BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5683
(264 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3QDF|A Chain A, Crystal Structure Of 2-Hydroxyhepta-2,4-Diene-1,7-Dioate
Isomerase From Mycobacterium Marinum
Length = 268
Score = 141 bits (355), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 86/204 (42%), Positives = 118/204 (57%), Gaps = 24/204 (11%)
Query: 70 LSEVELLPPITRPDKILCIALNYKDHCDE---QNKTYPETPFFFNKFPSTIVGPFSEVTC 126
L++V LL PI K++C+ NY DH E Q P P F K + IVGP +
Sbjct: 53 LADVRLLAPILA-SKVVCVGKNYTDHIAEMGGQTGPTPADPVIFLKPNTAIVGPNVPIRL 111
Query: 127 PTNVTRYLDWEVELAVIIGKKTRDVKPHEAMESVF---------ESDWQKSSRNGGQWLF 177
P N + + +E ELA++IG+ +DV +A++++ D QKS GQW
Sbjct: 112 PANASP-VHFEGELAIVIGRPCKDVSAAQAVDNILGYTIGNDVSARDQQKSD---GQWTR 167
Query: 178 AKSLDTFCPLGPSVVMKEYLNDPHDVTLTCKVNGQVKQNASSSNMLHKIPEIVSYLSEMI 237
AK DTFCP+GP +V DP D+ L +VNG VKQ+A +S M+H + IV ++S ++
Sbjct: 168 AKGHDTFCPVGPWIVTDV---DPADLELRTEVNGAVKQHARTSLMIHDVGAIVEWISAVM 224
Query: 238 TLLPGDVILTGTPAGVGVFRKPIE 261
TLLPGD+ILTGTPAGVG PIE
Sbjct: 225 TLLPGDLILTGTPAGVG----PIE 244
>pdb|3RR6|A Chain A, Structure Of A Putative Uncharacterized Protein From
Mycobacterium Abscessus Atcc 19977 DSM 44196
Length = 265
Score = 136 bits (343), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 77/191 (40%), Positives = 110/191 (57%), Gaps = 11/191 (5%)
Query: 70 LSEVELLPPITRPDKILCIALNYKDHCDEQNKTYPETPFFFNKFPSTIVGPFSEVTCPTN 129
L++V LL PI K++ + NY H E PE+P F K ++I+GP + P +
Sbjct: 53 LADVRLLAPILA-SKVVAMGKNYAAHAAEMGGDPPESPVIFIKPNTSIIGPGLPIQLPPS 111
Query: 130 VTRYLDWEVELAVIIGKKTRDVKPHEAMESVF------ESDWQKSSRNGGQWLFAKSLDT 183
T + E ELA++IG+ +DV A E++ + + R GQW AK DT
Sbjct: 112 ATE-VHHEGELAIVIGRPCKDVPAARAAENILGYTIGNDVSARDHQRADGQWTRAKGHDT 170
Query: 184 FCPLGPSVVMKEYLNDPHDVTLTCKVNGQVKQNASSSNMLHKIPEIVSYLSEMITLLPGD 243
FCPLGP +V DP D+ + +VNGQV+Q + +S +LH + IV ++S ++TLLPGD
Sbjct: 171 FCPLGPWIVTDL---DPADLEIRTEVNGQVRQRSRTSLLLHDVGAIVEWVSAVMTLLPGD 227
Query: 244 VILTGTPAGVG 254
VILTGTP GVG
Sbjct: 228 VILTGTPEGVG 238
>pdb|1WZO|A Chain A, Crystal Structure Of The Hpce From Thermus Thermophilus
Hb8
pdb|1WZO|B Chain B, Crystal Structure Of The Hpce From Thermus Thermophilus
Hb8
pdb|1WZO|C Chain C, Crystal Structure Of The Hpce From Thermus Thermophilus
Hb8
pdb|1WZO|D Chain D, Crystal Structure Of The Hpce From Thermus Thermophilus
Hb8
Length = 246
