RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5680
(201 letters)
>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, unknown function;
2.90A {Bacillus cereus}
Length = 105
Score = 92.0 bits (229), Expect = 1e-24
Identities = 23/103 (22%), Positives = 46/103 (44%), Gaps = 1/103 (0%)
Query: 60 IIEKIDDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGE 119
+ I++ I + VL + +CG C + K++ V E + VE ++I +++ E
Sbjct: 4 TFKTIEELATYIEEQQLVLLFIKTENCGVCDVMLRKVNYVLENYNYVEKIEILLQD-MQE 62
Query: 120 IAREFEVQAVPTVIGFRNGDPVDMVVGNADQDVIQTLVSKLSQ 162
IA + V PTV+ F NG + + ++ + +
Sbjct: 63 IAGRYAVFTGPTVLLFYNGKEILRESRFISLENLERTIQLFEE 105
>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized,
dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A
2oe0_A
Length = 114
Score = 88.5 bits (220), Expect = 4e-23
Identities = 26/106 (24%), Positives = 57/106 (53%), Gaps = 4/106 (3%)
Query: 56 MAYLIIEKIDDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINV-E 114
+ + + +F+ I+ + ++ F+ CG CK ++P ++ + + V FVK +V E
Sbjct: 12 TSITKLTNLTEFRNLIKQNDKLVIDFYATWCGPCKMMQPHLTKLIQAYPDVRFVKCDVDE 71
Query: 115 NGGGEIAREFEVQAVPTVIGFRNGDPVDMVVGNADQDVIQTLVSKL 160
+ +IA+E EV A+PT + ++G + ++G A+ ++ + L
Sbjct: 72 S--PDIAKECEVTAMPTFVLGKDGQLIGKIIG-ANPTALEKGIKDL 114
>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure
initiative structural genomics of pathogenic protozoa
consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1
Length = 112
Score = 87.4 bits (217), Expect = 9e-23
Identities = 28/107 (26%), Positives = 55/107 (51%), Gaps = 5/107 (4%)
Query: 56 MAYLIIEKIDDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINV-E 114
M ++ + +F I V+ FF CG CK++ P S+T + + F+K++V E
Sbjct: 9 MVKIVTSQ-AEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDVDE 67
Query: 115 NGGGEIAREFEVQAVPTVIGFRNGDPVDMVVGNADQDVIQTLVSKLS 161
E+ + + ++PT ++NG VD ++G A+ ++ L+ K +
Sbjct: 68 V--SEVTEKENITSMPTFKVYKNGSSVDTLLG-ANDSALKQLIEKYA 111
>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB:
2l6d_A
Length = 110
Score = 87.0 bits (216), Expect = 1e-22
Identities = 19/108 (17%), Positives = 40/108 (37%), Gaps = 3/108 (2%)
Query: 56 MAYLIIEKIDDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINV-E 114
M+ + + G + + +F K C CK +E + V ++
Sbjct: 1 MSAIRDITTEAGMAHFEGLSDAIVFFHKNLCPHCKNMEKVLDKFGARAPQVAISSVDSEA 60
Query: 115 NGGGEIAREFEVQAVPTVIGFRNGDPVDMVVGNADQDVIQTLVSKLSQ 162
E+ +E + VPT++ R+G + G + +Q L + +
Sbjct: 61 R--PELMKELGFERVPTLVFIRDGKVAKVFSGIMNPRELQALYASIHH 106
>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm,
deoxyribonucleotide synthesis, golgi apparatus,
membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB:
3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B
Length = 109
Score = 86.2 bits (214), Expect = 2e-22
Identities = 33/107 (30%), Positives = 53/107 (49%), Gaps = 5/107 (4%)
Query: 56 MAYLIIEKIDDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINV-E 114
M +F I V+ F+ CG CK + P I SE +F K++V E
Sbjct: 7 MVTQFKTA-SEFDSAIAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQADFYKLDVDE 65
Query: 115 NGGGEIAREFEVQAVPTVIGFRNGDPVDMVVGNADQDVIQTLVSKLS 161
G++A++ EV A+PT++ F+NG V VVG A+ I+ ++ +
Sbjct: 66 L--GDVAQKNEVSAMPTLLLFKNGKEVAKVVG-ANPAAIKQAIAANA 109
>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A
{Trypanosoma} SCOP: c.47.1.1
Length = 125
Score = 86.3 bits (214), Expect = 4e-22
Identities = 24/113 (21%), Positives = 53/113 (46%), Gaps = 4/113 (3%)
Query: 52 QAIQMAYLIIEKIDDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKI 111
+A + + + ++ F+ + +A+F CG CK +E + ++ V+F K+
Sbjct: 15 RARYPSVVDVYSVEQFRNIMSEDILTVAWFTAVWCGPCKTIERPMEKIAYEFPTVKFAKV 74
Query: 112 NV-ENGGGEIAREFEVQAVPTVIGFRNGDPVDMVVGNADQDVIQTLVSKLSQK 163
+ N EI + V +PT I R+G + V+G A+ +++ + + +
Sbjct: 75 DADNN--SEIVSKCRVLQLPTFIIARSGKMLGHVIG-ANPGMLRQKLRDIIKD 124
>1gh2_A Thioredoxin-like protein; redox-active center, electron transport;
2.22A {Homo sapiens} SCOP: c.47.1.1
Length = 107
Score = 84.7 bits (210), Expect = 9e-22
Identities = 23/109 (21%), Positives = 43/109 (39%), Gaps = 4/109 (3%)
Query: 56 MAYLIIEKIDDFKQTIR--GRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINV 113
+ + DF+ + G + F CG C ++ P S++S F++++V
Sbjct: 1 VGVKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDV 60
Query: 114 ENGGGEIAREFEVQAVPTVIGFRNGDPVDMVVGNADQDVIQTLVSKLSQ 162
A + A PT FRN +D G AD ++ + + +
Sbjct: 61 HQ-CQGTAATNNISATPTFQFFRNKVRIDQYQG-ADAVGLEEKIKQHLE 107
>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP:
c.47.1.1
Length = 113
Score = 84.3 bits (209), Expect = 1e-21
Identities = 30/99 (30%), Positives = 54/99 (54%), Gaps = 4/99 (4%)
Query: 65 DDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINV-ENGGGEIARE 123
+ F++ + ++ F C CK + P + +++ V F+K++V E +A E
Sbjct: 17 EHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFPNVTFLKVDVDEL--KAVAEE 74
Query: 124 FEVQAVPTVIGFRNGDPVDMVVGNADQDVIQTLVSKLSQ 162
+ V+A+PT I ++G VD VG AD+D + TLV+K +
Sbjct: 75 WNVEAMPTFIFLKDGKLVDKTVG-ADKDGLPTLVAKHAT 112
>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} PDB: 3m9k_A
2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A
1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A*
1cqg_A 1cqh_A 1mdi_A ...
Length = 105
Score = 82.7 bits (205), Expect = 4e-21
Identities = 29/102 (28%), Positives = 57/102 (55%), Gaps = 4/102 (3%)
Query: 61 IEKIDDFKQTIR--GRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGG 118
IE F++ + G V+ F CG CK ++P ++SE S V F++++V++
Sbjct: 5 IESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQ- 63
Query: 119 EIAREFEVQAVPTVIGFRNGDPVDMVVGNADQDVIQTLVSKL 160
++A E EV+++PT F+ G V G A+++ ++ +++L
Sbjct: 64 DVASESEVKSMPTFQFFKKGQKVGEFSG-ANKEKLEATINEL 104
>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine
nucleotide disulfide oxidoreductase, electron TRAN
oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB:
3qfb_C*
Length = 116
Score = 83.1 bits (206), Expect = 4e-21
Identities = 28/102 (27%), Positives = 56/102 (54%), Gaps = 4/102 (3%)
Query: 61 IEKIDDFKQTIR--GRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGG 118
IE F++ + G V+ F CG K ++P ++SE S V F++++V++
Sbjct: 16 IESKTAFQEALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSNVIFLEVDVDDCQ- 74
Query: 119 EIAREFEVQAVPTVIGFRNGDPVDMVVGNADQDVIQTLVSKL 160
++A E EV+++PT F+ G V G A+++ ++ +++L
Sbjct: 75 DVASECEVKSMPTFQFFKKGQKVGEFSG-ANKEKLEATINEL 115
>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola
hepatica}
Length = 104
Score = 82.3 bits (204), Expect = 7e-21
Identities = 26/103 (25%), Positives = 54/103 (52%), Gaps = 6/103 (5%)
Query: 60 IIEKIDDFKQTIR--GRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINV-ENG 116
++ D ++ I ++ FF CG C+ + PK+ +++ VEF K++V +N
Sbjct: 3 VLATAADLEKLINENKGRLIVVDFFAQWCGPCRNIAPKVEALAKEIPEVEFAKVDVDQN- 61
Query: 117 GGEIAREFEVQAVPTVIGFRNGDPVDMVVGNADQDVIQTLVSK 159
E A ++ V A+PT + ++G VD G A++ ++ +++
Sbjct: 62 -EEAAAKYSVTAMPTFVFIKDGKEVDRFSG-ANETKLRETITR 102
>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE,
fungi, epitope, allergen; 1.41A {Malassezia sympodialis}
Length = 121
Score = 81.6 bits (202), Expect = 2e-20
Identities = 39/121 (32%), Positives = 64/121 (52%), Gaps = 6/121 (4%)
Query: 44 RAHLLNLIQAIQMAYLIIEKIDDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETT 103
+H + + + +I D FKQ G V+ F+ CG CK + P +S+T
Sbjct: 3 GSHHHHHHLVPRGSVQVISSYDQFKQVTGGDKVVVIDFWATWCGPCKMIGPVFEKISDTP 62
Query: 104 SG--VEFVKINV-ENGGGEIAREFEVQAVPTVIGFRNGDPVDMVVGNADQDVIQTLVSKL 160
+G V F K++V E +IA+E ++A+PT + F+NG +D VVG AD +Q +++
Sbjct: 63 AGDKVGFYKVDVDEQS--QIAQEVGIRAMPTFVFFKNGQKIDTVVG-ADPSKLQAAITQH 119
Query: 161 S 161
S
Sbjct: 120 S 120
>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A
Length = 153
Score = 82.6 bits (204), Expect = 2e-20
Identities = 22/103 (21%), Positives = 52/103 (50%), Gaps = 4/103 (3%)
Query: 61 IEKIDDFKQTIR--GRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGG 118
+ F++ +R ++ ++ +F+ P C Q+ ++ +++ V FVK+ E
Sbjct: 17 VGSAGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKELPQVSFVKLEAEG-VP 75
Query: 119 EIAREFEVQAVPTVIGFRNGDPVDMVVGNADQDVIQTLVSKLS 161
E++ ++E+ +VPT + F+N +D + G A + V + +
Sbjct: 76 EVSEKYEISSVPTFLFFKNSQKIDRLDG-AHAPELTKKVQRHA 117
>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein
disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum
vulgare var} PDB: 2vm2_A
Length = 118
Score = 80.8 bits (200), Expect = 3e-20
Identities = 28/111 (25%), Positives = 51/111 (45%), Gaps = 8/111 (7%)
Query: 61 IEKIDDFKQTI----RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINV-EN 115
+F + V+ F CG C+ + P + ++ G F+K++V E
Sbjct: 11 CHTKQEFDTHMANGKDTGKLVIIDFTASWCGPCRVIAPVFAEYAKKFPGAIFLKVDVDEL 70
Query: 116 GGGEIAREFEVQAVPTVIGFRNGDPVDMVVGNADQDVIQTLVSKLSQKLAT 166
++A + V+A+PT + ++G+ VD VVG +D I T + L +T
Sbjct: 71 K--DVAEAYNVEAMPTFLFIKDGEKVDSVVG-GRKDDIHTKIVALMGSAST 118
>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex,
iron-sulfur, electron transport; 1.65A {Spinacia
oleracea} PDB: 2pvo_C 1f9m_A
Length = 111
Score = 80.4 bits (199), Expect = 3e-20
Identities = 25/99 (25%), Positives = 41/99 (41%), Gaps = 3/99 (3%)
Query: 65 DDFKQTIR--GRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAR 122
D F ++ G PV+ F CG K + PK ++E V F+K++ +A+
Sbjct: 13 DTFWPIVKAAGDKPVVLDMFTQWCGPSKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAK 72
Query: 123 EFEVQAVPTVIGFRNGDPVDMVVGNADQDVIQTLVSKLS 161
E ++ VPT + V V G A D + +
Sbjct: 73 ELGIRVVPTFKILKENSVVGEVTG-AKYDKLLEAIQAAR 110
>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP:
c.47.1.1
Length = 124
Score = 80.5 bits (199), Expect = 5e-20
Identities = 26/99 (26%), Positives = 42/99 (42%), Gaps = 3/99 (3%)
Query: 65 DDFKQTIR--GRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAR 122
D F ++ G PV+ F CG CK + PK ++E V F+K++ +A+
Sbjct: 26 DTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAK 85
Query: 123 EFEVQAVPTVIGFRNGDPVDMVVGNADQDVIQTLVSKLS 161
E ++ VPT + V V G A D + +
Sbjct: 86 ELGIRVVPTFKILKENSVVGEVTG-AKYDKLLEAIQAAR 123
>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm,
redox-active center, transport, oxidoreductase; 1.60A
{Populus trichocarpa x populusdeltoides} PDB: 3d21_A
Length = 139
Score = 80.6 bits (199), Expect = 6e-20
Identities = 28/109 (25%), Positives = 52/109 (47%), Gaps = 6/109 (5%)
Query: 60 IIEKIDDFKQTI----RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVEN 115
+I + + Q + R VLA F CG +Q+ P +SE + F+ I+V+
Sbjct: 28 LITTKERWDQKLSEASRDGKIVLANFSARWCGPSRQIAPYYIELSENYPSLMFLVIDVDE 87
Query: 116 GGGEIAREFEVQAVPTVIGFRNGDPVDMVVGNADQDVIQTLVSKLSQKL 164
+ + +E++A PT R+G VD +VG A++ + ++ + L
Sbjct: 88 -LSDFSASWEIKATPTFFFLRDGQQVDKLVG-ANKPELHKKITAILDSL 134
>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure
initiative, CESG, center for eukaryotic structural
genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1
Length = 124
Score = 80.1 bits (198), Expect = 8e-20
Identities = 24/96 (25%), Positives = 51/96 (53%), Gaps = 4/96 (4%)
Query: 65 DDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINV-ENGGGEIARE 123
+ ++ + V+ F CG C+ + P + +++ V F+K++ E +A +
Sbjct: 29 EQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVLFLKVDTDEL--KSVASD 86
Query: 124 FEVQAVPTVIGFRNGDPVDMVVGNADQDVIQTLVSK 159
+ +QA+PT + + G +D VVG A +D +Q+ ++K
Sbjct: 87 WAIQAMPTFMFLKEGKILDKVVG-AKKDELQSTIAK 121
>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase,
thioredoxin-fold, protein disulfide reductase; 1.70A
{Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*
Length = 122
Score = 79.7 bits (197), Expect = 9e-20
Identities = 25/97 (25%), Positives = 47/97 (48%), Gaps = 4/97 (4%)
Query: 67 FKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINV-ENGGGEIAREFE 125
++ + V+ F CG C+ + P + +++ F+K++V E IA +F
Sbjct: 27 IEEANTAKKLVVIDFTASWCGPCRIMAPVFADLAKKFPNAVFLKVDVDEL--KPIAEQFS 84
Query: 126 VQAVPTVIGFRNGDPVDMVVGNADQDVIQTLVSKLSQ 162
V+A+PT + + GD D VVG A ++ + V +
Sbjct: 85 VEAMPTFLFMKEGDVKDRVVG-AIKEELTAKVGLHAA 120
>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport,
redox- active center, transport, oxidoreductase; HET:
CME; 1.50A {Saccharomyces cerevisiae}
Length = 112
Score = 79.3 bits (196), Expect = 1e-19
Identities = 28/110 (25%), Positives = 42/110 (38%), Gaps = 9/110 (8%)
Query: 61 IEKIDDFKQTIR---GRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG--VEFVKINV-E 114
I + F G ++ YF CK L+ +S S V F+ I+ E
Sbjct: 5 INDQEQFTYLTTTAAGDKLIVLYFHTSWAEPCKALKQVFEAISNEPSNSNVSFLSIDADE 64
Query: 115 NGGGEIAREFEVQAVPTVIGFRNGDPVDMVVGNADQDVIQTLVSKLSQKL 164
N EI+ FE+ AVP I G + + G AD +L+ +
Sbjct: 65 NS--EISELFEISAVPYFIIIHKGTILKELSG-ADPKEYVSLLEDCKNSV 111
>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome
research, oxidoreductase; NMR {Oryza sativa}
Length = 130
Score = 79.8 bits (197), Expect = 1e-19
Identities = 28/106 (26%), Positives = 51/106 (48%), Gaps = 8/106 (7%)
Query: 59 LIIEKIDDFKQTI----RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINV- 113
+ D+F + V+ F CG C+ + P + ++ G F+K++V
Sbjct: 17 IACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVDVD 76
Query: 114 ENGGGEIAREFEVQAVPTVIGFRNGDPVDMVVGNADQDVIQTLVSK 159
E E+A ++ V+A+PT + ++G D VVG A +D +Q + K
