RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy5683
         (264 letters)



>3r6o_A 2-hydroxyhepta-2,4-diene-1, 7-dioateisomerase; ssgcid, struc
           genomics, seattle structural genomics center for
           infectious isomerase; 1.95A {Mycobacterium abscessus}
          Length = 329

 Score =  297 bits (762), Expect = e-101
 Identities = 70/283 (24%), Positives = 117/283 (41%), Gaps = 26/283 (9%)

Query: 1   MRFVQYKPLNGNGNTPQRLGVQLERNGEIINLSSVDSSM---PNNLVQFLEGGPELLEKA 57
           +R V +   +       + GV L  +  +  L+ + +      ++  + +   P++    
Sbjct: 24  LRIVSFAGADQ-----WQPGV-LIDDDTVAPLAPMLARHDIQVSSARELIALLPQISPLI 77

Query: 58  KRMVSECKCM-VKLSEVELLPPITRPDKILCIALNYKDHCD-EQNKTYPETPFFFNKFPS 115
              ++      V L  V L  PI  P +++ +  NY  H D +        P  F K P+
Sbjct: 78  SDELAGGSFEPVPLDSVALGAPIPEPGQVIALGFNYPTHSDTDSPLPKMADPVVFMKSPT 137

Query: 116 TIVGPFSEVTCPTNVTRYLDWEVELAVIIGKKTRDVKPHEAMESVF---------ESDWQ 166
           +I GP   V  P      LD+E+E+AV+IGK    ++  +A++ V            D  
Sbjct: 138 SISGPRDAVIAPRTSHA-LDYEIEIAVVIGKPGYRIERSQAIKHVAGYMLANDITARDVA 196

Query: 167 K-----SSRNGGQWLFAKSLDTFCPLGPSVVMKEYLNDPHDVTLTCKVNGQVKQNASSSN 221
                  S    Q +  K   TFCP GP +                ++NG+++Q+ S+ +
Sbjct: 197 LPFGFGGSPLQAQVVRGKGYPTFCPTGPWLFTTGSDTTFETFDFELRINGELRQSGSTVD 256

Query: 222 MLHKIPEIVSYLSEMITLLPGDVILTGTPAGVGVFRKPIESLK 264
           M     E+V  +S  I L  GD+ILTGTP G G    P   L+
Sbjct: 257 MTLGFAEVVETVSATIALRAGDIILTGTPGGCGFQFDPPRYLR 299


>1wzo_A HPCE; structural genomics, riken structural genomics/proteom
           initiative, RSGI, NPPSFA, isomerase; 1.90A {Thermus
           thermophilus}
          Length = 246

 Score =  269 bits (689), Expect = 3e-91
 Identities = 74/223 (33%), Positives = 117/223 (52%), Gaps = 16/223 (7%)

Query: 43  LVQFLEGGPEL--LEKAKRMVSECKCMVKLSEVELLPPITRPDKILCIALNYKDHCDEQN 100
           L +FL  G     + +   ++ E     +  +V  L P T P KIL +ALNY DH +E  
Sbjct: 3   LARFLAKGRVHQGVYREGLLLDEAGEAHRPEDVTWLLPFT-PGKILGVALNYADHAEELG 61

Query: 101 KTYPETPFFFNKFPSTIVGPFSEVTCPTNVTRYLDWEVELAVIIGKKTRDVKPHEAMESV 160
            + PE P  F K  ++++     V  P      + +EVELAV++G+  + V+  +A++ V
Sbjct: 62  LSRPEEPALFWKPNTSLLPHKGVVLYPKGARF-VHYEVELAVVVGRPMKRVRAKDALDYV 120

Query: 161 F---------ESDWQKSSRNGGQWLFAKSLDTFCPLGPSVVMKEYLNDPHDVTLTCKVNG 211
                       D+          + AK  DTF PLGP +V++E   DP D+ L   VNG
Sbjct: 121 LGYTIANDLVARDYVT--NTFRPPIRAKGRDTFLPLGPFLVVEEVE-DPQDLWLRAYVNG 177