Score = 124 bits (312), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 75/205 (36%), Positives = 115/205 (56%), Gaps = 10/205 (4%)
Query: 60 MVSECKCMVKLSEVELLPPITRPDKILCIALNYKDHCDEQNKTYPETPFFFNKFPSTIVG 119
++ E + +V L P T P KIL +ALNY DH +E + PE P F K P+T +
Sbjct: 22 LLDEAGEAHRPEDVTWLLPFT-PGKILGVALNYADHAEELGLSRPEEPALFWK-PNTSLL 79
Query: 120 PFSEVTCPTNVTRYLDWEVELAVIIGKKTRDVKPHEAMESVFESDWQKS--SRNGGQWLF 177
P V R++ +EVELAV++G+ + V+ +A++ V +R+ F
Sbjct: 80 PHKGVVLYPKGARFVHYEVELAVVVGRPMKRVRAKDALDYVLGYTIANDLVARDYVTNTF 139
Query: 178 -----AKSLDTFCPLGPSVVMKEYLNDPHDVTLTCKVNGQVKQNASSSNMLHKIPEIVSY 232
AK DTF PLGP +V++E + DP D+ L VNG+++Q +S ML+ + E++ +
Sbjct: 140 RPPIRAKGRDTFLPLGPFLVVEE-VEDPQDLWLRAYVNGELRQEGHTSRMLYSVAELLEF 198
Query: 233 LSEMITLLPGDVILTGTPAGVGVFR 257
+SE +TL P DV+LTGTP G+ R
Sbjct: 199 ISEFMTLEPYDVLLTGTPKGISQVR 223
>pdb|2DFU|A Chain A, Crystal Structure Of The
2-Hydroxyhepta-2,4-Diene-1,7-Dioate Isomerase From
Thermus Thermophilus Hb8
pdb|2DFU|B Chain B, Crystal Structure Of The
2-Hydroxyhepta-2,4-Diene-1,7-Dioate Isomerase From
Thermus Thermophilus Hb8
pdb|2DFU|C Chain C, Crystal Structure Of The
2-Hydroxyhepta-2,4-Diene-1,7-Dioate Isomerase From
Thermus Thermophilus Hb8
pdb|2DFU|D Chain D, Crystal Structure Of The
2-Hydroxyhepta-2,4-Diene-1,7-Dioate Isomerase From
Thermus Thermophilus Hb8
Length = 264
Score = 117 bits (293), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 77/209 (36%), Positives = 107/209 (51%), Gaps = 28/209 (13%)
Query: 70 LSEVELLPPITRPDKILCIALNYKDHCDEQNKTY----PETPFFFNKFPSTIVGP----- 120
L+ V LLPP T P KI+C+ NY++H E + P+ P F K P+ + P
Sbjct: 36 LASVTLLPPAT-PTKIVCVGRNYREHIREMGHDFGEDLPKEPGLFLKGPNALARPGNPRD 94
Query: 121 ---FSEVTCPTNVTRYLDWEVELAVIIGKKTRDVKPHEAMESVF---------ESDWQKS 168
+E T L +E ELAV++G + R V P +A++ V D QK
Sbjct: 95 PWGTAEPVPYPFFTEELHYEGELAVVVGDRMRHVPPEKALDHVLGYTVAVDITARDVQKK 154
Query: 169 SRNGGQWLFAKSLDTFCPLGPSVVMKEYLNDPHDVTLTCKVNGQVKQNASSSNMLHKIPE 228
QW+ AKS D F PLGP + E +P D + VNG ++Q +S M+ + E
Sbjct: 155 DL---QWVRAKSADKFLPLGPWL---ETDLNPQDTWVRTYVNGTLRQEGHTSQMIFSVAE 208
Query: 229 IVSYLSEMITLLPGDVILTGTPAGVGVFR 257
I+SY+S +TL P DV+LTGTP GVG R
Sbjct: 209 ILSYISTFMTLEPLDVVLTGTPEGVGALR 237
>pdb|1I7O|A Chain A, Crystal Structure Of Hpce
pdb|1I7O|B Chain B, Crystal Structure Of Hpce
pdb|1I7O|C Chain C, Crystal Structure Of Hpce
pdb|1I7O|D Chain D, Crystal Structure Of Hpce
pdb|1GTT|A Chain A, Crystal Structure Of Hpce
