Query psy5683
Match_columns 264
No_of_seqs 221 out of 1435
Neff 7.1
Searched_HMMs 46136
Date Fri Aug 16 23:58:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5683.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5683hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0179 MhpD 2-keto-4-pentenoa 100.0 1.1E-60 2.4E-65 426.7 17.7 188 70-259 47-245 (266)
2 KOG1535|consensus 100.0 2E-59 4.3E-64 393.9 15.3 186 72-259 2-197 (217)
3 TIGR02303 HpaG-C-term 4-hydrox 100.0 8.7E-57 1.9E-61 399.2 18.3 190 67-260 28-226 (245)
4 PLN02856 fumarylacetoacetase 100.0 1.8E-49 3.8E-54 372.4 22.9 244 4-256 25-364 (424)
5 PRK10691 hypothetical protein; 100.0 1.4E-49 3E-54 347.8 17.5 176 83-259 17-202 (219)
6 PRK15203 4-hydroxyphenylacetat 100.0 4.5E-49 9.7E-54 374.4 18.3 183 74-259 214-405 (429)
7 PRK15203 4-hydroxyphenylacetat 100.0 5.4E-49 1.2E-53 373.9 17.0 167 83-259 3-186 (429)
8 TIGR01266 fum_ac_acetase fumar 100.0 2.1E-46 4.6E-51 351.1 20.4 245 3-256 18-356 (415)
9 PRK12764 hypothetical protein; 100.0 5.3E-46 1.1E-50 359.1 17.8 181 75-260 14-203 (500)
10 TIGR02305 HpaG-N-term 4-hydrox 100.0 2.4E-44 5.2E-49 312.0 17.2 175 83-259 1-188 (205)
11 PF01557 FAA_hydrolase: Fumary 100.0 7.5E-42 1.6E-46 298.5 11.2 178 84-263 1-196 (218)
12 TIGR03220 catechol_dmpE 2-oxop 99.9 9.5E-23 2.1E-27 182.3 15.5 164 86-259 55-238 (255)
13 PRK11342 mhpD 2-keto-4-penteno 99.9 2.2E-21 4.7E-26 174.2 13.4 169 85-259 58-242 (262)
14 KOG2843|consensus 99.8 3.2E-18 6.9E-23 151.4 9.6 233 15-253 28-355 (420)
15 TIGR02312 HpaH 2-oxo-hepta-3-e 99.7 8.6E-17 1.9E-21 144.8 13.1 165 86-259 60-249 (267)
16 COG3971 2-keto-4-pentenoate hy 99.5 4.2E-13 9E-18 118.2 10.8 160 88-257 62-242 (264)
17 TIGR03218 catechol_dmpH 4-oxal 99.4 8E-12 1.7E-16 112.4 14.8 165 87-257 64-244 (263)
18 COG3970 Fumarylacetoacetate (F 99.4 3.6E-12 7.8E-17 114.1 9.7 141 106-250 168-317 (379)
19 COG3802 GguC Uncharacterized p 99.3 4.8E-11 1E-15 104.7 11.0 229 1-245 3-282 (333)
20 PF10370 DUF2437: Domain of un 97.9 1.3E-05 2.7E-10 54.2 2.8 50 1-78 1-50 (50)
21 PF11010 DUF2848: Protein of u 97.3 0.001 2.2E-08 56.9 8.3 154 94-261 13-176 (194)
22 PF09298 FAA_hydrolase_N: Fuma 93.7 0.075 1.6E-06 41.5 3.5 71 3-78 5-107 (107)
23 PRK06488 sulfur carrier protei 69.1 9.5 0.00021 26.4 4.1 43 205-252 1-63 (65)
24 KOG1379|consensus 54.5 6.6 0.00014 36.4 1.3 52 199-250 187-254 (330)
25 PRK06944 sulfur carrier protei 46.9 49 0.0011 22.6 4.6 16 237-252 48-63 (65)
26 PRK06083 sulfur carrier protei 43.3 68 0.0015 23.7 5.1 32 199-234 13-44 (84)
27 PRK08053 sulfur carrier protei 43.2 47 0.001 23.0 4.0 15 237-251 49-63 (66)
28 PF03990 DUF348: Domain of unk 42.5 87 0.0019 19.8 5.0 38 205-247 2-39 (43)
29 PRK07440 hypothetical protein; 40.7 66 0.0014 22.7 4.5 26 204-233 4-29 (70)
30 cd01617 DCX Ubiquitin-like dom 38.4 37 0.0008 24.7 3.0 49 204-252 2-54 (80)
31 PF13799 DUF4183: Domain of un 37.1 20 0.00042 26.8 1.3 38 202-250 42-79 (84)
32 PRK07696 sulfur carrier protei 37.1 58 0.0013 22.8 3.7 26 205-233 1-26 (67)
33 PRK05863 sulfur carrier protei 36.2 61 0.0013 22.4 3.7 44 205-252 1-63 (65)
34 PRK05659 sulfur carrier protei 36.0 65 0.0014 22.0 3.8 14 237-250 49-62 (66)
35 cd00565 ThiS ThiaminS ubiquiti 31.2 79 0.0017 21.7 3.6 16 237-252 48-63 (65)
36 TIGR01683 thiS thiamine biosyn 28.7 92 0.002 21.3 3.6 16 237-252 47-62 (64)
37 PF00498 FHA: FHA domain; Int 28.4 35 0.00076 23.2 1.4 15 234-248 54-68 (68)
38 cd03701 IF2_IF5B_II IF2_IF5B_I 27.5 35 0.00075 25.7 1.3 18 235-252 23-40 (95)
39 PF02946 GTF2I: GTF2I-like rep 27.3 56 0.0012 23.9 2.2 25 237-262 30-54 (76)
40 cd01674 Homoaconitase_Swivel H 27.2 73 0.0016 25.7 3.1 34 225-258 23-62 (129)
41 cd03703 aeIF5B_II aeIF5B_II: T 23.8 51 0.0011 25.8 1.6 17 236-252 24-40 (110)
42 PRK15175 Vi polysaccharide exp 22.7 83 0.0018 29.7 3.1 39 203-249 198-236 (355)
43 COG0146 HyuB N-methylhydantoin 21.5 60 0.0013 32.6 2.0 33 219-251 62-94 (563)
44 PRK08364 sulfur carrier protei 21.3 2.7E+02 0.006 19.3 4.9 16 236-251 52-67 (70)
No 1
>COG0179 MhpD 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.1e-60 Score=426.73 Aligned_cols=188 Identities=45% Similarity=0.843 Sum_probs=179.6
Q ss_pred CCCcEEcCCCccCCeEEEEecCcHHHHHHhCCC--CCCCCEEEecCCCceecCCCeeecCCCCcCCceeeeEEEEEEcCC
Q psy5683 70 LSEVELLPPITRPDKILCIALNYKDHCDEQNKT--YPETPFFFNKFPSTIVGPFSEVTCPTNVTRYLDWEVELAVIIGKK 147 (264)
Q Consensus 70 ~~~v~ll~Pv~~p~ki~~~g~Ny~~h~~e~~~~--~p~~P~~F~K~~~s~~g~g~~I~~P~~~~~~~d~E~ELavVIgk~ 147 (264)
+.++++++|+.+++||||+|+||.+|++|++.. .|++|.+|.|+++++++|+++|.+|+. +.++|||+||||||||+
T Consensus 47 ~~~~~~~~~~~~~~ki~cvG~NY~~Ha~E~~~~~~~p~~P~~F~K~~~a~~~~~~~i~~P~~-s~~~dyE~ELavvIGk~ 125 (266)
T COG0179 47 LAEVRLLAPLPPPGKIVCVGRNYADHAEEMGKDRDIPEEPVFFLKPPTAVIGPNDPIPLPPG-SKGLDYEGELAVVIGKR 125 (266)
T ss_pred ccccccccCCCCCCcEEEEechHHHHHHHhccCCCCCCCCeeeccCcccccCCCCceECCCC-CCCcceeEEEEEEECCc
Confidence 678999999998999999999999999999985 899999999999999999999999999 99999999999999999
Q ss_pred CCCCChhhHhhhhh---------hhhcccccccCCCceeccccCCCcccCCcccccccCCCCCceEEEEEECCEEEEecc
Q psy5683 148 TRDVKPHEAMESVF---------ESDWQKSSRNGGQWLFAKSLDTFCPLGPSVVMKEYLNDPHDVTLTCKVNGQVKQNAS 218 (264)
Q Consensus 148 ~~~i~~~~A~~~i~---------ard~q~~~~~~~~~~~~K~~d~~~plGP~ivt~de~~d~~~l~i~~~vNGe~~q~~~ 218 (264)
+++|++++|++||+ +||+|.. ..+.+|.+||+||+|||+|||+++.+|+.|+++|.|.++||||+||++|
T Consensus 126 ~~~v~~e~A~d~I~GYti~nD~T~Rd~Q~~-~~~~~w~~aK~~d~~~Pigp~iv~~~e~~d~~~l~l~~~vNGe~~Q~g~ 204 (266)
T COG0179 126 GKDVSVEDALDYIAGYTIGNDVTARDLQME-EKGRPWTRAKGFDTFAPVGPWIVTKDEISDPQNLPLSLRVNGEVRQRGN 204 (266)
T ss_pred CCCCCHHHHHhhheEEeeeeecchhcchhh-hhcCCcccccccCCCCCceeEEeccccCCCCccceEEEEECCEEEecCc
Confidence 99999999999999 9999942 3688999999999999999999999999999999999999999999999
Q ss_pred ccccccChHHHHHHHHCCcccCCCCEEEcCCCCCCCCCCCC
Q psy5683 219 SSNMLHKIPEIVSYLSEMITLLPGDVILTGTPAGVGVFRKP 259 (264)
Q Consensus 219 t~~m~~~~~~lia~lS~~~tL~pGDvI~TGTp~Gvg~~~~p 259 (264)
|++|+|+|++||+|+|++|||+|||||+||||+|||..+..
T Consensus 205 t~~Mi~~i~~lI~~lS~~~tL~pGDvI~TGTP~Gvg~l~~G 245 (266)
T COG0179 205 TSDMIFSIPELIAYLSRFMTLEPGDVILTGTPSGVGFLKPG 245 (266)
T ss_pred HHHcccCHHHHHHHHhCCcccCCCCEEEeCCCCCcccCCCC
Confidence 99999999999999999999999999999999999976654
No 2
>KOG1535|consensus
Probab=100.00 E-value=2e-59 Score=393.93 Aligned_cols=186 Identities=47% Similarity=0.809 Sum_probs=178.4
Q ss_pred CcEEcCCCccCCeEEEEecCcHHHHHHhCCCCCCCCEEEecCCCceecCCCeeecCCCCcCCceeeeEEEEEEcCCCCCC
Q psy5683 72 EVELLPPITRPDKILCIALNYKDHCDEQNKTYPETPFFFNKFPSTIVGPFSEVTCPTNVTRYLDWEVELAVIIGKKTRDV 151 (264)
Q Consensus 72 ~v~ll~Pv~~p~ki~~~g~Ny~~h~~e~~~~~p~~P~~F~K~~~s~~g~g~~I~~P~~~~~~~d~E~ELavVIgk~~~~i 151 (264)
++.+++|+..|.||+|+|+||.+|++|++.+.|++|.+|.|+.+|++++|++|.+|+. ++.+|||+||++||||+|+++
T Consensus 2 ~~~~~~~~~~~~KIVcVg~NY~dh~~E~~~~~PkeP~~FlKptss~v~~g~~i~~p~~-~~~lh~EvEL~vVigK~~~~v 80 (217)
T KOG1535|consen 2 DVMLLRPLKWPTKIVCVGRNYADHCKELNNPVPKEPFFFLKPTSSIVGPGGPIVIPPG-SKGLHHEVELAVVIGKKGSSV 80 (217)
T ss_pred ccchhhhhhcCCeEEEecccHHHHHHHhCCCCCCCCeEEeecchhhcCCCCceEcCCC-cCccceeEEEEEEeccccccC
Confidence 5678999999999999999999999999999999999999999999999999999999 899999999999999999999
Q ss_pred ChhhHhhhhh---------hhhcccc-cccCCCceeccccCCCcccCCcccccccCCCCCceEEEEEECCEEEEeccccc
Q psy5683 152 KPHEAMESVF---------ESDWQKS-SRNGGQWLFAKSLDTFCPLGPSVVMKEYLNDPHDVTLTCKVNGQVKQNASSSN 221 (264)
Q Consensus 152 ~~~~A~~~i~---------ard~q~~-~~~~~~~~~~K~~d~~~plGP~ivt~de~~d~~~l~i~~~vNGe~~q~~~t~~ 221 (264)
++.+|++||+ |||||.. +..|.+|++||+||+|||+| -+++.+.++||+++.+.++||||+||+|+|++
T Consensus 81 ~~~~amd~v~Gy~valDmtARd~q~~ak~~g~pw~l~K~~Dtf~Pis-~~vpk~~v~Dp~nl~L~l~VnG~~~Q~g~T~~ 159 (217)
T KOG1535|consen 81 KKKDAMDYVGGYAVALDMTARDWQDEAKKKGLPWTLGKGFDTFTPIS-AIVPKEKVPDPHNLWLWLRVNGETRQTGNTSL 159 (217)
T ss_pred ChhhcccccccEEEEeeccchhhhhhhhhcCCCeeeccccCccCccc-ccccHHHCCCccceEEEEEEccEEEecCchhh
Confidence 9999999999 9999983 45789999999999999999 58899999999999999999999999999999
Q ss_pred cccChHHHHHHHHCCcccCCCCEEEcCCCCCCCCCCCC
Q psy5683 222 MLHKIPEIVSYLSEMITLLPGDVILTGTPAGVGVFRKP 259 (264)
Q Consensus 222 m~~~~~~lia~lS~~~tL~pGDvI~TGTp~Gvg~~~~p 259 (264)
|+|+++.+|+|+|++|||+|||||+||||.|||..+..
T Consensus 160 mifkip~li~~is~~~tL~~GDvILTGTP~GVg~v~~G 197 (217)
T KOG1535|consen 160 MIFKIPDLISRLSQIMTLEPGDVILTGTPEGVGEVKPG 197 (217)
T ss_pred heecHHHHHHHHhhheeecCCCEEEecCCCccccccCC
Confidence 99999999999999999999999999999999998843
No 3
>TIGR02303 HpaG-C-term 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, C-terminal subunit. This model represents one of two subunits/domains of the bifunctional isomerase/decarboxylase involved in 4-hydroxyphenylacetate degradation. In E. coli and some other species this enzyme is encoded by a single polypeptide containing both this domain and the closely related N-terminal domain (TIGR02305). In other species such as Pasteurella multocida these domains are found as two separate proteins (usually as tandem genes). Together, these domains carry out the decarboxylation of 5-oxopent-3-ene-1,2,5-tricarboxylic acid (OPET) to 2-hydroxy-2,4-diene-1,7-dioate (HHDD) and the subsequent isomerization to 2-oxohept-3-ene-1,7-dioate (OHED).