Query: 212 QVKQNASSSNMLHKIPEIVSYLSEMITLLPGDVILTGTPAGVG 254
           +++Q   +S ML+ + E++ ++SE +TL P DV+LTGTP G+ 
Sbjct: 178 ELRQEGHTSRMLYSVAELLEFISEFMTLEPYDVLLTGTPKGIS 220


>3rr6_A Putative uncharacterized protein; structural genomics, seattle
           structural genomics center for infectious disease,
           ssgcid; 1.58A {Mycobacterium abscessus} PDB: 3qdf_A
          Length = 265

 Score =  267 bits (684), Expect = 2e-90
 Identities = 84/266 (31%), Positives = 122/266 (45%), Gaps = 38/266 (14%)

Query: 1   MRFVQYKPLNGNGNTPQRLGVQLERNGEIINLSSVDSSMPNNLVQFLEGGPELLEKAKRM 60
           MR  +    +G                    +   D    + + + +   P         
Sbjct: 5   MRLGRIASPDG-----VAFVS----------IEGEDGREESAIAREIAEHPFGTPTFTGR 49

Query: 61  VSECKCMVKLSEVELLPPITRPDKILCIALNYKDHCDEQNKTYPETPFFFNKFPSTIVGP 120
                    L++V LL PI    K++ +  NY  H  E     PE+P  F K  ++I+GP
Sbjct: 50  Q------WPLADVRLLAPIL-ASKVVAMGKNYAAHAAEMGGDPPESPVIFIKPNTSIIGP 102

Query: 121 FSEVTCPTNVTRYLDWEVELAVIIGKKTRDVKPHEAMESVF---------ESDWQKSSRN 171
              +  P + T  +  E ELA++IG+  +DV    A E++            D Q   R 
Sbjct: 103 GLPIQLPPSATE-VHHEGELAIVIGRPCKDVPAARAAENILGYTIGNDVSARDHQ---RA 158

Query: 172 GGQWLFAKSLDTFCPLGPSVVMKEYLNDPHDVTLTCKVNGQVKQNASSSNMLHKIPEIVS 231
            GQW  AK  DTFCPLGP +V      DP D+ +  +VNGQV+Q + +S +LH +  IV 
Sbjct: 159 DGQWTRAKGHDTFCPLGPWIVTDL---DPADLEIRTEVNGQVRQRSRTSLLLHDVGAIVE 215

Query: 232 YLSEMITLLPGDVILTGTPAGVGVFR 257
           ++S ++TLLPGDVILTGTP GVG   
Sbjct: 216 WVSAVMTLLPGDVILTGTPEGVGPIV 241


>2dfu_A Probable 2-hydroxyhepta-2,4-diene-1,7-dioate ISOM;
           2-hydroxyhepta-2,4-diene-1,7-dioate isomerase,
           structural GE NPPSFA; 2.20A {Thermus thermophilus}
          Length = 264

 Score =  257 bits (660), Expect = 1e-86
 Identities = 73/211 (34%), Positives = 104/211 (49%), Gaps = 28/211 (13%)

Query: 68  VKLSEVELLPPITRPDKILCIALNYKDHCDEQNKTY----PETPFFFNKFPSTIVGPFSE 123
             L+ V LLPP   P KI+C+  NY++H  E    +    P+ P  F K P+ +  P + 
Sbjct: 34  YDLASVTLLPPA-TPTKIVCVGRNYREHIREMGHDFGEDLPKEPGLFLKGPNALARPGNP 92

Query: 124 VTCPTN--------VTRYLDWEVELAVIIGKKTRDVKPHEAMESVF---------ESDWQ 166
                          T  L +E ELAV++G + R V P +A++ V            D Q
Sbjct: 93  RDPWGTAEPVPYPFFTEELHYEGELAVVVGDRMRHVPPEKALDHVLGYTVAVDITARDVQ 152

Query: 167 KSSRNGGQWLFAKSLDTFCPLGPSVVMKEYLNDPHDVTLTCKVNGQVKQNASSSNMLHKI 226
              +   QW+ AKS D F PLGP +       +P D  +   VNG ++Q   +S M+  +
Sbjct: 153 ---KKDLQWVRAKSADKFLPLGPWLETDL---NPQDTWVRTYVNGTLRQEGHTSQMIFSV 206