pdb|1GTT|B Chain B, Crystal Structure Of Hpce
pdb|1GTT|C Chain C, Crystal Structure Of Hpce
pdb|1GTT|D Chain D, Crystal Structure Of Hpce
Length = 429
Score = 116 bits (291), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 63/176 (35%), Positives = 100/176 (56%), Gaps = 8/176 (4%)
Query: 85 ILCIALNYKDHCDEQNKTYPETPFFFNKFPSTIVGPFSEVTCPTNVTRYLDWEVELAVII 144
+ + LNY DH E PE P F K P+T+ G P N+ Y+ +E EL V+I
Sbjct: 225 LFALGLNYADHASELEFKPPEEPLVFLKAPNTLTGDNQTSVRPNNI-EYMHYEAELVVVI 283
Query: 145 GKKTRDVKPHEAMESVFE----SDWQKSSRNGGQW---LFAKSLDTFCPLGPSVVMKEYL 197
GK+ R+V +AM+ V +D+ + L KS D P+ ++V KE +
Sbjct: 284 GKQARNVSEADAMDYVAGYTVCNDYAIRDYLENYYRPNLRVKSRDGLTPMLSTIVPKEAI 343
Query: 198 NDPHDVTLTCKVNGQVKQNASSSNMLHKIPEIVSYLSEMITLLPGDVILTGTPAGV 253
DPH++TL VNG+++Q ++++++ +P +++YLSE +TL PGD+I TGTP G+
Sbjct: 344 PDPHNLTLRTFVNGELRQQGTTADLIFSVPFLIAYLSEFMTLNPGDMIATGTPKGL 399
Score = 61.2 bits (147), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 86/179 (48%), Gaps = 19/179 (10%)
Query: 85 ILCIALNYKDHCDEQNKTYPETPF--------FFNKFPSTIVGPFSEVTCPTNVTRYLDW 136
I +ALN++ D + + ++P+ +F K +T++G + P + L
Sbjct: 5 IFAVALNHRSQLDAWQEAFQQSPYKAPPKTAVWFIKPRNTVIGCGEPIPFPQG-EKVLSG 63
Query: 137 EVELAVIIGKKTRDVKPHEAMESVFESDWQKSSRNGGQWLF-----AKSLDTFCPLGPSV 191
+A+I+GK V+ +A E + + + AK D FCP+G +V
Sbjct: 64 AT-VALIVGKTATKVREEDAAEYIAGYALANDVSLPEESFYRPAIKAKCRDGFCPIGETV 122
Query: 192 VMKEYLNDPHDVTLTCKVNGQVKQNASSSNMLHKIPEIVSYLSEMITLLPGDVILTGTP 250
L++ ++T+ ++NG+ + +++++ +++S LSE TL PGD IL GTP
Sbjct: 123 A----LSNVDNLTIYTEINGRPADHWNTADLQRNAAQLLSALSEFATLNPGDAILLGTP 177
>pdb|1SAW|A Chain A, X-Ray Structure Of Homo Sapiens Protein Flj36880
pdb|1SAW|B Chain B, X-Ray Structure Of Homo Sapiens Protein Flj36880
Length = 225
Score = 115 bits (289), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 71/180 (39%), Positives = 94/180 (52%), Gaps = 12/180 (6%)
Query: 85 ILCIALNYKDHCDEQNKTYPETPFFFNKFPSTIVGPFSEVTCPTNVTRYLDWEVELAVII 144
I+C+ NY DH E P F K PST P TR L E+EL V++
Sbjct: 21 IVCVGRNYADHVREMRSAVLSEPVLFLK-PSTAYAPEGSPILMPAYTRNLHHELELGVVM 79
Query: 145 GKKTRDVKPHEAMESV---------FESDWQKSSRNGG-QWLFAKSLDTFCPLGPSVVMK 194
GK+ R V AM+ V D Q + G W AKS CP+ + V K
Sbjct: 80 GKRCRAVPEAAAMDYVGGYALCLDMTARDVQDECKKKGLPWTLAKSFTASCPVS-AFVPK 138
Query: 195 EYLNDPHDVTLTCKVNGQVKQNASSSNMLHKIPEIVSYLSEMITLLPGDVILTGTPAGVG 254
E + DPH + L KVNG+++Q +S+M+ IP I+SY+S++ITL GD+ILTGTP GVG