Sbjct: 77 EL--KEVAEKYNVEAMPTFLFIKDGAEADKVVG-ARKDDLQNTIVK 119
>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A
{Schistosoma mansoni} PDB: 2xbq_A 2xbi_A
Length = 117
Score = 79.3 bits (196), Expect = 1e-19
Identities = 33/110 (30%), Positives = 57/110 (51%), Gaps = 6/110 (5%)
Query: 54 IQMAYLI-IEKIDDFKQTIR--GRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVK 110
+ M+ LI +++ D + + V+ FF CG CK + P +SE + FVK
Sbjct: 10 VIMSELIELKQDGDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKYDAI-FVK 68
Query: 111 INVENGGGEIAREFEVQAVPTVIGFRNGDPVDMVVGNADQDVIQTLVSKL 160
++V+ E AR++ + A+PT I +NG+ V VVG A ++ ++ K
Sbjct: 69 VDVDKLE-ETARKYNISAMPTFIAIKNGEKVGDVVG-ASIAKVEDMIKKF 116
>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron
transport; 2.20A {Drosophila melanogaster} SCOP:
c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A
Length = 106
Score = 75.4 bits (186), Expect = 3e-18
Identities = 28/108 (25%), Positives = 52/108 (48%), Gaps = 8/108 (7%)
Query: 56 MAYLIIEKIDDFKQTIR--GRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKIN 112
M Y + +K D + V+ FF CG CK + PK+ +S + V +K++
Sbjct: 1 MVYQVKDK-ADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVD 59
Query: 113 V-ENGGGEIAREFEVQAVPTVIGFRNGDPVDMVVGNADQDVIQTLVSK 159
V E +IA E+ + ++PT + +NG V+ G A+ ++ ++
Sbjct: 60 VDECE--DIAMEYNISSMPTFVFLKNGVKVEEFAG-ANAKRLEDVIKA 104
>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}
Length = 118
Score = 75.5 bits (186), Expect = 4e-18
Identities = 26/117 (22%), Positives = 47/117 (40%), Gaps = 8/117 (6%)
Query: 56 MAYLIIEKIDDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINV-E 114
+ + + VL FF CG C++L + +++E V F+K++V +
Sbjct: 5 IVHFNGTHEALLNRIKEAPGLVLVDFFATWCGPCQRLGQILPSIAEANKDVTFIKVDVDK 64
Query: 115 NGGGEIAREFEVQAVPTVIGFRNG----DPVDMVVGNADQDVIQTLVSKLSQKLATH 167
N G A + V ++P + + +D VG AD I+ + K H
Sbjct: 65 N--GNAADAYGVSSIPALFFVKKEGNEIKTLDQFVG-ADVSRIKADIEKFKHHHHHH 118
>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas
reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A
Length = 112
Score = 73.9 bits (182), Expect = 1e-17
Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 5/99 (5%)
Query: 66 DFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINV-ENGGGEIARE 123
+ P++ F CG CK + P T+S +G V F+K++V +A
Sbjct: 16 QLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVA--AVAEA 73
Query: 124 FEVQAVPTVIGFRNGDPVDMVVGNADQDVIQTLVSKLSQ 162
+ A+PT +++G D +VG A QD ++ LV+K +
Sbjct: 74 AGITAMPTFHVYKDGVKADDLVG-ASQDKLKALVAKHAA 111
>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase,
structural genomics consortium, SGC; 2.00A {Plasmodium
falciparum}
Length = 133
Score = 74.4 bits (183), Expect = 1e-17
Identities = 19/107 (17%), Positives = 39/107 (36%), Gaps = 9/107 (8%)
Query: 61 IEKIDDFKQTIR--GRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGG 118
++ Q + ++ F C C +++ V V I+V+
Sbjct: 25 LKNTGSLNQVFSSTQNSSIVIKFGAVWCKPCNKIKEYFKNQLNYYY-VTLVDIDVDIHP- 82
Query: 119 EIAREFEVQAVPTVIGFRNG----DPVDMVVGNADQDVIQTLVSKLS 161
++ + ++A+PT + N V V G A+Q+ I+ K
Sbjct: 83 KLNDQHNIKALPTFEFYFNLNNEWVLVHTVEG-ANQNDIEKAFQKYC 128
>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 2.25A {Aeropyrum pernix}
Length = 135
Score = 72.9 bits (179), Expect = 6e-17
Identities = 15/114 (13%), Positives = 40/114 (35%), Gaps = 13/114 (11%)
Query: 65 DDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG--------VEFVKINV-EN 115
++F+Q ++ + + +C C + P++ S+ + +
Sbjct: 24 EEFRQLLQ--GDAILAVYSKTCPHCHRDWPQLIQASKEVDVPIVMFIWGSLIGERELSAA 81
Query: 116 GGGEIAREFEVQAVPTVIGFRNGDPVDMVVGNADQDVIQTLVSKLSQKLATHYQ 169
+ V+ PT++ ++ G VD +VG + ++ H+
Sbjct: 82 R--LEMNKAGVEGTPTLVFYKEGRIVDKLVGATPWSLKVEKAREIYGGEGHHHH 133
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat,
lysine dimethylation, protein binding; HET: MLY; 1.80A
{Escherichia coli} PDB: 3qdn_A*
Length = 287
Score = 75.6 bits (186), Expect = 7e-17
Identities = 28/102 (27%), Positives = 51/102 (50%), Gaps = 4/102 (3%)
Query: 65 DDFKQTIRG--RNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENGGGEIA 121
+ +Q + PVL YF+ C QL P + +++ +G K++ + IA
Sbjct: 15 SNLQQVLEQSMTTPVLFYFWSERSQHCLQLTPILESLAAQYNGQFILAKLDCDAEQ-MIA 73
Query: 122 REFEVQAVPTVIGFRNGDPVDMVVGNADQDVIQTLVSKLSQK 163
+F ++A+PTV F+NG PVD G ++ I+ L+ + +
Sbjct: 74 AQFGLRAIPTVYLFQNGQPVDGFQGPQPEEAIRALLDXVLPR 115
>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB:
3hhv_A
Length = 104
Score = 71.2 bits (175), Expect = 1e-16
Identities = 28/102 (27%), Positives = 49/102 (48%), Gaps = 6/102 (5%)
Query: 65 DDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINV-ENGGGEIARE 123
+F + + F+ C C L P I ++E V F K+N EN +IA
Sbjct: 7 KNFDSFLASHEIAVVDFWAEWCAPCLILAPIIEELAEDYPQVGFGKLNSDEN--PDIAAR 64
Query: 124 FEVQAVPTVIGFRNGDPVDMVVGNADQDVIQTLVSKLSQKLA 165
+ V ++PTVI F++G+PVD ++G + + + ++ L
Sbjct: 65 YGVMSLPTVIFFKDGEPVDEIIGAVPR---EEIEIRIKNLLG 103
>2l57_A Uncharacterized protein; structural genomics, unknown function,
thioredoxin-like, PSI protein structure initiative; NMR
{Clostridium perfringens}
Length = 126
Score = 71.7 bits (176), Expect = 1e-16
Identities = 21/123 (17%), Positives = 54/123 (43%), Gaps = 3/123 (2%)
Query: 51 IQAIQMAYLIIEKIDDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFV 109
++ I+ + + + + P + F +C +C +++ ++S VS+ G
Sbjct: 3 LEGIKQINFQSINVVENLEEAKEGIPTIIMFKTDTCPYCVEMQKELSYVSKEREGKFNIY 62
Query: 110 KINV-ENGGGEIAREFEVQAVPTVIGF-RNGDPVDMVVGNADQDVIQTLVSKLSQKLATH 167
+ E ++A +++ VPT + + G+ + G ++ I+T+++ L K H
Sbjct: 63 YARLEEEKNIDLAYKYDANIVPTTVFLDKEGNKFYVHQGLMRKNNIETILNSLGVKEGHH 122
Query: 168 YQV 170
+
Sbjct: 123 HHH 125
>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural
genomics/proteomics initiative, RSGI; 1.82A {Thermus
thermophilus}
Length = 140
Score = 70.5 bits (173), Expect = 5e-16
Identities = 32/103 (31%), Positives = 53/103 (51%), Gaps = 7/103 (6%)
Query: 65 DDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINV-ENGGGEIAR 122
F Q + G L FF P CG C+ + P + ++ +G ++ VK+NV E+ +A
Sbjct: 41 KGFAQEVAGAPLTLVDFFAPWCGPCRLVSPILEELARDHAGRLKVVKVNVDEHP--GLAA 98
Query: 123 EFEVQAVPTVIGFRNGDPVDMVVGNADQDVIQTLVSKLSQKLA 165
+ V++VPT++ FR G PV VG + + + L +L L
Sbjct: 99 RYGVRSVPTLVLFRRGAPVATWVGASPR---RVLEERLRPYLE 138
>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase;
1.90A {Sulfolobus solfataricus}
Length = 109
Score = 68.9 bits (169), Expect = 8e-16
Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 5/109 (4%)
Query: 55 QMAYLIIEKIDD-FKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKIN 112
+ + + ++ F + IR VL + C C EP V+E G F ++N
Sbjct: 1 KKEDVTLVLTEENFDEVIRNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKGKAVFGRLN 60
Query: 113 V-ENGGGEIAREFEVQAVPTVIGFRNGDPVDMVVGNADQDVIQTLVSKL 160
V EN +IA ++ V +PT + F NG VD +VG D+D +++ V+K
Sbjct: 61 VDENQ--KIADKYSVLNIPTTLIFVNGQLVDSLVGAVDEDTLESTVNKY 107
>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich,
unknown function; 2.70A {Homo sapiens}
Length = 118
Score = 68.2 bits (167), Expect = 2e-15
Identities = 18/106 (16%), Positives = 40/106 (37%), Gaps = 7/106 (6%)
Query: 65 DDFKQTI---RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIA 121
+ + + V+ + ++ S C + +S ++ +FVK V
Sbjct: 11 NQYVNEVTNAEEDVWVIIHLYRSSIPMCLLVNQHLSLLARKFPETKFVKAIVN----SCI 66
Query: 122 REFEVQAVPTVIGFRNGDPVDMVVGNADQDVIQTLVSKLSQKLATH 167
+ + +PT+ ++NG +G + I + +L KLA
Sbjct: 67 QHYHDNCLPTIFVYKNGQIEAKFIGIIECGGINLKLEELEWKLAEV 112
>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural
genomics, center for structural genomics of infec
diseases, csgid; 2.19A {Yersinia pestis}
Length = 148
Score = 69.4 bits (170), Expect = 2e-15
Identities = 24/103 (23%), Positives = 52/103 (50%), Gaps = 7/103 (6%)
Query: 65 DDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINV-ENGGGEIAR 122
+ + ++ P++ F+ P CG C+ P + + +G V FVK+N ++
Sbjct: 46 ETLDKLLQDDLPMVIDFWAPWCGPCRSFAPIFAETAAERAGKVRFVKVNTEAEP--ALST 103
Query: 123 EFEVQAVPTVIGFRNGDPVDMVVGNADQDVIQTLVSKLSQKLA 165
F ++++PT++ +RNG +DM+ G + + L ++L+
Sbjct: 104 RFRIRSIPTIMLYRNGKMIDMLNGAVPK---APFDNWLDEQLS 143
>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion,
electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB:
1uvz_A 1w89_A
Length = 119
Score = 67.8 bits (166), Expect = 3e-15
Identities = 35/108 (32%), Positives = 56/108 (51%), Gaps = 5/108 (4%)
Query: 56 MAYLIIEKIDDFKQT-IRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINV 113
I+ DF+ + PV+ F CG CK L P++ + G V K+++
Sbjct: 12 STTFNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDI 71
Query: 114 -ENGGGEIAREFEVQAVPTVIGFRNGDPVDMVVGNADQDVIQTLVSKL 160
++ ++A E+EV AVPTV+ +NGD VD VG D+D ++ + KL
Sbjct: 72 DDHT--DLAIEYEVSAVPTVLAMKNGDVVDKFVGIKDEDQLEAFLKKL 117
>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi;
structural genomics, PSI, protein structure initiative;
2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB:
2gzp_A 2jzt_A
Length = 142
Score = 68.3 bits (167), Expect = 3e-15
Identities = 15/99 (15%), Positives = 33/99 (33%), Gaps = 4/99 (4%)
Query: 64 IDDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEF--VKINVENGGGEIA 121
+DD+ + + G +L I+ + ++ ++E I
Sbjct: 27 VDDWIKRV-GDGVILLSSDPRRTPEVSDNPVMIAELLREFPQFDWQVAVADLEQSE-AIG 84
Query: 122 REFEVQAVPTVIGFRNGDPVDMVVGNADQDVIQTLVSKL 160
F V+ P + F +G + G + TL+ +
Sbjct: 85 DRFNVRRFPATLVFTDGKLRGALSGIHPWAELLTLMRSI 123
>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium
falciparum}
Length = 128
Score = 67.8 bits (166), Expect = 5e-15
Identities = 20/128 (15%), Positives = 50/128 (39%), Gaps = 6/128 (4%)
Query: 36 SARAALPPRAHLLNLIQAIQMAYLIIEKIDD-FKQTIRGRN-PVLAYFFKPSCGFCKQLE 93
+ L P + +++ + +N ++ YFF C C
Sbjct: 2 TNDDPLTPLNRFDKYYLRMFKKVPRLQQNGSNIINGVNMKNTVIVLYFFAKWCQACTMQS 61
Query: 94 PKISTVSETTSG-VEFVKINV-ENGGGEIAREFEVQAVPTVIGFRNGDPVDMVVGNADQD 151
++ + + + +K+++ +N +AR+F V+++PT+I +N + +
Sbjct: 62 TEMDKLQKYYGKRIYLLKVDLDKNE--SLARKFSVKSLPTIILLKNKTMLARKDHFVSSN 119
Query: 152 VIQTLVSK 159
+ L+ K
Sbjct: 120 DLIALIKK 127
>2dbc_A PDCL2, unnamed protein product; phosducin-like protein,
thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus
musculus}
Length = 135
Score = 67.6 bits (165), Expect = 5e-15
Identities = 17/106 (16%), Positives = 39/106 (36%), Gaps = 7/106 (6%)
Query: 65 DDFKQTI---RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIA 121
+ + + V+ + ++ S C + +S ++ +FVK V
Sbjct: 18 NQYVNEVTNAEKDLWVVIHLYRSSVPMCLVVNQHLSVLARKFPETKFVKAIVN----SCI 73
Query: 122 REFEVQAVPTVIGFRNGDPVDMVVGNADQDVIQTLVSKLSQKLATH 167
+ +PT+ ++NG +G + I + +L KL+
Sbjct: 74 EHYHDNCLPTIFVYKNGQIEGKFIGIIECGGINLKLEELEWKLSEV 119
>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A
{Rhodobacter capsulatus}
Length = 155
Score = 67.1 bits (164), Expect = 1e-14
Identities = 26/106 (24%), Positives = 40/106 (37%), Gaps = 8/106 (7%)
Query: 65 DDFKQ-TIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINV-ENGGGEIA 121
R P+L F+ P CG C+Q+ P+ + T +G V KI+ + +A
Sbjct: 54 PAILARAERDDLPLLVDFWAPWCGPCRQMAPQFQAAAATLAGQVRLAKIDTQAHP--AVA 111
Query: 122 REFEVQAVPTVIGFRNGDPVDMVVGNADQDVIQTLVSKLSQKLATH 167
+Q +P I F G + G LV + KL
Sbjct: 112 GRHRIQGIPAFILFHKGRELARAAGARPA---SELVGFVRGKLGAR 154
>2yzu_A Thioredoxin; redox protein, electron transport, structural
genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A
Length = 109
Score = 65.8 bits (161), Expect = 2e-14
Identities = 27/104 (25%), Positives = 54/104 (51%), Gaps = 7/104 (6%)
Query: 65 DDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINV-ENGGGEIAR 122
+F +T+ VL F+ C C+ + P + +++ G + K++V EN + A
Sbjct: 9 QNFDETLGQHPLVLVDFWAEWCAPCRMIAPILEEIAKEYEGKLLVAKLDVDENP--KTAM 66
Query: 123 EFEVQAVPTVIGFRNGDPVDMVVGNADQDVIQTLVSKLSQKLAT 166
+ V ++PTVI F++G PV+++VG + + +K+ + L
Sbjct: 67 RYRVMSIPTVILFKDGQPVEVLVGAQPK---RNYQAKIEKHLPA 107
>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein
structure initiative, midwest CENT structural genomics;
1.99A {Desulfitobacterium hafniense dcb-2}
Length = 111
Score = 65.4 bits (160), Expect = 2e-14
Identities = 22/110 (20%), Positives = 53/110 (48%), Gaps = 10/110 (9%)
Query: 56 MAYLIIEKIDD--FKQTIRGRN-PVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKI 111
M+ +EK+D F+Q I L F + +C C+++ P + + F +
Sbjct: 4 MS---LEKLDTNTFEQLIYDEGKACLVMFSRKNCHVCQKVTPVLEELRLNYEESFGFYYV 60
Query: 112 NV-ENGGGEIAREFEVQAVPTVIGFRNGDPVDMVVGNADQDVIQTLVSKL 160
+V E + + F ++ VP ++ F++G+ + G+ + D ++ +++ +
Sbjct: 61 DVEEEK--TLFQRFSLKGVPQILYFKDGEYKGKMAGDVEDDEVEQMIADV 108
>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A
{Escherichia coli}
Length = 128
Score = 65.9 bits (161), Expect = 2e-14
Identities = 29/128 (22%), Positives = 54/128 (42%), Gaps = 9/128 (7%)
Query: 42 PPRAHLLNLIQAIQMAYLIIEKIDD-FKQT-IRGRNPVLAYFFKPSCGFCKQLEPKISTV 99
H L+ + II DD F ++ +L F+ CG K + P + +
Sbjct: 6 HHHHHSSGLVPRGSHSDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPAKMIAPILDEI 65
Query: 100 SETTSG-VEFVKINV-ENGGGEIAREFEVQAVPTVIGFRNGDPVDMVVGNADQDVIQTLV 157
++ G + K+N+ +N A ++ ++ +PT++ F+NG+ VG + L
Sbjct: 66 ADEYQGKLTVAKLNIDQNP--GTAPKYGIRGIPTLLLFKNGEVAATKVGALSK---GQLK 120
Query: 158 SKLSQKLA 165
L LA
Sbjct: 121 EFLDANLA 128
>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction,