Query: 227 PEIVSYLSEMITLLPGDVILTGTPAGVGVFR 257
            EI+SY+S  +TL P DV+LTGTP GVG  R
Sbjct: 207 AEILSYISTFMTLEPLDVVLTGTPEGVGALR 237


>1gtt_A 4-hydroxyphenylacetate degradation bifunctional
           isomerase/decarboxylase; lyase, bifunctional enzyme,
           multifunctional enzyme decarboxylase; 1.7A {Escherichia
           coli} SCOP: d.177.1.1 d.177.1.1 PDB: 1i7o_A
          Length = 429

 Score =  261 bits (669), Expect = 7e-86
 Identities = 72/277 (25%), Positives = 117/277 (42%), Gaps = 41/277 (14%)

Query: 16  PQRLGVQLERNGE-----------------IINLSSVDSSMPNNL--------VQFLEGG 50
              L +  E NG                  +  LS   +  P +            ++ G
Sbjct: 127 VDNLTIYTEINGRPADHWNTADLQRNAAQLLSALSEFATLNPGDAILLGTPQARVEIQPG 186

Query: 51  PE---LLEKAKRMVSECK-CMVKLSEVELLPPITRPDKILCIALNYKDHCDEQNKTYPET 106
                L E    + +         +             +  + LNY DH  E     PE 
Sbjct: 187 DRVRVLAEGFPPLENPVVDEREVTTRKSFPTLPHPHGTLFALGLNYADHASELEFKPPEE 246

Query: 107 PFFFNKFPSTIVGPFSEVTCPTNVTRYLDWEVELAVIIGKKTRDVKPHEAMESVF----- 161
           P  F K P+T+ G       P N+   + +E EL V+IGK+ R+V   +AM+ V      
Sbjct: 247 PLVFLKAPNTLTGDNQTSVRPNNIEY-MHYEAELVVVIGKQARNVSEADAMDYVAGYTVC 305

Query: 162 ----ESDWQKSSRNGGQWLFAKSLDTFCPLGPSVVMKEYLNDPHDVTLTCKVNGQVKQNA 217
                 D+ +        L  KS D   P+  ++V KE + DPH++TL   VNG+++Q  
Sbjct: 306 NDYAIRDYLE--NYYRPNLRVKSRDGLTPMLSTIVPKEAIPDPHNLTLRTFVNGELRQQG 363

Query: 218 SSSNMLHKIPEIVSYLSEMITLLPGDVILTGTPAGVG 254
           ++++++  +P +++YLSE +TL PGD+I TGTP G+ 
Sbjct: 364 TTADLIFSVPFLIAYLSEFMTLNPGDMIATGTPKGLS 400



 Score =  234 bits (600), Expect = 2e-75
 Identities = 44/190 (23%), Positives = 83/190 (43%), Gaps = 27/190 (14%)

Query: 82  PDKILCIALNYKDHCDEQNKTY--------PETPFFFNKFPSTIVGPFSEVTCPTNVTRY 133
              I  +ALN++   D   + +        P+T  +F K  +T++G    +  P      
Sbjct: 2   KGTIFAVALNHRSQLDAWQEAFQQSPYKAPPKTAVWFIKPRNTVIGCGEPIPFPQGEK-- 59

Query: 134 LDWEVELAVIIGKKTRDVKPHEAMESVF---------ESDWQKSSRNGGQWLFAKSLDTF 184
           +     +A+I+GK    V+  +A E +            +           + AK  D F
Sbjct: 60  VLSGATVALIVGKTATKVREEDAAEYIAGYALANDVSLPEESF----YRPAIKAKCRDGF 115

Query: 185 CPLGPSVVMKEYLNDPHDVTLTCKVNGQVKQNASSSNMLHKIPEIVSYLSEMITLLPGDV 244
           CP+G +V +     +  ++T+  ++NG+   + +++++     +++S LSE  TL PGD 
Sbjct: 116 CPIGETVALS----NVDNLTIYTEINGRPADHWNTADLQRNAAQLLSALSEFATLNPGDA 171

