G~ 147 (201)
|++|+.+.++.|.
T Consensus 142 yk~G~~v~~~vG~ 154 (175)
T cd02987 142 YKGGELIGNFVRV 154 (175)
T ss_pred EECCEEEEEEech
Confidence 9999999888773
No 44
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.79 E-value=1e-18 Score=119.96 Aligned_cols=96 Identities=24% Similarity=0.510 Sum_probs=86.9
Q ss_pred EeCCHhHHHHHHhCCCcEEEEEECCCChhhHhhHHHHHHHHHhC--CC-eEEEEEECCCCchhHHHHCCCCcccEEEEEe
Q psy5680 60 IIEKIDDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETT--SG-VEFVKINVENGGGEIAREFEVQAVPTVIGFR 136 (201)
Q Consensus 60 ~l~~~~~~~~~~~~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~--~~-~~~~~vd~~~~~~~l~~~~~v~~~Pti~~~~ 136 (201)
++ +.++|.+.+.++++++|+||++||++|+.+.+.+.++++.+ .+ +.++.+|++++ +.++++|+|.++|++++|+
T Consensus 2 ~l-~~~~~~~~i~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~i~~~Pt~~~~~ 79 (101)
T cd02961 2 EL-TDDNFDELVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTAN-NDLCSEYGVRGYPTIKLFP 79 (101)
T ss_pred cc-cHHHHHHHHhCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccch-HHHHHhCCCCCCCEEEEEc
Confidence 45 78899999977779999999999999999999999999999 34 99999999998 9999999999999999997
Q ss_pred CC-eEEEEEeCCCCHHHHHHHH
Q psy5680 137 NG-DPVDMVVGNADQDVIQTLV 157 (201)
Q Consensus 137 ~G-~~v~~~~G~~~~~~l~~~i 157 (201)
+| +...++.|..+.+++.+|+
T Consensus 80 ~~~~~~~~~~g~~~~~~i~~~~ 101 (101)
T cd02961 80 NGSKEPVKYEGPRTLESLVEFI 101 (101)
T ss_pred CCCcccccCCCCcCHHHHHhhC
Confidence 77 7777899988999988874
No 45
>KOG0190|consensus
Probab=99.79 E-value=5.8e-19 Score=150.86 Aligned_cols=109 Identities=30% Similarity=0.539 Sum_probs=101.5
Q ss_pred EEEeCCHhHHHHHHhCCCcEEEEEECCCChhhHhhHHHHHHHHHhCCC----eEEEEEECCCCchhHHHHCCCCcccEEE
Q psy5680 58 YLIIEKIDDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG----VEFVKINVENGGGEIAREFEVQAVPTVI 133 (201)
Q Consensus 58 v~~l~~~~~~~~~~~~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~----~~~~~vd~~~~~~~l~~~~~v~~~Pti~ 133 (201)
+..+ +.++|+..+..+..++|.||||||++|+++.|.+++.+..+.. +.+++||++++ .++|.+|+|.++||+.
T Consensus 27 Vl~L-t~dnf~~~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~-~~~~~~y~v~gyPTlk 104 (493)
T KOG0190|consen 27 VLVL-TKDNFKETINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEE-SDLASKYEVRGYPTLK 104 (493)
T ss_pred eEEE-ecccHHHHhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchh-hhhHhhhcCCCCCeEE
Confidence 9999 9999999999999999999999999999999999999988764 89999999999 9999999999999999
Q ss_pred EEeCCeEEEEEeCCCCHHHHHHHHHHHHhhhhhcc
Q psy5680 134 GFRNGDPVDMVVGNADQDVIQTLVSKLSQKLATHY 168 (201)
Q Consensus 134 ~~~~G~~v~~~~G~~~~~~l~~~i~~~~~~~~~~~ 168 (201)
+|++|+....|.|..+.+.+..|+.+..++.....
T Consensus 105 iFrnG~~~~~Y~G~r~adgIv~wl~kq~gPa~~~l 139 (493)
T KOG0190|consen 105 IFRNGRSAQDYNGPREADGIVKWLKKQSGPASKTL 139 (493)
T ss_pred EEecCCcceeccCcccHHHHHHHHHhccCCCceec
Confidence 99999987899999999999999999877665533
No 46
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.79 E-value=2.6e-18 Score=121.91 Aligned_cols=96 Identities=17% Similarity=0.344 Sum_probs=84.8
Q ss_pred HHHHHHhCCCcEEEEEECCCChhhHhhHHHHHHHHHhCCCeEEEEEECCCCchhHHHHCCCCcccEEEEEeCCeEEE--E
Q psy5680 66 DFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTVIGFRNGDPVD--M 143 (201)
Q Consensus 66 ~~~~~~~~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~l~~~~~v~~~Pti~~~~~G~~v~--~ 143 (201)
+|.+.+..+..++|+||++||++|+.+.+.++++++.++.+.+..+|++++ ++++++|+|.++||+++|++|+... +
T Consensus 14 ~~~~~l~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~~-~~l~~~~~v~~vPt~~i~~~g~~~~~~~ 92 (113)
T cd02975 14 EFFKEMKNPVDLVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDED-KEKAEKYGVERVPTTIFLQDGGKDGGIR 92 (113)
T ss_pred HHHHHhCCCeEEEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCcC-HHHHHHcCCCcCCEEEEEeCCeecceEE
Confidence 355555667789999999999999999999999999886699999999999 9999999999999999998876544 7
Q ss_pred EeCCCCHHHHHHHHHHHHh
Q psy5680 144 VVGNADQDVIQTLVSKLSQ 162 (201)
Q Consensus 144 ~~G~~~~~~l~~~i~~~~~ 162 (201)
+.|..+..++.++|+..+.
T Consensus 93 ~~G~~~~~el~~~i~~i~~ 111 (113)
T cd02975 93 YYGLPAGYEFASLIEDIVR 111 (113)
T ss_pred EEecCchHHHHHHHHHHHh
Confidence 8898999999999988764
No 47
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.78 E-value=5.6e-18 Score=121.70 Aligned_cols=98 Identities=16% Similarity=0.368 Sum_probs=83.5
Q ss_pred EEEeCCHhHHHHHHhCCCcEEEEEECCCChhhHhhHHHHHHHHHhCCCeEEEEEECCCCch-----------hHHHHCC-
Q psy5680 58 YLIIEKIDDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGG-----------EIAREFE- 125 (201)
Q Consensus 58 v~~l~~~~~~~~~~~~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~-----------~l~~~~~- 125 (201)
+..+ +.++|.+.+..++.++|+||++|||+|+.+.|.|++++++. +..++.+|++.+ + ++.++|+
T Consensus 8 ~~~i-t~~~~~~~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~-~~~~y~vdvd~~-~~~~~~~~~~~~~~~~~~~i 84 (122)
T TIGR01295 8 LEVT-TVVRALEALDKKETATFFIGRKTCPYCRKFSGTLSGVVAQT-KAPIYYIDSENN-GSFEMSSLNDLTAFRSRFGI 84 (122)
T ss_pred ceec-CHHHHHHHHHcCCcEEEEEECCCChhHHHHhHHHHHHHHhc-CCcEEEEECCCc-cCcCcccHHHHHHHHHHcCC
Confidence 6778 89999999988999999999999999999999999999984 477888888854 2 4556665
Q ss_pred ---CCcccEEEEEeCCeEEEEEeC-CCCHHHHHHHHH
Q psy5680 126 ---VQAVPTVIGFRNGDPVDMVVG-NADQDVIQTLVS 158 (201)
Q Consensus 126 ---v~~~Pti~~~~~G~~v~~~~G-~~~~~~l~~~i~ 158 (201)
+.++||+++|++|+.+.+..| ..+.++|.+++.
T Consensus 85 ~~~i~~~PT~v~~k~Gk~v~~~~G~~~~~~~l~~~~~ 121 (122)
T TIGR01295 85 PTSFMGTPTFVHITDGKQVSVRCGSSTTAQELQDIAA 121 (122)
T ss_pred cccCCCCCEEEEEeCCeEEEEEeCCCCCHHHHHHHhh
Confidence 455999999999999999999 557899988764
No 48
>PTZ00062 glutaredoxin; Provisional
Probab=99.78 E-value=7.7e-18 Score=130.49 Aligned_cols=115 Identities=14% Similarity=0.177 Sum_probs=101.6
Q ss_pred CHhHHHHHHhC-CCcEEEEEECCCChhhHhhHHHHHHHHHhCCCeEEEEEECCCCchhHHHHCCCCcccEEEEEeCCeEE
Q psy5680 63 KIDDFKQTIRG-RNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTVIGFRNGDPV 141 (201)
Q Consensus 63 ~~~~~~~~~~~-~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~l~~~~~v~~~Pti~~~~~G~~v 141 (201)
+.++|++.+.. .+.++++|||+||++|+.+.+.+++++++|+++.|+.||.+ |+|.++|++++|++|+.+
T Consensus 5 ~~ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~d---------~~V~~vPtfv~~~~g~~i 75 (204)
T PTZ00062 5 KKEEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFPSLEFYVVNLA---------DANNEYGVFEFYQNSQLI 75 (204)
T ss_pred CHHHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCCCcEEEEEccc---------cCcccceEEEEEECCEEE
Confidence 78899999844 48899999999999999999999999999999999999965 889999999999999999
Q ss_pred EEEeCCCCHHHHHHHHHHHHhhhhhccccccCCCCccHHHHHHHHhhcceEEEee
Q psy5680 142 DMVVGNADQDVIQTLVSKLSQKLATHYQVDLTTGTPDQVYLIVLLRYDQVYLIVC 196 (201)
Q Consensus 142 ~~~~G~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (201)
.++.| .+..++...+.++...... +....++..|+...+++||.=
T Consensus 76 ~r~~G-~~~~~~~~~~~~~~~~~~~---------~~~~~~v~~li~~~~Vvvf~K 120 (204)
T PTZ00062 76 NSLEG-CNTSTLVSFIRGWAQKGSS---------EDTVEKIERLIRNHKILLFMK 120 (204)
T ss_pred eeeeC-CCHHHHHHHHHHHcCCCCH---------HHHHHHHHHHHhcCCEEEEEc
Confidence 99999 8899999999888764321 234578999999999999964
No 49
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.76 E-value=1.4e-17 Score=112.14 Aligned_cols=91 Identities=34% Similarity=0.732 Sum_probs=83.7
Q ss_pred HHHHHHhCCCcEEEEEECCCChhhHhhHHHHHHHHHhCCCeEEEEEECCCCchhHHHHCCCCcccEEEEEeCCeEEEEEe
Q psy5680 66 DFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTVIGFRNGDPVDMVV 145 (201)
Q Consensus 66 ~~~~~~~~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~l~~~~~v~~~Pti~~~~~G~~v~~~~ 145 (201)
+|++.+..+++++|+||++||++|+.+.+.++++++..+++.++.+|++.. ++++++|++.++|+++++++|+.+..+.
T Consensus 2 ~~~~~~~~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~v~~~P~~~~~~~g~~~~~~~ 80 (93)
T cd02947 2 EFEELIKSAKPVVVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDEN-PELAEEYGVRSIPTFLFFKNGKEVDRVV 80 (93)
T ss_pred chHHHHhcCCcEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECCCC-hhHHHhcCcccccEEEEEECCEEEEEEe
Confidence 567777666999999999999999999999999999866699999999999 9999999999999999999999999999
Q ss_pred CCCCHHHHHHHH
Q psy5680 146 GNADQDVIQTLV 157 (201)
Q Consensus 146 G~~~~~~l~~~i 157 (201)
|..+.+.|.++|
T Consensus 81 g~~~~~~l~~~i 92 (93)
T cd02947 81 GADPKEELEEFL 92 (93)
T ss_pred cCCCHHHHHHHh
Confidence 988889988876
No 50
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.76 E-value=1.8e-17 Score=127.83 Aligned_cols=97 Identities=21% Similarity=0.381 Sum_probs=83.6
Q ss_pred eEEEeCCHhHHHHHH-hC--CCcEEEEEECCCChhhHhhHHHHHHHHHhCCCeEEEEEECCCCchhHHHHCCCCcccEEE
Q psy5680 57 AYLIIEKIDDFKQTI-RG--RNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTVI 133 (201)
Q Consensus 57 ~v~~l~~~~~~~~~~-~~--~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~l~~~~~v~~~Pti~ 133 (201)
.+.++ +.++|...+ .. +.+|||+||++||++|+.+.+.|++++++|+.+.|+.||++.. ...|++..+||++
T Consensus 83 ~v~ei-s~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad~~----~~~~~i~~lPTll 157 (192)
T cd02988 83 EVYEI-SKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFPDTKFVKIISTQC----IPNYPDKNLPTIL 157 (192)
T ss_pred eEEEe-CHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCCCCEEEEEEhHHh----HhhCCCCCCCEEE
Confidence 49999 899999877 32 4689999999999999999999999999999899999998765 5799999999999
Q ss_pred EEeCCeEEEEEeCC-------CCHHHHHHHHH
Q psy5680 134 GFRNGDPVDMVVGN-------ADQDVIQTLVS 158 (201)
Q Consensus 134 ~~~~G~~v~~~~G~-------~~~~~l~~~i~ 158 (201)
+|++|+.+.++.|. .+.++|..+|.
T Consensus 158 iyk~G~~v~~ivG~~~~gg~~~~~~~lE~~L~ 189 (192)
T cd02988 158 VYRNGDIVKQFIGLLEFGGMNTTMEDLEWLLV 189 (192)
T ss_pred EEECCEEEEEEeCchhhCCCCCCHHHHHHHHH
Confidence 99999999998883 45556665554
No 51
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.75 E-value=2.1e-17 Score=119.07 Aligned_cols=100 Identities=24% Similarity=0.453 Sum_probs=84.3
Q ss_pred HhHHHHHHhCC-CcEEEEEECCCChhhHhhHHHHH---HHHHhCCC-eEEEEEECCCC------------chhHHHHCCC
Q psy5680 64 IDDFKQTIRGR-NPVLAYFFKPSCGFCKQLEPKIS---TVSETTSG-VEFVKINVENG------------GGEIAREFEV 126 (201)
Q Consensus 64 ~~~~~~~~~~~-~~vvv~f~a~wC~~C~~~~~~l~---~l~~~~~~-~~~~~vd~~~~------------~~~l~~~~~v 126 (201)
.+.+..+..++ ++++|+||++||++|+.+.+.+. .+.+.+.+ +.++.+|++.. ..+++.+|+|
T Consensus 3 ~~~~~~a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v 82 (125)
T cd02951 3 YEDLAEAAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRV 82 (125)
T ss_pred HHHHHHHHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCC
Confidence 45677777778 99999999999999999999874 56666655 88899998863 1688999999
Q ss_pred CcccEEEEEeC--CeEEEEEeCCCCHHHHHHHHHHHHhh
Q psy5680 127 QAVPTVIGFRN--GDPVDMVVGNADQDVIQTLVSKLSQK 163 (201)
Q Consensus 127 ~~~Pti~~~~~--G~~v~~~~G~~~~~~l~~~i~~~~~~ 163 (201)
.++||+++|.+ |+.+.++.|..+.+++.++|+.++..
T Consensus 83 ~~~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~~~ 121 (125)
T cd02951 83 RFTPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEYVQEK 121 (125)
T ss_pred ccccEEEEEcCCCCceeEEecCCCCHHHHHHHHHHHHhh
Confidence 99999999954 68889999999999999999988754
No 52
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.75 E-value=9.2e-18 Score=118.62 Aligned_cols=98 Identities=14% Similarity=0.214 Sum_probs=84.2
Q ss_pred EEEeCCHhHHHHHHhCCCcEEEEEEC--CCCh---hhHhhHHHHHHHHHhCCCeEEEEEECC-----CCchhHHHHCCCC
Q psy5680 58 YLIIEKIDDFKQTIRGRNPVLAYFFK--PSCG---FCKQLEPKISTVSETTSGVEFVKINVE-----NGGGEIAREFEVQ 127 (201)
Q Consensus 58 v~~l~~~~~~~~~~~~~~~vvv~f~a--~wC~---~C~~~~~~l~~l~~~~~~~~~~~vd~~-----~~~~~l~~~~~v~ 127 (201)
+.+| +..+|++.+.+.+.++|.||| |||+ +|..+.|.+.+-+. .+.++.|||+ ++ .+|+++|+|.
T Consensus 3 ~v~L-~~~nF~~~v~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~---~v~lakVd~~d~~~~~~-~~L~~~y~I~ 77 (116)
T cd03007 3 CVDL-DTVTFYKVIPKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATD---DLLVAEVGIKDYGEKLN-MELGERYKLD 77 (116)
T ss_pred eeEC-ChhhHHHHHhcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcC---ceEEEEEecccccchhh-HHHHHHhCCC
Confidence 7889 999999999899999999999 9998 77777776665442 2889999994 56 8899999999
Q ss_pred --cccEEEEEeCCe--EEEEEeCC-CCHHHHHHHHHHH
Q psy5680 128 --AVPTVIGFRNGD--PVDMVVGN-ADQDVIQTLVSKL 160 (201)
Q Consensus 128 --~~Pti~~~~~G~--~v~~~~G~-~~~~~l~~~i~~~ 160 (201)
++||+.+|++|. ....|.|. .+.+.|.+||.++
T Consensus 78 ~~gyPTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 78 KESYPVIYLFHGGDFENPVPYSGADVTVDALQRFLKGN 115 (116)
T ss_pred cCCCCEEEEEeCCCcCCCccCCCCcccHHHHHHHHHhc
Confidence 999999999885 44588996 9999999999874
No 53
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.74 E-value=1.1e-17 Score=118.79 Aligned_cols=81 Identities=17% Similarity=0.406 Sum_probs=72.2
Q ss_pred EEEeCCHhHHHHHH-hCCCcEEEEEECCCChhhHhhHHHHHHHHHhCC---C-eEEEEEECC--CCchhHHHHCCCCccc
Q psy5680 58 YLIIEKIDDFKQTI-RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTS---G-VEFVKINVE--NGGGEIAREFEVQAVP 130 (201)
Q Consensus 58 v~~l~~~~~~~~~~-~~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~---~-~~~~~vd~~--~~~~~l~~~~~v~~~P 130 (201)
+.++ +.++|++.+ ..+++++|+||++||++|+.+.+.|+++++.++ + +.++.+|++ .+ ++++++|+|.++|
T Consensus 3 v~~l-~~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~-~~~~~~~~i~~~P 80 (114)
T cd02992 3 VIVL-DAASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEEN-VALCRDFGVTGYP 80 (114)
T ss_pred eEEC-CHHhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhh-HHHHHhCCCCCCC
Confidence 7889 999999998 556899999999999999999999999998764 3 889999986 35 7899999999999
Q ss_pred EEEEEeCCeE
Q psy5680 131 TVIGFRNGDP 140 (201)
Q Consensus 131 ti~~~~~G~~ 140 (201)
|+++|++|+.
T Consensus 81 t~~lf~~~~~ 90 (114)
T cd02992 81 TLRYFPPFSK 90 (114)
T ss_pred EEEEECCCCc
Confidence 9999988873
No 54
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.74 E-value=2.6e-17 Score=142.33 Aligned_cols=106 Identities=28% Similarity=0.527 Sum_probs=96.9
Q ss_pred EEEeCCHhHHHHHHhCCCcEEEEEECCCChhhHhhHHHHHHHHHhCCC----eEEEEEECCCCchhHHHHCCCCcccEEE
Q psy5680 58 YLIIEKIDDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG----VEFVKINVENGGGEIAREFEVQAVPTVI 133 (201)
Q Consensus 58 v~~l~~~~~~~~~~~~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~----~~~~~vd~~~~~~~l~~~~~v~~~Pti~ 133 (201)
+..+ +.++|+.++.++++++|.|||+||++|+.+.|.+.++++.+.+ +.|+.|||+.+ ++++++|+|.++||++
T Consensus 3 v~~l-~~~~~~~~i~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~-~~l~~~~~i~~~Pt~~ 80 (462)
T TIGR01130 3 VLVL-TKDNFDDFIKSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEE-KDLAQKYGVSGYPTLK 80 (462)
T ss_pred ceEC-CHHHHHHHHhcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCc-HHHHHhCCCccccEEE
Confidence 6788 9999999998889999999999999999999999998887642 89999999999 9999999999999999
Q ss_pred EEeCCeE-EEEEeCCCCHHHHHHHHHHHHhhhh
Q psy5680 134 GFRNGDP-VDMVVGNADQDVIQTLVSKLSQKLA 165 (201)
Q Consensus 134 ~~~~G~~-v~~~~G~~~~~~l~~~i~~~~~~~~ 165 (201)
+|++|+. +..+.|..+.+.+.+|+.+.+.+..
T Consensus 81 ~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~~~ 113 (462)
T TIGR01130 81 IFRNGEDSVSDYNGPRDADGIVKYMKKQSGPAV 113 (462)
T ss_pred EEeCCccceeEecCCCCHHHHHHHHHHhcCCCc
Confidence 9999987 7899999999999999999876443
No 55
>PTZ00102 disulphide isomerase; Provisional
Probab=99.74 E-value=3e-17 Score=142.90 Aligned_cols=106 Identities=27% Similarity=0.498 Sum_probs=96.9
Q ss_pred EEEeCCHhHHHHHHhCCCcEEEEEECCCChhhHhhHHHHHHHHHhCC----CeEEEEEECCCCchhHHHHCCCCcccEEE
Q psy5680 58 YLIIEKIDDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTS----GVEFVKINVENGGGEIAREFEVQAVPTVI 133 (201)
Q Consensus 58 v~~l~~~~~~~~~~~~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~----~~~~~~vd~~~~~~~l~~~~~v~~~Pti~ 133 (201)
+..+ +.++|+..+.+++.++|+|||+||++|+.+.|.+.++++.+. ++.++.+||+.+ ++++++|+|.++||++
T Consensus 34 v~~l-~~~~f~~~i~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~-~~l~~~~~i~~~Pt~~ 111 (477)
T PTZ00102 34 VTVL-TDSTFDKFITENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEE-MELAQEFGVRGYPTIK 111 (477)
T ss_pred cEEc-chhhHHHHHhcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCC-HHHHHhcCCCcccEEE
Confidence 8899 999999999888999999999999999999999999886653 399999999999 9999999999999999
Q ss_pred EEeCCeEEEEEeCCCCHHHHHHHHHHHHhhhhh
Q psy5680 134 GFRNGDPVDMVVGNADQDVIQTLVSKLSQKLAT 166 (201)
Q Consensus 134 ~~~~G~~v~~~~G~~~~~~l~~~i~~~~~~~~~ 166 (201)
+|++|+.+ ++.|..+.+.|.+|+.++..+...
T Consensus 112 ~~~~g~~~-~y~g~~~~~~l~~~l~~~~~~~~~ 143 (477)
T PTZ00102 112 FFNKGNPV-NYSGGRTADGIVSWIKKLTGPAVT 143 (477)
T ss_pred EEECCceE-EecCCCCHHHHHHHHHHhhCCCce
Confidence 99999877 899999999999999998766543
No 56
>PTZ00102 disulphide isomerase; Provisional
Probab=99.71 E-value=6.7e-17 Score=140.71 Aligned_cols=104 Identities=22% Similarity=0.391 Sum_probs=95.1
Q ss_pred EEEeCCHhHHHHHH-hCCCcEEEEEECCCChhhHhhHHHHHHHHHhCCC---eEEEEEECCCCchhHHHHCCCCcccEEE
Q psy5680 58 YLIIEKIDDFKQTI-RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG---VEFVKINVENGGGEIAREFEVQAVPTVI 133 (201)
Q Consensus 58 v~~l~~~~~~~~~~-~~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~---~~~~~vd~~~~~~~l~~~~~v~~~Pti~ 133 (201)
+..+ +.++|++.+ ..+++++|+|||+||++|+.+.|.++++++.+++ +.++.+|++.+ ...+++|++.++||++
T Consensus 359 v~~l-~~~~f~~~v~~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~-~~~~~~~~v~~~Pt~~ 436 (477)
T PTZ00102 359 VKVV-VGNTFEEIVFKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTAN-ETPLEEFSWSAFPTIL 436 (477)
T ss_pred eEEe-cccchHHHHhcCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCC-ccchhcCCCcccCeEE
Confidence 8999 999999987 8889999999999999999999999999988864 88999999999 8889999999999999
Q ss_pred EEeCCeEE-EEEeCCCCHHHHHHHHHHHHhh
Q psy5680 134 GFRNGDPV-DMVVGNADQDVIQTLVSKLSQK 163 (201)
Q Consensus 134 ~~~~G~~v-~~~~G~~~~~~l~~~i~~~~~~ 163 (201)
+|++|+.+ .++.|..+.+++.++|+++...
T Consensus 437 ~~~~~~~~~~~~~G~~~~~~l~~~i~~~~~~ 467 (477)
T PTZ00102 437 FVKAGERTPIPYEGERTVEGFKEFVNKHATN 467 (477)
T ss_pred EEECCCcceeEecCcCCHHHHHHHHHHcCCC
Confidence 99877655 4899999999999999998754
No 57
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.71 E-value=1.6e-16 Score=136.36 Aligned_cols=103 Identities=19% Similarity=0.382 Sum_probs=88.2
Q ss_pred eEEEeCCHhHHHHHH---hCCCcEEEEEECCCChhhHhhHHHHHHHHHhCCC--eEEEEEECCCCchhHH-HHCCCCccc
Q psy5680 57 AYLIIEKIDDFKQTI---RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG--VEFVKINVENGGGEIA-REFEVQAVP 130 (201)
Q Consensus 57 ~v~~l~~~~~~~~~~---~~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~--~~~~~vd~~~~~~~l~-~~~~v~~~P 130 (201)
.+.+| +.++|++.+ ..+++++|+|||+||++|+.+.|.|+++++++.+ +.|+.||++.+...++ ++|+|.++|
T Consensus 352 ~Vv~L-~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I~~~P 430 (463)
T TIGR00424 352 NVVSL-SRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFP 430 (463)
T ss_pred CeEEC-CHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCCCccc
Confidence 38999 999999988 4889999999999999999999999999999975 8999999997612454 689999999
Q ss_pred EEEEEeCCeE-EEEEe-CCCCHHHHHHHHHHH
Q psy5680 131 TVIGFRNGDP-VDMVV-GNADQDVIQTLVSKL 160 (201)
Q Consensus 131 ti~~~~~G~~-v~~~~-G~~~~~~l~~~i~~~ 160 (201)
|+++|++|.. ...|. |..+.+.|..||+..
T Consensus 431 Tii~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~~ 462 (463)
T TIGR00424 431 TILFFPKHSSRPIKYPSEKRDVDSLMSFVNLL 462 (463)
T ss_pred eEEEEECCCCCceeCCCCCCCHHHHHHHHHhh
Confidence 9999988853 34576 579999999998753
No 58
>PLN02309 5'-adenylylsulfate reductase
Probab=99.70 E-value=1.8e-16 Score=136.10 Aligned_cols=101 Identities=21% Similarity=0.449 Sum_probs=89.2
Q ss_pred EEEeCCHhHHHHHH---hCCCcEEEEEECCCChhhHhhHHHHHHHHHhCCC--eEEEEEECC-CCchhHHH-HCCCCccc
Q psy5680 58 YLIIEKIDDFKQTI---RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG--VEFVKINVE-NGGGEIAR-EFEVQAVP 130 (201)
Q Consensus 58 v~~l~~~~~~~~~~---~~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~--~~~~~vd~~-~~~~~l~~-~~~v~~~P 130 (201)
+.++ +.++|++.+ ..+++++|+||||||++|+.+.|.|.++++.+.+ +.|+.+|++ .+ .+++. +|+|.++|
T Consensus 347 Vv~L-t~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~-~~la~~~~~I~~~P 424 (457)
T PLN02309 347 VVAL-SRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQ-KEFAKQELQLGSFP 424 (457)
T ss_pred cEEC-CHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcc-hHHHHhhCCCceee
Confidence 8999 999999987 5889999999999999999999999999999875 999999999 77 78886 69999999
Q ss_pred EEEEEeCCeE-EEEEe-CCCCHHHHHHHHHHH
Q psy5680 131 TVIGFRNGDP-VDMVV-GNADQDVIQTLVSKL 160 (201)
Q Consensus 131 ti~~~~~G~~-v~~~~-G~~~~~~l~~~i~~~ 160 (201)
|+++|++|.. ...|. |..+.+.|..||+..
T Consensus 425 Til~f~~g~~~~v~Y~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 425 TILLFPKNSSRPIKYPSEKRDVDSLLSFVNSL 456 (457)
T ss_pred EEEEEeCCCCCeeecCCCCcCHHHHHHHHHHh
Confidence 9999987753 34666 468999999999864
No 59
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.66 E-value=1.6e-15 Score=101.02 Aligned_cols=79 Identities=25% Similarity=0.476 Sum_probs=71.6
Q ss_pred EEEEEECCCChhhHhhHHHHHHHHHhCCC-eEEEEEECCCCchhHHHHCCCCcccEEEEEeCCeEEEEEeCCCCHHHHHH
Q psy5680 77 VLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENGGGEIAREFEVQAVPTVIGFRNGDPVDMVVGNADQDVIQT 155 (201)
Q Consensus 77 vvv~f~a~wC~~C~~~~~~l~~l~~~~~~-~~~~~vd~~~~~~~l~~~~~v~~~Pti~~~~~G~~v~~~~G~~~~~~l~~ 155 (201)
.+..||++||++|+.+.+.++++++.++. +.+..+|++++ ++++++|++.++|++++ +|+. ++.|..+.+++.+
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~-~~~~~~~~v~~vPt~~~--~g~~--~~~G~~~~~~l~~ 76 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMEN-PQKAMEYGIMAVPAIVI--NGDV--EFIGAPTKEELVE 76 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccC-HHHHHHcCCccCCEEEE--CCEE--EEecCCCHHHHHH
Confidence 57899999999999999999999999876 99999999999 99999999999999986 6763 7889889999999
Q ss_pred HHHHH
Q psy5680 156 LVSKL 160 (201)
Q Consensus 156 ~i~~~ 160 (201)
+|++.
T Consensus 77 ~l~~~ 81 (82)
T TIGR00411 77 AIKKR 81 (82)
T ss_pred HHHhh
Confidence 98875
No 60
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.66 E-value=9.1e-16 Score=106.56 Aligned_cols=87 Identities=16% Similarity=0.325 Sum_probs=78.7
Q ss_pred CCCcEEEEEECCCChhhHhhHHHHHHHHHhCCC-eEEEEEECCCCchhHHHHCCCC--cccEEEEEeC--CeEEEEEeCC
Q psy5680 73 GRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENGGGEIAREFEVQ--AVPTVIGFRN--GDPVDMVVGN 147 (201)
Q Consensus 73 ~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~-~~~~~vd~~~~~~~l~~~~~v~--~~Pti~~~~~--G~~v~~~~G~ 147 (201)
.++++++.|+++||++|..+.+.++++++++.+ +.|+.+|++++ +.+++.|++. ++|+++++++ |+......|.
T Consensus 11 ~~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~-~~~~~~~~i~~~~~P~~~~~~~~~~~k~~~~~~~ 89 (103)
T cd02982 11 SGKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDF-GRHLEYFGLKEEDLPVIAIINLSDGKKYLMPEEE 89 (103)
T ss_pred cCCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhh-HHHHHHcCCChhhCCEEEEEecccccccCCCccc
Confidence 378999999999999999999999999999988 99999999999 9999999999 9999999987 6665555565
Q ss_pred CCHHHHHHHHHHH
Q psy5680 148 ADQDVIQTLVSKL 160 (201)
Q Consensus 148 ~~~~~l~~~i~~~ 160 (201)
.+.+.+.+||.+.
T Consensus 90 ~~~~~l~~fi~~~ 102 (103)
T cd02982 90 LTAESLEEFVEDF 102 (103)
T ss_pred cCHHHHHHHHHhh
Confidence 6999999999865
No 61
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.66 E-value=1.2e-15 Score=108.54 Aligned_cols=81 Identities=15% Similarity=0.423 Sum_probs=70.3
Q ss_pred eCCHhHHHHHHh--CCCcEEEEEEC-------CCChhhHhhHHHHHHHHHhCCC-eEEEEEECCCC------chhHHHHC
Q psy5680 61 IEKIDDFKQTIR--GRNPVLAYFFK-------PSCGFCKQLEPKISTVSETTSG-VEFVKINVENG------GGEIAREF 124 (201)
Q Consensus 61 l~~~~~~~~~~~--~~~~vvv~f~a-------~wC~~C~~~~~~l~~l~~~~~~-~~~~~vd~~~~------~~~l~~~~ 124 (201)
+++.++|.+.+. ++++++|.||| +||++|+.+.|.++++++++++ +.|+.||+++. +.++..++
T Consensus 6 ~~~~~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~ 85 (119)
T cd02952 6 VRGYEEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDP 85 (119)
T ss_pred ccCHHHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhcc
Confidence 347788888883 37899999999 9999999999999999999995 99999999763 15899999
Q ss_pred CCC-cccEEEEEeCCeEE
Q psy5680 125 EVQ-AVPTVIGFRNGDPV 141 (201)
Q Consensus 125 ~v~-~~Pti~~~~~G~~v 141 (201)
+|. ++||+++|++|+.+
T Consensus 86 ~I~~~iPT~~~~~~~~~l 103 (119)
T cd02952 86 KLTTGVPTLLRWKTPQRL 103 (119)
T ss_pred CcccCCCEEEEEcCCcee
Confidence 999 99999999877543
No 62
>KOG0190|consensus
Probab=99.66 E-value=2e-16 Score=135.39 Aligned_cols=102 Identities=21% Similarity=0.442 Sum_probs=90.5
Q ss_pred eEEEeCCHhHHHHHH-hCCCcEEEEEECCCChhhHhhHHHHHHHHHhCCC---eEEEEEECCCCchhHHHHCCCCcccEE
Q psy5680 57 AYLIIEKIDDFKQTI-RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG---VEFVKINVENGGGEIAREFEVQAVPTV 132 (201)
Q Consensus 57 ~v~~l~~~~~~~~~~-~~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~---~~~~~vd~~~~~~~l~~~~~v~~~Pti 132 (201)
+|+.+ ..++|++++ ++++-|+|.||||||+||+++.|.|++|++.|++ +.++++|.+.| ++ ....+.++|||
T Consensus 367 pVkvv-Vgknfd~iv~de~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDaTaN--d~-~~~~~~~fPTI 442 (493)
T KOG0190|consen 367 PVKVV-VGKNFDDIVLDEGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDATAN--DV-PSLKVDGFPTI 442 (493)
T ss_pred CeEEE-eecCHHHHhhccccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEeccccc--cC-ccccccccceE
Confidence 38889 999999999 9999999999999999999999999999999986 99999999988 33 35667789999
Q ss_pred EEEeCCe--EEEEEeCCCCHHHHHHHHHHHHh
Q psy5680 133 IGFRNGD--PVDMVVGNADQDVIQTLVSKLSQ 162 (201)
Q Consensus 133 ~~~~~G~--~v~~~~G~~~~~~l~~~i~~~~~ 162 (201)
.+|+.|. .+..|.|..+.++|..++.+.-.
T Consensus 443 ~~~pag~k~~pv~y~g~R~le~~~~fi~~~a~ 474 (493)
T KOG0190|consen 443 LFFPAGHKSNPVIYNGDRTLEDLKKFIKKSAT 474 (493)
T ss_pred EEecCCCCCCCcccCCCcchHHHHhhhccCCC
Confidence 9998776 35578999999999999988754
No 63
>KOG4277|consensus
Probab=99.63 E-value=1.7e-15 Score=120.97 Aligned_cols=116 Identities=21% Similarity=0.360 Sum_probs=91.0
Q ss_pred hCCCcEEEEEECCCChhhHhhHHHHHHHHHhCCC----eEEEEEECCCCchhHHHHCCCCcccEEEEEeCCeEEEEEeCC
Q psy5680 72 RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG----VEFVKINVENGGGEIAREFEVQAVPTVIGFRNGDPVDMVVGN 147 (201)
Q Consensus 72 ~~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~----~~~~~vd~~~~~~~l~~~~~v~~~Pti~~~~~G~~v~~~~G~ 147 (201)
..+..++|.||||||++|+++.|.|.++.-.+++ +.+.++|++.. +.++.+|+|++|||+.+|++|.. ..|.|.
T Consensus 41 kdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f-~aiAnefgiqGYPTIk~~kgd~a-~dYRG~ 118 (468)
T KOG4277|consen 41 KDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRF-PAIANEFGIQGYPTIKFFKGDHA-IDYRGG 118 (468)
T ss_pred ccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccc-hhhHhhhccCCCceEEEecCCee-eecCCC
Confidence 4678899999999999999999999999877764 99999999999 99999999999999999987754 578888
Q ss_pred CCHHHHHHHHHHHHhhhhhccccccCCCCccHHHHHHH-HhhcceEEEee
Q psy5680 148 ADQDVIQTLVSKLSQKLATHYQVDLTTGTPDQVYLIVL-LRYDQVYLIVC 196 (201)
Q Consensus 148 ~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 196 (201)
..++.+.+|..+...+...-. ...+.-.++| -|.+..|.|++
T Consensus 119 R~Kd~iieFAhR~a~aiI~pi-------~enQ~~fehlq~Rhq~ffVf~G 161 (468)
T KOG4277|consen 119 REKDAIIEFAHRCAAAIIEPI-------NENQIEFEHLQARHQPFFVFFG 161 (468)
T ss_pred ccHHHHHHHHHhcccceeeec-------ChhHHHHHHHhhccCceEEEEe
Confidence 999999999887654432211 1122333333 34555666666
No 64
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.61 E-value=9.8e-15 Score=114.79 Aligned_cols=89 Identities=20% Similarity=0.355 Sum_probs=77.6
Q ss_pred CCCcEEEEEEC---CCChhhHhhHHHHHHHHHhCCC--eEEEEEECCCCchhHHHHCCCCcccEEEEEeCCeEEE-EEeC
Q psy5680 73 GRNPVLAYFFK---PSCGFCKQLEPKISTVSETTSG--VEFVKINVENGGGEIAREFEVQAVPTVIGFRNGDPVD-MVVG 146 (201)
Q Consensus 73 ~~~~vvv~f~a---~wC~~C~~~~~~l~~l~~~~~~--~~~~~vd~~~~~~~l~~~~~v~~~Pti~~~~~G~~v~-~~~G 146 (201)
++...++.|++ +||++|+.+.|.++++++.+++ +.++.+|.+++ ++++++|+|.++||+++|++|+.+. ++.|
T Consensus 18 ~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~-~~l~~~~~V~~~Pt~~~f~~g~~~~~~~~G 96 (215)
T TIGR02187 18 KNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPED-KEEAEKYGVERVPTTIILEEGKDGGIRYTG 96 (215)
T ss_pred CCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCccc-HHHHHHcCCCccCEEEEEeCCeeeEEEEee
Confidence 45556777888 9999999999999999999976 45666666688 9999999999999999999999874 8999
Q ss_pred CCCHHHHHHHHHHHHh
Q psy5680 147 NADQDVIQTLVSKLSQ 162 (201)
Q Consensus 147 ~~~~~~l~~~i~~~~~ 162 (201)
..+.+++.++|+..+.
T Consensus 97 ~~~~~~l~~~i~~~~~ 112 (215)
T TIGR02187 97 IPAGYEFAALIEDIVR 112 (215)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 9999999999998864
No 65
>KOG0912|consensus
Probab=99.61 E-value=2.2e-15 Score=120.37 Aligned_cols=105 Identities=17% Similarity=0.385 Sum_probs=93.5
Q ss_pred CHhHHHHHHhCCCcEEEEEECCCChhhHhhHHHHHHHHHh----CCC--eEEEEEECCCCchhHHHHCCCCcccEEEEEe
Q psy5680 63 KIDDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSET----TSG--VEFVKINVENGGGEIAREFEVQAVPTVIGFR 136 (201)
Q Consensus 63 ~~~~~~~~~~~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~----~~~--~~~~~vd~~~~~~~l~~~~~v~~~Pti~~~~ 136 (201)
+.++++.+++....|+|.|||+||+..+.+.|.+++.++. +|+ +.++.|||+.+ .+++.+|.|..|||+-+|+
T Consensus 2 t~~N~~~il~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e-~~ia~ky~I~KyPTlKvfr 80 (375)
T KOG0912|consen 2 TSENIDSILDSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKE-DDIADKYHINKYPTLKVFR 80 (375)
T ss_pred ccccHHHhhccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchh-hHHhhhhccccCceeeeee
Confidence 4567888887899999999999999999999999777654 664 99999999999 9999999999999999999
Q ss_pred CCeEEE-EEeCCCCHHHHHHHHHHHHhhhhhcc
Q psy5680 137 NGDPVD-MVVGNADQDVIQTLVSKLSQKLATHY 168 (201)
Q Consensus 137 ~G~~v~-~~~G~~~~~~l~~~i~~~~~~~~~~~ 168 (201)
+|..+. .|+|..+.+.|.++|++.+.....+.
T Consensus 81 nG~~~~rEYRg~RsVeaL~efi~kq~s~~i~Ef 113 (375)
T KOG0912|consen 81 NGEMMKREYRGQRSVEALIEFIEKQLSDPINEF 113 (375)
T ss_pred ccchhhhhhccchhHHHHHHHHHHHhccHHHHH
Confidence 999877 79999999999999999987665543
No 66
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.61 E-value=6.3e-15 Score=130.79 Aligned_cols=103 Identities=18% Similarity=0.405 Sum_probs=89.0
Q ss_pred EEEeCCHhHHHHHH----hCCCcEEEEEECCCChhhHhhHHHH---HHHHHhCCCeEEEEEECCCC---chhHHHHCCCC
Q psy5680 58 YLIIEKIDDFKQTI----RGRNPVLAYFFKPSCGFCKQLEPKI---STVSETTSGVEFVKINVENG---GGEIAREFEVQ 127 (201)
Q Consensus 58 v~~l~~~~~~~~~~----~~~~~vvv~f~a~wC~~C~~~~~~l---~~l~~~~~~~~~~~vd~~~~---~~~l~~~~~v~ 127 (201)
+.++++.+++++.+ .++++++|+|||+||++|+.+.+.. +++.+.++++.++++|++++ ..++.++|++.
T Consensus 454 ~~~i~s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~~~~v~vDvt~~~~~~~~l~~~~~v~ 533 (571)
T PRK00293 454 FQRIKTVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALADTVLLQADVTANNAEDVALLKHYNVL 533 (571)
T ss_pred ceecCCHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhcCCEEEEEECCCCChhhHHHHHHcCCC
Confidence 77887888898877 4579999999999999999998875 77888887889999999864 25789999999
Q ss_pred cccEEEEEe-CCeEE--EEEeCCCCHHHHHHHHHHH
Q psy5680 128 AVPTVIGFR-NGDPV--DMVVGNADQDVIQTLVSKL 160 (201)
Q Consensus 128 ~~Pti~~~~-~G~~v--~~~~G~~~~~~l~~~i~~~ 160 (201)
++||+++|+ +|+++ .++.|..+.+++.+++++.
T Consensus 534 g~Pt~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~~ 569 (571)
T PRK00293 534 GLPTILFFDAQGQEIPDARVTGFMDAAAFAAHLRQL 569 (571)
T ss_pred CCCEEEEECCCCCCcccccccCCCCHHHHHHHHHHh
Confidence 999999995 78874 6889999999999999875
No 67
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.59 E-value=3.1e-15 Score=106.69 Aligned_cols=100 Identities=23% Similarity=0.422 Sum_probs=74.4
Q ss_pred HhHHHHHHhCCCcEEEEEECCCChhhHhhHHHHHHHHHhCCC-eEEEEEECCCCchhHHHHCCCCc--ccEEEEE-eCCe
Q psy5680 64 IDDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENGGGEIAREFEVQA--VPTVIGF-RNGD 139 (201)
Q Consensus 64 ~~~~~~~~~~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~-~~~~~vd~~~~~~~l~~~~~v~~--~Pti~~~-~~G~ 139 (201)
.+.+..+..++++++|+|||+||++|+.+.+.+.+....... ..|+.+|++........+|++.+ +||+++| .+|+
T Consensus 9 ~~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~Gk 88 (117)
T cd02959 9 EDGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPSGD 88 (117)
T ss_pred HHHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCCCccceEEEECCCCC
Confidence 334444557899999999999999999999999887664432 56667777766124567899986 9999999 5998
Q ss_pred EEE---EEeCCCCHHHHHHHHHHHHhh
Q psy5680 140 PVD---MVVGNADQDVIQTLVSKLSQK 163 (201)
Q Consensus 140 ~v~---~~~G~~~~~~l~~~i~~~~~~ 163 (201)
++. ...|..+.+.+...|....+.
T Consensus 89 ~~~~~~~~~~~~~~~~f~~~~~~~~~~ 115 (117)
T cd02959 89 VHPEIINKKGNPNYKYFYSSAAQVTES 115 (117)
T ss_pred CchhhccCCCCccccccCCCHHHHHhh
Confidence 866 455667777777777666543
No 68
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.58 E-value=2.7e-14 Score=102.64 Aligned_cols=100 Identities=13% Similarity=0.182 Sum_probs=79.2
Q ss_pred CHhHHHHHHhCCCcEEEEEECCCChhhHhhHHHH---HHHHHhCC-CeEEEEEECCCCchhHHH--------HCCCCccc
Q psy5680 63 KIDDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKI---STVSETTS-GVEFVKINVENGGGEIAR--------EFEVQAVP 130 (201)
Q Consensus 63 ~~~~~~~~~~~~~~vvv~f~a~wC~~C~~~~~~l---~~l~~~~~-~~~~~~vd~~~~~~~l~~--------~~~v~~~P 130 (201)
+.+.+..+..++++++|+|+++||++|+.|.+.. .++++.+. ++.++.+|.++. +++.+ .|++.++|
T Consensus 4 ~~eal~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~-~~~~~~~~~~~~~~~~~~G~P 82 (124)
T cd02955 4 GEEAFEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREER-PDVDKIYMNAAQAMTGQGGWP 82 (124)
T ss_pred CHHHHHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcC-cHHHHHHHHHHHHhcCCCCCC
Confidence 5677888888999999999999999999998743 56777654 489999999988 87765 36899999
Q ss_pred EEEEE-eCCeEEEEEeCC-----CCHHHHHHHHHHHHhh
Q psy5680 131 TVIGF-RNGDPVDMVVGN-----ADQDVIQTLVSKLSQK 163 (201)
Q Consensus 131 ti~~~-~~G~~v~~~~G~-----~~~~~l~~~i~~~~~~ 163 (201)
+++++ .+|+.+....+. .+...+..++++..+.
T Consensus 83 t~vfl~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (124)
T cd02955 83 LNVFLTPDLKPFFGGTYFPPEDRYGRPGFKTVLEKIREL 121 (124)
T ss_pred EEEEECCCCCEEeeeeecCCCCcCCCcCHHHHHHHHHHH
Confidence 99999 788988766554 3445777777766544
No 69
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.58 E-value=3.4e-14 Score=109.24 Aligned_cols=93 Identities=19% Similarity=0.322 Sum_probs=77.2
Q ss_pred hCCCcEEEEEECCCChhhHhhHHHHHHHHHhCCCeEEEEEECCCC----------------------chhHHHHCCCCcc
Q psy5680 72 RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENG----------------------GGEIAREFEVQAV 129 (201)
Q Consensus 72 ~~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~----------------------~~~l~~~~~v~~~ 129 (201)
.++++++|+||++||++|+.+.|.+.++.++ ++.++.|+.++. +..+...|++.++
T Consensus 66 ~~gk~vvv~FwatwC~~C~~e~p~l~~l~~~--~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~ 143 (185)
T PRK15412 66 TQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ--GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGA 143 (185)
T ss_pred cCCCEEEEEEECCCCHHHHHHHHHHHHHHHc--CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCcC
Confidence 4689999999999999999999999999753 577788876544 0234557899999
Q ss_pred cEEEEE-eCCeEEEEEeCCCCHHHHHHHHHHHHhhhhh
Q psy5680 130 PTVIGF-RNGDPVDMVVGNADQDVIQTLVSKLSQKLAT 166 (201)
Q Consensus 130 Pti~~~-~~G~~v~~~~G~~~~~~l~~~i~~~~~~~~~ 166 (201)
|+.+++ ++|+++..+.|..+.+++.++|+..+.....
T Consensus 144 P~t~vid~~G~i~~~~~G~~~~~~l~~~i~~~~~~~~~ 181 (185)
T PRK15412 144 PETFLIDGNGIIRYRHAGDLNPRVWESEIKPLWEKYSK 181 (185)
T ss_pred CeEEEECCCceEEEEEecCCCHHHHHHHHHHHHHHHHh
Confidence 987777 7999999999999999999999998876543
No 70
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.58 E-value=1.1e-14 Score=125.86 Aligned_cols=101 Identities=22% Similarity=0.421 Sum_probs=89.8
Q ss_pred EEEeCCHhHHHHHH-hCCCcEEEEEECCCChhhHhhHHHHHHHHHhCCC----eEEEEEECCCCchhHHHHCCCCcccEE
Q psy5680 58 YLIIEKIDDFKQTI-RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG----VEFVKINVENGGGEIAREFEVQAVPTV 132 (201)
Q Consensus 58 v~~l~~~~~~~~~~-~~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~----~~~~~vd~~~~~~~l~~~~~v~~~Pti 132 (201)
+..+ +..+|.+.+ +.+++++|+||++||++|+.+.|.++++++.+.+ +.|+.+|++.+ ++.. +++.++|++
T Consensus 348 v~~l-~~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n--~~~~-~~i~~~Pt~ 423 (462)
T TIGR01130 348 VKVL-VGKNFDEIVLDETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAN--DVPP-FEVEGFPTI 423 (462)
T ss_pred cEEe-eCcCHHHHhccCCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCC--ccCC-CCccccCEE
Confidence 7889 999999998 7899999999999999999999999999999874 88999999987 4444 999999999
Q ss_pred EEEeCCeEE--EEEeCCCCHHHHHHHHHHHHh
Q psy5680 133 IGFRNGDPV--DMVVGNADQDVIQTLVSKLSQ 162 (201)
Q Consensus 133 ~~~~~G~~v--~~~~G~~~~~~l~~~i~~~~~ 162 (201)
++|++|+.. ..+.|..+.+.|.+||.+...
T Consensus 424 ~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~ 455 (462)
T TIGR01130 424 KFVPAGKKSEPVPYDGDRTLEDFSKFIAKHAT 455 (462)
T ss_pred EEEeCCCCcCceEecCcCCHHHHHHHHHhcCC
Confidence 999888653 578899999999999988763
No 71
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.56 E-value=4.4e-14 Score=111.10 Aligned_cols=93 Identities=13% Similarity=0.238 Sum_probs=77.3
Q ss_pred CHhHHHHHHhCCCc-EEEEEECCCChhhHhhHHHHHHHHHhCCCeEEEEEECCCCchhHHHHCCCCcccEEEEEeCCeEE
Q psy5680 63 KIDDFKQTIRGRNP-VLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTVIGFRNGDPV 141 (201)
Q Consensus 63 ~~~~~~~~~~~~~~-vvv~f~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~l~~~~~v~~~Pti~~~~~G~~v 141 (201)
+.+..+.+-..+++ +++.||++||++|+.+.+.+++++..++++.+..+|.+.+ ++++.+|+|.++||++++++|+.
T Consensus 121 ~~~~~~~l~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~-~~~~~~~~V~~vPtl~i~~~~~~- 198 (215)
T TIGR02187 121 SEKTVELLQSLDEPVRIEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEANEN-PDLAEKYGVMSVPKIVINKGVEE- 198 (215)
T ss_pred CHHHHHHHHhcCCCcEEEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCCC-HHHHHHhCCccCCEEEEecCCEE-
Confidence 34444443333445 4555999999999999999999999887799999999999 99999999999999999987753
Q ss_pred EEEeCCCCHHHHHHHHHH
Q psy5680 142 DMVVGNADQDVIQTLVSK 159 (201)
Q Consensus 142 ~~~~G~~~~~~l~~~i~~ 159 (201)
+.|..+.+++.++|.+
T Consensus 199 --~~G~~~~~~l~~~l~~ 214 (215)
T TIGR02187 199 --FVGAYPEEQFLEYILS 214 (215)
T ss_pred --EECCCCHHHHHHHHHh
Confidence 8898899999999875
No 72
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.56 E-value=1.2e-14 Score=102.41 Aligned_cols=86 Identities=21% Similarity=0.510 Sum_probs=66.8
Q ss_pred hCCCcEEEEEECCCChhhHhhHHHHHH---HHHhCCC-eEEEEEECCCC-------------------chhHHHHCCCCc
Q psy5680 72 RGRNPVLAYFFKPSCGFCKQLEPKIST---VSETTSG-VEFVKINVENG-------------------GGEIAREFEVQA 128 (201)
Q Consensus 72 ~~~~~vvv~f~a~wC~~C~~~~~~l~~---l~~~~~~-~~~~~vd~~~~-------------------~~~l~~~~~v~~ 128 (201)
.++++++++||++||++|+.+.+.+.+ +.+.+.+ +.++.++++.. ..++.++|+|.+
T Consensus 3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~g 82 (112)
T PF13098_consen 3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNG 82 (112)
T ss_dssp TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--S
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCc
Confidence 368999999999999999999998875 4555544 88888888754 135889999999
Q ss_pred ccEEEEE-eCCeEEEEEeCCCCHHHHHHHH
Q psy5680 129 VPTVIGF-RNGDPVDMVVGNADQDVIQTLV 157 (201)
Q Consensus 129 ~Pti~~~-~~G~~v~~~~G~~~~~~l~~~i 157 (201)
+||++++ .+|+.+.++.|..+.++|.++|
T Consensus 83 tPt~~~~d~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 83 TPTIVFLDKDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp SSEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred cCEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence 9999999 5899999999999999998875
No 73
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.54 E-value=9e-14 Score=103.48 Aligned_cols=88 Identities=15% Similarity=0.369 Sum_probs=68.6
Q ss_pred hCCCcEEEEEECCCChhhHhhHHHHHHHHHhCCCeEEEEEECCCC-----------chhHH-HHC---CCCcccEEEEE-
Q psy5680 72 RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENG-----------GGEIA-REF---EVQAVPTVIGF- 135 (201)
Q Consensus 72 ~~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~-----------~~~l~-~~~---~v~~~Pti~~~- 135 (201)
..++..+|+|||+||++|+++.|.+++++++++ +.++.|+++.. +.+.. ..| ++.++|+.+++
T Consensus 48 ~l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~-~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LID 126 (153)
T TIGR02738 48 NQDDYALVFFYQSTCPYCHQFAPVLKRFSQQFG-LPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLVN 126 (153)
T ss_pred hcCCCEEEEEECCCChhHHHHHHHHHHHHHHcC-CcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEEe
Confidence 346777999999999999999999999999984 56666666642 02232 345 78999999999
Q ss_pred eCCeE-EEEEeCCCCHHHHHHHHHHH
Q psy5680 136 RNGDP-VDMVVGNADQDVIQTLVSKL 160 (201)
Q Consensus 136 ~~G~~-v~~~~G~~~~~~l~~~i~~~ 160 (201)
++|+. +....|..+.+++.+.|.+.
T Consensus 127 ~~G~~i~~~~~G~~s~~~l~~~I~~l 152 (153)
T TIGR02738 127 VNTRKAYPVLQGAVDEAELANRMDEI 152 (153)
T ss_pred CCCCEEEEEeecccCHHHHHHHHHHh
Confidence 55665 55789999999998888765
No 74
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=99.53 E-value=2e-13 Score=98.37 Aligned_cols=107 Identities=10% Similarity=0.079 Sum_probs=95.0
Q ss_pred EEEeCCHhHHHHHHhCCCcEEEEEECC--CChhhHhhHHHHHHHHHhCC-C-eEEEEEECCCCchhHHHHCCCCcccEEE
Q psy5680 58 YLIIEKIDDFKQTIRGRNPVLAYFFKP--SCGFCKQLEPKISTVSETTS-G-VEFVKINVENGGGEIAREFEVQAVPTVI 133 (201)
Q Consensus 58 v~~l~~~~~~~~~~~~~~~vvv~f~a~--wC~~C~~~~~~l~~l~~~~~-~-~~~~~vd~~~~~~~l~~~~~v~~~Pti~ 133 (201)
+..+ +..+++.++...+..+++|-.+ -++.+....-.+++++++|+ + +.+++||+|++ ++++.+|+|.++||++
T Consensus 19 ~~~~-~~~~~~~~~~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~-~~LA~~fgV~siPTLl 96 (132)
T PRK11509 19 WTPV-SESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQS-EAIGDRFGVFRFPATL 96 (132)
T ss_pred CCcc-ccccHHHHHhCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCC-HHHHHHcCCccCCEEE
Confidence 5666 6788888887777777777765 47888899999999999998 4 99999999999 9999999999999999
Q ss_pred EEeCCeEEEEEeCCCCHHHHHHHHHHHHhhhhh
Q psy5680 134 GFRNGDPVDMVVGNADQDVIQTLVSKLSQKLAT 166 (201)
Q Consensus 134 ~~~~G~~v~~~~G~~~~~~l~~~i~~~~~~~~~ 166 (201)
+|++|+.+.++.|..+.+++.++|++++.....
T Consensus 97 ~FkdGk~v~~i~G~~~k~~l~~~I~~~L~~~~~ 129 (132)
T PRK11509 97 VFTGGNYRGVLNGIHPWAELINLMRGLVEPQQE 129 (132)
T ss_pred EEECCEEEEEEeCcCCHHHHHHHHHHHhcCcCc
Confidence 999999999999999999999999999876543
No 75
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.53 E-value=1e-13 Score=120.62 Aligned_cols=88 Identities=17% Similarity=0.399 Sum_probs=76.0
Q ss_pred hCCCcEEEEEECCCChhhHhhHHHHHHHHHhCC--CeEEEEEE----------------------------CCCCchhHH
Q psy5680 72 RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTS--GVEFVKIN----------------------------VENGGGEIA 121 (201)
Q Consensus 72 ~~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~--~~~~~~vd----------------------------~~~~~~~l~ 121 (201)
+++++++|+|||+||++|+.+.|.+++++++++ ++.++.|. +|.+ ..++
T Consensus 54 skGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~-~~la 132 (521)
T PRK14018 54 KKDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNG-GTLA 132 (521)
T ss_pred cCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceecccc-HHHH
Confidence 478999999999999999999999999999886 36555443 3444 6788
Q ss_pred HHCCCCcccEEEEE-eCCeEEEEEeCCCCHHHHHHHHHHH
Q psy5680 122 REFEVQAVPTVIGF-RNGDPVDMVVGNADQDVIQTLVSKL 160 (201)
Q Consensus 122 ~~~~v~~~Pti~~~-~~G~~v~~~~G~~~~~~l~~~i~~~ 160 (201)
+.|+|.++|+++++ ++|+++.++.|..+.++|..+|+..
T Consensus 133 k~fgV~giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie~~ 172 (521)
T PRK14018 133 QSLNISVYPSWAIIGKDGDVQRIVKGSISEAQALALIRNP 172 (521)
T ss_pred HHcCCCCcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHHHh
Confidence 99999999999777 7999999999999999999999854
No 76
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.53 E-value=1e-13 Score=99.96 Aligned_cols=79 Identities=20% Similarity=0.326 Sum_probs=65.9
Q ss_pred CCCcEEEEEECCCChhhHhhHHHHHHHHHhCCCeEEEEEEC-----------------------CCCchhHHHHCCCCcc
Q psy5680 73 GRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINV-----------------------ENGGGEIAREFEVQAV 129 (201)
Q Consensus 73 ~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vd~-----------------------~~~~~~l~~~~~v~~~ 129 (201)
++++++|+||++||++|+.+.|.++++.++++ +.++.|+. |.. ..+++.|++.++
T Consensus 24 ~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~~-~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~-~~~~~~~~v~~~ 101 (127)
T cd03010 24 KGKPYLLNVWASWCAPCREEHPVLMALARQGR-VPIYGINYKDNPENALAWLARHGNPYAAVGFDPD-GRVGIDLGVYGV 101 (127)
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHhcC-cEEEEEECCCCHHHHHHHHHhcCCCCceEEECCc-chHHHhcCCCCC
Confidence 68999999999999999999999999998873 56665553 344 677889999999
Q ss_pred cEEEEE-eCCeEEEEEeCCCCHHHH
Q psy5680 130 PTVIGF-RNGDPVDMVVGNADQDVI 153 (201)
Q Consensus 130 Pti~~~-~~G~~v~~~~G~~~~~~l 153 (201)
|+.+++ ++|+++.++.|..+.+.+
T Consensus 102 P~~~~ld~~G~v~~~~~G~~~~~~~ 126 (127)
T cd03010 102 PETFLIDGDGIIRYKHVGPLTPEVW 126 (127)
T ss_pred CeEEEECCCceEEEEEeccCChHhc
Confidence 976666 799999999998887654
No 77
>PHA02125 thioredoxin-like protein
Probab=99.53 E-value=1.6e-13 Score=90.19 Aligned_cols=71 Identities=20% Similarity=0.483 Sum_probs=59.0
Q ss_pred EEEEECCCChhhHhhHHHHHHHHHhCCCeEEEEEECCCCchhHHHHCCCCcccEEEEEeCCeEEEEEeCC-CCHHHHHHH
Q psy5680 78 LAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTVIGFRNGDPVDMVVGN-ADQDVIQTL 156 (201)
Q Consensus 78 vv~f~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~l~~~~~v~~~Pti~~~~~G~~v~~~~G~-~~~~~l~~~ 156 (201)
+++||++||++|+.+.|.++++. +.++.+|++++ ++++++|+|.++||++ +|+.+.++.|. .+..+|.+.