regulation, phosphorylation, G proteins, thioredoxin,
vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB:
1b9y_C 1b9x_C
Length = 245
Score = 68.2 bits (166), Expect = 3e-14
Identities = 18/110 (16%), Positives = 42/110 (38%), Gaps = 5/110 (4%)
Query: 61 IEKIDDFKQTIRGRNP---VLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGG 117
+E + F +TI ++ + ++ C L + ++ V+F KI N G
Sbjct: 117 LESGEQFLETIEKEQKITTIVVHIYEDGIKGCDALNSSLICLAAEYPMVKFCKIKASNTG 176
Query: 118 GEIAREFEVQAVPTVIGFRNGDPVDMVVGNADQDVIQTLVSKLSQKLATH 167
F +PT++ ++ G+ + + +Q + + L +
Sbjct: 177 --AGDRFSSDVLPTLLVYKGGELLSNFISVTEQLAEEFFTGDVESFLNEY 224
>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A
{Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB:
1rqm_A 1quw_A 1nw2_A
Length = 105
Score = 64.6 bits (158), Expect = 4e-14
Identities = 29/97 (29%), Positives = 53/97 (54%), Gaps = 4/97 (4%)
Query: 65 DDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINV-ENGGGEIAR 122
+F+Q I+G PVL F+ CG C+ + P + +E + V K+NV EN E
Sbjct: 8 ANFQQAIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENP--ETTS 65
Query: 123 EFEVQAVPTVIGFRNGDPVDMVVGNADQDVIQTLVSK 159
+F + ++PT+I F+ G PV ++G ++ ++ ++
Sbjct: 66 QFGIMSIPTLILFKGGRPVKQLIGYQPKEQLEAQLAD 102
>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2,
protein structure initiative; NMR {Bacteroides
thetaiotaomicron}
Length = 130
Score = 65.2 bits (159), Expect = 5e-14
Identities = 24/111 (21%), Positives = 48/111 (43%), Gaps = 6/111 (5%)
Query: 65 DDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKIST---VSETTSG-VEFVKINVENG-GGE 119
+ K+ + F CG CK+L + V++ + +K+++E G G E
Sbjct: 18 EALKRAEVEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNRHFVNLKMDMEKGEGVE 77
Query: 120 IAREFEVQAVPTVIGFR-NGDPVDMVVGNADQDVIQTLVSKLSQKLATHYQ 169
+ +++ V A PT++ +G+ V +VG D + V + H+
Sbjct: 78 LRKKYGVHAYPTLLFINSSGEVVYRLVGAEDAPELLKKVKLGVESEGHHHH 128
>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport;
1.60A {Nostoc SP} SCOP: c.47.1.1
Length = 115
Score = 64.2 bits (157), Expect = 7e-14
Identities = 28/115 (24%), Positives = 52/115 (45%), Gaps = 9/115 (7%)
Query: 56 MAYLIIEKIDD-FKQT-IRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKIN 112
M+ +I D F+ ++ PVL YF+ CG C+ + P I+ + T S ++ VK+
Sbjct: 5 MSKGVITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLE 64
Query: 113 V-ENGGGEIAREFEVQAVPTVIGFRNGDPVDMVVGNADQDVIQTLVSKLSQKLAT 166
+ N ++++V+ VP + + +D G + L+S L L
Sbjct: 65 IDPNP--TTVKKYKVEGVPALRLVKGEQILDSTEGVISK---DKLLSFLDTHLNN 114
>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure
initiative, structural genomics; 2.30A {Methanosarcina
mazei}
Length = 140
Score = 64.8 bits (158), Expect = 8e-14
Identities = 30/127 (23%), Positives = 53/127 (41%), Gaps = 7/127 (5%)
Query: 54 IQMAYLIIEKIDD--FKQTIRGRN-PVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFV 109
+ + I + +D + Q + PV+ F+ P+C +CK +EP ++ F
Sbjct: 1 MSLNGSSIIEFEDMTWSQQVEDSKKPVVVMFYSPACPYCKAMEPYFEEYAKEYGSSAVFG 60
Query: 110 KINV-ENGGGEIAREFEVQAVPTVIGFRNGDPVDMVVGNADQDVIQTLVSKLSQKLATHY 168
+IN+ N A ++ VQ PT F +G PV VG +++ V + Q
Sbjct: 61 RINIATNP--WTAEKYGVQGTPTFKFFCHGRPVWEQVGQIYPSILKNAVRDMLQHGEECI 118
Query: 169 QVDLTTG 175
+ G
Sbjct: 119 RKSTPVG 125
>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport,
redox-active center; 1.50A {Bacillus subtilis} PDB:
2ipa_A 2gzy_A 2gzz_A
Length = 112
Score = 63.8 bits (156), Expect = 9e-14
Identities = 32/116 (27%), Positives = 58/116 (50%), Gaps = 11/116 (9%)
Query: 56 MAYLIIEKIDD-FKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINV 113
MA I++ D F VLA F+ P CG K + P + + + ++ VKI+V
Sbjct: 1 MA--IVKATDQSFSAETSEG-VVLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKIDV 57
Query: 114 -ENGGGEIAREFEVQAVPTVIGFRNGDPVDMVVGNADQDVIQTLVSKLSQKLATHY 168
EN E A ++ V ++PT++ ++G+ V+ VG + + L +++ L H+
Sbjct: 58 DENQ--ETAGKYGVMSIPTLLVLKDGEVVETSVGFKPK---EALQELVNKHLLEHH 108
>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule,
electron transport; 1.51A {Streptomyces coelicolor}
Length = 112
Score = 63.9 bits (156), Expect = 9e-14
Identities = 31/115 (26%), Positives = 56/115 (48%), Gaps = 9/115 (7%)
Query: 55 QMAYLIIEKIDD-FKQT-IRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKI 111
MA + DD F+Q ++ PVL F+ CG C+Q+ P + ++ +E VK+
Sbjct: 2 HMAGTLKHVTDDSFEQDVLKNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDKIEIVKL 61
Query: 112 NV-ENGGGEIAREFEVQAVPTVIGFRNGDPVDMVVGNADQDVIQTLVSKLSQKLA 165
N+ EN A ++ V ++PT+ ++ G+ +VG + +V L +A
Sbjct: 62 NIDENP--GTAAKYGVMSIPTLNVYQGGEVAKTIVGAKPK---AAIVRDLEDFIA 111
>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox
enzymology, oxidoreductase, redox-active center,
transport; 1.85A {Staphylococcus aureus} PDB: 2o7k_A
2o85_A 2o89_A 2o87_A
Length = 106
Score = 62.3 bits (152), Expect = 3e-13
Identities = 29/97 (29%), Positives = 52/97 (53%), Gaps = 5/97 (5%)
Query: 65 DDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINV-ENGGGEIAR 122
DF + L F+ +CG CK + P + ++ G + +K++V EN A
Sbjct: 11 ADFDSKVE-SGVQLVDFWATACGPCKMIAPVLEELAADYEGKADILKLDVDENP--STAA 67
Query: 123 EFEVQAVPTVIGFRNGDPVDMVVGNADQDVIQTLVSK 159
++EV ++PT+I F++G PVD VVG ++ + ++ K
Sbjct: 68 KYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDK 104
>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A
{Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB:
1j08_A
Length = 226
Score = 65.1 bits (158), Expect = 3e-13
Identities = 24/131 (18%), Positives = 43/131 (32%), Gaps = 8/131 (6%)
Query: 39 AALPPRAHLLNLIQAIQMAYLIIEKIDD--FKQTIRGRNPV-LAYFFKPSCGFCKQLEPK 95
LP ++ I + D + V + F P+C +C
Sbjct: 96 FGLPAGHEFAAFLEDIVDVSREETNLMDETKQAIRNIDQDVRILVFVTPTCPYCPLAVRM 155
Query: 96 ISTVSETTSGVEFVKINVENGGG----EIAREFEVQAVPTVIGFRNGDPVDMVVGNAD-Q 150
+ + KI + E A ++ V AVP ++ NG+ G +
Sbjct: 156 AHKFAIENTKAGKGKILGDMVEAIEYPEWADQYNVMAVPKIVIQVNGEDRVEFEGAYPEK 215
Query: 151 DVIQTLVSKLS 161
++ L+S LS
Sbjct: 216 MFLEKLLSALS 226
>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide
bond, endoplasmic reticulum isomerase, redox-active
center; 1.95A {Homo sapiens} PDB: 2dj2_A
Length = 241
Score = 64.9 bits (158), Expect = 4e-13
Identities = 29/118 (24%), Positives = 49/118 (41%), Gaps = 6/118 (5%)
Query: 65 DDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSET----TSGVEFVKINVENGGGEI 120
+F + ++ VL F+ P CG CKQ P+ ++ + KI+ + +
Sbjct: 23 ANFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDATS-ASVL 81
Query: 121 AREFEVQAVPTVIGFRNGDPVDMVVGNADQDVIQTLVSKLSQKLATHYQVDLTTGTPD 178
A F+V PT+ + G VD G+ Q+ I V ++SQ T T +
Sbjct: 82 ASRFDVSGYPTIKILKKGQAVD-YEGSRTQEEIVAKVREVSQPDWTPPPEVTLVLTKE 138
Score = 61.0 bits (148), Expect = 9e-12
Identities = 26/106 (24%), Positives = 50/106 (47%), Gaps = 6/106 (5%)
Query: 65 DDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG----VEFVKINVENGGGEI 120
++F + + + +L F+ P CG CK+L P+ ++ S + K++ ++
Sbjct: 138 ENFDEVVNDADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATA-ETDL 196
Query: 121 AREFEVQAVPTVIGFRNGDPVDMVVGNADQDVIQTLVSKLSQKLAT 166
A+ F+V PT+ FR G P D G ++ I + + S A+
Sbjct: 197 AKRFDVSGYPTLKIFRKGRPYDY-NGPREKYGIVDYMIEQSGAAAS 241
>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 140
Score = 62.0 bits (151), Expect = 7e-13
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
Query: 65 DDFKQTIRGRNPVLAYFFKPSCGFCKQLEPK----ISTVSETTSGVEFVKINVENGGGEI 120
+F + ++ VL F+ P CG CKQ P+ ST+ + + KI+ + +
Sbjct: 25 GNFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATS-ASML 83
Query: 121 AREFEVQAVPTVIGFRNGDPVD 142
A +F+V PT+ + G VD
Sbjct: 84 ASKFDVSGYPTIKILKKGQAVD 105
>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2,
protein STRU initiative; NMR {Bacteroides vulgatus}
Length = 136
Score = 62.1 bits (151), Expect = 7e-13
Identities = 19/102 (18%), Positives = 45/102 (44%), Gaps = 5/102 (4%)
Query: 71 IRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINV-ENGGGEIAREFEVQA 128
G P + F+ CG CK + P + +++ G + K++ + E+A F +++
Sbjct: 35 YEGDKPAIVDFYADWCGPCKMVAPILDELAKEYDGQIVIYKVDTEKEQ--ELAGAFGIRS 92
Query: 129 VPTVIGFRNGDPVDMVVGNADQDVIQTLVSK-LSQKLATHYQ 169
+P+++ +M G + + + + L +K H+
Sbjct: 93 IPSILFIPMEGKPEMAQGAMPKASFKKAIDEFLLKKEGHHHH 134
>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A
{Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A
2l59_A
Length = 121
Score = 61.2 bits (149), Expect = 1e-12
Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 8/104 (7%)
Query: 65 DDFKQT-IRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINV-ENGGGEIA 121
F + PVL F+ CG CK + P + ++ + + K++V N E A
Sbjct: 20 ASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNP--ETA 77
Query: 122 REFEVQAVPTVIGFRNGDPVDMVVGNADQDVIQTLVSKLSQKLA 165
R F+V ++PT+I F++G PV +VG + L+ +LS +
Sbjct: 78 RNFQVVSIPTLILFKDGQPVKRIVGAKGK---AALLRELSDVVP 118
>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell
cycle, mRNA processing, mRNA splicing, nucleus,
phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens}
PDB: 1xbs_A
Length = 149
Score = 61.5 bits (149), Expect = 1e-12
Identities = 17/97 (17%), Positives = 36/97 (37%), Gaps = 6/97 (6%)
Query: 65 DDFKQTIR--GRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINV-ENGGGEI 120
+ Q I+ ++ F + C QL+ +S S S ++V +
Sbjct: 12 KEVDQAIKSTAEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKMAAIYLVDVDQTA--VY 69
Query: 121 AREFEVQAVPTVIGFRNGDPVDMVVGNADQDVIQTLV 157
+ F++ +P+ + F NG + + G+ D
Sbjct: 70 TQYFDISYIPSTVFFFNGQHMKVDYGSPDHTKFVGSF 106
>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif,
endoplasmic reticulum, oxidore; 1.90A {Mus musculus}
Length = 122
Score = 60.8 bits (148), Expect = 2e-12
Identities = 18/107 (16%), Positives = 43/107 (40%), Gaps = 6/107 (5%)
Query: 65 DDFKQTI-RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINV-ENGGGEIA 121
F + + +G+ + F+ P CG C+ P+ ++ G V K++ +
Sbjct: 11 QTFNEKVLQGKTHWVVDFYAPWCGPCQNFAPEFELLARMIKGKVRAGKVDCQAYP--QTC 68
Query: 122 REFEVQAVPTVIGFRNGDPVDMVVGNADQDVI-QTLVSKLSQKLATH 167
++ ++A P+V ++ + +T+ + + KL T
Sbjct: 69 QKAGIKAYPSVKLYQYERAKKSIWEEQINSRDAKTIAALIYGKLETL 115
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, alternative
splicing, FBP interacting repressor, RRM, electron
transport; 2.20A {Escherichia coli O157}
Length = 222
Score = 62.9 bits (153), Expect = 2e-12
Identities = 27/119 (22%), Positives = 54/119 (45%), Gaps = 6/119 (5%)
Query: 56 MAYLIIEKIDD-FKQT-IRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKIN 112
M+ II DD F ++ +L F+ CG CK + P + +++ G + K+N
Sbjct: 10 MSDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLN 69
Query: 113 V-ENGGGEIAREFEVQAVPTVIGFRNGDPVDMVVGNADQDVIQTLVSKLSQKLATHYQV 170
+ +N A ++ ++ +PT++ F+NG+ VG + ++ + A V
Sbjct: 70 IDQNP--GTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANLAGSAMESTV 126
>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}
Length = 106
Score = 60.0 bits (146), Expect = 2e-12
Identities = 31/98 (31%), Positives = 59/98 (60%), Gaps = 5/98 (5%)
Query: 65 DDFKQ-TIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINV-ENGGGEIA 121
++F+Q ++ PVL F+ P CG C+ + P I +++ G V+ VK+NV EN A
Sbjct: 9 ENFEQEVLKSDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEGKVKVVKVNVDENP--NTA 66
Query: 122 REFEVQAVPTVIGFRNGDPVDMVVGNADQDVIQTLVSK 159
++ ++++PT++ F+NG VD +VG ++ ++ + K
Sbjct: 67 AQYGIRSIPTLLLFKNGQVVDRLVGAQPKEALKERIDK 104
>1mek_A Protein disulfide isomerase; electron transport, redox-active
center, endoplasmic reticulum; NMR {Homo sapiens} SCOP:
c.47.1.2
Length = 120
Score = 60.4 bits (147), Expect = 2e-12
Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Query: 65 DDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKI----STVSETTSGVEFVKINVENGGGEI 120
+F + + +L F+ P CG CK L P+ + S + K++ ++
Sbjct: 15 SNFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATE-ESDL 73
Query: 121 AREFEVQAVPTVIGFRNGDPVD 142
A+++ V+ PT+ FRNGD
Sbjct: 74 AQQYGVRGYPTIKFFRNGDTAS 95
>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP:
c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C
Length = 105
Score = 60.0 bits (146), Expect = 2e-12
Identities = 25/86 (29%), Positives = 48/86 (55%), Gaps = 4/86 (4%)
Query: 76 PVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINV-ENGGGEIAREFEVQAVPTVI 133
PV+ F+ P CG CK + P I +++ SG + K+N E IA ++ ++++PTV+
Sbjct: 20 PVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAP--GIATQYNIRSIPTVL 77
Query: 134 GFRNGDPVDMVVGNADQDVIQTLVSK 159
F+NG+ + ++G + + + K
Sbjct: 78 FFKNGERKESIIGAVPKSTLTDSIEK 103
>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A
{Acetobacter aceti}
Length = 107
Score = 60.0 bits (146), Expect = 2e-12
Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 5/85 (5%)
Query: 65 DDFKQT-IRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINV-ENGGGEIA 121
F Q ++ VL F+ CG CK + P + + + +G V K+N+ +N E
Sbjct: 10 SSFDQDVLKASGLVLVDFWAEWCGPCKMIGPALGEIGKEFAGKVTVAKVNIDDNP--ETP 67
Query: 122 REFEVQAVPTVIGFRNGDPVDMVVG 146
++V+++PT++ R+G +D VG
Sbjct: 68 NAYQVRSIPTLMLVRDGKVIDKKVG 92
>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP:
c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B*
1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B*
1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T*
2h6x_A ...