Sbjct: 139 EKIPDPHKLKLWLKVNGELRQEGETSSMIFSIPYIISYVSKIITLEEGDIILTGTPKGVG 198
>pdb|4DBF|A Chain A, Crystal Structures Of Cg1458
pdb|4DBF|B Chain B, Crystal Structures Of Cg1458
pdb|4DBH|A Chain A, Crystal Structure Of Cg1458 With Inhibitor
pdb|4DBH|B Chain B, Crystal Structure Of Cg1458 With Inhibitor
Length = 288
Score = 112 bits (280), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 75/195 (38%), Positives = 110/195 (56%), Gaps = 14/195 (7%)
Query: 70 LSEVELLPPITRPDKILCIALNYKDHCDEQNKTYPET--PFFFNKFPSTIVGPFSEVTCP 127
L +V LL P+ P K++ I NY DH E K E+ P F K P+ + GP S + P
Sbjct: 69 LKDVRLLAPML-PSKVVAIGRNYADHVAEVFKKSAESLPPTLFLKPPTAVTGPESPIRIP 127
Query: 128 TNVTRYLDWEVELAVIIGKKTRDVKPHEAMESV--FESDWQKSSRN----GGQWLFAKSL 181
+ T+ +++E ELAV+IGK ++VK + V F SSR+ GQW AK +
Sbjct: 128 SFATK-VEFEGELAVVIGKPCKNVKADDWKSVVLGFTIINDVSSRDLQFADGQWARAKGI 186
Query: 182 DTFCPLGPSVVMK----EYLNDPHDVTLTCKVNGQVKQNASSSNMLHKIPEIVSYLSEMI 237
DTF P+GP + + N P LT Q+KQ+++S+ M+ K+ EI+ +++ +
Sbjct: 187 DTFGPIGPWIETDINSIDLDNLPIKARLTHDGETQLKQDSNSNQMIMKMGEIIEFITASM 246
Query: 238 TLLPGDVILTGTPAG 252
TLLPGDVI TG+PAG
Sbjct: 247 TLLPGDVIATGSPAG 261
>pdb|1NR9|A Chain A, Crystal Structure Of Escherichia Coli 1262 (Apc5008),
Putative Isomerase
pdb|1NR9|B Chain B, Crystal Structure Of Escherichia Coli 1262 (Apc5008),
Putative Isomerase
pdb|1NR9|C Chain C, Crystal Structure Of Escherichia Coli 1262 (Apc5008),
Putative Isomerase
pdb|1NR9|D Chain D, Crystal Structure Of Escherichia Coli 1262 (Apc5008),
Putative Isomerase
Length = 223
Score = 106 bits (264), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 90/181 (49%), Gaps = 11/181 (6%)
Query: 84 KILCIALNYKDHCDEQNKTYPETPFFFNKFPSTIVGPFSEVTCPTNVTRYLDWEVELAVI 143
K++C+ NY H E PE P F K + + + P++ + EVELAV+
Sbjct: 20 KVVCVGSNYAKHIKEXGSAVPEEPVLFIKPETALCDLRQPLAIPSDFGS-VHHEVELAVL 78
Query: 144 IGKKTRDVKPHEAMESVFE---------SDWQKSSRNGGQ-WLFAKSLDTFCPLGPSVVM 193
IG R +++ D Q + GQ W AK+ D CPL +
Sbjct: 79 IGATLRQATEEHVRKAIAGYGVALDLTLRDVQGKXKKAGQPWEKAKAFDNSCPLSGFIPA 138
Query: 194 KEYLNDPHDVTLTCKVNGQVKQNASSSNMLHKIPEIVSYLSEMITLLPGDVILTGTPAGV 253
E+ DP + TL+ VNG+ +Q ++++ +HKI +++Y S+ TL GDV+LTGTP GV
Sbjct: 139 AEFTGDPQNTTLSLSVNGEQRQQGTTADXIHKIVPLIAYXSKFFTLKAGDVVLTGTPDGV 198
Query: 254 G 254
G
Sbjct: 199 G 199
>pdb|1NKQ|A Chain A, Crystal Structure Of Yeast Ynq8, A Fumarylacetoacetate
Hydrolase Family Protein
pdb|1NKQ|B Chain B, Crystal Structure Of Yeast Ynq8, A Fumarylacetoacetate