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~-----~~~~~vd~~~~-~~l~~~~~v~~~PT~~---~g~~~~~~~G~~~~~~~l~~~ 72 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE-----YTYVDVDTDEG-VELTAKHHIRSLPTLV---NTSTLDRFTGVPRNVAELKEK 72 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh-----heEEeeeCCCC-HHHHHHcCCceeCeEE---CCEEEEEEeCCCCcHHHHHHH
Confidence 78999999999999999997752 46889999999 9999999999999987 68888899995 233555544
Q ss_pred H
Q psy5680 157 V 157 (201)
Q Consensus 157 i 157 (201)
|
T Consensus 73 ~ 73 (75)
T PHA02125 73 L 73 (75)
T ss_pred h
Confidence 3
No 78
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.52 E-value=1.8e-13 Score=104.03 Aligned_cols=88 Identities=17% Similarity=0.299 Sum_probs=73.2
Q ss_pred hCCCcEEEEEECCCChhhHhhHHHHHHHHHhCCCeEEEEEECC-----------------------CCchhHHHHCCCCc
Q psy5680 72 RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVE-----------------------NGGGEIAREFEVQA 128 (201)
Q Consensus 72 ~~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~-----------------------~~~~~l~~~~~v~~ 128 (201)
.++++++|+||++||++|+.+.|.++++.++ ++.++.|+.+ .. ..+.+.|++.+
T Consensus 61 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~--~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~-~~~~~~~~v~~ 137 (173)
T TIGR00385 61 IQGKPVLLNVWASWCPPCRAEHPYLNELAKD--GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPN-GKLGLDLGVYG 137 (173)
T ss_pred cCCCEEEEEEECCcCHHHHHHHHHHHHHHHc--CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCC-CchHHhcCCee
Confidence 4689999999999999999999999999764 3555555543 22 45677899999
Q ss_pred ccEEEEE-eCCeEEEEEeCCCCHHHHHHHHHHHHh
Q psy5680 129 VPTVIGF-RNGDPVDMVVGNADQDVIQTLVSKLSQ 162 (201)
Q Consensus 129 ~Pti~~~-~~G~~v~~~~G~~~~~~l~~~i~~~~~ 162 (201)
+|+.+++ ++|+++.++.|..+.+++.++|.++++
T Consensus 138 ~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~~~ 172 (173)
T TIGR00385 138 APETFLVDGNGVILYRHAGPLNNEVWTEGFLPAME 172 (173)
T ss_pred CCeEEEEcCCceEEEEEeccCCHHHHHHHHHHHhh
Confidence 9987777 799999999999999999999998874
No 79
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.50 E-value=2.5e-13 Score=89.45 Aligned_cols=72 Identities=22% Similarity=0.381 Sum_probs=59.9
Q ss_pred EEEEECCCChhhHhhHHHHHHHHHhCCC-eEEEEEECCCCchhHHHHCCCCcccEEEEEeCCeEEEEEeCC-CCHHHHHH
Q psy5680 78 LAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENGGGEIAREFEVQAVPTVIGFRNGDPVDMVVGN-ADQDVIQT 155 (201)
Q Consensus 78 vv~f~a~wC~~C~~~~~~l~~l~~~~~~-~~~~~vd~~~~~~~l~~~~~v~~~Pti~~~~~G~~v~~~~G~-~~~~~l~~ 155 (201)
.|.||++||++|+.+.|.+++++++++. +.++.+| . .+.+.+|++.++|++++ +|+.+ +.|. .+.+++.+
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~---~-~~~a~~~~v~~vPti~i--~G~~~--~~G~~~~~~~l~~ 73 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVT---D-MNEILEAGVTATPGVAV--DGELV--IMGKIPSKEEIKE 73 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeC---C-HHHHHHcCCCcCCEEEE--CCEEE--EEeccCCHHHHHH
Confidence 3789999999999999999999999976 7887776 3 45678999999999999 88876 7774 45577777
Q ss_pred HH
Q psy5680 156 LV 157 (201)
Q Consensus 156 ~i 157 (201)
++
T Consensus 74 ~l 75 (76)
T TIGR00412 74 IL 75 (76)
T ss_pred Hh
Confidence 65
No 80
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.50 E-value=4.6e-13 Score=101.39 Aligned_cols=102 Identities=17% Similarity=0.355 Sum_probs=83.3
Q ss_pred EEEeCCHhHHHHHHhCCCcEEEEEECCCChhhHhhHHHHHHHHHhCCC--eEEEEEECCCC-------------------
Q psy5680 58 YLIIEKIDDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG--VEFVKINVENG------------------- 116 (201)
Q Consensus 58 v~~l~~~~~~~~~~~~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~--~~~~~vd~~~~------------------- 116 (201)
+..+ +++.+.-.-.++++++|+||++||++|+...+.+.++++++++ +.++.++++..
T Consensus 46 ~~~~-~g~~~~l~~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~ 124 (173)
T PRK03147 46 LTDL-EGKKIELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAI 124 (173)
T ss_pred eecC-CCCEEeHHHcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEE
Confidence 5555 5554432223678999999999999999999999999999875 88888887633
Q ss_pred --chhHHHHCCCCcccEEEEE-eCCeEEEEEeCCCCHHHHHHHHHHH
Q psy5680 117 --GGEIAREFEVQAVPTVIGF-RNGDPVDMVVGNADQDVIQTLVSKL 160 (201)
Q Consensus 117 --~~~l~~~~~v~~~Pti~~~-~~G~~v~~~~G~~~~~~l~~~i~~~ 160 (201)
+.++.++|++..+|+++++ ++|+.+..+.|..+.+++.+++++.
T Consensus 125 d~~~~~~~~~~v~~~P~~~lid~~g~i~~~~~g~~~~~~l~~~l~~~ 171 (173)
T PRK03147 125 DKGRQVIDAYGVGPLPTTFLIDKDGKVVKVITGEMTEEQLEEYLEKI 171 (173)
T ss_pred CCcchHHHHcCCCCcCeEEEECCCCcEEEEEeCCCCHHHHHHHHHHh
Confidence 1577899999999998888 6888888899999999999988764
No 81
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.49 E-value=4.7e-13 Score=108.57 Aligned_cols=89 Identities=19% Similarity=0.431 Sum_probs=74.2
Q ss_pred CCCcEEEEEECCCChhhHhhHHHHHHHHHhCCCeEEEEEECCCC----------chhHHHHCCCCcccEEEEEeC-CeEE
Q psy5680 73 GRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENG----------GGEIAREFEVQAVPTVIGFRN-GDPV 141 (201)
Q Consensus 73 ~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~----------~~~l~~~~~v~~~Pti~~~~~-G~~v 141 (201)
.+++++|+||++||++|+.+.|.+++++++++ +.++.|++|.. +..++++|+|.++|+++++++ |+.+
T Consensus 165 ~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg-~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~~~~v 243 (271)
T TIGR02740 165 AKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG-IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPDPNQF 243 (271)
T ss_pred cCCeEEEEEECCCCccHHHHhHHHHHHHHHcC-cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECCCCEE
Confidence 58899999999999999999999999999995 66666676652 157889999999999999965 5554
Q ss_pred -EEEeCCCCHHHHHHHHHHHHh
Q psy5680 142 -DMVVGNADQDVIQTLVSKLSQ 162 (201)
Q Consensus 142 -~~~~G~~~~~~l~~~i~~~~~ 162 (201)
....|..+.++|.+.|.....
T Consensus 244 ~~v~~G~~s~~eL~~~i~~~a~ 265 (271)
T TIGR02740 244 TPIGFGVMSADELVDRILLAAH 265 (271)
T ss_pred EEEEeCCCCHHHHHHHHHHHhc
Confidence 456799999999999887654
No 82
>KOG0191|consensus
Probab=99.47 E-value=3.3e-13 Score=114.78 Aligned_cols=104 Identities=21% Similarity=0.468 Sum_probs=91.1
Q ss_pred HhHHHHHH-hCCCcEEEEEECCCChhhHhhHHHHHHHHHhCCC-eEEEEEECCCCchhHHHHCCCCcccEEEEEeCCeEE
Q psy5680 64 IDDFKQTI-RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENGGGEIAREFEVQAVPTVIGFRNGDPV 141 (201)
Q Consensus 64 ~~~~~~~~-~~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~-~~~~~vd~~~~~~~l~~~~~v~~~Pti~~~~~G~~v 141 (201)
...|.... ..+++++|+||+|||++|+.+.|.+.++++.+.+ +.++.||++.+ +++|++|+|.++||+.+|..|...
T Consensus 36 ~~~~~~~~~~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~-~~~~~~y~i~gfPtl~~f~~~~~~ 114 (383)
T KOG0191|consen 36 LDSFFDFLLKDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEH-KDLCEKYGIQGFPTLKVFRPGKKP 114 (383)
T ss_pred ccccHHHhhccCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhh-HHHHHhcCCccCcEEEEEcCCCce
Confidence 34444444 7899999999999999999999999999999998 99999999999 999999999999999999888556
Q ss_pred EEEeCCCCHHHHHHHHHHHHhhhhhcc
Q psy5680 142 DMVVGNADQDVIQTLVSKLSQKLATHY 168 (201)
Q Consensus 142 ~~~~G~~~~~~l~~~i~~~~~~~~~~~ 168 (201)
..+.|..+.+.+..++.+.+.......
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (383)
T KOG0191|consen 115 IDYSGPRNAESLAEFLIKELEPSVKKL 141 (383)
T ss_pred eeccCcccHHHHHHHHHHhhccccccc
Confidence 688888999999999988876654433
No 83
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.47 E-value=3.2e-13 Score=99.54 Aligned_cols=71 Identities=20% Similarity=0.399 Sum_probs=58.9
Q ss_pred CCCcEEEEEECCCChhhHhhHHHHHHHHHhCC---------CeEEEEEECCCC------------------------chh
Q psy5680 73 GRNPVLAYFFKPSCGFCKQLEPKISTVSETTS---------GVEFVKINVENG------------------------GGE 119 (201)
Q Consensus 73 ~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~---------~~~~~~vd~~~~------------------------~~~ 119 (201)
++++++|+|||+||++|+.+.|.|.++++++. ++.++.|+.+.. ...
T Consensus 24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~ 103 (146)
T cd03008 24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRE 103 (146)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHH
Confidence 78999999999999999999999999876442 388888888765 125
Q ss_pred HHHHCCCCcccEEEEE-eCCeEEEE
Q psy5680 120 IAREFEVQAVPTVIGF-RNGDPVDM 143 (201)
Q Consensus 120 l~~~~~v~~~Pti~~~-~~G~~v~~ 143 (201)
+..+|++.++|+++++ ++|+++.+
T Consensus 104 l~~~y~v~~iPt~vlId~~G~Vv~~ 128 (146)
T cd03008 104 LEAQFSVEELPTVVVLKPDGDVLAA 128 (146)
T ss_pred HHHHcCCCCCCEEEEECCCCcEEee
Confidence 7789999999999999 68877643
No 84
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.45 E-value=6.7e-13 Score=94.97 Aligned_cols=96 Identities=18% Similarity=0.316 Sum_probs=72.9
Q ss_pred EEEeCCHhHHHHHHhCCCcEEEEEECCCChhhHhhHHHHHHHHHhCCCeEEEEEE---------------------CCCC
Q psy5680 58 YLIIEKIDDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKIN---------------------VENG 116 (201)
Q Consensus 58 v~~l~~~~~~~~~~~~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vd---------------------~~~~ 116 (201)
+..+ +++.+.....++++++|+||++||++|+.+.+.+.++++.+.- ..+.+| .+.+
T Consensus 5 l~~~-~g~~~~~~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~~-i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 82 (123)
T cd03011 5 ATTL-DGEQFDLESLSGKPVLVYFWATWCPVCRFTSPTVNQLAADYPV-VSVALRSGDDGAVARFMQKKGYGFPVINDPD 82 (123)
T ss_pred eecC-CCCEeeHHHhCCCEEEEEEECCcChhhhhhChHHHHHHhhCCE-EEEEccCCCHHHHHHHHHHcCCCccEEECCC
Confidence 5555 4455555444679999999999999999999999999887532 212222 1344
Q ss_pred chhHHHHCCCCcccEEEEEeCCeEEEEEeCCCCHHHHHHH
Q psy5680 117 GGEIAREFEVQAVPTVIGFRNGDPVDMVVGNADQDVIQTL 156 (201)
Q Consensus 117 ~~~l~~~~~v~~~Pti~~~~~G~~v~~~~G~~~~~~l~~~ 156 (201)
.+++++|++.++|+++++.+|++..++.|..+.+++.+.
T Consensus 83 -~~~~~~~~i~~~P~~~vid~~gi~~~~~g~~~~~~~~~~ 121 (123)
T cd03011 83 -GVISARWGVSVTPAIVIVDPGGIVFVTTGVTSEWGLRLR 121 (123)
T ss_pred -cHHHHhCCCCcccEEEEEcCCCeEEEEeccCCHHHHHhh
Confidence 679999999999999999655587899999999988754
No 85
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.44 E-value=7.7e-13 Score=90.49 Aligned_cols=66 Identities=27% Similarity=0.630 Sum_probs=55.6
Q ss_pred CCcEEEEEECCCChhhHhhHHHHHHHHHhCC--C-eEEEEEECCCC------------------------chhHHHHCCC
Q psy5680 74 RNPVLAYFFKPSCGFCKQLEPKISTVSETTS--G-VEFVKINVENG------------------------GGEIAREFEV 126 (201)
Q Consensus 74 ~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~--~-~~~~~vd~~~~------------------------~~~l~~~~~v 126 (201)
+++++|+|||+||++|+.+.|.+.++.++++ + +.++.|..++. ...+.+.|+|
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i 80 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGI 80 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCC
Confidence 5899999999999999999999999999999 3 99999999866 1467889999
Q ss_pred CcccEEEEE-eCCe
Q psy5680 127 QAVPTVIGF-RNGD 139 (201)
Q Consensus 127 ~~~Pti~~~-~~G~ 139 (201)
.++|+++++ ++|+
T Consensus 81 ~~iP~~~lld~~G~ 94 (95)
T PF13905_consen 81 NGIPTLVLLDPDGK 94 (95)
T ss_dssp TSSSEEEEEETTSB
T ss_pred CcCCEEEEECCCCC
Confidence 999999999 5564
No 86
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.43 E-value=9.4e-13 Score=84.36 Aligned_cols=61 Identities=20% Similarity=0.452 Sum_probs=55.3
Q ss_pred EEEEEECCCChhhHhhHHHHHHHHHhCCCeEEEEEECCCCchhHHHHCCCCcccEEEEEeCCeE
Q psy5680 77 VLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTVIGFRNGDP 140 (201)
Q Consensus 77 vvv~f~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~l~~~~~v~~~Pti~~~~~G~~ 140 (201)
-++.|+++||++|+.+.+.+++++..++++.+..+|++++ ++++++|++.++|++++ +|+.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~~-~~l~~~~~i~~vPti~i--~~~~ 62 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAAEF-PDLADEYGVMSVPAIVI--NGKV 62 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEcccC-HhHHHHcCCcccCEEEE--CCEE
Confidence 4789999999999999999999988887799999999999 99999999999999876 5654
No 87
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.42 E-value=1.9e-12 Score=121.98 Aligned_cols=93 Identities=18% Similarity=0.280 Sum_probs=80.3
Q ss_pred CCCcEEEEEECCCChhhHhhHHHHHHHHHhCCC--eEEEEEEC---C------------------------CCchhHHHH
Q psy5680 73 GRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG--VEFVKINV---E------------------------NGGGEIARE 123 (201)
Q Consensus 73 ~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~--~~~~~vd~---~------------------------~~~~~l~~~ 123 (201)
++++++|+|||+||++|+.+.|.|++++++|++ +.++.|.. + .. ..+.++
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~-~~~~~~ 497 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGD-MYLWRE 497 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCc-hHHHHh
Confidence 689999999999999999999999999999976 77777742 2 12 467789
Q ss_pred CCCCcccEEEEE-eCCeEEEEEeCCCCHHHHHHHHHHHHhhhhh
Q psy5680 124 FEVQAVPTVIGF-RNGDPVDMVVGNADQDVIQTLVSKLSQKLAT 166 (201)
Q Consensus 124 ~~v~~~Pti~~~-~~G~~v~~~~G~~~~~~l~~~i~~~~~~~~~ 166 (201)
|+|.++|+++++ ++|+++.++.|....+++.++|+.++.-...
T Consensus 498 ~~V~~iPt~ilid~~G~iv~~~~G~~~~~~l~~~l~~~l~~~~~ 541 (1057)
T PLN02919 498 LGVSSWPTFAVVSPNGKLIAQLSGEGHRKDLDDLVEAALQYYGE 541 (1057)
T ss_pred cCCCccceEEEECCCCeEEEEEecccCHHHHHHHHHHHHHhhcc
Confidence 999999999999 7999999999999999999999998764433
No 88
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.41 E-value=3.9e-12 Score=96.59 Aligned_cols=85 Identities=15% Similarity=0.296 Sum_probs=70.4
Q ss_pred EEEEECCCChhhHhhHHHHHHHHHhCCCeEEEEEECCCC------------chhHHHHCCC--CcccEEEEE-eCCeEE-
Q psy5680 78 LAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENG------------GGEIAREFEV--QAVPTVIGF-RNGDPV- 141 (201)
Q Consensus 78 vv~f~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~------------~~~l~~~~~v--~~~Pti~~~-~~G~~v- 141 (201)
+|+||++||++|+++.|.+++++++++ +.++.|+++.. ...+...|++ .++|+.+++ ++|+++
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g-~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~~ 151 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYG-FSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEAL 151 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcC-CEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEEE
Confidence 778999999999999999999999994 66666666633 0236678995 699999999 788876
Q ss_pred EEEeCCCCHHHHHHHHHHHHhh
Q psy5680 142 DMVVGNADQDVIQTLVSKLSQK 163 (201)
Q Consensus 142 ~~~~G~~~~~~l~~~i~~~~~~ 163 (201)
..+.|..+.+++.+.+.+.+.-
T Consensus 152 ~~~~G~~~~~~L~~~I~~ll~~ 173 (181)
T PRK13728 152 PLLQGATDAAGFMARMDTVLQM 173 (181)
T ss_pred EEEECCCCHHHHHHHHHHHHhh
Confidence 4799999999999999888755
No 89
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=99.41 E-value=2.8e-12 Score=86.97 Aligned_cols=77 Identities=16% Similarity=0.222 Sum_probs=66.7
Q ss_pred CCCcEEEEEECCCChhhHhhHHHHHHHHHhCCCeEEEEEECCCCchhHHHHCCCCcccEEEEEeCCeEEEEEeCCCCHHH
Q psy5680 73 GRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTVIGFRNGDPVDMVVGNADQDV 152 (201)
Q Consensus 73 ~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~l~~~~~v~~~Pti~~~~~G~~v~~~~G~~~~~~ 152 (201)
.+...+..|+++||++|....+.++++++.++++.+..+|.++. ++++++|+|.++|++++ +|+.+. .|..+.++
T Consensus 11 ~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~-~e~a~~~~V~~vPt~vi--dG~~~~--~G~~~~~e 85 (89)
T cd03026 11 NGPINFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGALF-QDEVEERGIMSVPAIFL--NGELFG--FGRMTLEE 85 (89)
T ss_pred CCCEEEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhHhC-HHHHHHcCCccCCEEEE--CCEEEE--eCCCCHHH
Confidence 45557889999999999999999999999998899999999999 99999999999999975 787755 47666666
Q ss_pred HH
Q psy5680 153 IQ 154 (201)
Q Consensus 153 l~ 154 (201)
+.
T Consensus 86 ~~ 87 (89)
T cd03026 86 IL 87 (89)
T ss_pred Hh
Confidence 54
No 90
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=99.40 E-value=5.3e-12 Score=89.47 Aligned_cols=94 Identities=13% Similarity=0.233 Sum_probs=78.8
Q ss_pred HHHhCCCcEEEEEECCCChhhHhhHHHH---HHHHHhCCC-eEEEEEECCCC-chhHHHHCCCCcccEEEEE-e-CCeEE
Q psy5680 69 QTIRGRNPVLAYFFKPSCGFCKQLEPKI---STVSETTSG-VEFVKINVENG-GGEIAREFEVQAVPTVIGF-R-NGDPV 141 (201)
Q Consensus 69 ~~~~~~~~vvv~f~a~wC~~C~~~~~~l---~~l~~~~~~-~~~~~vd~~~~-~~~l~~~~~v~~~Pti~~~-~-~G~~v 141 (201)
.+..++++++|+|+++||++|+.+.... +++.+.+.. ..++.+|+++. ...++..|++.++|+++++ . +|+.+
T Consensus 12 ~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~g~~l 91 (114)
T cd02958 12 EAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRTGEVL 91 (114)
T ss_pred HHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCccCcEe
Confidence 3337899999999999999999998754 666666654 77888888742 2678999999999999999 4 68999
Q ss_pred EEEeCCCCHHHHHHHHHHHHh
Q psy5680 142 DMVVGNADQDVIQTLVSKLSQ 162 (201)
Q Consensus 142 ~~~~G~~~~~~l~~~i~~~~~ 162 (201)
.+..|..+.+++...|+++..
T Consensus 92 ~~~~G~~~~~~f~~~L~~~~~ 112 (114)
T cd02958 92 KVWSGNITPEDLLSQLIEFLE 112 (114)
T ss_pred EEEcCCCCHHHHHHHHHHHHh
Confidence 999999999999999998764
No 91
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.40 E-value=2e-12 Score=93.99 Aligned_cols=71 Identities=24% Similarity=0.463 Sum_probs=57.6
Q ss_pred CCCcEEEEEECCCChhhHhhHHHHHHHHHhCC----CeEEEEEECCCCc------------------------hhHHHHC
Q psy5680 73 GRNPVLAYFFKPSCGFCKQLEPKISTVSETTS----GVEFVKINVENGG------------------------GEIAREF 124 (201)
Q Consensus 73 ~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~----~~~~~~vd~~~~~------------------------~~l~~~~ 124 (201)
++++++|+||++||++|+.+.|.++++++++. ++.++.|+++... ..+.+.|
T Consensus 16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 95 (132)
T cd02964 16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQF 95 (132)
T ss_pred CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHc
Confidence 78999999999999999999999999887765 3777778777540 1456679
Q ss_pred CCCcccEEEEE-eCCeEEEE
Q psy5680 125 EVQAVPTVIGF-RNGDPVDM 143 (201)
Q Consensus 125 ~v~~~Pti~~~-~~G~~v~~ 143 (201)
+|.++|+++++ ++|+++.+
T Consensus 96 ~v~~iPt~~lid~~G~iv~~ 115 (132)
T cd02964 96 KVEGIPTLVVLKPDGDVVTT 115 (132)
T ss_pred CCCCCCEEEEECCCCCEEch
Confidence 99999999999 57776543
No 92
>KOG1731|consensus
Probab=99.40 E-value=2e-13 Score=117.27 Aligned_cols=105 Identities=19% Similarity=0.383 Sum_probs=85.8
Q ss_pred EEEeCCHhHHHHHH-hCCCcEEEEEECCCChhhHhhHHHHHHHHHhCCC----eEEEEEECC--CCchhHHHHCCCCccc
Q psy5680 58 YLIIEKIDDFKQTI-RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG----VEFVKINVE--NGGGEIAREFEVQAVP 130 (201)
Q Consensus 58 v~~l~~~~~~~~~~-~~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~----~~~~~vd~~--~~~~~l~~~~~v~~~P 130 (201)
+..| +.++|..++ .+.+..+|.||++|||+|+++.|.++++++.... +.++.|||. .| ..+|+.|+|..+|
T Consensus 41 ii~L-d~~tf~~~v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N-~~lCRef~V~~~P 118 (606)
T KOG1731|consen 41 IIEL-DVDTFNAAVFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEEN-VKLCREFSVSGYP 118 (606)
T ss_pred eEEe-ehhhhHHHhcccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhh-hhhHhhcCCCCCc
Confidence 8999 999999999 6667999999999999999999999999988654 889999986 45 8999999999999
Q ss_pred EEEEEeCCeEE----EEEeCCCCHHHHHHHHHHHHhhh
Q psy5680 131 TVIGFRNGDPV----DMVVGNADQDVIQTLVSKLSQKL 164 (201)
Q Consensus 131 ti~~~~~G~~v----~~~~G~~~~~~l~~~i~~~~~~~ 164 (201)
++.+|+.+-.- ..+.|.....++...+.+.+...
T Consensus 119 tlryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~~la~~ 156 (606)
T KOG1731|consen 119 TLRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIRTLAEE 156 (606)
T ss_pred eeeecCCccccCcCCCcccCCcchhhHHHHHHHHHHHH
Confidence 99999544221 24556566677777776665443
No 93
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=99.37 E-value=2.2e-12 Score=111.95 Aligned_cols=103 Identities=19% Similarity=0.356 Sum_probs=87.5
Q ss_pred EEeCCHhHHHHHHhCC--CcEEEEEECCCChhhHhhHHHH---HHHHHhCCCeEEEEEECCCCc---hhHHHHCCCCccc
Q psy5680 59 LIIEKIDDFKQTIRGR--NPVLAYFFKPSCGFCKQLEPKI---STVSETTSGVEFVKINVENGG---GEIAREFEVQAVP 130 (201)
Q Consensus 59 ~~l~~~~~~~~~~~~~--~~vvv~f~a~wC~~C~~~~~~l---~~l~~~~~~~~~~~vd~~~~~---~~l~~~~~v~~~P 130 (201)
..+++.+++++++.++ ++|+++|||+||-.|+.+++.. .+++.+.+++.+.++|+++++ .++.++|++-++|
T Consensus 457 q~~s~~~~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lLk~~~~~G~P 536 (569)
T COG4232 457 QPISPLAELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALLKRLGVFGVP 536 (569)
T ss_pred hccCCHHHHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHHHHcCCCCCC
Confidence 6774556999999444 4999999999999999999865 566777888999999999885 4567899999999
Q ss_pred EEEEEe-CCeEEEEEeCCCCHHHHHHHHHHHH
Q psy5680 131 TVIGFR-NGDPVDMVVGNADQDVIQTLVSKLS 161 (201)
Q Consensus 131 ti~~~~-~G~~v~~~~G~~~~~~l~~~i~~~~ 161 (201)
++++|. +|++.....|+++.+.+.+++++..
T Consensus 537 ~~~ff~~~g~e~~~l~gf~~a~~~~~~l~~~~ 568 (569)
T COG4232 537 TYLFFGPQGSEPEILTGFLTADAFLEHLERAA 568 (569)
T ss_pred EEEEECCCCCcCcCCcceecHHHHHHHHHHhc
Confidence 999995 8877777999999999999998763
No 94
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.36 E-value=4e-12 Score=92.11 Aligned_cols=71 Identities=25% Similarity=0.472 Sum_probs=58.2
Q ss_pred CCCcEEEEEECCCChhhHhhHHHHHHHHHhCC----CeEEEEEECCCCc-----------------------hhHHHHCC
Q psy5680 73 GRNPVLAYFFKPSCGFCKQLEPKISTVSETTS----GVEFVKINVENGG-----------------------GEIAREFE 125 (201)
Q Consensus 73 ~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~----~~~~~~vd~~~~~-----------------------~~l~~~~~ 125 (201)
++++++|+||++||++|+.+.|.+.++++++. ++.++.++++... ..++++|+
T Consensus 17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (131)
T cd03009 17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFK 96 (131)
T ss_pred CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcC
Confidence 68999999999999999999999998887764 4777777776440 34678999
Q ss_pred CCcccEEEEE-eCCeEEEE
Q psy5680 126 VQAVPTVIGF-RNGDPVDM 143 (201)
Q Consensus 126 v~~~Pti~~~-~~G~~v~~ 143 (201)
+.++|+++++ ++|+++.+
T Consensus 97 v~~~P~~~lid~~G~i~~~ 115 (131)
T cd03009 97 IEGIPTLIILDADGEVVTT 115 (131)
T ss_pred CCCCCEEEEECCCCCEEcc
Confidence 9999999999 58877643
No 95
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.35 E-value=5.4e-12 Score=87.96 Aligned_cols=74 Identities=30% Similarity=0.557 Sum_probs=64.8
Q ss_pred CCCcEEEEEECCCChhhHhhHHHHHHHHHhCC--CeEEEEEECCCC----------------------chhHHHHCCCCc
Q psy5680 73 GRNPVLAYFFKPSCGFCKQLEPKISTVSETTS--GVEFVKINVENG----------------------GGEIAREFEVQA 128 (201)
Q Consensus 73 ~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~--~~~~~~vd~~~~----------------------~~~l~~~~~v~~ 128 (201)
.+++++++||++||++|+...+.+.++.+++. ++.++.|+++.. +..+.+.|++.+
T Consensus 18 ~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (116)
T cd02966 18 KGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVRG 97 (116)
T ss_pred CCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcCc
Confidence 48899999999999999999999999999995 499999999872 157889999999
Q ss_pred ccEEEEE-eCCeEEEEEeC
Q psy5680 129 VPTVIGF-RNGDPVDMVVG 146 (201)
Q Consensus 129 ~Pti~~~-~~G~~v~~~~G 146 (201)
+|+++++ ++|+++.++.|
T Consensus 98 ~P~~~l~d~~g~v~~~~~g 116 (116)
T cd02966 98 LPTTFLIDRDGRIRARHVG 116 (116)
T ss_pred cceEEEECCCCcEEEEecC
Confidence 9999999 68888877765
No 96
>KOG0191|consensus
Probab=99.34 E-value=4.9e-12 Score=107.61 Aligned_cols=105 Identities=28% Similarity=0.469 Sum_probs=95.5
Q ss_pred EEEeCCHhHHHHHH-hCCCcEEEEEECCCChhhHhhHHHHHHHHHhCC--C-eEEEEEECCCCchhHHHHCCCCcccEEE
Q psy5680 58 YLIIEKIDDFKQTI-RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTS--G-VEFVKINVENGGGEIAREFEVQAVPTVI 133 (201)
Q Consensus 58 v~~l~~~~~~~~~~-~~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~--~-~~~~~vd~~~~~~~l~~~~~v~~~Pti~ 133 (201)
+.++ +..+|+..+ ..+..++|.||+|||++|+.+.|.+.++++.+. . +.++.+|++.. ..++.+++|..+||+.
T Consensus 146 v~~l-~~~~~~~~~~~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~-~~~~~~~~v~~~Pt~~ 223 (383)
T KOG0191|consen 146 VFEL-TKDNFDETVKDSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVH-KSLASRLEVRGYPTLK 223 (383)
T ss_pred eEEc-cccchhhhhhccCcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccchH-HHHhhhhcccCCceEE
Confidence 7788 888888877 788999999999999999999999999999885 3 99999999977 8999999999999999
Q ss_pred EEeCCeE-EEEEeCCCCHHHHHHHHHHHHhhh
Q psy5680 134 GFRNGDP-VDMVVGNADQDVIQTLVSKLSQKL 164 (201)
Q Consensus 134 ~~~~G~~-v~~~~G~~~~~~l~~~i~~~~~~~ 164 (201)
+|++|.. ...+.|..+.+.+..|+++.....
T Consensus 224 ~f~~~~~~~~~~~~~R~~~~i~~~v~~~~~~~ 255 (383)
T KOG0191|consen 224 LFPPGEEDIYYYSGLRDSDSIVSFVEKKERRN 255 (383)
T ss_pred EecCCCcccccccccccHHHHHHHHHhhcCCC
Confidence 9988888 778889899999999999988774
No 97
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.33 E-value=1.2e-11 Score=89.19 Aligned_cols=75 Identities=15% Similarity=0.228 Sum_probs=63.5
Q ss_pred CCCcEEEEEECCCChhhHhhHHHHHHHHHhCCC--eEEEEEECCC-----C---------------------chhHHHHC
Q psy5680 73 GRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG--VEFVKINVEN-----G---------------------GGEIAREF 124 (201)
Q Consensus 73 ~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~--~~~~~vd~~~-----~---------------------~~~l~~~~ 124 (201)
++++++|+||++||++|....|.++++++++++ +.++.|+.+. . +..+.+.|
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~ 101 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRAY 101 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHHh
Confidence 689999999999999999999999999999985 7887776521 1 14567889
Q ss_pred CCCcccEEEEE-eCCeEEEEEeCC
Q psy5680 125 EVQAVPTVIGF-RNGDPVDMVVGN 147 (201)
Q Consensus 125 ~v~~~Pti~~~-~~G~~v~~~~G~ 147 (201)
++..+|+.+++ ++|+++..+.|.
T Consensus 102 ~v~~~P~~~vid~~G~v~~~~~G~ 125 (126)
T cd03012 102 GNQYWPALYLIDPTGNVRHVHFGE 125 (126)
T ss_pred CCCcCCeEEEECCCCcEEEEEecC
Confidence 99999999999 689998888873
No 98
>PTZ00056 glutathione peroxidase; Provisional
Probab=99.33 E-value=1.1e-11 Score=96.29 Aligned_cols=93 Identities=9% Similarity=0.138 Sum_probs=72.0
Q ss_pred CCCcEEEEEECCCChhhHhhHHHHHHHHHhCCC--eEEEEEECCC-------C---chhHHHHCCC--------------
Q psy5680 73 GRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG--VEFVKINVEN-------G---GGEIAREFEV-------------- 126 (201)
Q Consensus 73 ~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~--~~~~~vd~~~-------~---~~~l~~~~~v-------------- 126 (201)
++++++|.|||+||++|+...|.+++++++|.+ +.++.|+++. . -..+++++++
T Consensus 38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~~~fpvl~d~~v~g~~ 117 (199)
T PTZ00056 38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKDIRKFNDKNKIKYNFFEPIEVNGEN 117 (199)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHHHHHHHHHHcCCCceeeeeeeccCCc
Confidence 689999999999999999999999999999975 8999998742 1 0223333332
Q ss_pred ----------------------Cccc---EEEEE-eCCeEEEEEeCCCCHHHHHHHHHHHHhhhh
Q psy5680 127 ----------------------QAVP---TVIGF-RNGDPVDMVVGNADQDVIQTLVSKLSQKLA 165 (201)
Q Consensus 127 ----------------------~~~P---ti~~~-~~G~~v~~~~G~~~~~~l~~~i~~~~~~~~ 165 (201)
..+| +.+++ ++|+++.++.|..+.+++.+.|++++....
T Consensus 118 ~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~g~~~~~~l~~~I~~ll~~~~ 182 (199)
T PTZ00056 118 THELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFSPRTEPLELEKKIAELLGVKD 182 (199)
T ss_pred cCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 1222 45555 899999999998999999999998886653
No 99
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.32 E-value=1.3e-11 Score=90.90 Aligned_cols=77 Identities=23% Similarity=0.473 Sum_probs=66.1
Q ss_pred CCCcEEEEEECC-CChhhHhhHHHHHHHHHhCCC--eEEEEEECCCC--------------------chhHHHHCCCC--
Q psy5680 73 GRNPVLAYFFKP-SCGFCKQLEPKISTVSETTSG--VEFVKINVENG--------------------GGEIAREFEVQ-- 127 (201)
Q Consensus 73 ~~~~vvv~f~a~-wC~~C~~~~~~l~~l~~~~~~--~~~~~vd~~~~--------------------~~~l~~~~~v~-- 127 (201)
++++++|.||++ ||++|+...|.+.++++.+++ +.++.|..+.. +..+.++|++.
T Consensus 27 ~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 106 (146)
T PF08534_consen 27 KGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALGVTIM 106 (146)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTTCEEE
T ss_pred CCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhCCccc
Confidence 799999999999 999999999999999888554 88877777655 25788899988
Q ss_pred -------cccEEEEE-eCCeEEEEEeCCCC
Q psy5680 128 -------AVPTVIGF-RNGDPVDMVVGNAD 149 (201)
Q Consensus 128 -------~~Pti~~~-~~G~~v~~~~G~~~ 149 (201)
.+|+++++ ++|+++....|..+
T Consensus 107 ~~~~~~~~~P~~~lId~~G~V~~~~~g~~~ 136 (146)
T PF08534_consen 107 EDPGNGFGIPTTFLIDKDGKVVYRHVGPDP 136 (146)
T ss_dssp CCTTTTSSSSEEEEEETTSBEEEEEESSBT
T ss_pred cccccCCeecEEEEEECCCEEEEEEeCCCC
Confidence 99998777 89999999999666
No 100
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=99.31 E-value=1.6e-11 Score=97.41 Aligned_cols=106 Identities=15% Similarity=0.118 Sum_probs=77.6
Q ss_pred ceEEEeCCHhHHHHHHhCCCcEEEEEECCCChhhHhhHHHHHHHHHhCCC--eEEEEEECCC-------C---chhHH-H
Q psy5680 56 MAYLIIEKIDDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG--VEFVKINVEN-------G---GGEIA-R 122 (201)
Q Consensus 56 ~~v~~l~~~~~~~~~~~~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~--~~~~~vd~~~-------~---~~~l~-~ 122 (201)
+.+..+ +++.+.-.--++++++|.||++||++|....|.|+++++++++ +.++.|+++. . -.+++ +
T Consensus 82 F~l~d~-~G~~vsLsd~kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~ 160 (236)
T PLN02399 82 FTVKDI-DGKDVALSKFKGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKQFACT 160 (236)
T ss_pred eEEECC-CCCEEeHHHhCCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCHHHHHHHHHH
Confidence 445555 4443322212689999999999999999999999999999975 8899988741 1 01121 2
Q ss_pred HCC----------------------------------CCcccEEEEE-eCCeEEEEEeCCCCHHHHHHHHHHHHh
Q psy5680 123 EFE----------------------------------VQAVPTVIGF-RNGDPVDMVVGNADQDVIQTLVSKLSQ 162 (201)
Q Consensus 123 ~~~----------------------------------v~~~Pti~~~-~~G~~v~~~~G~~~~~~l~~~i~~~~~ 162 (201)
+++ +...|+.+++ ++|+++.++.|..+.+++++.|++++.
T Consensus 161 ~~g~~fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~~~~~le~~I~~lL~ 235 (236)
T PLN02399 161 RFKAEFPIFDKVDVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQKLLA 235 (236)
T ss_pred hcCCCCccccccCCCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCCCHHHHHHHHHHHhc
Confidence 221 1235888888 899999999999999999999988764
No 101
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.31 E-value=1.3e-11 Score=87.12 Aligned_cols=69 Identities=22% Similarity=0.504 Sum_probs=52.7
Q ss_pred CCCcEEEEEECCCChhhHhhHHHHHHHHHhCCC-eEEEEEECCCC-------------------chhHHHHCCCCcccEE
Q psy5680 73 GRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENG-------------------GGEIAREFEVQAVPTV 132 (201)
Q Consensus 73 ~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~-~~~~~vd~~~~-------------------~~~l~~~~~v~~~Pti 132 (201)
++++++|+||++||++|+.+.|.++++++.+.+ +.++.+.-+.. +.++.++|++..+|+.
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~P~~ 99 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLASDGEKAEHQRFLKKHGLEAFPYVLSAELGMAYQVSKLPYA 99 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhCCCCCcEEecHHHHhhcCCCCcCeE
Confidence 488999999999999999999999999888865 66555521111 2456678888888998
Q ss_pred EEE-eCCeEE
Q psy5680 133 IGF-RNGDPV 141 (201)
Q Consensus 133 ~~~-~~G~~v 141 (201)
+++ ++|+++
T Consensus 100 ~vid~~G~v~ 109 (114)
T cd02967 100 VLLDEAGVIA 109 (114)
T ss_pred EEECCCCeEE
Confidence 888 567664
No 102
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=99.27 E-value=6.3e-11 Score=90.44 Aligned_cols=94 Identities=12% Similarity=0.144 Sum_probs=70.6
Q ss_pred EEEeCCHhHHHHHHhCCCcEEEEEECCCChhhHhhHHHHHHHHHh-CCC---eEEEEEECCCC-----------------
Q psy5680 58 YLIIEKIDDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSET-TSG---VEFVKINVENG----------------- 116 (201)
Q Consensus 58 v~~l~~~~~~~~~~~~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~-~~~---~~~~~vd~~~~----------------- 116 (201)
.... +.+++ .+++++|.|||.||++|+...|.+.++.++ ++- -+...||.++.
T Consensus 49 y~~~-~~~~l-----~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~ 122 (184)
T TIGR01626 49 YQPW-GSAEL-----AGKVRVVHHIAGRTSAKEXNASLIDAIKAAKFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKK 122 (184)
T ss_pred ceec-cHHHc-----CCCEEEEEEEecCCChhhccchHHHHHHHcCCCcccccceEEEECccchhhHHHHHHHHHHHhcc
Confidence 4555 55555 699999999999999999999999999653 321 11155555542
Q ss_pred -----------chhHHHHCCCCcccEE-EEE-eCCeEEEEEeCCCCHHHHHHHH
Q psy5680 117 -----------GGEIAREFEVQAVPTV-IGF-RNGDPVDMVVGNADQDVIQTLV 157 (201)
Q Consensus 117 -----------~~~l~~~~~v~~~Pti-~~~-~~G~~v~~~~G~~~~~~l~~~i 157 (201)
.......|++.++|+. +++ ++|+++.++.|..+.+++.+.+
T Consensus 123 ~~P~~~vllD~~g~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~~~ 176 (184)
T TIGR01626 123 ENPWSQVVLDDKGAVKNAWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDIQTVI 176 (184)
T ss_pred cCCcceEEECCcchHHHhcCCCCCCceEEEECCCCcEEEEEeCCCCHHHHHHHH
Confidence 1345679999999876 566 8999999999999999887733
No 103
>PLN02412 probable glutathione peroxidase
Probab=99.26 E-value=3.3e-11 Score=91.19 Aligned_cols=91 Identities=14% Similarity=0.176 Sum_probs=71.9
Q ss_pred CCCcEEEEEECCCChhhHhhHHHHHHHHHhCCC--eEEEEEECCC-------CchhH----HHHCC--------------
Q psy5680 73 GRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG--VEFVKINVEN-------GGGEI----AREFE-------------- 125 (201)
Q Consensus 73 ~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~--~~~~~vd~~~-------~~~~l----~~~~~-------------- 125 (201)
++++++|.||++||++|+...+.++++.++|++ +.++.|+++. ...++ .++++
T Consensus 28 ~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~~~~fpvl~~~d~~g~ 107 (167)
T PLN02412 28 KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNEEIQQTVCTRFKAEFPIFDKVDVNGK 107 (167)
T ss_pred CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHHHHHHHHHHccCCCCceEeEEeeCCC
Confidence 679999999999999999999999999999985 8898988742 10111 11111
Q ss_pred --------------------CCcccEEEEE-eCCeEEEEEeCCCCHHHHHHHHHHHHhh
Q psy5680 126 --------------------VQAVPTVIGF-RNGDPVDMVVGNADQDVIQTLVSKLSQK 163 (201)
Q Consensus 126 --------------------v~~~Pti~~~-~~G~~v~~~~G~~~~~~l~~~i~~~~~~ 163 (201)
+...|+.+++ ++|+++.++.|..+.+++...|+++++.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~~~~~~l~~~i~~~l~~ 166 (167)
T PLN02412 108 NTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPTTSPLKIEKDIQNLLGQ 166 (167)
T ss_pred CCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCCCCHHHHHHHHHHHHhh
Confidence 3345887888 8999999999999999999999888753
No 104
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=99.25 E-value=6.6e-11 Score=85.24 Aligned_cols=75 Identities=11% Similarity=0.195 Sum_probs=53.4
Q ss_pred HhCCCcEEEEEECCCChhhHhhHHHH---HHHHHhCC-CeEEEEEECCCCchhHHHHCCCCcccEEEEE-eCCeEEEEEe
Q psy5680 71 IRGRNPVLAYFFKPSCGFCKQLEPKI---STVSETTS-GVEFVKINVENGGGEIAREFEVQAVPTVIGF-RNGDPVDMVV 145 (201)
Q Consensus 71 ~~~~~~vvv~f~a~wC~~C~~~~~~l---~~l~~~~~-~~~~~~vd~~~~~~~l~~~~~v~~~Pti~~~-~~G~~v~~~~ 145 (201)
-.++++++|+|+++||++|+.+...+ .++.+... ++..+.++.+..+..+. ..+ ..+||++|+ .+|+++.++.
T Consensus 20 k~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~~~-~~g-~~vPtivFld~~g~vi~~i~ 97 (130)
T cd02960 20 KKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKNLS-PDG-QYVPRIMFVDPSLTVRADIT 97 (130)
T ss_pred HHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCCcC-ccC-cccCeEEEECCCCCCccccc
Confidence 38899999999999999999999875 55555554 35555666552211111 233 679999999 7888877766
Q ss_pred CC
Q psy5680 146 GN 147 (201)
Q Consensus 146 G~ 147 (201)
|.
T Consensus 98 Gy 99 (130)
T cd02960 98 GR 99 (130)
T ss_pred cc
Confidence 63
No 105
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.24 E-value=6.9e-11 Score=91.17 Aligned_cols=85 Identities=24% Similarity=0.428 Sum_probs=62.6
Q ss_pred CCCcEEEEEECCCChhhHhhHHHHHHHHHhCCCeEEEEEECCCC-------------------chhHHHHCCCCcccEEE
Q psy5680 73 GRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENG-------------------GGEIAREFEVQAVPTVI 133 (201)
Q Consensus 73 ~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~-------------------~~~l~~~~~v~~~Pti~ 133 (201)
++++++|+||++||++|+.+.|.+.++.+.+. +.++.+..+.. +.++.+.|++..+|+.+
T Consensus 73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~-~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~~~ 151 (189)
T TIGR02661 73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAEE-TDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPYGV 151 (189)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHhcC-CcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccceEE
Confidence 68899999999999999999999999987753 33444432211 25678899999999988
Q ss_pred EE-eCCeEEEEEeCC-CCHHHHHHHHHHH
Q psy5680 134 GF-RNGDPVDMVVGN-ADQDVIQTLVSKL 160 (201)
Q Consensus 134 ~~-~~G~~v~~~~G~-~~~~~l~~~i~~~ 160 (201)
++ ++|++..+ |. ...+.+.++++..
T Consensus 152 lID~~G~I~~~--g~~~~~~~le~ll~~l 178 (189)
T TIGR02661 152 LLDQDGKIRAK--GLTNTREHLESLLEAD 178 (189)
T ss_pred EECCCCeEEEc--cCCCCHHHHHHHHHHH
Confidence 87 67877654 43 4556666666554
No 106
>smart00594 UAS UAS domain.
Probab=99.24 E-value=1.2e-10 Score=83.50 Aligned_cols=90 Identities=14% Similarity=0.282 Sum_probs=72.2
Q ss_pred HHHHhCCCcEEEEEECCCChhhHhhHHHH---HHHHHhCCC-eEEEEEECCCC-chhHHHHCCCCcccEEEEE-eCC---
Q psy5680 68 KQTIRGRNPVLAYFFKPSCGFCKQLEPKI---STVSETTSG-VEFVKINVENG-GGEIAREFEVQAVPTVIGF-RNG--- 138 (201)
Q Consensus 68 ~~~~~~~~~vvv~f~a~wC~~C~~~~~~l---~~l~~~~~~-~~~~~vd~~~~-~~~l~~~~~v~~~Pti~~~-~~G--- 138 (201)
+.+..++|+++|+|+++||+.|..+...+ +++.+.+.. +.+..+|++.. +.+++.+|++.++|+++++ ++|
T Consensus 21 ~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~l~~~~g~~ 100 (122)
T smart00594 21 QEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQRVSQFYKLDSFPYVAIVDPRTGQR 100 (122)
T ss_pred HHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhHHHHHHhcCcCCCCEEEEEecCCCce
Confidence 33337889999999999999999998864 566666654 77778887744 3678999999999999999 454
Q ss_pred --eEEEEEeCCCCHHHHHHHH
Q psy5680 139 --DPVDMVVGNADQDVIQTLV 157 (201)
Q Consensus 139 --~~v~~~~G~~~~~~l~~~i 157 (201)
..+.++.|..+.++|...|
T Consensus 101 ~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 101 VIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred eEEEeccccCCCCHHHHHHhh
Confidence 2466899999999998876
No 107
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=99.19 E-value=1.5e-10 Score=86.28 Aligned_cols=88 Identities=15% Similarity=0.194 Sum_probs=67.1
Q ss_pred CCCcEEEEEECCCChhhHhhHHHHHHHHHhCCC--eEEEEEECC--------CC--chhHHHH-CC--------------
Q psy5680 73 GRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG--VEFVKINVE--------NG--GGEIARE-FE-------------- 125 (201)
Q Consensus 73 ~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~--~~~~~vd~~--------~~--~~~l~~~-~~-------------- 125 (201)
++++++|.||++||++|+...|.+++++++|++ +.++.|+++ .. -.+.+++ ++
T Consensus 21 ~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~~f~~~~~~~~fp~~~d~~~~~~ 100 (153)
T TIGR02540 21 RGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIESFARRNYGVTFPMFSKIKILGS 100 (153)
T ss_pred CCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHHHHHHHhcCCCCCccceEecCCC
Confidence 688999999999999999999999999999974 889988862 11 0112221 21
Q ss_pred ---------C---CcccE----EEEE-eCCeEEEEEeCCCCHHHHHHHHHHH
Q psy5680 126 ---------V---QAVPT----VIGF-RNGDPVDMVVGNADQDVIQTLVSKL 160 (201)
Q Consensus 126 ---------v---~~~Pt----i~~~-~~G~~v~~~~G~~~~~~l~~~i~~~ 160 (201)
+ ..+|+ .+++ ++|+++.++.|..+.+++.+.|++.
T Consensus 101 ~~~~~~~~~~~~~~~~p~~~~~tflID~~G~v~~~~~g~~~~~~l~~~i~~l 152 (153)
T TIGR02540 101 EAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPEEPVEEIRPEITAL 152 (153)
T ss_pred CCCcHHHHHHhcCCCCCCCccEEEEEcCCCcEEEEECCCCCHHHHHHHHHHh
Confidence 1 13675 5555 8999999999999999988888765
No 108
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=99.17 E-value=2.3e-10 Score=92.32 Aligned_cols=102 Identities=19% Similarity=0.349 Sum_probs=79.5
Q ss_pred eEEEeCCHhHHHHHH---hCCCcEEEEEECCCChhhHhhHHHHHHHHHhCCCeEEEEEECCCCchhHHHHCCCCcccEEE
Q psy5680 57 AYLIIEKIDDFKQTI---RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTVI 133 (201)
Q Consensus 57 ~v~~l~~~~~~~~~~---~~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~l~~~~~v~~~Pti~ 133 (201)
.+.+|.+.+.|.+.+ .++..|||+||.+.++.|..+...|..||++|+.+.|++|..... + +...|.+..+|+++
T Consensus 126 ~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~vKFvkI~a~~~-~-~~~~f~~~~LPtll 203 (265)
T PF02114_consen 126 EVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYPEVKFVKIRASKC-P-ASENFPDKNLPTLL 203 (265)
T ss_dssp SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TTSEEEEEEECGC-C-TTTTS-TTC-SEEE
T ss_pred eEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCceEEEEEehhcc-C-cccCCcccCCCEEE
Confidence 388996678999988 335679999999999999999999999999999999999998887 5 78899999999999
Q ss_pred EEeCCeEEEEEeCC-------CCHHHHHHHHHHH
Q psy5680 134 GFRNGDPVDMVVGN-------ADQDVIQTLVSKL 160 (201)
Q Consensus 134 ~~~~G~~v~~~~G~-------~~~~~l~~~i~~~ 160 (201)
+|++|..+..+.|. ....+|..+|.++
T Consensus 204 vYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~ 237 (265)
T PF02114_consen 204 VYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIEY 237 (265)
T ss_dssp EEETTEEEEEECTGGGCT-TT--HHHHHHHHHTT
T ss_pred EEECCEEEEeEEehHHhcCCCCCHHHHHHHHHHc
Confidence 99999999888763 2345555555544
No 109
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=99.16 E-value=1.2e-10 Score=86.58 Aligned_cols=83 Identities=13% Similarity=0.199 Sum_probs=62.7
Q ss_pred CCCcEEEEEECCCChhhHhhHHHHHHHHHhCCC--eEEEEEECCC-------C---chhHHHH-CC--------------
Q psy5680 73 GRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG--VEFVKINVEN-------G---GGEIARE-FE-------------- 125 (201)
Q Consensus 73 ~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~--~~~~~vd~~~-------~---~~~l~~~-~~-------------- 125 (201)
++++++|+||++||+ |....|.++++++++.+ +.++.|+++. . -.+++++ ++
T Consensus 21 ~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~f~~~~~~~~fp~~~d~d~~~~ 99 (152)
T cd00340 21 KGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEEIKEFCETNYGVTFPMFAKIDVNGE 99 (152)
T ss_pred CCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHHHHHHHHHhcCCCceeeeeEeccCC
Confidence 689999999999999 99999999999999974 8888887642 1 0122222 22
Q ss_pred ---------CCccc-----------EEEEE-eCCeEEEEEeCCCCHHHHHHH
Q psy5680 126 ---------VQAVP-----------TVIGF-RNGDPVDMVVGNADQDVIQTL 156 (201)
Q Consensus 126 ---------v~~~P-----------ti~~~-~~G~~v~~~~G~~~~~~l~~~ 156 (201)
+..+| +.+++ ++|+++.++.|..+.+++.+.
T Consensus 100 ~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~~~G~~~~~~l~~~ 151 (152)
T cd00340 100 NAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKRFAPTTDPEELEKD 151 (152)
T ss_pred CCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEEECCCCCHHHHHhc
Confidence 23456 56666 899999999998888877654
No 110
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=99.14 E-value=9.1e-10 Score=83.41 Aligned_cols=96 Identities=16% Similarity=0.271 Sum_probs=75.8
Q ss_pred CCCcEEEEEECCCChhhHhhHHHHHHHHHhCCC--eEEEEEECCC-------C---------------------chhHHH
Q psy5680 73 GRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG--VEFVKINVEN-------G---------------------GGEIAR 122 (201)
Q Consensus 73 ~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~--~~~~~vd~~~-------~---------------------~~~l~~ 122 (201)
+++++|++||++||+.|....+.+.++.+++++ +.++.|..+. . +..+.+
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~ 103 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVAK 103 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHHH
Confidence 689999999999999999999999999999973 8888888764 1 245677
Q ss_pred HCCCCcccEEEEE-eCCeEEEEE---------eCCCCHHHHHHHHHHHHhhhhhcc
Q psy5680 123 EFEVQAVPTVIGF-RNGDPVDMV---------VGNADQDVIQTLVSKLSQKLATHY 168 (201)
Q Consensus 123 ~~~v~~~Pti~~~-~~G~~v~~~---------~G~~~~~~l~~~i~~~~~~~~~~~ 168 (201)
.|++..+|+++++ ++|+++... .+..+.+++.+.|+..+.....+.
T Consensus 104 ~~~v~~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~ 159 (171)
T cd02969 104 AYGAACTPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALLAGKPVPV 159 (171)
T ss_pred HcCCCcCCcEEEECCCCeEEEeecccCCcccccccccHHHHHHHHHHHHcCCCCCc
Confidence 8999999999999 688776442 123467889999988876654433
No 111
>KOG3414|consensus
Probab=99.13 E-value=1.8e-09 Score=75.87 Aligned_cols=113 Identities=13% Similarity=0.186 Sum_probs=96.9
Q ss_pred eEEEeCCHhHHHHHH--hCCCcEEEEEECCCChhhHhhHHHHHHHHHhCCC-eEEEEEECCCCchhHHHHCCCCcccEEE
Q psy5680 57 AYLIIEKIDDFKQTI--RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENGGGEIAREFEVQAVPTVI 133 (201)
Q Consensus 57 ~v~~l~~~~~~~~~~--~~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~-~~~~~vd~~~~~~~l~~~~~v~~~Pti~ 133 (201)
.+..|++.++.++++ ...+.+++-|..+|-|.|..|...+.+++....+ ..++.+|+++- +++.+-|++...|+++
T Consensus 4 lLp~L~s~~~VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV-~~~~~~~~l~~p~tvm 82 (142)
T KOG3414|consen 4 LLPTLHSGWEVDQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEV-PDFVKMYELYDPPTVM 82 (142)
T ss_pred eccccccHHHHHHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchh-hhhhhhhcccCCceEE
Confidence 366778999999999 7889999999999999999999999999999998 89999999999 9999999999999999
Q ss_pred EEeCCeEEE---------EEeCC-CCHHHHHHHHHHHHhhhhhcccc
Q psy5680 134 GFRNGDPVD---------MVVGN-ADQDVIQTLVSKLSQKLATHYQV 170 (201)
Q Consensus 134 ~~~~G~~v~---------~~~G~-~~~~~l~~~i~~~~~~~~~~~~~ 170 (201)
+|-+++.+- .+.+. .+.+++.+.++.......+..+.
T Consensus 83 fFfn~kHmkiD~gtgdn~Kin~~~~~kq~~Idiie~iyRga~KGKgi 129 (142)
T KOG3414|consen 83 FFFNNKHMKIDLGTGDNNKINFAFEDKQEFIDIIETIYRGARKGKGI 129 (142)
T ss_pred EEEcCceEEEeeCCCCCceEEEEeccHHHHHHHHHHHHHhhhcCCeE
Confidence 997776543 23333 47899999999888776665554
No 112
>KOG0911|consensus
Probab=99.10 E-value=1.2e-10 Score=89.85 Aligned_cols=135 Identities=23% Similarity=0.257 Sum_probs=105.8
Q ss_pred EEEeCCHhHHHHHHhCCCcEEEEEECCCChhhHhhHHHHHHHHHhCCCeEEEEEECCCCchhHHHHCCCCcccEEEEEeC
Q psy5680 58 YLIIEKIDDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTVIGFRN 137 (201)
Q Consensus 58 v~~l~~~~~~~~~~~~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~l~~~~~v~~~Pti~~~~~ 137 (201)
+..+...++| +..+++..++.||++||..|..+...+..+++..+++.+++++.++. ++++..+.+...|.+.++..
T Consensus 3 v~~i~~~~~f--~~~~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~~~~~~k~~a~~~-~eis~~~~v~~vp~~~~~~~ 79 (227)
T KOG0911|consen 3 VQFIVFQEQF--LDQKGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFKNAQFLKLEAEEF-PEISNLIAVEAVPYFVFFFL 79 (227)
T ss_pred ceeehhHHHH--HHhccchhhhhhhhhhhhhhhhHHHHHHHHHHhhhhheeeeehhhhh-hHHHHHHHHhcCceeeeeec
Confidence 6667667778 44689999999999999999999999999999997799999999999 99999999999999999999
Q ss_pred CeEEEEEeCCCCHHHHHHHHHHHHhhhhhccccccC---------CCCccHHHHHHHHhhcceEEEee
Q psy5680 138 GDPVDMVVGNADQDVIQTLVSKLSQKLATHYQVDLT---------TGTPDQVYLIVLLRYDQVYLIVC 196 (201)
Q Consensus 138 G~~v~~~~G~~~~~~l~~~i~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~ 196 (201)
|+.+.+..| .....+...+................ ..+.-...+..++..++|+||-=
T Consensus 80 ~~~v~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~lv~a~~v~lFmK 146 (227)
T KOG0911|consen 80 GEKVDRLSG-ADPPFLVSKVEKLAESGSASLGMGLSTTIRETQTTNETDLDNRLEKLVKAKPVMLFMK 146 (227)
T ss_pred chhhhhhhc-cCcHHHHHHHHHhhhhcccccCCCCCcchhcccccchhhHHHHHHHhcccCeEEEEec
Confidence 999999999 55555555555555544311111111 11112348999999999999963
No 113
>KOG1672|consensus
Probab=99.09 E-value=6e-10 Score=84.07 Aligned_cols=90 Identities=26% Similarity=0.514 Sum_probs=85.3
Q ss_pred EEEeCCHhHHHHHHhCCCcEEEEEECCCChhhHhhHHHHHHHHHhCCCeEEEEEECCCCchhHHHHCCCCcccEEEEEeC
Q psy5680 58 YLIIEKIDDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTVIGFRN 137 (201)
Q Consensus 58 v~~l~~~~~~~~~~~~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~l~~~~~v~~~Pti~~~~~ 137 (201)
+.+|.+..+|-+...+..-|+++||-+.-..|+-|...|+.|++.|.+..|++||+... |-++.+++|..+|++++|++
T Consensus 68 y~ev~~Ekdf~~~~~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~eTrFikvnae~~-PFlv~kL~IkVLP~v~l~k~ 146 (211)
T KOG1672|consen 68 YEEVASEKDFFEEVKKSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVETRFIKVNAEKA-PFLVTKLNIKVLPTVALFKN 146 (211)
T ss_pred EEEeccHHHHHHHhhcCceEEEEEEcCCCcceehHHHHHHHHHHhcccceEEEEecccC-ceeeeeeeeeEeeeEEEEEc
Confidence 88997788998888788889999999999999999999999999999999999999999 99999999999999999999
Q ss_pred CeEEEEEeCCC
Q psy5680 138 GDPVDMVVGNA 148 (201)
Q Consensus 138 G~~v~~~~G~~ 148 (201)
|+.+.++.|+.
T Consensus 147 g~~~D~iVGF~ 157 (211)
T KOG1672|consen 147 GKTVDYVVGFT 157 (211)
T ss_pred CEEEEEEeeHh
Confidence 99999999864
No 114
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=99.05 E-value=8.8e-10 Score=80.41 Aligned_cols=85 Identities=14% Similarity=0.249 Sum_probs=69.7
Q ss_pred CCCcEEEEEE-CCCChhhHhhHHHHHHHHHhCCC--eEEEEEECCCC--------------------chhHHHHCCCCcc
Q psy5680 73 GRNPVLAYFF-KPSCGFCKQLEPKISTVSETTSG--VEFVKINVENG--------------------GGEIAREFEVQAV 129 (201)
Q Consensus 73 ~~~~vvv~f~-a~wC~~C~~~~~~l~~l~~~~~~--~~~~~vd~~~~--------------------~~~l~~~~~v~~~ 129 (201)
++++++|.|| +.||+.|....+.+.++.+++.+ +.++.|..+.. +..+.+.|++...