Probab=100.00 E-value=8.7e-57 Score=399.16 Aligned_cols=190 Identities=38% Similarity=0.630 Sum_probs=180.7
Q ss_pred cccCCCcEEcCCCccCCeEEEEecCcHHHHHHhCCCCCCCCEEEecCCCceecCCCeeecCCCCcCCceeeeEEEEEEcC
Q psy5683 67 MVKLSEVELLPPITRPDKILCIALNYKDHCDEQNKTYPETPFFFNKFPSTIVGPFSEVTCPTNVTRYLDWEVELAVIIGK 146 (264)
Q Consensus 67 ~~~~~~v~ll~Pv~~p~ki~~~g~Ny~~h~~e~~~~~p~~P~~F~K~~~s~~g~g~~I~~P~~~~~~~d~E~ELavVIgk 146 (264)
.+++++++|++|+. |+||+|+|+||++|++|++.+.|+.|.+|+|+++++++++++|.+|.. +..+|||+|||+||||
T Consensus 28 ~~~~~~v~ll~P~~-p~ki~~vg~Ny~~h~~e~~~~~p~~P~~F~Kp~~s~~g~~~~i~~P~~-~~~ld~E~EL~vvigk 105 (245)
T TIGR02303 28 ALPPEQVTWLPPFE-PGTIFALGLNYADHASELGFSPPEEPLVFLKGNNTLTGHKGVTYRPKD-VRFMHYECELAVVVGK 105 (245)
T ss_pred ccccccceEcCCCC-CCeEEEEeCCHHHHHHHhCCCCCCCCEEEEcCcceeeCCCCcEECCCC-CCceeEEEEEEEEECC
Confidence 57899999999995 899999999999999999999999999999999999999999999998 8899999999999999
Q ss_pred CCCCCChhhHhhhhh---------hhhcccccccCCCceeccccCCCcccCCcccccccCCCCCceEEEEEECCEEEEec
Q psy5683 147 KTRDVKPHEAMESVF---------ESDWQKSSRNGGQWLFAKSLDTFCPLGPSVVMKEYLNDPHDVTLTCKVNGQVKQNA 217 (264)
Q Consensus 147 ~~~~i~~~~A~~~i~---------ard~q~~~~~~~~~~~~K~~d~~~plGP~ivt~de~~d~~~l~i~~~vNGe~~q~~ 217 (264)
+++++++++|++||+ +||+|. ..+.+|.++|+||+|||+|||++|+++++|+.+++|++++||+++|++
T Consensus 106 ~~~~v~~~~A~~~I~Gytv~nD~T~Rd~q~--~~~~~~~~aK~~D~~~plGp~i~t~~~~~d~~~l~i~l~vNGe~~q~g 183 (245)
T TIGR02303 106 TAKNVKREDAMDYVLGYTIANDYAIRDYLE--NYYRPNLRVKNRDTFTPIGPWIVDKEDVEDPMNLWLRTYVNGELTQEG 183 (245)
T ss_pred CCCCCCHHHHhhheeEEEEEeecchHHHHh--hhcCCcccccCCCCCEeeCCcCCCHHHcCCccccEEEEEECCEEEEec
Confidence 999999999999999 999996 346799999999999999999999999989999999999999999999
Q ss_pred cccccccChHHHHHHHHCCcccCCCCEEEcCCCCCCCCCCCCC
Q psy5683 218 SSSNMLHKIPEIVSYLSEMITLLPGDVILTGTPAGVGVFRKPI 260 (264)
Q Consensus 218 ~t~~m~~~~~~lia~lS~~~tL~pGDvI~TGTp~Gvg~~~~p~ 260 (264)
++++|+|++++||+|+|+++||+|||||+||||.|++..+...
T Consensus 184 ~t~~ml~~v~~Li~~ls~~~tL~pGDvIlTGTp~g~~~l~~GD 226 (245)
T TIGR02303 184 NTSDMIFSVAELIEYLSEFMTLEPGDVILTGTPKGLSDVKPGD 226 (245)
T ss_pred CHHHhccCHHHHHHHHhcCCCcCCCCEEEcCCCCCCeEcCCCC
Confidence 9999999999999999999999999999999999998766443
No 4
>PLN02856 fumarylacetoacetase
Probab=100.00 E-value=1.8e-49 Score=372.38 Aligned_cols=244 Identities=20% Similarity=0.309 Sum_probs=204.7
Q ss_pred EEEeeCCCCCCCCceEEEEEccCCEEEECCCCC--------------CCCcccHHHHHhCCcHHHHHHHHHHhhc-----
Q psy5683 4 VQYKPLNGNGNTPQRLGVQLERNGEIINLSSVD--------------SSMPNNLVQFLEGGPELLEKAKRMVSEC----- 64 (264)
Q Consensus 4 ~~~~~~~~~~~~~~~~gvv~~~~~~v~~l~~~~--------------~~~p~~l~~~l~~~~~~~~~~~~~~~~~----- 64 (264)
--|++.++ +.+|+||.++ +.|+||.... ....++|++|++.+...++++|+.++..
T Consensus 25 Gvfs~~~~---~~~r~gvaig--d~vldl~~~~~~~~~~~~~~~~~~~f~~~~Ln~f~alg~~~~~~~R~~l~~~l~~~~ 99 (424)
T PLN02856 25 GVFSPESG---ATPRPGVAIG--DYVLDLSALSEAGLFDGPLLSDSDCFSQPTLNKFMAMGRPAWKEARSTLQRLLSADE 99 (424)
T ss_pred eEEECCCC---CCceeEEEeC--CEEEeHHHHHhcCCCCcccccccccccCcCHHHHHhCCHHHHHHHHHHHHHHhhcCC
Confidence 34665543 5789999998 5899986531 0123589999999999999988766431
Q ss_pred -----------cccccCCCcEEcCCCccCCeEEEEecCcHHHHHHhCCC--------CCCC---CEEEecCCCceecCCC
Q psy5683 65 -----------KCMVKLSEVELLPPITRPDKILCIALNYKDHCDEQNKT--------YPET---PFFFNKFPSTIVGPFS 122 (264)
Q Consensus 65 -----------~~~~~~~~v~ll~Pv~~p~ki~~~g~Ny~~h~~e~~~~--------~p~~---P~~F~K~~~s~~g~g~ 122 (264)
...+++++|+|++|+ +++++.|+ .||.+|++|.|.. .|.+ |++|+|+++|++++|+
T Consensus 100 ~~l~~~~~~~~~~l~~~~~v~l~~P~-~~~~~~df-~~~~~Ha~n~g~~fr~~~~~l~p~~~~~Pv~y~gr~sSvv~sg~ 177 (424)
T PLN02856 100 PALRDNSELRKKAFHPMSDVEMLLPA-VIGDYTDF-FSSREHATNVGTMFRGPENALNPNWLHLPIGYHGRASSVVPSGT 177 (424)
T ss_pred cccccchhhhccceeehhhceEcCCC-ccceEEEE-ecHHHHHHHhhhhccCCccCCCcccccCCCEEcCCCceEEcCCC
Confidence 125789999999999 68899998 9999999998643 1444 9999999999999999
Q ss_pred eeecCCC--------------CcCCceeeeEEEEEEcCC---CCCCChhhHhhhhh---------hhhcccccccCCCce
Q psy5683 123 EVTCPTN--------------VTRYLDWEVELAVIIGKK---TRDVKPHEAMESVF---------ESDWQKSSRNGGQWL 176 (264)
Q Consensus 123 ~I~~P~~--------------~~~~~d~E~ELavVIgk~---~~~i~~~~A~~~i~---------ard~q~~~~~~~~~~ 176 (264)
+|.+|.+ .++.+|||+|||+||||. |++|++++|++||| +||+|.+++...+|+
T Consensus 178 ~I~rP~gq~~~~~~~~~p~f~~s~~lDyE~ELavVIGk~~~~g~~I~~~~A~d~IfGytl~ND~SARDiQ~wE~~plgpf 257 (424)
T PLN02856 178 DIRRPRGQLHPNDGSSRPYFGPSAKLDFELEMAAFVGPGNELGKPIPVNEAKDHIFGLVLMNDWSARDIQKWEYVPLGPF 257 (424)
T ss_pred ceeCCCCCccCCCCCCCCcccCcCceEEEEEEEEEECcCccccCCCCHHHHHhhheEEEEeeechhhhhhhhhcccCCcc
Confidence 9999983 267899999999999997 89999999999999 999998766677899
Q ss_pred eccccCCCcccCCcccccccCC--------------------CCCceEEEEEE--------CCEEEEeccccccccChHH
Q psy5683 177 FAKSLDTFCPLGPSVVMKEYLN--------------------DPHDVTLTCKV--------NGQVKQNASSSNMLHKIPE 228 (264)
Q Consensus 177 ~~K~~d~~~plGP~ivt~de~~--------------------d~~~l~i~~~v--------NGe~~q~~~t~~m~~~~~~ 228 (264)
+|||||++ +||||||.|+++ +..++.|+++| ||+++|++|+++|+|++++
T Consensus 258 ~gKsF~t~--igPwIVt~dal~p~r~~~~~~dp~~l~yl~~~~~~~~~i~l~v~v~~nG~~ng~~~q~~nt~~M~ws~~q 335 (424)
T PLN02856 258 LGKSFATT--ISPWIVTLDALEPFRCDAPAQDPPPLPYLAEKNRKSYDISLEVAIKPAGQSKASVVCRSNFKHLYWTLAQ 335 (424)
T ss_pred cccCCCCC--CcCeEEcccccccccccccccCcccccccccccccceeEEEEEEEeeCCcccceeEEcCCHHHcCCCHHH
Confidence 99999985 999999999884 12356677776 6689999999999999999
Q ss_pred HHHH-HHCCcccCCCCEEEcCCCCCCCCC
Q psy5683 229 IVSY-LSEMITLLPGDVILTGTPAGVGVF 256 (264)
Q Consensus 229 lia~-lS~~~tL~pGDvI~TGTp~Gvg~~ 256 (264)
||+| +|+++||+|||||+||||+|++..
T Consensus 336 lIah~~s~g~tL~pGDLi~TGTpsG~~~~ 364 (424)
T PLN02856 336 QLAHHTVNGCNLRPGDLLGSGTISGPEPG 364 (424)
T ss_pred HHHHHHhCCeecCCCCEEEeCCCCCCccC
Confidence 9997 589999999999999999998644
No 5
>PRK10691 hypothetical protein; Provisional
Probab=100.00 E-value=1.4e-49 Score=347.83 Aligned_cols=176 Identities=33% Similarity=0.605 Sum_probs=163.7
Q ss_pred CeEEEEecCcHHHHHHhCCCCCCCCEEEecCCCceecCCCeeecCCCCcCCceeeeEEEEEEcCCCCCCChhhHhhhhh-
Q psy5683 83 DKILCIALNYKDHCDEQNKTYPETPFFFNKFPSTIVGPFSEVTCPTNVTRYLDWEVELAVIIGKKTRDVKPHEAMESVF- 161 (264)
Q Consensus 83 ~ki~~~g~Ny~~h~~e~~~~~p~~P~~F~K~~~s~~g~g~~I~~P~~~~~~~d~E~ELavVIgk~~~~i~~~~A~~~i~- 161 (264)
+||+|+|+||++|++|++.+.|++|++|+|+++++++|+++|.+|.. +.++|||+|||+||||+++++++++|++||+
T Consensus 17 ~ki~~vg~Ny~~h~~e~~~~~p~~P~~F~K~~~~~~~~~~~i~~P~~-~~~ld~E~ELavvigk~~~~v~~~~a~~~V~g 95 (219)
T PRK10691 17 SKVVCVGSNYAKHIKEMGSATPEEPVLFIKPETALCDLRQPLAIPKD-FGSVHHEVELAVLIGATLRQATEEHVRKAIAG 95 (219)
T ss_pred CcEEEEecCHHHHHHHhCCCCCCCCEEEECCcceeeCCCCcEECCCC-CCCeeEEEEEEEEECCCCCCCCHHHHhhhheE
Confidence 69999999999999999999999999999999999999999999998 8899999999999999999999999999999
Q ss_pred --------hhhcccc-cccCCCceeccccCCCcccCCcccccccCCCCCceEEEEEECCEEEEeccccccccChHHHHHH
Q psy5683 162 --------ESDWQKS-SRNGGQWLFAKSLDTFCPLGPSVVMKEYLNDPHDVTLTCKVNGQVKQNASSSNMLHKIPEIVSY 232 (264)
Q Consensus 162 --------ard~q~~-~~~~~~~~~~K~~d~~~plGP~ivt~de~~d~~~l~i~~~vNGe~~q~~~t~~m~~~~~~lia~ 232 (264)
+||+|.. +..+.+|.++|+||+|||+|||+++.+...|+.+++++++|||+++|++++++|+|+++++|+|
T Consensus 96 yt~~nDvt~r~~q~~~~~~~~~~~~~K~~D~~~~~gp~i~~~~~~~d~~~l~i~l~vNG~~~q~g~~~~mi~~~~~lia~ 175 (219)
T PRK10691 96 YGVALDLTLRDLQGKMKKAGQPWEKAKAFDNSCPISGFIPVAEFTGDPQNTTLGLSVNGEVRQQGNTADMIHPIVPLIAY 175 (219)
T ss_pred EEEEEEeEhhhhhhhhccccCCccccccCCCCcCcCCcEEchhccCCccccEEEEEECCEEEEecCHHHhccCHHHHHHH
Confidence 8888862 1234589999999999999999987665468999999999999999999999999999999999
Q ss_pred HHCCcccCCCCEEEcCCCCCCCCCCCC
Q psy5683 233 LSEMITLLPGDVILTGTPAGVGVFRKP 259 (264)
Q Consensus 233 lS~~~tL~pGDvI~TGTp~Gvg~~~~p 259 (264)
+|+++||+|||||+||||.|++..+..
T Consensus 176 ls~~~tL~aGDvI~TGTp~g~~~l~~G 202 (219)
T PRK10691 176 MSRFFTLRAGDVVLTGTPEGVGPLQSG 202 (219)
T ss_pred HhcCCccCCCCEEEcCCCCCCEECCCC
Confidence 999999999999999999999876543
No 6
>PRK15203 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; Provisional
Probab=100.00 E-value=4.5e-49 Score=374.40 Aligned_cols=183 Identities=35% Similarity=0.584 Sum_probs=174.1
Q ss_pred EEcCCCccCCeEEEEecCcHHHHHHhCCCCCCCCEEEecCCCceecCCCeeecCCCCcCCceeeeEEEEEEcCCCCCCCh
Q psy5683 74 ELLPPITRPDKILCIALNYKDHCDEQNKTYPETPFFFNKFPSTIVGPFSEVTCPTNVTRYLDWEVELAVIIGKKTRDVKP 153 (264)
Q Consensus 74 ~ll~Pv~~p~ki~~~g~Ny~~h~~e~~~~~p~~P~~F~K~~~s~~g~g~~I~~P~~~~~~~d~E~ELavVIgk~~~~i~~ 153 (264)
.+++|++.++||+|+|+||.+|++|++.+.|+.|++|+|+++++++++++|.+|+. +..+|||+|||+||||+++++++
T Consensus 214 ~~~~p~~~~~ki~~vg~Ny~~h~~e~~~~~p~~P~~F~K~~~s~~g~~~~i~~P~~-~~~ld~E~ELavVigk~~~~v~~ 292 (429)
T PRK15203 214 SFPTPPHPHGTLFALGLNYADHASELEFKPPEEPLVFLKAPNTLTGDNQTSVRPNN-IEYMHYEAELVVVIGKQARKVSE 292 (429)
T ss_pred ccccCCCCCCeEEEEcCCHHHHHHHhCCCCCCCCEEEEcCcceeeCCCCCEECCCC-CCceEEEEEEEEEECCCCCCCCH
Confidence 48889999999999999999999999998999999999999999999999999998 89999999999999999999999
Q ss_pred hhHhhhhh---------hhhcccccccCCCceeccccCCCcccCCcccccccCCCCCceEEEEEECCEEEEecccccccc
Q psy5683 154 HEAMESVF---------ESDWQKSSRNGGQWLFAKSLDTFCPLGPSVVMKEYLNDPHDVTLTCKVNGQVKQNASSSNMLH 224 (264)
Q Consensus 154 ~~A~~~i~---------ard~q~~~~~~~~~~~~K~~d~~~plGP~ivt~de~~d~~~l~i~~~vNGe~~q~~~t~~m~~ 224 (264)
++|++||+ +||+|. ....+|.++|+||+|||+|||+++.|++.|+.+++++++|||+++|++++++|+|
T Consensus 293 ~ea~~~V~Gy~~~nD~t~rd~q~--~~~~~w~~~K~~d~~~plGp~~v~~d~~~d~~~l~i~l~vNG~~vq~g~t~~m~~ 370 (429)
T PRK15203 293 ADAMDYVAGYTVCNDYAIRDYLE--NYYRPNLRVKSRDGLTPILSTIVPKEAIPDPHNLTLRTFVNGELRQQGTTADLIF 370 (429)
T ss_pred HHHhhheeEEEEEEeccchhhhh--hhcCCceEeccCCCCcCCCCCEeChhhcCCccceEEEEEECCEEEEeeCHHHhcc
Confidence 99999999 899986 3467899999999999999999999999899999999999999999999999999
Q ss_pred ChHHHHHHHHCCcccCCCCEEEcCCCCCCCCCCCC
Q psy5683 225 KIPEIVSYLSEMITLLPGDVILTGTPAGVGVFRKP 259 (264)
Q Consensus 225 ~~~~lia~lS~~~tL~pGDvI~TGTp~Gvg~~~~p 259 (264)
+++++|+|+|+++||+|||+|+||||.|++..+..