Length = 108
Score = 60.0 bits (146), Expect = 3e-12
Identities = 25/104 (24%), Positives = 48/104 (46%), Gaps = 8/104 (7%)
Query: 65 DDFKQT-IRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINV-ENGGGEIA 121
D F ++ +L F+ CG CK + P + +++ G + K+N+ +N A
Sbjct: 10 DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP--GTA 67
Query: 122 REFEVQAVPTVIGFRNGDPVDMVVGNADQDVIQTLVSKLSQKLA 165
++ ++ +PT++ F+NG+ VG + L L LA
Sbjct: 68 PKYGIRGIPTLLLFKNGEVAATKVGALSK---GQLKEFLDANLA 108
>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction,
regulation, phosphorylation, G proteins, thioredoxin,
vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6
Length = 217
Score = 62.0 bits (150), Expect = 3e-12
Identities = 19/110 (17%), Positives = 42/110 (38%), Gaps = 5/110 (4%)
Query: 61 IEKIDDFKQTIRGRNP---VLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGG 117
+E + F +TI ++ ++ C L + ++ V+F KI N G
Sbjct: 104 LETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEYPMVKFCKIRASNTG 163
Query: 118 GEIAREFEVQAVPTVIGFRNGDPVDMVVGNADQDVIQTLVSKLSQKLATH 167
F +PT++ ++ G+ + + A+Q + + L +
Sbjct: 164 --AGDRFSSDVLPTLLVYKGGELISNFISVAEQFAEDFFAADVESFLNEY 211
>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic
thioredoxin, oxidoreductase; NMR {Chlamydomonas
reinhardtii} SCOP: c.47.1.1
Length = 107
Score = 59.2 bits (144), Expect = 4e-12
Identities = 20/73 (27%), Positives = 42/73 (57%), Gaps = 4/73 (5%)
Query: 76 PVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINV-ENGGGEIAREFEVQAVPTVI 133
PVL F+ P CG C+ + P + ++ ++ VK+N E+ +A E+ ++++PT++
Sbjct: 21 PVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESP--NVASEYGIRSIPTIM 78
Query: 134 GFRNGDPVDMVVG 146
F+ G + ++G
Sbjct: 79 VFKGGKKCETIIG 91
>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis}
PDB: 3hyp_A
Length = 141
Score = 59.9 bits (145), Expect = 5e-12
Identities = 23/105 (21%), Positives = 46/105 (43%), Gaps = 7/105 (6%)
Query: 65 DDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINV-ENGGGEIAR 122
+ G P + F+ CG CK + P + +S+ +G + K+NV + E+AR
Sbjct: 42 HSKEWKYLGDKPAIVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVDKEP--ELAR 99
Query: 123 EFEVQAVPTVIGFRNGDPVDMVVGNADQDVIQTLVSKLSQKLATH 167
+F +Q++PT+ + +G + + L + + L
Sbjct: 100 DFGIQSIPTIWFVPMKGEPQVNMGALSK---EQLKGYIDKVLLKQ 141
>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP:
c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A
Length = 504
Score = 62.9 bits (152), Expect = 6e-12
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 65 DDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG--VEFVKINVENGGGEIAR 122
D F + I+ + VLA FF P CG CK + P+ +ET + +I+ ++
Sbjct: 22 DSFNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTE-NQDLCM 80
Query: 123 EFEVQAVPTVIGFRNGDP 140
E + P++ F+N D
Sbjct: 81 EHNIPGFPSLKIFKNSDV 98
Score = 49.5 bits (117), Expect = 2e-07
Identities = 19/85 (22%), Positives = 36/85 (42%), Gaps = 8/85 (9%)
Query: 65 DDFKQTIRGRN-PVLAYFFKPSCGFCKQLEPKISTVSET----TSGVEFVKINVENGGGE 119
+ + + VL ++ P CG CK+L P +++T TS V K++
Sbjct: 366 KNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTE---N 422
Query: 120 IAREFEVQAVPTVIGFRNGDPVDMV 144
R ++ PT++ + G + V
Sbjct: 423 DVRGVVIEGYPTIVLYPGGKKSESV 447
>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone,
endoplasmic reticulum, S response; 2.60A {Homo sapiens}
Length = 382
Score = 60.8 bits (147), Expect = 2e-11
Identities = 17/84 (20%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 65 DDFKQTIRGRNPVLAYFFKPSCGFCKQLEP-------KISTVSETTSGVEFVKINVENGG 117
++ + + + L F+ C F + L P I + V F +++ +
Sbjct: 13 ENIDEILNNADVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFARVDCDQ-H 71
Query: 118 GEIAREFEVQAVPTVIGFRNGDPV 141
+IA+ + + PT+ FRNG +
Sbjct: 72 SDIAQRYRISKYPTLKLFRNGMMM 95
>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 126
Score = 56.6 bits (137), Expect = 6e-11
Identities = 16/80 (20%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
Query: 65 DDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG--VEFVKINVENGGGEIAR 122
+++++ + G + F+ P C C+ L+P+ + +E V K++V ++
Sbjct: 15 ENWRELLEG--DWMIEFYAPWCPACQNLQPEWESFAEWGEDLEVNIAKVDVTEQP-GLSG 71
Query: 123 EFEVQAVPTVIGFRNGDPVD 142
F + A+PT+ ++G+
Sbjct: 72 RFIINALPTIYHCKDGEFRR 91
>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC
structure funded by NIH, protein structure initiative,
PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1
Length = 85
Score = 55.4 bits (134), Expect = 7e-11
Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 11/91 (12%)
Query: 76 PVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINV-ENGGGEIAREFEVQAVPTVI 133
+ F P C C + + V+ VE INV EN + A E+ + AVPT++
Sbjct: 4 VKIELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVMENP--QKAMEYGIMAVPTIV 61
Query: 134 GFRNGDPVDMVVGNADQDVIQTLVSKLSQKL 164
+ + +G ++ LV + ++L
Sbjct: 62 INGDVE----FIGAPTKE---ALVEAIKKRL 85
>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold,
isomerase; 2.00A {Homo sapiens} PDB: 2diz_A
Length = 111
Score = 56.1 bits (136), Expect = 7e-11
Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 6/82 (7%)
Query: 65 DDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKI----STVSETTSGVEFVKINVENGGGEI 120
++F TI F+ P CG CK L P +GV+ +++ I
Sbjct: 13 NNFDDTI-AEGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTA-ERNI 70
Query: 121 AREFEVQAVPTVIGFRNGDPVD 142
++ V+ PT++ FR G V
Sbjct: 71 CSKYSVRGYPTLLLFRGGKKVS 92
>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31
protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 137
Score = 56.4 bits (136), Expect = 1e-10
Identities = 18/104 (17%), Positives = 39/104 (37%), Gaps = 15/104 (14%)
Query: 56 MAYLIIEKIDD--FKQTIRG--RNPVLAYFFKPSCGFCKQLEPKISTVSE--TTSGVEFV 109
+ I+ +D + + R + FF C+ P + +S +G+ F
Sbjct: 4 GSSGYIKYFNDKTIDEELERDKRVTWIVEFFANWSNDCQSFAPIYADLSLKYNCTGLNFG 63
Query: 110 KINV-ENGGGEIAREFEVQA------VPTVIGFRNGDPVDMVVG 146
K++V +++ ++V +PT+I F+ G
Sbjct: 64 KVDVGRYT--DVSTRYKVSTSPLTKQLPTLILFQGGKEAMRRPQ 105
>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum,
glycoprotein, immunoglobulin domain, microsome, protein
disulfide isomerase, thioredoxin-like FO like domain;
HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A
Length = 481
Score = 59.1 bits (142), Expect = 1e-10
Identities = 24/93 (25%), Positives = 37/93 (39%), Gaps = 5/93 (5%)
Query: 65 DDFKQTI---RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENGGGEI 120
D+F+ I +L FF P CG K+L P+ + G V K++
Sbjct: 9 DNFESRISDTGSAGLMLVEFFAPWCGHAKRLAPEYEAAATRLKGIVPLAKVDCTA-NTNT 67
Query: 121 AREFEVQAVPTVIGFRNGDPVDMVVGNADQDVI 153
++ V PT+ FR+G+ G D I
Sbjct: 68 CNKYGVSGYPTLKIFRDGEEAGAYDGPRTADGI 100
Score = 51.4 bits (122), Expect = 4e-08
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 6/84 (7%)
Query: 65 DDFKQTIRGRN-PVLAYFFKPSCGFCKQLEPKISTVSETTSG---VEFVKINVENGGGEI 120
++F + + N VL F+ P CG CK LEPK + E S + K++ ++
Sbjct: 360 ENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATA--NDV 417
Query: 121 AREFEVQAVPTVIGFRNGDPVDMV 144
+EV+ PT+ ++
Sbjct: 418 PSPYEVRGFPTIYFSPANKKLNPK 441
>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich,
structural genomics, PSI, protein structure initiative;
HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP:
c.47.1.1
Length = 118
Score = 55.7 bits (134), Expect = 1e-10
Identities = 13/106 (12%), Positives = 32/106 (30%), Gaps = 6/106 (5%)
Query: 57 AYLIIEKIDDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENG 116
L + + ++ + + + + +C +C++ +S V T IN E
Sbjct: 12 KDLEVTTVVRAQEALDKKETATFFIGRKTCPYCRKFAGTLSGVVAET-KAHIYFINSEEP 70
Query: 117 GG-----EIAREFEVQAVPTVIGFRNGDPVDMVVGNADQDVIQTLV 157
+ + VP + +G + I+
Sbjct: 71 SQLNDLQAFRSRYGIPTVPGFVHITDGQINVRCDSSMSAQEIKDFA 116
>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy,
IGE, conformational diversity, multispecficity,
redox-active center; 2.77A {Escherichia coli} SCOP:
c.47.1.1
Length = 123
Score = 54.0 bits (130), Expect = 5e-10
Identities = 29/128 (22%), Positives = 53/128 (41%), Gaps = 23/128 (17%)
Query: 56 MAYLIIEKIDD-FKQT-IRGRNPVLAYFFKPSCG--------------FCKQLEPKISTV 99
M+ II DD F ++ +L F+ CG CK + P + +
Sbjct: 1 MSDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEI 60
Query: 100 SETTSG-VEFVKINV-ENGGGEIAREFEVQAVPTVIGFRNGDPVDMVVGNADQDVIQTLV 157
++ G + K+N+ +N A ++ ++ +PT++ F+NG+ VG + L
Sbjct: 61 ADEYQGKLTVAKLNIDQNP--GTAPKYGIRGIPTLLLFKNGEVAATKVGALSK---GQLK 115
Query: 158 SKLSQKLA 165
L LA
Sbjct: 116 EFLDANLA 123
>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus
musculus} PDB: 3t59_A*
Length = 519
Score = 56.9 bits (136), Expect = 7e-10
Identities = 21/114 (18%), Positives = 34/114 (29%), Gaps = 11/114 (9%)
Query: 65 DDFKQTIRGRN-PVLAYFFKPSCGFCKQLEPKISTVSETTSG----VEFVKIN-VENGGG 118
D + T+ G + FF CG P ++ + ++ E
Sbjct: 20 DSVRPTVLGSSSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAEETNS 79
Query: 119 EIAREFEVQAVPTVIGFRNG-----DPVDMVVGNADQDVIQTLVSKLSQKLATH 167
+ REF + PTV F+ G Q + L+ L T
Sbjct: 80 AVCREFNIAGFPTVRFFQAFTKNGSGATLPGAGANVQTLRMRLIDALESHRDTW 133
>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC,
endoplasmic reticulum, glycoprotein, redox-active
center; 2.00A {Saccharomyces cerevisiae}
Length = 298
Score = 56.3 bits (135), Expect = 7e-10
Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
Query: 65 DDFKQTIRGRN-PVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINV-ENGGGEIA 121
F + I N L F+ P CG CK+L ++ G V+ +N N +
Sbjct: 25 KSFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGVVQVAAVNCDLNKNKALC 84
Query: 122 REFEVQAVPTVIGFRNG 138
+++V PT++ FR
Sbjct: 85 AKYDVNGFPTLMVFRPP 101
>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin
like domain, redox, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 133
Score = 53.6 bits (129), Expect = 1e-09
Identities = 22/107 (20%), Positives = 41/107 (38%), Gaps = 7/107 (6%)
Query: 65 DDFKQTIRGRN-PVLAYFFKPSCGFCKQLEPKISTV-----SETTSGVEFVKINVENGGG 118
D F + + + F+ P CG CK LEP+ + +T V+ ++
Sbjct: 15 DSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATV-NQ 73
Query: 119 EIAREFEVQAVPTVIGFRNGDPVDMVVGNADQDVIQTLVSKLSQKLA 165
+A + ++ PT+ F+ G+ G + I + L A
Sbjct: 74 VLASRYGIRGFPTIKIFQKGESPVDYDGGRTRSDIVSRALDLFSDNA 120
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin,
endoplasmic reticulum, oxidoreducta; 2.40A {Mus
musculus}
Length = 780
Score = 55.9 bits (134), Expect = 2e-09
Identities = 20/134 (14%), Positives = 41/134 (30%), Gaps = 6/134 (4%)
Query: 65 DDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENGGGEIARE 123
+F + F+ P L P ++ G + +N + + R
Sbjct: 124 REFDAAVNSGELWFVNFYSPGSSHSHDLAPTWREFAKEVDGLLRIGAVNCGD-DRMLCRM 182
Query: 124 FEVQAVPTVIGFRNGDPVDMVVGNADQDVIQTLVSKLSQKLATHYQVDLTTGTPDQVYLI 183
V + P++ FR+G G+ ++ + + + T L+TG
Sbjct: 183 KGVNSYPSLFIFRSGMAAVKYNGDRSKESLVAFAMQHVRSTVTE----LSTGNFVNAIET 238
Query: 184 VLLRYDQVYLIVCS 197
+ CS
Sbjct: 239 AFAAGVGWLITFCS 252
Score = 54.0 bits (129), Expect = 5e-09
Identities = 15/80 (18%), Positives = 30/80 (37%), Gaps = 4/80 (5%)
Query: 65 DDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENGGGEIARE 123
+F + + P L FF P + L P++ S G ++ ++ +
Sbjct: 448 QNFPAS--DKEPWLVDFFAPWSPPSRALLPELRKASTLLYGQLKVGTLDCTI-HEGLCNM 504
Query: 124 FEVQAVPTVIGFRNGDPVDM 143
+ +QA PT + F +
Sbjct: 505 YNIQAYPTTVVFNQSSIHEY 524
Score = 53.2 bits (127), Expect = 1e-08
Identities = 12/76 (15%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Query: 65 DDFKQTI-RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENGGGEIAR 122
F + + +G+ + F+ P G + P+ ++ G V K++ + + +
Sbjct: 665 QTFNEKVLQGKTHWVVDFYAPWSGPSQNFAPEFELLARMIKGKVRAGKVDCQA-YPQTCQ 723
Query: 123 EFEVQAVPTVIGFRNG 138
+ ++A P+V ++
Sbjct: 724 KAGIKAYPSVKLYQYE 739
Score = 50.5 bits (120), Expect = 1e-07
Identities = 11/80 (13%), Positives = 27/80 (33%), Gaps = 5/80 (6%)
Query: 65 DDFKQTIRGRN---PVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENGGGEI 120
F + ++ R + F+ P + L P+ ++ T +G + ++