T Consensus 22 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~ 101 (140)
T cd03017 22 RGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVWGE 101 (140)
T ss_pred CCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCccc
Confidence 5899999999 58999999999999999888763 77877776644 2467788999888
Q ss_pred ---------cEEEEE-eCCeEEEEEeCCCCHHHHHHHH
Q psy5680 130 ---------PTVIGF-RNGDPVDMVVGNADQDVIQTLV 157 (201)
Q Consensus 130 ---------Pti~~~-~~G~~v~~~~G~~~~~~l~~~i 157 (201)
|+++++ ++|+++..+.|....+.+.+.+
T Consensus 102 ~~~~~~~~~p~~~lid~~G~v~~~~~g~~~~~~~~~~~ 139 (140)
T cd03017 102 KKKKYMGIERSTFLIDPDGKIVKVWRKVKPKGHAEEVL 139 (140)
T ss_pred cccccCCcceeEEEECCCCEEEEEEecCCccchHHHHh
Confidence 898888 5799999999988777776654
No 115
>PTZ00256 glutathione peroxidase; Provisional
Probab=99.05 E-value=1.3e-09 Score=83.53 Aligned_cols=90 Identities=11% Similarity=0.158 Sum_probs=66.6
Q ss_pred CCCcE-EEEEECCCChhhHhhHHHHHHHHHhCCC--eEEEEEECCCC------c-h---hH-HHH---------------
Q psy5680 73 GRNPV-LAYFFKPSCGFCKQLEPKISTVSETTSG--VEFVKINVENG------G-G---EI-ARE--------------- 123 (201)
Q Consensus 73 ~~~~v-vv~f~a~wC~~C~~~~~~l~~l~~~~~~--~~~~~vd~~~~------~-~---~l-~~~--------------- 123 (201)
+++++ ++.+||+||++|+...|.+++++++|++ +.++.|+++.. + . .. .++
T Consensus 39 ~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~~~~~~~~f~~~~~~~~fpv~~d~d~~g 118 (183)
T PTZ00256 39 KGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPWDEPEIKEYVQKKFNVDFPLFQKIEVNG 118 (183)
T ss_pred CCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCCCceEEecCC
Confidence 57765 4566999999999999999999999875 88888876410 0 0 00 111
Q ss_pred ---------------------CCCCcccE---EEEE-eCCeEEEEEeCCCCHHHHHHHHHHHHh
Q psy5680 124 ---------------------FEVQAVPT---VIGF-RNGDPVDMVVGNADQDVIQTLVSKLSQ 162 (201)
Q Consensus 124 ---------------------~~v~~~Pt---i~~~-~~G~~v~~~~G~~~~~~l~~~i~~~~~ 162 (201)
+++..+|+ .+++ ++|+++.++.|..+.+.+.+.|.+++.
T Consensus 119 ~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~~g~~~~~~l~~~I~~ll~ 182 (183)
T PTZ00256 119 ENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYFSPKVNPNEMIQDIEKLLN 182 (183)
T ss_pred CCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEECCCCCHHHHHHHHHHHhc
Confidence 23456784 3455 899999999999999999998888764
No 116
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=99.05 E-value=4e-10 Score=75.12 Aligned_cols=68 Identities=28% Similarity=0.451 Sum_probs=51.1
Q ss_pred HHHHHhCCCcEEEEEECCCChhhHhhHHHH---HHHHHhC-CCeEEEEEECCCCchhHHHHCCCCcccEEEEEe
Q psy5680 67 FKQTIRGRNPVLAYFFKPSCGFCKQLEPKI---STVSETT-SGVEFVKINVENGGGEIAREFEVQAVPTVIGFR 136 (201)
Q Consensus 67 ~~~~~~~~~~vvv~f~a~wC~~C~~~~~~l---~~l~~~~-~~~~~~~vd~~~~~~~l~~~~~v~~~Pti~~~~ 136 (201)
+..+..++++++|+|+++||++|+.+...+ .++.+.+ .++.++.+|.+.. .... ++...++|+++++.
T Consensus 10 l~~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~-~~~~-~~~~~~~P~~~~ld 81 (82)
T PF13899_consen 10 LAEAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDE-DPNA-QFDRQGYPTFFFLD 81 (82)
T ss_dssp HHHHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTH-HHHH-HHHHCSSSEEEEEE
T ss_pred HHHHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCC-ChhH-HhCCccCCEEEEeC
Confidence 444448899999999999999999999877 5565533 3489999999877 4332 22226699999984
No 117
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=99.05 E-value=1.1e-09 Score=75.71 Aligned_cols=84 Identities=32% Similarity=0.643 Sum_probs=70.0
Q ss_pred CCcEEEEEECCCChhhHhhHHHHHHHHHhCCC-eEEEEEECC-CCchhHHHHCC--CCcccEEEEEeCCeEEEEEeC--C
Q psy5680 74 RNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVE-NGGGEIAREFE--VQAVPTVIGFRNGDPVDMVVG--N 147 (201)
Q Consensus 74 ~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~-~~~~~vd~~-~~~~~l~~~~~--v~~~Pti~~~~~G~~v~~~~G--~ 147 (201)
++++++.||++||++|+.+.|.+.++++.+.. +.+..+|.. .. +++...|+ +..+|+++++.+|..+....+ .
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 110 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDEN-PDLAAEFGVAVRSIPTLLLFKDGKEVDRLVGGKV 110 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCC-hHHHHHHhhhhccCCeEEEEeCcchhhhhhhccc
Confidence 78999999999999999999999999999986 999999997 77 89999999 999999998888876555555 3
Q ss_pred CCHHHHHHHHH
Q psy5680 148 ADQDVIQTLVS 158 (201)
Q Consensus 148 ~~~~~l~~~i~ 158 (201)
.....+.....
T Consensus 111 ~~~~~~~~~~~ 121 (127)
T COG0526 111 LPKEALIDALG 121 (127)
T ss_pred CCHHHHHHHhc
Confidence 45555544433
No 118
>KOG0914|consensus
Probab=99.02 E-value=4.7e-10 Score=86.09 Aligned_cols=85 Identities=20% Similarity=0.320 Sum_probs=76.0
Q ss_pred EEEeCCHhHHHHHH--hCCCcEEEEEECCCChhhHhhHHHHHHHHHhCCC--eEEEEEECCCCchhHHHHCCCC------
Q psy5680 58 YLIIEKIDDFKQTI--RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG--VEFVKINVENGGGEIAREFEVQ------ 127 (201)
Q Consensus 58 v~~l~~~~~~~~~~--~~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~--~~~~~vd~~~~~~~l~~~~~v~------ 127 (201)
++-.++.+.+++.+ ++...++|.|++.|.+.|..+.|.+.++..+|.. +.|++||+... ++.+++|+|.
T Consensus 126 ikyf~~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrf-pd~a~kfris~s~~sr 204 (265)
T KOG0914|consen 126 IKYFTNMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRF-PDVAAKFRISLSPGSR 204 (265)
T ss_pred eeeecchhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccC-cChHHheeeccCcccc
Confidence 56665677777777 7778899999999999999999999999999976 99999999999 9999999985
Q ss_pred cccEEEEEeCCeEEEE
Q psy5680 128 AVPTVIGFRNGDPVDM 143 (201)
Q Consensus 128 ~~Pti~~~~~G~~v~~ 143 (201)
..||+++|++|+++.|
T Consensus 205 QLPT~ilFq~gkE~~R 220 (265)
T KOG0914|consen 205 QLPTYILFQKGKEVSR 220 (265)
T ss_pred cCCeEEEEccchhhhc
Confidence 6899999999998764
No 119
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=5e-09 Score=76.53 Aligned_cols=99 Identities=18% Similarity=0.364 Sum_probs=81.7
Q ss_pred hHHHHHHhCCCcEEEEEECCCChhhHhhHHHH---HHHHHhCCC-eEEEEEECCCC---------------chhHHHHCC
Q psy5680 65 DDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKI---STVSETTSG-VEFVKINVENG---------------GGEIAREFE 125 (201)
Q Consensus 65 ~~~~~~~~~~~~vvv~f~a~wC~~C~~~~~~l---~~l~~~~~~-~~~~~vd~~~~---------------~~~l~~~~~ 125 (201)
++...+...++..+++|-++.|+.|.++...+ +++.+.+.+ +.++.+++... ..+|++.|+
T Consensus 33 ~d~ksi~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~ 112 (182)
T COG2143 33 DDNKSISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFA 112 (182)
T ss_pred HHHHhcCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhc
Confidence 33334447899999999999999999999876 566666666 88888887654 258999999
Q ss_pred CCcccEEEEE-eCCeEEEEEeCCCCHHHHHHHHHHHHhh
Q psy5680 126 VQAVPTVIGF-RNGDPVDMVVGNADQDVIQTLVSKLSQK 163 (201)
Q Consensus 126 v~~~Pti~~~-~~G~~v~~~~G~~~~~~l~~~i~~~~~~ 163 (201)
++++|++++| ++|+.+....|.++++++...++-..+.
T Consensus 113 vrstPtfvFfdk~Gk~Il~lPGY~ppe~Fl~vlkYVa~g 151 (182)
T COG2143 113 VRSTPTFVFFDKTGKTILELPGYMPPEQFLAVLKYVADG 151 (182)
T ss_pred cccCceEEEEcCCCCEEEecCCCCCHHHHHHHHHHHHHH
Confidence 9999999999 6889999999999999999988766544
No 120
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.98 E-value=4.3e-09 Score=67.81 Aligned_cols=68 Identities=22% Similarity=0.481 Sum_probs=54.3
Q ss_pred EEEEECCCChhhHhhHHHHHHHHHhCCCeEEEEEECCCCchh----HHHHCCCCcccEEEEEeCCeEEEEEeCCCCHHHH
Q psy5680 78 LAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGE----IAREFEVQAVPTVIGFRNGDPVDMVVGNADQDVI 153 (201)
Q Consensus 78 vv~f~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~----l~~~~~v~~~Pti~~~~~G~~v~~~~G~~~~~~l 153 (201)
+..|+++||++|+.+.+.+++ .++.+..+|++.+ +. +.+++++.++|++++. |+. +.| .+.+++
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~-----~~i~~~~vdi~~~-~~~~~~~~~~~~~~~vP~~~~~--~~~---~~g-~~~~~i 69 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS-----KGIAFEEIDVEKD-SAAREEVLKVLGQRGVPVIVIG--HKI---IVG-FDPEKL 69 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH-----CCCeEEEEeccCC-HHHHHHHHHHhCCCcccEEEEC--CEE---Eee-CCHHHH
Confidence 578999999999999888765 3578888999877 44 4567999999999884 543 677 577888
Q ss_pred HHHH
Q psy5680 154 QTLV 157 (201)
Q Consensus 154 ~~~i 157 (201)
.++|
T Consensus 70 ~~~i 73 (74)
T TIGR02196 70 DQLL 73 (74)
T ss_pred HHHh
Confidence 8776
No 121
>KOG0913|consensus
Probab=98.96 E-value=4.2e-10 Score=87.28 Aligned_cols=102 Identities=19% Similarity=0.339 Sum_probs=91.1
Q ss_pred EEEeCCHhHHHHHHhCCCcEEEEEECCCChhhHhhHHHHHHHHHhCCC--eEEEEEECCCCchhHHHHCCCCcccEEEEE
Q psy5680 58 YLIIEKIDDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG--VEFVKINVENGGGEIAREFEVQAVPTVIGF 135 (201)
Q Consensus 58 v~~l~~~~~~~~~~~~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~--~~~~~vd~~~~~~~l~~~~~v~~~Pti~~~ 135 (201)
++.+ +.+++...+ .+-+++.|+||||+.|....+.|+.++.--.+ +.++.||+..+ +.+.-+|-+...|||.-.
T Consensus 26 ~~~~-~eenw~~~l--~gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~n-pgLsGRF~vtaLptIYHv 101 (248)
T KOG0913|consen 26 LTRI-DEENWKELL--TGEWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTN-PGLSGRFLVTALPTIYHV 101 (248)
T ss_pred eEEe-cccchhhhh--chHHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEec-cccceeeEEEecceEEEe
Confidence 8899 999999986 67799999999999999999999999866555 99999999999 999999999999999999
Q ss_pred eCCeEEEEEeCCCCHHHHHHHHHHHHhhh
Q psy5680 136 RNGDPVDMVVGNADQDVIQTLVSKLSQKL 164 (201)
Q Consensus 136 ~~G~~v~~~~G~~~~~~l~~~i~~~~~~~ 164 (201)
++|.- .+|.|..+..+++.+++......
T Consensus 102 kDGeF-rrysgaRdk~dfisf~~~r~w~~ 129 (248)
T KOG0913|consen 102 KDGEF-RRYSGARDKNDFISFEEHREWQS 129 (248)
T ss_pred ecccc-ccccCcccchhHHHHHHhhhhhc
Confidence 99854 58999999999999997765443
No 122
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=98.93 E-value=8.8e-08 Score=68.27 Aligned_cols=110 Identities=12% Similarity=0.150 Sum_probs=88.3
Q ss_pred EEEeCCHhHHHHHH--hCCCcEEEEEECCCChhhHhhHHHHHHHHHhCCC-eEEEEEECCCCchhHHHHCCCCcccE-EE
Q psy5680 58 YLIIEKIDDFKQTI--RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENGGGEIAREFEVQAVPT-VI 133 (201)
Q Consensus 58 v~~l~~~~~~~~~~--~~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~-~~~~~vd~~~~~~~l~~~~~v~~~Pt-i~ 133 (201)
+..|++..+.++++ .+++.+++.|..+|-+.|..+...+.+++.+.++ ..++.+|+++. |++.+.|.+. -|. ++
T Consensus 2 L~~L~s~~~VDqAI~~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~V-pdfn~~yel~-dP~tvm 79 (133)
T PF02966_consen 2 LPHLHSGWHVDQAILSEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDEV-PDFNQMYELY-DPCTVM 79 (133)
T ss_dssp SEEE-SHHHHHHHHHH-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTT-HCCHHHTTS--SSEEEE
T ss_pred CcccCccchHHHHHhccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEcccc-hhhhcccccC-CCeEEE
Confidence 35677899999999 7889999999999999999999999999999998 99999999999 9999999999 775 66
Q ss_pred EEeCCeEEEEEeC----------CCCHHHHHHHHHHHHhhhhhccc
Q psy5680 134 GFRNGDPVDMVVG----------NADQDVIQTLVSKLSQKLATHYQ 169 (201)
Q Consensus 134 ~~~~G~~v~~~~G----------~~~~~~l~~~i~~~~~~~~~~~~ 169 (201)
+|-+++.+..-.| ..+.+++...++..........+
T Consensus 80 FF~rnkhm~vD~GtgnnnKin~~~~~kqe~iDiie~iyrga~kGk~ 125 (133)
T PF02966_consen 80 FFFRNKHMMVDFGTGNNNKINWAFEDKQEFIDIIETIYRGARKGKG 125 (133)
T ss_dssp EEETTEEEEEESSSSSSSSBCS--SCHHHHHHHHHHHHHHHHTT-S
T ss_pred EEecCeEEEEEecCCCccEEEEEcCcHHHHHHHHHHHHHHhhcCCe
Confidence 6667877654444 24689999999988776655444
No 123
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=98.92 E-value=1.5e-08 Score=76.59 Aligned_cols=74 Identities=12% Similarity=0.144 Sum_probs=60.9
Q ss_pred CCCcEEEEEECCC-ChhhHhhHHHHHHHHHhCCCeEEEEEECCCC-------------------c---hhHHHHCCCCcc
Q psy5680 73 GRNPVLAYFFKPS-CGFCKQLEPKISTVSETTSGVEFVKINVENG-------------------G---GEIAREFEVQAV 129 (201)
Q Consensus 73 ~~~~vvv~f~a~w-C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~-------------------~---~~l~~~~~v~~~ 129 (201)
++++++|.||+.| |++|....+.++++++++.++.++.|..|.. + ..+++.|++...
T Consensus 43 ~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~~~~vv~vs~D~~~~~~~f~~~~~~~~~~~lsD~~~~~~~~~~gv~~~ 122 (167)
T PRK00522 43 AGKRKVLNIFPSIDTGVCATSVRKFNQEAAELDNTVVLCISADLPFAQKRFCGAEGLENVITLSDFRDHSFGKAYGVAIA 122 (167)
T ss_pred CCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcCCcEEEEEeCCCHHHHHHHHHhCCCCCceEeecCCccHHHHHhCCeec
Confidence 6889999999999 9999999999999999987788888877743 1 367789999877
Q ss_pred c---------EEEEE-eCCeEEEEEeC
Q psy5680 130 P---------TVIGF-RNGDPVDMVVG 146 (201)
Q Consensus 130 P---------ti~~~-~~G~~v~~~~G 146 (201)
| +.+++ ++|+++..+.+
T Consensus 123 ~~~~~g~~~r~tfvId~~G~I~~~~~~ 149 (167)
T PRK00522 123 EGPLKGLLARAVFVLDENNKVVYSELV 149 (167)
T ss_pred ccccCCceeeEEEEECCCCeEEEEEEC
Confidence 7 77777 68888776643
No 124
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=98.90 E-value=2.2e-08 Score=65.77 Aligned_cols=73 Identities=26% Similarity=0.545 Sum_probs=57.8
Q ss_pred EEEECCCChhhHhhHHHHHHHHHhCCCeEEEEEECCCCchhHHHHCCCCcccEEEEEeCCeEEEEEeC-CCCHHHHHHHH
Q psy5680 79 AYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTVIGFRNGDPVDMVVG-NADQDVIQTLV 157 (201)
Q Consensus 79 v~f~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~l~~~~~v~~~Pti~~~~~G~~v~~~~G-~~~~~~l~~~i 157 (201)
|.+++++|+.|..+...++++...++ +.+-.+|.... +++ .+|||.++|++++ +|+. ++.| ..+.+++.++|
T Consensus 3 I~v~~~~C~~C~~~~~~~~~~~~~~~-i~~ei~~~~~~-~~~-~~ygv~~vPalvI--ng~~--~~~G~~p~~~el~~~l 75 (76)
T PF13192_consen 3 IKVFSPGCPYCPELVQLLKEAAEELG-IEVEIIDIEDF-EEI-EKYGVMSVPALVI--NGKV--VFVGRVPSKEELKELL 75 (76)
T ss_dssp EEEECSSCTTHHHHHHHHHHHHHHTT-EEEEEEETTTH-HHH-HHTT-SSSSEEEE--TTEE--EEESS--HHHHHHHHH
T ss_pred EEEeCCCCCCcHHHHHHHHHHHHhcC-CeEEEEEccCH-HHH-HHcCCCCCCEEEE--CCEE--EEEecCCCHHHHHHHh
Confidence 34478889999999999999999995 77777777655 666 9999999999966 7875 6888 78889999887
Q ss_pred H
Q psy5680 158 S 158 (201)
Q Consensus 158 ~ 158 (201)
+
T Consensus 76 ~ 76 (76)
T PF13192_consen 76 E 76 (76)
T ss_dssp H
T ss_pred C
Confidence 5
No 125
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=98.90 E-value=1.2e-08 Score=74.91 Aligned_cols=85 Identities=9% Similarity=0.145 Sum_probs=65.3
Q ss_pred CCCcEEEEEECCC-ChhhHhhHHHHHHHHHhCCCeEEEEEECCCC---------------------c-hhHHHHCCCCc-
Q psy5680 73 GRNPVLAYFFKPS-CGFCKQLEPKISTVSETTSGVEFVKINVENG---------------------G-GEIAREFEVQA- 128 (201)
Q Consensus 73 ~~~~vvv~f~a~w-C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~---------------------~-~~l~~~~~v~~- 128 (201)
.+++++++||+.| |++|+...+.+++++++++++.++.|+.+.. . ..+++.|++..
T Consensus 25 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~~ 104 (143)
T cd03014 25 AGKVKVISVFPSIDTPVCATQTKRFNKEAAKLDNTVVLTISADLPFAQKRWCGAEGVDNVTTLSDFRDHSFGKAYGVLIK 104 (143)
T ss_pred CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcCCCEEEEEECCCHHHHHHHHHhcCCCCceEeecCcccHHHHHhCCeec
Confidence 6889999999998 6999999999999999998888888887632 1 35667888763
Q ss_pred -----ccEEEEE-eCCeEEEEEeCC--CCHHHHHHHH
Q psy5680 129 -----VPTVIGF-RNGDPVDMVVGN--ADQDVIQTLV 157 (201)
Q Consensus 129 -----~Pti~~~-~~G~~v~~~~G~--~~~~~l~~~i 157 (201)
.|+.+++ ++|+++....|. ....++.+.|
T Consensus 105 ~~~~~~~~~~iid~~G~I~~~~~~~~~~~~~~~~~~~ 141 (143)
T cd03014 105 DLGLLARAVFVIDENGKVIYVELVPEITDEPDYEAAL 141 (143)
T ss_pred cCCccceEEEEEcCCCeEEEEEECCCcccCCCHHHHh
Confidence 6888888 689888877753 3344454443
No 126
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.90 E-value=3.3e-08 Score=77.67 Aligned_cols=84 Identities=15% Similarity=0.382 Sum_probs=70.6
Q ss_pred CCCcEEEEEECCCChhhHhhHHHHHHHHHhCCCeEEEEEECCCC----------chhHHHHCCCCcccEEEEEe-CC-eE
Q psy5680 73 GRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENG----------GGEIAREFEVQAVPTVIGFR-NG-DP 140 (201)
Q Consensus 73 ~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~----------~~~l~~~~~v~~~Pti~~~~-~G-~~ 140 (201)
.++.-+++||.+.|+.|..+.|.+..++++| ++.+..|++|.. +++++++|+|..+|+++++. ++ +.
T Consensus 119 a~~~gL~~F~~~~C~~C~~~~pil~~~~~~y-g~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~~~~~ 197 (215)
T PF13728_consen 119 AQKYGLFFFYRSDCPYCQQQAPILQQFADKY-GFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPNTKKW 197 (215)
T ss_pred hhCeEEEEEEcCCCchhHHHHHHHHHHHHHh-CCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECCCCeE
Confidence 5788899999999999999999999999999 677777777732 37899999999999999994 34 45
Q ss_pred EEEEeCCCCHHHHHHHH
Q psy5680 141 VDMVVGNADQDVIQTLV 157 (201)
Q Consensus 141 v~~~~G~~~~~~l~~~i 157 (201)
.....|..+.++|.+-|
T Consensus 198 ~pv~~G~~s~~~L~~ri 214 (215)
T PF13728_consen 198 YPVSQGFMSLDELEDRI 214 (215)
T ss_pred EEEeeecCCHHHHHHhh
Confidence 55788999999988654
No 127
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=98.89 E-value=2.8e-08 Score=76.47 Aligned_cols=88 Identities=13% Similarity=0.139 Sum_probs=67.4
Q ss_pred CCCcEEEEEE-CCCChhhHhhHHHHHHHHHhCCC--eEEEEEECCCC------------------------chhHHHHCC
Q psy5680 73 GRNPVLAYFF-KPSCGFCKQLEPKISTVSETTSG--VEFVKINVENG------------------------GGEIAREFE 125 (201)
Q Consensus 73 ~~~~vvv~f~-a~wC~~C~~~~~~l~~l~~~~~~--~~~~~vd~~~~------------------------~~~l~~~~~ 125 (201)
.+++++|+|| +.||+.|....+.+.++.+++.+ +.++.|.++.. +..+++.|+
T Consensus 30 ~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~g 109 (187)
T TIGR03137 30 KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNFG 109 (187)
T ss_pred CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHHhC
Confidence 6889999999 99999999999999999888853 77777776531 146778889
Q ss_pred CC------cccEEEEE-eCCeEEEEEeC----CCCHHHHHHHHHHH
Q psy5680 126 VQ------AVPTVIGF-RNGDPVDMVVG----NADQDVIQTLVSKL 160 (201)
Q Consensus 126 v~------~~Pti~~~-~~G~~v~~~~G----~~~~~~l~~~i~~~ 160 (201)
+. ..|+.+++ ++|++...+.+ ..+.+++++.|+.+
T Consensus 110 v~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~l~~~ 155 (187)
T TIGR03137 110 VLIEEAGLADRGTFVIDPEGVIQAVEITDNGIGRDASELLRKIKAA 155 (187)
T ss_pred CcccCCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 86 46988888 68888765533 24778888877554
No 128
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.89 E-value=7.8e-09 Score=67.49 Aligned_cols=70 Identities=21% Similarity=0.442 Sum_probs=51.1
Q ss_pred EEEEECCCChhhHhhHHHHHHHHHhCCCeEEEEEECCCCchhHHHH-----CCCCcccEEEEEeCCeEEEEEeCCCCHHH
Q psy5680 78 LAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIARE-----FEVQAVPTVIGFRNGDPVDMVVGNADQDV 152 (201)
Q Consensus 78 vv~f~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~l~~~-----~~v~~~Pti~~~~~G~~v~~~~G~~~~~~ 152 (201)
++.||++||++|+++.+.+.++ ++.+-.+|+++. +..... +++..+|++ ++.+|+.+. ..+..+
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~-----~~~~~~idi~~~-~~~~~~~~~~~~~~~~vP~i-~~~~g~~l~----~~~~~~ 70 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKL-----GAAYEWVDIEED-EGAADRVVSVNNGNMTVPTV-KFADGSFLT----NPSAAQ 70 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHc-----CCceEEEeCcCC-HhHHHHHHHHhCCCceeCEE-EECCCeEec----CCCHHH
Confidence 6789999999999999988775 345567888877 666555 389999997 467775532 355566
Q ss_pred HHHHHH
Q psy5680 153 IQTLVS 158 (201)
Q Consensus 153 l~~~i~ 158 (201)
+...|+
T Consensus 71 ~~~~l~ 76 (77)
T TIGR02200 71 VKAKLQ 76 (77)
T ss_pred HHHHhh
Confidence 665553
No 129
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=98.87 E-value=1.8e-08 Score=74.89 Aligned_cols=86 Identities=13% Similarity=0.152 Sum_probs=65.3
Q ss_pred CCCcEEEEEECC-CChhhHhhHHHHHHHHHhCCC--eEEEEEECCCC--------------------chhHHHHCCCCcc
Q psy5680 73 GRNPVLAYFFKP-SCGFCKQLEPKISTVSETTSG--VEFVKINVENG--------------------GGEIAREFEVQAV 129 (201)
Q Consensus 73 ~~~~vvv~f~a~-wC~~C~~~~~~l~~l~~~~~~--~~~~~vd~~~~--------------------~~~l~~~~~v~~~ 129 (201)
++++++|.||+. ||+.|....+.+.++++++.+ +.++.|+.+.. +..+.++|++...
T Consensus 29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~ 108 (154)
T PRK09437 29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVAEQFGVWGE 108 (154)
T ss_pred CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCCeEEECCCchHHHHhCCCcc
Confidence 688999999976 688899999999999888754 88888877644 2456788887654
Q ss_pred ------------cEEEEE-eCCeEEEEEeCCCCHHHHHHHHH
Q psy5680 130 ------------PTVIGF-RNGDPVDMVVGNADQDVIQTLVS 158 (201)
Q Consensus 130 ------------Pti~~~-~~G~~v~~~~G~~~~~~l~~~i~ 158 (201)
|+.+++ ++|+++..+.|....+.+.+.++
T Consensus 109 ~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~~~~~~~ 150 (154)
T PRK09437 109 KKFMGKTYDGIHRISFLIDADGKIEHVFDKFKTSNHHDVVLD 150 (154)
T ss_pred cccccccccCcceEEEEECCCCEEEEEEcCCCcchhHHHHHH
Confidence 666777 79999999999766655444333
No 130
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=98.87 E-value=2.4e-08 Score=75.82 Aligned_cols=88 Identities=16% Similarity=0.181 Sum_probs=67.7
Q ss_pred CCCcEEEEEE-CCCChhhHhhHHHHHHHHHhCCC--eEEEEEECCCC---------------------------chhHHH
Q psy5680 73 GRNPVLAYFF-KPSCGFCKQLEPKISTVSETTSG--VEFVKINVENG---------------------------GGEIAR 122 (201)
Q Consensus 73 ~~~~vvv~f~-a~wC~~C~~~~~~l~~l~~~~~~--~~~~~vd~~~~---------------------------~~~l~~ 122 (201)
++++++|+|| +.||+.|....+.+++++++|.+ +.++.|..+.. +..+.+
T Consensus 28 ~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~ 107 (173)
T cd03015 28 KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKISR 107 (173)
T ss_pred CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhHHH
Confidence 5789999999 89999999999999999999864 77777766532 134567
Q ss_pred HCCCC------cccEEEEE-eCCeEEEEEeCC----CCHHHHHHHHHHH
Q psy5680 123 EFEVQ------AVPTVIGF-RNGDPVDMVVGN----ADQDVIQTLVSKL 160 (201)
Q Consensus 123 ~~~v~------~~Pti~~~-~~G~~v~~~~G~----~~~~~l~~~i~~~ 160 (201)
+|++. ..|+.+++ ++|+++..+.+. .+.+++.+.|+.+
T Consensus 108 ~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~~~ 156 (173)
T cd03015 108 DYGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDAL 156 (173)
T ss_pred HhCCccccCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 88876 57888888 688888777543 3567788888665
No 131
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=98.85 E-value=1.3e-08 Score=72.47 Aligned_cols=70 Identities=26% Similarity=0.590 Sum_probs=59.5
Q ss_pred CCCcEEEEEECC-CChhhHhhHHHHHHHHHhCC--CeEEEEEECCCC--------------------chhHHHHCCCC--
Q psy5680 73 GRNPVLAYFFKP-SCGFCKQLEPKISTVSETTS--GVEFVKINVENG--------------------GGEIAREFEVQ-- 127 (201)
Q Consensus 73 ~~~~vvv~f~a~-wC~~C~~~~~~l~~l~~~~~--~~~~~~vd~~~~--------------------~~~l~~~~~v~-- 127 (201)
++++++|.||+. ||+.|....+.++++.++++ ++.++.|..+.. +..+.+.|++.
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 103 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKAFGIEDE 103 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHHTTCEET
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhhccccccccCcchHHHHHcCCccc
Confidence 689999999999 99999999999999999887 489988888755 25678899998
Q ss_pred ----cccEEEEE-eCCeEEE
Q psy5680 128 ----AVPTVIGF-RNGDPVD 142 (201)
Q Consensus 128 ----~~Pti~~~-~~G~~v~ 142 (201)
.+|+++++ ++|+++.
T Consensus 104 ~~~~~~p~~~lid~~g~I~~ 123 (124)
T PF00578_consen 104 KDTLALPAVFLIDPDGKIRY 123 (124)
T ss_dssp TTSEESEEEEEEETTSBEEE
T ss_pred cCCceEeEEEEECCCCEEEe
Confidence 89999999 5666543
No 132
>KOG2501|consensus
Probab=98.85 E-value=6e-09 Score=76.75 Aligned_cols=70 Identities=20% Similarity=0.394 Sum_probs=57.0
Q ss_pred CCCcEEEEEECCCChhhHhhHHHHHHHHHhCCC----eEEEEEECCCC------------------------chhHHHHC
Q psy5680 73 GRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG----VEFVKINVENG------------------------GGEIAREF 124 (201)
Q Consensus 73 ~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~----~~~~~vd~~~~------------------------~~~l~~~~ 124 (201)
.++.|.++|.|.||++|+.+-|.+.+++....+ +.++-|+-|.. -.++.++|
T Consensus 32 ~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky 111 (157)
T KOG2501|consen 32 QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKY 111 (157)
T ss_pred CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhc
Confidence 689999999999999999999999888776542 66666666655 15778899
Q ss_pred CCCcccEEEEE-eCCeEEE
Q psy5680 125 EVQAVPTVIGF-RNGDPVD 142 (201)
Q Consensus 125 ~v~~~Pti~~~-~~G~~v~ 142 (201)
.|.++|+++++ ++|..+.
T Consensus 112 ~v~~iP~l~i~~~dG~~v~ 130 (157)
T KOG2501|consen 112 EVKGIPALVILKPDGTVVT 130 (157)
T ss_pred ccCcCceeEEecCCCCEeh
Confidence 99999998888 7776654
No 133
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.83 E-value=2.7e-08 Score=61.17 Aligned_cols=60 Identities=30% Similarity=0.722 Sum_probs=51.0
Q ss_pred EEEEECCCChhhHhhHHHHHHHHHhCCCeEEEEEECCCCchhHHH---HCCCCcccEEEEEeCC
Q psy5680 78 LAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAR---EFEVQAVPTVIGFRNG 138 (201)
Q Consensus 78 vv~f~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~l~~---~~~v~~~Pti~~~~~G 138 (201)
++.||++||++|..+.+.+.++....+++.+..++++.. .+... .+++..+|+++++.+|
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDED-PALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCC-hHHhhHHHhCCCccccEEEEEeCC
Confidence 578999999999999999999844444599999999988 65554 8999999999999776
No 134
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=98.80 E-value=4.1e-08 Score=72.12 Aligned_cols=44 Identities=27% Similarity=0.545 Sum_probs=34.8
Q ss_pred CCCcEEEE-EECCCChhhHhhHHHHHHHHHhCC--CeEEEEEECCCC
Q psy5680 73 GRNPVLAY-FFKPSCGFCKQLEPKISTVSETTS--GVEFVKINVENG 116 (201)
Q Consensus 73 ~~~~vvv~-f~a~wC~~C~~~~~~l~~l~~~~~--~~~~~~vd~~~~ 116 (201)
.+++++|. |+++||+.|+...+.+.++.+++. ++.++.|+.+..
T Consensus 22 ~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~ 68 (149)
T cd02970 22 GEGPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESP 68 (149)
T ss_pred cCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCH
Confidence 34555555 469999999999999999999985 488888887755
No 135
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=98.80 E-value=4.1e-08 Score=73.26 Aligned_cols=83 Identities=16% Similarity=0.272 Sum_probs=59.4
Q ss_pred EEEeCCHhHHHHHHhCCCcEEEEEECCCChhhHhhHHHH---HHHHHhCCC-eEEEEEECCCCchhHHHHC--------C
Q psy5680 58 YLIIEKIDDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKI---STVSETTSG-VEFVKINVENGGGEIAREF--------E 125 (201)
Q Consensus 58 v~~l~~~~~~~~~~~~~~~vvv~f~a~wC~~C~~~~~~l---~~l~~~~~~-~~~~~vd~~~~~~~l~~~~--------~ 125 (201)
.... +.+.|+.+-.++|+++|.++.+||..|+.|.... .++++.+.. +.-++||.++. |++...| +
T Consensus 22 W~~w-~~ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~-Pdid~~y~~~~~~~~~ 99 (163)
T PF03190_consen 22 WQPW-GEEALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREER-PDIDKIYMNAVQAMSG 99 (163)
T ss_dssp -B-S-SHHHHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT--HHHHHHHHHHHHHHHS
T ss_pred cccC-CHHHHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccC-ccHHHHHHHHHHHhcC
Confidence 4555 6788888888999999999999999999998743 667766654 78889999999 9998888 7
Q ss_pred CCcccEEEEE-eCCeEEE
Q psy5680 126 VQAVPTVIGF-RNGDPVD 142 (201)
Q Consensus 126 v~~~Pti~~~-~~G~~v~ 142 (201)
..++|+.+|+ .+|+.+.
T Consensus 100 ~gGwPl~vfltPdg~p~~ 117 (163)
T PF03190_consen 100 SGGWPLTVFLTPDGKPFF 117 (163)
T ss_dssp ---SSEEEEE-TTS-EEE
T ss_pred CCCCCceEEECCCCCeee
Confidence 8999998888 7887764
No 136
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=98.76 E-value=1.9e-07 Score=66.31 Aligned_cols=91 Identities=13% Similarity=0.191 Sum_probs=70.5
Q ss_pred hCCCcEEEEEECC----CChhhHhhHHHHHHHHHhCCC-eEEEEEECCCC-chhHHHHCCCCcccEEEEE--eCC--eEE
Q psy5680 72 RGRNPVLAYFFKP----SCGFCKQLEPKISTVSETTSG-VEFVKINVENG-GGEIAREFEVQAVPTVIGF--RNG--DPV 141 (201)
Q Consensus 72 ~~~~~vvv~f~a~----wC~~C~~~~~~l~~l~~~~~~-~~~~~vd~~~~-~~~l~~~~~v~~~Pti~~~--~~G--~~v 141 (201)
.+.|.++|+++++ ||..|+..... +++.+-+.. +.+...|++.. +..++..+++.++|+++++ +++ +++
T Consensus 15 ~e~K~llVylhs~~~~~~~~fc~~~l~~-~~v~~~ln~~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~~~~~~~~vv 93 (116)
T cd02991 15 QELRFLLVYLHGDDHQDTDEFCRNTLCA-PEVIEYINTRMLFWACSVAKPEGYRVSQALRERTYPFLAMIMLKDNRMTIV 93 (116)
T ss_pred hhCCEEEEEEeCCCCccHHHHHHHHcCC-HHHHHHHHcCEEEEEEecCChHHHHHHHHhCCCCCCEEEEEEecCCceEEE
Confidence 7889999999999 88888554321 344444434 88889998755 3568899999999999888 233 457
Q ss_pred EEEeCCCCHHHHHHHHHHHHhh
Q psy5680 142 DMVVGNADQDVIQTLVSKLSQK 163 (201)
Q Consensus 142 ~~~~G~~~~~~l~~~i~~~~~~ 163 (201)
.+..|..+++++...|....+.
T Consensus 94 ~~i~G~~~~~~ll~~L~~~~~~ 115 (116)
T cd02991 94 GRLEGLIQPEDLINRLTFIMDA 115 (116)
T ss_pred EEEeCCCCHHHHHHHHHHHHhc
Confidence 8999999999999999987653
No 137
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=98.74 E-value=2.1e-07 Score=71.65 Aligned_cols=98 Identities=11% Similarity=0.171 Sum_probs=74.0
Q ss_pred EEEeCCHhHHHHHHhCCCcEEEEEE-CCCChhhHhhHHHHHHHHHhCCC--eEEEEEECCCC------------------
Q psy5680 58 YLIIEKIDDFKQTIRGRNPVLAYFF-KPSCGFCKQLEPKISTVSETTSG--VEFVKINVENG------------------ 116 (201)
Q Consensus 58 v~~l~~~~~~~~~~~~~~~vvv~f~-a~wC~~C~~~~~~l~~l~~~~~~--~~~~~vd~~~~------------------ 116 (201)
+.++ +-++| .++++++.|| +.||+.|....+.+.+..+++.+ +.++.|..|..
T Consensus 21 ~~~v-~L~d~-----~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~f 94 (187)
T PRK10382 21 FIEV-TEKDT-----EGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKY 94 (187)
T ss_pred ceEE-EHHHh-----CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCce
Confidence 4555 55555 6789999999 99999999999999999999853 77777776642
Q ss_pred ------chhHHHHCCCC----cc--cEEEEE-eCCeEEEEEeC----CCCHHHHHHHHHHHH
Q psy5680 117 ------GGEIAREFEVQ----AV--PTVIGF-RNGDPVDMVVG----NADQDVIQTLVSKLS 161 (201)
Q Consensus 117 ------~~~l~~~~~v~----~~--Pti~~~-~~G~~v~~~~G----~~~~~~l~~~i~~~~ 161 (201)
+..+++.|++. ++ |+.+++ ++|+++..+.. ..+.+++++.|+.+.
T Consensus 95 pllsD~~~~ia~~ygv~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~alq 156 (187)
T PRK10382 95 AMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQ 156 (187)
T ss_pred eEEEcCchHHHHHcCCCcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHhhh
Confidence 25677899983 55 998888 68887665432 258889988886653
No 138
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=98.72 E-value=1.2e-07 Score=69.91 Aligned_cols=85 Identities=22% Similarity=0.257 Sum_probs=62.5
Q ss_pred CC-CcEEEEEE-CCCChhhHhhHHHHHHHHHhCCC--eEEEEEECCCC--------------------c--hhHHHHCCC
Q psy5680 73 GR-NPVLAYFF-KPSCGFCKQLEPKISTVSETTSG--VEFVKINVENG--------------------G--GEIAREFEV 126 (201)
Q Consensus 73 ~~-~~vvv~f~-a~wC~~C~~~~~~l~~l~~~~~~--~~~~~vd~~~~--------------------~--~~l~~~~~v 126 (201)
++ ++++|.|| ++||+.|....+.++++.+++++ +.++.|+.+.. . ..+.+.|++
T Consensus 26 ~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~g~ 105 (149)
T cd03018 26 RGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAWAEENGLTFPLLSDFWPHGEVAKAYGV 105 (149)
T ss_pred cCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCCCceEecCCCchhHHHHHhCC
Confidence 44 78888887 99999999999999999999863 88888877653 1 456778888
Q ss_pred Cc----c--cEEEEE-eCCeEEEEEeCCC----CHHHHHHHH
Q psy5680 127 QA----V--PTVIGF-RNGDPVDMVVGNA----DQDVIQTLV 157 (201)
Q Consensus 127 ~~----~--Pti~~~-~~G~~v~~~~G~~----~~~~l~~~i 157 (201)
.. + |+.+++ ++|+++..+.|.. +..++.+.|
T Consensus 106 ~~~~~~~~~~~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~ 147 (149)
T cd03018 106 FDEDLGVAERAVFVIDRDGIIRYAWVSDDGEPRDLPDYDEAL 147 (149)
T ss_pred ccccCCCccceEEEECCCCEEEEEEecCCcccccchhHHHHh
Confidence 73 3 377777 6898888877743 344444443
No 139
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=98.72 E-value=6.2e-08 Score=70.12 Aligned_cols=74 Identities=16% Similarity=0.297 Sum_probs=51.6
Q ss_pred hCCCcEEEEEECCCChhhHhhHHHHHHHHHhCCCeEEEEEECCCCchhHHHHC---CCCcccEEEEE-eCCeEEEEEeC
Q psy5680 72 RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREF---EVQAVPTVIGF-RNGDPVDMVVG 146 (201)
Q Consensus 72 ~~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~l~~~~---~v~~~Pti~~~-~~G~~v~~~~G 146 (201)
-..+..++.|..+|||.|+...|.+.++++..+++.+-.+.-|++ +++..+| +..++|+++++ .+|+++.++..
T Consensus 39 ~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~~-~el~~~~lt~g~~~IP~~I~~d~~~~~lg~wge 116 (129)
T PF14595_consen 39 IQKPYNILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRDEN-KELMDQYLTNGGRSIPTFIFLDKDGKELGRWGE 116 (129)
T ss_dssp --S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHH-HHHTTTTTT-SS--SSEEEEE-TT--EEEEEES
T ss_pred cCCCcEEEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEecCC-hhHHHHHHhCCCeecCEEEEEcCCCCEeEEEcC
Confidence 456678999999999999999999999999998877767777777 7766655 67899999999 56788777765
No 140
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=98.71 E-value=1.9e-07 Score=62.54 Aligned_cols=77 Identities=14% Similarity=0.392 Sum_probs=59.1
Q ss_pred EEEEEECCCChhhHhhHHHHHHHHHhCCCeEEEEEECCCCc---hhHHHHCC--CCcccEEEEEeCCeEEEEEeCCCCHH
Q psy5680 77 VLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGG---GEIAREFE--VQAVPTVIGFRNGDPVDMVVGNADQD 151 (201)
Q Consensus 77 vvv~f~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~---~~l~~~~~--v~~~Pti~~~~~G~~v~~~~G~~~~~ 151 (201)
-++.|+.+||++|++....|+++..++.++.+..+|+++.. .++....+ +..+|++++ +|+.+ ...+
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi--~g~~i------gg~~ 73 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFV--DQKHI------GGCT 73 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEE--CCEEE------cCHH
Confidence 47899999999999999999999988777888899988751 24555554 478999864 77654 2457
Q ss_pred HHHHHHHHHH
Q psy5680 152 VIQTLVSKLS 161 (201)
Q Consensus 152 ~l~~~i~~~~ 161 (201)
++.++++.++
T Consensus 74 ~~~~~~~~~~ 83 (85)
T PRK11200 74 DFEAYVKENL 83 (85)
T ss_pred HHHHHHHHhc
Confidence 7777777654
No 141
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=98.71 E-value=3.6e-07 Score=73.27 Aligned_cols=90 Identities=13% Similarity=0.271 Sum_probs=74.1
Q ss_pred CCCcEEEEEECCCChhhHhhHHHHHHHHHhCCCeEEEEEECCCC----------chhHHHHCCCCcccEEEEEe-C-CeE
Q psy5680 73 GRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENG----------GGEIAREFEVQAVPTVIGFR-N-GDP 140 (201)
Q Consensus 73 ~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~----------~~~l~~~~~v~~~Pti~~~~-~-G~~ 140 (201)
.++.-+++||.+.|+.|..+.|.++.++++|+ +.+..|++|.. +..++++++|..+|+++++. + ++.
T Consensus 149 a~~~gL~fFy~~~C~~C~~~apil~~fa~~yg-i~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~t~~~ 227 (256)
T TIGR02739 149 SQSYGLFFFYRGKSPISQKMAPVIQAFAKEYG-ISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPKSQKM 227 (256)
T ss_pred HhceeEEEEECCCCchhHHHHHHHHHHHHHhC-CeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECCCCcE
Confidence 45689999999999999999999999999995 67777777754 24588999999999998883 3 444
Q ss_pred EEEEeCCCCHHHHHHHHHHHHhh
Q psy5680 141 VDMVVGNADQDVIQTLVSKLSQK 163 (201)
Q Consensus 141 v~~~~G~~~~~~l~~~i~~~~~~ 163 (201)
...-.|..+.++|.+-|......
T Consensus 228 ~pv~~G~iS~deL~~Ri~~v~~~ 250 (256)
T TIGR02739 228 SPLAYGFISQDELKERILNVLTQ 250 (256)
T ss_pred EEEeeccCCHHHHHHHHHHHHhc
Confidence 55788999999999988776543
No 142
>PRK13190 putative peroxiredoxin; Provisional
Probab=98.67 E-value=2e-07 Score=72.65 Aligned_cols=90 Identities=22% Similarity=0.134 Sum_probs=68.1
Q ss_pred CCCcEEE-EEECCCChhhHhhHHHHHHHHHhCCC--eEEEEEECCCC--------------------------chhHHHH
Q psy5680 73 GRNPVLA-YFFKPSCGFCKQLEPKISTVSETTSG--VEFVKINVENG--------------------------GGEIARE 123 (201)
Q Consensus 73 ~~~~vvv-~f~a~wC~~C~~~~~~l~~l~~~~~~--~~~~~vd~~~~--------------------------~~~l~~~ 123 (201)
+++.+++ .||++||+.|....+.+.++++++.+ +.++.|.++.. +..+++.
T Consensus 26 ~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~ 105 (202)
T PRK13190 26 KGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELARE 105 (202)
T ss_pred CCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHHH
Confidence 5666655 68999999999999999999888863 77777766632 2567788
Q ss_pred CCCC------cccEEEEE-eCCeEEEEE----eCCCCHHHHHHHHHHHHh
Q psy5680 124 FEVQ------AVPTVIGF-RNGDPVDMV----VGNADQDVIQTLVSKLSQ 162 (201)
Q Consensus 124 ~~v~------~~Pti~~~-~~G~~v~~~----~G~~~~~~l~~~i~~~~~ 162 (201)
|++. .+|+++++ ++|++.... .+..+.+++.+.|+.+..
T Consensus 106 ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l~~ 155 (202)
T PRK13190 106 YNLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKALQV 155 (202)
T ss_pred cCCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhhh
Confidence 8884 58999999 677776543 333799999999987654
No 143
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=98.66 E-value=1.2e-07 Score=72.73 Aligned_cols=41 Identities=10% Similarity=0.201 Sum_probs=36.6
Q ss_pred CCCcEEEEEECCCChhhHhhHHHHHHHHHhCCC--eEEEEEECC
Q psy5680 73 GRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG--VEFVKINVE 114 (201)
Q Consensus 73 ~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~--~~~~~vd~~ 114 (201)
++++++|.|||+||+.|. ..+.|++++++|++ +.++.+.|+
T Consensus 24 ~GKvvLVvf~AS~C~~~~-q~~~L~~L~~~y~~~gl~Vlg~p~n 66 (183)
T PRK10606 24 AGNVLLIVNVASKCGLTP-QYEQLENIQKAWADQGFVVLGFPCN 66 (183)
T ss_pred CCCEEEEEEEeCCCCCcH-HHHHHHHHHHHHhhCCeEEEEeecc
Confidence 689999999999999996 58899999999974 899999885
No 144
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=98.63 E-value=2.5e-07 Score=64.33 Aligned_cols=93 Identities=13% Similarity=0.197 Sum_probs=75.7
Q ss_pred EEEeCCHhHHHHHHhCCCcEEEEEECCC--ChhhHhhHHHHHHHHHhCCC-eEEEEEECCCCchhHHHHCCCCcccEEEE
Q psy5680 58 YLIIEKIDDFKQTIRGRNPVLAYFFKPS--CGFCKQLEPKISTVSETTSG-VEFVKINVENGGGEIAREFEVQAVPTVIG 134 (201)
Q Consensus 58 v~~l~~~~~~~~~~~~~~~vvv~f~a~w--C~~C~~~~~~l~~l~~~~~~-~~~~~vd~~~~~~~l~~~~~v~~~Pti~~ 134 (201)
+..+ +.++++..+...+..+++|..+. |+.|....-.+.++.+.+++ +..+.++-+.. .++..+|++..+|++++
T Consensus 11 ~~~v-d~~~ld~~l~~~~~~vlf~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~~~~e-~~L~~r~gv~~~PaLvf 88 (107)
T PF07449_consen 11 WPRV-DADTLDAFLAAPGDAVLFFAGDPARFPETADVAVILPELVKAFPGRFRGAVVARAAE-RALAARFGVRRWPALVF 88 (107)
T ss_dssp EEEE--CCCHHHHHHCCSCEEEEESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHHHH-HHHHHHHT-TSSSEEEE
T ss_pred Ceee-chhhHHHHHhCCCcEEEEECCCCCcCcccccceeEcHHHHHhhhCccceEEECchhH-HHHHHHhCCccCCeEEE
Confidence 7888 88999999977777777666553 57777777789999999999 77777775566 89999999999999999
Q ss_pred EeCCeEEEEEeCCCCHHH
Q psy5680 135 FRNGDPVDMVVGNADQDV 152 (201)
Q Consensus 135 ~~~G~~v~~~~G~~~~~~ 152 (201)
+++|+.+....|..+.++
T Consensus 89 ~R~g~~lG~i~gi~dW~d 106 (107)
T PF07449_consen 89 FRDGRYLGAIEGIRDWAD 106 (107)
T ss_dssp EETTEEEEEEESSSTHHH
T ss_pred EECCEEEEEecCeecccc
Confidence 999999999999777664
No 145
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=98.63 E-value=1.6e-07 Score=68.57 Aligned_cols=43 Identities=26% Similarity=0.409 Sum_probs=37.3
Q ss_pred CCCcEEEEEECCCChh-hHhhHHHHHHHHHhCCC-----eEEEEEECCC
Q psy5680 73 GRNPVLAYFFKPSCGF-CKQLEPKISTVSETTSG-----VEFVKINVEN 115 (201)
Q Consensus 73 ~~~~vvv~f~a~wC~~-C~~~~~~l~~l~~~~~~-----~~~~~vd~~~ 115 (201)
++++++|.||++||++ |....+.++++.+++.+ +.++.|..+.
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~ 69 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDP 69 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECC
Confidence 6899999999999998 99999999999888753 7888887653
No 146
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=98.62 E-value=1.6e-07 Score=68.37 Aligned_cols=76 Identities=18% Similarity=0.266 Sum_probs=60.1
Q ss_pred CCCcEEEEEE-CCCChhhHhhHHHHHHHHHhCC--CeEEEEEECCCC---------------------chhHHHHCCCCc
Q psy5680 73 GRNPVLAYFF-KPSCGFCKQLEPKISTVSETTS--GVEFVKINVENG---------------------GGEIAREFEVQA 128 (201)
Q Consensus 73 ~~~~vvv~f~-a~wC~~C~~~~~~l~~l~~~~~--~~~~~~vd~~~~---------------------~~~l~~~~~v~~ 128 (201)
.+++++|.|| +.||+.|....+.+.++++++. ++.++.|..+.. +..+.+.|++..
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g~~~ 100 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKEGGLNFPLLSDPDGEFAKAYGVLI 100 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcccCCCceEEECCChHHHHHcCCcc
Confidence 6899999999 7899999999999999998874 377877777543 145667888776
Q ss_pred cc---------EEEEE-eCCeEEEEEeCCC
Q psy5680 129 VP---------TVIGF-RNGDPVDMVVGNA 148 (201)
Q Consensus 129 ~P---------ti~~~-~~G~~v~~~~G~~ 148 (201)
.| +++++ ++|+++..+.|..
T Consensus 101 ~~~~~~~~~~p~~~lid~~g~i~~~~~~~~ 130 (140)
T cd02971 101 EKSAGGGLAARATFIIDPDGKIRYVEVEPL 130 (140)
T ss_pred ccccccCceeEEEEEECCCCcEEEEEecCC
Confidence 65 67777 5788888888854
No 147
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.62 E-value=1.6e-07 Score=62.29 Aligned_cols=60 Identities=20% Similarity=0.409 Sum_probs=45.9
Q ss_pred EEEEECCCChhhHhhHHHHHHHHHhCCC-eEEEEEECCCCch----hHHHHCCCCcccEEEEEeCCeEE
Q psy5680 78 LAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENGGG----EIAREFEVQAVPTVIGFRNGDPV 141 (201)
Q Consensus 78 vv~f~a~wC~~C~~~~~~l~~l~~~~~~-~~~~~vd~~~~~~----~l~~~~~v~~~Pti~~~~~G~~v 141 (201)
++.|+++||++|+.+.+.+.++. .++ +.++.+|.+.+.. .+.+.+++..+|++++ +|+.+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i--~g~~i 65 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFI--NGKFI 65 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEE--CCEEE
Confidence 57899999999999999999986 333 7788888775512 2566779999999854 67543
No 148
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=98.62 E-value=1e-06 Score=70.39 Aligned_cols=90 Identities=17% Similarity=0.232 Sum_probs=72.7
Q ss_pred CCCcEEEEEECCCChhhHhhHHHHHHHHHhCCCeEEEEEECCCC----------chhHHHHCCCCcccEEEEEe-C-CeE
Q psy5680 73 GRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENG----------GGEIAREFEVQAVPTVIGFR-N-GDP 140 (201)
Q Consensus 73 ~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~----------~~~l~~~~~v~~~Pti~~~~-~-G~~ 140 (201)
.++.-+++||.+.|+.|..+.|.++.++++|+ +.+..|++|.. +...+++++|..+|+++++. + ++.
T Consensus 142 a~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg-~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~~~ 220 (248)
T PRK13703 142 AEHYGLMFFYRGQDPIDGQLAQVINDFRDTYG-LSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSGSV 220 (248)
T ss_pred HhcceEEEEECCCCchhHHHHHHHHHHHHHhC-CeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCCcE
Confidence 45689999999999999999999999999994 66666666642 24567899999999999993 3 355
Q ss_pred EEEEeCCCCHHHHHHHHHHHHhh
Q psy5680 141 VDMVVGNADQDVIQTLVSKLSQK 163 (201)
Q Consensus 141 v~~~~G~~~~~~l~~~i~~~~~~ 163 (201)
.....|..+.++|.+-|......
T Consensus 221 ~pv~~G~iS~deL~~Ri~~v~t~ 243 (248)
T PRK13703 221 RPLSYGFITQDDLAKRFLNVSTD 243 (248)
T ss_pred EEEeeccCCHHHHHHHHHHHHhc
Confidence 56788999999999988776543
No 149
>PRK15000 peroxidase; Provisional
Probab=98.61 E-value=4.6e-07 Score=70.51 Aligned_cols=89 Identities=18% Similarity=0.243 Sum_probs=69.6
Q ss_pred CCCcEEEEEEC-CCChhhHhhHHHHHHHHHhCCC--eEEEEEECCCC---------------------------chhHHH
Q psy5680 73 GRNPVLAYFFK-PSCGFCKQLEPKISTVSETTSG--VEFVKINVENG---------------------------GGEIAR 122 (201)
Q Consensus 73 ~~~~vvv~f~a-~wC~~C~~~~~~l~~l~~~~~~--~~~~~vd~~~~---------------------------~~~l~~ 122 (201)
++++++++||+ +||+.|....+.+.++++++.+ +.++.|.+|.. +..+++
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~ 112 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQK 112 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHHH
Confidence 57899999999 5999999999999999999864 77777777632 135667
Q ss_pred HCCCC------cccEEEEE-eCCeEEEEEeCC----CCHHHHHHHHHHHH
Q psy5680 123 EFEVQ------AVPTVIGF-RNGDPVDMVVGN----ADQDVIQTLVSKLS 161 (201)
Q Consensus 123 ~~~v~------~~Pti~~~-~~G~~v~~~~G~----~~~~~l~~~i~~~~ 161 (201)
.|++. .+|+.+++ ++|++...+.|. .+.+++++.|+.+.
T Consensus 113 ~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l~al~ 162 (200)
T PRK15000 113 AYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVDALQ 162 (200)
T ss_pred HcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence 78887 68999998 588877765542 47888888887643
No 150
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=98.55 E-value=2.5e-06 Score=64.71 Aligned_cols=100 Identities=14% Similarity=0.341 Sum_probs=85.0
Q ss_pred EEEeCCHhHHHHHHhCCCc-EEEEEECCCChhhHhhHHHHHHHHHhCCC-eEEEEEECCCCchhHHHHCCCC--cccEEE
Q psy5680 58 YLIIEKIDDFKQTIRGRNP-VLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENGGGEIAREFEVQ--AVPTVI 133 (201)
Q Consensus 58 v~~l~~~~~~~~~~~~~~~-vvv~f~a~wC~~C~~~~~~l~~l~~~~~~-~~~~~vd~~~~~~~l~~~~~v~--~~Pti~ 133 (201)
+.++ |.+++..+...+.+ +++.|..........+...+..+++++++ +.|+.+|++.. +.+.+.+++. .+|+++
T Consensus 79 v~~~-t~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~~-~~~~~~~~i~~~~~P~~v 156 (184)
T PF13848_consen 79 VPEL-TPENFEKLFSSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADDF-PRLLKYFGIDEDDLPALV 156 (184)
T ss_dssp CEEE-STTHHHHHHSTSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTTT-HHHHHHTTTTTSSSSEEE
T ss_pred cccc-chhhHHHHhcCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHHh-HHHHHHcCCCCccCCEEE
Confidence 8899 99999999966665 78888777788889999999999999999 99999999988 8999999998 899999
Q ss_pred EEe--CCeEEEEEeCCCCHHHHHHHHHH
Q psy5680 134 GFR--NGDPVDMVVGNADQDVIQTLVSK 159 (201)
Q Consensus 134 ~~~--~G~~v~~~~G~~~~~~l~~~i~~ 159 (201)
++. +++.-....|..+.+.+.+|+++
T Consensus 157 i~~~~~~~~~~~~~~~~~~~~i~~Fl~d 184 (184)
T PF13848_consen 157 IFDSNKGKYYYLPEGEITPESIEKFLND 184 (184)
T ss_dssp EEETTTSEEEE--SSCGCHHHHHHHHHH
T ss_pred EEECCCCcEEcCCCCCCCHHHHHHHhcC
Confidence 996 44433334788999999999874
No 151
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.54 E-value=1e-06 Score=78.62 Aligned_cols=90 Identities=17% Similarity=0.311 Sum_probs=74.5
Q ss_pred CHhHHHHHHhCCCcE-EEEEECCCChhhHhhHHHHHHHHHhCCCeEEEEEECCCCchhHHHHCCCCcccEEEEEeCCeEE
Q psy5680 63 KIDDFKQTIRGRNPV-LAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTVIGFRNGDPV 141 (201)
Q Consensus 63 ~~~~~~~~~~~~~~v-vv~f~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~l~~~~~v~~~Pti~~~~~G~~v 141 (201)
+.+..+.+-.-++++ +-.|.++||++|......+++++...+++..-.+|.... ++++++|+|.++|++++ +|+++
T Consensus 464 ~~~~~~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~-~~~~~~~~v~~vP~~~i--~~~~~ 540 (555)
T TIGR03143 464 GEELLEKIKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSHF-PDLKDEYGIMSVPAIVV--DDQQV 540 (555)
T ss_pred CHHHHHHHHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECccc-HHHHHhCCceecCEEEE--CCEEE
Confidence 444444443335565 556689999999999999999999999999999999999 99999999999999998 67653
Q ss_pred EEEeCCCCHHHHHHHH
Q psy5680 142 DMVVGNADQDVIQTLV 157 (201)
Q Consensus 142 ~~~~G~~~~~~l~~~i 157 (201)
+.|..+.+++..+|
T Consensus 541 --~~G~~~~~~~~~~~ 554 (555)
T TIGR03143 541 --YFGKKTIEEMLELI 554 (555)
T ss_pred --EeeCCCHHHHHHhh
Confidence 56888999999886
No 152
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=98.53 E-value=4.3e-07 Score=64.51 Aligned_cols=76 Identities=18% Similarity=0.461 Sum_probs=52.5
Q ss_pred CHhHHHHHH----hCCCcEEEEEECC-------CChhhHhhHHHHHHHHHhCCC-eEEEEEECCCC------chhHHH--
Q psy5680 63 KIDDFKQTI----RGRNPVLAYFFKP-------SCGFCKQLEPKISTVSETTSG-VEFVKINVENG------GGEIAR-- 122 (201)
Q Consensus 63 ~~~~~~~~~----~~~~~vvv~f~a~-------wC~~C~~~~~~l~~l~~~~~~-~~~~~vd~~~~------~~~l~~-- 122 (201)
.-++|.+++ ..+++++|+|+++ |||.|....|.+++.....++ ..++.+.+... +..+..