T Consensus 371 ~v~~li~~ls~~~tL~aGDvI~TGTp~g~~~l~pG 405 (429)
T PRK15203 371 SVPFLIAYLSEFMTLNPGDMIATGTPKGLSDVVPG 405 (429)
T ss_pred CHHHHHHHHhcCCCcCCCCEEEeCCCCCCeECCCC
Confidence 99999999999999999999999999999876543
No 7
>PRK15203 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; Provisional
Probab=100.00 E-value=5.4e-49 Score=373.88 Aligned_cols=167 Identities=26% Similarity=0.399 Sum_probs=154.2
Q ss_pred CeEEEEecCcHHHHHHhC--------CCCCCCCEEEecCCCceecCCCeeecCCCCcCCceeeeEEEEEEcCCCCCCChh
Q psy5683 83 DKILCIALNYKDHCDEQN--------KTYPETPFFFNKFPSTIVGPFSEVTCPTNVTRYLDWEVELAVIIGKKTRDVKPH 154 (264)
Q Consensus 83 ~ki~~~g~Ny~~h~~e~~--------~~~p~~P~~F~K~~~s~~g~g~~I~~P~~~~~~~d~E~ELavVIgk~~~~i~~~ 154 (264)
+||+|+|+||++|++|++ .+.|+.|++|+|+++++++++++|.+|.. . ++|||+||++||||++++|+++
T Consensus 3 ~ki~~vg~Ny~~~~~~~~~~~~~~~~~~~p~~P~~F~Kp~~al~g~~~~i~~P~~-~-~~~~E~EL~vvIGk~~~~v~~~ 80 (429)
T PRK15203 3 GTIFAVALNHRSQLDAWQEAFQQSPYKAPPKTAVWFIKPRNTVIRCGEPIPFPQG-E-KVLSGATVALIVGKTATKVREE 80 (429)
T ss_pred ceEEEEeCchHHHHHhhhhhccccccCCCCCCCEEEecCcceeeCCCCcEECCCC-C-CceEEEEEEEEECCccCCCCHH
Confidence 589999999999999764 25689999999999999999999999987 4 7999999999999999999999
Q ss_pred hHhhhhh---------hhhcccccccCCCceeccccCCCcccCCcccccccCCCCCceEEEEEECCEEEEeccccccccC
Q psy5683 155 EAMESVF---------ESDWQKSSRNGGQWLFAKSLDTFCPLGPSVVMKEYLNDPHDVTLTCKVNGQVKQNASSSNMLHK 225 (264)
Q Consensus 155 ~A~~~i~---------ard~q~~~~~~~~~~~~K~~d~~~plGP~ivt~de~~d~~~l~i~~~vNGe~~q~~~t~~m~~~ 225 (264)
+|++||+ +||+|. +.+|.++|+||+|||+|||++. +++.+|+|+++||||++|+++|++|+|+
T Consensus 81 ~A~~~V~Gyti~nD~t~rd~q~----~~~~~~~K~~D~~~p~Gp~i~~----~~~~~l~i~~~vNGe~~Q~~~t~~Mi~~ 152 (429)
T PRK15203 81 DAAEYIAGYALANDVSLPEESF----YRPAIKAKCRDGFCPIGETVAL----SNVDNLTIYTEINGRPADHWNTADLQRN 152 (429)
T ss_pred HHhhheeEEEEEEEeechhhcc----cCCcccccCCCCCcccCCeEEC----CCccceEEEEEECCEEEecCCHHHcCCC
Confidence 9999999 788775 4689999999999999999864 3578999999999999999999999999
Q ss_pred hHHHHHHHHCCcccCCCCEEEcCCCCCCCCCCCC
Q psy5683 226 IPEIVSYLSEMITLLPGDVILTGTPAGVGVFRKP 259 (264)
Q Consensus 226 ~~~lia~lS~~~tL~pGDvI~TGTp~Gvg~~~~p 259 (264)
++++|+|+|++|||+|||||+||||+|+|..+.-
T Consensus 153 ~~~lis~lS~~~tL~pGDvI~TGTP~g~~~l~~G 186 (429)
T PRK15203 153 AAQLLSALSEFATLNPGDAILLGTPQARVEIQPG 186 (429)
T ss_pred HHHHHHHHhCCCCcCCCCEEEcCCCCCceECCCC
Confidence 9999999999999999999999999999876643
No 8
>TIGR01266 fum_ac_acetase fumarylacetoacetase. This enzyme catalyzes the final step in the breakdown of tyrosine or phenylalanine to fumarate and acetoacetate.
Probab=100.00 E-value=2.1e-46 Score=351.14 Aligned_cols=245 Identities=20% Similarity=0.254 Sum_probs=204.0
Q ss_pred EEEEeeCCCCCCCCceEEEEEccCCEEEECCCCC-------------CCCcccHHHHHhCCcHHHHHHHHHHhhc-----
Q psy5683 3 FVQYKPLNGNGNTPQRLGVQLERNGEIINLSSVD-------------SSMPNNLVQFLEGGPELLEKAKRMVSEC----- 64 (264)
Q Consensus 3 l~~~~~~~~~~~~~~~~gvv~~~~~~v~~l~~~~-------------~~~p~~l~~~l~~~~~~~~~~~~~~~~~----- 64 (264)
|..|++.++ +.+|+|+.++ +.|+||.... ....++|++|++.+...++++|+.++..
T Consensus 18 ~gvf~~~~~---~~pR~gv~ig--d~vlDL~~~~~~~~~~~~~~~~~~f~~~~Ln~f~alg~~~~~~~R~~l~~~l~~~~ 92 (415)
T TIGR01266 18 YGVFSTQAN---SSPRIGVAIG--DQILDLSVIAHLFTGPALSKHQHVFDQSTLNAFMALGRPAWKEARARLQNLLSASQ 92 (415)
T ss_pred eEEEECCCC---CCceeEEEEC--CEEEeHHHHHhhhcCccccccccccCCCCHHHHHhCCHHHHHHHHHHHHHHhhcCC
Confidence 567887544 5789999997 5799997531 1114689999999999999988766431
Q ss_pred -----------cccccCCCcEEcCCCccCCeEEEEecCcHHHHHHhCCC-------CC----CCCEEEecCCCceecCCC
Q psy5683 65 -----------KCMVKLSEVELLPPITRPDKILCIALNYKDHCDEQNKT-------YP----ETPFFFNKFPSTIVGPFS 122 (264)
Q Consensus 65 -----------~~~~~~~~v~ll~Pv~~p~ki~~~g~Ny~~h~~e~~~~-------~p----~~P~~F~K~~~s~~g~g~ 122 (264)
...+++++++++.|+. .+ -+....+|..|+++.|.- .+ ..|++|+|+++|++++|+
T Consensus 93 ~~~~~~~~~~~~~l~~~~~v~l~lP~~-i~-dytDf~~~~~Ha~n~g~~fr~~~~~l~p~~~~~Pv~y~g~~sSvv~sg~ 170 (415)
T TIGR01266 93 ARLRDNAALRQRALTPQAEATMHLPAQ-IG-DYTDFYSSIQHATNVGIMFRGKENALLPNWKHLPVGYHGRASSIVVSGT 170 (415)
T ss_pred ccccccccccccceeehhHceecCCcc-ch-hhhhhhchHHHHHHHHhhccCCCCCCCcccccCCcEeccCCceEEcCCC
Confidence 1247889999999884 21 256679999999987521 22 469999999999999999
Q ss_pred eeecCCC-------------CcCCceeeeEEEEEEcCC---CCCCChhhHhhhhh---------hhhcccccccCCCcee
Q psy5683 123 EVTCPTN-------------VTRYLDWEVELAVIIGKK---TRDVKPHEAMESVF---------ESDWQKSSRNGGQWLF 177 (264)
Q Consensus 123 ~I~~P~~-------------~~~~~d~E~ELavVIgk~---~~~i~~~~A~~~i~---------ard~q~~~~~~~~~~~ 177 (264)
+|.+|.+ .+..+|||+||++||||. |++|++++|++||+ +||+|.+++...+|++
T Consensus 171 ~I~rP~gq~~~~~~~~p~f~ps~~lD~E~ELavvIGk~~~~g~~vs~e~A~~~IfGy~l~ND~SARDiQ~wE~~plgpf~ 250 (415)
T TIGR01266 171 PLRRPMGQTLPDNAKPPVFGPCKLLDMELEMAFFVGPGNRLGEPIPISKAEEHIFGVVLMNDWSARDIQAWEYVPLGPFL 250 (415)
T ss_pred ceeCCCccccCCcccCCcccccCceEEEEEEEEEECcCcccCCcCCHHHHHhhheEEEEeeEcchhhhhhhhccccCccc
Confidence 9999974 267899999999999998 89999999999999 9999987666678899
Q ss_pred ccccCCCcccCCcccccccCCC---------C-------------CceEEEEEECCE------EEEeccccccccChHHH
Q psy5683 178 AKSLDTFCPLGPSVVMKEYLND---------P-------------HDVTLTCKVNGQ------VKQNASSSNMLHKIPEI 229 (264)
Q Consensus 178 ~K~~d~~~plGP~ivt~de~~d---------~-------------~~l~i~~~vNGe------~~q~~~t~~m~~~~~~l 229 (264)
||+||++ +||||||.|++++ + .+++++++|||+ ++|++|+++|+|+++||
T Consensus 251 ~KsF~ts--igPwIVT~daL~p~r~~~~~~dp~pl~yL~~~~~~~~~l~l~v~vnge~~~~~~~~q~~~~~~M~ws~~ql 328 (415)
T TIGR01266 251 AKSFGTT--ISPWVVPIDALEPFRVPNPKQDPKPLPYLCHDAPYTFDINLEVSLKGEGMSEPATICRSNFKHMYWTMLQQ 328 (415)
T ss_pred cccCCCC--CcCeEeccccccccccccccccccccccccccCCCcceeEEEEEEecCcCcccceEEcCCHHhcCcCHHHH
Confidence 9999995 9999999999841 1 267889999987 79999999999999999
Q ss_pred HHHHH-CCcccCCCCEEEcCCCCCCCCC
Q psy5683 230 VSYLS-EMITLLPGDVILTGTPAGVGVF 256 (264)
Q Consensus 230 ia~lS-~~~tL~pGDvI~TGTp~Gvg~~ 256 (264)
|+|+| ++++|+|||||+||||+|++..
T Consensus 329 Iah~S~~g~tL~pGDLi~TGTpsG~~~~ 356 (415)
T TIGR01266 329 LAHHSVNGCNLRPGDLLGSGTISGSEPG 356 (415)
T ss_pred HHHHhcCCcccCCCCEEEeCCCCCCccc
Confidence 99998 6899999999999999998754
No 9
>PRK12764 hypothetical protein; Provisional
Probab=100.00 E-value=5.3e-46 Score=359.12 Aligned_cols=181 Identities=33% Similarity=0.545 Sum_probs=166.4
Q ss_pred EcCCCccCCeEEEEecCcHHHHHHhCCCCCCCCEEEecCCCceecCCCeeecCCCCcCCceeeeEEEEEEcCCCCCCChh
Q psy5683 75 LLPPITRPDKILCIALNYKDHCDEQNKTYPETPFFFNKFPSTIVGPFSEVTCPTNVTRYLDWEVELAVIIGKKTRDVKPH 154 (264)
Q Consensus 75 ll~Pv~~p~ki~~~g~Ny~~h~~e~~~~~p~~P~~F~K~~~s~~g~g~~I~~P~~~~~~~d~E~ELavVIgk~~~~i~~~ 154 (264)
..+++.+|+||+|+|+||.+|++|++. .|+.|.+|+|+++++++++++|.+|.. +..++||+||||||||++++++++
T Consensus 14 ~~~~~~~p~kIi~vg~Ny~~ha~e~~~-~p~~P~~f~K~~~sl~~~g~~I~~p~~-~~~l~~E~ELavVIgr~~~~v~~e 91 (500)
T PRK12764 14 VAPLLARPGKVIAVHLNYPSRAAQRGR-TPAQPSYFLKPSSSLALSGGTVERPAG-TELLAFEGEIALVIGRPARRVSPE 91 (500)
T ss_pred ccCCCCCCCcEEEECCCCHHHHHHhCC-CCCCCEEEEeccceEeCCCCeEECCCC-CCceeEEEEEEEEECCcCCCCCHH
Confidence 344555789999999999999999875 489999999999999999999999998 789999999999999999999999
Q ss_pred hHhhhhh---------hhhcccccccCCCceeccccCCCcccCCcccccccCCCCCceEEEEEECCEEEEeccccccccC
Q psy5683 155 EAMESVF---------ESDWQKSSRNGGQWLFAKSLDTFCPLGPSVVMKEYLNDPHDVTLTCKVNGQVKQNASSSNMLHK 225 (264)
Q Consensus 155 ~A~~~i~---------ard~q~~~~~~~~~~~~K~~d~~~plGP~ivt~de~~d~~~l~i~~~vNGe~~q~~~t~~m~~~ 225 (264)
+|++||+ +||+|. ....+|.++|+||+|||+|||+++.+++ |+.+++|+++||||++|+++|++|+|+
T Consensus 92 ea~~~I~Gyt~~nDvt~rD~~~--~d~~~~~~~K~~Dg~~plGp~iv~~~~~-d~~~l~i~~~vNGe~~Q~g~t~dmi~~ 168 (500)
T PRK12764 92 DAWSHVAAVTAANDLGVYDLRY--ADKGSNLRSKGGDGFTPIGPALISARGV-DPAQLRVRTWVNGELVQDDTTEDLLFP 168 (500)
T ss_pred HHHhhheEEEEecceeeehhhh--hhcCCcccccccCccEecCCCccCcccc-CccceEEEEEECCEEEEeccHHHhcCC
Confidence 9999999 688776 2235789999999999999999999999 899999999999999999999999999
Q ss_pred hHHHHHHHHCCcccCCCCEEEcCCCCCCCCCCCCC
Q psy5683 226 IPEIVSYLSEMITLLPGDVILTGTPAGVGVFRKPI 260 (264)
Q Consensus 226 ~~~lia~lS~~~tL~pGDvI~TGTp~Gvg~~~~p~ 260 (264)
+++||+|||+++||+|||||+||||.|++..+...