Sbjct: 551 STFNELVKQRKHDEVWMVDFYSPWSHPSQVLMPEWKRMARTLTGLINVGSVDCGQ-YHSF 609
Query: 121 AREFEVQAVPTVIGFRNGDP 140
+ VQ P + +
Sbjct: 610 CTQENVQRYPEIRFYPQKSS 629
Score = 36.7 bits (84), Expect = 0.004
Identities = 8/78 (10%), Positives = 19/78 (24%), Gaps = 5/78 (6%)
Query: 65 DDFKQTIRGRNPVLAYFFKPSCGFCKQLEP---KISTVSETTSGVEFVKINVENGGGEIA 121
+F I + C + ++ V ++ + +
Sbjct: 230 GNFVNAIETAFAAGVGWLITFCSKGEDCLTSQTRLRLSGMLDGLVNVGWVDCDA-QDSLC 288
Query: 122 REFEVQAVPTVIGFRNGD 139
+ + A T F G
Sbjct: 289 KSLDTTASTTAY-FPPGA 305
Score = 29.7 bits (66), Expect = 0.79
Identities = 8/83 (9%), Positives = 25/83 (30%), Gaps = 6/83 (7%)
Query: 59 LIIEKIDDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG--VEFVKINVENG 116
+ + + L +F +P++ + ++ V+ + +
Sbjct: 336 DFELLSANQLEDRLAHHRWLVFFHF--GKNENANDPELKKLKTLLKNEHIQVVRFDCSS- 392
Query: 117 GGEIAREFEVQAVPTVIGFRNGD 139
I + V P++ F+
Sbjct: 393 APGICSDLYVFQ-PSLAVFKGQG 414
>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform;
glycoprotein, calcium-binding, muscle protein, metal
binding protein; 2.40A {Canis lupus familiaris} PDB:
2vaf_A
Length = 350
Score = 55.1 bits (132), Expect = 2e-09
Identities = 10/87 (11%), Positives = 32/87 (36%), Gaps = 11/87 (12%)
Query: 65 DDFKQTIRGRNPVLAYFFKPSCGFCKQLEP---------KISTVSETTSGVEFVKINVEN 115
+FKQ ++ + VL ++ S K + ++ + FV ++ +
Sbjct: 19 KNFKQVLK-KYDVLCLYYHESVSSDKVAQKQFQLKEIVLELVAQVLEHKDIGFVMVDAKK 77
Query: 116 GGGEIAREFEVQAVPTVIGFRNGDPVD 142
++A++ ++ + ++
Sbjct: 78 -EAKLAKKLGFDEEGSLYVLKGDRTIE 103
>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus
cuniculus} PDB: 1a8y_A 3trq_A* 3trp_A* 3uom_A
Length = 367
Score = 55.4 bits (133), Expect = 2e-09
Identities = 9/86 (10%), Positives = 30/86 (34%), Gaps = 9/86 (10%)
Query: 65 DDFKQTIRGRNPVLAYFFKPSCGFCKQ------LEPKISTVSET--TSGVEFVKINVENG 116
++K + + + +P E + ++ GV F ++ E
Sbjct: 21 KNYKNVFKKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEK- 79
Query: 117 GGEIAREFEVQAVPTVIGFRNGDPVD 142
+A++ + ++ F+ + ++
Sbjct: 80 DAAVAKKLGLTEEDSIYVFKEDEVIE 105
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 53.9 bits (129), Expect = 7e-09
Identities = 41/215 (19%), Positives = 70/215 (32%), Gaps = 88/215 (40%)
Query: 35 LSARAALPPRAHL------LNLIQAIQMA-YLIIEKI-----DDFKQTIRG--------- 73
L + P + +L LI IQ+A Y++ K+ + + ++G
Sbjct: 219 LENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLV 278
Query: 74 ---------------RNPVLAY---FFKPSCGF-CKQLEPKISTVSETTSGVEFVKINVE 114
+ A FF G C + P S ++ ++E
Sbjct: 279 TAVAIAETDSWESFFVSVRKAITVLFF---IGVRCYEAYPNTSLPPSI------LEDSLE 329
Query: 115 NGGGEIAREFEVQAVPTVIGFRNGDPVDM-VVGNADQDVIQTLVSKLSQKLATHYQVDLT 173
N G VP+ P M + N Q+ +Q V+K + L QV+++
Sbjct: 330 NNEG----------VPS--------P--MLSISNLTQEQVQDYVNKTNSHLPAGKQVEIS 369
Query: 174 ----------TGTPDQVY-LIVLLR-------YDQ 190
+G P +Y L + LR DQ
Sbjct: 370 LVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQ 404
Score = 31.2 bits (70), Expect = 0.26
Identities = 37/206 (17%), Positives = 73/206 (35%), Gaps = 61/206 (29%)
Query: 3 ITSKLSPETITEMFSFHRSAAAHVTFHNSGGKLSARA-ALPP--RAHLLNLIQAIQMAYL 59
+T+KL T E+ S+ + A H S G ++A A A + +++ +AI + +
Sbjct: 251 VTAKLLGFTPGELRSYLKGATGH-----SQGLVTAVAIAETDSWESFFVSVRKAITVLFF 305
Query: 60 I--------------IEKIDDFKQTIRGRNPVLAYFFKPSCGFC------KQLEPKISTV 99
I ++D + G PS +Q++ ++
Sbjct: 306 IGVRCYEAYPNTSLPPSILEDSLENNEG---------VPSPMLSISNLTQEQVQDYVNKT 356
Query: 100 SETTSGVEFVKINVENGGGEIAREFEVQAVPTVIGFRNGDPVDMVVGN-------ADQDV 152
+ + V+I++ NG A+ V+ G P + N A +
Sbjct: 357 NSHLPAGKQVEISLVNG----AKNL-------VVS---GPPQSLYGLNLTLRKAKAPSGL 402
Query: 153 IQTLVSKLSQ-KLATHYQVDLTTGTP 177
Q+ + S+ KL + L +P
Sbjct: 403 DQSRI-PFSERKLKFSNRF-LPVASP 426
>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing
protein 7, endoplasmic reticulum, redox-active center,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 130
Score = 51.2 bits (123), Expect = 8e-09
Identities = 16/77 (20%), Positives = 32/77 (41%), Gaps = 3/77 (3%)
Query: 65 DDFKQTIRGRN-PVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENGGGEIAR 122
+F + + + L F+ P CG C++L P+ + V+ +N + +
Sbjct: 25 SNFNREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAATALKDVVKVGAVNADK-HQSLGG 83
Query: 123 EFEVQAVPTVIGFRNGD 139
++ VQ PT+ F
Sbjct: 84 QYGVQGFPTIKIFGANK 100
>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like,
C-terminal domain, reduced form at PH7, oxidoreductase;
0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A
2fwf_A 2fwg_A 1vrs_D 1uc7_A
Length = 134
Score = 50.6 bits (121), Expect = 1e-08
Identities = 24/127 (18%), Positives = 49/127 (38%), Gaps = 16/127 (12%)
Query: 55 QMAYLIIEKIDDFKQTI---RGRNPVLAYFFKPSCGFCKQLEPKI---STVSETTSGVEF 108
+ + I+ +D+ Q + +G+ PV+ + C CK+ E V + +
Sbjct: 10 HLNFTQIKTVDELNQALVEAKGK-PVMLDLYADWCVACKEFEKYTFSDPQVQKALADTVL 68
Query: 109 VKINVENGGGE---IAREFEVQAVPTVIGF-RNGDPVDM--VVGNADQDVIQTLVSKLSQ 162
++ NV + + + V +PT++ F G V G D + T + L
Sbjct: 69 LQANVTANDAQDVALLKHLNVLGLPTILFFDGQGQEHPQARVTGFMDAE---TFSAHLRD 125
Query: 163 KLATHYQ 169
+ H+
Sbjct: 126 RQPHHHH 132
>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin,
thioredoxin fold, oxidoreductase, reductive methylation;
HET: MLY; 2.05A {Homo sapiens}
Length = 244
Score = 51.5 bits (123), Expect = 2e-08
Identities = 24/123 (19%), Positives = 37/123 (30%), Gaps = 7/123 (5%)
Query: 65 DDFKQTIRGRN-PVLAYFFKPSCGFCKQLEPKI----STVSETTSGVEFVKIN-VENGGG 118
D + + G FF CG C P V + ++ E
Sbjct: 20 DTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEETNS 79
Query: 119 EIAREFEVQAVPTVIGFRNGD-PVDMVVGNADQDVIQTLVSKLSQKLATHYQVDLTTGTP 177
+ R+F + PTV F V +QTL +L L +H+ P
Sbjct: 80 AVCRDFNIPGFPTVRFFXAFTXNGSGAVFPVAGADVQTLRERLIDALESHHDTWPPACPP 139
Query: 178 DQV 180
+
Sbjct: 140 LEP 142
Score = 32.7 bits (74), Expect = 0.058
Identities = 13/88 (14%), Positives = 27/88 (30%), Gaps = 7/88 (7%)
Query: 75 NPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTVIG 134
+ F +++ + GV ++ + R+F V P+
Sbjct: 158 EYLALIFEXGGSYLAREVALDL----SQHKGVAVRRVLNTEA--NVVRKFGVTDFPSCYL 211
Query: 135 F-RNGDPVDMVVGNADQDVIQTLVSKLS 161
RNG + V + + +LS
Sbjct: 212 LFRNGSVSRVPVLMESRSFYTAYLQRLS 239
>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold,
sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A
{Trypanosoma brucei} PDB: 3qd9_A*
Length = 470
Score = 51.5 bits (122), Expect = 4e-08
Identities = 16/89 (17%), Positives = 32/89 (35%), Gaps = 12/89 (13%)
Query: 65 DDFKQTIRGRN--PVLAYFFKPSCGFCKQLEP---------KISTVSETTSGVEFVKINV 113
DDF + R P + F+ CG C++ K+ + +N
Sbjct: 31 DDFSRVHRVAPLCPWIVLFYNDGCGACRRYASTFSKFAGGLKVEHGKDALQIATAAAVNC 90
Query: 114 ENGGGEIAREFEVQAVPTVIGFRNGDPVD 142
+ ++ R++++ VP + F D
Sbjct: 91 AS-EVDLCRKYDINFVPRLFFFYPRDSCR 118
>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase,
sulfur oxidation, thiol- disulfide oxidoreductase; HET:
MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*
Length = 116
Score = 46.2 bits (109), Expect = 4e-07
Identities = 14/95 (14%), Positives = 34/95 (35%), Gaps = 6/95 (6%)
Query: 75 NPVLAYFFKPSCGFCKQLEPKISTVSETTS-----GVEFVKINVENGGGEIAREFEVQAV 129
L F +P C +C + + +I+ T V+ +++ + + V
Sbjct: 19 ELRLLMFEQPGCLYCARWDAEIAPQYPLTDEGRAAPVQRLQMR-DPLPPGLELARPVTFT 77
Query: 130 PTVIGFRNGDPVDMVVGNADQDVIQTLVSKLSQKL 164
PT + + G +D ++++L +
Sbjct: 78 PTFVLMAGDVESGRLEGYPGEDFFWPMLARLIGQA 112
>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR
{Methanothermobacter thermautotrophicusorganism_taxid}
SCOP: c.47.1.1
Length = 85
Score = 44.6 bits (106), Expect = 6e-07
Identities = 12/55 (21%), Positives = 24/55 (43%), Gaps = 4/55 (7%)
Query: 81 FFKPSCGFCKQLEPKISTVSETTSG-VEFVKINV-ENGGGEIAREFEVQAVPTVI 133
F P+C +C + + ++ KI++ + E A E+ + AVP +
Sbjct: 8 FTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVD--REKAIEYGLMAVPAIA 60
>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A
{Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A
Length = 361
Score = 47.4 bits (112), Expect = 8e-07
Identities = 19/76 (25%), Positives = 28/76 (36%), Gaps = 1/76 (1%)
Query: 65 DDFKQTIRGRN-PVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIARE 123
+F+ V F+ P CG CKQL P + ET E + I +
Sbjct: 257 KNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANEVEA 316
Query: 124 FEVQAVPTVIGFRNGD 139
+V + PT+ F
Sbjct: 317 VKVHSFPTLKFFPASA 332
Score = 31.6 bits (71), Expect = 0.16
Identities = 16/115 (13%), Positives = 34/115 (29%), Gaps = 6/115 (5%)
Query: 59 LIIEKIDDFKQTI--RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINV-E 114
L+IE + I + F S T +E+ G + F+ I+
Sbjct: 118 LVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGKILFIFIDSDH 177
Query: 115 NGGGEIAREFEVQA--VPTVIGFRNGDPVDMVVGNADQDVIQTLVSKLSQKLATH 167
I F ++ P V + + +++ + + + L
Sbjct: 178 TDNQRILEFFGLKKEECPAVRLITLEEEMTKYKPESEELTAERITEFCHRFLEGK 232
>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19,
structural genomics, PSI, protein structure initiative;
1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A
Length = 164
Score = 45.4 bits (107), Expect = 2e-06
Identities = 18/95 (18%), Positives = 36/95 (37%), Gaps = 4/95 (4%)
Query: 76 PVLAYFFKPSCGFCKQLEPKISTVSETTSG-VEFVKINVENGGGEIAREFEVQA--VPTV 132
P++ K CG CK L+PK + +E + FV +N+E+ +F +P +
Sbjct: 48 PLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEPKDEDFSPDGGYIPRI 107
Query: 133 IGF-RNGDPVDMVVGNADQDVIQTLVSKLSQKLAT 166
+ +G ++ + Q +
Sbjct: 108 LFLDPSGKVHPEIINENGNPSYKYFYVSAEQVVQG 142
>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics,
NPPSFA, national project protein structural and
functional analyses; 2.30A {Aquifex aeolicus} PDB:
2ayt_A
Length = 229
Score = 45.8 bits (108), Expect = 2e-06
Identities = 23/132 (17%), Positives = 44/132 (33%), Gaps = 9/132 (6%)
Query: 39 AALPPRAHLLNLIQAIQMAYLIIEKID-DFKQTIRG--RNPVLAYFFKPSCGFCKQLEPK 95
LP LI I ++ + ++ + F SCG+C
Sbjct: 98 IGLPAGLEFTTLINGIFHVSQRKPQLSEKTLELLQVVDIPIEIWVFVTTSCGYCPSAAVM 157
Query: 96 ISTVSETTSGVEFVKINV-ENGGGEIAREFEVQAVPTVIGFRNGDPVDMVVGNADQDVIQ 154
+ + I+ EN ++A +F+V VP + N + VG ++
Sbjct: 158 AWDFALANDYITSKVIDASENQ--DLAEQFQVVGVPKI--VINKGVAEF-VGAQPENAFL 212
Query: 155 TLVSKLSQKLAT 166
+ + +KL
Sbjct: 213 GYIMAVYEKLKR 224
Score = 39.3 bits (91), Expect = 3e-04
Identities = 16/110 (14%), Positives = 39/110 (35%), Gaps = 5/110 (4%)
Query: 67 FKQTIRGRNPVLAYFFKPSCGFCKQLEP---KISTVSETTSGVEFVKINVENGG--GEIA 121
++ + + + C C+ E + V G + +K+++ + E
Sbjct: 15 AQKEFKEPVSIKLFSQAIGCESCQTAEELLKETVEVIGEAVGQDKIKLDIYSPFTHKEET 74
Query: 122 REFEVQAVPTVIGFRNGDPVDMVVGNADQDVIQTLVSKLSQKLATHYQVD 171
++ V VPT++ + D +G TL++ + Q+
Sbjct: 75 EKYGVDRVPTIVIEGDKDYGIRYIGLPAGLEFTTLINGIFHVSQRKPQLS 124
>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 133
Score = 43.9 bits (104), Expect = 3e-06
Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 7/85 (8%)
Query: 65 DDFKQTIRGRN-PVLAYFFKPSCGFCKQLEP---KISTVSETTSGVEFVKINV-ENGGGE 119
F + VL F+ P CG CKQLEP + + + K++ N
Sbjct: 15 KTFDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDATAN--DI 72
Query: 120 IAREFEVQAVPTVIGFRNGDPVDMV 144
+++V+ PT+ +GD + +
Sbjct: 73 TNDQYKVEGFPTIYFAPSGDKKNPI 97
>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural
genomics, PSI, protein structure initiative; 1.12A
{Mycobacterium tuberculosis} SCOP: c.47.1.10
Length = 136
Score = 43.4 bits (103), Expect = 5e-06
Identities = 24/115 (20%), Positives = 37/115 (32%), Gaps = 27/115 (23%)
Query: 72 RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVEN---------------- 115
+G+ P + +F+ P C FC P +S V+ V FV I
Sbjct: 23 QGK-PAVLWFWTPWCPFCNAEAPSLSQVAAANPAVTFVGIATRADVGAMQSFVSKYNLNF 81
Query: 116 -----GGGEIAREFEVQAVPT--VIGFRNG--DPVDMVVGNADQDVIQTLVSKLS 161
G I + V P +G V+ QD + V+ L+
Sbjct: 82 TNLNDADGVIWARYNVPWQPAFVFYR-ADGTSTFVNNPTAAMSQDELSGRVAALT 135
>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain
(residues 33-153), D domain (residues 154-261), CHA;
2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A
Length = 240
Score = 43.4 bits (102), Expect = 1e-05
Identities = 16/82 (19%), Positives = 34/82 (41%), Gaps = 7/82 (8%)