Hydrolase Family Protein
pdb|1NKQ|C Chain C, Crystal Structure Of Yeast Ynq8, A Fumarylacetoacetate
Hydrolase Family Protein
pdb|1NKQ|D Chain D, Crystal Structure Of Yeast Ynq8, A Fumarylacetoacetate
Hydrolase Family Protein
pdb|1NKQ|E Chain E, Crystal Structure Of Yeast Ynq8, A Fumarylacetoacetate
Hydrolase Family Protein
pdb|1NKQ|F Chain F, Crystal Structure Of Yeast Ynq8, A Fumarylacetoacetate
Hydrolase Family Protein
Length = 259
Score = 104 bits (260), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 71/215 (33%), Positives = 109/215 (50%), Gaps = 42/215 (19%)
Query: 84 KILCIALNYKDHCDEQNKTYPETPFFFNKFPSTIVGPFS----EVTCPTNVT-------- 131
KI+CI NY H E N + P+ PFFF K S+IV P S + T P N T
Sbjct: 11 KIICIGRNYAAHIKELNNSTPKQPFFFLKPTSSIVTPLSSSLVKTTRPANSTFNGLNEDG 70
Query: 132 -----------RYLDWEVELAVIIGKKTRDV---KPHEAMESV----------FESDWQK 167
+ E+ELA+I+ K +V KP E +S+ + +
Sbjct: 71 TNPGPIFIPRGVKVHHEIELALIVSKHLSNVTKXKPEEVYDSISGVALALDLTARNVQDE 130
Query: 168 SSRNGGQWLFAKSLDTFCPLGPSVVMKE----YLNDPHDV-TLTCKVNGQVKQNASSSNM 222
+ + G W +K DTF P+ ++V +E Y ++ D+ + C VNGQ++Q+ ++
Sbjct: 131 AKKKGLPWTISKGFDTFXPIS-AIVSREKFSSYKSNLQDIFRVKCSVNGQLRQDGGTNLX 189
Query: 223 LHKIPEIVSYLSEMITLLPGDVILTGTPAGVGVFR 257
LH + +I+ ++S I+L PGD+ILTGTPAGVG +
Sbjct: 190 LHPLHKILQHISTXISLEPGDIILTGTPAGVGELK 224
>pdb|3V77|A Chain A, Crystal Structure Of A Putative Fumarylacetoacetate
IsomeraseHYDROLASE FROM OLEISPIRA ANTARCTICA
pdb|3V77|B Chain B, Crystal Structure Of A Putative Fumarylacetoacetate
IsomeraseHYDROLASE FROM OLEISPIRA ANTARCTICA
pdb|3V77|C Chain C, Crystal Structure Of A Putative Fumarylacetoacetate
IsomeraseHYDROLASE FROM OLEISPIRA ANTARCTICA
pdb|3V77|D Chain D, Crystal Structure Of A Putative Fumarylacetoacetate
IsomeraseHYDROLASE FROM OLEISPIRA ANTARCTICA
pdb|3V77|E Chain E, Crystal Structure Of A Putative Fumarylacetoacetate
IsomeraseHYDROLASE FROM OLEISPIRA ANTARCTICA
pdb|3V77|F Chain F, Crystal Structure Of A Putative Fumarylacetoacetate
IsomeraseHYDROLASE FROM OLEISPIRA ANTARCTICA
Length = 224
Score = 97.4 bits (241), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 87/182 (47%), Gaps = 12/182 (6%)
Query: 84 KILCIALNYKDHCDEQNKTYPETPFFFNKFPSTIVGPFSEVTCPTNVTRYLDWEVELAVI 143
KI+C+ NY H E N P +P F K P++ PF V + E+E+A++
Sbjct: 17 KIVCVGRNYAAHAKELNNPIPSSPILFIK-PASSAVPFGPVFSIPKDQGSVHHELEIAIL 75