T Consensus 169 v~~LI~~lS~~~tL~pGDvIlTGTp~g~~~l~pGD 203 (500)
T PRK12764 169 FAQLVADLSQLLTLEEGDVILTGTPAGSSVAAPGD 203 (500)
T ss_pred HHHHHHHHhcCCCcCCCCEEEeCCCCCCeecCCCC
Confidence 99999999999999999999999999998766443
No 10
>TIGR02305 HpaG-N-term 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, N-terminal subunit. This model represents one of two subunits/domains of the bifunctional isomerase/decarboxylase involved in 4-hydroxyphenylacetate degradation. In E. coli and some other species this enzyme is encoded by a single polypeptide containing both this domain and the closely related C-terminal domain (TIGR02303). In other species such as Pasteurella multocida these domains are found as two separate proteins (usually as tandem genes). Together, these domains carry out the decarboxylation of 5-oxopent-3-ene-1,2,5-tricarboxylic acid (OPET) to 2-hydroxy-2,4-diene-1,7-dioate (HHDD) and the subsequent isomerization to 2-oxohept-3-ene-1,7-dioate (OHED).
Probab=100.00 E-value=2.4e-44 Score=311.99 Aligned_cols=175 Identities=29% Similarity=0.461 Sum_probs=157.4
Q ss_pred CeEEEEecCcHHHHHHhCC--------CCCCCCEEEecCCCceecCCCeeecCCCCcCCceeeeEEEEEEcCCCCCCChh
Q psy5683 83 DKILCIALNYKDHCDEQNK--------TYPETPFFFNKFPSTIVGPFSEVTCPTNVTRYLDWEVELAVIIGKKTRDVKPH 154 (264)
Q Consensus 83 ~ki~~~g~Ny~~h~~e~~~--------~~p~~P~~F~K~~~s~~g~g~~I~~P~~~~~~~d~E~ELavVIgk~~~~i~~~ 154 (264)
+||+|+|+||.+|++|++. +.|+.|.+|+|++++++++|++|.+|.. ..+++||+|||+||||.+++++++
T Consensus 1 ~~i~~vg~ny~~h~~~~~~~~~~~~~~~~p~~P~~f~k~~~~~~~~g~~i~~p~~-~~~~~~E~ELa~vigr~~~~~~~~ 79 (205)
T TIGR02305 1 GTVFGVALNYREQLDRLQEAFQQAPYKAPPKTPVLYIKPRNTHNGCGQPIPLPAG-VEKLRSGATLALVVGRTACRVREE 79 (205)
T ss_pred CcEEEEeCcHHHHHHHhcccccccccCCCCCCCEEEEcCcceEeCCCCeEECCCC-CCCccEEEEEEEEECCCCCCCCHH
Confidence 4899999999999999985 4689999999999999999999999997 789999999999999999999999
Q ss_pred hHhhhhh----hhhcccc-cccCCCceeccccCCCcccCCcccccccCCCCCceEEEEEECCEEEEeccccccccChHHH
Q psy5683 155 EAMESVF----ESDWQKS-SRNGGQWLFAKSLDTFCPLGPSVVMKEYLNDPHDVTLTCKVNGQVKQNASSSNMLHKIPEI 229 (264)
Q Consensus 155 ~A~~~i~----ard~q~~-~~~~~~~~~~K~~d~~~plGP~ivt~de~~d~~~l~i~~~vNGe~~q~~~t~~m~~~~~~l 229 (264)
+|++||+ +.|+... .....+|.++|+||++|++||| ++.+++.|+.+++++++|||+.+|++++++|+|++.+|
T Consensus 80 ~a~~~v~g~~~~~dit~~~~~~~~~~~~~k~~dg~~~lGp~-v~~~~~~d~~~~~~~l~vng~~~~~g~~~~~~~~~~~l 158 (205)
T TIGR02305 80 EALDYVAGYALVNDVSLPEDSYYRPAIKAKCRDGFCPIGPE-VPLSAIGNPDELTIYTYINGKPAQSNNTSNLVRSAAQL 158 (205)
T ss_pred HHHHhhheeEEeeeeehhhhhccCcchhhcccCCccccCCc-ccHHHcCCccccEEEEEECCEEEEeeCHHHhCcCHHHH
Confidence 9999998 3444210 0123568999999999999999 78888889999999999999999999999999999999
Q ss_pred HHHHHCCcccCCCCEEEcCCCCCCCCCCCC
Q psy5683 230 VSYLSEMITLLPGDVILTGTPAGVGVFRKP 259 (264)
Q Consensus 230 ia~lS~~~tL~pGDvI~TGTp~Gvg~~~~p 259 (264)
|+|+|++++|+|||||+||||.|++..+..
T Consensus 159 i~~ls~~~~L~aGdvI~TGT~~g~~~l~~G 188 (205)
T TIGR02305 159 ISELSEFMTLNPGDVLLLGTPEARVEVGPG 188 (205)
T ss_pred HHHHhCCCCcCCCCEEEeCCCCCCeecCCC
Confidence 999999999999999999999998776543
No 11
>PF01557 FAA_hydrolase: Fumarylacetoacetate (FAA) hydrolase family Mutations in Swiss:P16930 cause inherited tyrosinemia type I.; InterPro: IPR002529 Fumarylacetoacetase (3.7.1.2 from EC; also known as fumarylacetoacetate hydrolase or FAH) catalyses the hydrolytic cleavage of a carbon-carbon bond in fumarylacetoacetate to yield fumarate and acetoacetate as the final step in phenylalanine and tyrosine degradation []. This is an essential metabolic function in humans, the lack of FAH causing type I tyrosinaemia, which is associated with liver and kidney abnormalities and neurological disorders [, ]. The enzyme mechanism involves a catalytic metal ion, a Glu/His catalytic dyad, and a charged oxyanion hole []. FAH folds into two domains: an N-terminal domain SH3-like beta-barrel, and a C-terminal with an unusual fold consisting of three layers of beta-sheet structures []. This entry represents the C-terminal domain of fumarylacetoacetase, as well as other domains that share a homologous sequence, including: 5-carboxymethyl-2-hydroxymuconate delta-isomerase (CHM isomerase; 5.3.3.10 from EC), which catalyses the conversion of 5-carboxymethyl-2-hydroxymuconate to 5-carboxy-2-oxohept-3-enedioate []. 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase (OPET decarboxylase; 4.1.1.68 from EC), which catalyses the conversion of 5-oxopent-3-ene-1,2,5-tricarboxylate to 2-oxohept-3-enedioate and carbon dioxide. Bifunctional enzyme HpcE (OPET decarboxylase 4.1.1.68 from EC/HHDD isomerase 5.3.3.10 from EC), which is a duplication consisting of a tandem repeat of two FAH C-terminal-like domains. This enzyme is responsible for the degradation of 4-hydroxyphenylacetate, a product of tyrosine and phenylalanine metabolism also released by lignin catabolism []. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1SAW_B 3LZK_B 3S52_B 2WQT_Q 1SV6_C 2DFU_B 1WZO_D 3QDF_A 1GTT_B 1I7O_C ....
Probab=100.00 E-value=7.5e-42 Score=298.50 Aligned_cols=178 Identities=43% Similarity=0.681 Sum_probs=156.9
Q ss_pred eEEEEecCcHHHHHHhC---CCCCC-----CCEEEecCCCceecCCCeeecCCCCcCCceeeeEEEEEEcCCCCCC-Chh
Q psy5683 84 KILCIALNYKDHCDEQN---KTYPE-----TPFFFNKFPSTIVGPFSEVTCPTNVTRYLDWEVELAVIIGKKTRDV-KPH 154 (264)
Q Consensus 84 ki~~~g~Ny~~h~~e~~---~~~p~-----~P~~F~K~~~s~~g~g~~I~~P~~~~~~~d~E~ELavVIgk~~~~i-~~~ 154 (264)
||+|+|+||.+|++|++ .+.|. .|.+|.|++++++++|++|.+|.. +..++||+|||+||||+++++ +++
T Consensus 1 ~v~~~~~n~~~~~~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~g~~i~~p~~-~~~~~~E~Ela~vig~~~~~~~~~~ 79 (218)
T PF01557_consen 1 KVVGVGLNYTSHAEEAGAGDVDEPDYGVPVEPVFFMKPPSSLVGSGAPIPLPRG-SRRLDYEAELAFVIGRPLRNVYTPE 79 (218)
T ss_dssp EEEEEESEBHHHHHHTTTTCSSTTSEECECSGEEEEEEGGGEEETTSEEEECTT-SSSEEEEEEEEEEESS-BSSTH-HH
T ss_pred CEEEEeEchHHHHHHhCcCCCCCCccccccCCeEEecCCceeecCCCceecCcc-ccccCcceEEEEEEecCCCCCCCHH
Confidence 79999999999999987 33444 899999999999999999999999 899999999999999999999 999
Q ss_pred hHhhhhh---------hhhcccccccCCCceeccccCCCcccCCcccccccCCCCCceEEEEEECCEEEEeccccccccC
Q psy5683 155 EAMESVF---------ESDWQKSSRNGGQWLFAKSLDTFCPLGPSVVMKEYLNDPHDVTLTCKVNGQVKQNASSSNMLHK 225 (264)
Q Consensus 155 ~A~~~i~---------ard~q~~~~~~~~~~~~K~~d~~~plGP~ivt~de~~d~~~l~i~~~vNGe~~q~~~t~~m~~~ 225 (264)
+|++||+ +||+|.....+.+|..+|++|+++++|||+++.+++.++.++++++++||+++|++++++|+|+
T Consensus 80 ea~~~i~g~~~~~d~~~r~~~~~~~~~~~~~~~k~~~~~~~~Gp~~v~~~~~~~~~~~~~~l~vnG~~~~~~~~~~~~~~ 159 (218)
T PF01557_consen 80 EALDAIAGYTPANDVTARDLQWRERPGLPWIADKSFDGSLVLGPWVVPPDELPDLRDLRLRLRVNGEVVQSGSTSDMLGD 159 (218)
T ss_dssp HHGGGEEEEEEEEEEEEHHHHHHHHHTHSSHHHHSSTTCEEEEEEEEEHSSHSGTTSEEEEEEETTEEEEEEEGGGBSSS
T ss_pred HHHHHhhEEeeecccchhhhhhhhhcccchhhccCcCcceeecccccccccccCcceEEEEEEECCEEEEeccchhHHhh
Confidence 9999999 7777763223458888999999999999999999998889999999999999999999999999
Q ss_pred hHHHHHHHHCCcccCCCCEEEcCCCCCCCCCCCCCCCC
Q psy5683 226 IPEIVSYLSEMITLLPGDVILTGTPAGVGVFRKPIESL 263 (264)
Q Consensus 226 ~~~lia~lS~~~tL~pGDvI~TGTp~Gvg~~~~p~~~L 263 (264)
+.++|+|+|+.++|+|||+|+||||.|++. +.++.||
T Consensus 160 ~~~ll~~ls~~~~L~aGdvI~TGt~~G~~~-~~~~~~l 196 (218)
T PF01557_consen 160 PAELLAWLSRGLTLRAGDVILTGTPTGVGA-RPPPVPL 196 (218)
T ss_dssp HHHHHHHHHTTS-B-TTEEEEEEESSTSEG-SSCCEEE
T ss_pred HHHHHHHHhCCCCCCcceEEEcCCcCCCCc-ccccccC
Confidence 999999999999999999999999999863 4444444
No 12
>TIGR03220 catechol_dmpE 2-oxopent-4-enoate hydratase. Members of this protein family are 2-oxopent-4-enoate hydratase, which is also called 2-hydroxypent-2,4-dienoate hydratase. It is closely related to another gene found in the same operon, 4-oxalocrotonate decarboxylase, with which it interacts closely.
Probab=99.90 E-value=9.5e-23 Score=182.34 Aligned_cols=164 Identities=20% Similarity=0.208 Sum_probs=125.9
Q ss_pred EEEecCcHHHHHHhCCCCCCCCEEEecCCCceecCCCeeecCCCCcCCceeeeEEEEEEcCCC--CCCChhhHhh---hh
Q psy5683 86 LCIALNYKDHCDEQNKTYPETPFFFNKFPSTIVGPFSEVTCPTNVTRYLDWEVELAVIIGKKT--RDVKPHEAME---SV 160 (264)
Q Consensus 86 ~~~g~Ny~~h~~e~~~~~p~~P~~F~K~~~s~~g~g~~I~~P~~~~~~~d~E~ELavVIgk~~--~~i~~~~A~~---~i 160 (264)
|=+|++...-.+.+|...|.+..+| .+.+..++.+|.++.. .++++|+||||||||++ ++++++++++ ||
T Consensus 55 ~K~g~ts~~~~~~~gv~~P~~g~l~---~~~~~~~g~~i~~~~~--~~~~vE~Elafvlg~~l~~~~~t~~ev~~ai~~v 129 (255)
T TIGR03220 55 KKIGVTSKAVMNMLGVYQPDFGYLL---DGMVYNEGEPIPTDTL--IQPKAEGEIAFVLKKDLMGPGVTAADVLAATECV 129 (255)
T ss_pred EEEecCCHHHHHHhCCCCCcEEEee---ccccccCCCeeccccC--ccceeeeEEEEEECCCCCCCCCCHHHHHHHHhhe
Confidence 4467777777788898777666666 5677788999999887 48999999999999996 5899997664 55
Q ss_pred h---------hhhcccccccCCCceeccccCC-CcccCCcccccccCCCCCceEEEEEECCEEEEeccccccccChHHHH
Q psy5683 161 F---------ESDWQKSSRNGGQWLFAKSLDT-FCPLGPSVVMKEYLNDPHDVTLTCKVNGQVKQNASSSNMLHKIPEIV 230 (264)
Q Consensus 161 ~---------ard~q~~~~~~~~~~~~K~~d~-~~plGP~ivt~de~~d~~~l~i~~~vNGe~~q~~~t~~m~~~~~~li 230 (264)
+ .|||+. ..+|..+|+.-. ...+|+.+...+.+ +...+.+++++||+++|++++++|++++.++|
T Consensus 130 ~~~~El~D~r~~~~~~----~~~~~~Ad~~~~~~~V~g~~~~~~~~~-~l~~~~~~l~vnG~~~~~g~~~~~lg~p~~~l 204 (255)
T TIGR03220 130 MPCFEIVDSRIRDWKI----KIQDTVADNASCGVFVLGDTRVDPRKL-DLALCGMVLEKNGEIVSTGAGAAALGSPVNAV 204 (255)
T ss_pred eeeEEEcccccccCCC----CccceeeecCCcceEEECCCcCCcccc-ChhhCceEEEECCEEEeecchhhccCCHHHHH
Confidence 4 666654 347888887321 12334433222233 34555668999999999999999999999999
Q ss_pred HHHHC-----CcccCCCCEEEcCCCCCCCCCCCC
Q psy5683 231 SYLSE-----MITLLPGDVILTGTPAGVGVFRKP 259 (264)
Q Consensus 231 a~lS~-----~~tL~pGDvI~TGTp~Gvg~~~~p 259 (264)
+|||+ +++|+|||+|+||||.|++..+..