Query: 65 DDFKQTIRGRNPVLAYFFKPSCGFCKQLEP-KISTVSETTSGVEFVKINVENGGG----E 119
F + I VL F KQ E +++ S ++ + ++ + + G E
Sbjct: 13 VTFYKVIPKSKFVLVKFDTQYPYGEKQDEFKRLAENSASSDDLLVAEVGISDYGDKLNME 72
Query: 120 IAREFEVQAV--PTVIGFRNGD 139
++ ++++ P FR+GD
Sbjct: 73 LSEKYKLDKESYPVFYLFRDGD 94
>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics
research consortium, oxidoreductase; NMR {Thermus
thermophilus}
Length = 130
Score = 41.2 bits (97), Expect = 2e-05
Identities = 20/107 (18%), Positives = 38/107 (35%), Gaps = 13/107 (12%)
Query: 76 PVLAYFFKPSCGFCKQLEPKI---STVSETTSGV-EFVKINVENGGG-EIAREFEVQAVP 130
V+ YF C +C+Q+ + VS ++V+ G E+AR + V P
Sbjct: 21 MVMVYFHSEHCPYCQQMNTFVLSDPGVSRLLEARFVVASVSVDTPEGQELARRYRVPGTP 80
Query: 131 TVIGF----RNGDPVDMVVG--NADQ--DVIQTLVSKLSQKLATHYQ 169
T + + V + G + ++ + K H+
Sbjct: 81 TFVFLVPKAGAWEEVGRLFGSRPRAEFLKELRQVCVKGGACGEGHHH 127
>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A
{Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A
Length = 123
Score = 41.2 bits (96), Expect = 3e-05
Identities = 19/100 (19%), Positives = 38/100 (38%), Gaps = 16/100 (16%)
Query: 55 QMAYLIIEKIDDFKQTIRGRN--PVLAYFF-------KPSCGFCKQLEPKI-STVSETTS 104
+ + + ++F + + N + AYF K C C Q EP + + +
Sbjct: 3 RYEEVSVSGFEEFHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISE 62
Query: 105 GVEFVKINVE------NGGGEIAREFEVQAVPTVIGFRNG 138
G F+ V + + + +V AVPT++ +
Sbjct: 63 GCVFIYCQVGEKPYWKDPNNDFRKNLKVTAVPTLLKYGTP 102
>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola
insolens} SCOP: c.47.1.2 PDB: 2kp1_A
Length = 121
Score = 40.8 bits (96), Expect = 3e-05
Identities = 21/88 (23%), Positives = 32/88 (36%), Gaps = 13/88 (14%)
Query: 65 DDFKQTIRGRN-PVLAYFFKPSCGFCKQLEP------KISTVSETTSGVEFVKINV-ENG 116
++ + + VL F+ P CG CK L P + SE V K++ N
Sbjct: 15 KNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATAN- 73
Query: 117 GGEIAREFEVQAVPTVIGFRNGDPVDMV 144
E+Q PT+ + G V
Sbjct: 74 ----DVPDEIQGFPTIKLYPAGAKGQPV 97
>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines
missing, unknown funct; 1.50A {Trypanosoma cruzi}
Length = 127
Score = 40.8 bits (96), Expect = 3e-05
Identities = 8/87 (9%), Positives = 20/87 (22%), Gaps = 8/87 (9%)
Query: 65 DDFKQTIRGRN-PVLAYFFKPSCGFCKQLEP------KISTVSETTSGVEFVKINVENGG 117
+ F + V ++ P + +I+
Sbjct: 23 ETFDSIVMDPEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAARIDG-EKY 81
Query: 118 GEIAREFEVQAVPTVIGFRNGDPVDMV 144
++ V PT+ + D +
Sbjct: 82 PDVIERMRVSGFPTMRYYTRIDKQEPF 108
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain,
endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Length = 210
Score = 41.8 bits (98), Expect = 4e-05
Identities = 16/97 (16%), Positives = 32/97 (32%), Gaps = 2/97 (2%)
Query: 65 DDFKQTIRGRNPVLAYFFKPSCGFCKQLEPK-ISTVSETTSGVEFVKINVENGGGEIARE 123
+F + F+ P C C L P E + +N + + R
Sbjct: 105 REFDAAVNSGELWFVNFYSPGCSHCHDLAPTWREFAKEVDGLLRIGAVNCGDDRM-LCRM 163
Query: 124 FEVQAVPTVIGFRNGDPVDMVVGNADQDVIQTLVSKL 160
V + P++ FR+G G+ ++ + +
Sbjct: 164 KGVNSYPSLFIFRSGMAAVKYNGDRSKESLVAFAMQH 200
>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein
structure initiative, TB structural genomics consortium,
TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP:
c.47.1.10 PDB: 3ios_A
Length = 136
Score = 40.3 bits (95), Expect = 5e-05
Identities = 24/116 (20%), Positives = 43/116 (37%), Gaps = 27/116 (23%)
Query: 72 RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENG--------------- 116
G+ P + +F+ P C C+ P + V+ + V FV + +
Sbjct: 24 LGK-PAVLWFWAPWCPTCQGEAPVVGQVAASHPEVTFVGVAGLDQVPAMQEFVNKYPVKT 82
Query: 117 -------GGEIAREFEVQAVPT--VIGFRNGDPVDMVVGNADQDVIQTLVSKLSQK 163
G + F V P + +G+ VD+V G QD + V+ L+ +
Sbjct: 83 FTQLADTDGSVWANFGVTQQPAYAFVD-PHGN-VDVVRGRMSQDELTRRVTALTSR 136
>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A
{Aeropyrum pernix}
Length = 243
Score = 41.0 bits (95), Expect = 9e-05
Identities = 28/172 (16%), Positives = 56/172 (32%), Gaps = 17/172 (9%)
Query: 17 SFHRSAAAHVTFHNSGGKLSARAALPPRAHLLNLIQAIQMAYLIIEKIDD-FKQTIRG-- 73
F V F + +P + L++ I ++D K+ ++
Sbjct: 81 EFKVERVPTVAFLGGEVRW---TGIPAGEEIRALVEVIMRLSEDESGLEDATKEALKSLK 137
Query: 74 RNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVE----NGGGEIAREFEVQAV 129
+ PSC +C + I E +IA ++ V +V
Sbjct: 138 GRVHIETIITPSCPYCPYAVLLAHMFAYEAWKQGNPVILSEAVEAYENPDIADKYGVMSV 197
Query: 130 PTVIGFRNGDPVDMVVGNAD-QDVIQTLVSKLSQKLATHYQVDLTTGTPDQV 180
P++ NG V VG +D + + S +L + + G +++
Sbjct: 198 PSI--AINGYLV--FVGVPYEEDFLDYVKSAAEGRLTV--KGPIRAGEAEEL 243
>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein
disulfide isomerase, endoplasmic R isomerase; 1.83A
{Homo sapiens}
Length = 151
Score = 39.7 bits (92), Expect = 2e-04
Identities = 15/99 (15%), Positives = 36/99 (36%), Gaps = 13/99 (13%)
Query: 76 PVLAYFFKPSCGFCKQLEPKISTVSET--TSGVEFVKINVENGGGEIAREFEVQAVPTVI 133
P++ C + + L+ + E + +F+ +N+ + + + Q VP ++
Sbjct: 46 PLMVIHHLEDCQYSQALKKVFAQNEEIQEMAQNKFIMLNLMHETTDKNLSPDGQYVPRIM 105
Query: 134 GFRNGDPVDMVVGNADQDVIQTLVSKLSQKLATHYQVDL 172
+ V + + S +L T+ DL
Sbjct: 106 FV-----------DPSLTVRADIAGRYSNRLYTYEPRDL 133
>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul
structural genomics, PSI-2, protein structure
initiative; 1.30A {Xylella fastidiosa}
Length = 133
Score = 39.1 bits (91), Expect = 2e-04
Identities = 18/89 (20%), Positives = 30/89 (33%), Gaps = 9/89 (10%)
Query: 67 FKQTIRGRNPVLAYFFKPSCGFCKQLEPKIST---VSETTSGVEFVKINVENG--GGEIA 121
R P L F C C+ L+ + + E VKI+V N E++
Sbjct: 22 LAAGKRTHKPTLLVFGANWCTDCRALDKSLRNQKNTALIAKHFEVVKIDVGNFDRNLELS 81
Query: 122 REF---EVQAVPTVIGF-RNGDPVDMVVG 146
+ + +P V+ +G G
Sbjct: 82 QAYGDPIQDGIPAVVVVNSDGKVRYTTKG 110
>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus
subtilis} SCOP: c.47.1.10 PDB: 2b5y_A
Length = 148
Score = 38.1 bits (89), Expect = 5e-04
Identities = 18/118 (15%), Positives = 41/118 (34%), Gaps = 31/118 (26%)
Query: 72 RGRNPVLAYFFKPSCGFCKQLEPKISTVSETT-SGVEFVKINV----------------- 113
+ P L +F+ SC CK+ P+++ + + V +++
Sbjct: 28 GEK-PTLIHFWSISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMPRSEDDLDPGKIKETAA 86
Query: 114 ENG---------GGEIAREFEVQAVPT--VIGFRNGDPVDMVVGNADQDVIQTLVSKL 160
E+ + FE + VP V + G G + +++ V+++
Sbjct: 87 EHDITQPIFVDSDHALTDAFENEYVPAYYVFD-KTGQLRHFQAGGSGMKMLEKRVNRV 143
>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET:
MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB:
1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A
3c73_A
Length = 151
Score = 37.6 bits (88), Expect = 7e-04
Identities = 22/114 (19%), Positives = 42/114 (36%), Gaps = 27/114 (23%)
Query: 72 RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTS--GVEFVKINVENG------------- 116
+G+ V F+ C CK+ P ++ + GVE V +NV
Sbjct: 25 KGK-GVFLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGV 83
Query: 117 --------GGEIAREFEVQAVPT--VIGFRNGDPVDMVVGNADQDVIQTLVSKL 160
++ ++V +PT +I G V +V G + +I ++ +
Sbjct: 84 NFPVVLDTDRQVLDAYDVSPLPTTFLIN-PEGKVVKVVTGTMTESMIHDYMNLI 136
>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD,
structural genomics, protein structure initiative; 1.80A
{Rhodopseudomonas palustris}
Length = 137
Score = 37.0 bits (85), Expect = 0.001
Identities = 7/71 (9%), Positives = 25/71 (35%), Gaps = 1/71 (1%)
Query: 106 VEFVKINVENGGGEIAREFEVQAVPTVIGFRNGDPVDMVVGNADQDVIQTLVSKLSQKLA 165
+ ++ E + F V P++ + + ++ D + + ++
Sbjct: 68 LVAAEVAAEAER-GLMARFGVAVCPSLAVVQPERTLGVIAKIQDWSSYLAQIGAMLAEVD 126
Query: 166 THYQVDLTTGT 176
+ +L +G+
Sbjct: 127 QPGEAELQSGS 137
>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB
struct genomics consortium, TBSGC, unknown function;
1.90A {Mycobacterium tuberculosis}
Length = 352
Score = 36.9 bits (85), Expect = 0.003
Identities = 21/119 (17%), Positives = 38/119 (31%), Gaps = 32/119 (26%)
Query: 72 RGRNPVLAYFFKPSCGFCKQLEPKISTVSET--TSGVEFVKINVENGG------------ 117
RG+ VL F+ SC C++ P + + SG+ + ++
Sbjct: 81 RGK-VVLIDFWAYSCINCQRAIPHVVGWYQAYKDSGLAVIGVHTPEYAFEKVPGNVAKGA 139
Query: 118 --------------GEIAREFEVQAVPT--VIGFRNGDPVDMVVGNADQDVIQTLVSKL 160
+ + P +I G + G D +V +TLV +L
Sbjct: 140 ANLGISYPIALDNNYATWTNYRNRYWPAEYLID-ATGTVRHIKFGEGDYNVTETLVRQL 197
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.1 bits (85), Expect = 0.003
Identities = 24/221 (10%), Positives = 62/221 (28%), Gaps = 81/221 (36%)
Query: 46 HLLNLIQAIQMAYLIIEKIDDFKQTIRGRNPVLAYFF----KPSCGF--------CKQLE 93
H++ A+ + + KQ ++ F + + F +Q
Sbjct: 53 HIIMSKDAVSGTLRLFWTLLS-KQ-----EEMVQKFVEEVLRINYKFLMSPIKTEQRQPS 106
Query: 94 PK----ISTVSETTSGVE-FVKINVE-----------------------NG-GG------ 118
I + + F K NV +G G
Sbjct: 107 MMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV 166
Query: 119 --EIAREFEVQAVPTVIGFRNGDPVD-MVVGNADQD-----VIQTLVSKLSQKLATHYQV 170
++ ++VQ + + + + N + ++Q L+ ++ + +
Sbjct: 167 ALDVCLSYKVQC-------KMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTS--RS 217
Query: 171 DLTTGTPDQV--------YLIVLLRYDQVYLI---VCSSGI 200
D ++ ++ L+ Y+ L+ V ++
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA 258
Score = 32.5 bits (73), Expect = 0.079
Identities = 35/197 (17%), Positives = 69/197 (35%), Gaps = 49/197 (24%)
Query: 1 MNITSKLSPETITEMFS--FHRSAAAHVTFHNSGGKLSARAALPPRAH-----LLNLIQA 53
+N+ + SPET+ EM ++ N + + + R H L L++
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQID------PNWTSRSDHSSNIKLRIHSIQAELRRLLK- 239
Query: 54 IQMAY---LIIEKIDDFKQTIRGRNP-VLAYF-FKPSCGFCKQLEPKIST----VSETTS 104
Y L++ + + +N F CK L ++T V++ S
Sbjct: 240 -SKPYENCLLV--LLNV------QNAKAWNAFNLS-----CKIL---LTTRFKQVTDFLS 282
Query: 105 GVEFVKINVENGGGEIAREFEVQAVPTVIGFRNGD-PVDMVVGNADQDVIQTLVSKLSQK 163
I++++ + + + + R D P +++ N + + +
Sbjct: 283 AATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP--RRLSIIAESIRDG 340
Query: 164 LAT-----HYQVD-LTT 174
LAT H D LTT
Sbjct: 341 LATWDNWKHVNCDKLTT 357
>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB;
reduced, thiol-disulfide exchange, oxidoreductase; 1.60A
{Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A
Length = 164
Score = 35.5 bits (82), Expect = 0.004
Identities = 18/126 (14%), Positives = 38/126 (30%), Gaps = 33/126 (26%)
Query: 72 RGRNPVLAYFFKPSCGFCKQLEPKISTVSET--TSGVEFVKINVENGG------------ 117
+ P L F+ C C + ++ S + +
Sbjct: 37 KD-KPTLIKFWASWCPLCLSELGQAEKWAQDAKFSSANLITVASPGFLHEKKDGEFQKWY 95
Query: 118 ---------------GEIAREFEVQAVPT--VIGFRNGDPVDMVVGNADQDVIQTLVSKL 160
G IA+ + P+ +IG ++GD +V G+ ++ L+
Sbjct: 96 AGLNYPKLPVVTDNGGTIAQNLNISVYPSWALIG-KDGDVQRIVKGSINEAQALALIRNP 154
Query: 161 SQKLAT 166
+ L +
Sbjct: 155 NADLGS 160
>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural
genomics, midwest CE structural genomics; HET: MSE;
2.20A {Corynebacterium glutamicum}
Length = 160
Score = 35.2 bits (81), Expect = 0.006
Identities = 16/127 (12%), Positives = 36/127 (28%), Gaps = 40/127 (31%)
Query: 72 RGRNPVLAYFFKPSCGFCKQLE-PKISTVSETTS--GVEFVKINVENGGGE--------- 119
RG+ V+ F+ C C P+ + V+ + ++ +
Sbjct: 29 RGK-VVVVEVFQMLCPGCVNHGVPQAQKIHRMIDESQVQVIGLHSVFEHHDVMTPEALKV 87
Query: 120 ------------------------IAREFEVQAVPT--VIGFRNGDPVDMVVGNADQDVI 153
+++ ++ P+ + R G + G D V+
Sbjct: 88 FIDEFGIKFPVAVDMPREGQRIPSTMKKYRLEGTPSIILAD-RKGRIRQVQFGQVDDFVL 146
Query: 154 QTLVSKL 160
L+ L
Sbjct: 147 GLLLGSL 153
>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2,
protein struct initiative; NMR {Neisseria meningitidis
serogroup B}
Length = 153
Score = 34.6 bits (80), Expect = 0.008
Identities = 20/118 (16%), Positives = 36/118 (30%), Gaps = 28/118 (23%)
Query: 72 RGRNPVLAYFFKPSCGFCKQLEPKISTVSET--TSGVEFVKINVENGG------------ 117
+G+ L F+ PSC C PKI + + + +
Sbjct: 27 QGK-VTLINFWFPSCPGCVSEMPKIIKTANDYKNKNFQVLAVAQPIDPIESVRQYVKDYG 85
Query: 118 ----------GEIAREFEVQAVPT--VIGFRNGDPVDMVVGNADQDVIQTLVSKLSQK 163
+ + F Q PT +IG + G+ + VG D + + +
Sbjct: 86 LPFTVMYDADKAVGQAFGTQVYPTSVLIG-KKGEILKTYVGEPDFGKLYQEIDTAWRN 142
>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like
fold, RESA-like fold, dithiol, STOA, redox-active
center; 2.50A {Bacillus subtilis}
Length = 145
Score = 34.2 bits (79), Expect = 0.008