Query: 144 IGKKTRDVKPHEAMESVFE---------SDWQKSSRNGGQ-WLFAKSLDTFCPLGPSVVM 193
IGK + ES+ D Q + G W AKS D CPL V +
Sbjct: 76 IGKALSRASTEQVAESIAGIGLGLDLTLRDVQDQLKEKGHPWERAKSFDGACPLTEFVAV 135
Query: 194 KEYLNDP-HDVTLTCKVNGQVKQNASSSNMLHKIPEIVSYLSEMITLLPGDVILTGTPAG 252
D + LT + NGQ +Q SS+ L I ++++ SE +L PGDVILTGTPAG
Sbjct: 136 NLASEDEWQAIGLTLEKNGQFQQQGSSAEXLFPILPLIAHXSEHFSLQPGDVILTGTPAG 195
Query: 253 VG 254
VG
Sbjct: 196 VG 197
>pdb|3R6O|A Chain A, Crystal Structure Of A Probable
2-Hydroxyhepta-2,4-Diene-1, 7- Dioateisomerase From
Mycobacterium Abscessus
Length = 329
Score = 94.0 bits (232), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 65/213 (30%), Positives = 101/213 (47%), Gaps = 18/213 (8%)
Query: 68 VKLSEVELLPPITRPDKILCIALNYKDHCDEQNKTYPET--PFFFNKFPSTIVGPFSEVT 125
V L V L PI P +++ + NY H D + P+ P F K P++I GP V
Sbjct: 89 VPLDSVALGAPIPEPGQVIALGFNYPTHSD-TDSPLPKMADPVVFMKSPTSISGPRDAVI 147
Query: 126 CPTNVTRYLDWEVELAVIIGKKTRDVKPHEAMESV--FESDWQKSSRN-------GG--- 173
P + LD+E+E+AV+IGK ++ +A++ V + ++R+ GG
Sbjct: 148 AP-RTSHALDYEIEIAVVIGKPGYRIERSQAIKHVAGYMLANDITARDVALPFGFGGSPL 206
Query: 174 --QWLFAKSLDTFCPLGPSVVMKEYLNDPHDVTLTCKVNGQVKQNASSSNMLHKIPEIVS 231
Q + K TFCP GP + ++NG+++Q+ S+ +M E+V
Sbjct: 207 QAQVVRGKGYPTFCPTGPWLFTTGSDTTFETFDFELRINGELRQSGSTVDMTLGFAEVVE 266
Query: 232 YLSEMITLLPGDVILTGTPAGVGVFRKPIESLK 264
+S I L GD+ILTGTP G G P L+
Sbjct: 267 TVSATIALRAGDIILTGTPGGCGFQFDPPRYLR 299
>pdb|3S52|A Chain A, Crystal Structure Of A Putative Fumarylacetoacetate
Hydrolase Family Protein From Yersinia Pestis Co92
pdb|3S52|B Chain B, Crystal Structure Of A Putative Fumarylacetoacetate
Hydrolase Family Protein From Yersinia Pestis Co92
pdb|3S52|C Chain C, Crystal Structure Of A Putative Fumarylacetoacetate
Hydrolase Family Protein From Yersinia Pestis Co92
pdb|3S52|D Chain D, Crystal Structure Of A Putative Fumarylacetoacetate
Hydrolase Family Protein From Yersinia Pestis Co92
Length = 221
Score = 85.5 bits (210), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 87/182 (47%), Gaps = 12/182 (6%)
Query: 83 DKILCIALNYKDHCDEQNKTYPETPFFFNKFPSTIVGPFSEVTCPTNVTRYLDWEVELAV 142
+K++C+ NY +H E T P F K + + V+ P + + E+ELAV
Sbjct: 20 NKVVCVGSNYAEHIKEXGSTASVEPVLFIKPETALCDIRQPVSIPKDFGS-VHHEIELAV 78
Query: 143 IIG---------KKTRDVKPHEAMESVFESDWQKSSRNGGQ-WLFAKSLDTFCPLGPSVV 192
+IG + R + + + + Q + GQ W AK+ D CP+ +
Sbjct: 79 LIGTPLKQASEDRVARAIAGYGVALDLTLRELQAGFKKAGQPWEKAKAFDGSCPISGFIP 138