T Consensus 205 ~~L~~~l~~~g~~L~aGdiV~TGt~~g~~~v~~G 238 (255)
T TIGR03220 205 AWLANTLGRLGIPLKAGEVILSGSLAALVPVKAG 238 (255)
T ss_pred HHHHHHHHHcCCCCCCCCEEECCCCCCCeeCCCC
Confidence 99997 889999999999999999876543
No 13
>PRK11342 mhpD 2-keto-4-pentenoate hydratase; Provisional
Probab=99.86 E-value=2.2e-21 Score=174.22 Aligned_cols=169 Identities=15% Similarity=0.096 Sum_probs=132.3
Q ss_pred EEEEecCcHHHHHHhCCCCCCCCEEEecCCCceecCCCeeecCCCCcCCceeeeEEEEEEcCCCC--CCChhhHhhhhh-
Q psy5683 85 ILCIALNYKDHCDEQNKTYPETPFFFNKFPSTIVGPFSEVTCPTNVTRYLDWEVELAVIIGKKTR--DVKPHEAMESVF- 161 (264)
Q Consensus 85 i~~~g~Ny~~h~~e~~~~~p~~P~~F~K~~~s~~g~g~~I~~P~~~~~~~d~E~ELavVIgk~~~--~i~~~~A~~~i~- 161 (264)
=|.+|++.....+.+|...|....+|. +.+..++..+.+... .+..+|+||||++||+.. ++++++++++|.
T Consensus 58 G~K~G~ts~~~~~~~gv~~P~~g~l~~---~~~~~~g~~~~~~~~--~~~~iE~Eiaf~l~~dl~~~~~t~~ev~~ai~~ 132 (262)
T PRK11342 58 GRKVGLTHPKVQQQLGVDQPDFGTLFA---DMCYGDNEIIPFSRV--LQPRIEAEIALVLNRDLPATDITFDELYNAIEW 132 (262)
T ss_pred EEEecCCCHHHHHHhCCCCCCcccccc---hhhcCCCCeeccccc--CCcceeeEEEEEECCCCCCCCCCHHHHHHhhce
Confidence 377899999999999998888888884 567788888888775 578999999999999875 689999888877
Q ss_pred ---hhhcccccc----cCCCceeccccC-CCcccCCcccccccCCCCCceEEEEEECCEEEEeccccccccChHHHHHHH
Q psy5683 162 ---ESDWQKSSR----NGGQWLFAKSLD-TFCPLGPSVVMKEYLNDPHDVTLTCKVNGQVKQNASSSNMLHKIPEIVSYL 233 (264)
Q Consensus 162 ---ard~q~~~~----~~~~~~~~K~~d-~~~plGP~ivt~de~~d~~~l~i~~~vNGe~~q~~~t~~m~~~~~~lia~l 233 (264)
+-++-.++. .......+.+.. +...+|+.+...+++ |+.++.+++++||+++|++++++|++++.++|+||
T Consensus 133 v~paiEivdsr~~~~~~~~~~~iAD~~~~~~~VlG~~~~~~~~~-d~~~~~~~l~vng~~~q~g~~~~~lg~p~~~l~~L 211 (262)
T PRK11342 133 VLPALEVVGSRIRDWSIQFVDTVADNASCGVYVIGGPAQRPAGL-DLKNCAMKMTRNNEEVSSGRGSECLGHPLNAAVWL 211 (262)
T ss_pred EeeeEEecCCcccCCCCchhheeecccccceEEECCCcCCcccC-ChhhCEEEEEECCEEEEEEcHHHhccCHHHHHHHH
Confidence 222221100 112223343332 234788877767766 78999999999999999999999999999999999
Q ss_pred HCC-----cccCCCCEEEcCCCCCCCCCCCC
Q psy5683 234 SEM-----ITLLPGDVILTGTPAGVGVFRKP 259 (264)
Q Consensus 234 S~~-----~tL~pGDvI~TGTp~Gvg~~~~p 259 (264)
++. ++|+|||||+||||.|+......
T Consensus 212 ~~~l~~~g~~L~aGdvV~TGt~~~~~~l~~G 242 (262)
T PRK11342 212 ARKMASLGEPLRAGDIILTGALGPMVAVNAG 242 (262)
T ss_pred HHHHHHcCCCcCCCCEEEcCCCCCCeeCCCC
Confidence 875 69999999999999988766544
No 14
>KOG2843|consensus
Probab=99.75 E-value=3.2e-18 Score=151.41 Aligned_cols=233 Identities=21% Similarity=0.284 Sum_probs=166.9
Q ss_pred CCceEEEEEccCCEEEECCCCC-----C--------CCcccHHHHHhCCcHHHHHHHHHHhh----c-c-----------
Q psy5683 15 TPQRLGVQLERNGEIINLSSVD-----S--------SMPNNLVQFLEGGPELLEKAKRMVSE----C-K----------- 65 (264)
Q Consensus 15 ~~~~~gvv~~~~~~v~~l~~~~-----~--------~~p~~l~~~l~~~~~~~~~~~~~~~~----~-~----------- 65 (264)
.+.++|+.+++ .|.++.... + .-..+|++|+..+.+++..+|..++. + .
T Consensus 28 ~~~~igvaIgd--qIl~l~~i~~lf~gp~l~~hQdvf~q~TLN~fMgL~~~AW~eaR~~~Q~LLs~~~a~Lrdn~~Lr~~ 105 (420)
T KOG2843|consen 28 SSRHIGVAIGD--QILNLAEIANLFDGPQLKAHQDVFKQSTLNAFMGLDFEAWDEARSQTQKLLSKGCAELRDNVDLRAV 105 (420)
T ss_pred CCCcceeehhH--HHHHHHHHHHhhcCcchHHHHHHhhhhhHHHHhCCCHHHHHHHHHHHHHHhhcchhhhccccceeee
Confidence 46788988774 566654321 1 11358999998888888877654321 1 0
Q ss_pred ccccCCCcEEcCCCccCCeEEEEecCcHHHHHHhCC-----C---CC---CCCEEEecCCCceecCCCeeecCCC-----
Q psy5683 66 CMVKLSEVELLPPITRPDKILCIALNYKDHCDEQNK-----T---YP---ETPFFFNKFPSTIVGPFSEVTCPTN----- 129 (264)
Q Consensus 66 ~~~~~~~v~ll~Pv~~p~ki~~~g~Ny~~h~~e~~~-----~---~p---~~P~~F~K~~~s~~g~g~~I~~P~~----- 129 (264)
..++.+++++.-|-... ..-.. .....|+.+.|. + -| .-|+-|....++++-.|.||+.|-+
T Consensus 106 a~v~Qs~atmHLPAqIG-DYTDF-YSSihHATNVGIMFRgkeNALMPNW~hLPVGYHGRASSvVVSGTpirRP~GQtkpd 183 (420)
T KOG2843|consen 106 AIVPQSEATMHLPAQIG-DYTDF-YSSIHHATNVGIMFRGKENALMPNWRHLPVGYHGRASSVVVSGTPIRRPLGQTKPD 183 (420)
T ss_pred eeeccccceeccchhhc-chhhh-hhhhhhccceeEEEeccccccCCccccccccccCceeeEEEcCCcccCcccCCCCC
Confidence 12445556665554311 11000 112236655432 1 12 3589999999999999999999854
Q ss_pred --------CcCCceeeeEEEEEEcCC----CCCCChhhHhhhhh---------hhhcccccccCCCceeccccCCCcccC
Q psy5683 130 --------VTRYLDWEVELAVIIGKK----TRDVKPHEAMESVF---------ESDWQKSSRNGGQWLFAKSLDTFCPLG 188 (264)
Q Consensus 130 --------~~~~~d~E~ELavVIgk~----~~~i~~~~A~~~i~---------ard~q~~~~~~~~~~~~K~~d~~~plG 188 (264)
.++-+|+|.|+|+.||.+ |..|+.++|+++|| +||+|+|++-....+.+|||-+ .++
T Consensus 184 dae~PvfGacKLlDfELEMAFFvGgpgN~LGepipi~kA~~~iFG~vLMNDWSARDIQkWEYVPLGPFlaKsfgT--TvS 261 (420)
T KOG2843|consen 184 DAEKPVFGACKLLDFELEMAFFVGGPGNQLGEPIPIDKAWKNIFGFVLMNDWSARDIQKWEYVPLGPFLAKSFGT--TVS 261 (420)
T ss_pred CCCCCcccchhhccceeeeeeEecCCccccCCccchhhhhhheeeEEEecccchhhcccceeecccchhhhhccc--ccc
Confidence 356789999999999955 56899999999999 9999999888888899999976 799
Q ss_pred CcccccccCC--------------------CCCceEEEEEEC----C----EEEEeccccccccChHHHHHHHH-CCccc
Q psy5683 189 PSVVMKEYLN--------------------DPHDVTLTCKVN----G----QVKQNASSSNMLHKIPEIVSYLS-EMITL 239 (264)
Q Consensus 189 P~ivt~de~~--------------------d~~~l~i~~~vN----G----e~~q~~~t~~m~~~~~~lia~lS-~~~tL 239 (264)
||+|+.+.+. +|-++.|.+.|| | .++..+|.+.|.|.+-+.|+|.+ .++.|
T Consensus 262 PWVVp~~AL~Pf~v~Np~QdP~plpYL~hd~PftfDINL~Vslkpeg~~~~a~icKsNFKhlYWT~lQQlaHHtVnGCNL 341 (420)
T KOG2843|consen 262 PWVVPTAALKPFVVDNPPQDPEPLPYLRHDIPFTFDINLEVSLKPEGQNEDALICKSNFKHLYWTPLQQLAHHTVNGCNL 341 (420)
T ss_pred cceeeHhhcCccccCCCCCCCCCCcccccCCCceeeeeeEEEeccCCccccceeecccchhhhhhHHHHhhhcccccccC
Confidence 9999876652 123445555542 2 36788999999999999999986 68999
Q ss_pred CCCCEEEcCCCCCC
Q psy5683 240 LPGDVILTGTPAGV 253 (264)
Q Consensus 240 ~pGDvI~TGTp~Gv 253 (264)
+|||++.+||.+|.
T Consensus 342 RpGDLlaSGTiSGp 355 (420)
T KOG2843|consen 342 RPGDLLASGTISGP 355 (420)
T ss_pred CccceeccccccCC
Confidence 99999999999875
No 15
>TIGR02312 HpaH 2-oxo-hepta-3-ene-1,7-dioic acid hydratase. This model represents the enzyme which hydrates the double bond of 2-oxo-hepta-3-ene-1,7-dioic acid to form 4-hydroxy-2-oxo-heptane-1,7-dioic acid in the catabolism of 4-hydroxyphenylacetic acid. The gene for this enzyme is generally found adjacent to other genes of this pathway in an apparent operon.
Probab=99.71 E-value=8.6e-17 Score=144.82 Aligned_cols=165 Identities=21% Similarity=0.196 Sum_probs=125.9
Q ss_pred EEEecCcHHHHHHhCCCCCCCCEEEecCCCceecCCCeeecCCCCcCCceeeeEEEEEEcCCC--CCCChhhHhhhhh--
Q psy5683 86 LCIALNYKDHCDEQNKTYPETPFFFNKFPSTIVGPFSEVTCPTNVTRYLDWEVELAVIIGKKT--RDVKPHEAMESVF-- 161 (264)
Q Consensus 86 ~~~g~Ny~~h~~e~~~~~p~~P~~F~K~~~s~~g~g~~I~~P~~~~~~~d~E~ELavVIgk~~--~~i~~~~A~~~i~-- 161 (264)
|=+|++..+-.+.++...|.+..+| .+.+..++..+..... .+.-+|+||||++||+. ...+.++++++|.
T Consensus 60 ~KvG~ts~a~q~~~gv~~P~~g~l~---~~~~~~~g~~~~~~~~--~~p~vE~Eiaf~l~~~l~~~~~t~~ev~~ai~~v 134 (267)
T TIGR02312 60 HKIGLTSRAMQQASNIDEPDYGVLL---DDMFFEDGSTIPADRF--IQPRVEVELAFVLKKDLEGPNVTIFDVLNATDYV 134 (267)
T ss_pred EEEecCCHHHHHHcCCCCCeeEEec---CccccCCCCeeccccc--cccccceEEEEEECCCCCCCCCCHHHHHHHhheE
Confidence 4467787777777888766666666 5777788888887544 57899999999999987 4789999999886
Q ss_pred --hhhccccc------ccCCCceeccccCCC--------cccCCcccccccCCCCCceEEEEEECCEEEEeccccccccC
Q psy5683 162 --ESDWQKSS------RNGGQWLFAKSLDTF--------CPLGPSVVMKEYLNDPHDVTLTCKVNGQVKQNASSSNMLHK 225 (264)
Q Consensus 162 --ard~q~~~------~~~~~~~~~K~~d~~--------~plGP~ivt~de~~d~~~l~i~~~vNGe~~q~~~t~~m~~~ 225 (264)
+-++-.++ ..+..| |.+|.. ..+||.++.++++ |+.++.+++++||+++++|++++|+.+
T Consensus 135 ~paiEi~dsr~~~~~~~~~~~~---~~~d~iADn~~~~~~v~G~~~~~~~~~-dl~~~~~~l~~nG~~~~~g~~~~~lg~ 210 (267)
T TIGR02312 135 VPALEIIDARIERVDPETGATR---KVFDTISDNAANAGIVLGGRPVRPDAL-DLRWVGAILYRNGVVEETGLAAGVLNH 210 (267)
T ss_pred EeeEEEeeccccccccccCCcc---ccccEecCCccceEEEECCCCCCcccc-ChhhcccEEEECCEEEEEechhhhcCC
Confidence 23332210 011112 334433 3789877766766 788899999999999999999999999
Q ss_pred hHHHHHHHHC-----CcccCCCCEEEcCCCCCCCCCCCC
Q psy5683 226 IPEIVSYLSE-----MITLLPGDVILTGTPAGVGVFRKP 259 (264)
Q Consensus 226 ~~~lia~lS~-----~~tL~pGDvI~TGTp~Gvg~~~~p 259 (264)
+.+.+.||++ +.+|++||+|+|||+.|+......
T Consensus 211 P~~al~wL~~~l~~~G~~L~aGdiV~TGs~~~~~~v~~G 249 (267)
T TIGR02312 211 PANGVAWLANKLAPWGETLEAGQVVLAGSFTRPVAARSG 249 (267)
T ss_pred HHHHHHHHHHHHHHcCCCCCCCCEEECCCCCCceecCCC
Confidence 9999999976 459999999999999988766543
No 16
>COG3971 2-keto-4-pentenoate hydratase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.46 E-value=4.2e-13 Score=118.16 Aligned_cols=160 Identities=19% Similarity=0.223 Sum_probs=131.8
Q ss_pred EecCcHHHHHHhCCCCCCCCEEEecCCCceecCCCeeecCCCCcCCceeeeEEEEEEcCCCC--CCChhhHhhhhh----
Q psy5683 88 IALNYKDHCDEQNKTYPETPFFFNKFPSTIVGPFSEVTCPTNVTRYLDWEVELAVIIGKKTR--DVKPHEAMESVF---- 161 (264)
Q Consensus 88 ~g~Ny~~h~~e~~~~~p~~P~~F~K~~~s~~g~g~~I~~P~~~~~~~d~E~ELavVIgk~~~--~i~~~~A~~~i~---- 161 (264)
+|++.+.|.+.++...|++-.+| .......|.+|+.+.+ ....+|+||++|++|+.. ++|..|+++||.