Identities = 17/114 (14%), Positives = 41/114 (35%), Gaps = 30/114 (26%)
Query: 72 RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTS--GVEFVKINVENGG------------ 117
+G+ + +F+ C CK+ P+ + + V+ V +N+ N
Sbjct: 33 KGQ-KTILHFWTSWCPPCKKELPQFQSFYDAHPSDSVKLVTVNLVNSEQNQQVVEDFIKA 91
Query: 118 ------------GEIAREFEVQAVPT--VIGFRNGDPVDMVVGNADQDVIQTLV 157
GE+ +E+ + +PT ++ G+ +G + ++
Sbjct: 92 NKLTFPIVLDSKGELMKEYHIITIPTSFLLN-EKGEIEKTKIGPMTAEQLKEWT 144
>4evm_A Thioredoxin family protein; structural genomics, niaid, national
institute of allergy AN infectious diseases; 1.51A
{Streptococcus pneumoniae}
Length = 138
Score = 34.2 bits (79), Expect = 0.010
Identities = 11/46 (23%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Query: 118 GEIAREFEVQAVPT--VIGFRNGDPVDMVVGNADQDVIQTLVSKLS 161
G++ + V++ PT I + G V G ++D I + +L+
Sbjct: 94 GKLLETYGVRSYPTQAFID-KEGKLVKTHPGFMEKDAILQTLKELA 138
>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily
protein SPOA0173, silicibacter DSS, structural genomics,
PSI-2; 1.95A {Silicibacter pomeroyi}
Length = 158
Score = 33.6 bits (77), Expect = 0.018
Identities = 15/126 (11%), Positives = 35/126 (27%), Gaps = 39/126 (30%)
Query: 72 RGRNPVLAYFFKPSCGFCKQLE-PKISTVSETTS--GVEFVKINVENGGGE--------- 119
RG+ ++ F+ C C P V V + ++ E
Sbjct: 27 RGK-VIVIEAFQMLCPGCVMHGIPLAQKVRAAFPEDKVAVLGLHTVFEHHEAMTPISLKA 85
Query: 120 -----------------------IAREFEVQAVPT--VIGFRNGDPVDMVVGNADQDVIQ 154
++++ P+ +I + GD G+ + ++
Sbjct: 86 FLHEYRIKFPVGVDQPGDGAMPRTMAAYQMRGTPSLLLID-KAGDLRAHHFGDVSELLLG 144
Query: 155 TLVSKL 160
++ L
Sbjct: 145 AEIATL 150
>3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825
/ FA 1090), DSBC, structural genomics, unknown funct 2;
2.00A {Neisseria gonorrhoeae}
Length = 147
Score = 33.5 bits (76), Expect = 0.021
Identities = 21/134 (15%), Positives = 40/134 (29%), Gaps = 45/134 (33%)
Query: 77 VLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGG------------------ 118
+A F P C FCK+LE + +++ T + I +
Sbjct: 17 KVAVFSDPDCPFCKRLEHEFEKMTDVTVYSFMMPIAGLHPDAARKAQILWCQPDRAKAWT 76
Query: 119 -----------------------EIAREFEVQAVPTVIGFRNGDPVDMVVGNADQDVIQT 155
+ +F PT++ F NG G + ++
Sbjct: 77 DWMRKGKFPVGGSICDNPVAETTSLGEQFGFNGTPTLV-FPNG---RTQSGYSPMPQLEE 132
Query: 156 LVSKLSQKLATHYQ 169
++ K Q+ H+
Sbjct: 133 IIRKNQQEGHHHHH 146
>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase,
PSI-II, structural genomics, protein structure
initiative; 2.09A {Chlorobium tepidum tls}
Length = 152
Score = 33.0 bits (76), Expect = 0.024
Identities = 26/126 (20%), Positives = 46/126 (36%), Gaps = 30/126 (23%)
Query: 72 RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTS--GVEFVKINVENG------------- 116
G V F+ CG C+Q P ++ + G + V +N++
Sbjct: 27 TGS-VVYLDFWASWCGPCRQSFPWMNQMQAKYKAKGFQVVAVNLDAKTGDAMKFLAQVPA 85
Query: 117 --------GGEIAREFEVQAVPT--VIGFRNGDPVDMVVGNADQD---VIQTLVSKLSQK 163
G+ R + V+ +PT +I RNG + VG D + Q +++ L
Sbjct: 86 EFTVAFDPKGQTPRLYGVKGMPTSFLID-RNGKVLLQHVGFRPADKEALEQQILAALGGN 144
Query: 164 LATHYQ 169
H+
Sbjct: 145 EGHHHH 150
>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein
disulfide isomerase, protein folding, redox protein,
redox-active center; HET: MES; 1.90A {Escherichia coli}
SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A
2iyj_A
Length = 216
Score = 33.3 bits (75), Expect = 0.036
Identities = 10/79 (12%), Positives = 30/79 (37%)
Query: 47 LLNLIQAIQMAYLIIEKIDDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGV 106
+N+ + + L + + V+ F +CG+C +L +++ + V
Sbjct: 59 PVNVTNKMLLKQLNALEKEMIVYKAPQEKHVITVFTDITCGYCHKLHEQMADYNALGITV 118
Query: 107 EFVKINVENGGGEIAREFE 125
++ + + +E +
Sbjct: 119 RYLAFPRQGLDSDAEKEMK 137
>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase,
disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB:
3dvw_A 3a3t_A
Length = 193
Score = 32.5 bits (73), Expect = 0.060
Identities = 9/47 (19%), Positives = 17/47 (36%), Gaps = 1/47 (2%)
Query: 76 PVLAYFFKPSCGFCKQLEPKISTVSET-TSGVEFVKINVENGGGEIA 121
+ FF C C LEP +S +++ + +V +
Sbjct: 26 VEVLEFFGYFCPHCAHLEPVLSKHAKSFKDDMYLRTEHVVWQKEMLT 72
>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI,
structural genomics, protein initiative; 2.45A
{Geobacter metallireducens gs-15}
Length = 154
Score = 31.9 bits (73), Expect = 0.074
Identities = 24/127 (18%), Positives = 49/127 (38%), Gaps = 31/127 (24%)
Query: 72 RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTS--GVEFVKINVENGG------------ 117
+G+ V+ F+ C C++ P + ++ + + ++++ GG
Sbjct: 27 KGQ-VVIVNFWATWCPPCREEIPSMMRLNAAMAGKPFRMLCVSIDEGGKVAVEEFFRKTG 85
Query: 118 ----------GEIAREFEVQAVPT--VIGFRNGDPVDMVVGNADQD---VIQTLVSKLSQ 162
+ + + VP VI R+G + VVG + D VI L ++LS+
Sbjct: 86 FTLPVLLDADKRVGKLYGTTGVPETFVID-RHGVILKKVVGAMEWDHPEVIAFLNNELSK 144
Query: 163 KLATHYQ 169
H+
Sbjct: 145 AREGHHH 151
>1un2_A DSBA, thiol-disulfide interchange protein; disulfide
oxidoreductase, oxidoreductase, protein disulfide
isomerase, protein folding, thioredoxin; 2.4A
{Escherichia coli} SCOP: c.47.1.13
Length = 197
Score = 32.1 bits (72), Expect = 0.084
Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 4/48 (8%)
Query: 81 FFKPSCGFCKQLEPKISTVSETT----SGVEFVKINVENGGGEIAREF 124
FF C C Q E + GV+ K +V GG++ ++
Sbjct: 120 FFSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYHVNFMGGDLGKDL 167
>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural
genomics, PSI-2, protein STRU initiative; 2.70A
{Shigella flexneri 2A} PDB: 2hfd_A
Length = 140
Score = 30.8 bits (69), Expect = 0.15
Identities = 8/42 (19%), Positives = 14/42 (33%)
Query: 119 EIAREFEVQAVPTVIGFRNGDPVDMVVGNADQDVIQTLVSKL 160
I F P + F G+ ++ G + L+ L
Sbjct: 82 AIGDRFGAFRFPATLVFTGGNYRGVLNGIHPWAELINLMRGL 123
>1bed_A DSBA oxidoreductase; TCPG, protein disulfide isomerase, disulfide
oxidoreductase; 2.00A {Vibrio cholerae} SCOP: c.47.1.13
PDB: 2ijy_A
Length = 181
Score = 30.8 bits (69), Expect = 0.19
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 76 PVLAYFFKPSCGFCKQLEPKISTVSET-TSGVEFVKINVENGGGEIARE 123
PV++ FF C C EP I+ + + G +F K +V GG + +
Sbjct: 20 PVVSEFFSFYCPHCNTFEPIIAQLKQQLPEGAKFQKNHVSFMGGNMGQA 68
>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
c.47.1.24
Length = 153
Score = 30.6 bits (69), Expect = 0.20
Identities = 7/63 (11%), Positives = 19/63 (30%), Gaps = 5/63 (7%)
Query: 76 PVLAYFFKPSCGFCKQLEPKI---STVSETTSG-VEFVKINVENG-GGEIAREFEVQAVP 130
++ C+ L + V F ++ ++ G + +++ P
Sbjct: 44 WLMINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQVYHDSEEGQRYIQFYKLGDFP 103
Query: 131 TVI 133
V
Sbjct: 104 YVS 106
>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein
disulfide isomerase, protein folding, redox protein;
2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1
Length = 211
Score = 30.7 bits (68), Expect = 0.22
Identities = 11/79 (13%), Positives = 29/79 (36%)
Query: 47 LLNLIQAIQMAYLIIEKIDDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGV 106
+++ I + L K + + V+ F +C +C L ++ ++ V
Sbjct: 59 PVDVAGKILVDKLNSYKDEMIVYPAKNEKHVVTVFMDITCHYCHLLHQQLKEYNDLGITV 118
Query: 107 EFVKINVENGGGEIAREFE 125
++ + A++ E
Sbjct: 119 RYLAFPRAGMNNQTAKQME 137
>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA,
thioredoxin fold, redox- active center; 1.90A {Xylella
fastidiosa}
Length = 193
Score = 30.5 bits (68), Expect = 0.23
Identities = 8/43 (18%), Positives = 13/43 (30%), Gaps = 1/43 (2%)
Query: 76 PVLAYFFKPSCGFCKQLEPKISTVSETT-SGVEFVKINVENGG 117
+ F +C C + K+ V F + GG
Sbjct: 27 IEVVEIFGYTCPHCAHFDSKLQAWGARQAKDVRFTLVPAVFGG 69
>2in3_A Hypothetical protein; DSBA family, FRNE-like subfamily, disulfide
isomerase, struc genomics, PSI-2, protein structure
initiative; 1.85A {Nitrosomonas europaea}
Length = 216
Score = 30.3 bits (68), Expect = 0.28
Identities = 5/48 (10%), Positives = 17/48 (35%)
Query: 119 EIAREFEVQAVPTVIGFRNGDPVDMVVGNADQDVIQTLVSKLSQKLAT 166
+ ++ + P ++ D + G + ++ L+ Q+
Sbjct: 167 QRVAQWGISGFPALVVESGTDRYLITTGYRPIEALRQLLDTWLQQHGV 214
>3l9v_A Putative thiol-disulfide isomerase or thioredoxin;
thioredoxin-fold, SRGA, thiol-disulfide oxidoreductase,
ISOM oxidoreductase; HET: PE8 P4C P6G; 2.15A {Salmonella
enterica subsp}
Length = 189
Score = 30.0 bits (66), Expect = 0.40
Identities = 10/46 (21%), Positives = 13/46 (28%), Gaps = 4/46 (8%)
Query: 76 PVLAYFFKPSCGFCKQLEPKISTVSE----TTSGVEFVKINVENGG 117
P + FF C C + G VK +V G
Sbjct: 16 PAVVEFFSFYCPPCYAFSQTMGVDQAIRHVLPQGSRMVKYHVSLLG 61
>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond,
redox-active center, transcription regulator; HET: MSE
GOL; 1.50A {Pseudomonas aeruginosa PAO1}
Length = 192
Score = 29.8 bits (66), Expect = 0.41
Identities = 12/42 (28%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 76 PVLAYFFKPSCGFCKQLEPKISTVSET-TSGVEFVKINVENG 116
+ F C C EP I SE + V FV++ G
Sbjct: 27 IEVVELFWYGCPHCYAFEPTIVPWSEKLPADVHFVRLPALFG 68
>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation,
blood coagulation, oxidoreduc blood
coagulation,oxidoreductase; HET: U10; 3.60A
{Synechococcus SP}
Length = 291
Score = 30.0 bits (66), Expect = 0.42
Identities = 7/54 (12%), Positives = 14/54 (25%)
Query: 78 LAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPT 131
+ C C+ + + VE + E + + PT
Sbjct: 201 GTMYGAYWCPHCQDQKELFGAAFDQVPYVECSPNGPGTPQAQECTEAGITSYPT 254
>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold,
DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis
serogroup B} PDB: 3dvx_A
Length = 195
Score = 29.8 bits (66), Expect = 0.46
Identities = 7/47 (14%), Positives = 14/47 (29%), Gaps = 1/47 (2%)
Query: 76 PVLAYFFKPSCGFCKQLEPKISTVSET-TSGVEFVKINVENGGGEIA 121
+ FF C C +P + + + S +V +
Sbjct: 24 IEVLEFFGYFCVHCHHFDPLLLKLGKALPSDAYLRTEHVVWQPEMLG 70
>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure
initiative II(PSI II), NYSGXRC, structural genomics;
2.35A {Bordetella parapertussis}
Length = 195
Score = 29.6 bits (66), Expect = 0.48
Identities = 9/47 (19%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 76 PVLAYFFKPSCGFCKQLEPKISTVSETT-SGVEFVKINVENGGGEIA 121
+ FF +C C +EP + ++T V ++ + G
Sbjct: 27 IEVLEFFAYTCPHCAAIEPMVEDWAKTAPQDVVLKQVPIAFNAGMKP 73
>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG,
structural genomics, midwest center for structural
genomics; 1.75A {Corynebacterium glutamicum}
Length = 183
Score = 29.4 bits (66), Expect = 0.56
Identities = 16/113 (14%), Positives = 32/113 (28%), Gaps = 36/113 (31%)
Query: 86 CGFCKQLEPKISTVSE--------TTSGVEFVKINVENGGGEIAREF------------- 124
C C+ + + E T G + INV + +IA++F
Sbjct: 71 CAPCRSESDDLQIIHEELQAAGNGDTPGGTVLGINVRDYSRDIAQDFVTDNGLDYPSIYD 130
Query: 125 ------------EVQAVPT--VIGFRNGDPVDMVVGNADQDVIQTLVSKLSQK 163
+PT V+ + P + + + + L +
Sbjct: 131 PPFMTAASLGGVPASVIPTTIVLD-KQHRPAAVFLREVTSKDVLDVALPLVDE 182
>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide
formation, redox partner, oxidoreductase; 1.66A
{Synechococcus SP}
Length = 106
Score = 28.5 bits (63), Expect = 0.65
Identities = 7/52 (13%), Positives = 14/52 (26%)
Query: 80 YFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPT 131
+ C C+ + + VE + E + + PT
Sbjct: 18 MYGAYWCPHCQDQKELFGAAFDQVPYVECSPNGPGTPQAQECTEAGITSYPT 69
>3c7m_A Thiol:disulfide interchange protein DSBA-like; redox protein,
periplasm, redox-active center, oxidoreductase; HET:
PGE; 1.55A {Escherichia coli} PDB: 3l9u_A
Length = 195
Score = 29.1 bits (64), Expect = 0.67
Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 2/56 (3%)
Query: 76 PVLAYFFKPSCGFCKQLEPKISTVSETT--SGVEFVKINVENGGGEIAREFEVQAV 129
L F +C FC + + ++ V F ++E G + EV AV
Sbjct: 19 KTLIKVFSYACPFCYKYDKAVTGPVSEKVKDIVAFTPFHLETKGEYGKQASEVFAV 74
>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3
component; oxidoreductase, homodimer, structural
genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus}
PDB: 2eq8_A* 2eq9_A*
Length = 464
Score = 29.4 bits (67), Expect = 0.88
Identities = 11/59 (18%), Positives = 20/59 (33%), Gaps = 4/59 (6%)
Query: 83 KPSCGFCKQLEPKISTVSETTSGVEFV----KINVENGGGEIAREFEVQAVPTVIGFRN 137