T Consensus 4 gy~~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p 83 (119)
T PF06110_consen 4 GYDEFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDP 83 (119)
T ss_dssp CHHHHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--
T ss_pred CHHHHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcc
Confidence 456777777 4668999999854 999999999999888877765 88888877432 023444
Q ss_pred HCCCCcccEEEEEeCC
Q psy5680 123 EFEVQAVPTVIGFRNG 138 (201)
Q Consensus 123 ~~~v~~~Pti~~~~~G 138 (201)
++++.++||++-+..+
T Consensus 84 ~~~l~~IPTLi~~~~~ 99 (119)
T PF06110_consen 84 DLKLKGIPTLIRWETG 99 (119)
T ss_dssp CC---SSSEEEECTSS
T ss_pred eeeeeecceEEEECCC
Confidence 5999999999999766
No 153
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.49 E-value=1.4e-06 Score=55.74 Aligned_cols=68 Identities=24% Similarity=0.547 Sum_probs=49.0
Q ss_pred EEEEECCCChhhHhhHHHHHHHHHhCCCeEEEEEECCCCchhHHHHC----CCCcccEEEEEeCCeEEEEEeCCCCHHHH
Q psy5680 78 LAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREF----EVQAVPTVIGFRNGDPVDMVVGNADQDVI 153 (201)
Q Consensus 78 vv~f~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~l~~~~----~v~~~Pti~~~~~G~~v~~~~G~~~~~~l 153 (201)
++.|+++||++|..+...+.+ .++.+..+|++.. +...+.+ ++..+|++++ +|+ .+.| .+.+.+
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~-----~~i~~~~~~i~~~-~~~~~~~~~~~~~~~vP~i~~--~~~---~i~g-~~~~~l 69 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDE-----RGIPFEEVDVDED-PEALEELKKLNGYRSVPVVVI--GDE---HLSG-FRPDKL 69 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHH-----CCCCeEEEeCCCC-HHHHHHHHHHcCCcccCEEEE--CCE---EEec-CCHHHH
Confidence 578999999999998887766 2566777888776 5544433 6889999976 452 4566 666777
Q ss_pred HHHH
Q psy5680 154 QTLV 157 (201)
Q Consensus 154 ~~~i 157 (201)
.++|
T Consensus 70 ~~~~ 73 (73)
T cd02976 70 RALL 73 (73)
T ss_pred HhhC
Confidence 6653
No 154
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=98.49 E-value=1.3e-06 Score=58.70 Aligned_cols=75 Identities=17% Similarity=0.394 Sum_probs=56.5
Q ss_pred EEEEECCCChhhHhhHHHHHHHHHhCCCeEEEEEECCCCc---hhHHHHCCC--CcccEEEEEeCCeEEEEEeCCCCHHH
Q psy5680 78 LAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGG---GEIAREFEV--QAVPTVIGFRNGDPVDMVVGNADQDV 152 (201)
Q Consensus 78 vv~f~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~---~~l~~~~~v--~~~Pti~~~~~G~~v~~~~G~~~~~~ 152 (201)
++.|+.+|||+|.++...|+++...++++.+..+|++... .++.+..+- ..+|++++ +|+.+ ...++
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi--~g~~i------gG~~d 73 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFV--DEKHV------GGCTD 73 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEE--CCEEe------cCHHH
Confidence 6889999999999999999998777767788888887540 356666664 78999955 66543 24577
Q ss_pred HHHHHHHH
Q psy5680 153 IQTLVSKL 160 (201)
Q Consensus 153 l~~~i~~~ 160 (201)
|.+++++.
T Consensus 74 l~~~~~~~ 81 (86)
T TIGR02183 74 FEQLVKEN 81 (86)
T ss_pred HHHHHHhc
Confidence 88877664
No 155
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=98.47 E-value=1.6e-06 Score=60.03 Aligned_cols=95 Identities=17% Similarity=0.266 Sum_probs=67.5
Q ss_pred EEeCCHhHHHHHH--hCCCcEEEEEECCCChhhHhhHHHHHHHHHhCCC-eEEEEEECCCC---chhHHHHCCCCc-ccE
Q psy5680 59 LIIEKIDDFKQTI--RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENG---GGEIAREFEVQA-VPT 131 (201)
Q Consensus 59 ~~l~~~~~~~~~~--~~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~-~~~~~vd~~~~---~~~l~~~~~v~~-~Pt 131 (201)
.+|++.+++++++ +.+++++++=.++.||-.......+++.....++ +.++.+|+-+. +..++++|||.. -|.
T Consensus 2 ~~L~t~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ 81 (105)
T PF11009_consen 2 KPLTTEEQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHESPQ 81 (105)
T ss_dssp -E--SHHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----SSE
T ss_pred CccCCHHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCCCc
Confidence 4677899999999 5599999999999999999999999999999887 99999999877 235678999987 599
Q ss_pred EEEEeCCeEEEEEe-CCCCHHHH
Q psy5680 132 VIGFRNGDPVDMVV-GNADQDVI 153 (201)
Q Consensus 132 i~~~~~G~~v~~~~-G~~~~~~l 153 (201)
++++++|+.+..-. ...+.+.|
T Consensus 82 ~ili~~g~~v~~aSH~~It~~~l 104 (105)
T PF11009_consen 82 VILIKNGKVVWHASHWDITAEAL 104 (105)
T ss_dssp EEEEETTEEEEEEEGGG-SHHHH
T ss_pred EEEEECCEEEEECccccCCHHhc
Confidence 99999999886433 22555544
No 156
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=98.44 E-value=1.9e-06 Score=67.11 Aligned_cols=87 Identities=14% Similarity=0.117 Sum_probs=64.7
Q ss_pred cEEEEEECCCChhhHhhHHHHHHHHHhCCC--eEEEEEECCCC--------------------------chhHHHHCCCC
Q psy5680 76 PVLAYFFKPSCGFCKQLEPKISTVSETTSG--VEFVKINVENG--------------------------GGEIAREFEVQ 127 (201)
Q Consensus 76 ~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~--~~~~~vd~~~~--------------------------~~~l~~~~~v~ 127 (201)
.+++.|+++||+.|....+.+.++++++.+ +.++.|.+|.. +..+++.|++.
T Consensus 28 vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~yg~~ 107 (203)
T cd03016 28 GILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREVAKLLGMI 107 (203)
T ss_pred EEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHHHHHHcCCc
Confidence 456689999999999999999999999864 88888877642 24667888875
Q ss_pred ----c----ccEEEEE-eCCeEEEEEeC----CCCHHHHHHHHHHHHh
Q psy5680 128 ----A----VPTVIGF-RNGDPVDMVVG----NADQDVIQTLVSKLSQ 162 (201)
Q Consensus 128 ----~----~Pti~~~-~~G~~v~~~~G----~~~~~~l~~~i~~~~~ 162 (201)
+ +|+.+++ ++|++...+.+ ..+.+++.+.|+.+..
T Consensus 108 ~~~~~~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~~ell~~l~~lq~ 155 (203)
T cd03016 108 DPDAGSTLTVRAVFIIDPDKKIRLILYYPATTGRNFDEILRVVDALQL 155 (203)
T ss_pred cccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHHhh
Confidence 2 3457777 68877666544 2567888888877543
No 157
>PRK13189 peroxiredoxin; Provisional
Probab=98.43 E-value=2.2e-06 Score=67.75 Aligned_cols=89 Identities=18% Similarity=0.156 Sum_probs=66.0
Q ss_pred CCCc-EEEEEECCCChhhHhhHHHHHHHHHhCCC--eEEEEEECCCC--------------------------chhHHHH
Q psy5680 73 GRNP-VLAYFFKPSCGFCKQLEPKISTVSETTSG--VEFVKINVENG--------------------------GGEIARE 123 (201)
Q Consensus 73 ~~~~-vvv~f~a~wC~~C~~~~~~l~~l~~~~~~--~~~~~vd~~~~--------------------------~~~l~~~ 123 (201)
+++. +|+.|+++||+.|....+.+.+++++|.+ +.++.|.+|.. +..+++.
T Consensus 34 ~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~~ 113 (222)
T PRK13189 34 KGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAKK 113 (222)
T ss_pred CCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHHH
Confidence 4664 45578899999999999999999998863 77777776643 1456778
Q ss_pred CCCC-------cccEEEEE-eCCeEEEEEe----CCCCHHHHHHHHHHHH
Q psy5680 124 FEVQ-------AVPTVIGF-RNGDPVDMVV----GNADQDVIQTLVSKLS 161 (201)
Q Consensus 124 ~~v~-------~~Pti~~~-~~G~~v~~~~----G~~~~~~l~~~i~~~~ 161 (201)
|++. .+|+++++ ++|++..... ...+.+++.+.|+.+.
T Consensus 114 ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~alq 163 (222)
T PRK13189 114 LGMISPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLVKALQ 163 (222)
T ss_pred hCCCccccCCCceeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence 8875 46888888 5887765543 2257888988887654
No 158
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=98.41 E-value=3.2e-06 Score=68.19 Aligned_cols=89 Identities=13% Similarity=0.122 Sum_probs=67.8
Q ss_pred CCCcEEEEEE-CCCChhhHhhHHHHHHHHHhCCC--eEEEEEECCCC---------------------------chhHHH
Q psy5680 73 GRNPVLAYFF-KPSCGFCKQLEPKISTVSETTSG--VEFVKINVENG---------------------------GGEIAR 122 (201)
Q Consensus 73 ~~~~vvv~f~-a~wC~~C~~~~~~l~~l~~~~~~--~~~~~vd~~~~---------------------------~~~l~~ 122 (201)
++++++++|| +.||+.|....+.+.+.++++.+ +.++.|.+|.. +..+++
T Consensus 97 kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iak 176 (261)
T PTZ00137 97 KDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVSK 176 (261)
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHHH
Confidence 4667888877 89999999999999999999863 77777777642 246778
Q ss_pred HCCCC-----cccEEEEE-eCCeEEEEEe----CCCCHHHHHHHHHHHH
Q psy5680 123 EFEVQ-----AVPTVIGF-RNGDPVDMVV----GNADQDVIQTLVSKLS 161 (201)
Q Consensus 123 ~~~v~-----~~Pti~~~-~~G~~v~~~~----G~~~~~~l~~~i~~~~ 161 (201)
.||+. ..|+.+++ ++|++...+. ...+.+++.+.|+...
T Consensus 177 ayGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~alq 225 (261)
T PTZ00137 177 SFGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFDAVQ 225 (261)
T ss_pred HcCCCCcCCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhc
Confidence 99985 58999999 5888766442 2258888888887553
No 159
>PRK13599 putative peroxiredoxin; Provisional
Probab=98.41 E-value=2.9e-06 Score=66.74 Aligned_cols=88 Identities=14% Similarity=0.115 Sum_probs=67.0
Q ss_pred CCCc-EEEEEECCCChhhHhhHHHHHHHHHhCC--CeEEEEEECCCC--------------------------chhHHHH
Q psy5680 73 GRNP-VLAYFFKPSCGFCKQLEPKISTVSETTS--GVEFVKINVENG--------------------------GGEIARE 123 (201)
Q Consensus 73 ~~~~-vvv~f~a~wC~~C~~~~~~l~~l~~~~~--~~~~~~vd~~~~--------------------------~~~l~~~ 123 (201)
.++. +++.|+++||+.|....+.+.+++++|. ++.++.+.+|.. +..+++.
T Consensus 27 ~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~ 106 (215)
T PRK13599 27 AGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQ 106 (215)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHHH
Confidence 4565 4679999999999999999999999985 388888877753 1456778
Q ss_pred CCCC-------cccEEEEE-eCCeEEEEEeC----CCCHHHHHHHHHHH
Q psy5680 124 FEVQ-------AVPTVIGF-RNGDPVDMVVG----NADQDVIQTLVSKL 160 (201)
Q Consensus 124 ~~v~-------~~Pti~~~-~~G~~v~~~~G----~~~~~~l~~~i~~~ 160 (201)
||+. .+|+++++ ++|++...+.. ..+.+++++.|+.+
T Consensus 107 yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~l 155 (215)
T PRK13599 107 LGMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKAL 155 (215)
T ss_pred cCCCccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHh
Confidence 8873 57999999 57887654431 25788888888765
No 160
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=98.40 E-value=4.1e-06 Score=66.62 Aligned_cols=82 Identities=18% Similarity=0.436 Sum_probs=62.1
Q ss_pred hCCCcEEEEEECCCChhhHhhHHHHHHHHHhCCCeEEEEE--EC------------------------------------
Q psy5680 72 RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKI--NV------------------------------------ 113 (201)
Q Consensus 72 ~~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~~~~~~v--d~------------------------------------ 113 (201)
..++.+++.|+-+.||+|+++.+.+.++.+. ++.+..+ ..
T Consensus 105 ~~~k~~I~vFtDp~CpyCkkl~~~l~~~~~~--~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~ 182 (232)
T PRK10877 105 PQEKHVITVFTDITCGYCHKLHEQMKDYNAL--GITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPA 182 (232)
T ss_pred CCCCEEEEEEECCCChHHHHHHHHHHHHhcC--CeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCcc
Confidence 4467789999999999999999999887542 2332222 11
Q ss_pred ------CCCchhHHHHCCCCcccEEEEEeCCeEEEEEeCCCCHHHHHHHHHHH
Q psy5680 114 ------ENGGGEIAREFEVQAVPTVIGFRNGDPVDMVVGNADQDVIQTLVSKL 160 (201)
Q Consensus 114 ------~~~~~~l~~~~~v~~~Pti~~~~~G~~v~~~~G~~~~~~l~~~i~~~ 160 (201)
++ ..++++++||+++|+++ +.+|+.+ .|..+.++|.++|++.
T Consensus 183 ~c~~~v~~-~~~la~~lgi~gTPtiv-~~~G~~~---~G~~~~~~L~~~l~~~ 230 (232)
T PRK10877 183 SCDVDIAD-HYALGVQFGVQGTPAIV-LSNGTLV---PGYQGPKEMKAFLDEH 230 (232)
T ss_pred cccchHHH-hHHHHHHcCCccccEEE-EcCCeEe---eCCCCHHHHHHHHHHc
Confidence 11 26778999999999998 6678654 8989999999999864
No 161
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.40 E-value=3.3e-06 Score=74.73 Aligned_cols=96 Identities=15% Similarity=0.147 Sum_probs=77.4
Q ss_pred EEeCCHhHHHHHHhCC-CcEEEEEECCCChhhHhhHHHHHHHHHhCCCeEEEEEECCCCchhHHHHCCCCcccEEEEEeC
Q psy5680 59 LIIEKIDDFKQTIRGR-NPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTVIGFRN 137 (201)
Q Consensus 59 ~~l~~~~~~~~~~~~~-~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~l~~~~~v~~~Pti~~~~~ 137 (201)
..| +.+..+.+-.-+ ...+..|++++||+|......+++++...+++.+-.+|...+ ++++++|++.++|++++ +
T Consensus 101 ~~l-~~~~~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~~-~~~~~~~~v~~VP~~~i--~ 176 (517)
T PRK15317 101 PKL-DQEVIEQIKALDGDFHFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDGALF-QDEVEARNIMAVPTVFL--N 176 (517)
T ss_pred CCC-CHHHHHHHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEchhC-HhHHHhcCCcccCEEEE--C
Confidence 444 444444333333 445999999999999999999999999998899999999999 99999999999999976 5
Q ss_pred CeEEEEEeCCCCHHHHHHHHHHH
Q psy5680 138 GDPVDMVVGNADQDVIQTLVSKL 160 (201)
Q Consensus 138 G~~v~~~~G~~~~~~l~~~i~~~ 160 (201)
|+. .+.|..+.+++.+.+.+.
T Consensus 177 ~~~--~~~g~~~~~~~~~~~~~~ 197 (517)
T PRK15317 177 GEE--FGQGRMTLEEILAKLDTG 197 (517)
T ss_pred CcE--EEecCCCHHHHHHHHhcc
Confidence 654 467888888888888764
No 162
>PRK13191 putative peroxiredoxin; Provisional
Probab=98.38 E-value=3.7e-06 Score=66.11 Aligned_cols=89 Identities=13% Similarity=0.110 Sum_probs=66.5
Q ss_pred CCCcEEE-EEECCCChhhHhhHHHHHHHHHhCC--CeEEEEEECCCC--------------------------chhHHHH
Q psy5680 73 GRNPVLA-YFFKPSCGFCKQLEPKISTVSETTS--GVEFVKINVENG--------------------------GGEIARE 123 (201)
Q Consensus 73 ~~~~vvv-~f~a~wC~~C~~~~~~l~~l~~~~~--~~~~~~vd~~~~--------------------------~~~l~~~ 123 (201)
+++++++ .|+++||+.|....+.+.+++++|. ++.++.+++|.. +..+++.
T Consensus 32 ~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~~ 111 (215)
T PRK13191 32 KGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVAKR 111 (215)
T ss_pred CCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHHHH
Confidence 5666554 8899999999999999999999985 378888887744 1356677
Q ss_pred CCCC-------cccEEEEE-eCCeEEEEEeC----CCCHHHHHHHHHHHH
Q psy5680 124 FEVQ-------AVPTVIGF-RNGDPVDMVVG----NADQDVIQTLVSKLS 161 (201)
Q Consensus 124 ~~v~-------~~Pti~~~-~~G~~v~~~~G----~~~~~~l~~~i~~~~ 161 (201)
||+. ..|+.+++ ++|++...+.+ ..+.+++++.|+.+.
T Consensus 112 ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~alq 161 (215)
T PRK13191 112 LGMIHAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRALQ 161 (215)
T ss_pred cCCcccccCCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence 8863 36888888 68877665432 158899999887653
No 163
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=98.31 E-value=9.5e-06 Score=66.84 Aligned_cols=104 Identities=13% Similarity=0.311 Sum_probs=75.9
Q ss_pred EEEeCCHhHHHHHHhCCCcEEEEEECCCChhhHh-----hHHHHHHHHHh-CC--CeEEEEEECCCCchhHHHHCCCCcc
Q psy5680 58 YLIIEKIDDFKQTIRGRNPVLAYFFKPSCGFCKQ-----LEPKISTVSET-TS--GVEFVKINVENGGGEIAREFEVQAV 129 (201)
Q Consensus 58 v~~l~~~~~~~~~~~~~~~vvv~f~a~wC~~C~~-----~~~~l~~l~~~-~~--~~~~~~vd~~~~~~~l~~~~~v~~~ 129 (201)
+.+| +..+|.+++.+-...+|+|+.|--..-.. +...+-+|+.+ +. ++.|+.||..+. ..+++++|+...
T Consensus 36 Vi~L-neKNfk~~lKkyd~l~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd-~klAKKLgv~E~ 113 (383)
T PF01216_consen 36 VIDL-NEKNFKRALKKYDVLVLYYHEPVESDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKD-AKLAKKLGVEEE 113 (383)
T ss_dssp CEEE--TTTHHHHHHH-SEEEEEEE--STSSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTT-HHHHHHHT--ST
T ss_pred eEEc-chhHHHHHHHhhcEEEEEEecCCccCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHH-HHHHHhcCcccc
Confidence 8999 99999999988888999999886422211 22223334333 32 499999999999 999999999999
Q ss_pred cEEEEEeCCeEEEEEeCCCCHHHHHHHHHHHHhhh
Q psy5680 130 PTVIGFRNGDPVDMVVGNADQDVIQTLVSKLSQKL 164 (201)
Q Consensus 130 Pti~~~~~G~~v~~~~G~~~~~~l~~~i~~~~~~~ 164 (201)
+++.+|++|+++ .|.|..+++-|..||-..++..
T Consensus 114 ~SiyVfkd~~~I-EydG~~saDtLVeFl~dl~edP 147 (383)
T PF01216_consen 114 GSIYVFKDGEVI-EYDGERSADTLVEFLLDLLEDP 147 (383)
T ss_dssp TEEEEEETTEEE-EE-S--SHHHHHHHHHHHHSSS
T ss_pred CcEEEEECCcEE-EecCccCHHHHHHHHHHhcccc
Confidence 999999999887 6779999999999999998754
No 164
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=98.29 E-value=1.1e-05 Score=59.17 Aligned_cols=37 Identities=27% Similarity=0.687 Sum_probs=31.1
Q ss_pred CCCcEEEEEECCCChhhHhhHHHHHHHHHhCCCeEEE
Q psy5680 73 GRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFV 109 (201)
Q Consensus 73 ~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~~~~~ 109 (201)
..+++++.|+.++||+|+.+.+.+.++.+.++++.+.
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~~~~~~ 40 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDPDVRVV 40 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHCCCceEE
Confidence 4578899999999999999999999988888764443
No 165
>KOG3425|consensus
Probab=98.27 E-value=6.1e-06 Score=57.83 Aligned_cols=75 Identities=23% Similarity=0.478 Sum_probs=58.7
Q ss_pred CHhHHHHHH---hCCCcEEEEEEC--------CCChhhHhhHHHHHHHHHhCCC-eEEEEEECCCC------chhHHHHC
Q psy5680 63 KIDDFKQTI---RGRNPVLAYFFK--------PSCGFCKQLEPKISTVSETTSG-VEFVKINVENG------GGEIAREF 124 (201)
Q Consensus 63 ~~~~~~~~~---~~~~~vvv~f~a--------~wC~~C~~~~~~l~~l~~~~~~-~~~~~vd~~~~------~~~l~~~~ 124 (201)
-.++|++.+ .+++.++|.|++ +|||.|.+..|.+.+.-+..+. +.|+.+++.+- +..+....
T Consensus 11 g~e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d~ 90 (128)
T KOG3425|consen 11 GYESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKDP 90 (128)
T ss_pred hHHHHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccCC
Confidence 356777777 567779999985 6999999999999888887776 99999998644 13455566
Q ss_pred CC-CcccEEEEEeC
Q psy5680 125 EV-QAVPTVIGFRN 137 (201)
Q Consensus 125 ~v-~~~Pti~~~~~ 137 (201)
++ .++||++-+.+
T Consensus 91 ~~lt~vPTLlrw~~ 104 (128)
T KOG3425|consen 91 GILTAVPTLLRWKR 104 (128)
T ss_pred CceeecceeeEEcC
Confidence 66 89999999864
No 166
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=98.24 E-value=9e-06 Score=50.53 Aligned_cols=55 Identities=24% Similarity=0.529 Sum_probs=43.2
Q ss_pred EEEEECCCChhhHhhHHHHHHHHHhCCCeEEEEEECCCCchhHH----HHCCCCcccEEEEEeCCeE
Q psy5680 78 LAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIA----REFEVQAVPTVIGFRNGDP 140 (201)
Q Consensus 78 vv~f~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~l~----~~~~v~~~Pti~~~~~G~~ 140 (201)
++.|+.+||++|.+....|++. ++.+-.+|++.. ++.. +..+...+|++++ +|+.
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~-----~i~y~~~dv~~~-~~~~~~l~~~~g~~~~P~v~i--~g~~ 59 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEK-----GIPYEEVDVDED-EEAREELKELSGVRTVPQVFI--DGKF 59 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT-----TBEEEEEEGGGS-HHHHHHHHHHHSSSSSSEEEE--TTEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHc-----CCeeeEcccccc-hhHHHHHHHHcCCCccCEEEE--CCEE
Confidence 5789999999999999888553 578888888877 4433 3349999999987 6654
No 167
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.20 E-value=1.9e-05 Score=69.93 Aligned_cols=96 Identities=13% Similarity=0.180 Sum_probs=77.3
Q ss_pred EEeCCHhHHHHHHh-CCCcEEEEEECCCChhhHhhHHHHHHHHHhCCCeEEEEEECCCCchhHHHHCCCCcccEEEEEeC
Q psy5680 59 LIIEKIDDFKQTIR-GRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTVIGFRN 137 (201)
Q Consensus 59 ~~l~~~~~~~~~~~-~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~l~~~~~v~~~Pti~~~~~ 137 (201)
..| +.+..+.+-. .+...+-.|+++.||+|......+++++...+++..-.+|.... +++.++|++.++|++++ +
T Consensus 102 ~~l-~~~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~~-~~~~~~~~v~~VP~~~i--~ 177 (515)
T TIGR03140 102 PKL-DEGIIDRIRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLNPNISHTMIDGALF-QDEVEALGIQGVPAVFL--N 177 (515)
T ss_pred CCC-CHHHHHHHHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEchhC-HHHHHhcCCcccCEEEE--C
Confidence 444 4444444433 34446999999999999999999999999999988888999999 99999999999999987 5
Q ss_pred CeEEEEEeCCCCHHHHHHHHHHH
Q psy5680 138 GDPVDMVVGNADQDVIQTLVSKL 160 (201)
Q Consensus 138 G~~v~~~~G~~~~~~l~~~i~~~ 160 (201)
|+. .+.|..+.+++.+.+.+.
T Consensus 178 ~~~--~~~g~~~~~~~~~~l~~~ 198 (515)
T TIGR03140 178 GEE--FHNGRMDLAELLEKLEET 198 (515)
T ss_pred CcE--EEecCCCHHHHHHHHhhc
Confidence 654 467888888887777665
No 168
>KOG3170|consensus
Probab=98.19 E-value=7.7e-06 Score=62.38 Aligned_cols=100 Identities=14% Similarity=0.281 Sum_probs=79.4
Q ss_pred ceEEEeCCHhHHHHHH---hCCCcEEEEEECCCChhhHhhHHHHHHHHHhCCCeEEEEEECCCCchhHHHHCCCCcccEE
Q psy5680 56 MAYLIIEKIDDFKQTI---RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTV 132 (201)
Q Consensus 56 ~~v~~l~~~~~~~~~~---~~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~l~~~~~v~~~Pti 132 (201)
..|.+| +..+|.+-+ .++-.|+|..|..+-+.|..+...+++++.+||.+.|+++-.+.. ..-|--...||+
T Consensus 91 G~V~~I-Sg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~iKFVki~at~c----IpNYPe~nlPTl 165 (240)
T KOG3170|consen 91 GEVFPI-SGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQIKFVKIPATTC----IPNYPESNLPTL 165 (240)
T ss_pred cceeec-cchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCCcceEEecccccc----cCCCcccCCCeE
Confidence 349999 888888877 667789999999999999999999999999999999988875544 334556789999
Q ss_pred EEEeCCeEEEEEeC------C-CCHHHHHHHHHHH
Q psy5680 133 IGFRNGDPVDMVVG------N-ADQDVIQTLVSKL 160 (201)
Q Consensus 133 ~~~~~G~~v~~~~G------~-~~~~~l~~~i~~~ 160 (201)
++|..|.....+.| . .+.+++..++-+.
T Consensus 166 ~VY~~G~lk~q~igll~lgG~n~t~ed~e~~L~qa 200 (240)
T KOG3170|consen 166 LVYHHGALKKQMIGLLELGGMNLTMEDVEDFLVQA 200 (240)
T ss_pred EEeecchHHhheehhhhhcCCcCCHHHHHHHHHhc
Confidence 99998876555444 2 4667777776654
No 169
>KOG3171|consensus
Probab=98.18 E-value=6.1e-06 Score=63.55 Aligned_cols=102 Identities=16% Similarity=0.318 Sum_probs=83.6
Q ss_pred eEEEeCCHhHHHHHHh---CCCcEEEEEECCCChhhHhhHHHHHHHHHhCCCeEEEEEECCCCchhHHHHCCCCcccEEE
Q psy5680 57 AYLIIEKIDDFKQTIR---GRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTVI 133 (201)
Q Consensus 57 ~v~~l~~~~~~~~~~~---~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~l~~~~~v~~~Pti~ 133 (201)
-|.++++.++|.+.++ +.-.++|+.|-+.-..|..+...+.-|+.+||-+.|+++-...- ....+|....+|+++
T Consensus 139 ~V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP~vKFckikss~~--gas~~F~~n~lP~Ll 216 (273)
T KOG3171|consen 139 FVYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYPIVKFCKIKSSNT--GASDRFSLNVLPTLL 216 (273)
T ss_pred eEEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccCCceeEEEeeeccc--cchhhhcccCCceEE
Confidence 3899999999999993 34568899999999999999999999999999999999986544 678899999999999
Q ss_pred EEeCCeEEEEEeC-------CCCHHHHHHHHHHH
Q psy5680 134 GFRNGDPVDMVVG-------NADQDVIQTLVSKL 160 (201)
Q Consensus 134 ~~~~G~~v~~~~G-------~~~~~~l~~~i~~~ 160 (201)
+|++|+.+..|.. ...+.++..||++.
T Consensus 217 iYkgGeLIgNFv~va~qlgedffa~dle~FL~e~ 250 (273)
T KOG3171|consen 217 IYKGGELIGNFVSVAEQLGEDFFAGDLESFLNEY 250 (273)
T ss_pred EeeCCchhHHHHHHHHHHhhhhhhhhHHHHHHHc
Confidence 9999998754332 23445666666654
No 170
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=98.18 E-value=1.1e-05 Score=62.38 Aligned_cols=78 Identities=22% Similarity=0.532 Sum_probs=56.6
Q ss_pred CCCcEEEEEECCCChhhHhhHHHHHHHHHhCCC--eEEEEEECCC--C--------------------------------
Q psy5680 73 GRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG--VEFVKINVEN--G-------------------------------- 116 (201)
Q Consensus 73 ~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~--~~~~~vd~~~--~-------------------------------- 116 (201)
.++..++.|+.+.|++|+++.+.+.+ ...+ +.+..+.... .
T Consensus 76 ~~~~~i~~f~D~~Cp~C~~~~~~l~~---~~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~~~ 152 (197)
T cd03020 76 NGKRVVYVFTDPDCPYCRKLEKELKP---NADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPPAA 152 (197)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHhh---ccCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCCcc
Confidence 45789999999999999999998876 2223 2222222221 1
Q ss_pred --------chhHHHHCCCCcccEEEEEeCCeEEEEEeCCCCHHHHHHHH
Q psy5680 117 --------GGEIAREFEVQAVPTVIGFRNGDPVDMVVGNADQDVIQTLV 157 (201)
Q Consensus 117 --------~~~l~~~~~v~~~Pti~~~~~G~~v~~~~G~~~~~~l~~~i 157 (201)
+..+++++||.++|+++ +.+|+. +.|..+.++|.++|
T Consensus 153 ~~~~~i~~~~~l~~~~gi~gtPtii-~~~G~~---~~G~~~~~~l~~~L 197 (197)
T cd03020 153 SCDNPVAANLALGRQLGVNGTPTIV-LADGRV---VPGAPPAAQLEALL 197 (197)
T ss_pred ccCchHHHHHHHHHHcCCCcccEEE-ECCCeE---ecCCCCHHHHHhhC
Confidence 15677899999999997 777865 47888888887764
No 171
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=98.18 E-value=1.2e-05 Score=62.40 Aligned_cols=89 Identities=15% Similarity=0.195 Sum_probs=66.2
Q ss_pred CCCcEEEEEEC-CCChhhHhhHHHHHHHHHhCCC--eEEEEEECCCC---------------------------chhHHH
Q psy5680 73 GRNPVLAYFFK-PSCGFCKQLEPKISTVSETTSG--VEFVKINVENG---------------------------GGEIAR 122 (201)
Q Consensus 73 ~~~~vvv~f~a-~wC~~C~~~~~~l~~l~~~~~~--~~~~~vd~~~~---------------------------~~~l~~ 122 (201)
++++++|+||+ +||+.|......+.++++++.+ +.++.|++|.. +.++++
T Consensus 35 ~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ia~ 114 (199)
T PTZ00253 35 KGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSIAR 114 (199)
T ss_pred CCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhHHHH
Confidence 57889999995 7899999999999999999874 88888887743 135678
Q ss_pred HCCCC------cccEEEEE-eCCeEEEEEeCC----CCHHHHHHHHHHHH
Q psy5680 123 EFEVQ------AVPTVIGF-RNGDPVDMVVGN----ADQDVIQTLVSKLS 161 (201)
Q Consensus 123 ~~~v~------~~Pti~~~-~~G~~v~~~~G~----~~~~~l~~~i~~~~ 161 (201)
.|++. .+|+.+++ ++|++.....+. .+.+++++.|....
T Consensus 115 ~ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~~~r~~~e~l~~l~a~~ 164 (199)
T PTZ00253 115 SYGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMPVGRNVEEVLRLLEAFQ 164 (199)
T ss_pred HcCCcccCCCceEEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHhhh
Confidence 88885 46888888 577776654432 46677777776543
No 172
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=98.15 E-value=3.2e-05 Score=52.65 Aligned_cols=93 Identities=14% Similarity=0.215 Sum_probs=72.1
Q ss_pred EEeCCHhHHHHHHhCCCcEEEEEECCCChhhHhhHHHHHHHHHhCCC-eEEEEEECCCCchhHHHHCCCCcccEEEEEeC
Q psy5680 59 LIIEKIDDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENGGGEIAREFEVQAVPTVIGFRN 137 (201)
Q Consensus 59 ~~l~~~~~~~~~~~~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~-~~~~~vd~~~~~~~l~~~~~v~~~Pti~~~~~ 137 (201)
.+|++.++++..+..+.+++|-|+.++|+ .....+.++|+.+.+ +.|+.+. + +++.+++++. -|++++|++
T Consensus 2 ~~i~s~~~l~~~~~~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~~~~F~~~~---~-~~~~~~~~~~-~~~i~l~~~ 73 (97)
T cd02981 2 KELTSKEELEKFLDKDDVVVVGFFKDEES---EEYKTFEKVAESLRDDYGFGHTS---D-KEVAKKLKVK-PGSVVLFKP 73 (97)
T ss_pred eecCCHHHHHHHhccCCeEEEEEECCCCc---HHHHHHHHHHHhcccCCeEEEEC---h-HHHHHHcCCC-CCceEEeCC
Confidence 45657777888778899999999999987 456788889999975 8887766 4 5778788775 489999965
Q ss_pred C-eEEEEEeCCCCHHHHHHHHHH
Q psy5680 138 G-DPVDMVVGNADQDVIQTLVSK 159 (201)
Q Consensus 138 G-~~v~~~~G~~~~~~l~~~i~~ 159 (201)
. .....|.|..+.+.|.+||..
T Consensus 74 ~~~~~~~y~g~~~~~~l~~fi~~ 96 (97)
T cd02981 74 FEEEPVEYDGEFTEESLVEFIKD 96 (97)
T ss_pred cccCCccCCCCCCHHHHHHHHHh
Confidence 4 344468888889999999864
No 173
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=98.13 E-value=3.5e-05 Score=51.05 Aligned_cols=78 Identities=13% Similarity=0.321 Sum_probs=60.9
Q ss_pred EEEEECCCChhhHhhHHHHHHHHHhCCCeEEEEEECCCCchhHHHHCCCCcccEEEEEeCC--eEEEEEeCCCCHHHHHH
Q psy5680 78 LAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTVIGFRNG--DPVDMVVGNADQDVIQT 155 (201)
Q Consensus 78 vv~f~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~l~~~~~v~~~Pti~~~~~G--~~v~~~~G~~~~~~l~~ 155 (201)
+++|+.+.|+-|..+...+.++....+ +.+-.+|++++ +++..+|+. .+|.+.+-..+ .......+..+.+.+.+
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~~-~~l~~vDI~~d-~~l~~~Y~~-~IPVl~~~~~~~~~~~~~~~~~~d~~~L~~ 78 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEFP-FELEEVDIDED-PELFEKYGY-RIPVLHIDGIRQFKEQEELKWRFDEEQLRA 78 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTST-CEEEEEETTTT-HHHHHHSCT-STSEEEETT-GGGCTSEEEESSB-HHHHHH
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhcC-ceEEEEECCCC-HHHHHHhcC-CCCEEEEcCcccccccceeCCCCCHHHHHH
Confidence 789999999999999999988765554 89999999999 999999995 79997773210 11346678899999999
Q ss_pred HHH
Q psy5680 156 LVS 158 (201)
Q Consensus 156 ~i~ 158 (201)
+|+
T Consensus 79 ~L~ 81 (81)
T PF05768_consen 79 WLE 81 (81)
T ss_dssp HHH
T ss_pred HhC
Confidence 885
No 174
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=98.08 E-value=3.3e-05 Score=49.88 Aligned_cols=67 Identities=22% Similarity=0.458 Sum_probs=49.2
Q ss_pred EEEEECCCChhhHhhHHHHHHHHHhCCCeEEEEEECCCCchhHHHHC---CCCcccEEEEEeCCeEEEEEeCCCCHHHHH
Q psy5680 78 LAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREF---EVQAVPTVIGFRNGDPVDMVVGNADQDVIQ 154 (201)
Q Consensus 78 vv~f~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~l~~~~---~v~~~Pti~~~~~G~~v~~~~G~~~~~~l~ 154 (201)
+..|+.++|++|+.....|++ .++.+-.+|++++ ++..+.+ |...+|++++ +|+. .+.| .+.+.|.
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~-----~~i~~~~~di~~~-~~~~~~~~~~g~~~vP~v~~--~g~~--~~~G-~~~~~~~ 69 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEE-----HGIAFEEINIDEQ-PEAIDYVKAQGFRQVPVIVA--DGDL--SWSG-FRPDKLK 69 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHH-----CCCceEEEECCCC-HHHHHHHHHcCCcccCEEEE--CCCc--EEec-cCHHHHH
Confidence 467899999999999988876 2577888899887 6555544 7889999765 4432 3455 7777765
Q ss_pred H
Q psy5680 155 T 155 (201)
Q Consensus 155 ~ 155 (201)
+
T Consensus 70 ~ 70 (72)
T TIGR02194 70 A 70 (72)
T ss_pred h
Confidence 5
No 175
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=98.07 E-value=1.9e-05 Score=51.93 Aligned_cols=59 Identities=19% Similarity=0.393 Sum_probs=43.3
Q ss_pred EEEEECCCChhhHhhHHHHHHHHHhCCCeEEEEEECCCCc----hhHHHHCCCCcccEEEEEeCCeEE
Q psy5680 78 LAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGG----GEIAREFEVQAVPTVIGFRNGDPV 141 (201)
Q Consensus 78 vv~f~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~----~~l~~~~~v~~~Pti~~~~~G~~v 141 (201)
++.|+++|||+|+.+...++++... +.++.++.+... ..+.+..+...+|+++ -+|+.+
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~--~~g~~i 64 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGVK---PAVVELDQHEDGSEIQDYLQELTGQRTVPNVF--IGGKFI 64 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCCC---cEEEEEeCCCChHHHHHHHHHHhCCCCCCeEE--ECCEEE
Confidence 5889999999999999999887542 567777776541 1345667888999974 366553
No 176
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=98.06 E-value=5.2e-05 Score=49.92 Aligned_cols=62 Identities=24% Similarity=0.495 Sum_probs=44.9
Q ss_pred CCCcEEEEEECCCChhhHhhHHHHHHHHHhCCCeEEEEEECCCC--chhHHHHCCCCcccEEEEEeCCeEE
Q psy5680 73 GRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENG--GGEIAREFEVQAVPTVIGFRNGDPV 141 (201)
Q Consensus 73 ~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~--~~~l~~~~~v~~~Pti~~~~~G~~v 141 (201)
.++.-++.|+.+||++|++....|++. ++.+-.+|+++. ..++.+..+...+|.+++ +|+.+
T Consensus 5 ~~~~~V~ly~~~~Cp~C~~ak~~L~~~-----gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~i--~g~~i 68 (79)
T TIGR02190 5 RKPESVVVFTKPGCPFCAKAKATLKEK-----GYDFEEIPLGNDARGRSLRAVTGATTVPQVFI--GGKLI 68 (79)
T ss_pred CCCCCEEEEECCCCHhHHHHHHHHHHc-----CCCcEEEECCCChHHHHHHHHHCCCCcCeEEE--CCEEE
Confidence 345568899999999999999888753 456666777655 134445568899999965 67553
No 177
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=98.04 E-value=8.9e-05 Score=55.01 Aligned_cols=82 Identities=24% Similarity=0.436 Sum_probs=64.0
Q ss_pred CCCcEEEEEECCCChhhHhhHHHHHHHHHhC--CC-eEEEEEECCCC---------------------------------
Q psy5680 73 GRNPVLAYFFKPSCGFCKQLEPKISTVSETT--SG-VEFVKINVENG--------------------------------- 116 (201)
Q Consensus 73 ~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~--~~-~~~~~vd~~~~--------------------------------- 116 (201)
..+++|+.|+...||+|.++.+.+.++.+++ ++ +.+...++-..
T Consensus 11 ~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (162)
T PF13462_consen 11 DAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPLDKHSSLRAAMAAECVADQGKYFWFFHELLFSQQE 90 (162)
T ss_dssp TTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHCH
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEccccchhHHHHHHHHHHHHHHhHHHHHHHHHHHHhhh
Confidence 4577899999999999999999999998888 55 77777766322
Q ss_pred ----------------------------------chhHHHHCCCCcccEEEEEeCCeEEEEEeCCCCHHHHHHHHHH
Q psy5680 117 ----------------------------------GGEIAREFEVQAVPTVIGFRNGDPVDMVVGNADQDVIQTLVSK 159 (201)
Q Consensus 117 ----------------------------------~~~l~~~~~v~~~Pti~~~~~G~~v~~~~G~~~~~~l~~~i~~ 159 (201)
....+++++|.++||+++ +|+.+ .|..+.+++.++|++
T Consensus 91 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~tPt~~i--nG~~~---~~~~~~~~l~~~Id~ 162 (162)
T PF13462_consen 91 NFENKKDIAANAGGSNEQFNKCLNSDEIKAQLEADSQLARQLGITGTPTFFI--NGKYV---VGPYTIEELKELIDK 162 (162)
T ss_dssp STSSHHHHHHHTTSHHHHHHHHHTSHHHHHHHHHHHHHHHHHT-SSSSEEEE--TTCEE---ETTTSHHHHHHHHHH
T ss_pred ccchhHHHHHHcCCCHHHHHHHhhchHHHHHHHHHHHHHHHcCCccccEEEE--CCEEe---CCCCCHHHHHHHHcC
Confidence 023346779999999999 88774 788999999999875
No 178
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=98.03 E-value=6.3e-05 Score=52.96 Aligned_cols=100 Identities=11% Similarity=0.066 Sum_probs=77.6
Q ss_pred EEeCCHhHHHHHHhCCCcEEEEEECCCChhhHhhHHHHHHHHHh---CCC-eEEEEEECCCCchhHHHHCCCCc--ccEE
Q psy5680 59 LIIEKIDDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSET---TSG-VEFVKINVENGGGEIAREFEVQA--VPTV 132 (201)
Q Consensus 59 ~~l~~~~~~~~~~~~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~---~~~-~~~~~vd~~~~~~~l~~~~~v~~--~Pti 132 (201)
+++ +.+++..+...+.+..+.|+.+ ..-..+...+.+++++ +++ +.|+.+|.+.. ....+.||+.. +|.+
T Consensus 2 ~e~-t~e~~~~~~~~~~~~~~l~f~~--~~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~-~~~~~~fgl~~~~~P~i 77 (111)
T cd03072 2 REI-TFENAEELTEEGLPFLILFHDK--DDLESLKEFKQAVARQLISEKGAINFLTADGDKF-RHPLLHLGKTPADLPVI 77 (111)
T ss_pred ccc-ccccHHHHhcCCCCeEEEEecc--hHHHHHHHHHHHHHHHHHhcCceEEEEEEechHh-hhHHHHcCCCHhHCCEE
Confidence 456 7788887777777777777722 2235678889999999 998 99999999998 66899999997 8999
Q ss_pred EEEeCCe-EEEE-EeCCCCHHHHHHHHHHHHh
Q psy5680 133 IGFRNGD-PVDM-VVGNADQDVIQTLVSKLSQ 162 (201)
Q Consensus 133 ~~~~~G~-~v~~-~~G~~~~~~l~~~i~~~~~ 162 (201)
.+..... .... ..+..+.+.|.+|+++.+.
T Consensus 78 ~i~~~~~~~Ky~~~~~~~t~~~i~~Fv~~~~~ 109 (111)
T cd03072 78 AIDSFRHMYLFPDFEDVYVPGKLKQFVLDLHS 109 (111)
T ss_pred EEEcchhcCcCCCCccccCHHHHHHHHHHHhc
Confidence 9985432 2223 5677899999999998764
No 179
>KOG2603|consensus
Probab=98.03 E-value=4.1e-05 Score=62.23 Aligned_cols=104 Identities=16% Similarity=0.372 Sum_probs=83.3
Q ss_pred EEEeCCHhHHHHHH---hCCCcEEEEEECC----CChhhHhhHHHHHHHHHhCC-------C--eEEEEEECCCCchhHH
Q psy5680 58 YLIIEKIDDFKQTI---RGRNPVLAYFFKP----SCGFCKQLEPKISTVSETTS-------G--VEFVKINVENGGGEIA 121 (201)
Q Consensus 58 v~~l~~~~~~~~~~---~~~~~vvv~f~a~----wC~~C~~~~~~l~~l~~~~~-------~--~~~~~vd~~~~~~~l~ 121 (201)
+..+ +++.|...+ .++-.++|+|.|. .|+-|+.+..++.-++..+. + +-|..||.++. ++..
T Consensus 42 VI~~-n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~-p~~F 119 (331)
T KOG2603|consen 42 VIRM-NDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDES-PQVF 119 (331)
T ss_pred eEEe-cCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEecccc-HHHH
Confidence 9999 999999998 4556688999976 49999999999999988753 1 67999999999 9999
Q ss_pred HHCCCCcccEEEEEe--CCeEE------EEEeCCCCHHHHHHHHHHHHhhh
Q psy5680 122 REFEVQAVPTVIGFR--NGDPV------DMVVGNADQDVIQTLVSKLSQKL 164 (201)
Q Consensus 122 ~~~~v~~~Pti~~~~--~G~~v------~~~~G~~~~~~l~~~i~~~~~~~ 164 (201)
++++++++|++++|. .|+.. ....| ..+|++.+|+++..+-.
T Consensus 120 q~l~ln~~P~l~~f~P~~~n~~~s~~~d~~~~g-~~Ae~iaqfv~~~tkv~ 169 (331)
T KOG2603|consen 120 QQLNLNNVPHLVLFSPAKGNKKRSDQMDQQDLG-FEAEQIAQFVADRTKVN 169 (331)
T ss_pred HHhcccCCCeEEEeCCCccccccCccchhhhcc-hhHHHHHHHHHHhhhhe
Confidence 999999999999992 33221 12334 34899999998875544
No 180
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=98.02 E-value=0.00019 Score=51.99 Aligned_cols=106 Identities=13% Similarity=0.228 Sum_probs=79.3
Q ss_pred EEEeCCHhHHHHHHhCCCcEEEEEECC--CC-hhh-HhhHHHHHHHHHhCCC--eEEEEEECCCCchhHHHHCCCC--cc
Q psy5680 58 YLIIEKIDDFKQTIRGRNPVLAYFFKP--SC-GFC-KQLEPKISTVSETTSG--VEFVKINVENGGGEIAREFEVQ--AV 129 (201)
Q Consensus 58 v~~l~~~~~~~~~~~~~~~vvv~f~a~--wC-~~C-~~~~~~l~~l~~~~~~--~~~~~vd~~~~~~~l~~~~~v~--~~ 129 (201)
+.+|++.+.+++.-.+++..+|.|.-. .| ..+ ..+...+.+++++|++ +.|+.+|.+.. ..+.+.||+. .+
T Consensus 4 ~~~l~~~~~~~~~C~~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~-~~~~~~fgl~~~~~ 82 (130)
T cd02983 4 IIELTSEDVFEETCEEKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQ-LDLEEALNIGGFGY 82 (130)
T ss_pred eEEecCHHHHHhhccCCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCccc-HHHHHHcCCCccCC
Confidence 788945555555545566777777532 23 223 4567789999999987 89999999999 8899999995 49
Q ss_pred cEEEEEeCCeEEEE-EeCCCCHHHHHHHHHHHHhhh
Q psy5680 130 PTVIGFRNGDPVDM-VVGNADQDVIQTLVSKLSQKL 164 (201)
Q Consensus 130 Pti~~~~~G~~v~~-~~G~~~~~~l~~~i~~~~~~~ 164 (201)
|+++++...+.... +.|..+.+.+.+|+++.+...
T Consensus 83 P~v~i~~~~~~KY~~~~~~~t~e~i~~Fv~~~l~Gk 118 (130)
T cd02983 83 PAMVAINFRKMKFATLKGSFSEDGINEFLRELSYGR 118 (130)
T ss_pred CEEEEEecccCccccccCccCHHHHHHHHHHHHcCC
Confidence 99999954332333 778899999999999988654
No 181
>PRK10329 glutaredoxin-like protein; Provisional
Probab=98.02 E-value=0.00015 Score=48.02 Aligned_cols=72 Identities=24% Similarity=0.377 Sum_probs=55.1
Q ss_pred EEEEECCCChhhHhhHHHHHHHHHhCCCeEEEEEECCCCchhHH---HHCCCCcccEEEEEeCCeEEEEEeCCCCHHHHH
Q psy5680 78 LAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIA---REFEVQAVPTVIGFRNGDPVDMVVGNADQDVIQ 154 (201)
Q Consensus 78 vv~f~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~l~---~~~~v~~~Pti~~~~~G~~v~~~~G~~~~~~l~ 154 (201)
+..|+.+||++|......|.+ .++.|-.+|++.. ++.. ...+...+|++++ ++. ...| .+.+.|.
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~-----~gI~~~~idi~~~-~~~~~~~~~~g~~~vPvv~i--~~~---~~~G-f~~~~l~ 70 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES-----RGFDFEMINVDRV-PEAAETLRAQGFRQLPVVIA--GDL---SWSG-FRPDMIN 70 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH-----CCCceEEEECCCC-HHHHHHHHHcCCCCcCEEEE--CCE---EEec-CCHHHHH
Confidence 678999999999999988865 3688888999887 6533 3457789999965 442 3457 8889999
Q ss_pred HHHHHHH
Q psy5680 155 TLVSKLS 161 (201)
Q Consensus 155 ~~i~~~~ 161 (201)
+++....
T Consensus 71 ~~~~~~~ 77 (81)
T PRK10329 71 RLHPAPH 77 (81)
T ss_pred HHHHhhh
Confidence 8887654
No 182
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=98.01 E-value=8.1e-05 Score=56.16 Aligned_cols=36 Identities=25% Similarity=0.533 Sum_probs=31.9
Q ss_pred CCCcEEEEEECCCChhhHhhHHHHHHHHHhCCC-eEE
Q psy5680 73 GRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEF 108 (201)
Q Consensus 73 ~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~-~~~ 108 (201)
..++.++.|+...||+|+.+.+.+.++.+++++ +.+
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~v~~ 50 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKDVKF 50 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCCceE
Confidence 578899999999999999999999999998876 444
No 183
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=97.98 E-value=8.7e-05 Score=59.74 Aligned_cols=85 Identities=18% Similarity=0.373 Sum_probs=60.7
Q ss_pred CCCcEEEEEECCCChhhHhhHHHHHHHHHhCCCeEEEEEEC---CCC---------------------------------
Q psy5680 73 GRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINV---ENG--------------------------------- 116 (201)
Q Consensus 73 ~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vd~---~~~--------------------------------- 116 (201)
..+.+++.|+-+.||+|+++.+.+.++.+. +++.+..+-. ...
T Consensus 116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~-g~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~~~~ 194 (251)
T PRK11657 116 DAPRIVYVFADPNCPYCKQFWQQARPWVDS-GKVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGLKPP 194 (251)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHhhc-CceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCCCcc
Confidence 456789999999999999999998887654 2333322221 000
Q ss_pred -------------chhHHHHCCCCcccEEEEEeCCeEEEEEeCCCCHHHHHHHHH
Q psy5680 117 -------------GGEIAREFEVQAVPTVIGFRNGDPVDMVVGNADQDVIQTLVS 158 (201)
Q Consensus 117 -------------~~~l~~~~~v~~~Pti~~~~~G~~v~~~~G~~~~~~l~~~i~ 158 (201)
+..+.+++|++++|++++-.+...+....|..+.++|.+++.
T Consensus 195 ~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G~~~~v~G~~~~~~L~~~l~ 249 (251)
T PRK11657 195 ASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDGTLQQVVGLPDPAQLAEIMG 249 (251)
T ss_pred ccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCEEEecCCCCHHHHHHHhC
Confidence 124667899999999999853235557889889999988874
No 184
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=97.97 E-value=0.00011 Score=47.37 Aligned_cols=66 Identities=21% Similarity=0.489 Sum_probs=47.0
Q ss_pred EEEEECCCChhhHhhHHHHHHHHHhCCCeEEEEEECCCCchh---HHHHCCCCcccEEEEEeCCeEEEEEeCCCCHHHHH
Q psy5680 78 LAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGE---IAREFEVQAVPTVIGFRNGDPVDMVVGNADQDVIQ 154 (201)
Q Consensus 78 vv~f~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~---l~~~~~v~~~Pti~~~~~G~~v~~~~G~~~~~~l~ 154 (201)
++.|..+||+.|.+....|++. ++.+..+|++.+ .. +....+...+|.+++ +|+.+ | ..+++.
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~-----~i~~~~~~v~~~-~~~~~~~~~~g~~~vP~ifi--~g~~i----g--g~~~l~ 68 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQEN-----GISYEEIPLGKD-ITGRSLRAVTGAMTVPQVFI--DGELI----G--GSDDLE 68 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-----CCCcEEEECCCC-hhHHHHHHHhCCCCcCeEEE--CCEEE----e--CHHHHH
Confidence 6889999999999998888753 566777787766 32 334458889999844 67554 2 356666
Q ss_pred HHH
Q psy5680 155 TLV 157 (201)
Q Consensus 155 ~~i 157 (201)
+++
T Consensus 69 ~~l 71 (72)
T cd03029 69 KYF 71 (72)
T ss_pred HHh
Confidence 664
No 185
>PHA03050 glutaredoxin; Provisional
Probab=97.93 E-value=7.5e-05 Score=52.30 Aligned_cols=69 Identities=13% Similarity=0.262 Sum_probs=45.7
Q ss_pred HHHHHhCCCcEEEEEECCCChhhHhhHHHHHHHHHhCCCeEEEEEECCCC--ch----hHHHHCCCCcccEEEEEeCCeE
Q psy5680 67 FKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENG--GG----EIAREFEVQAVPTVIGFRNGDP 140 (201)
Q Consensus 67 ~~~~~~~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~--~~----~l~~~~~v~~~Pti~~~~~G~~ 140 (201)
.++.+.++ -++.|..+|||+|.+....|++..-.++ .+-.+|+++. +. .+.+.-|...+|++++ +|+.
T Consensus 6 v~~~i~~~--~V~vys~~~CPyC~~ak~~L~~~~i~~~--~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI--~g~~ 79 (108)
T PHA03050 6 VQQRLANN--KVTIFVKFTCPFCRNALDILNKFSFKRG--AYEIVDIKEFKPENELRDYFEQITGGRTVPRIFF--GKTS 79 (108)
T ss_pred HHHHhccC--CEEEEECCCChHHHHHHHHHHHcCCCcC--CcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEE--CCEE
Confidence 34444333 3889999999999999988887644333 3445555542 12 3555668889999955 6765
Q ss_pred E
Q psy5680 141 V 141 (201)
Q Consensus 141 v 141 (201)
+
T Consensus 80 i 80 (108)
T PHA03050 80 I 80 (108)
T ss_pred E
Confidence 4
No 186
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=97.89 E-value=7.7e-05 Score=47.20 Aligned_cols=57 Identities=25% Similarity=0.545 Sum_probs=42.4
Q ss_pred EEEEECCCChhhHhhHHHHHHHHHhCCCeEEEEEECCCCchhH----HHHCCCCcccEEEEEeCCeEEE
Q psy5680 78 LAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEI----AREFEVQAVPTVIGFRNGDPVD 142 (201)
Q Consensus 78 vv~f~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~l----~~~~~v~~~Pti~~~~~G~~v~ 142 (201)
++.|+++||++|+.+...+.+.. +.+..+|++.+ ++. .+..+...+|++++ +|+.+.
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~-----i~~~~~di~~~-~~~~~~l~~~~~~~~~P~~~~--~~~~ig 62 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG-----IEFEEIDILED-GELREELKELSGWPTVPQIFI--NGEFIG 62 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC-----CcEEEEECCCC-HHHHHHHHHHhCCCCcCEEEE--CCEEEe
Confidence 57899999999999998888753 67778888877 543 33456778887744 676543
No 187
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=97.87 E-value=0.00012 Score=47.23 Aligned_cols=56 Identities=18% Similarity=0.469 Sum_probs=41.6
Q ss_pred EEEEECCCChhhHhhHHHHHHHHHhCCCeEEEEEECCCCchhHHH----HCCCC-cccEEEEEeCCeEE
Q psy5680 78 LAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAR----EFEVQ-AVPTVIGFRNGDPV 141 (201)
Q Consensus 78 vv~f~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~l~~----~~~v~-~~Pti~~~~~G~~v 141 (201)
++.|+.+||++|......|++. ++.+-.+|++.+ ++..+ ..+.. .+|++++ +|+.+
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~-----~i~~~~i~i~~~-~~~~~~~~~~~~~~~~vP~v~i--~g~~i 62 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK-----GVDYEEIDVDGD-PALREEMINRSGGRRTVPQIFI--GDVHI 62 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC-----CCcEEEEECCCC-HHHHHHHHHHhCCCCccCEEEE--CCEEE
Confidence 5789999999999999888763 567778888876 55443 45666 8998754 67554
No 188
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=97.84 E-value=6.6e-05 Score=49.22 Aligned_cols=56 Identities=23% Similarity=0.495 Sum_probs=41.0
Q ss_pred EEEEECCCChhhHhhHHHHHHHHHhCCCeEEEEEECCCCchhHH----HHCCCCcccEEEEEeCCeEE
Q psy5680 78 LAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIA----REFEVQAVPTVIGFRNGDPV 141 (201)
Q Consensus 78 vv~f~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~l~----~~~~v~~~Pti~~~~~G~~v 141 (201)
++.|+.+||++|......|++. ++.+-.+|++.. ++.. +..+...+|++++ +|+.+
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~-----~i~~~~~di~~~-~~~~~~~~~~~g~~~vP~i~i--~g~~i 60 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSK-----GVTFTEIRVDGD-PALRDEMMQRSGRRTVPQIFI--GDVHV 60 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHc-----CCCcEEEEecCC-HHHHHHHHHHhCCCCcCEEEE--CCEEE
Confidence 4678999999999999888863 456666777776 5443 3447788999854 66544
No 189
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=97.84 E-value=0.00015 Score=46.77 Aligned_cols=56 Identities=20% Similarity=0.365 Sum_probs=43.4
Q ss_pred EEEEECCCChhhHhhHHHHHHHHHhCCCeEEEEEECCCCchh----HHHHCCCCcccEEEEEeCCeEE
Q psy5680 78 LAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGE----IAREFEVQAVPTVIGFRNGDPV 141 (201)
Q Consensus 78 vv~f~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~----l~~~~~v~~~Pti~~~~~G~~v 141 (201)
++.|+.+||+.|++....|++ .++.+..+|+++. ++ +.+..+-..+|++++ +|+.+
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~-----~gi~~~~~di~~~-~~~~~el~~~~g~~~vP~v~i--~~~~i 62 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLRE-----KGLPYVEINIDIF-PERKAELEERTGSSVVPQIFF--NEKLV 62 (73)
T ss_pred EEEEecCCChhHHHHHHHHHH-----CCCceEEEECCCC-HHHHHHHHHHhCCCCcCEEEE--CCEEE
Confidence 678999999999999988886 3577778898887 54 555567788899855 66654
No 190
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=97.81 E-value=9.8e-05 Score=50.87 Aligned_cols=57 Identities=25% Similarity=0.387 Sum_probs=39.1
Q ss_pred EEEEEECCCChhhHhhHHHHHHHHHhCCCeEEEEEECCCCchh-------HHHHCCCCcccEEEEEeCCeEE
Q psy5680 77 VLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGE-------IAREFEVQAVPTVIGFRNGDPV 141 (201)
Q Consensus 77 vvv~f~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~-------l~~~~~v~~~Pti~~~~~G~~v 141 (201)
-++.|..+|||+|.++...|.+. ++.+..+|++.. ++ +.+..+...+|.+++ +|+.+
T Consensus 9 ~Vvvysk~~Cp~C~~ak~~L~~~-----~i~~~~vdid~~-~~~~~~~~~l~~~tg~~tvP~Vfi--~g~~i 72 (99)
T TIGR02189 9 AVVIFSRSSCCMCHVVKRLLLTL-----GVNPAVHEIDKE-PAGKDIENALSRLGCSPAVPAVFV--GGKLV 72 (99)
T ss_pred CEEEEECCCCHHHHHHHHHHHHc-----CCCCEEEEcCCC-ccHHHHHHHHHHhcCCCCcCeEEE--CCEEE
Confidence 37789999999999999877765 344456666644 32 233346789999843 67555
No 191
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=97.80 E-value=0.00023 Score=55.55 Aligned_cols=39 Identities=23% Similarity=0.407 Sum_probs=31.8
Q ss_pred CCcEEEEEECCCChhhHhhHHHH---HHHHHhCCC-eEEEEEE
Q psy5680 74 RNPVLAYFFKPSCGFCKQLEPKI---STVSETTSG-VEFVKIN 112 (201)
Q Consensus 74 ~~~vvv~f~a~wC~~C~~~~~~l---~~l~~~~~~-~~~~~vd 112 (201)
+++.||.|+.-.||+|..+.+.+ +.+.+.+++ +.++.+.
T Consensus 37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~v~~~~~~ 79 (207)
T PRK10954 37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEGTKMTKYH 79 (207)
T ss_pred CCCeEEEEeCCCCccHHHhcccccchHHHHHhCCCCCeEEEec
Confidence 57789999999999999999876 788888875 5555443
No 192
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.75 E-value=0.00078 Score=60.26 Aligned_cols=120 Identities=13% Similarity=0.131 Sum_probs=89.8
Q ss_pred HhHHHHHH-hCCCc-EEEEEECCCChhhHhhHHHHHHHHHhCCCeEEEEEECCCCchhHHHHCCCCcccEEEEEe-CCeE
Q psy5680 64 IDDFKQTI-RGRNP-VLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTVIGFR-NGDP 140 (201)
Q Consensus 64 ~~~~~~~~-~~~~~-vvv~f~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~l~~~~~v~~~Pti~~~~-~G~~ 140 (201)
.+++...+ .-.++ .++.|+.+.|..|..+...+++++..-+.+.+...|..++ .+++++|++...|++.+++ +|+.