T Consensus 62 vglts~a~q~~~~v~epd~G~lf---d~m~f~eg~~ip~~r~--~~prvE~EiafvL~kdlpa~~~T~~d~l~a~~~v~p 136 (264)
T COG3971 62 VGLTSPAMQQQLGVDEPDYGTLF---DDMAFNEGADIPFSRF--IQPRVEVEIAFVLKKDLPAPDCTVADVLNATDYVLP 136 (264)
T ss_pred eccCCHHHHHHcCCCCcchhhhh---HhHHhhcCCCCCcccc--cceeeeeeEEEEecCCCCCCCCCHHHHHHHHHhhhh
Confidence 79999999999999989888888 5778889999999887 466999999999999964 899999998887
Q ss_pred ---------hhhcccccccCCCceeccccC-CCcccCCcccccccCCCCCceEEEEEECCEEEEeccccccccChHHHHH
Q psy5683 162 ---------ESDWQKSSRNGGQWLFAKSLD-TFCPLGPSVVMKEYLNDPHDVTLTCKVNGQVKQNASSSNMLHKIPEIVS 231 (264)
Q Consensus 162 ---------ard~q~~~~~~~~~~~~K~~d-~~~plGP~ivt~de~~d~~~l~i~~~vNGe~~q~~~t~~m~~~~~~lia 231 (264)
.+|+|. ....+.+.|.- ....|||-.+.++++ |..++..+++.||++++.|..+..+-+|..-+.
T Consensus 137 alElidsri~~d~~~----~~~dtiaDnaan~G~ViG~~~~~~~~l-d~~~~~~~l~rng~~~e~g~~aavLghP~~a~~ 211 (264)
T COG3971 137 ALELIDSRIKQDWQV----KFPDTIADNAANAGFVIGGRAVKPDDL-DLRNVGATLYRNGVEEETGVGAAVLGHPAAALA 211 (264)
T ss_pred hhhhccchhhhCCCC----CcceEEecccccCceEECCCCCCchhh-hhhhccceeeecCEEEEeeechhhcCCcHHHHH
Confidence 124443 22344554433 225899878888888 889999999999999999999999999999999
Q ss_pred HHHC-----CcccCCCCEEEcCCCCCCCCCC
Q psy5683 232 YLSE-----MITLLPGDVILTGTPAGVGVFR 257 (264)
Q Consensus 232 ~lS~-----~~tL~pGDvI~TGTp~Gvg~~~ 257 (264)
|+.+ +.+|+.||||+||+-.+.-..+
T Consensus 212 wLAn~~a~~G~~Lk~G~IVl~Gs~t~~v~~~ 242 (264)
T COG3971 212 WLANKLAAYGVPLKAGDIVLTGSFTGPVPAR 242 (264)
T ss_pred HHHHHHHHcCCCcccCcEEecCccCccccCC
Confidence 9874 7999999999999976654443
No 17
>TIGR03218 catechol_dmpH 4-oxalocrotonate decarboxylase. Members of this protein family are 4-oxalocrotonate decarboxylase. Note that this protein, as characterized (indirectly) in Pseudomonas sp. strain CF600, was inactive except when coexpressed with DmpE, 2-oxopent-4-enoate hydratase, a homologous protein from the same operon. Both of these enzymes are active in the degradation of catechol, a common intermediate in the degradation of aromatic compounds such as benzoate, toluene, phenol, dimethylphenol (dmp), salicylate, etc.
Probab=99.39 E-value=8e-12 Score=112.41 Aligned_cols=165 Identities=14% Similarity=0.072 Sum_probs=120.1
Q ss_pred EEecCcHHHHHHhCCCCCCCCEEEecCCCceecCCCeeecCCCCcCCceeeeEEEEEEcCCC--CCCChhhHhhhhh---
Q psy5683 87 CIALNYKDHCDEQNKTYPETPFFFNKFPSTIVGPFSEVTCPTNVTRYLDWEVELAVIIGKKT--RDVKPHEAMESVF--- 161 (264)
Q Consensus 87 ~~g~Ny~~h~~e~~~~~p~~P~~F~K~~~s~~g~g~~I~~P~~~~~~~d~E~ELavVIgk~~--~~i~~~~A~~~i~--- 161 (264)
=+|++...-.+.++...|.+..+| .+.+..++..+..... .+.-.|+||||++|++. ...+.++++++|.
T Consensus 64 Kvg~ts~~~q~~~gv~~P~~g~l~---~~~~~~~g~~~~~~~~--~~p~vE~Eiaf~l~~~l~~~~~t~~ev~~ai~~v~ 138 (263)
T TIGR03218 64 KAGLTSWAKMKQMGVETPVFGFLV---DYFSVPDGGEIKTSEL--IHPKVEAEIAFVTKAPLKGPGCHIGDVLAATDFVM 138 (263)
T ss_pred EEecCCHHHHHhcCCCCCeeeeec---ccccccCCCeeccccc--CcceeeeEEEEEECCCCCCCCCCHHHHHHhhcEEE
Confidence 356666666666787766666666 4666677888777665 56899999999999986 5678888887776
Q ss_pred -hhhccccccc----CCCceeccccC-CCcccCCcccccccCCCCCceEEEEEECCEEEEeccccccccChHHHHHHHH-
Q psy5683 162 -ESDWQKSSRN----GGQWLFAKSLD-TFCPLGPSVVMKEYLNDPHDVTLTCKVNGQVKQNASSSNMLHKIPEIVSYLS- 234 (264)
Q Consensus 162 -ard~q~~~~~----~~~~~~~K~~d-~~~plGP~ivt~de~~d~~~l~i~~~vNGe~~q~~~t~~m~~~~~~lia~lS- 234 (264)
+-++-.++.. +.....+.+.- +...+||+....+.+ |+.++.+++++||++++.|+.++..-++.+.+.||.
T Consensus 139 paiEivdsR~~~~~~~~~~~iADn~~~~~~vlG~~~~~~~~~-dl~~~~~~l~~~g~~v~~g~g~~~lG~P~~al~wL~~ 217 (263)
T TIGR03218 139 PAVEVIDSRYRDFKFDLKSVIADNTSSARFVTGGRAANVEDL-DLRTLGVVMEKNGEVVAMGAGAAVLGHPAAAVAMLAN 217 (263)
T ss_pred eeEEeccCcccCCCCChhheeeeccccceEEECCCCCCcccc-CHhhCcEEEEECCEEEEeecccccCCCHHHHHHHHHH
Confidence 2222221111 12223333322 334789987766655 788999999999999999999999999999999986
Q ss_pred ----CCcccCCCCEEEcCCCCCCCCCC
Q psy5683 235 ----EMITLLPGDVILTGTPAGVGVFR 257 (264)
Q Consensus 235 ----~~~tL~pGDvI~TGTp~Gvg~~~ 257 (264)
++..|++||+|+|||..|+=...
T Consensus 218 ~l~~~G~~L~aG~iV~tGs~t~~~~v~ 244 (263)
T TIGR03218 218 HLAERGEEIPAGSFIMSGGITEAVAVA 244 (263)
T ss_pred HHHHcCCCCCCCCEEECCcCcCceecC
Confidence 46799999999999998764433
No 18
>COG3970 Fumarylacetoacetate (FAA) hydrolase family protein [General function prediction only]
Probab=99.35 E-value=3.6e-12 Score=114.10 Aligned_cols=141 Identities=20% Similarity=0.220 Sum_probs=113.2
Q ss_pred CCEEEecC-CCceecCCCeeecCCCCcCCceeeeEEEEEEcCCCCCCChhhHhhhhhhhhcccccccCCCceeccccCCC
Q psy5683 106 TPFFFNKF-PSTIVGPFSEVTCPTNVTRYLDWEVELAVIIGKKTRDVKPHEAMESVFESDWQKSSRNGGQWLFAKSLDTF 184 (264)
Q Consensus 106 ~P~~F~K~-~~s~~g~g~~I~~P~~~~~~~d~E~ELavVIgk~~~~i~~~~A~~~i~ard~q~~~~~~~~~~~~K~~d~~ 184 (264)
.+.+|+|. +.+-+|+|+.|-+.+. +.+-..|+|+++++...|+-+... -.+-|-+||+.. +..+...++|...++
T Consensus 168 daEIFtKaqpmssVG~Ga~Igv~~~-S~WnnPEPEvvl~~dS~G~I~GaT-lgnDVnlRD~Eg--rsaLlL~kaKdnnas 243 (379)
T COG3970 168 DAEIFTKAQPMSSVGHGAQIGVRPD-SEWNNPEPEVVLAVDSSGKIVGAT-LGNDVNLRDFEG--RSALLLSKAKDNNAS 243 (379)
T ss_pred ChhheecCCccccccccceeeeccc-cccCCCCCeEEEEEcCCCcEEeee-ecCccccccccc--ccchhcccccccCcc
Confidence 37889996 6778999999999998 999999999999999988754211 122333899987 566667788888899
Q ss_pred cccCCcccccccCCCCCceE---EEEEECCEEE----EeccccccccChHHHHHH-HHCCcccCCCCEEEcCCC
Q psy5683 185 CPLGPSVVMKEYLNDPHDVT---LTCKVNGQVK----QNASSSNMLHKIPEIVSY-LSEMITLLPGDVILTGTP 250 (264)
Q Consensus 185 ~plGP~ivt~de~~d~~~l~---i~~~vNGe~~----q~~~t~~m~~~~~~lia~-lS~~~tL~pGDvI~TGTp 250 (264)
|.+||+|++.||.-.+++++ +++.|.||-. ...|++.|..++.+++.. +-+......|-++++||.
T Consensus 244 CaiGPfIrlfDe~f~~~dv~~a~vtLkv~gedgf~l~G~snm~~isR~p~~l~~Q~l~~~hqyPDG~~lflGTm 317 (379)
T COG3970 244 CAIGPFIRLFDETFTIDDVKSAEVTLKVTGEDGFFLEGSSNMAEISRSPEELVIQALNRDHQYPDGFALFLGTM 317 (379)
T ss_pred ccccceEEeecCCCChhhhhhceEEEEEEccCceEEeccccHHhhccCHHHHHHHHhccCCCCCCceeEEeeee
Confidence 99999999999865555555 9999988754 457889999988888765 567888999999999996
No 19
>COG3802 GguC Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.26 E-value=4.8e-11 Score=104.66 Aligned_cols=229 Identities=21% Similarity=0.273 Sum_probs=147.8
Q ss_pred CeEEEEeeCCCCCCCCceEEEEEccCCEEEECCCCCCCCcccHHHHHhCCcHHHHHHHHHHhhccccc----cCCCcEEc
Q psy5683 1 MRFVQYKPLNGNGNTPQRLGVQLERNGEIINLSSVDSSMPNNLVQFLEGGPELLEKAKRMVSECKCMV----KLSEVELL 76 (264)
Q Consensus 1 Mrl~~~~~~~~~~~~~~~~gvv~~~~~~v~~l~~~~~~~p~~l~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~v~ll 76 (264)
|||++|+.+. |+.|++++.+ ++....+......+ .--.+.|+.+. .+..+.+.-.. +..+ .+.+-|+|
T Consensus 3 mrl~Q~~~~~----g~~rv~~~~~-~~~~~~v~ga~svy-eLa~~Ai~~~~-sl~~~v~~~g~-ge~vD~daal~~GRvl 74 (333)
T COG3802 3 MRLSQFRDPD----GSRRVAVRED-GGHARVVRGARSVY-ELAMAAIRAGM-SLADLVEARGL-GETVDLDAALAEGRVL 74 (333)
T ss_pred eeeEEEecCC----CceEEEEEcC-CCceeeecchHHHH-HHHHHHHHcCC-cHHHHHhhccC-ccccCHHHHHhcCccc
Confidence 8999999876 5799999864 56777777642111 11112233332 12221111001 1122 35678999
Q ss_pred CCCccCCe----EEEEecCcHHHH--------HH----------------hC----CCCC----CCCEEEecCC-Cceec
Q psy5683 77 PPITRPDK----ILCIALNYKDHC--------DE----------------QN----KTYP----ETPFFFNKFP-STIVG 119 (264)
Q Consensus 77 ~Pv~~p~k----i~~~g~Ny~~h~--------~e----------------~~----~~~p----~~P~~F~K~~-~s~~g 119 (264)
+||.+|.. +-+.|++....+ +. || ++.+ -+|.+|+|.. +.++.
T Consensus 75 ~Pi~HpdpAhl~~TGTGLTHlGSAatRd~MHk~~~~~~ee~lTDSmkmFrmGlegGKP~aGe~GvQPEWFyKG~G~~~va 154 (333)
T COG3802 75 APIDHPDPAHLLVTGTGLTHLGSAATRDQMHKKTQGAGEESLTDSMKMFRMGLEGGKPKAGEIGVQPEWFYKGDGTVAVA 154 (333)
T ss_pred CCCCCCCcceEEEeccCcccccchhhHHHHHHHhhcccccccchHHHHHHHhccCCCCCCCccCcCcceEEeCCCcEEec
Confidence 99999853 556777764322 11 11 1111 3799999985 77889
Q ss_pred CCCeeecCCCCcCCceeeeEEE--EEEcCCCCCCChhhHhhhhhhhhcccc-cccCCCceeccccCCCcccCCccccccc
Q psy5683 120 PFSEVTCPTNVTRYLDWEVELA--VIIGKKTRDVKPHEAMESVFESDWQKS-SRNGGQWLFAKSLDTFCPLGPSVVMKEY 196 (264)
Q Consensus 120 ~g~~I~~P~~~~~~~d~E~ELa--vVIgk~~~~i~~~~A~~~i~ard~q~~-~~~~~~~~~~K~~d~~~plGP~ivt~de 196 (264)
+|.+++.|.+ ...--.|+||+ .+||.++.......|+. +++..- .....+.+++.|.-..|++||-|..-+
T Consensus 155 pGa~l~sPaF-AedggEEpEiaGiYlig~dg~p~RlGfal~----NEfSDHvtEr~NYL~LAHSKLR~as~GPEl~vG~- 228 (333)
T COG3802 155 PGAPLPSPAF-AEDGGEEPEIAGIYLIGDDGTPYRLGFALA----NEFSDHVTERVNYLYLAHSKLRNASFGPELLVGA- 228 (333)
T ss_pred CCCCCCChhh-hhccCCCceeeEEEEECCCCceeEEeeeec----chhhhhhhhccceEEeehhhhhccccCcceeecc-
Confidence 9999999999 88888999998 48999987554333332 222210 123456678888888999999997654
Q ss_pred CCCCCceEEEEE--ECCEEEEe----ccccccccChHHHHHHHHCC-cccCCCCEE
Q psy5683 197 LNDPHDVTLTCK--VNGQVKQN----ASSSNMLHKIPEIVSYLSEM-ITLLPGDVI 245 (264)
Q Consensus 197 ~~d~~~l~i~~~--vNGe~~q~----~~t~~m~~~~~~lia~lS~~-~tL~pGDvI 245 (264)
+ |.+++-..+ .+|++..+ +--++|.++++.|-.|.-++ +-.+||||-
T Consensus 229 l--P~~vrG~SRI~Rdg~viwek~FlSGE~nMsHs~aNLEhhHFkY~lfrrpGDvH 282 (333)
T COG3802 229 L--PEDVRGVSRILRDGEVIWEKPFLSGEANMSHSIANLEHHHFKYALFRRPGDVH 282 (333)
T ss_pred C--chhhcCceeeecCCEEEEecccccCccchhhhhhhhhhhhhhhhhhcCCCceE
Confidence 3 455554444 48988765 34479999999999988775 778999974
No 20
>PF10370 DUF2437: Domain of unknown function (DUF2437); InterPro: IPR018833 This entry represents the N-terminal 50 amino acids of a group of bacterial proteins often annotated as fumarylacetoacetate hydrolase-containing enzymes. In most cases these proteins also contain IPR002529 from INTERPRO, which is found towards the C terminus. ; PDB: 3RR6_A 2DFU_D 3QDF_A.