KP K + V + T GV + + + G + EV+ G ++
Sbjct: 76 KPELDLKKLGGWRDQVVKKLTGGVGTLLKGNGVELLRGFARLVGPKEVEVGGERYGAKS 134
>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura
genomics, PSI, protein structure initiative; 1.50A
{Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A
Length = 167
Score = 28.4 bits (63), Expect = 1.2
Identities = 13/80 (16%), Positives = 27/80 (33%), Gaps = 5/80 (6%)
Query: 57 AYLIIEKIDDFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENG 116
+ + + + Q I R +L + C C+ + +E I+
Sbjct: 38 SNGLPSALTERLQRIERRYRLLV-AGEMWCPDCQINLAALDFAQRLQPNIELAIISKG-R 95
Query: 117 GGEIAREF---EVQAVPTVI 133
+ R+ E A+P V+
Sbjct: 96 AEDDLRQRLALERIAIPLVL 115
>1kte_A Thioltransferase; redox-active center, electron transport,
acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB:
1jhb_A 1b4q_A*
Length = 105
Score = 27.5 bits (62), Expect = 1.2
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 81 FFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEI 120
F KP+C FC++ + +S + +EFV I + EI
Sbjct: 17 FIKPTCPFCRKTQELLSQLPFKEGLLEFVDITATSDTNEI 56
>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP:
c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A
Length = 85
Score = 27.2 bits (61), Expect = 1.3
Identities = 6/42 (14%), Positives = 14/42 (33%), Gaps = 6/42 (14%)
Query: 83 KPSCGFC---KQLEPKISTVSETTSGVEFVKINVENGGGEIA 121
+ C +C K L +S ++ +++ G
Sbjct: 8 RSGCPYCVRAKDL---AEKLSNERDDFQYQYVDIRAEGITKE 46
>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox
protein, protein disulfide isomerase, thioredoxin fold;
1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB:
1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A
Length = 241
Score = 28.5 bits (63), Expect = 1.4
Identities = 8/52 (15%), Positives = 20/52 (38%), Gaps = 5/52 (9%)
Query: 119 EIAREFEVQAVPTVIGFRNGD-PVDMVVGNADQDVIQTLVSKLSQKLATHYQ 169
++ + P + + + + + VG DQ + + + KL H+
Sbjct: 190 KLMDDLGANVTPAIY-YMSKENTLQQAVGLPDQKTLNII---MGNKLQHHHH 237
Score = 28.1 bits (62), Expect = 1.6
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 77 VLAYFFKPSCGFCKQLEPKI 96
++ F P C +CKQ +
Sbjct: 100 IVYVFADPFCPYCKQFWQQA 119
>3kzq_A Putative uncharacterized protein VP2116; protein with unknown
function, STRU genomics, PSI, MCSG, protein structure
initiative; HET: PG6; 2.10A {Vibrio parahaemolyticus}
Length = 208
Score = 28.4 bits (63), Expect = 1.4
Identities = 5/48 (10%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 119 EIAREFEVQAVPTVIGFRNGDPVDMVVGNAD-QDVIQTLVSKLSQKLA 165
+A+ V + P+++ N + V + ++ + ++ + ++
Sbjct: 160 SLAKSLGVNSYPSLVLQINDAYFPIEVDYLSTEPTLKLIRERIIENMS 207
>1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Length = 100
Score = 27.4 bits (61), Expect = 1.5
Identities = 16/88 (18%), Positives = 31/88 (35%), Gaps = 7/88 (7%)
Query: 76 PVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVPTVIGF 135
PVL F K C C + + + + ++ V I + ++ +P
Sbjct: 17 PVLTLFTKAPCPLCDEAKEVLQPYKDRF-ILQEVDITLP-ENSTWYERYKFD-IPVF--H 71
Query: 136 RNGDPVDMVVGNADQDVIQTLVSKLSQK 163
NG + M + ++ + KLS
Sbjct: 72 LNGQFLMM--HRVNTSKLEKQLRKLSGP 97
>3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure
initiativ midwest center for structural genomics,
rossmann fold; 1.10A {Methanosarcina mazei}
Length = 103
Score = 27.4 bits (61), Expect = 1.6
Identities = 15/63 (23%), Positives = 23/63 (36%), Gaps = 21/63 (33%)
Query: 83 KPSCGFCK----QLEPKISTVSETTSGVEFVKINVENGGGEIAREF--EVQ------AVP 130
+C +CK L GV+F + V+ G+ E EV+ + P
Sbjct: 29 LSTCVWCKKTKKLLTDL---------GVDFDYVYVDRLEGKEEEEAVEEVRRFNPSVSFP 79
Query: 131 TVI 133
T I
Sbjct: 80 TTI 82
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate
hydrogen bond, nucleotide binding fold, thior reductase,
thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium}
SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A
1zyp_A
Length = 521
Score = 28.4 bits (64), Expect = 1.7
Identities = 22/107 (20%), Positives = 37/107 (34%), Gaps = 15/107 (14%)
Query: 81 FFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGG---EIAREFEVQAVPTVIGFRN 137
++ SC C + ++ ++ ++ I+ GG E V VP V F N
Sbjct: 124 YYSLSCHNCPDVVQALNLMAVLNPRIKHTAID----GGTFQNEITERNVMGVPAV--FVN 177
Query: 138 GDPVDMVVGNADQDVIQTLVSKLSQKLATHYQVDLTTGTPDQVYLIV 184
G G + + +V+K+ L V LIV
Sbjct: 178 GKE----FGQGRMTLTE-IVAKVDTGAEKRAAEALNKRDAYDV-LIV 218
>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi
DSS-3, thioredoxin-like, oxidoreductase, structural
genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}
Length = 175
Score = 27.7 bits (62), Expect = 1.8
Identities = 6/33 (18%), Positives = 15/33 (45%)
Query: 77 VLAYFFKPSCGFCKQLEPKISTVSETTSGVEFV 109
+ FF +C +C++ ++ + + V V
Sbjct: 25 TVVEFFDYNCPYCRRAMAEVQGLVDADPNVRLV 57
>3tdg_A DSBG, putative uncharacterized protein; thioredoxin fold,
reductase, oxidoreductase; HET: P6G; 2.10A {Helicobacter
pylori}
Length = 273
Score = 28.1 bits (61), Expect = 2.2
Identities = 11/53 (20%), Positives = 17/53 (32%), Gaps = 6/53 (11%)
Query: 45 AHLLNLIQAIQMAYLIIEKIDDFKQTIRGRNPVLAYFFK-PSCGFCKQLEPKI 96
A L + I Y I + T + Y P C C++ K+
Sbjct: 122 AKLNAIFNEIPADYAI-----ELPSTNAANKDKILYIVSDPMCPHCQKELTKL 169
>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase
subunit OST6; oxidoreductase, active site loop, redox
state, membrane; HET: PG4; 1.30A {Saccharomyces
cerevisiae} PDB: 3g7y_A 3g9b_A*
Length = 178
Score = 27.3 bits (60), Expect = 2.4
Identities = 11/57 (19%), Positives = 24/57 (42%), Gaps = 7/57 (12%)
Query: 85 SCGFCKQLEPKISTVSET------TSGVEFVKINVENGGGEIAREFEVQAVPTVIGF 135
SC C E V++ S F ++V ++ ++ ++Q VP ++ +
Sbjct: 55 SCQLCHDFEKTYHAVADVIRSQAPQSLNLFFTVDVNE-VPQLVKDLKLQNVPHLVVY 110
>3l4n_A Monothiol glutaredoxin-6; C-terminal domain of GRX6,
oxidoreductase; HET: GSH; 1.50A {Saccharomyces
cerevisiae}
Length = 127
Score = 27.0 bits (60), Expect = 2.6
Identities = 8/60 (13%), Positives = 23/60 (38%), Gaps = 1/60 (1%)
Query: 66 DFKQTIRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFE 125
I +P++ F K +C + K ++ + + ++++ G E+ +
Sbjct: 5 KEYSLILDLSPIII-FSKSTCSYSKGMKELLENEYQFIPNYYIIELDKHGHGEELQEYIK 63
>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural
genomics, protein S initiative, midwest center for
structural genomics; HET: MSE; 1.30A {Bacteroides
fragilis}
Length = 142
Score = 26.6 bits (59), Expect = 3.7
Identities = 8/91 (8%), Positives = 23/91 (25%), Gaps = 29/91 (31%)
Query: 71 IRGRNPVLAYFFKPSCGFCKQLEPKISTVSETTS-----GVEFVKINVEN---------- 115
L + P C C ++ + ++ + I +
Sbjct: 29 FPA-EYTLLFINNPGCHACAEMIEGLKASPVINGFTAAKKLKVLSIYPDEELDEWKKHRN 87
Query: 116 -------------GGGEIAREFEVQAVPTVI 133
+ ++++A+PT+
Sbjct: 88 DFAKEWTNGYDKELVIKNKNLYDLRAIPTLY 118
>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A
{Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 458
Score = 27.1 bits (61), Expect = 3.9
Identities = 10/59 (16%), Positives = 21/59 (35%), Gaps = 4/59 (6%)
Query: 83 KPSCGFCKQLEPKISTVSETTSGVEFV----KINVENGGGEIAREFEVQAVPTVIGFRN 137
P + + K V T+GV + + V +G ++ +V+ I +
Sbjct: 79 SPRLDIGQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAKVLDGKQVEVDGQRIQCEH 137
>3l9s_A Thiol:disulfide interchange protein; thioredoxin-fold, DSBA,
thiol-disulfide oxidoreductase, DISU bond, redox-active
center; 1.58A {Salmonella enterica subsp} PDB: 1a23_A
1a24_A 1a2j_A 1a2l_A 1a2m_A 1dsb_A 1fvk_A 3dks_A 1bq7_A
1fvj_A 1acv_A 1u3a_A* 1ti1_A* 2hi7_A* 2leg_A* 2zup_A*
3e9j_B* 1ac1_A 2b6m_A 2b3s_A
Length = 191
Score = 26.8 bits (58), Expect = 4.0
Identities = 7/26 (26%), Positives = 9/26 (34%)
Query: 76 PVLAYFFKPSCGFCKQLEPKISTVSE 101
P + FF C C Q E +
Sbjct: 23 PQVLEFFSFYCPHCYQFEEVLHVSDN 48
>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET:
GSH; 2.10A {Populus tremula x populus tremuloides} PDB:
1z7p_A 1z7r_A
Length = 116
Score = 26.1 bits (58), Expect = 4.2
Identities = 12/74 (16%), Positives = 27/74 (36%), Gaps = 16/74 (21%)
Query: 56 MAYLIIEKIDDFKQTIRGRNPVLAYFFKPSCGFCKQ----LEPKISTVSETTSGVEF--V 109
M+ ++ + + PV+ F K CG+C + L G + V
Sbjct: 1 MSKQELDAALKKAKELASSAPVVV-FSKTYCGYCNRVKQLLTQV---------GASYKVV 50
Query: 110 KINVENGGGEIARE 123
+++ + G ++
Sbjct: 51 ELDELSDGSQLQSA 64
>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin,
redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1
Length = 81
Score = 25.3 bits (56), Expect = 4.6
Identities = 15/67 (22%), Positives = 22/67 (32%), Gaps = 22/67 (32%)
Query: 83 KPSCGFCKQ----LEPKISTVSETTSGVEFVKINVENGGGEIA--REFEVQAVPTVI--- 133
+ C C +E + G +F INV+ R + +P VI
Sbjct: 8 RNDCVQCHATKRAMENR---------GFDFEMINVDRVPEAAEALRAQGFRQLPVVIAGD 58
Query: 134 ----GFR 136
GFR
Sbjct: 59 LSWSGFR 65
>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A
{Synechocystis SP}
Length = 99
Score = 25.7 bits (57), Expect = 5.1
Identities = 9/43 (20%), Positives = 15/43 (34%), Gaps = 13/43 (30%)
Query: 83 KPSCGFCKQ----LEPKISTVSETTSGVEFVKINVENGGGEIA 121
+C FC + L+ K GVEF + ++
Sbjct: 23 WSTCPFCMRALALLKRK---------GVEFQEYCIDGDNEARE 56
>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein
structure initiative, midwest center for structural
genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus}
Length = 92
Score = 25.3 bits (56), Expect = 5.5
Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 13/41 (31%)
Query: 83 KPSCGFCKQ----LEPKISTVSETTSGVEFVKINVENGGGE 119
+C CK+ L+ + GV+F I ++ GE
Sbjct: 19 LSTCPHCKRTLEFLKRE---------GVDFEVIWIDKLEGE 50
>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G
midwest center for structural genomics, protein
structure initiative; 1.70A {Aeropyrum pernix}
Length = 165
Score = 26.3 bits (58), Expect = 6.3
Identities = 9/59 (15%), Positives = 18/59 (30%), Gaps = 1/59 (1%)
Query: 72 RGRNPVLAYFFKPSCGFCKQLEPKISTVSETTSGVEFVKINVENGGGEIAREFEVQAVP 130
G V+ +F C C + + ++E + + I+ A P
Sbjct: 36 GGD-VVILWFMAAWCPSCVYMADLLDRLTEKYREISVIAIDFWTAEALKALGLNKPGYP 93
>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain
swapping, electron transport; 2.69A {Corynebacterium
ammoniagenes} SCOP: c.47.1.1
Length = 75
Score = 24.9 bits (55), Expect = 7.4
Identities = 11/67 (16%), Positives = 19/67 (28%), Gaps = 22/67 (32%)
Query: 83 KPSCGFCKQ----LEPKISTVSETTSGVEFVKINVENGGG--EIAREFEVQAVPTVI--- 133
KP+C C L+ G+ + +++ + P V
Sbjct: 8 KPACVQCTATKKALDRA---------GLAYNTVDISLDDEARDYVMALGYVQAPVVEVDG 58
Query: 134 ----GFR 136
GFR
Sbjct: 59 EHWSGFR 65
>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold,
structural genomics, PSI-2, protein structu initiative;
2.00A {Bacteroides fragilis}
Length = 142
Score = 25.8 bits (57), Expect = 7.5
Identities = 10/91 (10%), Positives = 28/91 (30%), Gaps = 29/91 (31%)
Query: 71 IRGRNPVLAYFFKPSCGFCKQLEPKISTVSET-----TSGVEFVKINVEN---------- 115
++ + +F+ P C C++ E + + + + I +
Sbjct: 25 LKA-QYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVENGTLRVLAIYPDENREEWATKAV 83
Query: 116 -------------GGGEIAREFEVQAVPTVI 133
G + ++++A PT+
Sbjct: 84 YMPQGWIVGWNKAGDIRTRQLYDIRATPTIY 114
>3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase,
rossmann fold, LEFT-handed-beta-helix, cell shape; HET:
COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB:
3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A*
Length = 501
Score = 26.4 bits (59), Expect = 8.4
Identities = 9/36 (25%), Positives = 17/36 (47%), Gaps = 6/36 (16%)
Query: 7 LSPETITEMFSFHRSAAAHVTFHNSGGKLSARAALP 42
L +T+ ++ + HR+ +A VT L+ P
Sbjct: 124 LDADTLADLIATHRAVSAAVTV------LTTTLDDP 153
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.136 0.389
Gapped
Lambda K H
0.267 0.0750 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,066,031
Number of extensions: 180732
Number of successful extensions: 672
Number of sequences better than 10.0: 1
Number of HSP's gapped: 567
Number of HSP's successfully gapped: 180
Length of query: 201
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 112
Effective length of database: 4,216,824
Effective search space: 472284288
Effective search space used: 472284288
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (24.9 bits)