T Consensus 354 ~~~l~~~~~~l~~~v~l~~~~~~~~~~~~e~~~~l~e~~~~s~~i~~~~~~~~~~-~~~~~~~~v~~~P~~~i~~~~~~~ 432 (555)
T TIGR03143 354 RQQLVGIFGRLENPVTLLLFLDGSNEKSAELQSFLGEFASLSEKLNSEAVNRGEE-PESETLPKITKLPTVALLDDDGNY 432 (555)
T ss_pred HHHHHHHHHhcCCCEEEEEEECCCchhhHHHHHHHHHHHhcCCcEEEEEeccccc-hhhHhhcCCCcCCEEEEEeCCCcc
Confidence 34466666 44455 5778888899999999999999996665588888898888 8999999999999999994 5544
Q ss_pred E-EEEeCCCCHHHHHHHHHHHHhhhhhccccccCCCCccHHHHHHHHhhcce
Q psy5680 141 V-DMVVGNADQDVIQTLVSKLSQKLATHYQVDLTTGTPDQVYLIVLLRYDQV 191 (201)
Q Consensus 141 v-~~~~G~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (201)
. .+|.|...-.+|..+|...+....... ..++..++.+-..++.
T Consensus 433 ~~i~f~g~P~G~Ef~s~i~~i~~~~~~~~-------~l~~~~~~~i~~~~~~ 477 (555)
T TIGR03143 433 TGLKFHGVPSGHELNSFILALYNAAGPGQ-------PLGEELLEKIKKITKP 477 (555)
T ss_pred cceEEEecCccHhHHHHHHHHHHhcCCCC-------CCCHHHHHHHHhcCCC
Confidence 3 489999999999999999876543322 3344455555554443
No 193
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=97.74 E-value=0.00025 Score=49.88 Aligned_cols=95 Identities=13% Similarity=0.168 Sum_probs=67.9
Q ss_pred CHhHHHHHHhCCCcEEEEEE----CCCChhhHhhHHHHHHHHHhCC-C-eEEEEEECCCCchhHHHHCCCCc----ccEE
Q psy5680 63 KIDDFKQTIRGRNPVLAYFF----KPSCGFCKQLEPKISTVSETTS-G-VEFVKINVENGGGEIAREFEVQA----VPTV 132 (201)
Q Consensus 63 ~~~~~~~~~~~~~~vvv~f~----a~wC~~C~~~~~~l~~l~~~~~-~-~~~~~vd~~~~~~~l~~~~~v~~----~Pti 132 (201)
+.++..... ..+.++.|+ +..-..-..+...+.++|+.++ + +.|+.+|.++. ....+.||+.. +|++
T Consensus 5 ~~en~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~gki~Fv~~D~~~~-~~~l~~fgl~~~~~~~P~~ 81 (111)
T cd03073 5 TKDNRAQFT--KKPLVVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPDRKLNFAVADKEDF-SHELEEFGLDFSGGEKPVV 81 (111)
T ss_pred ccchHHHhc--cCCeEEEEEeccccCChhHHHHHHHHHHHHHHHCcCCeEEEEEEcHHHH-HHHHHHcCCCcccCCCCEE
Confidence 555555553 334444443 2233444667889999999999 7 99999999988 77889999984 9999
Q ss_pred EEEeCCeEEEEEeCCC-CHHHHHHHHHHH
Q psy5680 133 IGFRNGDPVDMVVGNA-DQDVIQTLVSKL 160 (201)
Q Consensus 133 ~~~~~G~~v~~~~G~~-~~~~l~~~i~~~ 160 (201)
.++..........+.. +.+.|.+|+++.
T Consensus 82 ~i~~~~~~KY~~~~~~~t~e~i~~F~~~f 110 (111)
T cd03073 82 AIRTAKGKKYVMEEEFSDVDALEEFLEDF 110 (111)
T ss_pred EEEeCCCCccCCCcccCCHHHHHHHHHHh
Confidence 9985322323356667 899999999864
No 194
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=97.65 E-value=0.00058 Score=46.82 Aligned_cols=68 Identities=29% Similarity=0.514 Sum_probs=45.3
Q ss_pred hHHHHHHhCCCcEEEEEE----CCCChhhHhhHHHHHHHHHhCCCeEEEEEECCCCchhHH----HHCCCCcccEEEEEe
Q psy5680 65 DDFKQTIRGRNPVLAYFF----KPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIA----REFEVQAVPTVIGFR 136 (201)
Q Consensus 65 ~~~~~~~~~~~~vvv~f~----a~wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~l~----~~~~v~~~Pti~~~~ 136 (201)
+.+++++++ .+|+|+-. ++|||+|.+....|.+. ++.+..+|++++ ++.. +..+-..+|.+++
T Consensus 3 ~~v~~~i~~-~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~-----~i~~~~~di~~~-~~~~~~l~~~tg~~tvP~vfi-- 73 (97)
T TIGR00365 3 ERIKEQIKE-NPVVLYMKGTPQFPQCGFSARAVQILKAC-----GVPFAYVNVLED-PEIRQGIKEYSNWPTIPQLYV-- 73 (97)
T ss_pred HHHHHHhcc-CCEEEEEccCCCCCCCchHHHHHHHHHHc-----CCCEEEEECCCC-HHHHHHHHHHhCCCCCCEEEE--
Confidence 345555644 44555443 39999999999888774 456778888877 5443 3456678898865
Q ss_pred CCeEE
Q psy5680 137 NGDPV 141 (201)
Q Consensus 137 ~G~~v 141 (201)
+|+.+
T Consensus 74 ~g~~i 78 (97)
T TIGR00365 74 KGEFV 78 (97)
T ss_pred CCEEE
Confidence 66544
No 195
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.56 E-value=0.00057 Score=45.14 Aligned_cols=57 Identities=23% Similarity=0.561 Sum_probs=41.7
Q ss_pred EEEEEECCCChhhHhhHHHHHHHHHhCCCeEEEEEECCCCc----hhHHHHC-CCCcccEEEEEeCCeE
Q psy5680 77 VLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGG----GEIAREF-EVQAVPTVIGFRNGDP 140 (201)
Q Consensus 77 vvv~f~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~----~~l~~~~-~v~~~Pti~~~~~G~~ 140 (201)
.++.|..+|||+|.+....|.+ .++.+..++++... .+..++. |...+|.+++ +|+.
T Consensus 2 ~v~iyt~~~CPyC~~ak~~L~~-----~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i--~~~~ 63 (80)
T COG0695 2 NVTIYTKPGCPYCKRAKRLLDR-----KGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFI--GGKH 63 (80)
T ss_pred CEEEEECCCCchHHHHHHHHHH-----cCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEE--CCEE
Confidence 3678999999999999988885 35677777777661 1344555 7899999888 5543
No 196
>PRK10638 glutaredoxin 3; Provisional
Probab=97.53 E-value=0.00065 Score=44.99 Aligned_cols=56 Identities=18% Similarity=0.501 Sum_probs=41.7
Q ss_pred EEEEECCCChhhHhhHHHHHHHHHhCCCeEEEEEECCCCchh----HHHHCCCCcccEEEEEeCCeEE
Q psy5680 78 LAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGE----IAREFEVQAVPTVIGFRNGDPV 141 (201)
Q Consensus 78 vv~f~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~----l~~~~~v~~~Pti~~~~~G~~v 141 (201)
++.|..+||++|++....+++. ++.+..+|++.. ++ +.+..+...+|++++ +|+.+
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~-----gi~y~~~dv~~~-~~~~~~l~~~~g~~~vP~i~~--~g~~i 63 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK-----GVSFQEIPIDGD-AAKREEMIKRSGRTTVPQIFI--DAQHI 63 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc-----CCCcEEEECCCC-HHHHHHHHHHhCCCCcCEEEE--CCEEE
Confidence 6788899999999999888863 566677888776 43 344557788998844 67554
No 197
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=97.52 E-value=0.004 Score=44.16 Aligned_cols=100 Identities=14% Similarity=0.208 Sum_probs=69.7
Q ss_pred EEEeCCHhHHHHHHhCCCcEEEEEECCCChhhHhhHHHHHHHH-Hh---CCCeEEEEEECCCC----chhHHHHCCC--C
Q psy5680 58 YLIIEKIDDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVS-ET---TSGVEFVKINVENG----GGEIAREFEV--Q 127 (201)
Q Consensus 58 v~~l~~~~~~~~~~~~~~~vvv~f~a~wC~~C~~~~~~l~~l~-~~---~~~~~~~~vd~~~~----~~~l~~~~~v--~ 127 (201)
..+| +.-+|++.+.+.+.++|.|=... |+- .-+..+.+++ +. -+++-++.|-+... +.+|+++|++ .
T Consensus 6 ~v~L-D~~tFdKvi~kf~~~LVKFD~ay-PyG-eKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~ke 82 (126)
T PF07912_consen 6 CVPL-DELTFDKVIPKFKYVLVKFDVAY-PYG-EKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDKE 82 (126)
T ss_dssp SEEE-STTHHHHHGGGSSEEEEEEEESS---C-HHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SCC
T ss_pred eeec-cceehhheeccCceEEEEEeccC-CCc-chHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCcc
Confidence 5788 88999999988899999996443 122 2234556666 33 33488888887532 3899999999 5
Q ss_pred cccEEEEEeCC-eEEEEE--eCCCCHHHHHHHHHHH
Q psy5680 128 AVPTVIGFRNG-DPVDMV--VGNADQDVIQTLVSKL 160 (201)
Q Consensus 128 ~~Pti~~~~~G-~~v~~~--~G~~~~~~l~~~i~~~ 160 (201)
.+|.+.+|.+| +...++ .|..+.+.|..|+.++
T Consensus 83 ~fPv~~LF~~~~~~pv~~p~~~~~t~~~l~~fvk~~ 118 (126)
T PF07912_consen 83 DFPVIYLFVGDKEEPVRYPFDGDVTADNLQRFVKSN 118 (126)
T ss_dssp C-SEEEEEESSTTSEEEE-TCS-S-HHHHHHHHHHT
T ss_pred cCCEEEEecCCCCCCccCCccCCccHHHHHHHHHhC
Confidence 68999999744 344466 7889999999999876
No 198
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=97.51 E-value=0.0013 Score=44.91 Aligned_cols=100 Identities=19% Similarity=0.272 Sum_probs=78.1
Q ss_pred EEEeCCHhHHHHHHhCCCcEEEEEECCCChhhHhhHHHHHHHHHhCCC-eEEEEEECCCC-chhHHHHCCCC----cccE
Q psy5680 58 YLIIEKIDDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENG-GGEIAREFEVQ----AVPT 131 (201)
Q Consensus 58 v~~l~~~~~~~~~~~~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~-~~~~~vd~~~~-~~~l~~~~~v~----~~Pt 131 (201)
+..|++..+|..++.....|+|.|..+.-..-. ....+.++++...| -+++.|||... ++.||+++.+. .-|.
T Consensus 3 ie~i~d~KdfKKLLRTr~NVLvLy~ks~k~a~~-~Lk~~~~~A~~vkG~gT~~~vdCgd~e~kKLCKKlKv~~~~kp~~~ 81 (112)
T cd03067 3 IEDISDHKDFKKLLRTRNNVLVLYSKSAKSAEA-LLKLLSDVAQAVKGQGTIAWIDCGDSESRKLCKKLKVDPSSKPKPV 81 (112)
T ss_pred cccccchHHHHHHHhhcCcEEEEEecchhhHHH-HHHHHHHHHHHhcCceeEEEEecCChHHHHHHHHHccCCCCCCCcc
Confidence 456667889999997777788888877644443 34477888888888 88999999862 28899999998 5564
Q ss_pred -EEEEeCCeEEEEEeCCCCHHHHHHHHH
Q psy5680 132 -VIGFRNGDPVDMVVGNADQDVIQTLVS 158 (201)
Q Consensus 132 -i~~~~~G~~v~~~~G~~~~~~l~~~i~ 158 (201)
+.-|++|.-.-.|+...+...+..|++
T Consensus 82 ~LkHYKdG~fHkdYdR~~t~kSmv~Flr 109 (112)
T cd03067 82 ELKHYKDGDFHTEYNRQLTFKSMVAFLR 109 (112)
T ss_pred hhhcccCCCccccccchhhHHHHHHHhh
Confidence 566799988878888888888888875
No 199
>PRK10824 glutaredoxin-4; Provisional
Probab=97.44 E-value=0.00061 Score=48.19 Aligned_cols=70 Identities=29% Similarity=0.539 Sum_probs=44.1
Q ss_pred HhHHHHHHhCCCcEEEEEEC----CCChhhHhhHHHHHHHHHhCCCeEEEEEECCCCchhHHHH----CCCCcccEEEEE
Q psy5680 64 IDDFKQTIRGRNPVLAYFFK----PSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIARE----FEVQAVPTVIGF 135 (201)
Q Consensus 64 ~~~~~~~~~~~~~vvv~f~a----~wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~l~~~----~~v~~~Pti~~~ 135 (201)
.+.+++++++ .+|+|+--. ||||+|++....|..+ ++.+..+|++.. +++... -+-..+|.+++
T Consensus 5 ~~~v~~~I~~-~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~-----~i~~~~idi~~d-~~~~~~l~~~sg~~TVPQIFI- 76 (115)
T PRK10824 5 IEKIQRQIAE-NPILLYMKGSPKLPSCGFSAQAVQALSAC-----GERFAYVDILQN-PDIRAELPKYANWPTFPQLWV- 76 (115)
T ss_pred HHHHHHHHhc-CCEEEEECCCCCCCCCchHHHHHHHHHHc-----CCCceEEEecCC-HHHHHHHHHHhCCCCCCeEEE-
Confidence 4455666644 444444333 6999999999888876 344445677766 554433 35566777766
Q ss_pred eCCeEEE
Q psy5680 136 RNGDPVD 142 (201)
Q Consensus 136 ~~G~~v~ 142 (201)
+|+.++
T Consensus 77 -~G~~IG 82 (115)
T PRK10824 77 -DGELVG 82 (115)
T ss_pred -CCEEEc
Confidence 776653
No 200
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=97.36 E-value=0.001 Score=44.32 Aligned_cols=59 Identities=27% Similarity=0.526 Sum_probs=43.2
Q ss_pred EEEEECCCChhhHhhHHHHHHHHHhCCC-eEEEEEE--CCCC-----------------------------chhHHHHCC
Q psy5680 78 LAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKIN--VENG-----------------------------GGEIAREFE 125 (201)
Q Consensus 78 vv~f~a~wC~~C~~~~~~l~~l~~~~~~-~~~~~vd--~~~~-----------------------------~~~l~~~~~ 125 (201)
+..|+.+.|++|..+.+.+.++.+..++ +.+.... .... +..+..++|
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 80 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARALG 80 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcC
Confidence 4689999999999999999999766655 4444433 3221 124567889
Q ss_pred CCcccEEEEEe
Q psy5680 126 VQAVPTVIGFR 136 (201)
Q Consensus 126 v~~~Pti~~~~ 136 (201)
+.++|++++..
T Consensus 81 ~~g~Pt~v~~~ 91 (98)
T cd02972 81 VTGTPTFVVNG 91 (98)
T ss_pred CCCCCEEEECC
Confidence 99999999853
No 201
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=97.23 E-value=0.0023 Score=43.11 Aligned_cols=60 Identities=25% Similarity=0.544 Sum_probs=41.3
Q ss_pred CCcEEEEEEC----CCChhhHhhHHHHHHHHHhCCCeEEEEEECCCCchhH----HHHCCCCcccEEEEEeCCeEE
Q psy5680 74 RNPVLAYFFK----PSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEI----AREFEVQAVPTVIGFRNGDPV 141 (201)
Q Consensus 74 ~~~vvv~f~a----~wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~l----~~~~~v~~~Pti~~~~~G~~v 141 (201)
+.+|+|+-.+ +||++|++....|.+. ++.+-.+|++.. +++ .+..+-..+|.+++ +|+.+
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~-----~i~y~~idv~~~-~~~~~~l~~~~g~~tvP~vfi--~g~~i 74 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQL-----GVDFGTFDILED-EEVRQGLKEYSNWPTFPQLYV--NGELV 74 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHc-----CCCeEEEEcCCC-HHHHHHHHHHhCCCCCCEEEE--CCEEE
Confidence 4455555433 7999999999888775 366777788776 544 34457788999844 67554
No 202
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=97.10 E-value=0.006 Score=48.31 Aligned_cols=100 Identities=14% Similarity=0.226 Sum_probs=71.5
Q ss_pred EEEeCCHhH---HHHHHhCCCcEEEEEECCCChhhHhhHHHHHHHHHhCCC-eEEEEEECCCCc----------------
Q psy5680 58 YLIIEKIDD---FKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENGG---------------- 117 (201)
Q Consensus 58 v~~l~~~~~---~~~~~~~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~-~~~~~vd~~~~~---------------- 117 (201)
++.+ +++. +-+....++|.|+.|.+-.||+=+.-...+++++++|.+ +.|+.|-+.+..
T Consensus 84 vv~l-~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~adFl~VYI~EAHpsDgW~~~~~~~~i~q 162 (237)
T PF00837_consen 84 VVTL-DGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVADFLIVYIEEAHPSDGWAFGNNPYEIPQ 162 (237)
T ss_pred eEee-CCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhhheehhhHhhhCcCCCccCCCCceeecC
Confidence 7788 5555 445557899999999999999999999999999999998 667666555440
Q ss_pred -h----------hH------------------HHHCCCCcccE-EEEEeCCeEEEE-EeCC--CCHHHHHHHHHHH
Q psy5680 118 -G----------EI------------------AREFEVQAVPT-VIGFRNGDPVDM-VVGN--ADQDVIQTLVSKL 160 (201)
Q Consensus 118 -~----------~l------------------~~~~~v~~~Pt-i~~~~~G~~v~~-~~G~--~~~~~l~~~i~~~ 160 (201)
+ .+ ...| ..+|. +.++++|+++.. -.|+ .+.+++.+||++.
T Consensus 163 h~sledR~~aA~~l~~~~~~~pi~vD~mdN~~~~~Y--gA~PeRlyIi~~gkv~Y~Gg~GP~~y~~~e~r~~L~~~ 236 (237)
T PF00837_consen 163 HRSLEDRLRAAKLLKEEFPQCPIVVDTMDNNFNKAY--GALPERLYIIQDGKVVYKGGPGPFGYSPEELREWLEKY 236 (237)
T ss_pred CCCHHHHHHHHHHHHhhCCCCCEEEEccCCHHHHHh--CCCcceEEEEECCEEEEeCCCCCCcCCHHHHHHHHHhc
Confidence 1 11 1111 25675 667789987642 2232 5789999999874
No 203
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=97.10 E-value=0.0066 Score=45.21 Aligned_cols=88 Identities=18% Similarity=0.234 Sum_probs=62.9
Q ss_pred CCCcEEEEEE-CCCChhhHhhHHHHHHHHHhCCC--eEEEEEECCCC--------------------chhHHHHCCCCc-
Q psy5680 73 GRNPVLAYFF-KPSCGFCKQLEPKISTVSETTSG--VEFVKINVENG--------------------GGEIAREFEVQA- 128 (201)
Q Consensus 73 ~~~~vvv~f~-a~wC~~C~~~~~~l~~l~~~~~~--~~~~~vd~~~~--------------------~~~l~~~~~v~~- 128 (201)
.+++||++|| ..++|.|....-.++....++.. ..++.|..|.. +..+++.||+..
T Consensus 29 ~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F~~k~~L~f~LLSD~~~~v~~~ygv~~~ 108 (157)
T COG1225 29 RGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHKKFAEKHGLTFPLLSDEDGEVAEAYGVWGE 108 (157)
T ss_pred cCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCCceeeECCcHHHHHHhCcccc
Confidence 6778999998 67899998888888888777765 77777777655 267788888743
Q ss_pred -----------ccEEEEE-eCCeEEEEEeCC---CCHHHHHHHHHHH
Q psy5680 129 -----------VPTVIGF-RNGDPVDMVVGN---ADQDVIQTLVSKL 160 (201)
Q Consensus 129 -----------~Pti~~~-~~G~~v~~~~G~---~~~~~l~~~i~~~ 160 (201)
.++.+++ ++|++...+... ...+++++.|.+.
T Consensus 109 k~~~gk~~~~~~R~TfvId~dG~I~~~~~~v~~~~h~~~vl~~l~~l 155 (157)
T COG1225 109 KKMYGKEYMGIERSTFVIDPDGKIRYVWRKVKVKGHADEVLAALKKL 155 (157)
T ss_pred cccCccccccccceEEEECCCCeEEEEecCCCCcccHHHHHHHHHHh
Confidence 4566666 678887766543 2445666655543
No 204
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.00 E-value=0.0027 Score=57.00 Aligned_cols=82 Identities=13% Similarity=0.285 Sum_probs=68.6
Q ss_pred EEEeCCHhHHHHHHhCCCcEEEEEECCCChhhHhhHHHH---HHHHHhCCC-eEEEEEECCCCchhHHHHCC--------
Q psy5680 58 YLIIEKIDDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKI---STVSETTSG-VEFVKINVENGGGEIAREFE-------- 125 (201)
Q Consensus 58 v~~l~~~~~~~~~~~~~~~vvv~f~a~wC~~C~~~~~~l---~~l~~~~~~-~~~~~vd~~~~~~~l~~~~~-------- 125 (201)
+..- +.+.|.++-.+++|+++-...+||..|..|..+- +++++-+.. +.-++||-++- |++-+.|.
T Consensus 28 W~pW-~~eAf~~A~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~FV~IKVDREER-PDvD~~Ym~~~q~~tG 105 (667)
T COG1331 28 WYPW-GEEAFAKAKEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNENFVPVKVDREER-PDVDSLYMNASQAITG 105 (667)
T ss_pred cccc-CHHHHHHHHHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhCceeeeEChhhc-cCHHHHHHHHHHHhcc
Confidence 6777 8999999999999999999999999999998864 777777765 78889998888 88877664
Q ss_pred CCcccEEEEE-eCCeEE
Q psy5680 126 VQAVPTVIGF-RNGDPV 141 (201)
Q Consensus 126 v~~~Pti~~~-~~G~~v 141 (201)
-.++|-.+|. ++|+..
T Consensus 106 ~GGWPLtVfLTPd~kPF 122 (667)
T COG1331 106 QGGWPLTVFLTPDGKPF 122 (667)
T ss_pred CCCCceeEEECCCCcee
Confidence 6689987777 788764
No 205
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=96.99 E-value=0.015 Score=40.07 Aligned_cols=95 Identities=11% Similarity=0.113 Sum_probs=68.5
Q ss_pred EEEeCCHhHHHHHHh-CCCcEEEEEECCCChhhHhhHHHHHHHHHhCCC-eEEEEEECCCCchhHHHHCCCCcccEEEEE
Q psy5680 58 YLIIEKIDDFKQTIR-GRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENGGGEIAREFEVQAVPTVIGF 135 (201)
Q Consensus 58 v~~l~~~~~~~~~~~-~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~-~~~~~vd~~~~~~~l~~~~~v~~~Pti~~~ 135 (201)
+..|++.++++.++. ++..++|-|+..--+ .....+.+++..+.+ +.|+... . +++...+++. .|.++++
T Consensus 2 v~~i~~~~~~e~~~~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~---~-~~~~~~~~~~-~~~i~l~ 73 (102)
T cd03066 2 VEIINSERELQAFENIEDDIKLIGYFKSEDS---EHYKAFEEAAEEFHPYIKFFATF---D-SKVAKKLGLK-MNEVDFY 73 (102)
T ss_pred ceEcCCHHHHHHHhcccCCeEEEEEECCCCC---HHHHHHHHHHHhhhcCCEEEEEC---c-HHHHHHcCCC-CCcEEEe
Confidence 567778888999997 788888888876444 345678888888854 7774433 3 5677778765 6889998
Q ss_pred eC-CeEEEEE-eCCCCHHHHHHHHHHH
Q psy5680 136 RN-GDPVDMV-VGNADQDVIQTLVSKL 160 (201)
Q Consensus 136 ~~-G~~v~~~-~G~~~~~~l~~~i~~~ 160 (201)
++ ......| .|..+.+.|.+||...
T Consensus 74 ~~~~e~~~~y~~g~~~~~~l~~fi~~~ 100 (102)
T cd03066 74 EPFMEEPVTIPDKPYSEEELVDFVEEH 100 (102)
T ss_pred CCCCCCCcccCCCCCCHHHHHHHHHHh
Confidence 65 3333356 7778999999999764
No 206
>KOG1752|consensus
Probab=96.93 E-value=0.0044 Score=43.00 Aligned_cols=68 Identities=22% Similarity=0.445 Sum_probs=44.8
Q ss_pred HHHHHHhCCCcEEEEEECCCChhhHhhHHHHHHHHHhCCC-eEEEEEECCCCchhHHHHC----CCCcccEEEEEeCCeE
Q psy5680 66 DFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENGGGEIAREF----EVQAVPTVIGFRNGDP 140 (201)
Q Consensus 66 ~~~~~~~~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~-~~~~~vd~~~~~~~l~~~~----~v~~~Pti~~~~~G~~ 140 (201)
.+.+.+.+ .-+|.|..+||++|..+...|.+ ++. ..++.+|-+.++.++.+.+ +-+.+|.+++ +|+-
T Consensus 6 ~v~~~i~~--~~VVifSKs~C~~c~~~k~ll~~----~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI--~Gk~ 77 (104)
T KOG1752|consen 6 KVRKMISE--NPVVIFSKSSCPYCHRAKELLSD----LGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFI--GGKF 77 (104)
T ss_pred HHHHHhhc--CCEEEEECCcCchHHHHHHHHHh----CCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEE--CCEE
Confidence 45555532 23567889999999998877776 333 6777787776633444333 3567898877 6755
Q ss_pred E
Q psy5680 141 V 141 (201)
Q Consensus 141 v 141 (201)
+
T Consensus 78 i 78 (104)
T KOG1752|consen 78 I 78 (104)
T ss_pred E
Confidence 4
No 207
>PTZ00062 glutaredoxin; Provisional
Probab=96.85 E-value=0.0074 Score=47.06 Aligned_cols=69 Identities=17% Similarity=0.319 Sum_probs=44.5
Q ss_pred hHHHHHHhCCCcEEEEE---ECCCChhhHhhHHHHHHHHHhCCCeEEEEEECCCCchhHHH----HCCCCcccEEEEEeC
Q psy5680 65 DDFKQTIRGRNPVLAYF---FKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAR----EFEVQAVPTVIGFRN 137 (201)
Q Consensus 65 ~~~~~~~~~~~~vvv~f---~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~l~~----~~~v~~~Pti~~~~~ 137 (201)
+.+++++++++.++..= +.|||++|++....|++. ++.+..+|+++. ++..+ .-+-..+|.+++ +
T Consensus 104 ~~v~~li~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~-----~i~y~~~DI~~d-~~~~~~l~~~sg~~TvPqVfI--~ 175 (204)
T PTZ00062 104 EKIERLIRNHKILLFMKGSKTFPFCRFSNAVVNMLNSS-----GVKYETYNIFED-PDLREELKVYSNWPTYPQLYV--N 175 (204)
T ss_pred HHHHHHHhcCCEEEEEccCCCCCCChhHHHHHHHHHHc-----CCCEEEEEcCCC-HHHHHHHHHHhCCCCCCeEEE--C
Confidence 34555555544444444 347999999998888764 466778888877 65543 335556777765 6
Q ss_pred CeEE
Q psy5680 138 GDPV 141 (201)
Q Consensus 138 G~~v 141 (201)
|+.+
T Consensus 176 G~~I 179 (204)
T PTZ00062 176 GELI 179 (204)
T ss_pred CEEE
Confidence 7654
No 208
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=96.78 E-value=0.0081 Score=45.71 Aligned_cols=26 Identities=27% Similarity=0.731 Sum_probs=21.9
Q ss_pred EEECCCChhhHhhHHHHHHHHHhCCC
Q psy5680 80 YFFKPSCGFCKQLEPKISTVSETTSG 105 (201)
Q Consensus 80 ~f~a~wC~~C~~~~~~l~~l~~~~~~ 105 (201)
+|.-|.|+.|....|.|.++...+++
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~ 27 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGN 27 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-T
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCC
Confidence 68999999999999999999999987
No 209
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=96.76 E-value=0.0058 Score=52.71 Aligned_cols=57 Identities=16% Similarity=0.384 Sum_probs=42.4
Q ss_pred EEEEEECCCChhhHhhHHHHHHHHHhCCCeEEEEEECCCCchh---HHHH---------CCCCcccEEEEEeCCeEE
Q psy5680 77 VLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGE---IARE---------FEVQAVPTVIGFRNGDPV 141 (201)
Q Consensus 77 vvv~f~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~---l~~~---------~~v~~~Pti~~~~~G~~v 141 (201)
.|+.|+.+|||+|.+....|.+. ++.+-.+|+++. ++ +.++ .|...+|++++ +|+.+
T Consensus 3 ~V~vys~~~Cp~C~~aK~~L~~~-----gi~~~~idi~~~-~~~~~~~~~~~~~~~~~~~g~~tvP~ifi--~~~~i 71 (410)
T PRK12759 3 EVRIYTKTNCPFCDLAKSWFGAN-----DIPFTQISLDDD-VKRAEFYAEVNKNILLVEEHIRTVPQIFV--GDVHI 71 (410)
T ss_pred cEEEEeCCCCHHHHHHHHHHHHC-----CCCeEEEECCCC-hhHHHHHHHHhhccccccCCCCccCeEEE--CCEEE
Confidence 37899999999999999888773 577778888876 53 2223 36788999966 56544
No 210
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=96.72 E-value=0.033 Score=38.48 Aligned_cols=94 Identities=14% Similarity=0.229 Sum_probs=66.1
Q ss_pred EEEeCCHhHHHHHHhCCCcEEEEEECCCChhhHhhHHHHHHHHHhCCC-eEEEEEECCCCchhHHHHCCCCcccEEEEEe
Q psy5680 58 YLIIEKIDDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENGGGEIAREFEVQAVPTVIGFR 136 (201)
Q Consensus 58 v~~l~~~~~~~~~~~~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~-~~~~~vd~~~~~~~l~~~~~v~~~Pti~~~~ 136 (201)
+.++++.++++..+..++.++|-|+..--. .....+.+++..+.+ +.|+... . .++...+++ .|++++|+
T Consensus 2 ~~~i~s~~~l~~f~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~---~-~~~~~~~~~--~~~ivl~~ 72 (104)
T cd03069 2 SVELRTEAEFEKFLSDDDASVVGFFEDEDS---KLLSEFLKAADTLRESFRFAHTS---D-KQLLEKYGY--GEGVVLFR 72 (104)
T ss_pred ccccCCHHHHHHHhccCCcEEEEEEcCCCc---hHHHHHHHHHHhhhhcCEEEEEC---h-HHHHHhcCC--CCceEEEe
Confidence 456667888888887777777777766433 356677888888854 7775443 2 567788888 68888883
Q ss_pred C------C-eEEEEEeCCCCHHHHHHHHHHH
Q psy5680 137 N------G-DPVDMVVGNADQDVIQTLVSKL 160 (201)
Q Consensus 137 ~------G-~~v~~~~G~~~~~~l~~~i~~~ 160 (201)
. - .....|.|..+.+.|.+||...
T Consensus 73 p~~~~~k~de~~~~y~g~~~~~~l~~fi~~~ 103 (104)
T cd03069 73 PPRLSNKFEDSSVKFDGDLDSSKIKKFIREN 103 (104)
T ss_pred chhhhcccCcccccccCcCCHHHHHHHHHhh
Confidence 2 1 1223578878899999999764
No 211
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=96.62 E-value=0.013 Score=44.17 Aligned_cols=73 Identities=16% Similarity=0.287 Sum_probs=59.0
Q ss_pred hhHHHHHHHHHhCCC-eEEEEEECCCCchhHHHHCCCCcccEEEEEeCC-eEEEEEeCC-CCHHHHHHHHHHHHhhhhhc
Q psy5680 91 QLEPKISTVSETTSG-VEFVKINVENGGGEIAREFEVQAVPTVIGFRNG-DPVDMVVGN-ADQDVIQTLVSKLSQKLATH 167 (201)
Q Consensus 91 ~~~~~l~~l~~~~~~-~~~~~vd~~~~~~~l~~~~~v~~~Pti~~~~~G-~~v~~~~G~-~~~~~l~~~i~~~~~~~~~~ 167 (201)
.....+.++++.+.+ +.|+.+. + +++++++++.. |++++|+++ +....+.|. .+.++|.+||....-+.-.+
T Consensus 7 ~~~~~f~~~A~~~~~~~~F~~~~---~-~~~~~~~~~~~-p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~~~P~v~~ 81 (184)
T PF13848_consen 7 ELFEIFEEAAEKLKGDYQFGVTF---N-EELAKKYGIKE-PTIVVYKKFDEKPVVYDGDKFTPEELKKFIKKNSFPLVPE 81 (184)
T ss_dssp HHHHHHHHHHHHHTTTSEEEEEE-----HHHHHHCTCSS-SEEEEEECTTTSEEEESSSTTSHHHHHHHHHHHSSTSCEE
T ss_pred HHHHHHHHHHHhCcCCcEEEEEc---H-HHHHHHhCCCC-CcEEEeccCCCCceecccccCCHHHHHHHHHHhccccccc
Confidence 345678899999986 8888887 4 78999999999 999999874 445678886 79999999999997666544
Q ss_pred c
Q psy5680 168 Y 168 (201)
Q Consensus 168 ~ 168 (201)
.
T Consensus 82 ~ 82 (184)
T PF13848_consen 82 L 82 (184)
T ss_dssp E
T ss_pred c
Confidence 4
No 212
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=96.38 E-value=0.047 Score=41.45 Aligned_cols=35 Identities=17% Similarity=0.562 Sum_probs=29.0
Q ss_pred EEEEEECCCChhhHhhHHHHHHHHHhCCC--eEEEEE
Q psy5680 77 VLAYFFKPSCGFCKQLEPKISTVSETTSG--VEFVKI 111 (201)
Q Consensus 77 vvv~f~a~wC~~C~~~~~~l~~l~~~~~~--~~~~~v 111 (201)
.|.+|+..-||+|....+.+.++.+.+++ +.+..+
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~ 37 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPF 37 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEecc
Confidence 47889999999999999999999999965 444444
No 213
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=96.05 E-value=0.049 Score=40.49 Aligned_cols=44 Identities=14% Similarity=0.117 Sum_probs=31.5
Q ss_pred CCCcE-EEEEECCCChhhHhh-HHHHHHHHHhCCC--e-EEEEEECCCC
Q psy5680 73 GRNPV-LAYFFKPSCGFCKQL-EPKISTVSETTSG--V-EFVKINVENG 116 (201)
Q Consensus 73 ~~~~v-vv~f~a~wC~~C~~~-~~~l~~l~~~~~~--~-~~~~vd~~~~ 116 (201)
.++++ ++.|.+.||+.|... .+.+.+..+++.. + .++.+..|..
T Consensus 28 ~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~ 76 (155)
T cd03013 28 KGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDP 76 (155)
T ss_pred CCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCH
Confidence 34444 445558899999998 8888888888753 5 4777776644
No 214
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=95.74 E-value=0.12 Score=38.16 Aligned_cols=105 Identities=13% Similarity=0.147 Sum_probs=67.7
Q ss_pred ceEEEeCCHhHHHHHHhCCCcEEEEEECCCChhhHhhHHHHHHHHHhCCC--eEEEEEECCCC-------c---hhHH-H
Q psy5680 56 MAYLIIEKIDDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG--VEFVKINVENG-------G---GEIA-R 122 (201)
Q Consensus 56 ~~v~~l~~~~~~~~~~~~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~--~~~~~vd~~~~-------~---~~l~-~ 122 (201)
+.++.+ +.+.+.-.--++++++|.=.|+-|+.--+ -..|+.|+++|++ +.++.+-|+.. + .++| .
T Consensus 8 ~~~~~~-~G~~~~l~~~~GkVlLIVNtASkCGfTpQ-YegLe~Ly~ky~~~Gf~VLgFPcNQF~~QEPg~~eEI~~fC~~ 85 (162)
T COG0386 8 FSVKDI-DGEPVSLSDYKGKVLLIVNTASKCGFTPQ-YEGLEALYKKYKDKGFEVLGFPCNQFGGQEPGSDEEIAKFCQL 85 (162)
T ss_pred ceeecc-CCCCccHHHhCCcEEEEEEcccccCCcHh-HHHHHHHHHHHhhCCcEEEeccccccccCCCCCHHHHHHHHHh
Confidence 335666 55544333348999999999999987764 4467888888875 66655555433 0 0111 1
Q ss_pred HCCCC-----------------------c-------------ccEEEEEeCCeEEEEEeCCCCHHHHHHHHHHHHh
Q psy5680 123 EFEVQ-----------------------A-------------VPTVIGFRNGDPVDMVVGNADQDVIQTLVSKLSQ 162 (201)
Q Consensus 123 ~~~v~-----------------------~-------------~Pti~~~~~G~~v~~~~G~~~~~~l~~~i~~~~~ 162 (201)
.|||+ . +=-+++-++|+++.|+.-...++++...|+++++
T Consensus 86 ~YgVtFp~f~Ki~VnG~~a~PLy~~L~~~~~g~~~~~~IkWNFtKFLvdr~G~VV~Rf~p~t~P~d~~~~Ie~lL~ 161 (162)
T COG0386 86 NYGVTFPMFSKIDVNGKNAHPLYKYLKEQKPGKLGGKDIKWNFTKFLVDRDGNVVKRFSPKTKPEDIELAIEKLLA 161 (162)
T ss_pred ccCceeeeeeEEeecCCCCCcHHHHHHhcCCCCccCCccceeeEEEEEcCCCcEEEeeCCCCChhhHHHHHHHHhc
Confidence 12111 1 1123334799999999998999999998888764
No 215
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.61 E-value=0.19 Score=39.88 Aligned_cols=38 Identities=26% Similarity=0.472 Sum_probs=29.7
Q ss_pred hHHHHCCCCcccEEEEEeCCeEEEEEeCCCCHHHHHHHHHHHH
Q psy5680 119 EIAREFEVQAVPTVIGFRNGDPVDMVVGNADQDVIQTLVSKLS 161 (201)
Q Consensus 119 ~l~~~~~v~~~Pti~~~~~G~~v~~~~G~~~~~~l~~~i~~~~ 161 (201)
.+..++++.++|++++- |+ .+.|..+.+++...|....
T Consensus 206 ~~a~~~gv~gTPt~~v~--~~---~~~g~~~~~~l~~~i~~~~ 243 (244)
T COG1651 206 KLAQQLGVNGTPTFIVN--GK---LVPGLPDLDELKAIIDEAL 243 (244)
T ss_pred HHHHhcCCCcCCeEEEC--Ce---eecCCCCHHHHHHHHHHhh
Confidence 45578899999999884 33 6788888899888887654
No 216
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=95.14 E-value=0.14 Score=37.86 Aligned_cols=56 Identities=13% Similarity=0.280 Sum_probs=39.9
Q ss_pred EEEEECC------CChhhHhhHHHHHHHHHhCCCeEEEEEECCCCchh----HHHHCCC----CcccEEEEEeCCeEE
Q psy5680 78 LAYFFKP------SCGFCKQLEPKISTVSETTSGVEFVKINVENGGGE----IAREFEV----QAVPTVIGFRNGDPV 141 (201)
Q Consensus 78 vv~f~a~------wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~----l~~~~~v----~~~Pti~~~~~G~~v 141 (201)
++.|+++ +|++|..+...|+.+ ++.+-.+|++.. ++ +.+.++- ..+|.+++ +|+.+
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~-----~V~~~e~DVs~~-~~~~~EL~~~~g~~~~~~tvPqVFI--~G~~I 71 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESF-----RVKFDERDVSMD-SGFREELRELLGAELKAVSLPRVFV--DGRYL 71 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHC-----CCcEEEEECCCC-HHHHHHHHHHhCCCCCCCCCCEEEE--CCEEE
Confidence 4567777 999999999888764 577888999876 54 3344444 56787776 66554
No 217
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=95.02 E-value=0.55 Score=32.56 Aligned_cols=94 Identities=7% Similarity=0.143 Sum_probs=61.5
Q ss_pred EEEeCCHhHHHHHHhCC-CcEEEEEECCCChhhHhhHHHHHHHHHhCCC-eEEEEEECCCCchhHHHHCCCCcccEEEEE
Q psy5680 58 YLIIEKIDDFKQTIRGR-NPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENGGGEIAREFEVQAVPTVIGF 135 (201)
Q Consensus 58 v~~l~~~~~~~~~~~~~-~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~-~~~~~vd~~~~~~~l~~~~~v~~~Pti~~~ 135 (201)
++.|++.++++..+... ..++|-|+..--+ .....+.++|..+.+ +.|+... . .++..++++. .|.+++|
T Consensus 2 v~~i~s~~ele~f~~~~~~~~VVG~F~~~~~---~~~~~F~~vA~~~Rdd~~F~~t~---~-~~~~~~~~~~-~~~vvl~ 73 (107)
T cd03068 2 SKQLQTLKQVQEFLRDGDDVIIIGVFSGEED---PAYQLYQDAANSLREDYKFHHTF---D-SEIFKSLKVS-PGQLVVF 73 (107)
T ss_pred ceEcCCHHHHHHHHhcCCCEEEEEEECCCCC---HHHHHHHHHHHhcccCCEEEEEC---h-HHHHHhcCCC-CCceEEE
Confidence 56777888899988544 6677767666433 356678889988855 7775443 3 4677788876 4667776
Q ss_pred eCC-------eEEEEEeCC-CCHHH-HHHHHHH
Q psy5680 136 RNG-------DPVDMVVGN-ADQDV-IQTLVSK 159 (201)
Q Consensus 136 ~~G-------~~v~~~~G~-~~~~~-l~~~i~~ 159 (201)
+.- .....|.|. .+.++ |.+||.+
T Consensus 74 rp~~~~~k~e~~~~~~~~~~~~~~~~~~~f~~~ 106 (107)
T cd03068 74 QPEKFQSKYEPKSHVLNKKDSTSEDELKDFFKE 106 (107)
T ss_pred CcHHHhhhcCcceeeeeccccchHHHHHHHHhc
Confidence 321 123356765 45545 9999875
No 218
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=94.94 E-value=0.52 Score=30.09 Aligned_cols=72 Identities=14% Similarity=0.231 Sum_probs=50.4
Q ss_pred EEECCCChhhHhhHHHHHHHHHhCCCeEEEEEECCCCchhHHHHCCCCcccEEEEEeCCeEEEEEeCCCCHHHHHHHHHH
Q psy5680 80 YFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTVIGFRNGDPVDMVVGNADQDVIQTLVSK 159 (201)
Q Consensus 80 ~f~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~l~~~~~v~~~Pti~~~~~G~~v~~~~G~~~~~~l~~~i~~ 159 (201)
.|+.++|+.|++..-.++...- .+.+..++.....+++.+...-..+|++. .+|..+ .+...|.++|++
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i---~~~~~~v~~~~~~~~~~~~~p~~~vPvL~--~~g~~l------~dS~~I~~yL~~ 69 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGI---PYELVPVDPEEKRPEFLKLNPKGKVPVLV--DDGEVL------TDSAAIIEYLEE 69 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTE---EEEEEEEBTTSTSHHHHHHSTTSBSSEEE--ETTEEE------ESHHHHHHHHHH
T ss_pred CCCcCCChHHHHHHHHHHHcCC---eEEEeccCcccchhHHHhhcccccceEEE--ECCEEE------eCHHHHHHHHHH
Confidence 4788999999998766655311 15666776655425677777788899997 457654 366888888887
Q ss_pred HHh
Q psy5680 160 LSQ 162 (201)
Q Consensus 160 ~~~ 162 (201)
...
T Consensus 70 ~~~ 72 (75)
T PF13417_consen 70 RYP 72 (75)
T ss_dssp HST
T ss_pred HcC
Confidence 653
No 219
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=94.88 E-value=1.1 Score=39.78 Aligned_cols=91 Identities=15% Similarity=0.169 Sum_probs=65.9
Q ss_pred HhHHHHHH-hCCCcEEEEEECCCChhhHhhHHHHHHHHHhCCCeEEEEEECCCCchhHHHHCCCCcccEEEEEeCCeEE-
Q psy5680 64 IDDFKQTI-RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTVIGFRNGDPV- 141 (201)
Q Consensus 64 ~~~~~~~~-~~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~l~~~~~v~~~Pti~~~~~G~~v- 141 (201)
.+++...+ .-.++|-+.++.+.|+.|..+...++++++.-+.+.+...+.+. ...|++.+..+|+..
T Consensus 7 ~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s~ki~~~~~~~~~-----------~~~p~~~~~~~~~~~~ 75 (515)
T TIGR03140 7 LAQLKSYLASLENPVTLVLSAGSHEKSKELLELLDEIASLSDKISLTQNTADT-----------LRKPSFTILRDGADTG 75 (515)
T ss_pred HHHHHHHHHhcCCCEEEEEEeCCCchhHHHHHHHHHHHHhCCCeEEEEecCCc-----------CCCCeEEEecCCcccc
Confidence 34555555 45677766666668999999999999998877666664333221 345999888777643
Q ss_pred EEEeCCCCHHHHHHHHHHHHhhhh
Q psy5680 142 DMVVGNADQDVIQTLVSKLSQKLA 165 (201)
Q Consensus 142 ~~~~G~~~~~~l~~~i~~~~~~~~ 165 (201)
.+|.|...-.+|..+|...+.-..
T Consensus 76 i~f~g~P~g~Ef~s~i~~i~~~~~ 99 (515)
T TIGR03140 76 IRFAGIPGGHEFTSLVLAILQVGG 99 (515)
T ss_pred eEEEecCCcHHHHHHHHHHHHhcC
Confidence 489999999999999999875543
No 220
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=94.87 E-value=0.85 Score=31.72 Aligned_cols=100 Identities=8% Similarity=0.065 Sum_probs=72.2
Q ss_pred EEeCCHhHHHHHH--hCCCcEEEEEECCCChhhHhhHHHHHHHHHhCCC---eEEEEEECCCCchhHH----HHCCCCc-
Q psy5680 59 LIIEKIDDFKQTI--RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG---VEFVKINVENGGGEIA----REFEVQA- 128 (201)
Q Consensus 59 ~~l~~~~~~~~~~--~~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~---~~~~~vd~~~~~~~l~----~~~~v~~- 128 (201)
..+ +.++.-+.- ..++..++-|--+--+.-..|.+.++++|+.+.+ +.|+.||-+.. |-+. +.|+|.-
T Consensus 4 rkl-~~~~m~e~wedd~~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~F-Pllv~yWektF~IDl~ 81 (120)
T cd03074 4 RKL-KPENMFETWEDDLDGIHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDF-PLLVPYWEKTFGIDLF 81 (120)
T ss_pred hhc-cHHHHHHhhhcccCCceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccC-chhhHHHHhhcCcccC
Confidence 344 444433332 4578999999999999999999999999999764 99999999998 7665 3556653
Q ss_pred ccEEEEEe--CCe-EEEEEeC---CCCHHHHHHHHHHH
Q psy5680 129 VPTVIGFR--NGD-PVDMVVG---NADQDVIQTLVSKL 160 (201)
Q Consensus 129 ~Pti~~~~--~G~-~v~~~~G---~~~~~~l~~~i~~~ 160 (201)
-|.+-++. +.. +-....+ ..+.++|..||+..
T Consensus 82 ~PqIGVV~vtdadSvW~~m~~~~d~~t~~~Le~WiedV 119 (120)
T cd03074 82 RPQIGVVNVTDADSVWMEMDDDEDLPTAEELEDWIEDV 119 (120)
T ss_pred CCceeeEecccccceeEecccccccCcHHHHHHHHHhh
Confidence 48887772 222 2223333 37899999999875
No 221
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=94.86 E-value=0.14 Score=33.03 Aligned_cols=58 Identities=21% Similarity=0.264 Sum_probs=48.7
Q ss_pred EEEEEECCCChhhHhhHHHHHHHHHhCCC--eEEEEEECCCCchhHHHHCCCCcccEEEEE
Q psy5680 77 VLAYFFKPSCGFCKQLEPKISTVSETTSG--VEFVKINVENGGGEIAREFEVQAVPTVIGF 135 (201)
Q Consensus 77 vvv~f~a~wC~~C~~~~~~l~~l~~~~~~--~~~~~vd~~~~~~~l~~~~~v~~~Pti~~~ 135 (201)
.+..|-+..-+........+.++.+.+.+ +.+=-+|+.++ |.+++.++|-.+||++-.
T Consensus 3 ~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~~-P~lAe~~~ivAtPtLvk~ 62 (72)
T cd02978 3 VLRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLKQ-PQLAEEDKIVATPTLVKV 62 (72)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEcccC-HhHHhhCCEEEechhhhc
Confidence 45566677778888888889888877644 89999999999 999999999999997654
No 222
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear
Probab=94.85 E-value=1.1 Score=32.72 Aligned_cols=91 Identities=10% Similarity=0.206 Sum_probs=63.7
Q ss_pred hCCCcEEEEEECCCChhhHhhHHHH---HHHHHhCCC-eEEEEEECCCCc-----------------hhHHHHCCCCccc
Q psy5680 72 RGRNPVLAYFFKPSCGFCKQLEPKI---STVSETTSG-VEFVKINVENGG-----------------GEIAREFEVQAVP 130 (201)
Q Consensus 72 ~~~~~vvv~f~a~wC~~C~~~~~~l---~~l~~~~~~-~~~~~vd~~~~~-----------------~~l~~~~~v~~~P 130 (201)
.+.|+.+|+..++.-..+..+...+ +.+.+-+.+ +.+..-|+...+ ....+.++...+|
T Consensus 19 ~e~K~L~VYLH~~~~~~t~~Fc~~~L~se~Vi~fl~~nfv~Wg~dvt~~~~~~~fl~~~~~~~g~~a~~~~~~~~~~~fP 98 (136)
T cd02990 19 RDRKLLAIYLHHDESVLSNVFCSQLLCAESIVQYLSQNFITWGWDMTKESNKARFLSSCTRHFGSVAAQTIRNIKTDQLP 98 (136)
T ss_pred hhcceEEEEEcCCCCccHHHHHHHHhcCHHHHHHHHcCEEEEeeeccchhhhhHHHHhhhhhhhHHHHHHHHhcCcCCCC
Confidence 5689999999999875554444433 333333334 777788877641 1234567899999
Q ss_pred EEEEEe-CC---eEEEEEeCCCCHHHHHHHHHHHHh
Q psy5680 131 TVIGFR-NG---DPVDMVVGNADQDVIQTLVSKLSQ 162 (201)
Q Consensus 131 ti~~~~-~G---~~v~~~~G~~~~~~l~~~i~~~~~ 162 (201)
.+.++- .. .++.+..|..+.+++...|...++
T Consensus 99 ~~avI~~~~~~~~vl~~i~G~~~~~ell~~L~~~ve 134 (136)
T cd02990 99 AILIIMGKRSSNEVLNVIQGNTGVDELLMRLIEAME 134 (136)
T ss_pred eEEEEEecCCceEEEEEEECCCCHHHHHHHHHHHHh
Confidence 988882 22 467799999999999999988764
No 223
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=94.62 E-value=0.48 Score=30.49 Aligned_cols=72 Identities=13% Similarity=0.212 Sum_probs=42.5
Q ss_pred EEEEECCCChhhHhhHHHHHHHHHhCCCeEEEEEECCCC---chhHHHHCCCCcccEEEEEeCCeEEEEEeCCCCHHHHH
Q psy5680 78 LAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENG---GGEIAREFEVQAVPTVIGFRNGDPVDMVVGNADQDVIQ 154 (201)
Q Consensus 78 vv~f~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~---~~~l~~~~~v~~~Pti~~~~~G~~v~~~~G~~~~~~l~ 154 (201)
+..|+.++|+.|++..-.+.+. ++.+-.++++.. .+++.+..+...+|+++.-.+|..+ .+...|.
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~-----gi~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~~~~~~~l------~es~~I~ 70 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTEL-----ELDVILYPCPKGSPKRDKFLEKGGKVQVPYLVDPNTGVQM------FESADIV 70 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHc-----CCcEEEEECCCChHHHHHHHHhCCCCcccEEEeCCCCeEE------EcHHHHH
Confidence 4567889999999988777664 433333455432 1334444455678988542234222 4456777
Q ss_pred HHHHHH
Q psy5680 155 TLVSKL 160 (201)
Q Consensus 155 ~~i~~~ 160 (201)
++|++.
T Consensus 71 ~yL~~~ 76 (77)
T cd03041 71 KYLFKT 76 (77)
T ss_pred HHHHHh
Confidence 777653
No 224
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=94.51 E-value=0.14 Score=32.32 Aligned_cols=58 Identities=16% Similarity=0.232 Sum_probs=38.0
Q ss_pred EEEECCCChhhHhhHHHHHHHHHhCCCeEEEEEECCCCchhHHHHCCCCcccEEEEEeCCeE
Q psy5680 79 AYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTVIGFRNGDP 140 (201)
Q Consensus 79 v~f~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~l~~~~~v~~~Pti~~~~~G~~ 140 (201)
+.|+.+||+.|++..-.+++..- .+.+..+|.....+++.+......+|++.. .+|..
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl---~~e~~~v~~~~~~~~~~~~np~~~vP~L~~-~~g~~ 59 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGI---TVELREVELKNKPAEMLAASPKGTVPVLVL-GNGTV 59 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCC---CcEEEEeCCCCCCHHHHHHCCCCCCCEEEE-CCCcE
Confidence 46789999999998766665421 156666665443145666666778999854 23544
No 225
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=94.45 E-value=0.29 Score=30.82 Aligned_cols=69 Identities=16% Similarity=0.268 Sum_probs=38.2
Q ss_pred EEEECCCChhhHhhHHHHHHHHHhCCCeEEEEEECCCCchhHHHHCCCCcccEEEEEeCCeEEEEEeCCCCHHHHHHHHH
Q psy5680 79 AYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTVIGFRNGDPVDMVVGNADQDVIQTLVS 158 (201)
Q Consensus 79 v~f~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~l~~~~~v~~~Pti~~~~~G~~v~~~~G~~~~~~l~~~i~ 158 (201)
..|+.++|++|++.+-.+....-. +....++.... ....+..+-..+|++.. .+|..+ .+...+.++|+
T Consensus 2 ~Ly~~~~~p~~~rvr~~L~~~gl~---~~~~~~~~~~~-~~~~~~~~~~~vP~L~~-~~~~~l------~es~aI~~yL~ 70 (71)
T cd03037 2 KLYIYEHCPFCVKARMIAGLKNIP---VEQIILQNDDE-ATPIRMIGAKQVPILEK-DDGSFM------AESLDIVAFID 70 (71)
T ss_pred ceEecCCCcHhHHHHHHHHHcCCC---eEEEECCCCch-HHHHHhcCCCccCEEEe-CCCeEe------ehHHHHHHHHh
Confidence 357889999999888666653111 34444444333 33334445567888743 335332 33455555543
No 226
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=94.38 E-value=0.67 Score=29.58 Aligned_cols=72 Identities=18% Similarity=0.332 Sum_probs=42.9
Q ss_pred EEEEECCCChhhHhhHHHHHHHHHhCCCeEEEEEECCCC-chhHHHHCCCCcccEEEEEe--CCeEEEEEeCCCCHHHHH
Q psy5680 78 LAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENG-GGEIAREFEVQAVPTVIGFR--NGDPVDMVVGNADQDVIQ 154 (201)
Q Consensus 78 vv~f~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~-~~~l~~~~~v~~~Pti~~~~--~G~~v~~~~G~~~~~~l~ 154 (201)
+..|+.++|+.|++.+-.+.+. ++.+-.++++.. ..++ ..-+...+|++..-. +|..+ .+...+.
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~~-----gi~y~~~~~~~~~~~~~-~~~~~~~vP~l~~~~~~~~~~l------~eS~~I~ 69 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDYH-----GIPYEVVEVNPVSRKEI-KWSSYKKVPILRVESGGDGQQL------VDSSVII 69 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHHC-----CCceEEEECCchhHHHH-HHhCCCccCEEEECCCCCccEE------EcHHHHH
Confidence 4578889999999988666653 433333344321 0233 344556799887542 23322 3557777
Q ss_pred HHHHHHH
Q psy5680 155 TLVSKLS 161 (201)
Q Consensus 155 ~~i~~~~ 161 (201)
++|++.+
T Consensus 70 ~yL~~~~ 76 (77)
T cd03040 70 STLKTYL 76 (77)
T ss_pred HHHHHHc
Confidence 7777654
No 227
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=94.38 E-value=1.8 Score=38.49 Aligned_cols=91 Identities=13% Similarity=0.045 Sum_probs=66.5
Q ss_pred HhHHHHHH-hCCCcEEEEEECCCChhhHhhHHHHHHHHHhCCCeEEEEEECCCCchhHHHHCCCCcccEEEEEeCCeEE-
Q psy5680 64 IDDFKQTI-RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTVIGFRNGDPV- 141 (201)
Q Consensus 64 ~~~~~~~~-~~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~l~~~~~v~~~Pti~~~~~G~~v- 141 (201)
.+++...+ .-.++|-+.++.+.|+.|..+...++++++.-+.+.+-..+ . . ...|++.+..+|+..
T Consensus 7 ~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~~---~-~--------~~~p~~~~~~~~~~~~ 74 (517)
T PRK15317 7 KTQLKQYLELLERPIELVASLDDSEKSAELKELLEEIASLSDKITVEEDS---L-D--------VRKPSFSITRPGEDTG 74 (517)
T ss_pred HHHHHHHHHhCCCCEEEEEEeCCCchHHHHHHHHHHHHHhCCceEEEEcc---C-C--------CCCCEEEEEcCCccce
Confidence 34555555 55677777777778999999999999998877656553311 2 1 347999888777554
Q ss_pred EEEeCCCCHHHHHHHHHHHHhhhhh
Q psy5680 142 DMVVGNADQDVIQTLVSKLSQKLAT 166 (201)
Q Consensus 142 ~~~~G~~~~~~l~~~i~~~~~~~~~ 166 (201)
.+|.|...-.+|..||...+.-...
T Consensus 75 i~f~g~P~g~Ef~s~i~~i~~~~~~ 99 (517)
T PRK15317 75 VRFAGIPMGHEFTSLVLALLQVGGH 99 (517)
T ss_pred EEEEecCccHHHHHHHHHHHHhcCC
Confidence 4899999999999999998765433
No 228
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=94.08 E-value=1.2 Score=30.20 Aligned_cols=83 Identities=19% Similarity=0.165 Sum_probs=55.7
Q ss_pred hHHHHHH-hCCCcEEE-EEECCCChhhHhhHHHHHHHHHhCCCeEEEEEECCCCchhHHHHCCCCcccEEEEEeCCeEE-
Q psy5680 65 DDFKQTI-RGRNPVLA-YFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTVIGFRNGDPV- 141 (201)
Q Consensus 65 ~~~~~~~-~~~~~vvv-~f~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~l~~~~~v~~~Pti~~~~~G~~v- 141 (201)
+++...+ .-.++|.+ .|..+. ..|..+...+++++..-+.+.+-..+. . + ..|++.+..+|+..
T Consensus 8 ~qL~~~f~~l~~pV~l~~f~~~~-~~~~e~~~ll~e~a~lSdkI~~~~~~~--~--~--------~~P~~~i~~~~~~~g 74 (94)
T cd02974 8 QQLKAYLERLENPVELVASLDDS-EKSAELLELLEEIASLSDKITLEEDND--D--E--------RKPSFSINRPGEDTG 74 (94)
T ss_pred HHHHHHHHhCCCCEEEEEEeCCC-cchHHHHHHHHHHHHhCCceEEEEecC--C--C--------CCCEEEEecCCCccc
Confidence 4445555 44556655 555545 999999999999987776555532221 1 1 46999998776432
Q ss_pred EEEeCCCCHHHHHHHHHHH
Q psy5680 142 DMVVGNADQDVIQTLVSKL 160 (201)
Q Consensus 142 ~~~~G~~~~~~l~~~i~~~ 160 (201)
.+|.|...-.++..+|...
T Consensus 75 IrF~GiP~GhEf~Slilai 93 (94)
T cd02974 75 IRFAGIPMGHEFTSLVLAL 93 (94)
T ss_pred EEEEecCCchhHHHHHHHh
Confidence 4899988888888887653
No 229
>KOG2640|consensus
Probab=93.69 E-value=0.024 Score=46.44 Aligned_cols=89 Identities=11% Similarity=0.257 Sum_probs=68.9
Q ss_pred hCCCcEEEEEECCCChhhHhhHHHHHHHHHhCCCeEEEEEE-CCCCchhHHHHCCCCcccEEEEEeCCeEEEEEeCCCCH
Q psy5680 72 RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKIN-VENGGGEIAREFEVQAVPTVIGFRNGDPVDMVVGNADQ 150 (201)
Q Consensus 72 ~~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vd-~~~~~~~l~~~~~v~~~Pti~~~~~G~~v~~~~G~~~~ 150 (201)
++..++-..||+.|||..+..++.+.-....|+.+....++ .-.- +....+|++.+.|++.+... .-..++.|..+.
T Consensus 74 n~~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~i~h~~vee~~~l-psv~s~~~~~~~ps~~~~n~-t~~~~~~~~r~l 151 (319)
T KOG2640|consen 74 NKNDYVSLLFYASWCPFSRAVRPEFDVRSSLFSSIQHFAVEESQAL-PSVFSSYGIHSEPSNLMLNQ-TCPASYRGERDL 151 (319)
T ss_pred ccCCcccccchhcccCcccccCcccchhhhhccccccccHHHHhhc-ccchhccccccCCcceeecc-ccchhhcccccH
Confidence 44788999999999999999999998888888753333333 1122 67788999999999988743 233478898999
Q ss_pred HHHHHHHHHHHh
Q psy5680 151 DVIQTLVSKLSQ 162 (201)
Q Consensus 151 ~~l~~~i~~~~~ 162 (201)
..++++..+...