Query: 245 ILTGTPAGVG 254
           IL GTP    
Sbjct: 172 ILLGTPQARV 181


>1saw_A Hypothetical protein FLJ36880; structural genomics,
           fumarylacetoacetatehydrolase family, unknown function;
           2.20A {Homo sapiens} SCOP: d.177.1.1
          Length = 225

 Score =  235 bits (602), Expect = 2e-78
 Identities = 68/190 (35%), Positives = 93/190 (48%), Gaps = 12/190 (6%)

Query: 75  LLPPITRPDKILCIALNYKDHCDEQNKTYPETPFFFNKFPSTIVGPFSEVTCPTNVTRYL 134
           L         I+C+  NY DH  E        P  F K  +      S +  P      L
Sbjct: 11  LSRFWEWGKNIVCVGRNYADHVREMRSAVLSEPVLFLKPSTAYAPEGSPILMPAYTRN-L 69

Query: 135 DWEVELAVIIGKKTRDVKPHEAMESVF---------ESDWQ-KSSRNGGQWLFAKSLDTF 184
             E+EL V++GK+ R V    AM+ V            D Q +  + G  W  AKS    
Sbjct: 70  HHELELGVVMGKRCRAVPEAAAMDYVGGYALCLDMTARDVQDECKKKGLPWTLAKSFTAS 129

Query: 185 CPLGPSVVMKEYLNDPHDVTLTCKVNGQVKQNASSSNMLHKIPEIVSYLSEMITLLPGDV 244
           CP+    V KE + DPH + L  KVNG+++Q   +S+M+  IP I+SY+S++ITL  GD+
Sbjct: 130 CPVSA-FVPKEKIPDPHKLKLWLKVNGELRQEGETSSMIFSIPYIISYVSKIITLEEGDI 188

Query: 245 ILTGTPAGVG 254
           ILTGTP GVG
Sbjct: 189 ILTGTPKGVG 198


>3l53_A Putative fumarylacetoacetate isomerase/hydrolase; structural
           genomics, PSI-2, protein structure initiative; HET: TAR;
           2.10A {Oleispira antarctica} PDB: 3v77_A*
          Length = 224

 Score =  223 bits (572), Expect = 7e-74
 Identities = 65/198 (32%), Positives = 94/198 (47%), Gaps = 14/198 (7%)

Query: 70  LSEVELLPPI--TRPDKILCIALNYKDHCDEQNKTYPETPFFFNKFPSTIVGPFSEVTCP 127
           ++E+ L          KI+C+  NY  H  E N   P +P  F K  S+ V      + P
Sbjct: 1   MAELILNQRPYPRDLGKIVCVGRNYAAHAKELNNPIPSSPILFIKPASSAVPFGPVFSIP 60

Query: 128 TNVTRYLDWEVELAVIIGKKTRDVKPHEAMESVFE---------SDWQKSSR-NGGQWLF 177
            +    +  E+E+A++IGK        +  ES+            D Q   +  G  W  
Sbjct: 61  KDQGS-VHHELEIAILIGKALSRASTEQVAESIAGIGLGLDLTLRDVQDQLKEKGHPWER 119

Query: 178 AKSLDTFCPLGPSVVMKEYLN-DPHDVTLTCKVNGQVKQNASSSNMLHKIPEIVSYLSEM 236
           AKS D  CPL   V +      +   + LT + NGQ +Q  SS+ ML  I  +++++SE 
Sbjct: 120 AKSFDGACPLTEFVAVNLASEDEWQAIGLTLEKNGQFQQQGSSAEMLFPILPLIAHMSEH 179

Query: 237 ITLLPGDVILTGTPAGVG 254
            +L PGDVILTGTPAGVG
Sbjct: 180 FSLQPGDVILTGTPAGVG 197


>2q18_X 2-keto-3-deoxy-D-arabinonate dehydratase; FAH-family fold, lyase;
           2.10A {Sulfolobus solfataricus} PDB: 2q19_X 2q1a_X
           2q1c_X 2q1d_X 3bqb_A
          Length = 293

 Score =  226 bits (577), Expect = 1e-73
 Identities = 48/286 (16%), Positives = 97/286 (33%), Gaps = 51/286 (17%)