Query: 193 MKEYLNDPHDVTLTCKVNGQVKQNASSSNMLHKIPEIVSYLSEMITLLPGDVILTGTPAG 252
+ E+ D L+ +NG+++Q ++ + + I ++SY S TL GD++LTGTP G
Sbjct: 139 VAEF-GDAQQADLSLTINGEIRQQGNTRDXITPIIPLISYXSRFFTLRAGDIVLTGTPQG 197
Query: 253 VG 254
VG
Sbjct: 198 VG 199
>pdb|2Q18|X Chain X, 2-Keto-3-Deoxy-D-Arabinonate Dehydratase
pdb|2Q19|X Chain X, 2-keto-3-deoxy-d-arabinonate Dehydratase Apo Form
pdb|2Q1A|X Chain X, 2-Keto-3-Deoxy-D-Arabinonate Dehydratase Complexed With
Magnesium And 2-Oxobutyrate
pdb|2Q1C|X Chain X, 2-Keto-3-Deoxy-D-Arabinonate Dehydratase Complexed With
Calcium And 2- Oxobutyrate
pdb|2Q1D|X Chain X, 2-Keto-3-Deoxy-D-Arabinonate Dehydratase Complexed With
Magnesium And 2,5-Dioxopentanoate
pdb|3BQB|A Chain A, Hexagonal Kristal Form Of 2-Keto-3-Deoxyarabinonate
Dehydratase
pdb|3BQB|X Chain X, Hexagonal Kristal Form Of 2-Keto-3-Deoxyarabinonate
Dehydratase
pdb|3BQB|Z Chain Z, Hexagonal Kristal Form Of 2-Keto-3-Deoxyarabinonate
Dehydratase
pdb|3BQB|Y Chain Y, Hexagonal Kristal Form Of 2-Keto-3-Deoxyarabinonate
Dehydratase
Length = 293
Score = 34.3 bits (77), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 67/149 (44%), Gaps = 14/149 (9%)
Query: 108 FFFNKFPSTIVGPFSEVTCPTNVTRYLDW---EVELAVIIGKKTRDVKPHEAMESVFESD 164
FF P+ VG + ++ +W E ELAV++ + + + M+ V D
Sbjct: 115 IFFKATPNRCVGHGEAIAVRSDS----EWTLPEPELAVVLDSNGK-ILGYTIMDDVSARD 169
Query: 165 WQKSSRNGGQWLFAKSLDTFCPLGPSVVMKEYLNDPHDVTLTCKV--NGQV--KQNASSS 220
+ + N +K C GP +V + + +P+ + +T K+ G+V + + +++
Sbjct: 170 LE--AENPLYLPQSKIYAGCCAFGPVIVTSDEIKNPYSLDITLKIVREGRVFFEGSVNTN 227
Query: 221 NMLHKIPEIVSYLSEMITLLPGDVILTGT 249
M KI E + YL + G ++ TGT
Sbjct: 228 KMRRKIEEQIQYLIRDNPIPDGTILTTGT 256
>pdb|2JN8|A Chain A, Solution Nmr Structure Of Q8zrj2 From Salmonella
Typhimurium. Northeast Structural Genomics Target Str65
Length = 115
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 48/121 (39%), Gaps = 19/121 (15%)
Query: 121 FSEVTCPTNVTRYLDWEVELAVIIGKKTRDVKPHEAMESVFESDWQKSSRNGGQWLFAKS 180
F + + PT + + LD+ I G T PH ES + +
Sbjct: 4 FKDKSMPTAIEKALDF------IGGMNTSASVPHSMDEST------------AKGILKYL 45
Query: 181 LDTFCPLGPSVVMKEYLNDPHDVTLTCKVNGQVKQNASSSNMLHKIPEIVS-YLSEMITL 239
D P+ P VV+ + + T KV G ++ AS + +L K PE S Y+ E +
Sbjct: 46 HDLGVPVSPEVVVARGEQEGWNPEFTKKVAGWAEKVASGNRILIKNPEYFSTYMQEQLKE 105
Query: 240 L 240
L
Sbjct: 106 L 106
>pdb|2ES9|A Chain A, Crystal Structure Of Q8zrj2 From Salmonella Typhimurium.