T Consensus 152 ~sLv~fy~~i~~ 163 (319)
T KOG2640|consen 152 ASLVNFYTEITP 163 (319)
T ss_pred HHHHHHHHhhcc
Confidence 999999888774
No 230
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=93.65 E-value=1.2 Score=34.63 Aligned_cols=81 Identities=22% Similarity=0.418 Sum_probs=54.7
Q ss_pred EEEEEECCCChhhHhhHHHHHHHHHhCCCeEEEEEECCCCc-----------------hhHHHHCCCCcc--cEEEEEeC
Q psy5680 77 VLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGG-----------------GEIAREFEVQAV--PTVIGFRN 137 (201)
Q Consensus 77 vvv~f~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~-----------------~~l~~~~~v~~~--Pti~~~~~ 137 (201)
||=+|++..|+.|-.....|.+++++- ++..+..-+|..+ +...++++...+ |.+++ +
T Consensus 1 vVELFTSQGCsSCPpAD~~L~~l~~~~-~Vi~LafHVDYWDylGWkD~fa~~~~t~RQr~Y~~~~~~~~vYTPQ~vV--n 77 (202)
T PF06764_consen 1 VVELFTSQGCSSCPPADRLLSELAARP-DVIALAFHVDYWDYLGWKDPFASPEFTQRQRAYARRFGLRSVYTPQVVV--N 77 (202)
T ss_dssp EEEEEE-TT-TT-HHHHHHHHHHHHHT-SSEEEEEE-STT-SSSS--TT--HHHHHHHHHHHHHTT-S---SSEEEE--T
T ss_pred CeeEecCCCCCCCcHHHHHHHHhhcCC-CEEEEEecCCcccCCCCCCccCChhHHHHHHHHHHHhCCCCCcCCeEEE--C
Confidence 455799999999999999999999884 7666666666441 345567776664 66666 7
Q ss_pred CeEEEEEeCCCCHHHHHHHHHHHHhh
Q psy5680 138 GDPVDMVVGNADQDVIQTLVSKLSQK 163 (201)
Q Consensus 138 G~~v~~~~G~~~~~~l~~~i~~~~~~ 163 (201)
|.. ...| .+...+...|.++...
T Consensus 78 G~~--~~~g-~~~~~~~~ai~~~~~~ 100 (202)
T PF06764_consen 78 GRE--HRVG-SDRAAVEAAIQAARAR 100 (202)
T ss_dssp TTE--EEET-T-HHHHHHHHHHHHHT
T ss_pred Cee--eeec-cCHHHHHHHHHHhhcc
Confidence 865 4566 8889999999998766
No 231
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=93.52 E-value=0.72 Score=28.92 Aligned_cols=70 Identities=13% Similarity=0.255 Sum_probs=42.1
Q ss_pred EEEECCCChhhHhhHHHHHHHHHhCCCeEEEEEECCCCchhHHHHCCCCcccEEEEEeCCeEEEEEeCCCCHHHHHHHHH
Q psy5680 79 AYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTVIGFRNGDPVDMVVGNADQDVIQTLVS 158 (201)
Q Consensus 79 v~f~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~l~~~~~v~~~Pti~~~~~G~~v~~~~G~~~~~~l~~~i~ 158 (201)
..|+.++|+.|++..-.++...-. +....+|.....+++.+......+|++. .+|..+ .+...+..+|+
T Consensus 2 ~ly~~~~~~~~~~v~~~l~~~gi~---~~~~~v~~~~~~~~~~~~~p~~~vP~l~--~~~~~l------~es~aI~~yL~ 70 (73)
T cd03059 2 TLYSGPDDVYSHRVRIVLAEKGVS---VEIIDVDPDNPPEDLAELNPYGTVPTLV--DRDLVL------YESRIIMEYLD 70 (73)
T ss_pred EEEECCCChhHHHHHHHHHHcCCc---cEEEEcCCCCCCHHHHhhCCCCCCCEEE--ECCEEE------EcHHHHHHHHH
Confidence 568899999999988766554221 4444555544324555555667899774 344322 34456666665
Q ss_pred H
Q psy5680 159 K 159 (201)
Q Consensus 159 ~ 159 (201)
+
T Consensus 71 ~ 71 (73)
T cd03059 71 E 71 (73)
T ss_pred h
Confidence 4
No 232
>PRK09301 circadian clock protein KaiB; Provisional
Probab=93.29 E-value=0.44 Score=32.85 Aligned_cols=80 Identities=19% Similarity=0.300 Sum_probs=61.7
Q ss_pred CCCcEEEEEECCCChhhHhhHHHHHHHHHhC-CC-eEEEEEECCCCchhHHHHCCCCcccEEEEEeCCeEEEEEeCCC-C
Q psy5680 73 GRNPVLAYFFKPSCGFCKQLEPKISTVSETT-SG-VEFVKINVENGGGEIAREFEVQAVPTVIGFRNGDPVDMVVGNA-D 149 (201)
Q Consensus 73 ~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~-~~-~~~~~vd~~~~~~~l~~~~~v~~~Pti~~~~~G~~v~~~~G~~-~ 149 (201)
+...++=.|.+..-+..+.....+.++.+.+ ++ +.+=-||+.++ |.+++.++|-.+||++-.-. ....++.|.+ +
T Consensus 4 ~~~~~LrLyVag~tp~S~~ai~nL~~icE~~l~g~y~LeVIDv~~q-PelAE~~~IvATPTLIK~~P-~P~rriiGDlsd 81 (103)
T PRK09301 4 RKTYILKLYVAGNTPNSVRALKTLKNILETEFKGVYALKVIDVLKN-PQLAEEDKILATPTLAKILP-PPVRKIIGDLSD 81 (103)
T ss_pred CceEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccC-HhHHhHCCeEEecHHhhcCC-CCcceeeccccc
Confidence 3456777888999999999999998887654 45 88889999999 99999999999999766533 2445777765 3
Q ss_pred HHHHH
Q psy5680 150 QDVIQ 154 (201)
Q Consensus 150 ~~~l~ 154 (201)
.+.+.
T Consensus 82 ~~kVL 86 (103)
T PRK09301 82 REKVL 86 (103)
T ss_pred HHHHH
Confidence 34443
No 233
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=93.26 E-value=0.47 Score=31.71 Aligned_cols=73 Identities=21% Similarity=0.276 Sum_probs=57.3
Q ss_pred CcEEEEEECCCChhhHhhHHHHHHHHHhC-CC-eEEEEEECCCCchhHHHHCCCCcccEEEEEeCCeEEEEEeCCCC
Q psy5680 75 NPVLAYFFKPSCGFCKQLEPKISTVSETT-SG-VEFVKINVENGGGEIAREFEVQAVPTVIGFRNGDPVDMVVGNAD 149 (201)
Q Consensus 75 ~~vvv~f~a~wC~~C~~~~~~l~~l~~~~-~~-~~~~~vd~~~~~~~l~~~~~v~~~Pti~~~~~G~~v~~~~G~~~ 149 (201)
..++=.|.+..-+.+......+.++.+.+ ++ +.+=-||+.++ |.+++.++|-.+||++-.-.+ ...++.|.++
T Consensus 3 ~~~LrLyvag~~p~S~~ai~nl~~i~e~~l~g~y~LeVIDv~~q-P~lAE~~~IvATPtLIK~~P~-P~rriiGdls 77 (87)
T TIGR02654 3 TYVLKLYVAGNTPNSVRALKTLKNILETEFQGVYALKVIDVLKN-PQLAEEDKILATPTLSKILPP-PVRKIIGDLS 77 (87)
T ss_pred eEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccC-HhHHhHCCEEEecHHhhcCCC-Ccceeecccc
Confidence 45666788888889999888888887654 45 88889999999 999999999999997665332 4456777653
No 234
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=93.21 E-value=1.5 Score=34.20 Aligned_cols=100 Identities=18% Similarity=0.221 Sum_probs=65.2
Q ss_pred CHhHHHHHHhCCCcEEEEEECCCCh-hhHhhHHHHHHHHHhCC---C--eEEEEEECCCC--c-----------------
Q psy5680 63 KIDDFKQTIRGRNPVLAYFFKPSCG-FCKQLEPKISTVSETTS---G--VEFVKINVENG--G----------------- 117 (201)
Q Consensus 63 ~~~~~~~~~~~~~~vvv~f~a~wC~-~C~~~~~~l~~l~~~~~---~--~~~~~vd~~~~--~----------------- 117 (201)
+++.|...--++++++|.|.=+.|| -|-.....+..+.++.. + +.++-|-+|.. +
T Consensus 56 ~G~~~~~~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~~~~~~~~~ 135 (207)
T COG1999 56 DGKPFTLKDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAELNFDPRWI 135 (207)
T ss_pred CCCEeeccccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhcccCCCCee
Confidence 4444443333899999999999994 68888888888777765 1 65665555543 1
Q ss_pred ---------hhHHHHCCCCc---------------ccEEEEE-eCCeEEEEEeCCCCHHHHHHHHHHHHh
Q psy5680 118 ---------GEIAREFEVQA---------------VPTVIGF-RNGDPVDMVVGNADQDVIQTLVSKLSQ 162 (201)
Q Consensus 118 ---------~~l~~~~~v~~---------------~Pti~~~-~~G~~v~~~~G~~~~~~l~~~i~~~~~ 162 (201)
.+++++|+|.. -..++++ .+|+....+.+..+.+++.+.|++.++
T Consensus 136 ~ltg~~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~~~~~~~~~~i~~~l~~l~~ 205 (207)
T COG1999 136 GLTGTPEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGTYDYGEPPEEIAADLKKLLK 205 (207)
T ss_pred eeeCCHHHHHHHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEEEecCCCChHHHHHHHHHHhh
Confidence 34455555542 1223333 578777777776778888888877664
No 235
>PHA03075 glutaredoxin-like protein; Provisional
Probab=93.19 E-value=0.17 Score=35.48 Aligned_cols=30 Identities=20% Similarity=0.522 Sum_probs=26.9
Q ss_pred CcEEEEEECCCChhhHhhHHHHHHHHHhCC
Q psy5680 75 NPVLAYFFKPSCGFCKQLEPKISTVSETTS 104 (201)
Q Consensus 75 ~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~ 104 (201)
+.+++.|.-|.|+-|......++++..+|.
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY~ 31 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEYD 31 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhcccc
Confidence 568999999999999999999988888774
No 236
>KOG2507|consensus
Probab=93.19 E-value=1.3 Score=38.17 Aligned_cols=91 Identities=14% Similarity=0.279 Sum_probs=62.2
Q ss_pred hCCCcEEEEEECCCChhhHhhHH-HH-HHH-HHhCCC-eEEEEEECCCC-chhHHHHCCCCcccEEEEE-eCCeEEEEEe
Q psy5680 72 RGRNPVLAYFFKPSCGFCKQLEP-KI-STV-SETTSG-VEFVKINVENG-GGEIAREFEVQAVPTVIGF-RNGDPVDMVV 145 (201)
Q Consensus 72 ~~~~~vvv~f~a~wC~~C~~~~~-~l-~~l-~~~~~~-~~~~~vd~~~~-~~~l~~~~~v~~~Pti~~~-~~G~~v~~~~ 145 (201)
..++.++|.|-+.......++.. .| ... .+..-. +..++|+.... -..+..-|.+-.+|.++++ ..|..+....
T Consensus 16 K~kkalfVVyI~gddE~s~kl~r~~w~d~~vs~~ls~~fVaIkiqags~aa~qFs~IYp~v~vPs~ffIg~sGtpLevit 95 (506)
T KOG2507|consen 16 KGKKALFVVYISGDDEESDKLNRLTWTDASVSDSLSKYFVAIKIQAGSVAATQFSAIYPYVSVPSIFFIGFSGTPLEVIT 95 (506)
T ss_pred hcCCeEEEEEEecCchHhhHHhhccchhhhhhhhhhcceEEEEeccCchhhhhhhhhcccccccceeeecCCCceeEEee
Confidence 56677888888877777776662 22 222 222222 44444444332 0345566778889999999 8899999999
Q ss_pred CCCCHHHHHHHHHHHHh
Q psy5680 146 GNADQDVIQTLVSKLSQ 162 (201)
Q Consensus 146 G~~~~~~l~~~i~~~~~ 162 (201)
|....++|..-|.+...
T Consensus 96 g~v~adeL~~~i~Kv~~ 112 (506)
T KOG2507|consen 96 GFVTADELASSIEKVWL 112 (506)
T ss_pred ccccHHHHHHHHHHHHH
Confidence 99999999999988754
No 237
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=93.12 E-value=0.14 Score=35.32 Aligned_cols=78 Identities=13% Similarity=0.227 Sum_probs=43.2
Q ss_pred EEEEECCCChhhHhhHHHHHHHHHhCCCeEEEEEECCCC--c-hhHHHHCCCCcccEEEEE-eCCeEEE---EE-eCCCC
Q psy5680 78 LAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENG--G-GEIAREFEVQAVPTVIGF-RNGDPVD---MV-VGNAD 149 (201)
Q Consensus 78 vv~f~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~--~-~~l~~~~~v~~~Pti~~~-~~G~~v~---~~-~G~~~ 149 (201)
+..|+.++|+.|++....+++. ++.|-.+|+.+. + .++.+-++-.+.+.--++ ++|.... .. ...++
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~-----~i~~~~idi~~~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~l~~~~~~~ls 75 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEH-----GIEYEFIDYLKEPPTKEELKELLAKLGLGVEDLFNTRGTPYRKLGLADKDELS 75 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHc-----CCCcEEEeeccCCCCHHHHHHHHHhcCCCHHHHHhcCCchHHHcCCccccCCC
Confidence 3579999999999998777763 566667777654 0 123333333333333333 2222111 11 23367
Q ss_pred HHHHHHHHHHH
Q psy5680 150 QDVIQTLVSKL 160 (201)
Q Consensus 150 ~~~l~~~i~~~ 160 (201)
.+++.++|.+.
T Consensus 76 ~~e~~~~l~~~ 86 (105)
T cd02977 76 DEEALELMAEH 86 (105)
T ss_pred HHHHHHHHHhC
Confidence 77777777664
No 238
>PF06491 Disulph_isomer: Disulphide isomerase; InterPro: IPR009474 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 3FHK_F.
Probab=92.96 E-value=2.5 Score=30.40 Aligned_cols=104 Identities=13% Similarity=0.286 Sum_probs=54.7
Q ss_pred EEEeCCHhHHHHHHh-CCCcEEEEEECCCChhh-HhhHHHHHH-HH-HhCCC-eEEEEEECCCCchhHHHHCC---CCcc
Q psy5680 58 YLIIEKIDDFKQTIR-GRNPVLAYFFKPSCGFC-KQLEPKIST-VS-ETTSG-VEFVKINVENGGGEIAREFE---VQAV 129 (201)
Q Consensus 58 v~~l~~~~~~~~~~~-~~~~vvv~f~a~wC~~C-~~~~~~l~~-l~-~~~~~-~~~~~vd~~~~~~~l~~~~~---v~~~ 129 (201)
+.+++|.++.++.+. +.+.++|..-+ -||=- -..+|.... +. .+-|+ +.-+-.-.|+...+-++.|- .-+-
T Consensus 18 f~eL~T~e~Vd~~~~~~~GTtlVvVNS-VCGCAag~ARPa~~~al~~~kkPD~lvTVFAGqDkEAt~~aR~yf~~~pPSS 96 (136)
T PF06491_consen 18 FEELTTAEEVDEALKNKEGTTLVVVNS-VCGCAAGNARPAAAMALQNDKKPDHLVTVFAGQDKEATAKAREYFEPYPPSS 96 (136)
T ss_dssp -EE--SHHHHHHHHHH--SEEEEEEE--SSHHHHHTHHHHHHHHHHHSS--SEEEEEETTTSHHHHHHHHHTSTTS---S
T ss_pred ccccCCHHHHHHHHhCCCCcEEEEEec-cccccccccCHHHHHHHhCCCCCCceEEeccCCCHHHHHHHHHhcCCCCCCC
Confidence 899999999999994 77777776654 45311 234554432 22 23344 22222222222123344443 2356
Q ss_pred cEEEEEeCCeEEEEE-----eCCCCHHHHHHHHHHHHhh
Q psy5680 130 PTVIGFRNGDPVDMV-----VGNADQDVIQTLVSKLSQK 163 (201)
Q Consensus 130 Pti~~~~~G~~v~~~-----~G~~~~~~l~~~i~~~~~~ 163 (201)
|++.+|++|+.++.+ .| .+.+.+..-|..+.+.
T Consensus 97 PS~ALfKdGelvh~ieRh~IEG-r~a~~Ia~~L~~af~~ 134 (136)
T PF06491_consen 97 PSIALFKDGELVHFIERHHIEG-RPAEEIAENLQDAFDE 134 (136)
T ss_dssp SEEEEEETTEEEEEE-GGGTTT-S-HHHHHHHHHHHHHH
T ss_pred chheeeeCCEEEEEeehhhcCC-CCHHHHHHHHHHHHHh
Confidence 899999999998743 35 7888888888776643
No 239
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=92.70 E-value=0.3 Score=35.29 Aligned_cols=43 Identities=21% Similarity=0.340 Sum_probs=35.0
Q ss_pred hhHHHHCCCCcccEEEEEeCCe-----------EEEEEeCCCCHHHHHHHHHHH
Q psy5680 118 GEIAREFEVQAVPTVIGFRNGD-----------PVDMVVGNADQDVIQTLVSKL 160 (201)
Q Consensus 118 ~~l~~~~~v~~~Pti~~~~~G~-----------~v~~~~G~~~~~~l~~~i~~~ 160 (201)
|.+.++|+|+.+|++++.+++. ......|..+.++-++.+.+.
T Consensus 61 P~lF~~f~I~~VPa~V~~~~~~~c~~~~~~~~~~~d~v~Gdvsl~~ALe~ia~~ 114 (130)
T TIGR02742 61 PQWFKQFDITAVPAFVVVKDGLACLPEQPCPESDYDVVYGNVSLKGALEKMAQD 114 (130)
T ss_pred hHHHhhcCceEcCEEEEECCCCcccccCCCCCCCeeEEEecccHHHHHHHHHHh
Confidence 8899999999999999998764 245778888888777777644
No 240
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=92.62 E-value=0.62 Score=39.43 Aligned_cols=90 Identities=18% Similarity=0.234 Sum_probs=70.5
Q ss_pred hHHHHHH-hCCCcEEEEEECCCChhhHhhHHHHHHHHHhCCCeEEEEEECCCCchhHHHHCCCCcccEEEEEeCCeEEEE
Q psy5680 65 DDFKQTI-RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTVIGFRNGDPVDM 143 (201)
Q Consensus 65 ~~~~~~~-~~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~l~~~~~v~~~Pti~~~~~G~~v~~ 143 (201)
+-++++- -++...+=-|++-.|..|-.....++-.+-..|++.-..||-.-. .+-.+.-+|.++||+++ +|+. .
T Consensus 106 ~vieqik~i~g~~~FETy~SltC~nCPDVVQALN~msvlNp~I~H~~IdGa~F-q~Evear~IMaVPtvfl--nGe~--f 180 (520)
T COG3634 106 DVIEQIKAIDGDFHFETYFSLTCHNCPDVVQALNLMSVLNPRIKHTAIDGALF-QDEVEARNIMAVPTVFL--NGEE--F 180 (520)
T ss_pred HHHHHHHhcCCceeEEEEEEeeccCChHHHHHHHHHHhcCCCceeEEecchhh-HhHHHhccceecceEEE--cchh--h
Confidence 3344433 467778999999999999999999999988888899889997766 66677788999999877 6765 3
Q ss_pred EeCCCCHHHHHHHHHH
Q psy5680 144 VVGNADQDVIQTLVSK 159 (201)
Q Consensus 144 ~~G~~~~~~l~~~i~~ 159 (201)
-.|.++.+++...|..
T Consensus 181 g~GRmtleeilaki~~ 196 (520)
T COG3634 181 GQGRMTLEEILAKIDT 196 (520)
T ss_pred cccceeHHHHHHHhcC
Confidence 4677788887777655
No 241
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.17 E-value=0.81 Score=31.35 Aligned_cols=73 Identities=27% Similarity=0.394 Sum_probs=48.9
Q ss_pred HhHHHHHHhCCCcEEEEEECC---CChhhHhhHHHHHHHHHhCCCeEEEEEECCCCchhHHHHCCC-CcccEE-EEEeCC
Q psy5680 64 IDDFKQTIRGRNPVLAYFFKP---SCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEV-QAVPTV-IGFRNG 138 (201)
Q Consensus 64 ~~~~~~~~~~~~~vvv~f~a~---wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~l~~~~~v-~~~Pti-~~~~~G 138 (201)
.+.+++.+..+..++.+=.+| -|+...+....+... +-+.|..+|+-.+ +++.+.+.- ..+||+ -+|-+|
T Consensus 5 ~~~I~~~i~~n~VvLFMKGtp~~P~CGFS~~~vqiL~~~----g~v~~~~vnVL~d-~eiR~~lk~~s~WPT~PQLyi~G 79 (105)
T COG0278 5 LDRIQKQIKENPVVLFMKGTPEFPQCGFSAQAVQILSAC----GVVDFAYVDVLQD-PEIRQGLKEYSNWPTFPQLYVNG 79 (105)
T ss_pred HHHHHHHhhcCceEEEecCCCCCCCCCccHHHHHHHHHc----CCcceeEEeeccC-HHHHhccHhhcCCCCCceeeECC
Confidence 456677776666666666655 466666665555443 2278999999999 888776654 457885 566688
Q ss_pred eEE
Q psy5680 139 DPV 141 (201)
Q Consensus 139 ~~v 141 (201)
+-+
T Consensus 80 Efv 82 (105)
T COG0278 80 EFV 82 (105)
T ss_pred EEe
Confidence 554
No 242
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=91.59 E-value=0.32 Score=33.97 Aligned_cols=34 Identities=21% Similarity=0.635 Sum_probs=26.3
Q ss_pred EEEEECCCChhhHhhHHHHHHHHHhCCCeEEEEEECCCC
Q psy5680 78 LAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENG 116 (201)
Q Consensus 78 vv~f~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~ 116 (201)
+..|+.++|+.|++....|++ .++.|-.+|+.+.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~-----~~i~~~~idi~~~ 34 (111)
T cd03036 1 LKFYEYPKCSTCRKAKKWLDE-----HGVDYTAIDIVEE 34 (111)
T ss_pred CEEEECCCCHHHHHHHHHHHH-----cCCceEEecccCC
Confidence 357899999999999877776 3567777777655
No 243
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=91.48 E-value=0.43 Score=34.45 Aligned_cols=34 Identities=21% Similarity=0.500 Sum_probs=26.0
Q ss_pred EEEEECCCChhhHhhHHHHHHHHHhCCCeEEEEEECCCC
Q psy5680 78 LAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENG 116 (201)
Q Consensus 78 vv~f~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~ 116 (201)
+..|+.++|+.|++....|++- ++.+-.+|+.+.
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~-----gi~~~~idi~~~ 35 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEH-----DIPFTERNIFSS 35 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc-----CCCcEEeeccCC
Confidence 5688999999999988777663 566667777655
No 244
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=91.16 E-value=3.9 Score=28.67 Aligned_cols=84 Identities=17% Similarity=0.295 Sum_probs=46.9
Q ss_pred HhHHHHHH---hCCCcEEEEEECCCChhhHhhHHHHHHHHHhCCC---eEEEEEECCCCchhHHHHCCCCcccEEEEEeC
Q psy5680 64 IDDFKQTI---RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG---VEFVKINVENGGGEIAREFEVQAVPTVIGFRN 137 (201)
Q Consensus 64 ~~~~~~~~---~~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~---~~~~~vd~~~~~~~l~~~~~v~~~Pti~~~~~ 137 (201)
.+.+.+++ .+.+.++|+=.-..- .+.+.+..+.+.... ..=+.|| |.+.++|+|+.+|++++.++
T Consensus 10 ~~~L~~l~~~a~~~~~~~V~RG~~~g----~~~~t~~~~~~l~~~~~~~~~v~Id-----P~~F~~y~I~~VPa~V~~~~ 80 (113)
T PF09673_consen 10 DASLRNLLKQAERAGVVVVFRGFPDG----SFKPTAKAIQELLRKDDPCPGVQID-----PRLFRQYNITAVPAFVVVKD 80 (113)
T ss_pred HHHHHHHHHHHHhCCcEEEEECCCCC----CHHHHHHHHHHHhhccCCCcceeEC-----hhHHhhCCceEcCEEEEEcC
Confidence 34444444 233444444333332 556655555444432 2122333 78999999999999999976
Q ss_pred C------------eEEEEEeCCCCHHHHHHH
Q psy5680 138 G------------DPVDMVVGNADQDVIQTL 156 (201)
Q Consensus 138 G------------~~v~~~~G~~~~~~l~~~ 156 (201)
+ .......|..+...-++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~Gdvsl~~aLe~ 111 (113)
T PF09673_consen 81 RVCVCLSCGCCSPEDYDVVYGDVSLDYALEK 111 (113)
T ss_pred cccccccCCcCCCCcceEEEccccHHHHHHh
Confidence 1 223456676666555443
No 245
>KOG2792|consensus
Probab=91.15 E-value=1.4 Score=35.48 Aligned_cols=96 Identities=23% Similarity=0.323 Sum_probs=63.1
Q ss_pred CHhHHHHHHhCCCcEEEEEECCCChh-hHhhHHHHHHHHHhCC---C--e--EEEEEECCCCc-----------------
Q psy5680 63 KIDDFKQTIRGRNPVLAYFFKPSCGF-CKQLEPKISTVSETTS---G--V--EFVKINVENGG----------------- 117 (201)
Q Consensus 63 ~~~~~~~~~~~~~~vvv~f~a~wC~~-C~~~~~~l~~l~~~~~---~--~--~~~~vd~~~~~----------------- 117 (201)
+.++| .++.++++|.-+.||. |-.....+.++.+... + + .|..+|-+..+
T Consensus 133 te~df-----~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY~~eF~pkllG 207 (280)
T KOG2792|consen 133 TEKDF-----LGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEYVSEFHPKLLG 207 (280)
T ss_pred ccccc-----ccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHHHHhcChhhhc
Confidence 45555 7899999999999964 7776666665555432 2 2 34455543220
Q ss_pred --------hhHHHHCCCCccc-------------EEEEE---eCCeEEEEEeCCCCHHHHHHHHHHHHhh
Q psy5680 118 --------GEIAREFEVQAVP-------------TVIGF---RNGDPVDMVVGNADQDVIQTLVSKLSQK 163 (201)
Q Consensus 118 --------~~l~~~~~v~~~P-------------ti~~~---~~G~~v~~~~G~~~~~~l~~~i~~~~~~ 163 (201)
...|++|.|..-+ ++++| ++|+-+..+--..+.+++.+-|.+++..
T Consensus 208 LTGT~eqvk~vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~GrN~~~~~~~~~I~~~v~~ 277 (280)
T KOG2792|consen 208 LTGTTEQVKQVAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYGRNYDADELADSILKHVAS 277 (280)
T ss_pred ccCCHHHHHHHHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhhcccCCHHHHHHHHHHHHHh
Confidence 4567777775333 34444 6777775555567999999999888765
No 246
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=91.08 E-value=0.48 Score=33.35 Aligned_cols=33 Identities=21% Similarity=0.544 Sum_probs=26.7
Q ss_pred EEEECCCChhhHhhHHHHHHHHHhCCCeEEEEEECCCC
Q psy5680 79 AYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENG 116 (201)
Q Consensus 79 v~f~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~ 116 (201)
..|+.++|+.|++....+++ .++.+-.+|+.+.
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~-----~~i~~~~idi~~~ 34 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEA-----NGIEYQFIDIGED 34 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHH-----cCCceEEEecCCC
Confidence 47899999999999987777 3567778887765
No 247
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=90.97 E-value=3.4 Score=30.14 Aligned_cols=76 Identities=18% Similarity=0.385 Sum_probs=53.6
Q ss_pred CCcEEEEEECCCChhhHhhHHHHHHHHHhCCCeEEEEEECCCCchhHHHHCCCCc----ccEEEEEeCCeEEEEEeCCCC
Q psy5680 74 RNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQA----VPTVIGFRNGDPVDMVVGNAD 149 (201)
Q Consensus 74 ~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~l~~~~~v~~----~Pti~~~~~G~~v~~~~G~~~ 149 (201)
...-++.|++|.|+=|..+...++. .++.+-.+..+.- ..+-++|+|.. ==|.++ +|+. +.|-..
T Consensus 24 ~~~~~~vyksPnCGCC~~w~~~mk~-----~Gf~Vk~~~~~d~-~alK~~~gIp~e~~SCHT~VI--~Gy~---vEGHVP 92 (149)
T COG3019 24 QATEMVVYKSPNCGCCDEWAQHMKA-----NGFEVKVVETDDF-LALKRRLGIPYEMQSCHTAVI--NGYY---VEGHVP 92 (149)
T ss_pred ceeeEEEEeCCCCccHHHHHHHHHh-----CCcEEEEeecCcH-HHHHHhcCCChhhccccEEEE--cCEE---EeccCC
Confidence 3446888999999999998877773 4567777777777 67778888753 223333 5644 467678
Q ss_pred HHHHHHHHHHH
Q psy5680 150 QDVIQTLVSKL 160 (201)
Q Consensus 150 ~~~l~~~i~~~ 160 (201)
.+.+..++++.
T Consensus 93 a~aI~~ll~~~ 103 (149)
T COG3019 93 AEAIARLLAEK 103 (149)
T ss_pred HHHHHHHHhCC
Confidence 88888877654
No 248
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=90.58 E-value=0.47 Score=32.84 Aligned_cols=34 Identities=12% Similarity=0.240 Sum_probs=25.2
Q ss_pred EEEEECCCChhhHhhHHHHHHHHHhCCCeEEEEEECCCC
Q psy5680 78 LAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENG 116 (201)
Q Consensus 78 vv~f~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~ 116 (201)
+..|+.++|+.|++....|++- ++.+-.+|+.+.
T Consensus 1 i~iy~~~~C~~crka~~~L~~~-----~i~~~~~di~~~ 34 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEAR-----GVAYTFHDYRKD 34 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHc-----CCCeEEEecccC
Confidence 3579999999999988777662 556666666554
No 249
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=90.48 E-value=0.96 Score=34.19 Aligned_cols=44 Identities=25% Similarity=0.413 Sum_probs=33.2
Q ss_pred CCCcEEEEEECCCC-hhhHhhHHHHHHHHHhCC----CeEEEEEECCCC
Q psy5680 73 GRNPVLAYFFKPSC-GFCKQLEPKISTVSETTS----GVEFVKINVENG 116 (201)
Q Consensus 73 ~~~~vvv~f~a~wC-~~C~~~~~~l~~l~~~~~----~~~~~~vd~~~~ 116 (201)
++++++|.|.-+.| ..|-.....+.++.+.++ ++.++.|.+|-.
T Consensus 51 ~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~ 99 (174)
T PF02630_consen 51 KGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPE 99 (174)
T ss_dssp TTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTT
T ss_pred CCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCC
Confidence 79999999999999 678877777776665533 388888888754
No 250
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=90.11 E-value=4 Score=28.80 Aligned_cols=89 Identities=7% Similarity=0.004 Sum_probs=52.7
Q ss_pred hCCCcEEEEEECCCChhhHhhHHHHHHHHHhCCC--eEEEEE-ECCCC----------chhHHHHCCCCccc-EEEEE-e
Q psy5680 72 RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG--VEFVKI-NVENG----------GGEIAREFEVQAVP-TVIGF-R 136 (201)
Q Consensus 72 ~~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~--~~~~~v-d~~~~----------~~~l~~~~~v~~~P-ti~~~-~ 136 (201)
+++++++|.-=+..-+.=......+.+-...+.. +.++.+ +-... ...+.++|++..-. +++++ +
T Consensus 8 w~~R~lvv~aps~~d~~~~~q~~~L~~~~~~l~eRdi~v~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~f~~vLiGK 87 (118)
T PF13778_consen 8 WKNRLLVVFAPSADDPRYQQQLEELQNNRCGLDERDIVVIVITGDGARSPGKPLSPEDIQALRKRLRIPPGGFTVVLIGK 87 (118)
T ss_pred CcCceEEEECCCCCCHHHHHHHHHHHhhhhccccCceEEEEEeCCccccccCcCCHHHHHHHHHHhCCCCCceEEEEEeC
Confidence 4455444433233444444555555554444444 444443 33333 02788899966432 34444 8
Q ss_pred CCeEEEEEeCCCCHHHHHHHHHHH
Q psy5680 137 NGDPVDMVVGNADQDVIQTLVSKL 160 (201)
Q Consensus 137 ~G~~v~~~~G~~~~~~l~~~i~~~ 160 (201)
+|.+-.++....+.++|...|..+
T Consensus 88 DG~vK~r~~~p~~~~~lf~~ID~M 111 (118)
T PF13778_consen 88 DGGVKLRWPEPIDPEELFDTIDAM 111 (118)
T ss_pred CCcEEEecCCCCCHHHHHHHHhCC
Confidence 999888999999999999998764
No 251
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=89.72 E-value=0.79 Score=28.63 Aligned_cols=53 Identities=11% Similarity=0.135 Sum_probs=34.6
Q ss_pred EEEECCCChhhHhhHHHHHHHHHhCCCeEEEEEECCC---CchhHHHHCCCCcccEEEE
Q psy5680 79 AYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVEN---GGGEIAREFEVQAVPTVIG 134 (201)
Q Consensus 79 v~f~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~~---~~~~l~~~~~v~~~Pti~~ 134 (201)
..|+.++|+.|++.+-.+....-. +....++... ..+++.+......+|++..
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~~~l~---~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAEKGID---VPLVTVDLAAGEQRSPEFLAKNPAGTVPVLEL 57 (74)
T ss_pred EEEeCCCCcchHHHHHHHHHcCCC---ceEEEeecccCccCCHHHHhhCCCCCCCEEEe
Confidence 468889999999988777664222 4455565432 1145565666678899865
No 252
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=89.12 E-value=1 Score=27.17 Aligned_cols=57 Identities=14% Similarity=0.208 Sum_probs=35.3
Q ss_pred EEEECCCChhhHhhHHHHHHHHHhCCCeEEEEEECCCCch-hHHHHCCCCcccEEEEEeCCeE
Q psy5680 79 AYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGG-EIAREFEVQAVPTVIGFRNGDP 140 (201)
Q Consensus 79 v~f~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~-~l~~~~~v~~~Pti~~~~~G~~ 140 (201)
..|+.++|+.|.+..-.++...-. +....++...... ++.+..+-..+|++.. +|..
T Consensus 2 ~ly~~~~~~~~~~~~~~l~~~~i~---~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~--~~~~ 59 (71)
T cd00570 2 KLYYFPGSPRSLRVRLALEEKGLP---YELVPVDLGEGEQEEFLALNPLGKVPVLED--GGLV 59 (71)
T ss_pred EEEeCCCCccHHHHHHHHHHcCCC---cEEEEeCCCCCCCHHHHhcCCCCCCCEEEE--CCEE
Confidence 468889999999888776664211 4455555443301 2455567778998765 3543
No 253
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=89.08 E-value=1.1 Score=35.49 Aligned_cols=47 Identities=26% Similarity=0.361 Sum_probs=37.5
Q ss_pred hhHHHHCCCCcccEEEEEeCCeEEEEEeCCCCHHHHHHHHHHHHhhhhhcc
Q psy5680 118 GEIAREFEVQAVPTVIGFRNGDPVDMVVGNADQDVIQTLVSKLSQKLATHY 168 (201)
Q Consensus 118 ~~l~~~~~v~~~Pti~~~~~G~~v~~~~G~~~~~~l~~~i~~~~~~~~~~~ 168 (201)
-..++++||+++|++++ +|+. ...|..+.+.+...|++++.....+.
T Consensus 174 ~~~A~e~gI~gVP~fv~--d~~~--~V~Gaq~~~v~~~al~~~~~~~~~~~ 220 (225)
T COG2761 174 EAAAQEMGIRGVPTFVF--DGKY--AVSGAQPYDVLEDALRQLLAEKAEEH 220 (225)
T ss_pred HHHHHHCCCccCceEEE--cCcE--eecCCCCHHHHHHHHHHHHhcccccC
Confidence 34568999999999999 4433 56899999999999999987765543
No 254
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=88.48 E-value=1.3 Score=31.10 Aligned_cols=34 Identities=18% Similarity=0.434 Sum_probs=25.9
Q ss_pred EEEEECCCChhhHhhHHHHHHHHHhCCCeEEEEEECCCC
Q psy5680 78 LAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENG 116 (201)
Q Consensus 78 vv~f~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~ 116 (201)
+..|+.++|+.|++....+++- ++.+-.+|+.+.
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~-----gi~~~~idi~~~ 35 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEH-----QIPFEERNLFKQ 35 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-----CCceEEEecCCC
Confidence 4578899999999988777762 566667777654
No 255
>KOG1651|consensus
Probab=88.31 E-value=3.2 Score=31.15 Aligned_cols=60 Identities=10% Similarity=0.098 Sum_probs=43.1
Q ss_pred ceEEEeCCHhHHHHHHhCCCcEEEEEECCCChhhHhhHHHHHHHHHhCCC--eEEEEEECCCC
Q psy5680 56 MAYLIIEKIDDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG--VEFVKINVENG 116 (201)
Q Consensus 56 ~~v~~l~~~~~~~~~~~~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~--~~~~~vd~~~~ 116 (201)
+.++++ +++.+.----++++++|.=-|+-|+.-..--..++.|.++|.+ +.++..-|+..
T Consensus 17 f~~~d~-~G~~v~l~~yrGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~Gl~ILaFPCNQF 78 (171)
T KOG1651|consen 17 FSAKDL-DGEYVSLSQYRGKVVLIVNVASQCGLTESQYTELNELYEKYKDQGLEILAFPCNQF 78 (171)
T ss_pred eEEecC-CCCCccHHHhCCeEEEEEEcccccccchhcchhHHHHHHHHhhCCeEEEEeccccc
Confidence 345666 5544332224799999999999999998667789999999875 77777766533
No 256
>PRK12559 transcriptional regulator Spx; Provisional
Probab=88.15 E-value=1 Score=32.47 Aligned_cols=34 Identities=12% Similarity=0.443 Sum_probs=24.8
Q ss_pred EEEEECCCChhhHhhHHHHHHHHHhCCCeEEEEEECCCC
Q psy5680 78 LAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENG 116 (201)
Q Consensus 78 vv~f~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~ 116 (201)
+..|+.++|+.|++....|++- ++.+-.+|+.+.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~-----gi~~~~~di~~~ 35 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEEN-----QIDYTEKNIVSN 35 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc-----CCCeEEEEeeCC
Confidence 5689999999999988766652 555556666544
No 257
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=87.42 E-value=1.9 Score=34.63 Aligned_cols=67 Identities=10% Similarity=0.226 Sum_probs=41.0
Q ss_pred EEEeCCHhHHHHHHhCCCcEEEEEECCCChhhHhhHHHHHHHHHhCCCeEEEEEECCCCchhHHHHCC-CCcccEEEEEe
Q psy5680 58 YLIIEKIDDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFE-VQAVPTVIGFR 136 (201)
Q Consensus 58 v~~l~~~~~~~~~~~~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~l~~~~~-v~~~Pti~~~~ 136 (201)
...+ +..++ ...+|+.+++..+.|||.|...+=.|--.-.+|+++.+. ..... + .+ -..+|+++|..
T Consensus 46 ~~kv-sn~d~---~~~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfGn~~l~-~~~S~--~-----~d~~pn~Ptl~F~~ 113 (249)
T PF06053_consen 46 FFKV-SNQDL---APNGKPEVIFIGWEGCPYCAAESWALYIALSRFGNFSLE-YHYSD--P-----YDNYPNTPTLIFNN 113 (249)
T ss_pred eeee-cCccc---CCCCeeEEEEEecccCccchhhHHHHHHHHHhcCCeeeE-EeecC--c-----ccCCCCCCeEEEec
Confidence 5566 43333 257899999999999999977665554444567654221 11111 1 11 24688888773
No 258
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=87.31 E-value=1.3 Score=34.16 Aligned_cols=45 Identities=16% Similarity=0.151 Sum_probs=36.4
Q ss_pred hhHHHHCCCCcccEEEEEeCCeEEEEEeC--CCCHHHHHHHHHHHHh
Q psy5680 118 GEIAREFEVQAVPTVIGFRNGDPVDMVVG--NADQDVIQTLVSKLSQ 162 (201)
Q Consensus 118 ~~l~~~~~v~~~Pti~~~~~G~~v~~~~G--~~~~~~l~~~i~~~~~ 162 (201)
..+++++++.++||+++-++|+.-..-.| +.+.+++..++.+.+.
T Consensus 164 r~l~~rlg~~GfPTl~le~ng~~~~l~~g~y~~~~~~~~arl~~~~~ 210 (212)
T COG3531 164 RRLMQRLGAAGFPTLALERNGTMYVLGTGAYFGSPDAWLARLAQRLA 210 (212)
T ss_pred HHHHHHhccCCCCeeeeeeCCceEeccCCcccCCcHHHHHHHHHHHh
Confidence 56788999999999999999987655666 5677888888887653
No 259
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=86.83 E-value=1.9 Score=27.98 Aligned_cols=57 Identities=12% Similarity=0.239 Sum_probs=37.5
Q ss_pred EEEECCCChhhHhhHHHHHHHHHhCCCeEEEEEECCCCc-------------h--hHHHHCCCCcccEEEEEeCCeEE
Q psy5680 79 AYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGG-------------G--EIAREFEVQAVPTVIGFRNGDPV 141 (201)
Q Consensus 79 v~f~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~-------------~--~l~~~~~v~~~Pti~~~~~G~~v 141 (201)
+.|+|..||.|..+...++++. +.+-.|++.+.. + +-.+..|--++|.+++- +|+++
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~-----v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~~-d~~vV 76 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLN-----VDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLTD-DGKVV 76 (85)
T ss_pred eeeccccCcchHHHHHHHHHcC-----CCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEeC-CCcEE
Confidence 7899999999998888877763 333345554441 1 12345566689998764 56554
No 260
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=86.70 E-value=0.3 Score=32.32 Aligned_cols=53 Identities=23% Similarity=0.261 Sum_probs=43.6
Q ss_pred EECCCChhhHhhHHHHHHHHHhCC-C-eEEEEEECCCCchhHHHHCCCCcccEEEE
Q psy5680 81 FFKPSCGFCKQLEPKISTVSETTS-G-VEFVKINVENGGGEIAREFEVQAVPTVIG 134 (201)
Q Consensus 81 f~a~wC~~C~~~~~~l~~l~~~~~-~-~~~~~vd~~~~~~~l~~~~~v~~~Pti~~ 134 (201)
|-+..-+........++.+.+.+. + +.+--||+.++ |++++.++|-.+||++-
T Consensus 3 yV~g~~~~s~~a~~~l~~l~~~~l~~~~~LeVIDv~~~-P~lAe~~~ivAtPtLik 57 (82)
T PF07689_consen 3 YVAGRTPSSERAIENLRRLCEEYLGGRYELEVIDVLEQ-PELAEEDRIVATPTLIK 57 (82)
T ss_dssp EESSBHHHHHHHHHHHHHHHHCHCTTTEEEEEEETTTS-HSHHTTTEEECHHHHHT
T ss_pred EECCCChHHHHHHHHHHHHHHhhCCCcEEEEEEEcccC-HhHHhHCCeeecceEee
Confidence 455555677788888888887744 4 99999999999 99999999999999754
No 261
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=86.37 E-value=2.1 Score=26.83 Aligned_cols=53 Identities=15% Similarity=0.345 Sum_probs=34.5
Q ss_pred EEEECCCChhhHhhHHHHHHHHHhCCCeEEEEEECCCC---chhHHHHCCCCcccEEEE
Q psy5680 79 AYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENG---GGEIAREFEVQAVPTVIG 134 (201)
Q Consensus 79 v~f~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~---~~~l~~~~~v~~~Pti~~ 134 (201)
..|+.++|+.|++..-.+++..-. +....+|..+. .+++.+......+|++..
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~gi~---~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (74)
T cd03045 2 DLYYLPGSPPCRAVLLTAKALGLE---LNLKEVNLMKGEHLKPEFLKLNPQHTVPTLVD 57 (74)
T ss_pred EEEeCCCCCcHHHHHHHHHHcCCC---CEEEEecCccCCcCCHHHHhhCcCCCCCEEEE
Confidence 468899999999877666664222 45555654322 145666656678999953
No 262
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=85.24 E-value=3.6 Score=27.16 Aligned_cols=54 Identities=11% Similarity=0.158 Sum_probs=34.9
Q ss_pred EEEEECCCChhhHhhHHHHHHHHHhCCCeEEEEEECCCCchhHHHHCCCCcccEEEE
Q psy5680 78 LAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTVIG 134 (201)
Q Consensus 78 vv~f~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~l~~~~~v~~~Pti~~ 134 (201)
+..|+.+.|+.|++..-.+....- .+.+..++......++.+......+|++..
T Consensus 19 ~~Ly~~~~sp~~~kv~~~L~~~gl---~~~~~~v~~~~~~~~~~~~np~~~vPvL~~ 72 (89)
T cd03055 19 IRLYSMRFCPYAQRARLVLAAKNI---PHEVININLKDKPDWFLEKNPQGKVPALEI 72 (89)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCC---CCeEEEeCCCCCcHHHHhhCCCCCcCEEEE
Confidence 556778899999988766655321 155556665443134555666778999875
No 263
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=84.45 E-value=17 Score=28.11 Aligned_cols=87 Identities=20% Similarity=0.269 Sum_probs=59.2
Q ss_pred CCcEEEEEE-CCCChhhHhhHHHHHHHHHhCCC--eEEEEEECCCC---------------------------chhHHHH
Q psy5680 74 RNPVLAYFF-KPSCGFCKQLEPKISTVSETTSG--VEFVKINVENG---------------------------GGEIARE 123 (201)
Q Consensus 74 ~~~vvv~f~-a~wC~~C~~~~~~l~~l~~~~~~--~~~~~vd~~~~---------------------------~~~l~~~ 123 (201)
++.++++|| ++--+-|-.....+.+.+.+|.. +.++.+.+|.. +.++++.
T Consensus 33 gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g~eVigvS~Ds~fsH~aW~~~~~~~~gi~~i~~PmiaD~~~~vs~~ 112 (194)
T COG0450 33 GKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRGVEVIGVSTDSVFSHKAWKATIREAGGIGKIKFPMIADPKGEIARA 112 (194)
T ss_pred CcEEEEEeccCCCCccCcchHHHHHhhhHHHHHcCCEEEEEecCcHHHHHHHHhcHHhcCCccceecceEEcCchhHHHH
Confidence 466667776 55567787778788888777764 77777777755 2678899
Q ss_pred CCCCccc------EEEEE-eCCeEEEEE-----eCCCCHHHHHHHHHHHH
Q psy5680 124 FEVQAVP------TVIGF-RNGDPVDMV-----VGNADQDVIQTLVSKLS 161 (201)
Q Consensus 124 ~~v~~~P------ti~~~-~~G~~v~~~-----~G~~~~~~l~~~i~~~~ 161 (201)
||+..-. .++++ ++|.+.... .| .+.++++..|+.+.
T Consensus 113 ygvl~~~~g~a~R~~FIIDp~g~ir~~~v~~~~iG-Rn~dEilR~idAlq 161 (194)
T COG0450 113 YGVLHPEEGLALRGTFIIDPDGVIRHILVNPLTIG-RNVDEILRVIDALQ 161 (194)
T ss_pred cCCcccCCCcceeEEEEECCCCeEEEEEEecCCCC-cCHHHHHHHHHHHH
Confidence 9876422 34455 667654322 14 78899998887764
No 264
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=84.32 E-value=2.4 Score=30.64 Aligned_cols=34 Identities=15% Similarity=0.375 Sum_probs=25.0
Q ss_pred EEEEECCCChhhHhhHHHHHHHHHhCCCeEEEEEECCCC
Q psy5680 78 LAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENG 116 (201)
Q Consensus 78 vv~f~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~ 116 (201)
+..|+.++|+.|++....|++ .++.|-.+|+.+.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~-----~~i~~~~~d~~~~ 35 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNA-----HQLSYKEQNLGKE 35 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHH-----cCCCeEEEECCCC
Confidence 457889999999998866655 2566667776654
No 265
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=84.29 E-value=0.83 Score=31.89 Aligned_cols=43 Identities=14% Similarity=0.236 Sum_probs=37.4
Q ss_pred CCCcEEEEEECCCChhhHhhHHHHHHHHHhCCC--eEEEEEECCCC
Q psy5680 73 GRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG--VEFVKINVENG 116 (201)
Q Consensus 73 ~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~--~~~~~vd~~~~ 116 (201)
++++++|.=.|+-|+.-. ....|++|.++|.+ +.++.+=|+..
T Consensus 20 ~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~gl~ILaFPcnqF 64 (108)
T PF00255_consen 20 KGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDKGLEILAFPCNQF 64 (108)
T ss_dssp TTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGGTEEEEEEEBSTT
T ss_pred CCCEEEEEecccccCCcc-ccHHHHHHHHHHhcCCeEEEeeehHHh
Confidence 899999999999999988 67799999999974 88888888754
No 266
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=83.58 E-value=7.8 Score=24.50 Aligned_cols=57 Identities=11% Similarity=0.034 Sum_probs=35.9
Q ss_pred EEEECCCChhhHhhHHHHHHHHHhCCCeEEEEEECCC---CchhHHHHCCCCcccEEEEEeCCeE
Q psy5680 79 AYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVEN---GGGEIAREFEVQAVPTVIGFRNGDP 140 (201)
Q Consensus 79 v~f~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~~---~~~~l~~~~~v~~~Pti~~~~~G~~ 140 (201)
..|+.+.|+.|++.+-.+.+..- .+.+..+|... ..+++.+.-....+|++. .+|..
T Consensus 2 ~ly~~~~s~~s~rv~~~L~e~gl---~~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~--~~g~~ 61 (73)
T cd03052 2 VLYHWTQSFSSQKVRLVIAEKGL---RCEEYDVSLPLSEHNEPWFMRLNPTGEVPVLI--HGDNI 61 (73)
T ss_pred EEecCCCCccHHHHHHHHHHcCC---CCEEEEecCCcCccCCHHHHHhCcCCCCCEEE--ECCEE
Confidence 56888899999887755555421 15666666532 114466556667899985 36654
No 267
>COG5429 Uncharacterized secreted protein [Function unknown]
Probab=81.99 E-value=6.3 Score=31.38 Aligned_cols=85 Identities=20% Similarity=0.321 Sum_probs=59.6
Q ss_pred CCcEEEEEECCCChhhHhhHHHHHHHHHhCCCeEEEEEECCCC-----------------chhHHHHCCCCcccEEEEEe
Q psy5680 74 RNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENG-----------------GGEIAREFEVQAVPTVIGFR 136 (201)
Q Consensus 74 ~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~-----------------~~~l~~~~~v~~~Pti~~~~ 136 (201)
..-|+=.|++..|..|-.....+.+++++-. +.-+...+|.. -....+.|+-..++|=-.+-
T Consensus 41 ~~~VVELfTSQGCsSCPPAd~~l~k~a~~~~-vlALsyhVdYWdYlGWkDtlar~enTeRQ~aY~~a~g~~~vyTPQavv 119 (261)
T COG5429 41 PLGVVELFTSQGCSSCPPADANLAKLADDPG-VLALSYHVDYWDYLGWKDTLARKENTERQRAYARAFGARGVYTPQAVV 119 (261)
T ss_pred CceEEEEeecCCcCCCChHHHHHHHhccCCC-EEEEEEeecccccCCccccccchhhhHHHHHHHHhhccCCCCCchhee
Confidence 3557778899999999999999999886643 33333333322 04566788888887766666
Q ss_pred CCeEEEEEeCCCCHHHHHHHHHHHHh
Q psy5680 137 NGDPVDMVVGNADQDVIQTLVSKLSQ 162 (201)
Q Consensus 137 ~G~~v~~~~G~~~~~~l~~~i~~~~~ 162 (201)
+|+. ...| .+..++...|.....
T Consensus 120 nGr~--~~~G-ad~~~i~~~i~a~~~ 142 (261)
T COG5429 120 NGRV--HANG-ADPGAIEDAIAAMAR 142 (261)
T ss_pred echh--hhcC-CCHHHHHHHHHHhhc
Confidence 7765 3456 888999998887753
No 268
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=78.69 E-value=4.4 Score=31.53 Aligned_cols=41 Identities=17% Similarity=0.336 Sum_probs=32.9
Q ss_pred hhHHHHCCCCcccEEEEEeCCeEEEEEeCCCCHHHHHHHHHH
Q psy5680 118 GEIAREFEVQAVPTVIGFRNGDPVDMVVGNADQDVIQTLVSK 159 (201)
Q Consensus 118 ~~l~~~~~v~~~Pti~~~~~G~~v~~~~G~~~~~~l~~~i~~ 159 (201)
|.+.++|+|..+|++++... ....+..|..+..+-++.+.+
T Consensus 152 P~lF~~F~I~~VPafVv~C~-~~yD~I~GNIsl~~ALe~iA~ 192 (212)
T PRK13730 152 PTLFSQYGIRSVPALVVFCS-QGYDIIRGNLRVGQALEKVAA 192 (212)
T ss_pred HHHHHhcCCccccEEEEEcC-CCCCEEEecccHHHHHHHHHh
Confidence 88999999999999999854 334578898888777766664
No 269
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=78.56 E-value=3.3 Score=31.24 Aligned_cols=27 Identities=37% Similarity=0.886 Sum_probs=24.9
Q ss_pred EEEEECCCChhhHhhHHHHHHHHHhCC
Q psy5680 78 LAYFFKPSCGFCKQLEPKISTVSETTS 104 (201)
Q Consensus 78 vv~f~a~wC~~C~~~~~~l~~l~~~~~ 104 (201)
+.+|+-+.||.|....+.+.++.+.++
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~~ 29 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEYG 29 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHhC
Confidence 678899999999999999999999984
No 270
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=77.75 E-value=13 Score=22.78 Aligned_cols=57 Identities=16% Similarity=0.208 Sum_probs=34.7
Q ss_pred EEEECCCChhhHhhHHHHHHHHHhCCCeEEEEEECCC---CchhHHHHCCCCcccEEEEEeCCeE
Q psy5680 79 AYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVEN---GGGEIAREFEVQAVPTVIGFRNGDP 140 (201)
Q Consensus 79 v~f~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~~---~~~~l~~~~~v~~~Pti~~~~~G~~ 140 (201)
..|+.++|+.|++..-.+....-. +....++... ..+++.+......+|++.. +|..
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~~~~---~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~--~~~~ 61 (73)
T cd03056 2 KLYGFPLSGNCYKVRLLLALLGIP---YEWVEVDILKGETRTPEFLALNPNGEVPVLEL--DGRV 61 (73)
T ss_pred EEEeCCCCccHHHHHHHHHHcCCC---cEEEEecCCCcccCCHHHHHhCCCCCCCEEEE--CCEE
Confidence 468889999999887666654222 4555555432 1134444455667899864 4544
No 271
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=76.67 E-value=46 Score=28.27 Aligned_cols=104 Identities=10% Similarity=0.082 Sum_probs=67.4
Q ss_pred eEEEeCCHhH-HHHHH-hCCCcEEEEEECCCChhhHhhHHHHHHHHHhCCC---eEEEEEECCCCchhHH----HHCCCC
Q psy5680 57 AYLIIEKIDD-FKQTI-RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG---VEFVKINVENGGGEIA----REFEVQ 127 (201)
Q Consensus 57 ~v~~l~~~~~-~~~~~-~~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~---~~~~~vd~~~~~~~l~----~~~~v~ 127 (201)
.++.+ +.++ |.-.- ..++.++|-|--..-+.-..+...++++++.+.+ +.++.||-+.. |-+. +.|+|.
T Consensus 250 tlrkl-~~~~m~e~Wedd~~g~hIvaFaee~dpdG~efleilk~va~~nt~np~LsivwIDPD~f-Pllv~yWE~tF~Id 327 (383)
T PF01216_consen 250 TLRKL-RPEDMFETWEDDIDGIHIVAFAEEEDPDGFEFLEILKQVARDNTDNPDLSIVWIDPDDF-PLLVPYWEKTFGID 327 (383)
T ss_dssp SEEE---GGGHHHHHHSSSSSEEEEEE--TTSHHHHHHHHHHHHHHHHCTT-TT--EEEE-GGG--HHHHHHHHHHHTT-
T ss_pred HhhhC-ChhhhhhhhcccCCCceEEEEecCCCCchHHHHHHHHHHHHhcCcCCceeEEEECCCCC-chhHHHHHhhcCcc
Confidence 37888 6666 44444 6678899999999999999999999999998754 99999999988 7554 466765
Q ss_pred c-ccEEEEEe--CCeEEE-EEe---CCCCHHHHHHHHHHHHh
Q psy5680 128 A-VPTVIGFR--NGDPVD-MVV---GNADQDVIQTLVSKLSQ 162 (201)
Q Consensus 128 ~-~Pti~~~~--~G~~v~-~~~---G~~~~~~l~~~i~~~~~ 162 (201)
- -|.+-++. +-.-+. ... ...+.+++..||+..+.
T Consensus 328 l~~PqIGvVnvtdadsvW~dm~d~~d~pt~~~LedWieDVls 369 (383)
T PF01216_consen 328 LSRPQIGVVNVTDADSVWMDMDDDDDLPTAEELEDWIEDVLS 369 (383)
T ss_dssp TTS-EEEEEETTTSEEEEC-STTTSS---HHHHHHHHHHHHC
T ss_pred ccCCceeEEeccccccchhccCCcccCCcHHHHHHHHHHHhc
Confidence 3 39988873 222222 222 34588999999999884
No 272
>KOG0912|consensus
Probab=76.48 E-value=2.1 Score=35.41 Aligned_cols=129 Identities=14% Similarity=0.194 Sum_probs=76.3
Q ss_pred ccccccccccccccceeeeecCCCccccccCCCCccccccccccccceEEEeCCHhHHHHHH-hCCCcEEEEEECCCChh
Q psy5680 10 ETITEMFSFHRSAAAHVTFHNSGGKLSARAALPPRAHLLNLIQAIQMAYLIIEKIDDFKQTI-RGRNPVLAYFFKPSCGF 88 (201)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~-~~~~~vvv~f~a~wC~~ 88 (201)
.++++.|.|.|+.+++..|+...-.. + +.+.++.++++.+. .+.+.++.+|-....+.
T Consensus 83 ~~~~rEYRg~RsVeaL~efi~kq~s~---------~------------i~Ef~sl~~l~n~~~p~K~~vIgyF~~kdspe 141 (375)
T KOG0912|consen 83 EMMKREYRGQRSVEALIEFIEKQLSD---------P------------INEFESLDQLQNLDIPSKRTVIGYFPSKDSPE 141 (375)
T ss_pred chhhhhhccchhHHHHHHHHHHHhcc---------H------------HHHHHhHHHHHhhhccccceEEEEeccCCCch
Confidence 35677899999999999998652111 0 34444667777776 46777777777666554
Q ss_pred hHhhHHHHHHHHHhCCC-eEE-EEE-ECCCCchhHHHHCCCCcccEEEEEeCCeEEE--EEeCC-CCHHHHHHHHHHHHh
Q psy5680 89 CKQLEPKISTVSETTSG-VEF-VKI-NVENGGGEIAREFEVQAVPTVIGFRNGDPVD--MVVGN-ADQDVIQTLVSKLSQ 162 (201)
Q Consensus 89 C~~~~~~l~~l~~~~~~-~~~-~~v-d~~~~~~~l~~~~~v~~~Pti~~~~~G~~v~--~~~G~-~~~~~l~~~i~~~~~ 162 (201)
-.. +.+++.-+.+ ..| +.+ |... ...-.+.+ +++|+.+.... .|.|. .+.+++.+||.+-.-
T Consensus 142 y~~----~~kva~~lr~dc~f~V~~gD~~~-------~~~~~~~~-~~~f~pd~~~~~~~f~G~~~nf~el~~Wi~dKcv 209 (375)
T KOG0912|consen 142 YDN----LRKVASLLRDDCVFLVGFGDLLK-------PHEPPGKN-ILVFDPDHSEPNHEFLGSMTNFDELKQWIQDKCV 209 (375)
T ss_pred HHH----HHHHHHHHhhccEEEeecccccc-------CCCCCCCc-eEEeCCCcCCcCcccccccccHHHHHHHHHhcch
Confidence 433 4455555544 333 222 2221 11122222 44444333222 57886 488999999999877
Q ss_pred hhhhccccc
Q psy5680 163 KLATHYQVD 171 (201)
Q Consensus 163 ~~~~~~~~~ 171 (201)
++-.|.+.+
T Consensus 210 pLVREiTFe 218 (375)
T KOG0912|consen 210 PLVREITFE 218 (375)
T ss_pred hhhhhhhhc
Confidence 776665543
No 273
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=75.87 E-value=13 Score=31.21 Aligned_cols=104 Identities=8% Similarity=0.118 Sum_probs=59.4
Q ss_pred EEEeCCHhHHHHHHhCCCcEEEEEECCCChhhHhh----HHHHHHHHHhCCC----eEEEEEECCCCch--hHHHHCCCC
Q psy5680 58 YLIIEKIDDFKQTIRGRNPVLAYFFKPSCGFCKQL----EPKISTVSETTSG----VEFVKINVENGGG--EIAREFEVQ 127 (201)
Q Consensus 58 v~~l~~~~~~~~~~~~~~~vvv~f~a~wC~~C~~~----~~~l~~l~~~~~~----~~~~~vd~~~~~~--~l~~~~~v~ 127 (201)
+.++.-..++.+.+.- +..-+.|- .||.|-+. ...++++.+.+.+ +.+..+-|--|+| ..-..+|+.
T Consensus 239 ~~EV~V~~eILqslgl-R~~~v~~i--aCP~CGR~~~dv~~~~~~~~~~~~~~~~pl~VAVMGCVVNGPGEak~AdiGia 315 (361)
T COG0821 239 VEEVKVAQEILQSLGL-RSRGVEVI--ACPTCGRTEFDVIQTLNEVEQRLEHLKTPLKVAVMGCVVNGPGEAKHADIGIA 315 (361)
T ss_pred hhhhHHHHHHHHHhCc-cccCceEE--ECCCCCceeehHHHHHHHHHHHhhccCCCceEEEEEeEecCCcchhccceeee
Confidence 3444344555555421 22222232 37777443 3344555555543 5555555543322 223356655
Q ss_pred c--ccEEEEEeCCeEEEEEeCCCCHHHHHHHHHHHHhhh
Q psy5680 128 A--VPTVIGFRNGDPVDMVVGNADQDVIQTLVSKLSQKL 164 (201)
Q Consensus 128 ~--~Pti~~~~~G~~v~~~~G~~~~~~l~~~i~~~~~~~ 164 (201)
. -|...+|.+|+.+.+..+..-.++|...+++..+..