Query: 1   MRFVQYKPLNGNGNTPQRLGVQLERNGEIINLSSVDSSMPNNLVQFLEGGPELLEKAKRM 60
           M+  +               +    N  II L   D      L+++ E    L ++   +
Sbjct: 1   MKLFRV----VKRGYYISYAI--LDNSTIIRL---DEDPIKALMRYSENKEVLGDRVTGI 51

Query: 61  -VSECKCMVKLSEVELLPPITRPDKILCIALNYKDHCDE---------------QNKTYP 104
                    +++++ +  PI  P ++    ++Y+   +                +     
Sbjct: 52  DYQSLLKSFQINDIRITKPIDPP-EVWGSGISYEMARERYSEENVAKILGKTIYEKVYDA 110

Query: 105 ETPF-FFNKFPSTIVGPFSEVTCPTNVTRYLDWEVELAVIIGKKTR--------DVKPHE 155
             P  FF   P+  VG    +   ++       E ELAV++    +        DV    
Sbjct: 111 VRPEIFFKATPNRCVGHGEAIAVRSDSEW-TLPEPELAVVLDSNGKILGYTIMDDV---- 165

Query: 156 AMESVFESDWQKSSRNGGQWLFAKSLDTFCPLGPSVVMKEYLNDPHDVTLTCKVNG---- 211
              S    D +    N      +K     C  GP +V  + + +P+ + +T K+      
Sbjct: 166 ---S--ARDLEA--ENPLYLPQSKIYAGCCAFGPVIVTSDEIKNPYSLDITLKIVREGRV 218

Query: 212 QVKQNASSSNMLHKIPEIVSYLSEMITLLPGDVILTGTPAGVGVFR 257
             + + +++ M  KI E + YL     +  G ++ TGT    G  +
Sbjct: 219 FFEGSVNTNKMRRKIEEQIQYLIRDNPIPDGTILTTGTAIVPGRDK 264


>3s52_A Putative fumarylacetoacetate hydrolase family Pro; csgid,
           structural genomics, center for structural genomics O
           infectious diseases; 2.01A {Yersinia pestis} PDB: 1nr9_A
          Length = 221

 Score =  218 bits (557), Expect = 1e-71
 Identities = 49/181 (27%), Positives = 82/181 (45%), Gaps = 12/181 (6%)

Query: 84  KILCIALNYKDHCDEQNKTYPETPFFFNKFPSTIVGPFSEVTCPTNVTRYLDWEVELAVI 143
           K++C+  NY +H  E   T    P  F K  + +      V+ P +    +  E+ELAV+
Sbjct: 21  KVVCVGSNYAEHIKEMGSTASVEPVLFIKPETALCDIRQPVSIPKDFGS-VHHEIELAVL 79

Query: 144 IGKKTRDVKPHEAMESVF---------ESDWQKSSR-NGGQWLFAKSLDTFCPLGPSVVM 193
           IG   +         ++            + Q   +  G  W  AK+ D  CP+   +  
Sbjct: 80  IGTPLKQASEDRVARAIAGYGVALDLTLRELQAGFKKAGQPWEKAKAFDGSCPISGFIP- 138

Query: 194 KEYLNDPHDVTLTCKVNGQVKQNASSSNMLHKIPEIVSYLSEMITLLPGDVILTGTPAGV 253
                D     L+  +NG+++Q  ++ +M+  I  ++SY+S   TL  GD++LTGTP GV
Sbjct: 139 VAEFGDAQQADLSLTINGEIRQQGNTRDMITPIIPLISYMSRFFTLRAGDIVLTGTPQGV 198

Query: 254 G 254
           G
Sbjct: 199 G 199


>1nkq_A Hypothetical 28.8 kDa protein in PSD1-SKO1 intergenic region;
           dimer, PSI, protein structure initiative; 2.20A
           {Saccharomyces cerevisiae} SCOP: d.177.1.1
          Length = 259

 Score =  212 bits (543), Expect = 5e-69
 Identities = 68/216 (31%), Positives = 103/216 (47%), Gaps = 40/216 (18%)

Query: 79  ITRPDKILCIALNYKDHCDEQNKTYPETPFFFNKFPSTIVGPFSEVTCPTNV-------- 130
           +    KI+CI  NY  H  E N + P+ PFFF K  S+IV P S     T          
Sbjct: 6   LKAARKIICIGRNYAAHIKELNNSTPKQPFFFLKPTSSIVTPLSSSLVKTTRPANSTFNG 65