Nesg Target Str65
Length = 115
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 47/121 (38%), Gaps = 19/121 (15%)
Query: 121 FSEVTCPTNVTRYLDWEVELAVIIGKKTRDVKPHEAMESVFESDWQKSSRNGGQWLFAKS 180
F + + PT + + LD+ I G T PH ES + +
Sbjct: 4 FKDKSXPTAIEKALDF------IGGXNTSASVPHSXDESTAKG------------ILKYL 45
Query: 181 LDTFCPLGPSVVMKEYLNDPHDVTLTCKVNGQVKQNASSSNMLHKIPEIVS-YLSEMITL 239
D P+ P VV+ + + T KV G ++ AS + +L K PE S Y E +
Sbjct: 46 HDLGVPVSPEVVVARGEQEGWNPEFTKKVAGWAEKVASGNRILIKNPEYFSTYXQEQLKE 105
Query: 240 L 240
L
Sbjct: 106 L 106
>pdb|4GYI|A Chain A, Crystal Structure Of The Rio2
Kinase-AdpMG2+-Phosphoaspartate Complex From Chaetomium
Thermophilum
Length = 397
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 10/80 (12%)
Query: 128 TNVTRYL---DWEVELAVIIGKKTRDVKPHEAMESVFESDWQKSSRNGGQWLFAKSLDTF 184
T R+L DW V AV +G K ++ P +E + + GG KS+ T
Sbjct: 6 TRAMRHLTAEDWRVLTAVEMGSKNHEIVPTPLIEKI-------ARLRGGSSGVHKSIATL 58
Query: 185 CPLGPSVVMKEYLNDPHDVT 204
G MKE D + +T
Sbjct: 59 AKAGLIARMKEAKYDGYRLT 78
>pdb|4GYG|A Chain A, Crystal Structure Of The Rio2 Kinase From Chaetomium
Thermophilum
Length = 397
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 10/80 (12%)
Query: 128 TNVTRYL---DWEVELAVIIGKKTRDVKPHEAMESVFESDWQKSSRNGGQWLFAKSLDTF 184
T R+L DW V AV +G K ++ P +E + + GG KS+ T
Sbjct: 6 TRAMRHLTAEDWRVLTAVEMGSKNHEIVPTPLIEKI-------ARLRGGSSGVHKSIATL 58
Query: 185 CPLGPSVVMKEYLNDPHDVT 204
G MKE D + +T
Sbjct: 59 AKAGLIARMKEAKYDGYRLT 78
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,411,209
Number of Sequences: 62578
Number of extensions: 350899
Number of successful extensions: 899
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 852
Number of HSP's gapped (non-prelim): 18
length of query: 264
length of database: 14,973,337
effective HSP length: 97
effective length of query: 167
effective length of database: 8,903,271
effective search space: 1486846257
effective search space used: 1486846257
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)