Probab=97.85 E-value=1.3e-05 Score=54.15 Aligned_cols=50 Identities=28% Similarity=0.339 Sum_probs=34.6
Q ss_pred CeEEEEeeCCCCCCCCceEEEEEccCCEEEECCCCCCCCcccHHHHHhCCcHHHHHHHHHHhhccccccCCCcEEcCC
Q psy5683 1 MRFVQYKPLNGNGNTPQRLGVQLERNGEIINLSSVDSSMPNNLVQFLEGGPELLEKAKRMVSECKCMVKLSEVELLPP 78 (264)
Q Consensus 1 Mrl~~~~~~~~~~~~~~~~gvv~~~~~~v~~l~~~~~~~p~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~ll~P 78 (264)
||++||..++ ..++|++.+ +.|..+++. + ...+ +..+..+++++|+||||
T Consensus 1 Mr~~Rf~~~g-----~~~~G~l~g--d~v~~l~g~-------~---f~~~-----------~~tg~~~~L~~VrLLaP 50 (50)
T PF10370_consen 1 MRIVRFSHGG-----EIRYGVLEG--DRVRVLDGD-------P---FGGP-----------RPTGETLPLAEVRLLAP 50 (50)
T ss_dssp -EEEEEEETT-----EEEEEEEET--TCEEEECS--------T---TSS------------EEEEEEEEGGGSEEE-S
T ss_pred CeEEEEeeCC-----CcEEEEEEC--CEEEEEECc-------c---cCCC-----------CcCCCEEechhEEEcCC
Confidence 9999998864 599999966 568888862 1 1122 22345799999999998
No 21
>PF11010 DUF2848: Protein of unknown function (DUF2848); InterPro: IPR021269 This bacterial family of proteins has no known function.
Probab=97.35 E-value=0.001 Score=56.92 Aligned_cols=154 Identities=16% Similarity=0.187 Sum_probs=98.4
Q ss_pred HHHHH---hCCCCCC-CCEEEecCCCceecCCCeeecCCCCcCCceeeeEEEEEEcCCCCCCChhhHhhhhhhhhccccc
Q psy5683 94 DHCDE---QNKTYPE-TPFFFNKFPSTIVGPFSEVTCPTNVTRYLDWEVELAVIIGKKTRDVKPHEAMESVFESDWQKSS 169 (264)
Q Consensus 94 ~h~~e---~~~~~p~-~P~~F~K~~~s~~g~g~~I~~P~~~~~~~d~E~ELavVIgk~~~~i~~~~A~~~i~ard~q~~~ 169 (264)
.|++| .|.+.|. -|.+|-..++-++- ...|.+... .---|+|-+++..+...-|+. +-||. -|++..
T Consensus 13 ~HI~EL~~lGVp~Ps~vP~~Y~v~~~lltq-~~~i~v~g~---~tSGE~E~vli~~~g~~~v~v--gSDHT-DR~lE~-- 83 (194)
T PF11010_consen 13 HHIEELAALGVPPPSSVPLFYRVAPYLLTQ-ADEIEVLGE---DTSGEAEPVLIRHGGELYVGV--GSDHT-DRKLEA-- 83 (194)
T ss_pred HHHHHHHHhCCCCCCCCCEEEEechhhCcc-cCeEEeccC---CCCceEEEEEEEECCeEEEEe--cCCCc-cchhhh--
Confidence 47776 4787774 68888777665544 445555433 556788988766543222211 11111 344433
Q ss_pred ccCCCceeccccCCCcccCCcccccccCCC-CCceEEEEEE--CC--EEEEeccccccccChHHHHHHHH-CCcccCCCC
Q psy5683 170 RNGGQWLFAKSLDTFCPLGPSVVMKEYLND-PHDVTLTCKV--NG--QVKQNASSSNMLHKIPEIVSYLS-EMITLLPGD 243 (264)
Q Consensus 170 ~~~~~~~~~K~~d~~~plGP~ivt~de~~d-~~~l~i~~~v--NG--e~~q~~~t~~m~~~~~~lia~lS-~~~tL~pGD 243 (264)
.+ -..+|..= -.|+++-+-..+|+.| ++.|.++.|+ || ...|+|+.++|+ ++.+|++.+. ....+.+|-
T Consensus 84 -~s--Va~SKq~c-~Kpva~~~W~~~dV~dhWD~l~Lrsw~~~dg~~~lYQeGtla~ll-~p~~ll~~~~~~~~~~~~g~ 158 (194)
T PF11010_consen 84 -YS--VAVSKQAC-PKPVAREAWRLDDVADHWDELELRSWITEDGERVLYQEGTLAALL-PPADLLERLGEGRGDLPEGT 158 (194)
T ss_pred -cC--chhhhhcC-CccchhhcCcHHHHHhhhhheeEEEEEeeCCCEEEEeecchhhcC-CHHHHHHhhhccCCCCCCCE
Confidence 11 12234321 2478886656666654 5779999984 55 467999998764 8999999998 678899999
Q ss_pred EEEcCCCCCCCCCCCCCC
Q psy5683 244 VILTGTPAGVGVFRKPIE 261 (264)
Q Consensus 244 vI~TGTp~Gvg~~~~p~~ 261 (264)
++++||.+-.|..+--.+
T Consensus 159 ~m~~GT~~~~g~~~~a~~ 176 (194)
T PF11010_consen 159 AMFCGTVPAIGGIRPADR 176 (194)
T ss_pred EEEEeccccccCccccce
Confidence 999999887766653333
No 22
>PF09298 FAA_hydrolase_N: Fumarylacetoacetase N-terminal; InterPro: IPR015377 Fumarylacetoacetase (3.7.1.2 from EC; also known as fumarylacetoacetate hydrolase or FAH) catalyses the hydrolytic cleavage of a carbon-carbon bond in fumarylacetoacetate to yield fumarate and acetoacetate as the final step in phenylalanine and tyrosine degradation []. This is an essential metabolic function in humans, the lack of FAH causing type I tyrosinaemia, which is associated with liver and kidney abnormalities and neurological disorders [, ]. The enzyme mechanism involves a catalytic metal ion, a Glu/His catalytic dyad, and a charged oxyanion hole []. FAH folds into two domains: an N-terminal domain SH3-like beta-barrel, and a C-terminal with an unusual fold consisting of three layers of beta-sheet structures []. This entry represents the N-terminal domain of fumarylacetoacetase.; GO: 0004334 fumarylacetoacetase activity, 0009072 aromatic amino acid family metabolic process; PDB: 1QCN_B 1QCO_B 2HZY_A 1QQJ_B 1HYO_A.
Probab=93.71 E-value=0.075 Score=41.47 Aligned_cols=71 Identities=21% Similarity=0.395 Sum_probs=47.5
Q ss_pred EEEEeeCCCCCCCCceEEEEEccCCEEEECCCCC-----C--CC---------cccHHHHHhCCcHHHHHHHHHHhhc--
Q psy5683 3 FVQYKPLNGNGNTPQRLGVQLERNGEIINLSSVD-----S--SM---------PNNLVQFLEGGPELLEKAKRMVSEC-- 64 (264)
Q Consensus 3 l~~~~~~~~~~~~~~~~gvv~~~~~~v~~l~~~~-----~--~~---------p~~l~~~l~~~~~~~~~~~~~~~~~-- 64 (264)
|--|++.++ +.+|+||.+| +.|+||+... . .+ .++|++|++.+.+.+.++|+.++.-
T Consensus 5 fGVFst~~~---~~pR~gvaIG--d~VlDL~al~~~g~~~~~~~~~~~~~~f~~~tLN~fmalg~~~w~avR~~L~~lL~ 79 (107)
T PF09298_consen 5 FGVFSTPDD---PSPRVGVAIG--DQVLDLSALAAAGLFDGPSLSPAAASAFAQPTLNDFMALGRPAWRAVRARLQELLS 79 (107)
T ss_dssp EEEEEESSE---ESEEEEEEET--TEEEEHHHH--GGG--STTTTTG-GGGGGSSSSHHHHHC-HHHHHHHHHHHHHHHB
T ss_pred cEEEecCCC---CCCeeEEEEC--CEEEehHHHhhhcccCcccchhhhHhHhcCCCHHHHHhCCHHHHHHHHHHHHHHHh
Confidence 345664444 6799999998 5899987641 1 01 3589999999999999888766431
Q ss_pred --------------cccccCCCcEEcCC
Q psy5683 65 --------------KCMVKLSEVELLPP 78 (264)
Q Consensus 65 --------------~~~~~~~~v~ll~P 78 (264)
...++.++|++.-|
T Consensus 80 ~~~~~~~~~~~~~~~~L~~~~~v~mhLP 107 (107)
T PF09298_consen 80 ADNSELSDNQALVEPALVPQAEVTMHLP 107 (107)
T ss_dssp TTSCHHHT-HHHHHHHEEEGGGEEEE-S
T ss_pred ccCccccchHHHHHHhcccHHHhhcCCC
Confidence 12357777877655
No 23
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=69.06 E-value=9.5 Score=26.43 Aligned_cols=43 Identities=23% Similarity=0.261 Sum_probs=28.1
Q ss_pred EEEEECCEEEEeccccccccChHHHHHHHHC--------------------CcccCCCCEEEcCCCCC
Q psy5683 205 LTCKVNGQVKQNASSSNMLHKIPEIVSYLSE--------------------MITLLPGDVILTGTPAG 252 (264)
Q Consensus 205 i~~~vNGe~~q~~~t~~m~~~~~~lia~lS~--------------------~~tL~pGDvI~TGTp~G 252 (264)
|++++||+.++-. .+ ++.+|++++.- ...|..||.|--=+|-|
T Consensus 1 m~i~~Ng~~~~~~---~~--tl~~Ll~~l~~~~~~vavavN~~iv~~~~~~~~~L~dgD~Ieiv~~V~ 63 (65)
T PRK06488 1 MKLFVNGETLQTE---AT--TLALLLAELDYEGNWLATAVNGELVHKEARAQFVLHEGDRIEILSPMQ 63 (65)
T ss_pred CEEEECCeEEEcC---cC--cHHHHHHHcCCCCCeEEEEECCEEcCHHHcCccccCCCCEEEEEEecc
Confidence 4677888888762 22 68888877631 34578888876655543
No 24
>KOG1379|consensus
Probab=54.55 E-value=6.6 Score=36.39 Aligned_cols=52 Identities=21% Similarity=0.223 Sum_probs=40.5
Q ss_pred CCCceEEEEEECCEEEEeccccccccChHHHHHHH--------H--------CCcccCCCCEEEcCCC
Q psy5683 199 DPHDVTLTCKVNGQVKQNASSSNMLHKIPEIVSYL--------S--------EMITLLPGDVILTGTP 250 (264)
Q Consensus 199 d~~~l~i~~~vNGe~~q~~~t~~m~~~~~~lia~l--------S--------~~~tL~pGDvI~TGTp 250 (264)
+..+-...+..||+++++..-.+-.|+.+..|+-. + -.+.|++||||+.+|=
T Consensus 187 NLGDSGF~VvR~G~vv~~S~~Q~H~FN~PyQLs~~p~~~~~~~~d~p~~ad~~~~~v~~GDvIilATD 254 (330)
T KOG1379|consen 187 NLGDSGFLVVREGKVVFRSPEQQHYFNTPYQLSSPPEGYSSYISDVPDSADVTSFDVQKGDVIILATD 254 (330)
T ss_pred eccCcceEEEECCEEEEcCchheeccCCceeeccCCccccccccCCccccceEEEeccCCCEEEEecc
Confidence 34445566777999999999999899888777654 2 1367999999999994
No 25
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=46.94 E-value=49 Score=22.55 Aligned_cols=16 Identities=25% Similarity=0.272 Sum_probs=10.7
Q ss_pred cccCCCCEEEcCCCCC
Q psy5683 237 ITLLPGDVILTGTPAG 252 (264)
Q Consensus 237 ~tL~pGDvI~TGTp~G 252 (264)
..|..||-|--=+|-|
T Consensus 48 ~~L~~gD~vei~~~v~ 63 (65)
T PRK06944 48 RALAAGDRLDLVQPVA 63 (65)
T ss_pred ccCCCCCEEEEEeecc
Confidence 4578888876666543
No 26
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=43.32 E-value=68 Score=23.74 Aligned_cols=32 Identities=28% Similarity=0.289 Sum_probs=23.2
Q ss_pred CCCceEEEEEECCEEEEeccccccccChHHHHHHHH
Q psy5683 199 DPHDVTLTCKVNGQVKQNASSSNMLHKIPEIVSYLS 234 (264)
Q Consensus 199 d~~~l~i~~~vNGe~~q~~~t~~m~~~~~~lia~lS 234 (264)
......|.+.|||+..+-..- -++.++|+++.
T Consensus 13 ~~~~~~m~I~VNG~~~~~~~~----~tl~~LL~~l~ 44 (84)
T PRK06083 13 GAAMVLITISINDQSIQVDIS----SSLAQIIAQLS 44 (84)
T ss_pred CCCCceEEEEECCeEEEcCCC----CcHHHHHHHcC
Confidence 456778999999998875432 25888888764
No 27
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=43.23 E-value=47 Score=23.00 Aligned_cols=15 Identities=27% Similarity=0.122 Sum_probs=9.7
Q ss_pred cccCCCCEEEcCCCC
Q psy5683 237 ITLLPGDVILTGTPA 251 (264)
Q Consensus 237 ~tL~pGDvI~TGTp~ 251 (264)
..|..||-|--=+|-
T Consensus 49 ~~L~~gD~Ieii~~v 63 (66)
T PRK08053 49 HIVQDGDQILLFQVI 63 (66)
T ss_pred cccCCCCEEEEEEEc
Confidence 357888877655553
No 28
>PF03990 DUF348: Domain of unknown function (DUF348) ; InterPro: IPR007137 This domain normally occurs as tandem repeats; however it is found as a single copy in the Saccharomyces cerevisiae (Baker's yeast) DNA-binding nuclear protein YCR593 (P25357 from SWISSPROT).
Probab=42.54 E-value=87 Score=19.81 Aligned_cols=38 Identities=21% Similarity=0.224 Sum_probs=29.3
Q ss_pred EEEEECCEEEEeccccccccChHHHHHHHHCCcccCCCCEEEc
Q psy5683 205 LTCKVNGQVKQNASSSNMLHKIPEIVSYLSEMITLLPGDVILT 247 (264)
Q Consensus 205 i~~~vNGe~~q~~~t~~m~~~~~~lia~lS~~~tL~pGDvI~T 247 (264)
+++.+||+.+.-.+++. ++.+++.. ..++|.+.|.|.-
T Consensus 2 Vtv~~dG~~~~v~T~a~---tV~~~L~~--~gI~l~~~D~v~p 39 (43)
T PF03990_consen 2 VTVTVDGKEKTVYTTAS---TVGDALKE--LGITLGEEDKVSP 39 (43)
T ss_pred EEEEECCEEEEEEeCCC---CHHHHHHh--CCCCCCCCCEEec
Confidence 67889999987666654 78888864 6788999998853
No 29
>PRK07440 hypothetical protein; Provisional
Probab=40.70 E-value=66 Score=22.74 Aligned_cols=26 Identities=27% Similarity=0.584 Sum_probs=16.4
Q ss_pred EEEEEECCEEEEeccccccccChHHHHHHH
Q psy5683 204 TLTCKVNGQVKQNASSSNMLHKIPEIVSYL 233 (264)
Q Consensus 204 ~i~~~vNGe~~q~~~t~~m~~~~~~lia~l 233 (264)
.|.++|||+.++-... -++.+++..+
T Consensus 4 ~m~i~vNG~~~~~~~~----~tl~~lL~~l 29 (70)
T PRK07440 4 PITLQVNGETRTCSSG----TSLPDLLQQL 29 (70)
T ss_pred ceEEEECCEEEEcCCC----CCHHHHHHHc
Confidence 4778888887664321 2466777655
No 30
>cd01617 DCX Ubiquitin-like domain of DCX. DCX The ubiquitin-like DCX domain is present in tandem within the N-terminal half of the doublecortin protein. Doublecortin is expressed in migrating neurons. Mutations in the gene encoding doublecortin cause lissencephaly in males and 'double-cortex syndrome' in females.