Query: 131 ---------------TRYLDWEVELAVIIGKKTRDV---KPHEAMESVF---------ES 163
                             +  E+ELA+I+ K   +V   KP E  +S+            
Sbjct: 66  LNEDGTNPGPIFIPRGVKVHHEIELALIVSKHLSNVTKMKPEEVYDSISGVALALDLTAR 125

Query: 164 DWQ-KSSRNGGQWLFAKSLDTFCPLGPSVVMKEYLNDPH----DVTLTCKVNGQVKQNAS 218
           + Q ++ + G  W  +K  DTF P+   V  +++ +          + C VNGQ++Q+  
Sbjct: 126 NVQDEAKKKGLPWTISKGFDTFMPISAIVSREKFSSYKSNLQDIFRVKCSVNGQLRQDGG 185

Query: 219 SSNMLHKIPEIVSYLSEMITLLPGDVILTGTPAGVG 254
           ++ MLH + +I+ ++S MI+L PGD+ILTGTPAGVG
Sbjct: 186 TNLMLHPLHKILQHISTMISLEPGDIILTGTPAGVG 221


>3lzk_A Fumarylacetoacetate hydrolase family protein; structural genomics,
           PSI-2, protein structure initiative; 1.90A
           {Sinorhizobium meliloti}
          Length = 359

 Score =  192 bits (489), Expect = 7e-60
 Identities = 45/283 (15%), Positives = 93/283 (32%), Gaps = 33/283 (11%)

Query: 1   MRFVQYKPLNGNGNTPQRLGVQLERNGEIINLSSVDSSMPNNLVQFLEGGPELLEKAKRM 60
           M+    K    +     +L V  +       +  +  ++   L  +   GP L   A+ +
Sbjct: 22  MKLATLK----DSTRDGKLVVVSKDLTRCSEVGHIARTLQAALDDWAHAGPRLERVAEGI 77

Query: 61  VSECKCMVKLSEVELLPPITRPDKILCIALNYKDHCD--------EQNKTYPETPFFFNK 112
            +  +  ++  E +   P+ R  +       Y +H +        E   ++   P  +  
Sbjct: 78  ETGAQPTMRFHEHDAASPLPRAFQW-ADGSAYVNHVELVRKARNAEMPASFWTDPLIYQG 136

Query: 113 FPSTIVGPFSEVTCPTNVTRYLDWEVELAVIIGKKTRDVKPHEAMESVF---------ES 163
              + +GP   +    +    +D E E AVI+          EA  ++            
Sbjct: 137 GSDSFLGPRDPILMADDAWG-IDMEGEAAVIVDDVPMGATLDEAKAAIRLVMLVNDVSLR 195

Query: 164 DWQKS-SRNGGQWLFAKSLDTFCPLGPSVVMKEYLNDPHD-----VTLTCKVNGQVKQNA 217
                    G  +  +K    F P+    V  E L +  D     + L   +NG+    A
Sbjct: 196 GLIPGELAKGFGFYQSKPSSAFSPVA---VTPEELGEAWDGGKLHLPLHVDLNGEPFGRA 252

Query: 218 S-SSNMLHKIPEIVSYLSEMITLLPGDVILTGTPAGVGVFRKP 259
           +   +M    P+++ + +    L  G +I +GT +        
Sbjct: 253 NAGIDMTFDFPQLIVHAARTRPLSAGTIIGSGTVSNKLEGGPG 295


>1hyo_A Fumarylacetoacetate hydrolase; beta-sandwich roll; HET: HBU; 1.30A
           {Mus musculus} SCOP: b.34.8.1 d.177.1.1 PDB: 1qcn_A
           2hzy_A* 1qco_A 1qqj_A
          Length = 421

 Score =  105 bits (263), Expect = 2e-26
 Identities = 42/252 (16%), Positives = 80/252 (31%), Gaps = 65/252 (25%)