T Consensus 316 ~~~~~~~~~f~~g~~~~~~~~~~~~eel~~~i~~~~~~~ 354 (361)
T COG0821 316 GGGKGSGPVFVKGEIIKKLPEEDIVEELEALIEAYAEER 354 (361)
T ss_pred cCCCCeeEEEECCeEEEecChhhHHHHHHHHHHHHHHHh
Confidence 4 588999999999988888677777777777776554
No 274
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=75.21 E-value=5.8 Score=30.14 Aligned_cols=36 Identities=25% Similarity=0.355 Sum_probs=28.7
Q ss_pred hhHHHHCCCCcccEEEEEeCCeEEEEEeCCCCHHHHHHHH
Q psy5680 118 GEIAREFEVQAVPTVIGFRNGDPVDMVVGNADQDVIQTLV 157 (201)
Q Consensus 118 ~~l~~~~~v~~~Pti~~~~~G~~v~~~~G~~~~~~l~~~i 157 (201)
...+.+.||.++|++++ +|+. ...|..+.+.+.+.|
T Consensus 165 ~~~a~~~gv~G~Pt~vv--~g~~--~~~G~~~~~~~~~~i 200 (201)
T cd03024 165 EARARQLGISGVPFFVF--NGKY--AVSGAQPPEVFLQAL 200 (201)
T ss_pred HHHHHHCCCCcCCEEEE--CCeE--eecCCCCHHHHHHHh
Confidence 45667899999999998 5653 468988999888776
No 275
>KOG1422|consensus
Probab=72.70 E-value=29 Score=27.25 Aligned_cols=72 Identities=13% Similarity=0.152 Sum_probs=45.7
Q ss_pred CChhhHhhHHHHHHHHHhCCCeEEEEEECCCCchhHHHHCC-CCcccEEEEEeCCeEEEEEeCCCCHHHHHHHHHHHHhh
Q psy5680 85 SCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFE-VQAVPTVIGFRNGDPVDMVVGNADQDVIQTLVSKLSQK 163 (201)
Q Consensus 85 wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~l~~~~~-v~~~Pti~~~~~G~~v~~~~G~~~~~~l~~~i~~~~~~ 163 (201)
.|+.|+++.-.+. .+..-+.+-.||.... ++-....- -...|.+.+ +|+ +..+.+.++++|++.+.+
T Consensus 20 dcpf~qr~~m~L~---~k~~~f~vttVd~~~k-p~~f~~~sp~~~~P~l~~--d~~------~~tDs~~Ie~~Lee~l~~ 87 (221)
T KOG1422|consen 20 DCPFCQRLFMTLE---LKGVPFKVTTVDLSRK-PEWFLDISPGGKPPVLKF--DEK------WVTDSDKIEEFLEEKLPP 87 (221)
T ss_pred CChhHHHHHHHHH---HcCCCceEEEeecCCC-cHHHHhhCCCCCCCeEEe--CCc------eeccHHHHHHHHHHhcCC
Confidence 3777777665544 2333378889999888 66655544 444555444 332 336788999999988766
Q ss_pred hhhcc
Q psy5680 164 LATHY 168 (201)
Q Consensus 164 ~~~~~ 168 (201)
..-..
T Consensus 88 p~~~~ 92 (221)
T KOG1422|consen 88 PKLPT 92 (221)
T ss_pred CCCcc
Confidence 54433
No 276
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=72.05 E-value=6.4 Score=31.31 Aligned_cols=44 Identities=18% Similarity=0.396 Sum_probs=35.7
Q ss_pred hCCCcEEEEEECCCChhhHhhHHHHHHHHHh-----CCCeEEEEEECCC
Q psy5680 72 RGRNPVLAYFFKPSCGFCKQLEPKISTVSET-----TSGVEFVKINVEN 115 (201)
Q Consensus 72 ~~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~-----~~~~~~~~vd~~~ 115 (201)
..+.++||-+-..+|..|......|+.|..+ ++++.|+.||--.
T Consensus 24 ~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~~ 72 (238)
T PF04592_consen 24 SLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQG 72 (238)
T ss_pred cCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCCC
Confidence 4789999999999999999988888777644 4459999998543
No 277
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=71.38 E-value=8.5 Score=26.93 Aligned_cols=34 Identities=15% Similarity=0.319 Sum_probs=24.3
Q ss_pred EEEEECCCChhhHhhHHHHHHHHHhCCCeEEEEEECCCC
Q psy5680 78 LAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENG 116 (201)
Q Consensus 78 vv~f~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~ 116 (201)
+..|+.|.|+.|++....|++- ++.+-.+|+.+.
T Consensus 2 i~iy~~p~C~~crkA~~~L~~~-----gi~~~~~d~~~~ 35 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEAA-----GHEVEVRDLLTE 35 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-----CCCcEEeehhcC
Confidence 4678999999999988666652 455556665544
No 278
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=71.29 E-value=35 Score=24.38 Aligned_cols=59 Identities=15% Similarity=0.235 Sum_probs=36.1
Q ss_pred CeEEEEEECCCCch----------hHHHHCCCCcccEEEEEeCCeEEEEEeCCCCHHHHHHHHHHHHhhhhhc
Q psy5680 105 GVEFVKINVENGGG----------EIAREFEVQAVPTVIGFRNGDPVDMVVGNADQDVIQTLVSKLSQKLATH 167 (201)
Q Consensus 105 ~~~~~~vd~~~~~~----------~l~~~~~v~~~Pti~~~~~G~~v~~~~G~~~~~~l~~~i~~~~~~~~~~ 167 (201)
++.+.+.|...+ | ++.++-|...+|-+++ +|+++ ..-.+.+.++|.+|+.-........
T Consensus 40 gv~v~RyNL~~~-P~aF~~n~~V~~~L~~~G~e~LPitlV--dGeiv-~~G~YPt~eEl~~~~~i~~~~~~~~ 108 (123)
T PF06953_consen 40 GVEVERYNLAQN-PQAFVENPEVNQLLQTEGAEALPITLV--DGEIV-KTGRYPTNEELAEWLGISFSELEKE 108 (123)
T ss_dssp T-EEEEEETTT--TTHHHHSHHHHHHHHHH-GGG-SEEEE--TTEEE-EESS---HHHHHHHHT--GGGTT--
T ss_pred CceEEEEccccC-HHHHHhCHHHHHHHHHcCcccCCEEEE--CCEEE-EecCCCCHHHHHHHhCCCccccccc
Confidence 599999999887 4 3345668899999888 78664 4455689999999997776655443
No 279
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=71.26 E-value=34 Score=26.22 Aligned_cols=64 Identities=17% Similarity=0.252 Sum_probs=40.3
Q ss_pred CCCcEEEEEECCCChhhHhhHHHHHHHHHhCCCeEEEEEECCCCchhHHHHCCCCcccEEEEEeCCeEE
Q psy5680 73 GRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTVIGFRNGDPV 141 (201)
Q Consensus 73 ~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~l~~~~~v~~~Pti~~~~~G~~v 141 (201)
.+...+..|+.++|+.|.+..-.+++..- .+.+..+|.....+++.+..-...+|++. .+|..+
T Consensus 6 ~~~~~~~Ly~~~~s~~~~rv~~~L~e~gl---~~e~~~v~~~~~~~~~~~~nP~g~VPvL~--~~g~~l 69 (211)
T PRK09481 6 NKRSVMTLFSGPTDIYSHQVRIVLAEKGV---SVEIEQVEKDNLPQDLIDLNPYQSVPTLV--DRELTL 69 (211)
T ss_pred CCCCeeEEeCCCCChhHHHHHHHHHHCCC---CCEEEeCCcccCCHHHHHhCCCCCCCEEE--ECCEEe
Confidence 34455667777899999998866665321 15666677654414555555566799996 355443
No 280
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=70.99 E-value=41 Score=25.15 Aligned_cols=41 Identities=15% Similarity=0.306 Sum_probs=29.1
Q ss_pred HHHHCCCCcc-cEEEEE-eCCeEEEEEeCCCCHHHHHHHHHHH
Q psy5680 120 IAREFEVQAV-PTVIGF-RNGDPVDMVVGNADQDVIQTLVSKL 160 (201)
Q Consensus 120 l~~~~~v~~~-Pti~~~-~~G~~v~~~~G~~~~~~l~~~i~~~ 160 (201)
....|+...- -+++++ ++|++.....|.++.+++.+.|.-.
T Consensus 115 ~~~aW~L~~~~SaiiVlDK~G~V~F~k~G~Ls~~Ev~qVi~Ll 157 (160)
T PF09695_consen 115 VRKAWQLQEESSAIIVLDKQGKVQFVKEGALSPAEVQQVIALL 157 (160)
T ss_pred eeccccCCCCCceEEEEcCCccEEEEECCCCCHHHHHHHHHHH
Confidence 3445555543 345555 8888888999999999999887643
No 281
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=70.80 E-value=29 Score=23.29 Aligned_cols=66 Identities=17% Similarity=0.298 Sum_probs=42.0
Q ss_pred CCCChhhHhhHHHHHHHHHhCCC--eEEEEEECCCCchh-HHHHCCCCcccEEEEEeCCeEEEEEeCCCCHHHHHHHHHH
Q psy5680 83 KPSCGFCKQLEPKISTVSETTSG--VEFVKINVENGGGE-IAREFEVQAVPTVIGFRNGDPVDMVVGNADQDVIQTLVSK 159 (201)
Q Consensus 83 a~wC~~C~~~~~~l~~l~~~~~~--~~~~~vd~~~~~~~-l~~~~~v~~~Pti~~~~~G~~v~~~~G~~~~~~l~~~i~~ 159 (201)
..+|+.|++.+=.+.+. + +.+..+|.... ++ +.+..-...+|++. .+|..+ .+...+.++|++
T Consensus 19 ~g~cpf~~rvrl~L~eK-----gi~ye~~~vd~~~~-p~~~~~~nP~g~vPvL~--~~~~~i------~eS~~I~eYLde 84 (91)
T cd03061 19 IGNCPFCQRLFMVLWLK-----GVVFNVTTVDMKRK-PEDLKDLAPGTQPPFLL--YNGEVK------TDNNKIEEFLEE 84 (91)
T ss_pred CCCChhHHHHHHHHHHC-----CCceEEEEeCCCCC-CHHHHHhCCCCCCCEEE--ECCEEe------cCHHHHHHHHHH
Confidence 36799999887666553 4 56677776665 44 44444456789654 345433 456777887777
Q ss_pred HHh
Q psy5680 160 LSQ 162 (201)
Q Consensus 160 ~~~ 162 (201)
...
T Consensus 85 ~~~ 87 (91)
T cd03061 85 TLC 87 (91)
T ss_pred Hcc
Confidence 643
No 282
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=69.11 E-value=25 Score=21.84 Aligned_cols=69 Identities=14% Similarity=0.277 Sum_probs=40.0
Q ss_pred EEEECCCChhhHhhHHHHHHHHHhCCCeEEEEEECCCCchhHHHHCCC--CcccEEEEEeCCeEEEEEeCCCCHHHHHHH
Q psy5680 79 AYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEV--QAVPTVIGFRNGDPVDMVVGNADQDVIQTL 156 (201)
Q Consensus 79 v~f~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~l~~~~~v--~~~Pti~~~~~G~~v~~~~G~~~~~~l~~~ 156 (201)
..|+.+.|+.|.+..-.+....-. +....++.... ++...+.+. ..+|++.. +|..+ .+...+.++
T Consensus 2 ~Ly~~~~sp~~~~v~~~l~~~gl~---~~~~~~~~~~~-~~~~~~~~p~~~~vP~l~~--~~~~l------~eS~aI~~y 69 (74)
T cd03058 2 KLLGAWASPFVLRVRIALALKGVP---YEYVEEDLGNK-SELLLASNPVHKKIPVLLH--NGKPI------CESLIIVEY 69 (74)
T ss_pred EEEECCCCchHHHHHHHHHHcCCC---CEEEEeCcccC-CHHHHHhCCCCCCCCEEEE--CCEEe------ehHHHHHHH
Confidence 356788999999988666664222 45555554433 233334443 57998863 45332 344666666
Q ss_pred HHH
Q psy5680 157 VSK 159 (201)
Q Consensus 157 i~~ 159 (201)
|++
T Consensus 70 L~~ 72 (74)
T cd03058 70 IDE 72 (74)
T ss_pred HHh
Confidence 654
No 283
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=68.46 E-value=8.3 Score=26.54 Aligned_cols=57 Identities=14% Similarity=0.416 Sum_probs=36.4
Q ss_pred EECCCChhhHhhHHHHHHHHHhCCCeEEEEEECCCCchhHHHHCCCC--cccEEEE-EeCCe
Q psy5680 81 FFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQ--AVPTVIG-FRNGD 139 (201)
Q Consensus 81 f~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~l~~~~~v~--~~Pti~~-~~~G~ 139 (201)
||-.+|+.|......+.+. .....+.|+.+.-... .++.+.+++. ..-+.+. ..+|+
T Consensus 2 ~YDg~C~lC~~~~~~l~~~-d~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~g~ 61 (114)
T PF04134_consen 2 FYDGDCPLCRREVRFLRRR-DRGGRLRFVDIQSEPD-QALLASYGISPEDADSRLHLIDDGE 61 (114)
T ss_pred EECCCCHhHHHHHHHHHhc-CCCCCEEEEECCChhh-hhHHHhcCcCHHHHcCeeEEecCCC
Confidence 7889999999999888776 1222266666533333 4556677765 3455444 46776
No 284
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=68.26 E-value=26 Score=21.76 Aligned_cols=70 Identities=9% Similarity=0.104 Sum_probs=40.9
Q ss_pred EEEEECCCChhhHhhHHHHHHHHHhCCCeEEEEEECCC---CchhHHHHCCCCcccEEEEEeCCeEEEEEeCCCCHHHHH
Q psy5680 78 LAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVEN---GGGEIAREFEVQAVPTVIGFRNGDPVDMVVGNADQDVIQ 154 (201)
Q Consensus 78 vv~f~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~~---~~~~l~~~~~v~~~Pti~~~~~G~~v~~~~G~~~~~~l~ 154 (201)
+..|+.+.|+.|++..-.+....-. +.+..++... ..+++.+......+|++.. +|..+ .....+.
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i~---~~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~~--~g~~l------~es~aI~ 70 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGVD---YELVPVDLTKGEHKSPEHLARNPFGQIPALED--GDLKL------FESRAIT 70 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCCC---cEEEEeCccccccCCHHHHhhCCCCCCCEEEE--CCEEE------EcHHHHH
Confidence 4566677899998887666654222 4555555431 1145666666778998753 45432 3345555
Q ss_pred HHHH
Q psy5680 155 TLVS 158 (201)
Q Consensus 155 ~~i~ 158 (201)
++|.
T Consensus 71 ~yL~ 74 (76)
T cd03053 71 RYLA 74 (76)
T ss_pred HHHh
Confidence 5554
No 285
>KOG1364|consensus
Probab=67.84 E-value=9.1 Score=32.18 Aligned_cols=61 Identities=10% Similarity=0.172 Sum_probs=48.9
Q ss_pred eEEEEEECCCCchhHHHHCCCCcccEEEEE--eCCeEEEEEeCCCCHHHHHHHHHHHHhhhhhc
Q psy5680 106 VEFVKINVENGGGEIAREFEVQAVPTVIGF--RNGDPVDMVVGNADQDVIQTLVSKLSQKLATH 167 (201)
Q Consensus 106 ~~~~~vd~~~~~~~l~~~~~v~~~Pti~~~--~~G~~v~~~~G~~~~~~l~~~i~~~~~~~~~~ 167 (201)
.-.+..|..+. ..+...|.+..+|.+.++ .-|+.+.+..|....++|.+-+++.+..-.-+
T Consensus 133 wllV~~Dtseg-~~~~~Fy~~~~~P~i~iiDp~Tge~v~~ws~vi~~~~fl~~l~~Fi~~~~~d 195 (356)
T KOG1364|consen 133 WLLVLDDTSEG-QPFSAFYHISSLPHIAIIDPITGERVKRWSGVIEPEQFLSDLNEFIDSCPHD 195 (356)
T ss_pred EEEEeeccCCC-CchhhheeccCCceEEEECCchhhhhhhhccccCHHHHHHHHHHHHhcCCcc
Confidence 34445555555 788999999999999998 67888889999999999999999988665444
No 286
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=64.32 E-value=13 Score=25.90 Aligned_cols=33 Identities=12% Similarity=0.281 Sum_probs=24.9
Q ss_pred EEEECCCChhhHhhHHHHHHHHHhCCCeEEEEEECCCC
Q psy5680 79 AYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENG 116 (201)
Q Consensus 79 v~f~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~ 116 (201)
..|+.+.|..|++....+++- ++.+-.+|+.+.
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~-----~i~~~~~di~~~ 34 (114)
T TIGR00014 2 TIYHNPRCSKSRNTLALLEDK-----GIEPEVVKYLKN 34 (114)
T ss_pred EEEECCCCHHHHHHHHHHHHC-----CCCeEEEeccCC
Confidence 578999999999988777662 556666776655
No 287
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=63.92 E-value=42 Score=22.58 Aligned_cols=68 Identities=22% Similarity=0.296 Sum_probs=38.7
Q ss_pred CChhhHhhHH-----HH--HHHHHhCCC--eEEEEEECCCCch------hHHHHCC--CCcccEEEEEeCCeEEEEEeCC
Q psy5680 85 SCGFCKQLEP-----KI--STVSETTSG--VEFVKINVENGGG------EIAREFE--VQAVPTVIGFRNGDPVDMVVGN 147 (201)
Q Consensus 85 wC~~C~~~~~-----~l--~~l~~~~~~--~~~~~vd~~~~~~------~l~~~~~--v~~~Pti~~~~~G~~v~~~~G~ 147 (201)
-|..|-.+-. .| ..+.++|++ +.+..||+... + +++++.. -.-+|-+++ +|+.++ .|.
T Consensus 8 ~CASCVn~PsSkeTyeWL~aal~RKyp~~~f~~~YiDi~~p-~~~~~~~~~a~~I~ede~fYPlV~i--~~eiV~--EGn 82 (93)
T PF07315_consen 8 ICASCVNAPSSKETYEWLEAALKRKYPDQPFEFTYIDIENP-PENDHDQQFAERILEDELFYPLVVI--NDEIVA--EGN 82 (93)
T ss_dssp --GGGSSS--HHHHHHHHHHHHHHH-TTS-EEEEEEETTT-----HHHHHHHHHHHTTSS-SSEEEE--TTEEEE--ESS
T ss_pred cchhhcCCCCchhHHHHHHHHHhCcCCCCceEEEEEecCCC-CccHHHHHHHHHHHhcccccceEEE--CCEEEe--cCC
Confidence 4888865433 22 456788998 99999999876 3 3444332 345787777 777753 576
Q ss_pred CCHHHHHHHH
Q psy5680 148 ADQDVIQTLV 157 (201)
Q Consensus 148 ~~~~~l~~~i 157 (201)
.....+.+++
T Consensus 83 p~LK~I~~~~ 92 (93)
T PF07315_consen 83 PQLKDIYEEM 92 (93)
T ss_dssp --HHHHHHHH
T ss_pred ccHHHHHHhh
Confidence 6667766655
No 288
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=63.76 E-value=14 Score=27.67 Aligned_cols=35 Identities=29% Similarity=0.384 Sum_probs=25.4
Q ss_pred hhHHHHCCCCcccEEEEEeCCeEEEEEeCCCCHHHHHHHH
Q psy5680 118 GEIAREFEVQAVPTVIGFRNGDPVDMVVGNADQDVIQTLV 157 (201)
Q Consensus 118 ~~l~~~~~v~~~Pti~~~~~G~~v~~~~G~~~~~~l~~~i 157 (201)
...+.++||.++|++++ +|+ .+.|.-..+.+...|
T Consensus 157 ~~~a~~~gi~gvPtfvv--~g~---~~~G~~~l~~~~~~l 191 (192)
T cd03022 157 TEEAIARGVFGVPTFVV--DGE---MFWGQDRLDMLEEAL 191 (192)
T ss_pred HHHHHHcCCCcCCeEEE--CCe---eecccccHHHHHHHh
Confidence 45567899999999998 664 456866666666554
No 289
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=63.32 E-value=14 Score=25.61 Aligned_cols=34 Identities=12% Similarity=0.300 Sum_probs=24.5
Q ss_pred EEEEECCCChhhHhhHHHHHHHHHhCCCeEEEEEECCCC
Q psy5680 78 LAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENG 116 (201)
Q Consensus 78 vv~f~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~ 116 (201)
+..|+.+.|..|++....+++- ++.+..+|+.+.
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~-----~i~~~~~di~~~ 34 (112)
T cd03034 1 ITIYHNPRCSKSRNALALLEEA-----GIEPEIVEYLKT 34 (112)
T ss_pred CEEEECCCCHHHHHHHHHHHHC-----CCCeEEEecccC
Confidence 3578999999999987666552 456666776554
No 290
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=61.63 E-value=83 Score=25.24 Aligned_cols=69 Identities=14% Similarity=0.150 Sum_probs=44.0
Q ss_pred EEEeCCHhHHHHHHhCCCcEEEEEECCC------ChhhHhhHHHHHHHHHhCCC-eEEEEEECCCCchhHHHH----CCC
Q psy5680 58 YLIIEKIDDFKQTIRGRNPVLAYFFKPS------CGFCKQLEPKISTVSETTSG-VEFVKINVENGGGEIARE----FEV 126 (201)
Q Consensus 58 v~~l~~~~~~~~~~~~~~~vvv~f~a~w------C~~C~~~~~~l~~l~~~~~~-~~~~~vd~~~~~~~l~~~----~~v 126 (201)
...| +..+.+-+-.-+++|-|.+|.+. -..=......|+++++.-++ +.+-.+|.+.+ ++..++ +|+
T Consensus 9 ~ysL-S~~T~~~L~~L~~pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~s~g~i~v~~iDp~~~-~~~~~~~~~~~Gi 86 (271)
T PF09822_consen 9 RYSL-SDQTKKVLKSLDEPVTITVYFSRELPPELSPLRKQVRDLLDEYARYSPGKIKVEFIDPDEN-PSEAEEKAKEYGI 86 (271)
T ss_pred CccC-CHHHHHHHHhCCCCEEEEEEECCCcchhhhHHHHHHHHHHHHHHHhCCCceEEEEECCCCC-hHHHHHHHHhcCC
Confidence 3445 55544333344667777777665 34445555566777766774 99999999777 666655 887
Q ss_pred Cc
Q psy5680 127 QA 128 (201)
Q Consensus 127 ~~ 128 (201)
..
T Consensus 87 ~~ 88 (271)
T PF09822_consen 87 QP 88 (271)
T ss_pred Cc
Confidence 76
No 291
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=61.07 E-value=33 Score=29.11 Aligned_cols=92 Identities=13% Similarity=0.265 Sum_probs=49.3
Q ss_pred HhHHHHHH--hCCCcEEEEEECCCChhhHh-hHHHHHHHHHhCCC----eEEEEEECCCC--chhHHHHCCCCcc-cEEE
Q psy5680 64 IDDFKQTI--RGRNPVLAYFFKPSCGFCKQ-LEPKISTVSETTSG----VEFVKINVENG--GGEIAREFEVQAV-PTVI 133 (201)
Q Consensus 64 ~~~~~~~~--~~~~~vvv~f~a~wC~~C~~-~~~~l~~l~~~~~~----~~~~~vd~~~~--~~~l~~~~~v~~~-Pti~ 133 (201)
..++-+.+ .+.++.++-. |.|+.|.. ......++.+.|.+ ++++-.-|--| +..-...+|+.+- +..+
T Consensus 252 a~~IL~slglr~~g~~IisC--PgCgR~~~D~~~la~~vee~~~~~~~PlkIAVmGC~VNgpGEa~~aDIGIaG~~~~~~ 329 (360)
T PRK00366 252 GQEILQSLGLRSRGPEVISC--PTCGRTEFDVIQELAEVEQRLEHIKMPLKVAVMGCVVNGPGEAKEADIGIAGGNPKGP 329 (360)
T ss_pred HHHHHHHcCCccCCCeEEEC--CCCCCCcccHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCchhhCcEeEecCCCceE
Confidence 34444554 3445555432 33655532 23334555555554 66666666422 1233456777654 4688
Q ss_pred EEeCCeEEEEEeCCCCHHHHHHHH
Q psy5680 134 GFRNGDPVDMVVGNADQDVIQTLV 157 (201)
Q Consensus 134 ~~~~G~~v~~~~G~~~~~~l~~~i 157 (201)
+|.+|+.+....+..-.++|.+.|
T Consensus 330 vf~~Gk~v~kv~~~~~~~~l~~~i 353 (360)
T PRK00366 330 VFVDGEKIKTLPEENIVEELEAEI 353 (360)
T ss_pred EEECCEEeeeeChHhHHHHHHHHH
Confidence 889999987766633333333333
No 292
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=57.30 E-value=26 Score=21.61 Aligned_cols=60 Identities=12% Similarity=0.279 Sum_probs=34.3
Q ss_pred EEEECCCChhhHhhHHHHHHHHHhCCCeEEEEEECCCCchhHHHHCCCCcccEEEEEeCCeE
Q psy5680 79 AYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTVIGFRNGDP 140 (201)
Q Consensus 79 v~f~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~l~~~~~v~~~Pti~~~~~G~~ 140 (201)
..|+.+.|+.|.+..-.+....... .+..+.+|.....+++.+......+|.+.. .+|..
T Consensus 2 ~Ly~~~~s~~~~~~~~~l~~~~~~i-~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~-~~g~~ 61 (73)
T cd03049 2 KLLYSPTSPYVRKVRVAAHETGLGD-DVELVLVNPWSDDESLLAVNPLGKIPALVL-DDGEA 61 (73)
T ss_pred EEecCCCCcHHHHHHHHHHHhCCCC-CcEEEEcCcccCChHHHHhCCCCCCCEEEE-CCCCE
Confidence 3577889999998775555421111 145555654332145555556677897754 34533
No 293
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=56.56 E-value=51 Score=22.99 Aligned_cols=49 Identities=16% Similarity=0.233 Sum_probs=35.2
Q ss_pred CCHHHHHHHHHHHHhhhhhccc----cccCCCCccHHHHHHHHhhcceEEEee
Q psy5680 148 ADQDVIQTLVSKLSQKLATHYQ----VDLTTGTPDQVYLIVLLRYDQVYLIVC 196 (201)
Q Consensus 148 ~~~~~l~~~i~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (201)
.+.+++.+.+++.++...++.+ .++.+|++.......+.++.++++|.+
T Consensus 39 ~~~~~~~~~l~~~i~~~~~~~~vivltDl~GGSp~n~a~~~~~~~~~~~vIsG 91 (116)
T TIGR00824 39 ENAETLQEKYNAALADLDTEEEVLFLVDIFGGSPYNAAARIIVDKPHMDVIAG 91 (116)
T ss_pred cCHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCHHHHHHHHHhhcCCEEEEEe
Confidence 6678888888888877654332 278899997666655667778887765
No 294
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=54.97 E-value=51 Score=28.04 Aligned_cols=95 Identities=19% Similarity=0.294 Sum_probs=50.4
Q ss_pred HhHHHHHH--hCCCcEEEEEECCCChhhH-hhHHHHHHHHHhCCC----eEEEEEECCCCchhHHH--HCCCC-ccc-EE
Q psy5680 64 IDDFKQTI--RGRNPVLAYFFKPSCGFCK-QLEPKISTVSETTSG----VEFVKINVENGGGEIAR--EFEVQ-AVP-TV 132 (201)
Q Consensus 64 ~~~~~~~~--~~~~~vvv~f~a~wC~~C~-~~~~~l~~l~~~~~~----~~~~~vd~~~~~~~l~~--~~~v~-~~P-ti 132 (201)
..++-+.+ ...++-+| .=|.|+.|. .+....+++.+.+.+ ++++-+-|--|+|.=++ .||+- +-| ..
T Consensus 252 a~~IL~al~lR~~g~~~I--SCPtCGRt~~Dl~~~~~~ie~~l~~l~~~lkIAVMGCiVNGPGEa~~AD~GiaGgg~g~~ 329 (359)
T PF04551_consen 252 AFEILQALGLRKRGPEII--SCPTCGRTEFDLQELVAEIEERLKHLKKGLKIAVMGCIVNGPGEAKDADIGIAGGGKGKG 329 (359)
T ss_dssp HHHHHHHTTSS-SS-EEE--E----TT--SHHHHHHHHHHHHCCCHHCG-EEEEESSTCCCHHHCTTSSEEEE-E-TTCE
T ss_pred HHHHHHHhCcCcCCceee--eCCCCCCccchHHHHHHHHHHHHhcCCCCceEEEEeeeecCCchhhhCceeeecCCCCeE
Confidence 34444444 33444443 234444442 223334555555554 88888888877544333 45554 334 38
Q ss_pred EEEeCCeEEEEE-eCCCCHHHHHHHHHHH
Q psy5680 133 IGFRNGDPVDMV-VGNADQDVIQTLVSKL 160 (201)
Q Consensus 133 ~~~~~G~~v~~~-~G~~~~~~l~~~i~~~ 160 (201)
.+|++|+.+.+. ....-.+.|.+.|+++
T Consensus 330 ~lf~~g~~v~k~~~ee~~vd~L~~~I~~~ 358 (359)
T PF04551_consen 330 ILFKKGEVVKKVIPEEEIVDELIELIEEH 358 (359)
T ss_dssp EEECTTEEEEEE-CSTCHHHHHHHHHHHH
T ss_pred EEEECCEEEEecCCHHHHHHHHHHHHHhh
Confidence 899999999887 6655556666666654
No 295
>COG3411 Ferredoxin [Energy production and conversion]
Probab=53.17 E-value=38 Score=21.22 Aligned_cols=32 Identities=13% Similarity=0.158 Sum_probs=26.0
Q ss_pred ccEEEEEeCCeEEEEEeCCCCHHHHHHHHHHHHhhh
Q psy5680 129 VPTVIGFRNGDPVDMVVGNADQDVIQTLVSKLSQKL 164 (201)
Q Consensus 129 ~Pti~~~~~G~~v~~~~G~~~~~~l~~~i~~~~~~~ 164 (201)
=|++++|.+| ...+..+.++..+++++++..-
T Consensus 17 gPvl~vYpeg----vWY~~V~p~~a~rIv~~hl~~G 48 (64)
T COG3411 17 GPVLVVYPEG----VWYTRVDPEDARRIVQSHLLGG 48 (64)
T ss_pred CCEEEEecCC----eeEeccCHHHHHHHHHHHHhCC
Confidence 4999999998 4455589999999999998643
No 296
>KOG4277|consensus
Probab=52.99 E-value=68 Score=26.80 Aligned_cols=93 Identities=16% Similarity=0.190 Sum_probs=49.0
Q ss_pred EEEeCCH--hHHHHHHhCCCcEEEEEECCCChhhHhhHHHHHHHHHhCCCeEEEEEECCCCchhHHHHCCCCcccEEEEE
Q psy5680 58 YLIIEKI--DDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTVIGF 135 (201)
Q Consensus 58 v~~l~~~--~~~~~~~~~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~l~~~~~v~~~Pti~~~ 135 (201)
+..| +. ..|.+.-+..++.+|+|....-|--.+ .+......+.-..|....-+ -....-.....|.+.+|
T Consensus 136 I~pi-~enQ~~fehlq~Rhq~ffVf~Gtge~PL~d~---fidAASe~~~~a~FfSasee----VaPe~~~~kempaV~VF 207 (468)
T KOG4277|consen 136 IEPI-NENQIEFEHLQARHQPFFVFFGTGEGPLFDA---FIDAASEKFSVARFFSASEE----VAPEENDAKEMPAVAVF 207 (468)
T ss_pred eeec-ChhHHHHHHHhhccCceEEEEeCCCCcHHHH---HHHHhhhheeeeeeeccccc----cCCcccchhhccceEEE
Confidence 4555 33 345555588999999998665432211 12222222221223221111 11123334567999999
Q ss_pred eCCeEEEEEeCCCCHHHHHHHHHHH
Q psy5680 136 RNGDPVDMVVGNADQDVIQTLVSKL 160 (201)
Q Consensus 136 ~~G~~v~~~~G~~~~~~l~~~i~~~ 160 (201)
++..--.. ...+.+++.+||.+.
T Consensus 208 KDetf~i~--de~dd~dLseWinRE 230 (468)
T KOG4277|consen 208 KDETFEIE--DEGDDEDLSEWINRE 230 (468)
T ss_pred ccceeEEE--ecCchhHHHHHHhHh
Confidence 87643222 225678899998765
No 297
>PRK10387 glutaredoxin 2; Provisional
Probab=52.38 E-value=76 Score=23.99 Aligned_cols=56 Identities=16% Similarity=0.313 Sum_probs=31.0
Q ss_pred EEECCCChhhHhhHHHHHHHHHhCCCeEEEEEECCCCchhHHHHCCCCcccEEEEEeCCeE
Q psy5680 80 YFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTVIGFRNGDP 140 (201)
Q Consensus 80 ~f~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~l~~~~~v~~~Pti~~~~~G~~ 140 (201)
.++.+.|++|.+..-.++...-. +.+..++.... ...........+|+++. .+|..
T Consensus 3 Ly~~~~sp~~~kv~~~L~~~gi~---y~~~~~~~~~~-~~~~~~~p~~~VPvL~~-~~g~~ 58 (210)
T PRK10387 3 LYIYDHCPFCVKARMIFGLKNIP---VELIVLANDDE-ATPIRMIGQKQVPILQK-DDGSY 58 (210)
T ss_pred EEeCCCCchHHHHHHHHHHcCCC---eEEEEcCCCch-hhHHHhcCCcccceEEe-cCCeE
Confidence 45678899999887666554211 34444443333 22223333457898854 34544
No 298
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=52.33 E-value=19 Score=25.42 Aligned_cols=21 Identities=14% Similarity=0.525 Sum_probs=17.9
Q ss_pred EEEEECCCChhhHhhHHHHHH
Q psy5680 78 LAYFFKPSCGFCKQLEPKIST 98 (201)
Q Consensus 78 vv~f~a~wC~~C~~~~~~l~~ 98 (201)
+..|+.|.|..|++....+++
T Consensus 3 itiy~~p~C~t~rka~~~L~~ 23 (117)
T COG1393 3 ITIYGNPNCSTCRKALAWLEE 23 (117)
T ss_pred EEEEeCCCChHHHHHHHHHHH
Confidence 667899999999998877765
No 299
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=51.10 E-value=26 Score=24.55 Aligned_cols=76 Identities=11% Similarity=0.202 Sum_probs=43.9
Q ss_pred CChhhHhhHHHHHHHHHhCCCeEEEEEECCCCchhHHHHCC--CCcccEEEEEeCCeEE---EEEeC---CCCHHHHHHH
Q psy5680 85 SCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFE--VQAVPTVIGFRNGDPV---DMVVG---NADQDVIQTL 156 (201)
Q Consensus 85 wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~l~~~~~--v~~~Pti~~~~~G~~v---~~~~G---~~~~~~l~~~ 156 (201)
.|++|..++-.+...-..-..+.+..|+....-.++....| -++.|++++=.+.... ..+.| ..+.+.|...
T Consensus 23 ~Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~RPR~~vi~llGE~~QslPvLVL~~~~~~~~~~~~~~~~rfi~d~~~I~~~ 102 (112)
T PF11287_consen 23 YCPHCAAIEGLLASFPDLRERLDVRRVDFPRPRQAVIALLGEANQSLPVLVLADGAPSPDDAGSHGGRRFIDDPRRILRY 102 (112)
T ss_pred ECCchHHHHhHHhhChhhhhcccEEEeCCCCchHHHHHHhChhccCCCEEEeCCCCCCcccccccCCeEEeCCHHHHHHH
Confidence 39999888766644322222278899998877234555555 4688998886322111 12222 1355666666
Q ss_pred HHHH
Q psy5680 157 VSKL 160 (201)
Q Consensus 157 i~~~ 160 (201)
|.+.
T Consensus 103 La~r 106 (112)
T PF11287_consen 103 LAER 106 (112)
T ss_pred HHHH
Confidence 6543
No 300
>TIGR00762 DegV EDD domain protein, DegV family. This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each than to most homologs from other species. This suggests both recent paralogy and diversity of function. DegV itself is encoded immediately downstream of DegU, a transcriptional regulator of degradation, but is itself uncharacterized. Crystallography suggested a lipid-binding site, while comparison of the crystal structure to dihydroxyacetone kinase and to a mannose transporter EIIA domain suggests a conserved domain, EDD, with phosphotransferase activity.
Probab=50.53 E-value=40 Score=27.35 Aligned_cols=78 Identities=19% Similarity=0.220 Sum_probs=45.5
Q ss_pred hhHHHHCCCCcccEEEEEeCCeEEEEEeCCCCHHHHHHHHHHHHhhhhhccccccCCCCccHHHHHHHHhhcceEEEeec
Q psy5680 118 GEIAREFEVQAVPTVIGFRNGDPVDMVVGNADQDVIQTLVSKLSQKLATHYQVDLTTGTPDQVYLIVLLRYDQVYLIVCS 197 (201)
Q Consensus 118 ~~l~~~~~v~~~Pti~~~~~G~~v~~~~G~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (201)
++.+++++|.-+|--+.+. |+.-.... ..+.+++.+.+.+.-.. + ....-..+...+.|-..+-.++++..|..|
T Consensus 13 ~~~~~~~~I~vvPl~I~~~-~~~y~D~~-~i~~~~~y~~~~~~~~~-p--~TS~ps~~~~~~~~~~l~~~~~~vi~i~iS 87 (275)
T TIGR00762 13 PELIEEYGITVVPLTVIID-GKTYRDGV-DITPEEFYEKLKESKEL-P--KTSQPSPGEFLELYEKLLEEGDEVLSIHLS 87 (275)
T ss_pred HHHHHHcCCEEEEEEEEEC-CEEeecCC-CCCHHHHHHHHHhcCCC-C--CcCCCCHHHHHHHHHHHHhCCCeEEEEEcC
Confidence 6788999999999887774 43322222 37888888888543110 0 111222334444454444445667777777
Q ss_pred CCC
Q psy5680 198 SGI 200 (201)
Q Consensus 198 ~~~ 200 (201)
||+
T Consensus 88 s~l 90 (275)
T TIGR00762 88 SGL 90 (275)
T ss_pred Cch
Confidence 764
No 301
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=50.39 E-value=1.3e+02 Score=23.87 Aligned_cols=76 Identities=21% Similarity=0.222 Sum_probs=49.6
Q ss_pred EEEEEECCCChhhHhhHHHHHHHHHhCCCeEEEEEECCCCchhHHHHCCCCcccEEEEEeCCeEEEEEeCCCCHHHHHHH
Q psy5680 77 VLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTVIGFRNGDPVDMVVGNADQDVIQTL 156 (201)
Q Consensus 77 vvv~f~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~l~~~~~v~~~Pti~~~~~G~~v~~~~G~~~~~~l~~~ 156 (201)
-+=.|.-..|..|-.+...++.- -.++++.| ++.... +.++-+-+|-++|.+++ +|+. .+.+..+++++...
T Consensus 12 ~VkI~~HktC~ssy~Lf~~L~nk-gll~~Vki--i~a~~p-~f~~~~~~V~SvP~Vf~--DGel--~~~dpVdp~~ies~ 83 (265)
T COG5494 12 EVKIFTHKTCVSSYMLFEYLENK-GLLGKVKI--IDAELP-PFLAFEKGVISVPSVFI--DGEL--VYADPVDPEEIESI 83 (265)
T ss_pred EEEEEEecchHHHHHHHHHHHhc-CCCCCceE--EEcCCC-hHHHhhcceeecceEEE--cCeE--EEcCCCCHHHHHHH
Confidence 34456677898887766555441 01233554 556666 67777778999998766 7876 45666788888777
Q ss_pred HHHH
Q psy5680 157 VSKL 160 (201)
Q Consensus 157 i~~~ 160 (201)
++-.
T Consensus 84 ~~G~ 87 (265)
T COG5494 84 LSGQ 87 (265)
T ss_pred HcCc
Confidence 7653
No 302
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=49.68 E-value=63 Score=25.35 Aligned_cols=78 Identities=18% Similarity=0.301 Sum_probs=46.5
Q ss_pred hHHHHHH-hCCCcEEEEEE-----CCCChhhHhhHHHHHHHHHhC-C-CeEEEEEECCCC--------------------
Q psy5680 65 DDFKQTI-RGRNPVLAYFF-----KPSCGFCKQLEPKISTVSETT-S-GVEFVKINVENG-------------------- 116 (201)
Q Consensus 65 ~~~~~~~-~~~~~vvv~f~-----a~wC~~C~~~~~~l~~l~~~~-~-~~~~~~vd~~~~-------------------- 116 (201)
-.+.++. .....++-.|. ...|+.|..+.-.++.....+ . ++.|+.|.-...
T Consensus 58 v~L~dLF~Gr~qLivyhfM~~p~~~~~C~gCs~~~D~~~g~l~hL~~rd~tfa~vSraP~~~i~afk~rmGW~~pw~Ss~ 137 (211)
T PF05988_consen 58 VSLADLFEGRRQLIVYHFMFGPDWDEGCPGCSFWADHIDGALRHLHARDTTFAVVSRAPLEKIEAFKRRMGWTFPWYSSY 137 (211)
T ss_pred ccHHHHcCCCceEEEEeeccCCCCCCCCCchhhhHhhhhhhHHHHHhCCceEEEEeCCCHHHHHHHHHhcCCCceEEEcC
Confidence 3456666 45555666665 567999999988883333332 2 277776664432
Q ss_pred chhHHHHCCC-----CcccEEEEE-eCCeEEE
Q psy5680 117 GGEIAREFEV-----QAVPTVIGF-RNGDPVD 142 (201)
Q Consensus 117 ~~~l~~~~~v-----~~~Pti~~~-~~G~~v~ 142 (201)
+.++-..|++ ...|.+-+| ++|..|.
T Consensus 138 gs~Fn~D~~~~~~~~~~~~g~svF~Rdg~~Vf 169 (211)
T PF05988_consen 138 GSDFNYDFGVSFDEGGEMPGLSVFLRDGGRVF 169 (211)
T ss_pred CCcccccccceeccCCCceeEEEEEEcCCEEE
Confidence 1233345565 567887777 6665553
No 303
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=47.41 E-value=33 Score=25.66 Aligned_cols=22 Identities=23% Similarity=0.431 Sum_probs=18.1
Q ss_pred hhHHHHCCCCcccEEEEEeCCe
Q psy5680 118 GEIAREFEVQAVPTVIGFRNGD 139 (201)
Q Consensus 118 ~~l~~~~~v~~~Pti~~~~~G~ 139 (201)
...+.++||.++||+++..++.
T Consensus 159 ~~~a~~~gv~g~Ptfvv~~~~~ 180 (193)
T cd03025 159 QKLARELGINGFPTLVLEDDNG 180 (193)
T ss_pred HHHHHHcCCCccCEEEEEeCCe
Confidence 4556789999999999997665
No 304
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=47.17 E-value=1.3e+02 Score=23.05 Aligned_cols=56 Identities=16% Similarity=0.252 Sum_probs=29.4
Q ss_pred EEECCCChhhHhhHHHHHHHHHhCCCeEEEEEECCCCchhHHHHCCCCcccEEEEEeCCeE
Q psy5680 80 YFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTVIGFRNGDP 140 (201)
Q Consensus 80 ~f~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~l~~~~~v~~~Pti~~~~~G~~ 140 (201)
.|+...||+|++..-.+....-. +..+.++.+.. ....+......+|++.. .+|..
T Consensus 2 Ly~~~~sp~~~kvr~~L~~~gl~---~e~~~~~~~~~-~~~~~~np~g~vP~l~~-~~g~~ 57 (209)
T TIGR02182 2 LYIYDHCPFCVRARMIFGLKNIP---VEKHVLLNDDE-ETPIRMIGAKQVPILQK-DDGRA 57 (209)
T ss_pred eecCCCCChHHHHHHHHHHcCCC---eEEEECCCCcc-hhHHHhcCCCCcceEEe-eCCeE
Confidence 35677899999877666553211 33333333232 22333333467897753 35543
No 305
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=44.67 E-value=50 Score=22.61 Aligned_cols=31 Identities=19% Similarity=0.536 Sum_probs=21.3
Q ss_pred EECCCChhhHhhHHHHHHHHHhCCCeEEEEEECCCC
Q psy5680 81 FFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENG 116 (201)
Q Consensus 81 f~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~ 116 (201)
|+.+.|..|++....+++ .++.+-.+|+.+.
T Consensus 1 Y~~~~C~t~rka~~~L~~-----~gi~~~~~d~~k~ 31 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEE-----NGIEYEFIDYKKE 31 (110)
T ss_dssp EE-TT-HHHHHHHHHHHH-----TT--EEEEETTTS
T ss_pred CcCCCCHHHHHHHHHHHH-----cCCCeEeehhhhC
Confidence 678999999999877776 3567777888765
No 306
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=44.15 E-value=83 Score=20.00 Aligned_cols=67 Identities=12% Similarity=0.112 Sum_probs=36.9
Q ss_pred CCCChhhHhhHHHHHHHHHhCCCeEEEEEECCCCchhHHHH---CCCCcccEEEEEeCCeEEEEEeCCCCHHHHHHHHHH
Q psy5680 83 KPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIARE---FEVQAVPTVIGFRNGDPVDMVVGNADQDVIQTLVSK 159 (201)
Q Consensus 83 a~wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~l~~~---~~v~~~Pti~~~~~G~~v~~~~G~~~~~~l~~~i~~ 159 (201)
.+||+.|++.+-.+....-. +....++.... ...... -....+|++.. .+|..+ .+...+.++|++
T Consensus 13 ~~~Sp~~~kv~~~L~~~~i~---~~~~~~~~~~~-~~~~~~~~~~p~~~vP~L~~-~~~~~l------~eS~aI~~yL~~ 81 (84)
T cd03038 13 RAFSPNVWKTRLALNHKGLE---YKTVPVEFPDI-PPILGELTSGGFYTVPVIVD-GSGEVI------GDSFAIAEYLEE 81 (84)
T ss_pred CCcCChhHHHHHHHHhCCCC---CeEEEecCCCc-ccccccccCCCCceeCeEEE-CCCCEE------eCHHHHHHHHHH
Confidence 46889999887666654222 45555664433 222222 23457898743 225432 355667777665
Q ss_pred H
Q psy5680 160 L 160 (201)
Q Consensus 160 ~ 160 (201)
.
T Consensus 82 ~ 82 (84)
T cd03038 82 A 82 (84)
T ss_pred h
Confidence 3
No 307
>PRK13669 hypothetical protein; Provisional
Probab=43.05 E-value=94 Score=20.31 Aligned_cols=56 Identities=13% Similarity=0.128 Sum_probs=37.3
Q ss_pred HHHHHHhCCCeEEEEEECCCCchhHHHHCCCCcccEEEEEeCCeEEEEEeCCCCHHHHHHHHHHHHhhh
Q psy5680 96 ISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTVIGFRNGDPVDMVVGNADQDVIQTLVSKLSQKL 164 (201)
Q Consensus 96 l~~l~~~~~~~~~~~vd~~~~~~~l~~~~~v~~~Pti~~~~~G~~v~~~~G~~~~~~l~~~i~~~~~~~ 164 (201)
++.+ +++|++.+...+|-.. -..|.+ -|- -+-+|+.+ .| .+.+++.+.|.++++..
T Consensus 20 ~~~L-e~dP~~dVie~gCls~-CG~C~~-----~~F--AlVng~~V---~a-~t~eeL~~kI~~~i~e~ 75 (78)
T PRK13669 20 FEKL-EKDPNLDVLEYGCLGY-CGICSE-----GLF--ALVNGEVV---EG-ETPEELVENIYAHLEEN 75 (78)
T ss_pred HHHH-HhCCCceEEEcchhhh-CcCccc-----Cce--EEECCeEe---ec-CCHHHHHHHHHHHHhhc
Confidence 4555 5678888888887766 444422 222 23367554 45 88999999999988763
No 308
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=43.04 E-value=72 Score=26.97 Aligned_cols=95 Identities=17% Similarity=0.212 Sum_probs=51.0
Q ss_pred EEeCCHhHHHHHH--hCCCcEEEEEECCCChhhH-hhHHHHHHHHHhCC---C-eEEEEEECCCCchhHH--HHCCCCcc
Q psy5680 59 LIIEKIDDFKQTI--RGRNPVLAYFFKPSCGFCK-QLEPKISTVSETTS---G-VEFVKINVENGGGEIA--REFEVQAV 129 (201)
Q Consensus 59 ~~l~~~~~~~~~~--~~~~~vvv~f~a~wC~~C~-~~~~~l~~l~~~~~---~-~~~~~vd~~~~~~~l~--~~~~v~~~ 129 (201)
.++....++-+.+ .+.++-+| .=|.|+.|. .+....+++.+.+. . ++++.+-|--|+|.=+ ..+||.+-
T Consensus 238 ~EV~va~~IL~slglr~~g~~ii--SCPtCGR~~~dl~~~~~~ve~~l~~~~~~l~VAVMGCvVNGPGEak~ADiGIagg 315 (346)
T TIGR00612 238 HEVPVAFEILQSLGLRARGVEIV--ACPSCGRTGFDVEKVVRRVQEALFHLKTPLKVAVMGCVVNGPGEAKHADIGISGG 315 (346)
T ss_pred HHHHHHHHHHHHcCCCcCCCeEE--ECCCCCCcCCCHHHHHHHHHHHHhcCCCCCEEEEECceecCCchhhccCeeeecC
Confidence 3333344455555 34444444 446666663 33334455554443 3 7777666665533322 35566543
Q ss_pred --cEEEEEeCCeEEEEEeCCCCHHHHHHHHHH
Q psy5680 130 --PTVIGFRNGDPVDMVVGNADQDVIQTLVSK 159 (201)
Q Consensus 130 --Pti~~~~~G~~v~~~~G~~~~~~l~~~i~~ 159 (201)
-..++|++|+.+....+ +++.+.+.+
T Consensus 316 g~g~~~lF~~G~~~~kv~~----~~~~~~l~~ 343 (346)
T TIGR00612 316 GTGSAILFKRGKPKAKQPE----TDMADELIR 343 (346)
T ss_pred CCCceEEEECCEEeEecCH----HHHHHHHHH
Confidence 35788999988765555 555555543
No 309
>KOG2244|consensus
Probab=42.70 E-value=39 Score=30.53 Aligned_cols=76 Identities=12% Similarity=0.247 Sum_probs=53.1
Q ss_pred EEEeCCHhHHHHHHhCCCcEEEEEECCCChhhHhhHHH-H--HHHHHhCCC-eEEEEEECCCCchhHHH--------HCC
Q psy5680 58 YLIIEKIDDFKQTIRGRNPVLAYFFKPSCGFCKQLEPK-I--STVSETTSG-VEFVKINVENGGGEIAR--------EFE 125 (201)
Q Consensus 58 v~~l~~~~~~~~~~~~~~~vvv~f~a~wC~~C~~~~~~-l--~~l~~~~~~-~~~~~vd~~~~~~~l~~--------~~~ 125 (201)
...- ..+.|+++-++++|+++-..-+.|-.|..|..+ | ++.++.+.+ +.-++||-++- |++-+ ..+
T Consensus 97 wypw-gqeaf~kar~enkpifLsvgystchwchvmekesfeneet~~ilnenfv~ikVDREER-PDVDK~YM~Fv~assg 174 (786)
T KOG2244|consen 97 WYPW-GQEAFNKARAENKPIFLSVGYSTCHWCHVMEKESFENEETGEILNENFVKIKVDREER-PDVDKLYMAFVVASSG 174 (786)
T ss_pred cCcc-hHHHHHHHHhcCCCEEEEcccccchheeeeecccccCHHHHHHHhhhhhhhccChhhc-CchHHHHHHHHHhccC
Confidence 4555 678899998999999999999999999888764 3 445555543 34445554455 54432 446
Q ss_pred CCcccEEEEE
Q psy5680 126 VQAVPTVIGF 135 (201)
Q Consensus 126 v~~~Pti~~~ 135 (201)
-.++|--+|.
T Consensus 175 ~GGWPmsV~L 184 (786)
T KOG2244|consen 175 GGGWPMSVFL 184 (786)
T ss_pred CCCCceeEEe
Confidence 6788887777
No 310
>KOG0911|consensus
Probab=42.43 E-value=88 Score=24.82 Aligned_cols=52 Identities=23% Similarity=0.450 Sum_probs=36.2
Q ss_pred CCCChhhHhhHHHHHHHHHhCCCeEEEEEECCCCchhHHHHCCC-CcccEE-EEEeCCeE
Q psy5680 83 KPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEV-QAVPTV-IGFRNGDP 140 (201)
Q Consensus 83 a~wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~l~~~~~v-~~~Pti-~~~~~G~~ 140 (201)
.|-|+..+++...++.. ++.+...|+-.+ .++.+-.+. ..+||+ -+|-+|+-
T Consensus 151 ~P~CGFS~~~v~iL~~~-----nV~~~~fdIL~D-eelRqglK~fSdWPTfPQlyI~GEF 204 (227)
T KOG0911|consen 151 EPKCGFSRQLVGILQSH-----NVNYTIFDVLTD-EELRQGLKEFSDWPTFPQLYVKGEF 204 (227)
T ss_pred cccccccHHHHHHHHHc-----CCCeeEEeccCC-HHHHHHhhhhcCCCCccceeECCEe
Confidence 45677777777766653 567889999888 777666654 457885 56667844
No 311
>PF08806 Sep15_SelM: Sep15/SelM redox domain; InterPro: IPR014912 Sep15 and SelM are eukaryotic selenoproteins that have a thioredoxin-like domain and a surface accessible active site redox motif []. This suggests that they function as thiol-disulphide isomerases involved in disulphide bond formation in the endoplasmic reticulum []. ; PDB: 2A4H_A 2A2P_A.
Probab=41.33 E-value=48 Score=21.56 Aligned_cols=33 Identities=18% Similarity=0.351 Sum_probs=21.1
Q ss_pred CcccEEEEE-eCCeEEEE--EeCCCCHHHHHHHHHHH
Q psy5680 127 QAVPTVIGF-RNGDPVDM--VVGNADQDVIQTLVSKL 160 (201)
Q Consensus 127 ~~~Pti~~~-~~G~~v~~--~~G~~~~~~l~~~i~~~ 160 (201)
..-|+++++ .+|+++.+ +.+ .+.+++.++|.+.
T Consensus 40 G~~P~L~l~d~~g~~~E~i~i~~-w~~d~i~efL~~k 75 (78)
T PF08806_consen 40 GAPPELVLLDEDGEEVERINIEK-WKTDEIEEFLNEK 75 (78)
T ss_dssp S---EEEEE-SSS--SEEEE-SS-SSHCHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCEEEEEEccc-CCHHHHHHHHHHh
Confidence 456899999 57776553 445 8999999999875
No 312
>cd03062 TRX_Fd_Sucrase TRX-like [2Fe-2S] Ferredoxin (Fd) family, Sucrase subfamily; composed of proteins with similarity to a novel plant enzyme, isolated from potato, which contains a Fd-like domain and exhibits sucrolytic activity. The putative active site of the Fd-like domain of the enzyme contains two cysteines and two histidines for possible binding to iron-sulfur clusters, compared to four cysteines present in the active site of Fd.
Probab=40.54 E-value=58 Score=21.93 Aligned_cols=31 Identities=19% Similarity=0.357 Sum_probs=25.3
Q ss_pred ccEEEEEe--CCeEEEEEeCCCCHHHHHHHHHHHHhh
Q psy5680 129 VPTVIGFR--NGDPVDMVVGNADQDVIQTLVSKLSQK 163 (201)
Q Consensus 129 ~Pti~~~~--~G~~v~~~~G~~~~~~l~~~i~~~~~~ 163 (201)
=|++++|+ +| ...|..+++++...|++++..
T Consensus 53 gp~vvvyP~~~g----~wy~~v~p~~v~~Iv~~hl~~ 85 (97)
T cd03062 53 AGNVIIYPKGDG----IWYGRVTPEHVPPIVDRLILG 85 (97)
T ss_pred CCEEEEEeCCCe----eEEeecCHHHHHHHHHHHhcC
Confidence 48999998 65 556668999999999998754
No 313
>PRK10026 arsenate reductase; Provisional
Probab=39.71 E-value=39 Score=24.70 Aligned_cols=99 Identities=14% Similarity=0.215 Sum_probs=51.5
Q ss_pred EEEEECCCChhhHhhHHHHHHHHHhCCCeEEEEEECCCC--c----hhHHHHCCCCcccEEEEE-eCCeEEE----EEeC
Q psy5680 78 LAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENG--G----GEIAREFEVQAVPTVIGF-RNGDPVD----MVVG 146 (201)
Q Consensus 78 vv~f~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~--~----~~l~~~~~v~~~Pti~~~-~~G~~v~----~~~G 146 (201)
+..|+-+.|..|++....|++- ++.|-.+|+-+. + ..+.++++ .++--++ ..|..-. ...+
T Consensus 4 i~iY~~p~Cst~RKA~~wL~~~-----gi~~~~~d~~~~ppt~~eL~~~l~~~g---~~~~~lint~~~~yr~L~~~~~~ 75 (141)
T PRK10026 4 ITIYHNPACGTSRNTLEMIRNS-----GTEPTIIHYLETPPTRDELVKLIADMG---ISVRALLRKNVEPYEELGLAEDK 75 (141)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-----CCCcEEEeeeCCCcCHHHHHHHHHhCC---CCHHHHHHcCCchHHHcCCCccC
Confidence 5688999999999988777653 455555665443 1 12333433 3332333 2222111 1122
Q ss_pred CCCHHHHHHHHHHH---HhhhhhccccccCCCCccHHHHHHH
Q psy5680 147 NADQDVIQTLVSKL---SQKLATHYQVDLTTGTPDQVYLIVL 185 (201)
Q Consensus 147 ~~~~~~l~~~i~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (201)
++.+++.+++.++ +.+..-..+...--+++.+.++..|
T Consensus 76 -ls~~e~l~ll~~~P~LIKRPIi~~~~~a~i~Rp~e~v~~~l 116 (141)
T PRK10026 76 -FTDDQLIDFMLQHPILINRPIVVTPLGTRLCRPSEVVLEIL 116 (141)
T ss_pred -CCHHHHHHHHHhCccceeCcEEEcCCCeEEECCHHHHHHHh
Confidence 5566666666653 2222222222233566777776666
No 314
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=39.67 E-value=22 Score=23.77 Aligned_cols=16 Identities=38% Similarity=0.758 Sum_probs=14.2
Q ss_pred HhhcceEEEeecCCCC
Q psy5680 186 LRYDQVYLIVCSSGIR 201 (201)
Q Consensus 186 ~~~~~~~~~~~~~~~~ 201 (201)
...+..|.++|.+|.|
T Consensus 58 ~~~~~~ivv~C~~G~r 73 (110)
T COG0607 58 LPDDDPIVVYCASGVR 73 (110)
T ss_pred cCCCCeEEEEeCCCCC
Confidence 6788999999999986
No 315
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=39.63 E-value=81 Score=19.55 Aligned_cols=56 Identities=18% Similarity=0.194 Sum_probs=34.3
Q ss_pred EEECCCChhhHhhHHHHHHHHHhCCCeEEEEEECC---CCchhHHHHCCCCcccEEEEEeCCeE
Q psy5680 80 YFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVE---NGGGEIAREFEVQAVPTVIGFRNGDP 140 (201)
Q Consensus 80 ~f~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~---~~~~~l~~~~~v~~~Pti~~~~~G~~ 140 (201)
.|+.+.|+.|.+..-.++...- .+.+..+|.. .. +++.+..-...+|++..- +|..
T Consensus 3 Ly~~~~~~~~~~~~~~l~~~gi---~~~~~~v~~~~~~~~-~~~~~~nP~~~vP~L~~~-~g~~ 61 (75)
T cd03044 3 LYTYPGNPRSLKILAAAKYNGL---DVEIVDFQPGKENKT-PEFLKKFPLGKVPAFEGA-DGFC 61 (75)
T ss_pred EecCCCCccHHHHHHHHHHcCC---ceEEEecccccccCC-HHHHHhCCCCCCCEEEcC-CCCE
Confidence 5677888889877666654311 1566666664 23 455555566788998652 3543
No 316
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=39.56 E-value=23 Score=28.62 Aligned_cols=45 Identities=20% Similarity=0.244 Sum_probs=24.7
Q ss_pred EeCCCCHHHHHHHHHHHHhhhhhccccccCCCCccHHHHHHHHhhcceEEEeecCCCC
Q psy5680 144 VVGNADQDVIQTLVSKLSQKLATHYQVDLTTGTPDQVYLIVLLRYDQVYLIVCSSGIR 201 (201)
Q Consensus 144 ~~G~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (201)
+....+.+.|-.||+..-.....-.......| .+..||||+||+|
T Consensus 94 ~~~~r~l~nL~~fLk~~~~~~~~l~~~~~~~g-------------sP~~lvvs~SalR 138 (252)
T PF14617_consen 94 FTKPRTLDNLPSFLKQFSPKKKKLSKKPKEKG-------------SPHVLVVSSSALR 138 (252)
T ss_pred cCCCcccchHHHHHHHhccchhhhhhcccCCC-------------CCEEEEEcchHHH
Confidence 34445667778887654322111111112233 3458999999987
No 317
>PRK10853 putative reductase; Provisional
Probab=39.41 E-value=36 Score=23.96 Aligned_cols=34 Identities=9% Similarity=0.196 Sum_probs=24.8
Q ss_pred EEEEECCCChhhHhhHHHHHHHHHhCCCeEEEEEECCCC
Q psy5680 78 LAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENG 116 (201)
Q Consensus 78 vv~f~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~ 116 (201)
+..|+-+.|..|++....|++- ++.+-.+|+-+.