Probab=38.41 E-value=37 Score=24.67 Aligned_cols=49 Identities=20% Similarity=0.211 Sum_probs=39.0
Q ss_pred EEEEEECCEEEEecc----ccccccChHHHHHHHHCCcccCCCCEEEcCCCCC
Q psy5683 204 TLTCKVNGQVKQNAS----SSNMLHKIPEIVSYLSEMITLLPGDVILTGTPAG 252 (264)
Q Consensus 204 ~i~~~vNGe~~q~~~----t~~m~~~~~~lia~lS~~~tL~pGDvI~TGTp~G 252 (264)
.|.++.||..-..|- .....-+++.++.+||+.+.|.+|-|=---||.|
T Consensus 2 ~I~~~rNGD~~~~g~~~~i~~~~~~sfd~lL~~lt~~l~l~~~~Vr~lyt~~g 54 (80)
T cd01617 2 RVVVYRNGDPFFKGVRLLVNRRRFKSFDALLDDLTEKVQLDPGAVRKLYTLDG 54 (80)
T ss_pred EEEEEECCCCCCCCEEEEEChhhhCCHHHHHHHHHHHhCCCCCcEEEEEcCCC
Confidence 467778887766553 2445679999999999999999999888888877
No 31
>PF13799 DUF4183: Domain of unknown function (DUF4183)
Probab=37.15 E-value=20 Score=26.81 Aligned_cols=38 Identities=32% Similarity=0.445 Sum_probs=25.9
Q ss_pred ceEEEEEECCEEEEeccccccccChHHHHHHHHCCcccCCCCEEEcCCC
Q psy5683 202 DVTLTCKVNGQVKQNASSSNMLHKIPEIVSYLSEMITLLPGDVILTGTP 250 (264)
Q Consensus 202 ~l~i~~~vNGe~~q~~~t~~m~~~~~~lia~lS~~~tL~pGDvI~TGTp 250 (264)
+=-..++|||-. |.++....- ....+|..+|.|..|||
T Consensus 42 ~sY~NLyINGvL-Q~~~~ytvt----------~~~Lti~~~d~~~~GtP 79 (84)
T PF13799_consen 42 NSYYNLYINGVL-QPGSLYTVT----------TGSLTINTGDPILAGTP 79 (84)
T ss_pred ceEEEEEEEEEe-cCCcceEEe----------cceEEEcCCCCCCCCCc
Confidence 445778999955 555443222 44578888888888888
No 32
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=37.12 E-value=58 Score=22.77 Aligned_cols=26 Identities=23% Similarity=0.452 Sum_probs=13.4
Q ss_pred EEEEECCEEEEeccccccccChHHHHHHH
Q psy5683 205 LTCKVNGQVKQNASSSNMLHKIPEIVSYL 233 (264)
Q Consensus 205 i~~~vNGe~~q~~~t~~m~~~~~~lia~l 233 (264)
|+++|||+.++-... .-++.++++.+
T Consensus 1 m~I~vNG~~~~~~~~---~~tv~~lL~~l 26 (67)
T PRK07696 1 MNLKINGNQIEVPES---VKTVAELLTHL 26 (67)
T ss_pred CEEEECCEEEEcCCC---cccHHHHHHHc
Confidence 356677776643211 12366666654
No 33
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=36.24 E-value=61 Score=22.43 Aligned_cols=44 Identities=14% Similarity=0.114 Sum_probs=26.0
Q ss_pred EEEEECCEEEEeccccccccChHHHHHHHHC-------------------CcccCCCCEEEcCCCCC
Q psy5683 205 LTCKVNGQVKQNASSSNMLHKIPEIVSYLSE-------------------MITLLPGDVILTGTPAG 252 (264)
Q Consensus 205 i~~~vNGe~~q~~~t~~m~~~~~~lia~lS~-------------------~~tL~pGDvI~TGTp~G 252 (264)
|+++|||+.++-... .++.+++..+.- ..+|..||.|--=++-|
T Consensus 1 m~i~vNG~~~~~~~~----~tl~~ll~~l~~~~~~vav~~N~~iv~r~~~~~~L~~gD~ieIv~~Vg 63 (65)
T PRK05863 1 MIVVVNEEQVEVDEQ----TTVAALLDSLGFPEKGIAVAVDWSVLPRSDWATKLRDGARLEVVTAVQ 63 (65)
T ss_pred CEEEECCEEEEcCCC----CcHHHHHHHcCCCCCcEEEEECCcCcChhHhhhhcCCCCEEEEEeecc
Confidence 456778887765421 246666665431 12588888886655544
No 34
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=36.05 E-value=65 Score=22.00 Aligned_cols=14 Identities=29% Similarity=0.297 Sum_probs=8.9
Q ss_pred cccCCCCEEEcCCC
Q psy5683 237 ITLLPGDVILTGTP 250 (264)
Q Consensus 237 ~tL~pGDvI~TGTp 250 (264)
..|+.||-|--=++
T Consensus 49 ~~l~~gD~vei~~~ 62 (66)
T PRK05659 49 TALREGDVVEIVHA 62 (66)
T ss_pred ccCCCCCEEEEEEE
Confidence 55778887755444
No 35
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=31.16 E-value=79 Score=21.65 Aligned_cols=16 Identities=38% Similarity=0.362 Sum_probs=11.2
Q ss_pred cccCCCCEEEcCCCCC
Q psy5683 237 ITLLPGDVILTGTPAG 252 (264)
Q Consensus 237 ~tL~pGDvI~TGTp~G 252 (264)
..|..||-|.-=+|.+
T Consensus 48 ~~L~~gD~V~ii~~v~ 63 (65)
T cd00565 48 TPLQDGDRIEIVTAVG 63 (65)
T ss_pred eecCCCCEEEEEEecc
Confidence 5688888887666543
No 36
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=28.66 E-value=92 Score=21.27 Aligned_cols=16 Identities=38% Similarity=0.256 Sum_probs=11.3
Q ss_pred cccCCCCEEEcCCCCC
Q psy5683 237 ITLLPGDVILTGTPAG 252 (264)
Q Consensus 237 ~tL~pGDvI~TGTp~G 252 (264)
..|..||.|.-=+|.|
T Consensus 47 ~~L~~gD~veii~~V~ 62 (64)
T TIGR01683 47 TILKEGDRIEIVTFVG 62 (64)
T ss_pred eecCCCCEEEEEEecc
Confidence 4588888887666644
No 37
>PF00498 FHA: FHA domain; InterPro: IPR000253 The forkhead-associated (FHA) domain [] is a phosphopeptide recognition domain found in many regulatory proteins. It displays specificity for phosphothreonine-containing epitopes but will also recognise phosphotyrosine with relatively high affinity. It spans approximately 80-100 amino acid residues folded into an 11-stranded beta sandwich, which sometimes contain small helical insertions between the loops connecting the strands []. To date, genes encoding FHA-containing proteins have been identified in eubacterial and eukaryotic but not archaeal genomes. The domain is present in a diverse range of proteins, such as kinases, phosphatases, kinesins, transcription factors, RNA-binding proteins and metabolic enzymes which partake in many different cellular processes - DNA repair, signal transduction, vesicular transport and protein degradation are just a few examples.; GO: 0005515 protein binding; PDB: 1LGQ_B 1LGP_A 2CSW_A 2PIE_A 3FM8_A 3MDB_B 3GQS_B 1UHT_A 1WLN_A 3POA_A ....
Probab=28.38 E-value=35 Score=23.20 Aligned_cols=15 Identities=40% Similarity=0.592 Sum_probs=9.7
Q ss_pred HCCcccCCCCEEEcC
Q psy5683 234 SEMITLLPGDVILTG 248 (264)
Q Consensus 234 S~~~tL~pGDvI~TG 248 (264)
.+...|..||+|--|
T Consensus 54 ~~~~~L~~gd~i~~G 68 (68)
T PF00498_consen 54 GEPVPLKDGDIIRFG 68 (68)
T ss_dssp TSEEEE-TTEEEEET
T ss_pred CCEEECCCCCEEEcC
Confidence 345778888888655
No 38
>cd03701 IF2_IF5B_II IF2_IF5B_II: This family represents the domain II of prokaryotic Initiation Factor 2 (IF2) and its archeal and eukaryotic homologue aeIF5B. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of the 60S ribosomal subunit. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains in EF1A, eEF1A and aeIF2gamma.
Probab=27.53 E-value=35 Score=25.73 Aligned_cols=18 Identities=44% Similarity=0.554 Sum_probs=15.2
Q ss_pred CCcccCCCCEEEcCCCCC
Q psy5683 235 EMITLLPGDVILTGTPAG 252 (264)
Q Consensus 235 ~~~tL~pGDvI~TGTp~G 252 (264)
+.=||+.||.|.+|+-.|
T Consensus 23 ~~GtL~~Gd~iv~G~~~G 40 (95)
T cd03701 23 QNGTLKKGDVIVAGGTYG 40 (95)
T ss_pred EcCeEecCCEEEECCccc
Confidence 456899999999999765
No 39
>PF02946 GTF2I: GTF2I-like repeat; InterPro: IPR004212 This region of sequence similarity is found up to six times in a variety of proteins including general transcription factor II-I (GTF2I). It has been suggested that this may be a DNA binding domain [, ].; PDB: 2E3L_A 2D99_A 2DN4_A 2D9B_A 2EJE_A 1Q60_A 2DZR_A 2DN5_A 2DZQ_A 2ED2_A.
Probab=27.27 E-value=56 Score=23.93 Aligned_cols=25 Identities=32% Similarity=0.614 Sum_probs=15.6
Q ss_pred cccCCCCEEEcCCCCCCCCCCCCCCC
Q psy5683 237 ITLLPGDVILTGTPAGVGVFRKPIES 262 (264)
Q Consensus 237 ~tL~pGDvI~TGTp~Gvg~~~~p~~~ 262 (264)
+.-.|+|+..+|=|.|+. .++|..|
T Consensus 30 ~~~~p~~v~V~GLPegi~-fr~P~~Y 54 (76)
T PF02946_consen 30 FQRDPEAVYVQGLPEGIP-FRRPSNY 54 (76)
T ss_dssp HHHTTTTEEEES--TT---SS-TTTS
T ss_pred HhhCCCcEEEEeCCCCCc-CCCCCcC
Confidence 345799999999999984 6667554
No 40
>cd01674 Homoaconitase_Swivel Homoaconitase swivel domain. This family includes homoaconitase and other uncharacterized proteins of the Aconitase family. Homoaconitase is part of an unusual lysine biosynthesis pathway found only in filamentous fungi, in which lysine is synthesized via the alpha-aminoadipate pathway. In this pathway, homoaconitase catalyzes the conversion of cis-homoaconitic acid into homoisocitric acid. The reaction mechanism is believed to be similar to that of other aconitases. This is the swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism.
Probab=27.16 E-value=73 Score=25.72 Aligned_cols=34 Identities=21% Similarity=0.308 Sum_probs=26.4
Q ss_pred ChHHHHHHHHCC------cccCCCCEEEcCCCCCCCCCCC
Q psy5683 225 KIPEIVSYLSEM------ITLLPGDVILTGTPAGVGVFRK 258 (264)
Q Consensus 225 ~~~~lia~lS~~------~tL~pGDvI~TGTp~Gvg~~~~ 258 (264)
++++|-.|+-.. ..+++||||.+|-=-|.|..|+
T Consensus 23 ~~e~la~~~~e~~dp~f~~~v~~gdilVaG~nFG~GSSRE 62 (129)
T cd01674 23 TPEKMAEVCMENYDSEFSTKTKQGDILVSGFNFGTGSSRE 62 (129)
T ss_pred CHHHHHHhhcccCCchhhhcCCCCCEEEeCCccCCCCcHH
Confidence 566666666432 4588999999999999998876
No 41
>cd03703 aeIF5B_II aeIF5B_II: This family represents the domain II of archeal and eukaryotic aeIF5B. aeIF5B is a homologue of prokaryotic Initiation Factor 2 (IF2). Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of joining of 60S subunits. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains of EF1A, eEF1A and aeIF2gamma.
Probab=23.78 E-value=51 Score=25.82 Aligned_cols=17 Identities=35% Similarity=0.282 Sum_probs=15.1
Q ss_pred CcccCCCCEEEcCCCCC
Q psy5683 236 MITLLPGDVILTGTPAG 252 (264)
Q Consensus 236 ~~tL~pGDvI~TGTp~G 252 (264)
.=||+.||.|..|+..|
T Consensus 24 ~GtL~~GD~Iv~g~~~G 40 (110)
T cd03703 24 DGTLREGDTIVVCGLNG 40 (110)
T ss_pred CCeEecCCEEEEccCCC
Confidence 45899999999999987
No 42
>PRK15175 Vi polysaccharide export protein VexA; Provisional
Probab=22.66 E-value=83 Score=29.72 Aligned_cols=39 Identities=18% Similarity=0.216 Sum_probs=28.0
Q ss_pred eEEEEEECCEEEEeccccccccChHHHHHHHHCCcccCCCCEEEcCC
Q psy5683 203 VTLTCKVNGQVKQNASSSNMLHKIPEIVSYLSEMITLLPGDVILTGT 249 (264)
Q Consensus 203 l~i~~~vNGe~~q~~~t~~m~~~~~~lia~lS~~~tL~pGDvI~TGT 249 (264)
-.+++..+|+.. ..+..+|+.+-++...|+|||+|.-.-
T Consensus 198 ~~V~l~R~~~~~--------~i~l~dL~~~~~~ni~L~~GDvI~V~~ 236 (355)
T PRK15175 198 MEVHVTRQQHYF--------TARLSDIYQYPGLDIALQPDDRITLRQ 236 (355)
T ss_pred cEEEEEECCEEE--------EEEHHHHhhCCcCCcEeCCCCEEEEcc
Confidence 356777777553 344677777777889999999997654
No 43
>COG0146 HyuB N-methylhydantoinase B/acetone carboxylase, alpha subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=21.50 E-value=60 Score=32.56 Aligned_cols=33 Identities=27% Similarity=0.380 Sum_probs=28.6
Q ss_pred ccccccChHHHHHHHHCCcccCCCCEEEcCCCC
Q psy5683 219 SSNMLHKIPEIVSYLSEMITLLPGDVILTGTPA 251 (264)
Q Consensus 219 t~~m~~~~~~lia~lS~~~tL~pGDvI~TGTp~ 251 (264)
...|.+++-.+|.+.-....|+||||+++--|-
T Consensus 62 lGsM~~~vk~~i~~~~~~~~l~pGDV~~~NdPy 94 (563)
T COG0146 62 LGSMSVSVKAMIRNNKENPDLEPGDVFITNDPY 94 (563)
T ss_pred ecccHHHHHHHHHhhccCCCCCCCCEEEecCcc
Confidence 467888999999988667799999999999985
No 44
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=21.30 E-value=2.7e+02 Score=19.35 Aligned_cols=16 Identities=13% Similarity=-0.066 Sum_probs=10.5
Q ss_pred CcccCCCCEEEcCCCC
Q psy5683 236 MITLLPGDVILTGTPA 251 (264)
Q Consensus 236 ~~tL~pGDvI~TGTp~ 251 (264)
...|++||-|-.=+|-
T Consensus 52 ~~~l~~gD~Veii~~V 67 (70)
T PRK08364 52 DDPVKDGDYVEVIPVV 67 (70)
T ss_pred CcCcCCCCEEEEEccc
Confidence 4568888877655543
Done!