Query: 66  CMVKLSEVELLPPITRPD---------KILCIALNYKDHCDEQNKTYPETPFFFNKFPST 116
                +   +  P T  D             + + ++   +     +   P  ++   S+
Sbjct: 108 AFTSQASATMHLPATIGDYTDFYSSRQHATNVGIMFRGKENALLPNWLHLPVGYHGRASS 167

Query: 117 IVGPFSEVTCPT-------------NVTRYLDWEVELAVIIGKKTRDVKPH---EAMESV 160
           IV   + +  P                 R LD E+E+A  +G   R  +P    +A E +
Sbjct: 168 IVVSGTPIRRPMGQMRPDNSKPPVYGACRLLDMELEMAFFVGPGNRFGEPIPISKAHEHI 227

Query: 161 F---------ESDWQKSSRNGGQWLFAKSLDTFCPLGPSVVMKE---------------- 195
           F           D Q+           KS  T   + P VV  +                
Sbjct: 228 FGMVLMNDWSARDIQQWEYVPLGPFLGKSFGT--TISPWVVPMDALMPFVVPNPKQDPKP 285

Query: 196 --YLNDP----HDVTLTCKVNGQ------VKQNASSSNMLHKIPEIVSYLS-EMITLLPG 242
             YL        D+ L+  + G+          ++  +M   + + +++ S     L PG
Sbjct: 286 LPYLCHSQPYTFDINLSVSLKGEGMSQAATICRSNFKHMYWTMLQQLTHHSVNGCNLRPG 345

Query: 243 DVILTGTPAGVG 254
           D++ +GT +G  
Sbjct: 346 DLLASGTISGSD 357


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 39.3 bits (91), Expect = 0.001
 Identities = 40/235 (17%), Positives = 71/235 (30%), Gaps = 86/235 (36%)

Query: 74  ELLPPITRPDKILCIALNYKDHCDEQNKTYPETPFFFNKFPSTIVGPFS----------- 122
           EL+      +K+    LN  +  +  + T P+  +       +I  P S           
Sbjct: 197 ELIRTTLDAEKVFTQGLNILEWLENPSNT-PDKDYL-----LSI--PISCPLIGVIQLAH 248

Query: 123 -EVTC------PTNVTRYLDW------EVELAVIIGKKTRDVKPHEAMESVFESDWQKSS 169
             VT       P  +  YL         +  AV I           A    +ES +  S 
Sbjct: 249 YVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAI-----------AETDSWES-FFVSV 296

Query: 170 RNGGQWLF---AKSLDTF--CPLGPSVVMKEYLNDPHDVTLTCKVNGQVKQNASSSNMLH 224
           R     LF    +  + +    L PS++                 N +       S ML 
Sbjct: 297 RKAITVLFFIGVRCYEAYPNTSLPPSILED------------SLENNE----GVPSPMLS 340

Query: 225 ----KIPEIVSYLSEMITLLPGD-------------VILTGTPA---GVGV-FRK 258
                  ++  Y+++  + LP               ++++G P    G+ +  RK
Sbjct: 341 ISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRK 395



 Score = 34.6 bits (79), Expect = 0.034
 Identities = 45/289 (15%), Positives = 80/289 (27%), Gaps = 135/289 (46%)

Query: 4   VQYKPLNGNGN-TPQRLGV------QLER-----NGEI-----INLSSVDSSMPNNLVQF 46
           ++    N  G  +P  L +      Q++      N  +     + +S V+     NLV  
Sbjct: 324 LEDSLENNEGVPSPM-LSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNG--AKNLV-- 378

Query: 47  LEGGPELLEKAKRMVSECKCMVKLSEVELLPPITRPDKILCIALNYKDHCDEQNKTYPET 106
           + G P+ L      + + K                P  +            +Q++     
Sbjct: 379 VSGPPQSLYGLNLTLRKAKA---------------PSGL------------DQSRI---- 407

Query: 107 PF------FFNKF-PSTIVGPFSEVTCPTNVTRYLDWEVELAVIIGKKTRDVKPHEAMES 159
           PF      F N+F P         V  P + +  L                     A + 
Sbjct: 408 PFSERKLKFSNRFLP---------VASPFH-SHLLV-------------------PASDL 438