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~-----~i~~~~~d~~k~ 35 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQ-----GIDYRFHDYRVD 35 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHc-----CCCcEEeehccC
Confidence 4578899999999988777652 555666666544
No 318
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=38.67 E-value=46 Score=23.74 Aligned_cols=104 Identities=13% Similarity=0.080 Sum_probs=53.2
Q ss_pred EEEEEECCCChhhHhhHHHHHHHHHhCCCeEEEEEECCCC--c----hhHHHHCCCCcccEEEEE-eCCeEEE---EEeC
Q psy5680 77 VLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENG--G----GEIAREFEVQAVPTVIGF-RNGDPVD---MVVG 146 (201)
Q Consensus 77 vvv~f~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~--~----~~l~~~~~v~~~Pti~~~-~~G~~v~---~~~G 146 (201)
.+..|+-+.|..|++....|++- ++.+-.+|+-+. + ..+..++++. -++ +.|.... .-..
T Consensus 2 ~i~iY~~p~Cst~RKA~~~L~~~-----gi~~~~~d~~~~p~t~~eL~~~l~~~g~~-----~lin~~~~~~r~l~~~~~ 71 (126)
T TIGR01616 2 TIIFYEKPGCANNARQKAALKAS-----GHDVEVQDILKEPWHADTLRPYFGNKPVG-----SWFNRAAPRVKSGEVNPD 71 (126)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHC-----CCCcEEEeccCCCcCHHHHHHHHHHcCHH-----HHHhccchHhhhCCCCcc
Confidence 45678899999999988777663 555555555443 1 1233333211 222 2222110 0011
Q ss_pred CCCHHHHHHHHHHH---HhhhhhccccccCCCCccHHHHHHHHhhcc
Q psy5680 147 NADQDVIQTLVSKL---SQKLATHYQVDLTTGTPDQVYLIVLLRYDQ 190 (201)
Q Consensus 147 ~~~~~~l~~~i~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (201)
.++.+++.+.+.++ +.+..-..+....-|.+++.+.+.|-..++
T Consensus 72 ~ls~~e~i~lm~~~P~LIKRPIi~~~~~~~iGf~~e~~~~~l~~~~~ 118 (126)
T TIGR01616 72 SIDEASALALMVSDPLLIRRPLMDLGGIRCAGFDREPVLSWIGLQTQ 118 (126)
T ss_pred cCCHHHHHHHHHhCcCeEeCCEEEECCEEEEcCCHHHHHHHhCCCCC
Confidence 24556666666653 333322333334567777777665544443
No 319
>PF00352 TBP: Transcription factor TFIID (or TATA-binding protein, TBP); InterPro: IPR000814 The TATA-box binding protein (TBP) is required for the initiation of transcription by RNA polymerases I, II and III, from promoters with or without a TATA box [, ]. TBP associates with a host of factors, including the general transcription factors TFIIA, -B, -D, -E, and -H, to form huge multi-subunit pre-initiation complexes on the core promoter. Through its association with different transcription factors, TBP can initiate transcription from different RNA polymerases. There are several related TBPs, including TBP-like (TBPL) proteins []. The C-terminal core of TBP (~180 residues) is highly conserved and contains two 77-amino acid repeats that produce a saddle-shaped structure that straddles the DNA; this region binds to the TATA box and interacts with transcription factors and regulatory proteins []. By contrast, the N-terminal region varies in both length and sequence.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0006367 transcription initiation from RNA polymerase II promoter; PDB: 1D3U_A 1PCZ_B 1AIS_A 1NGM_A 1TBP_A 1TBA_B 1YTB_A 1RM1_A 1YTF_A 1NH2_A ....
Probab=37.83 E-value=82 Score=20.57 Aligned_cols=63 Identities=16% Similarity=0.264 Sum_probs=37.9
Q ss_pred HHHHHHHhCCCeEEEEEECCCCchhHHHHCCCCcccEEEEEeCCeEEEEEeCCCCHHHHHHHHHHHHhhh
Q psy5680 95 KISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTVIGFRNGDPVDMVVGNADQDVIQTLVSKLSQKL 164 (201)
Q Consensus 95 ~l~~l~~~~~~~~~~~vd~~~~~~~l~~~~~v~~~Pti~~~~~G~~v~~~~G~~~~~~l~~~i~~~~~~~ 164 (201)
.|.+++..+++. ..|-+.. +.+.-++. ..-.++.+|..|+. ...|..+.+++.+.+++.+.-+
T Consensus 20 dL~~la~~~~~~---~YePe~f-pgl~~r~~-~p~~t~~IF~sGki--~itGaks~~~~~~a~~~i~~~L 82 (86)
T PF00352_consen 20 DLEELAEELENV---EYEPERF-PGLIYRLR-NPKATVLIFSSGKI--VITGAKSEEEAKKAIEKILPIL 82 (86)
T ss_dssp -HHHHHHHSTTE---EEETTTE-SSEEEEET-TTTEEEEEETTSEE--EEEEESSHHHHHHHHHHHHHHH
T ss_pred CHHHHHhhccCc---EEeeccC-CeEEEeec-CCcEEEEEEcCCEE--EEEecCCHHHHHHHHHHHHHHH
Confidence 456666666443 2232323 33322222 12468899999987 4678788999988888876544
No 320
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=35.08 E-value=2.3e+02 Score=22.51 Aligned_cols=64 Identities=13% Similarity=0.202 Sum_probs=39.4
Q ss_pred CCChhhHhhHHHHHHHHHhCCC--eEEEEEECCCCchhHHHHCCCCcccEEEEEeCCeEEEEEeCCCCHHHHHHHHHHH
Q psy5680 84 PSCGFCKQLEPKISTVSETTSG--VEFVKINVENGGGEIAREFEVQAVPTVIGFRNGDPVDMVVGNADQDVIQTLVSKL 160 (201)
Q Consensus 84 ~wC~~C~~~~~~l~~l~~~~~~--~~~~~vd~~~~~~~l~~~~~v~~~Pti~~~~~G~~v~~~~G~~~~~~l~~~i~~~ 160 (201)
.-|++|++..-.+.. ++ +.+..+|.....+++.+..-...+|++.- +|..+ .+...|.++|.+.
T Consensus 17 ~~cp~~~rv~i~L~e-----kgi~~e~~~vd~~~~~~~fl~inP~g~vPvL~~--~g~~l------~ES~aI~eYL~e~ 82 (236)
T TIGR00862 17 GNCPFSQRLFMILWL-----KGVVFNVTTVDLKRKPEDLQNLAPGTHPPFLTY--NTEVK------TDVNKIEEFLEET 82 (236)
T ss_pred CCCHhHHHHHHHHHH-----cCCCcEEEEECCCCCCHHHHHHCcCCCCCEEEE--CCEEe------ecHHHHHHHHHHH
Confidence 468999988866665 34 67788887665245555445567998864 55443 2334455555444
No 321
>COG1307 DegV Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.02 E-value=1.2e+02 Score=24.95 Aligned_cols=39 Identities=10% Similarity=0.114 Sum_probs=24.9
Q ss_pred CCCCchhHHHHCCCCcccEEEEEeCCeEEEEEeCCCCHHHHH
Q psy5680 113 VENGGGEIAREFEVQAVPTVIGFRNGDPVDMVVGNADQDVIQ 154 (201)
Q Consensus 113 ~~~~~~~l~~~~~v~~~Pti~~~~~G~~v~~~~G~~~~~~l~ 154 (201)
++-. +++.++++|..+|--+.+.++ . .......+.+++.
T Consensus 11 ~dl~-~~~~~~~~I~vlPL~V~~~g~-~-y~D~~~l~~~~~~ 49 (282)
T COG1307 11 ADLP-PELAEKLDITVLPLSVIIDGE-S-YFDGVELSPDQFY 49 (282)
T ss_pred CCCC-HHHHHhCCeEEEeEEEEECCE-E-eeccccCCHHHHH
Confidence 3444 788999999999987777543 2 2222235666633
No 322
>PF07700 HNOB: Heme NO binding; InterPro: IPR011644 This ligand-binding domain is found in soluble guanylate cyclases. In soluble guanylate cyclases this domain binds heme via a covalent linkage to histidine []. Soluble guanylate cyclases are nitric oxide-responsive signaling proteins.; GO: 0020037 heme binding; PDB: 3TFE_A 2O0C_B 3TFA_A 2O09_B 2O0G_B 3L6J_A 3TFG_B 3TF8_A 3TFF_A 3TF9_B ....
Probab=34.80 E-value=1e+02 Score=22.92 Aligned_cols=42 Identities=17% Similarity=0.219 Sum_probs=34.7
Q ss_pred CCCcEEEEEECCCChhhHhhHHHHHHHHHhCCC--eEEEEEECC
Q psy5680 73 GRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG--VEFVKINVE 114 (201)
Q Consensus 73 ~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~--~~~~~vd~~ 114 (201)
.++.+.+.++++.++.|.-+.-.++.+++.|.+ +.+-.+++.
T Consensus 126 ~~~~l~l~Y~S~R~gl~~~~~Gli~g~A~~f~~~~v~i~~~~~~ 169 (171)
T PF07700_consen 126 DDNELTLHYRSPRPGLCPYVIGLIRGAAKHFFELDVEIEHVECM 169 (171)
T ss_dssp ETTEEEEEEEESSSSTHHHHHHHHHHHHHHTTEEEEEEEEEECC
T ss_pred CCCEEEEEEECCCcCHHHHHHHHHHHHHHHhCCCCeEEEEeccc
Confidence 466789999999999999999999999999987 555555543
No 323
>PF07293 DUF1450: Protein of unknown function (DUF1450); InterPro: IPR009910 This entry consists of several hypothetical bacterial proteins of around 80 residues in length representing two families. Members contain four highly conserved cysteine residues and their function is unknown.
Probab=33.80 E-value=1.3e+02 Score=19.66 Aligned_cols=59 Identities=7% Similarity=0.105 Sum_probs=37.6
Q ss_pred HHHHHHHHHhCCCeEEEEEECCCCchhHHHHCCCCcccEEEEEeCCeEEEEEeCCCCHHHHHHHHHHHHhhh
Q psy5680 93 EPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTVIGFRNGDPVDMVVGNADQDVIQTLVSKLSQKL 164 (201)
Q Consensus 93 ~~~l~~l~~~~~~~~~~~vd~~~~~~~l~~~~~v~~~Pti~~~~~G~~v~~~~G~~~~~~l~~~i~~~~~~~ 164 (201)
...+++|. +.+++.+...+|-.. -..|.+ -| +.++ +|+.+ .| .+.+++.+.|.+.+++.
T Consensus 17 ~~~~~~Le-~~p~~~Vie~gCl~~-Cg~C~~-----~p-FAlV-nG~~V---~A-~t~eeL~~kI~~~i~e~ 75 (78)
T PF07293_consen 17 DQVYEKLE-KDPDIDVIEYGCLSY-CGPCAK-----KP-FALV-NGEIV---AA-ETAEELLEKIKEKIEEN 75 (78)
T ss_pred HHHHHHHh-cCCCccEEEcChhhh-CcCCCC-----Cc-cEEE-CCEEE---ec-CCHHHHHHHHHHHHhcc
Confidence 33456665 457788878887766 344321 22 3333 67554 45 88999999999988754
No 324
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=33.12 E-value=1.2e+02 Score=20.27 Aligned_cols=34 Identities=12% Similarity=0.234 Sum_probs=20.8
Q ss_pred CeEEEEEECCCCchhHHHHC----C----CCcccEEEEEeCCeEE
Q psy5680 105 GVEFVKINVENGGGEIAREF----E----VQAVPTVIGFRNGDPV 141 (201)
Q Consensus 105 ~~~~~~vd~~~~~~~l~~~~----~----v~~~Pti~~~~~G~~v 141 (201)
++.|-.+|++.+ ++..+.+ + -..+|.+++ +|+.+
T Consensus 30 ~I~f~eiDI~~d-~~~r~em~~~~~~~~g~~tvPQIFi--~~~~i 71 (92)
T cd03030 30 KIEFEEVDISMN-EENRQWMRENVPNENGKPLPPQIFN--GDEYC 71 (92)
T ss_pred CCceEEEecCCC-HHHHHHHHHhcCCCCCCCCCCEEEE--CCEEe
Confidence 488999999877 5544332 2 345666654 55444
No 325
>PF02645 DegV: Uncharacterised protein, DegV family COG1307; InterPro: IPR003797 This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each other than to most homologs from other species. This suggests both recent paralogy and diversity of function.; PDB: 2DT8_A 3LUP_A 3NYI_B 3PL5_A 1PZX_B 1MGP_A 1VPV_B 3FYS_A 3EGL_C 3JR7_A ....
Probab=32.68 E-value=1.4e+02 Score=24.26 Aligned_cols=77 Identities=19% Similarity=0.304 Sum_probs=42.3
Q ss_pred hhHHHHCCCCcccEEEEEeCCeEEEEEeC-CCCHHHHHHHHHHHHhhhhhccccccCCCCccHHHHHHHHh-hcceEEEe
Q psy5680 118 GEIAREFEVQAVPTVIGFRNGDPVDMVVG-NADQDVIQTLVSKLSQKLATHYQVDLTTGTPDQVYLIVLLR-YDQVYLIV 195 (201)
Q Consensus 118 ~~l~~~~~v~~~Pti~~~~~G~~v~~~~G-~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 195 (201)
+++.++++|..+|--+.+.+ +. ..+| ..+.+++.+.+.+.-... . +..-..+...+.|-..+.. ++++.-|.
T Consensus 14 ~~~~~~~~i~vvPl~i~~~~-~~--y~D~~~i~~~efy~~l~~~~~~p-~--TS~ps~~~~~~~f~~~~~~gyd~ii~i~ 87 (280)
T PF02645_consen 14 PELAEEYGIYVVPLNIIIDG-KE--YRDGVDISPEEFYEKLRESGEIP-K--TSQPSPGEFEEAFEKLLEEGYDEIIVIT 87 (280)
T ss_dssp HHHHHHTTEEEE--EEEETT-EE--EETTTTSCHHHHHHHHHHTTSEE-E--EE---HHHHHHHHHHHHHTTTSEEEEEE
T ss_pred HHHHHhCCeEEEeEEEecCC-eE--EecCCCCCHHHHHHHHHhcCCCc-e--ecCCCHHHHHHHHHHHHHCCCCeEEEEe
Confidence 67889999999998888754 22 3344 579999998886642211 1 1112233334444442332 34477777
Q ss_pred ecCCC
Q psy5680 196 CSSGI 200 (201)
Q Consensus 196 ~~~~~ 200 (201)
.|||+
T Consensus 88 iSs~L 92 (280)
T PF02645_consen 88 ISSGL 92 (280)
T ss_dssp S-TTT
T ss_pred CCcch
Confidence 77775
No 326
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=32.58 E-value=1.2e+02 Score=18.63 Aligned_cols=70 Identities=11% Similarity=0.156 Sum_probs=41.1
Q ss_pred EEEECCCChhhHhhHHHHHHHHHhCCCeEEEEEECCCC---chhHHHHCCCCcccEEEEEeCCeEEEEEeCCCCHHHHHH
Q psy5680 79 AYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENG---GGEIAREFEVQAVPTVIGFRNGDPVDMVVGNADQDVIQT 155 (201)
Q Consensus 79 v~f~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~---~~~l~~~~~v~~~Pti~~~~~G~~v~~~~G~~~~~~l~~ 155 (201)
..|+.+.|+.|++..-.++...-. +....++.... .+++........+|++.. +|..+ .....+..
T Consensus 2 ~ly~~~~s~~~~~v~~~l~~~g~~---~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~--~~~~l------~eS~aI~~ 70 (76)
T cd03050 2 KLYYDLMSQPSRAVYIFLKLNKIP---FEECPIDLRKGEQLTPEFKKINPFGKVPAIVD--GDFTL------AESVAILR 70 (76)
T ss_pred EEeeCCCChhHHHHHHHHHHcCCC---cEEEEecCCCCCcCCHHHHHhCcCCCCCEEEE--CCEEE------EcHHHHHH
Confidence 467788899998877666654222 45555665332 135555666778998863 55432 33345555
Q ss_pred HHHH
Q psy5680 156 LVSK 159 (201)
Q Consensus 156 ~i~~ 159 (201)
+|.+
T Consensus 71 Yl~~ 74 (76)
T cd03050 71 YLAR 74 (76)
T ss_pred HHHh
Confidence 5543
No 327
>TIGR02743 TraW type-F conjugative transfer system protein TraW. This protein is an essential component of the F-type conjugative transfer sytem for plasmid DNA transfer and has been shown to be localized to the periplasm.
Probab=32.17 E-value=91 Score=24.30 Aligned_cols=38 Identities=16% Similarity=0.501 Sum_probs=26.3
Q ss_pred HHHHHHhCCC-eEEEEEECCCCchhHHHHCCCCcccEEEEEeCCeE
Q psy5680 96 ISTVSETTSG-VEFVKINVENGGGEIAREFEVQAVPTVIGFRNGDP 140 (201)
Q Consensus 96 l~~l~~~~~~-~~~~~vd~~~~~~~l~~~~~v~~~Pti~~~~~G~~ 140 (201)
+.++.+.++. +-| |.. ..+.++|+|..+|+++. .+|+.
T Consensus 158 ~~~l~~~l~~~vYf-----dQ~-g~Lt~rF~I~~VPavV~-q~g~~ 196 (202)
T TIGR02743 158 VNELEKRLDSRIYF-----DQH-GKLTQKFGIKHVPARVS-QEGLR 196 (202)
T ss_pred HHHHHHHhCCceEE-----cCC-chHhhccCceeeceEEE-ecCCE
Confidence 4555666654 333 445 67999999999999986 45554
No 328
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=31.72 E-value=90 Score=23.16 Aligned_cols=32 Identities=13% Similarity=0.365 Sum_probs=24.9
Q ss_pred EEECCCChhhHhhHHHHHHHHHhCCC-eEEEEE
Q psy5680 80 YFFKPSCGFCKQLEPKISTVSETTSG-VEFVKI 111 (201)
Q Consensus 80 ~f~a~wC~~C~~~~~~l~~l~~~~~~-~~~~~v 111 (201)
+|+..-||.|....+.++++...++- +.+..+
T Consensus 3 ~~~D~~cP~cy~~~~~l~~~~~~~~~~i~~~p~ 35 (192)
T cd03022 3 FYFDFSSPYSYLAHERLPALAARHGATVRYRPI 35 (192)
T ss_pred EEEeCCChHHHHHHHHHHHHHHHhCCeeEEeee
Confidence 56677899999999999999988864 444333
No 329
>PRK11752 putative S-transferase; Provisional
Probab=31.55 E-value=1.7e+02 Score=23.37 Aligned_cols=56 Identities=7% Similarity=0.133 Sum_probs=37.1
Q ss_pred EEEECCCChhhHhhHHHHHHH-HHhCCC--eEEEEEECCCC---chhHHHHCCCCcccEEEE
Q psy5680 79 AYFFKPSCGFCKQLEPKISTV-SETTSG--VEFVKINVENG---GGEIAREFEVQAVPTVIG 134 (201)
Q Consensus 79 v~f~a~wC~~C~~~~~~l~~l-~~~~~~--~~~~~vd~~~~---~~~l~~~~~v~~~Pti~~ 134 (201)
+.+|..+|+.|++..-.++++ +...++ +.++.+|.... ++++.+..-...+|+++.
T Consensus 45 ~~Ly~~~s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~~~e~~~iNP~GkVP~Lv~ 106 (264)
T PRK11752 45 LQLYSLGTPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQFSSGFVEINPNSKIPALLD 106 (264)
T ss_pred eEEecCCCCchHHHHHHHHHHHhccCCCCceEEEEecCccccccCHHHHhhCCCCCCCEEEe
Confidence 444456699999988888874 444544 67777776432 145665555667999965
No 330
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=31.43 E-value=2.1e+02 Score=20.88 Aligned_cols=65 Identities=15% Similarity=0.322 Sum_probs=46.3
Q ss_pred CCCcEEEEEECCCChhhHhhHHHHHHHHHhCCC-eEEEEEECCCCchhHHHHCCCCcc-c-EEEEEeCCeE
Q psy5680 73 GRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENGGGEIAREFEVQAV-P-TVIGFRNGDP 140 (201)
Q Consensus 73 ~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~-~~~~~vd~~~~~~~l~~~~~v~~~-P-ti~~~~~G~~ 140 (201)
.+++-.|.+|---|+-|-.....+.+. ..++ +.|+.+.-+.. ..+.+..++..- + ++++.++|+.
T Consensus 5 ~~~p~~vvlyDG~C~lC~~~vrfLi~~--D~~~~i~f~~~q~e~g-~~~l~~~~l~~~~~~s~~~~~~g~~ 72 (137)
T COG3011 5 MKKPDLVVLYDGVCPLCDGWVRFLIRR--DQGGRIRFAALQSEPG-QALLEAAGLDPEDVDSVLLVEAGQL 72 (137)
T ss_pred CCCCCEEEEECCcchhHHHHHHHHHHh--ccCCcEEEEeccCchh-hhHHhhcCCChhhhheeeEecCCce
Confidence 467788999999999999977666553 2333 88888887766 777888877654 4 4555566654
No 331
>KOG0852|consensus
Probab=30.58 E-value=2.5e+02 Score=21.57 Aligned_cols=88 Identities=18% Similarity=0.224 Sum_probs=50.9
Q ss_pred CCCcEEEEEE-CCCChhhHhhHHHHHHHHHhCCC--eEEEEEECCCC---------------------------chhHHH
Q psy5680 73 GRNPVLAYFF-KPSCGFCKQLEPKISTVSETTSG--VEFVKINVENG---------------------------GGEIAR 122 (201)
Q Consensus 73 ~~~~vvv~f~-a~wC~~C~~~~~~l~~l~~~~~~--~~~~~vd~~~~---------------------------~~~l~~ 122 (201)
.++.|++.|| .++---|-...-.+...+.+|.. ..++.+.+|.. +.++++
T Consensus 32 ~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~n~eVig~S~DS~fshlAW~ntprk~gGlg~~~iPllsD~~~~Isr 111 (196)
T KOG0852|consen 32 KGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKLNTEVLGISTDSVFSHLAWINTPRKQGGLGPLNIPLLSDLNHEISR 111 (196)
T ss_pred cccEEEEEecCCceeeECchhhhhhhhhHHHHHhcCCeEEEEeccchhhhhhHhcCchhhCCcCccccceeeccchhhHH
Confidence 6788888888 34433443444445555555543 55555555543 378889
Q ss_pred HCCCC----cccE--EEEE-eCCeEEE-----EEeCCCCHHHHHHHHHHHH
Q psy5680 123 EFEVQ----AVPT--VIGF-RNGDPVD-----MVVGNADQDVIQTLVSKLS 161 (201)
Q Consensus 123 ~~~v~----~~Pt--i~~~-~~G~~v~-----~~~G~~~~~~l~~~i~~~~ 161 (201)
.||+- +++- ++++ ++|-..+ --.| .+.++....++...
T Consensus 112 dyGvL~~~~G~~lRglfIId~~gi~R~it~NDlpvg-RSVdE~lRLvqAfQ 161 (196)
T KOG0852|consen 112 DYGVLKEDEGIALRGLFIIDPDGILRQITINDLPVG-RSVDETLRLVQAFQ 161 (196)
T ss_pred hcCceecCCCcceeeeEEEccccceEEeeecccCCC-ccHHHHHHHHHHHh
Confidence 99874 4443 4444 5553322 1235 78888888887653
No 332
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=29.96 E-value=1.3e+02 Score=18.24 Aligned_cols=59 Identities=19% Similarity=0.264 Sum_probs=32.1
Q ss_pred CCCChhhHhhHHHHHHHHHhCCCeEEEEEECCCCchhHHHHCCCCcccEEEEEeCCeEEEEEeCCCCHHHHHHHHHH
Q psy5680 83 KPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTVIGFRNGDPVDMVVGNADQDVIQTLVSK 159 (201)
Q Consensus 83 a~wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~l~~~~~v~~~Pti~~~~~G~~v~~~~G~~~~~~l~~~i~~ 159 (201)
.++|+.|.+..-.+.. .++.+-.++++.. . .-.-..+|++.. +|+.+ .+...+.++|++
T Consensus 13 ~s~sp~~~~v~~~L~~-----~~i~~~~~~~~~~-~----~~p~g~vP~l~~--~g~~l------~es~~I~~yL~~ 71 (72)
T cd03054 13 PSLSPECLKVETYLRM-----AGIPYEVVFSSNP-W----RSPTGKLPFLEL--NGEKI------ADSEKIIEYLKK 71 (72)
T ss_pred CCCCHHHHHHHHHHHh-----CCCceEEEecCCc-c----cCCCcccCEEEE--CCEEE------cCHHHHHHHHhh
Confidence 3589999998866655 3433334444332 1 112346888764 45432 233566666543
No 333
>COG2101 SPT15 TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription]
Probab=29.42 E-value=1.8e+02 Score=22.17 Aligned_cols=35 Identities=26% Similarity=0.442 Sum_probs=29.5
Q ss_pred cEEEEEeCCeEEEEEeCCCCHHHHHHHHHHHHhhhhh
Q psy5680 130 PTVIGFRNGDPVDMVVGNADQDVIQTLVSKLSQKLAT 166 (201)
Q Consensus 130 Pti~~~~~G~~v~~~~G~~~~~~l~~~i~~~~~~~~~ 166 (201)
+++++|+.|+. ...|..+.+++...+++.+..+.+
T Consensus 54 ~a~LIF~SGK~--VcTGaKs~ed~~~av~~~~~~L~~ 88 (185)
T COG2101 54 TAALIFRSGKV--VCTGAKSVEDVHRAVKKLAKKLKD 88 (185)
T ss_pred ceEEEEecCcE--EEeccCcHHHHHHHHHHHHHHHHh
Confidence 36778899987 468989999999999999888777
No 334
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=29.14 E-value=2.9e+02 Score=21.76 Aligned_cols=67 Identities=10% Similarity=0.015 Sum_probs=42.4
Q ss_pred CCcEEEEEECCCChhhHhhHHHHHHHHHhCCCeEEEEEECCCCchhHHH-HCCCCcccEEEEEeCCeEE
Q psy5680 74 RNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAR-EFEVQAVPTVIGFRNGDPV 141 (201)
Q Consensus 74 ~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~l~~-~~~v~~~Pti~~~~~G~~v 141 (201)
++..+..=|||+.|.-..|...-.++.++--++.++.++.-.. ++... --++..+|...+..+|...
T Consensus 4 GrLkIflG~apGVGKTy~ML~ea~~l~~~G~DVViG~vethgR-~et~~l~~gLe~iP~~~i~y~g~~~ 71 (211)
T PF02702_consen 4 GRLKIFLGAAPGVGKTYAMLQEAHRLKEQGVDVVIGYVETHGR-PETEALLEGLEVIPRKKIEYRGRTL 71 (211)
T ss_dssp --EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEE---TT--HHHHHHHCTS-B---EEEEETTEEE
T ss_pred ccEEEEEecCCCCCHHHHHHHHHHHHHHCCCCEEEEEecCCCc-HHHHHHHcCCCcCCCeeEeeCCEec
Confidence 4555666679999999999998888877766788888887766 66543 4578899998888788654
No 335
>TIGR03765 ICE_PFL_4695 integrating conjugative element protein, PFL_4695 family. This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=28.91 E-value=41 Score=23.29 Aligned_cols=37 Identities=11% Similarity=0.357 Sum_probs=24.4
Q ss_pred HHHHHHHHhCCCeEEEEEECCCCchhHHHHCCCCcccEEEE
Q psy5680 94 PKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTVIG 134 (201)
Q Consensus 94 ~~l~~l~~~~~~~~~~~vd~~~~~~~l~~~~~v~~~Pti~~ 134 (201)
..++++.+.-+++.+..++. .++++++++..||.++-
T Consensus 63 ~~l~~Lr~lapgl~l~P~sg----ddLa~rL~l~hYPvLit 99 (105)
T TIGR03765 63 AALQRLRALAPGLPLLPVSG----DDLAERLGLRHYPVLIT 99 (105)
T ss_pred HHHHHHHHHcCCCcccCCCH----HHHHHHhCCCcccEEEe
Confidence 34555555555555544442 47899999999998764
No 336
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=28.60 E-value=1.5e+02 Score=18.26 Aligned_cols=56 Identities=11% Similarity=0.061 Sum_probs=30.6
Q ss_pred EEEECCCChhhHhhHHHHHHHHHhCCCeEEEEEECCCCchhHHHHCC-CCcccEEEEEeCCeE
Q psy5680 79 AYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFE-VQAVPTVIGFRNGDP 140 (201)
Q Consensus 79 v~f~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~l~~~~~-v~~~Pti~~~~~G~~ 140 (201)
..+|.+-|+.|+..+-.+....-. +....++.+.. .+-....+ ...+|++.. +|..
T Consensus 3 ~Ly~~~~~~~~~~v~~~L~~~~i~---~e~~~v~~~~~-~~~~~~~~p~~~vP~l~~--~~~~ 59 (73)
T cd03076 3 TLTYFPVRGRAEAIRLLLADQGIS---WEEERVTYEEW-QESLKPKMLFGQLPCFKD--GDLT 59 (73)
T ss_pred EEEEeCCcchHHHHHHHHHHcCCC---CEEEEecHHHh-hhhhhccCCCCCCCEEEE--CCEE
Confidence 455667789998777666654222 45555554333 22222333 456898853 5543
No 337
>PF11072 DUF2859: Protein of unknown function (DUF2859); InterPro: IPR021300 This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=28.10 E-value=48 Score=24.30 Aligned_cols=17 Identities=24% Similarity=0.524 Sum_probs=14.6
Q ss_pred hhHHHHCCCCcccEEEE
Q psy5680 118 GEIAREFEVQAVPTVIG 134 (201)
Q Consensus 118 ~~l~~~~~v~~~Pti~~ 134 (201)
.++++++++..||.++-
T Consensus 121 ddLA~rL~l~HYPvLIt 137 (142)
T PF11072_consen 121 DDLARRLGLSHYPVLIT 137 (142)
T ss_pred HHHHHHhCCCcccEEee
Confidence 57899999999998763
No 338
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=27.56 E-value=3.3e+02 Score=21.96 Aligned_cols=48 Identities=15% Similarity=0.191 Sum_probs=30.6
Q ss_pred CCChhhHhhHHHHHHHHHhCCCeEEEEEECCCCchhHHHHCCCCcccEEEE
Q psy5680 84 PSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTVIG 134 (201)
Q Consensus 84 ~wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~l~~~~~v~~~Pti~~ 134 (201)
.+|++|++..-.+.+..- .+.+..+|.....+++.+..-...+|++..
T Consensus 71 g~cp~s~rV~i~L~ekgi---~ye~~~vdl~~~~~~fl~iNP~GkVPvL~~ 118 (265)
T PLN02817 71 GDCPFCQRVLLTLEEKHL---PYDMKLVDLTNKPEWFLKISPEGKVPVVKL 118 (265)
T ss_pred CCCcHHHHHHHHHHHcCC---CCEEEEeCcCcCCHHHHhhCCCCCCCEEEE
Confidence 349999998877765421 256677777654144544444557899875
No 339
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=27.48 E-value=1.2e+02 Score=22.71 Aligned_cols=25 Identities=8% Similarity=0.235 Sum_probs=22.0
Q ss_pred EEECCCChhhHhhHHHHHHHHHhCC
Q psy5680 80 YFFKPSCGFCKQLEPKISTVSETTS 104 (201)
Q Consensus 80 ~f~a~wC~~C~~~~~~l~~l~~~~~ 104 (201)
.|+..-||.|....+.+.++.+.++
T Consensus 3 ~~~D~~cP~cyl~~~~l~~~~~~~~ 27 (201)
T cd03024 3 IWSDVVCPWCYIGKRRLEKALAELG 27 (201)
T ss_pred EEecCcCccHHHHHHHHHHHHHhCC
Confidence 5667789999999999999999995
No 340
>KOG0855|consensus
Probab=27.05 E-value=76 Score=24.13 Aligned_cols=31 Identities=23% Similarity=0.711 Sum_probs=19.7
Q ss_pred hCCCcEEEEEE----CCCC--hhhHhhHHHHHHHHHhC
Q psy5680 72 RGRNPVLAYFF----KPSC--GFCKQLEPKISTVSETT 103 (201)
Q Consensus 72 ~~~~~vvv~f~----a~wC--~~C~~~~~~l~~l~~~~ 103 (201)
..+++|+++|| .|+| ..| .++-.++++.+.+
T Consensus 88 t~nk~vV~f~YP~asTPGCTkQaC-gFRDnY~k~kka~ 124 (211)
T KOG0855|consen 88 TGNKPVVLFFYPAASTPGCTKQAC-GFRDNYEKFKKAG 124 (211)
T ss_pred cCCCcEEEEEeccCCCCCcccccc-cccccHHHHhhcC
Confidence 45668888888 4556 445 4555666665544
No 341
>TIGR00244 transcriptional regulator NrdR. Members of this almost entirely bacterial family contain an ATP cone domain (PFAM:PF03477). There is never more than one member per genome. Common gene symbols given include nrdR, ybaD, ribX and ytcG. The member from Streptomyces coelicolor is found upstream in the operon of the class II oxygen-independent ribonucleotide reductase gene nrdJ and was shown to repress nrdJ expression. Many members of this family are found near genes for riboflavin biosynthesis in Gram-negative bacteria, suggesting a role in that pathway. However, a phylogenetic profiling study associates members of this family with the presence of a palindromic signal with consensus acaCwAtATaTwGtgt, termed the NrdR-box, an upstream element for most operons for ribonucleotide reductase of all three classes in bacterial genomes.
Probab=26.93 E-value=76 Score=23.41 Aligned_cols=68 Identities=12% Similarity=0.160 Sum_probs=47.6
Q ss_pred CCcccEEEEEeCCeEEE-------------EEeCCCCHHHHHHHHHHHHhhhhhccccccCCCCccHHHHHHHHhhcceE
Q psy5680 126 VQAVPTVIGFRNGDPVD-------------MVVGNADQDVIQTLVSKLSQKLATHYQVDLTTGTPDQVYLIVLLRYDQVY 192 (201)
Q Consensus 126 v~~~Pti~~~~~G~~v~-------------~~~G~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (201)
+...|-+++=++|.... ...-+.+.+++...+.+.-..+...+.....+..+.+.++..|...|+|-
T Consensus 44 ve~~~l~ViKkdG~re~Fdr~Kl~~gl~~Ac~KRpVs~e~ie~~v~~Ie~~l~~~~~~EI~S~~IGe~Vm~~L~~lD~VA 123 (147)
T TIGR00244 44 AELLPPTVIKQDGVREPFNREKLLRGMVRACEKRPVSFDDLEHAINHIEAQLRAQGEREVPSELIGQMVMQYLKKLDEVA 123 (147)
T ss_pred ccccccEEEcCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhhcCcch
Confidence 55556666657775321 11224677888888887777777777777778888889999999988875
Q ss_pred E
Q psy5680 193 L 193 (201)
Q Consensus 193 ~ 193 (201)
-
T Consensus 124 Y 124 (147)
T TIGR00244 124 Y 124 (147)
T ss_pred h
Confidence 4
No 342
>PRK13738 conjugal transfer pilus assembly protein TraW; Provisional
Probab=26.91 E-value=92 Score=24.43 Aligned_cols=38 Identities=18% Similarity=0.434 Sum_probs=25.6
Q ss_pred HHHHHhCCC-eEEEEEECCCCchhHHHHCCCCcccEEEEE-eCCeE
Q psy5680 97 STVSETTSG-VEFVKINVENGGGEIAREFEVQAVPTVIGF-RNGDP 140 (201)
Q Consensus 97 ~~l~~~~~~-~~~~~vd~~~~~~~l~~~~~v~~~Pti~~~-~~G~~ 140 (201)
.++.+.++. +.| |.. ..+.++|+|..+|+++.- .+|+.
T Consensus 157 ~~~~~~l~~~vYf-----dQ~-G~Lt~rF~I~~VPAvV~~~q~G~~ 196 (209)
T PRK13738 157 PEMSKALDSRIYF-----DQN-GVLCQRFGIDQVPARVSAVPGGRF 196 (209)
T ss_pred HHHHHHhCCceEE-----cCc-chHHHhcCCeeeceEEEEcCCCCE
Confidence 444555543 333 444 569999999999999862 56654
No 343
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=26.75 E-value=67 Score=25.03 Aligned_cols=28 Identities=32% Similarity=0.786 Sum_probs=24.6
Q ss_pred cEEEEEECCCChhhHhhHHHHHHHHHhC
Q psy5680 76 PVLAYFFKPSCGFCKQLEPKISTVSETT 103 (201)
Q Consensus 76 ~vvv~f~a~wC~~C~~~~~~l~~l~~~~ 103 (201)
..+.+.+-|-|+.|..+.|.++++....
T Consensus 2 ~~lhYifDPmCgWCyGa~Pll~~l~~~~ 29 (212)
T COG3531 2 VTLHYIFDPMCGWCYGAAPLLEALSAQP 29 (212)
T ss_pred ceeEEecCcchhhhhCccHHHHHHHhcC
Confidence 3577899999999999999999998765
No 344
>PF07511 DUF1525: Protein of unknown function (DUF1525); InterPro: IPR011090 This family of proteins is restricted to the Gammaproteobacteria. Members belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=26.20 E-value=1.6e+02 Score=20.69 Aligned_cols=36 Identities=17% Similarity=0.173 Sum_probs=24.2
Q ss_pred HHHCCCCcccEEEEEeCCeEEEEEeCCCCHHHHHHHHHHH
Q psy5680 121 AREFEVQAVPTVIGFRNGDPVDMVVGNADQDVIQTLVSKL 160 (201)
Q Consensus 121 ~~~~~v~~~Pti~~~~~G~~v~~~~G~~~~~~l~~~i~~~ 160 (201)
+-.+||..+|.++|- ++. ...|..+...-...+++.
T Consensus 76 Aw~lgi~k~PAVVfD--~~~--VVYG~tDV~~A~~~~~~~ 111 (114)
T PF07511_consen 76 AWSLGITKYPAVVFD--DRY--VVYGETDVARALARIEQW 111 (114)
T ss_pred HHHhCccccCEEEEc--CCe--EEecccHHHHHHHHHHHH
Confidence 458899999999984 332 346766666655555543
No 345
>PRK00766 hypothetical protein; Provisional
Probab=26.07 E-value=1e+02 Score=23.82 Aligned_cols=49 Identities=22% Similarity=0.384 Sum_probs=32.7
Q ss_pred CeEEEEEECCCCchhHHHHCCCCcccEEEEEeCCeEEEEEeCCCCHHHHHHHHHHHHhhhhh
Q psy5680 105 GVEFVKINVENGGGEIAREFEVQAVPTVIGFRNGDPVDMVVGNADQDVIQTLVSKLSQKLAT 166 (201)
Q Consensus 105 ~~~~~~vd~~~~~~~l~~~~~v~~~Pti~~~~~G~~v~~~~G~~~~~~l~~~i~~~~~~~~~ 166 (201)
++.|+..|+-.- ..+.++ .+.|.+++++.- .+.+.+...|.+++...+.
T Consensus 79 Git~agFNvvD~-~~l~~~---tg~PVI~V~r~~---------p~~~~ie~AL~k~f~~~~~ 127 (194)
T PRK00766 79 GITYGGFNVVDI-EELYRE---TGLPVIVVMRKK---------PDFEAIESALKKHFSDWEE 127 (194)
T ss_pred CEeeeeeEEecH-HHHHHH---HCCCEEEEEecC---------CCHHHHHHHHHHHCCCHHH
Confidence 477778887766 667666 566888776432 5667788888777644433
No 346
>KOG0324|consensus
Probab=25.97 E-value=59 Score=25.52 Aligned_cols=54 Identities=13% Similarity=0.180 Sum_probs=41.3
Q ss_pred EEEECCCChhhHhhHHHHHHHHHhCCC--eEEEEEECCCCchhHHHHCCCCcccEEE
Q psy5680 79 AYFFKPSCGFCKQLEPKISTVSETTSG--VEFVKINVENGGGEIAREFEVQAVPTVI 133 (201)
Q Consensus 79 v~f~a~wC~~C~~~~~~l~~l~~~~~~--~~~~~vd~~~~~~~l~~~~~v~~~Pti~ 133 (201)
|....+.| ++..++..+++|+++|.+ ..+..=||+..+.++|.++--..+|..+
T Consensus 78 I~lG~Td~-~~~~v~~~le~L~~ey~G~~YhL~~kNCNHFsn~la~~Ltgk~IP~wi 133 (214)
T KOG0324|consen 78 ILLGSTDL-TEDDVRRILEELSEEYRGNSYHLLTKNCNHFSNELALQLTGKKIPSWV 133 (214)
T ss_pred EEecCCCC-CHHHHHHHHHHHHhhcCCceehhhhhccchhHHHHHHHHcCCCccHHH
Confidence 44455554 356778899999999998 8888888988767888888888888643
No 347
>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=25.79 E-value=1.5e+02 Score=23.59 Aligned_cols=101 Identities=18% Similarity=0.221 Sum_probs=57.7
Q ss_pred hHhhHHHHHHHHHhCCCeEEEEEECCCC-c-hhHHHHCCCCcccEEEEE-eCCeEEE--EEeCCCC-HHHHHHHHHHHHh
Q psy5680 89 CKQLEPKISTVSETTSGVEFVKINVENG-G-GEIAREFEVQAVPTVIGF-RNGDPVD--MVVGNAD-QDVIQTLVSKLSQ 162 (201)
Q Consensus 89 C~~~~~~l~~l~~~~~~~~~~~vd~~~~-~-~~l~~~~~v~~~Pti~~~-~~G~~v~--~~~G~~~-~~~l~~~i~~~~~ 162 (201)
|-+-...+++..+..+++.-..+|+... + +++. .+=...+|.+=++ .+-.... .+.|..+ .+.+.+-|.-.+.
T Consensus 35 ~gR~e~~L~e~~~~~p~~~t~v~Dv~d~~~~~~lv-ewLkk~~P~lNvliNNAGIqr~~dlt~~e~~~~~~~~eI~~Nl~ 113 (245)
T COG3967 35 CGRNEERLAEAKAENPEIHTEVCDVADRDSRRELV-EWLKKEYPNLNVLINNAGIQRNEDLTGAEDLLDDAEQEIATNLL 113 (245)
T ss_pred ecCcHHHHHHHHhcCcchheeeecccchhhHHHHH-HHHHhhCCchheeeecccccchhhccCCcchhhHHHHHHHHhhh
Confidence 4455667888888888855556666544 0 2233 3446789987544 3322322 2333222 2223333333221
Q ss_pred hhhhccccccCCCCccHHHHHHHHhhcceEEEeecCCC
Q psy5680 163 KLATHYQVDLTTGTPDQVYLIVLLRYDQVYLIVCSSGI 200 (201)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (201)
... .-...++.+|.++.+-+.|-.|||.
T Consensus 114 API----------~Lt~~~lphl~~q~~a~IInVSSGL 141 (245)
T COG3967 114 API----------RLTALLLPHLLRQPEATIINVSSGL 141 (245)
T ss_pred hHH----------HHHHHHHHHHHhCCCceEEEecccc
Confidence 110 1234799999999999999999996
No 348
>KOG1731|consensus
Probab=25.74 E-value=1.3e+02 Score=27.49 Aligned_cols=75 Identities=11% Similarity=0.076 Sum_probs=50.9
Q ss_pred HHHHHhC--CCeEEEEEECCCCchhHHHHCCCCcccEEEEEeCCeEEEEEeCCCCHHHHHHHHHHHHhhhhhccccccC
Q psy5680 97 STVSETT--SGVEFVKINVENGGGEIAREFEVQAVPTVIGFRNGDPVDMVVGNADQDVIQTLVSKLSQKLATHYQVDLT 173 (201)
Q Consensus 97 ~~l~~~~--~~~~~~~vd~~~~~~~l~~~~~v~~~Pti~~~~~G~~v~~~~G~~~~~~l~~~i~~~~~~~~~~~~~~~~ 173 (201)
+.+-..+ +++.+..+-.+++ ..+.. +++...|+.+++++|+......-..+.+...+.|.+++.......+.++.
T Consensus 205 ~~~l~~l~~~~v~vr~~~d~q~-~~~~~-l~~~~~~~~llfrnG~~q~l~~~~~s~~~y~~~I~~~lg~~~~a~~pt~~ 281 (606)
T KOG1731|consen 205 ANLLNDLPSKQVGVRARLDTQN-FPLFG-LKPDNFPLALLFRNGEQQPLWPSSSSRSAYVKKIDDLLGDKNEASGPTLH 281 (606)
T ss_pred HHHHhhccCCCcceEEEecchh-ccccc-cCCCCchhhhhhcCCcccccccccccHHHHHHHHHHHhcCccccCCCCcC
Confidence 3443444 4455555555555 45665 99999999999999987655455467778888888888776665555444
No 349
>PF03227 GILT: Gamma interferon inducible lysosomal thiol reductase (GILT); InterPro: IPR004911 This family includes the two characterised human gamma-interferon-inducible lysosomal thiol reductase (GILT) sequences [, ]. It also contains several other eukaryotic putative proteins with similarity to GILT []. The aligned region contains three conserved cysteine residues. In addition, the two GILT sequences possess a C-X(2)-C motif that is shared by some of the other sequences in the family. This motif is thought to be associated with disulphide bond reduction.
Probab=25.65 E-value=1.7e+02 Score=19.92 Aligned_cols=28 Identities=18% Similarity=0.462 Sum_probs=18.8
Q ss_pred EEEEECCCChhhHhhHH-HHHHH--HHhCCC
Q psy5680 78 LAYFFKPSCGFCKQLEP-KISTV--SETTSG 105 (201)
Q Consensus 78 vv~f~a~wC~~C~~~~~-~l~~l--~~~~~~ 105 (201)
|-.||-+-||.|+++.. .|..+ ...+.+
T Consensus 3 v~vyyESlCPd~~~fi~~~L~p~~~~~~~~~ 33 (108)
T PF03227_consen 3 VEVYYESLCPDCRRFITNQLFPVWTYEKLSD 33 (108)
T ss_pred EEEEEEecCHhHHHHHHHHHHHHHHHhhccc
Confidence 56789999999998743 45542 244544
No 350
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=25.42 E-value=1.9e+02 Score=21.51 Aligned_cols=44 Identities=14% Similarity=0.208 Sum_probs=33.5
Q ss_pred CCCcEEEEEECCCChhhHhhHHHHHHHHHhCCCeEEEEEECCCC
Q psy5680 73 GRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENG 116 (201)
Q Consensus 73 ~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~ 116 (201)
..+.++..|=+=.-|-|......+++.+.++.++.++.|..|-.
T Consensus 44 gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~~~~~Vl~IS~DLP 87 (158)
T COG2077 44 GKKKVISVFPSIDTPVCATQVRKFNEEAAKLGNTVVLCISMDLP 87 (158)
T ss_pred CceEEEEEccCCCCchhhHHHHHHHHHHhccCCcEEEEEeCCCh
Confidence 34445555666678999999999999999999877777776643
No 351
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=23.37 E-value=1.8e+02 Score=17.44 Aligned_cols=51 Identities=12% Similarity=0.038 Sum_probs=27.8
Q ss_pred EEECCCChhhHhhHHHHHHHHHhCCCeEEEEEECC----CCchhHHHHCCCCcccEEEE
Q psy5680 80 YFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVE----NGGGEIAREFEVQAVPTVIG 134 (201)
Q Consensus 80 ~f~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~----~~~~~l~~~~~v~~~Pti~~ 134 (201)
.|+.+.|+.|.+.+-.++...- .+....+|.. .. +++.+......+|++..
T Consensus 3 L~~~~~~~~~~~~~~~l~~~gi---~~~~~~~~~~~~~~~~-~~~~~~~p~~~vP~l~~ 57 (73)
T cd03042 3 LYSYFRSSASYRVRIALNLKGL---DYEYVPVNLLKGEQLS-PAYRALNPQGLVPTLVI 57 (73)
T ss_pred EecCCCCcchHHHHHHHHHcCC---CCeEEEecCccCCcCC-hHHHHhCCCCCCCEEEE
Confidence 3445566666665544444311 1555566653 22 45555556678998853
No 352
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=23.18 E-value=1.5e+02 Score=22.72 Aligned_cols=39 Identities=10% Similarity=0.263 Sum_probs=0.0
Q ss_pred hHHHHCCCCcccEEEEEeCCeEEEEEeCCCCHHHHHHHH
Q psy5680 119 EIAREFEVQAVPTVIGFRNGDPVDMVVGNADQDVIQTLV 157 (201)
Q Consensus 119 ~l~~~~~v~~~Pti~~~~~G~~v~~~~G~~~~~~l~~~i 157 (201)
..+.+.||.++|++++=.++..-..+-|.--.+.+.++|
T Consensus 170 ~~A~~~Gv~GVP~fvv~~~~~~~e~fwG~Drl~~~~~~l 208 (209)
T cd03021 170 DEALKYGAFGLPWIVVTNDKGKTEMFFGSDRFEQVADFL 208 (209)
T ss_pred HHHHHcCCCCCCEEEEEcCCCCccceecCCcHHHHHHHh
No 353
>KOG3029|consensus
Probab=22.83 E-value=4.2e+02 Score=22.10 Aligned_cols=75 Identities=23% Similarity=0.376 Sum_probs=45.5
Q ss_pred cEEEEEECCCChhhHhhHHHHHHHHHhCCC--eEEEEEECCCCchhHHHHC-CCCcccEEEEEeCCeEEEEEeCCCCHHH
Q psy5680 76 PVLAYFFKPSCGFCKQLEPKISTVSETTSG--VEFVKINVENGGGEIAREF-EVQAVPTVIGFRNGDPVDMVVGNADQDV 152 (201)
Q Consensus 76 ~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~--~~~~~vd~~~~~~~l~~~~-~v~~~Pti~~~~~G~~v~~~~G~~~~~~ 152 (201)
.-++.|-=..||.|-+.+..+. |-+ ..++.||--.- .++ +| ....+|-+++ +|+. ..+..-
T Consensus 89 L~l~LyQyetCPFCcKVrAFLD-----yhgisY~VVEVnpV~r-~eI--k~SsykKVPil~~--~Geq------m~dSsv 152 (370)
T KOG3029|consen 89 LDLVLYQYETCPFCCKVRAFLD-----YHGISYAVVEVNPVLR-QEI--KWSSYKKVPILLI--RGEQ------MVDSSV 152 (370)
T ss_pred ceEEEEeeccCchHHHHHHHHh-----hcCCceEEEEecchhh-hhc--cccccccccEEEe--ccce------echhHH
Confidence 4577777789999999886653 334 45555553322 222 22 3556776655 3652 355667
Q ss_pred HHHHHHHHHhhhhh
Q psy5680 153 IQTLVSKLSQKLAT 166 (201)
Q Consensus 153 l~~~i~~~~~~~~~ 166 (201)
|+..|..+++...+
T Consensus 153 IIs~laTyLq~~~q 166 (370)
T KOG3029|consen 153 IISLLATYLQDKRQ 166 (370)
T ss_pred HHHHHHHHhccCCC
Confidence 77778777755544
No 354
>KOG0868|consensus
Probab=22.63 E-value=75 Score=24.47 Aligned_cols=62 Identities=18% Similarity=0.415 Sum_probs=34.6
Q ss_pred CCCcEEEEEECCCChhhHhhHHHHHHHHHhCCCeEEEEEECCCC----chhHHHHCCCCcccEEEEEeCCeEE
Q psy5680 73 GRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENG----GGEIAREFEVQAVPTVIGFRNGDPV 141 (201)
Q Consensus 73 ~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~----~~~l~~~~~v~~~Pti~~~~~G~~v 141 (201)
..++++--+|.+.|..=-+..-.++.+ +..+..||.-+. +.++.+---...+|++++ +|..+
T Consensus 3 ~~KpiLYSYWrSSCswRVRiALaLK~i-----DYey~PvnLlk~~~q~~~ef~~iNPm~kVP~L~i--~g~tl 68 (217)
T KOG0868|consen 3 AAKPILYSYWRSSCSWRVRIALALKGI-----DYEYKPVNLLKEEDQSDSEFKEINPMEKVPTLVI--DGLTL 68 (217)
T ss_pred cccchhhhhhcccchHHHHHHHHHcCC-----CcceeehhhhcchhhhhhHHhhcCchhhCCeEEE--CCEEe
Confidence 457888888888886554433333333 244445554322 123333334567999887 66554
No 355
>PF14421 LmjF365940-deam: A distinct subfamily of CDD/CDA-like deaminases
Probab=22.56 E-value=1.2e+02 Score=23.35 Aligned_cols=29 Identities=17% Similarity=0.404 Sum_probs=20.3
Q ss_pred CChhhHhhHHHHHHHHHhCCCeEEEEEECCCC
Q psy5680 85 SCGFCKQLEPKISTVSETTSGVEFVKINVENG 116 (201)
Q Consensus 85 wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~ 116 (201)
=|+.|+.+. .++++..+++.++.+|-...
T Consensus 156 PCGaC~ewL---~KIAe~np~f~v~mFd~t~c 184 (193)
T PF14421_consen 156 PCGACKEWL---RKIAEANPDFRVYMFDDTRC 184 (193)
T ss_pred cchHHHHHH---HHHHHhCCCeEEEEecCCCc
Confidence 399998876 55555666788888775543
No 356
>COG1628 Endonuclease V homolog [Replication, recombination, and repair]
Probab=22.48 E-value=1.1e+02 Score=23.55 Aligned_cols=30 Identities=17% Similarity=0.470 Sum_probs=20.5
Q ss_pred CeEEEEEECCCCchhHHHHCCCCcccEEEEEeCC
Q psy5680 105 GVEFVKINVENGGGEIAREFEVQAVPTVIGFRNG 138 (201)
Q Consensus 105 ~~~~~~vd~~~~~~~l~~~~~v~~~Pti~~~~~G 138 (201)
++.|+.+|+-.. ..+.+ -.+.|.++++.++
T Consensus 77 GIt~aGFNivDi-~~l~~---~tg~PVi~V~~k~ 106 (185)
T COG1628 77 GITFAGFNIVDI-EALYK---ETGLPVIVVYRKK 106 (185)
T ss_pred CeeeccceEecH-HHHHH---hhCCcEEEEEecC
Confidence 477777776655 44444 4778999998654
No 357
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=22.43 E-value=1.8e+02 Score=17.12 Aligned_cols=32 Identities=25% Similarity=0.432 Sum_probs=22.6
Q ss_pred ECCCChhhHhhHHHHHHHHHhCCCeEEEEEECCCC
Q psy5680 82 FKPSCGFCKQLEPKISTVSETTSGVEFVKINVENG 116 (201)
Q Consensus 82 ~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~ 116 (201)
..=+|+.|.. .+++.....+++.-+.+|....
T Consensus 5 ~~m~C~~C~~---~v~~~l~~~~GV~~v~vd~~~~ 36 (62)
T PF00403_consen 5 PGMTCEGCAK---KVEKALSKLPGVKSVKVDLETK 36 (62)
T ss_dssp ESTTSHHHHH---HHHHHHHTSTTEEEEEEETTTT
T ss_pred CCcccHHHHH---HHHHHHhcCCCCcEEEEECCCC
Confidence 3447999965 4455566778888888887766
No 358
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=21.79 E-value=62 Score=21.32 Aligned_cols=15 Identities=20% Similarity=0.286 Sum_probs=12.0
Q ss_pred hhcceEEEeecCCCC
Q psy5680 187 RYDQVYLIVCSSGIR 201 (201)
Q Consensus 187 ~~~~~~~~~~~~~~~ 201 (201)
..++.++++|.+|.|
T Consensus 59 ~~~~~ivv~C~~G~r 73 (100)
T cd01523 59 PDDQEVTVICAKEGS 73 (100)
T ss_pred CCCCeEEEEcCCCCc
Confidence 356788999999976
No 359
>PLN02378 glutathione S-transferase DHAR1
Probab=21.60 E-value=3.7e+02 Score=20.47 Aligned_cols=52 Identities=13% Similarity=0.052 Sum_probs=31.7
Q ss_pred CCChhhHhhHHHHHHHHHhCCCeEEEEEECCCCchhHHHHCCCCcccEEEEEeCCeE
Q psy5680 84 PSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTVIGFRNGDP 140 (201)
Q Consensus 84 ~wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~l~~~~~v~~~Pti~~~~~G~~ 140 (201)
.+|++|++..-.+++..- .+.+..+|.....+++.+-.-...+|++.. +|..
T Consensus 18 ~~~p~~~rv~~~L~e~gl---~~e~~~v~~~~~~~~~l~inP~G~VPvL~~--~~~~ 69 (213)
T PLN02378 18 GDCPFSQRALLTLEEKSL---TYKIHLINLSDKPQWFLDISPQGKVPVLKI--DDKW 69 (213)
T ss_pred CCCcchHHHHHHHHHcCC---CCeEEEeCcccCCHHHHHhCCCCCCCEEEE--CCEE
Confidence 449999988766655421 256667776544145555555567898843 4443
No 360
>COG1327 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains [Transcription]
Probab=21.40 E-value=1.2e+02 Score=22.56 Aligned_cols=68 Identities=13% Similarity=0.198 Sum_probs=47.1
Q ss_pred CCcccEEEEEeCCeEEE-------------EEeCCCCHHHHHHHHHHHHhhhhhccccccCCCCccHHHHHHHHhhcceE
Q psy5680 126 VQAVPTVIGFRNGDPVD-------------MVVGNADQDVIQTLVSKLSQKLATHYQVDLTTGTPDQVYLIVLLRYDQVY 192 (201)
Q Consensus 126 v~~~Pti~~~~~G~~v~-------------~~~G~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (201)
+.-.|-+++=++|.... ....+.+.+++...+......+...+..+..+..+.+.++..|-+.|+|-
T Consensus 44 ~El~~~~VvKkdg~Re~F~r~Kl~~gl~~A~~KRpVs~e~ie~~v~~ie~~Lr~~g~~EV~S~~IG~~VM~~Lk~lD~VA 123 (156)
T COG1327 44 AELRPLIVVKKDGRREPFDREKLRRGLIRACEKRPVSSEQIEEAVSHIERQLRSSGEREVPSKEIGELVMEELKKLDEVA 123 (156)
T ss_pred eeeccceEECcCCCcCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 44556666657775421 11125677888888888877777777777778888888998888888874
Q ss_pred E
Q psy5680 193 L 193 (201)
Q Consensus 193 ~ 193 (201)
.
T Consensus 124 Y 124 (156)
T COG1327 124 Y 124 (156)
T ss_pred h
Confidence 3
No 361
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=21.04 E-value=5e+02 Score=21.73 Aligned_cols=86 Identities=9% Similarity=0.180 Sum_probs=52.4
Q ss_pred CCcEEEEEECCCChhhHhhHHHHHHHHHhCCCeEEEEEECCCCc-hhHHHHCCCCcccEEEEE-------------eC--
Q psy5680 74 RNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGG-GEIAREFEVQAVPTVIGF-------------RN-- 137 (201)
Q Consensus 74 ~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~-~~l~~~~~v~~~Pti~~~-------------~~-- 137 (201)
...++|.+ +||.|++....++.+.+.-+.+.++.+|+.... .....++.-..+|.+-+. .+
T Consensus 76 ~~~~lIEL---GsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~ 152 (319)
T TIGR03439 76 SGSMLVEL---GSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPE 152 (319)
T ss_pred CCCEEEEE---CCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhccccc
Confidence 34477777 567788888888888754445899999998650 122233333345544331 11
Q ss_pred ---CeEEEE----EeCCCCHHHHHHHHHHHHh
Q psy5680 138 ---GDPVDM----VVGNADQDVIQTLVSKLSQ 162 (201)
Q Consensus 138 ---G~~v~~----~~G~~~~~~l~~~i~~~~~ 162 (201)
+..+.. -.|..+.++...++.+...
T Consensus 153 ~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~ 184 (319)
T TIGR03439 153 NRSRPTTILWLGSSIGNFSRPEAAAFLAGFLA 184 (319)
T ss_pred ccCCccEEEEeCccccCCCHHHHHHHHHHHHH
Confidence 112222 3366788998999888765
No 362
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=20.54 E-value=2.9e+02 Score=22.37 Aligned_cols=69 Identities=6% Similarity=0.031 Sum_probs=40.8
Q ss_pred HHHHHH-hCCCcEEEEEECCCChhhHhhHHHHHHHHHhCCCeEEEEEECCCC--chhHHHHCCCCcccEEEEEe
Q psy5680 66 DFKQTI-RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENG--GGEIAREFEVQAVPTVIGFR 136 (201)
Q Consensus 66 ~~~~~~-~~~~~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~--~~~l~~~~~v~~~Pti~~~~ 136 (201)
+....+ ...-..++.+.+.+||....+...+.+++.+- +.++.|+-+.- -+++...+.-...+-|+|+.
T Consensus 42 Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~G--LRlIev~k~~L~~l~~l~~~l~~~~~kFIlf~D 113 (249)
T PF05673_consen 42 NTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQG--LRLIEVSKEDLGDLPELLDLLRDRPYKFILFCD 113 (249)
T ss_pred HHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcC--ceEEEECHHHhccHHHHHHHHhcCCCCEEEEec
Confidence 344444 34445677799999999888887777775443 55555554332 04555555544444444443
No 363
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=20.13 E-value=1.6e+02 Score=20.98 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=19.1
Q ss_pred ccHHHHHHHHhhcceEEEeecCC
Q psy5680 177 PDQVYLIVLLRYDQVYLIVCSSG 199 (201)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~ 199 (201)
--...+..-++.++.-|||||.|
T Consensus 47 g~~~W~~~~~~~ad~Vliv~S~~ 69 (150)
T PF08357_consen 47 GPPRWMERQIREADKVLIVCSPG 69 (150)
T ss_pred CHHHHHHHHHhcCCEEEEEeccc
Confidence 34468888899999999999965
Done!