Query: 160 VFESDWQKSSRNGGQWLFAKSLDTFCPLGPSVVMKEYLNDPHDVTLTCKVNGQVKQNASS 219
           + +       +N   +  AK +    P+        Y  D  D        G   +  S 
Sbjct: 439 INKDLV----KNNVSFN-AKDIQ--IPV--------Y--DTFD--------GSDLRVLSG 473

Query: 220 SNMLHKIPEIVSYLSEMITLLPGD-----------VIL--TGTPAGVGV 255
           S        I   + + I  LP             ++    G  +G+GV
Sbjct: 474 S--------ISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGV 514


>2eb4_A 2-OXO-HEPT-3-ENE-1,7-dioate hydratase; lyase; 1.60A {Escherichia
           coli} PDB: 2eb5_A 2eb6_A
          Length = 267

 Score = 34.8 bits (80), Expect = 0.018
 Identities = 9/59 (15%), Positives = 25/59 (42%), Gaps = 5/59 (8%)

Query: 199 DPHDVTLTCKVNGQVKQNASSS----NMLHKIPEIVSYLSEM-ITLLPGDVILTGTPAG 252
           D   ++     NG +++   ++    +  + +  + + L+   + L  G +IL G+   
Sbjct: 184 DLRWISALMYRNGVIEETGVAAGVLNHPANGVAWLANKLAPYDVQLEAGQIILGGSFTR 242


>2wqt_A 2-keto-4-pentenoate hydratase; lyase, dodecahedral form, aromatic
           hydrocarbons catabolism; 2.80A {Escherichia coli} PDB:
           1sv6_A
          Length = 270

 Score = 34.7 bits (80), Expect = 0.018
 Identities = 14/71 (19%), Positives = 22/71 (30%), Gaps = 6/71 (8%)

Query: 187 LGPSVVMKEYLNDPHDVTLTCKVNGQVKQNASSSNMLHKIPEIVSYLSEM-----ITLLP 241
           +G        L D  +  +    N +   +   S  L        +L+         L  
Sbjct: 167 IGGPAQRPAGL-DLKNCAMKMTRNNEEVSSGRGSECLGHPLNAAVWLARKMASLGEPLRT 225

Query: 242 GDVILTGTPAG 252
           GD+ILTG    
Sbjct: 226 GDIILTGALGP 236


>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex,
           oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi}
           SCOP: c.2.1.2 PDB: 1mxf_A*
          Length = 276

 Score = 30.3 bits (69), Expect = 0.62
 Identities = 6/22 (27%), Positives = 10/22 (45%)

Query: 20  GVQLERNGEIINLSSVDSSMPN 41
           G    RN  ++NL    + +P 
Sbjct: 155 GAWRSRNLSVVNLCDAMTDLPL 176


>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
           PSI-biology, NEW YORK structural genomi research
           consortium, nysgrc; 2.40A {Sinorhizobium meliloti}
          Length = 267

 Score = 29.8 bits (68), Expect = 0.82
 Identities = 6/20 (30%), Positives = 11/20 (55%)

Query: 22  QLERNGEIINLSSVDSSMPN 41
           +L   G IIN+S+    + +
Sbjct: 150 RLRVGGRIINMSTSQVGLLH 169


>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain
           dehydrogenase/reductase, trypanosomatid, pterin salvage,
           drug resistance; HET: NAP FE1; 2.61A {Leishmania major}
           SCOP: c.2.1.2
          Length = 328

 Score = 28.9 bits (65), Expect = 1.4
 Identities = 5/17 (29%), Positives = 8/17 (47%)

Query: 25  RNGEIINLSSVDSSMPN 41
            N  IIN+    ++ P 
Sbjct: 212 TNYSIINMVDAMTNQPL 228


>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain
           dehydrogenase, methotrexate resistance, oxidoreductase;
           HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2
           PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A*
           2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*
          Length = 291

 Score = 28.9 bits (65), Expect = 1.4
 Identities = 5/17 (29%), Positives = 8/17 (47%)

Query: 25  RNGEIINLSSVDSSMPN 41
            N  IIN+    ++ P 
Sbjct: 175 TNYSIINMVDAMTNQPL 191


>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase,
           oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei
           brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A*
           3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A*
           3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A*
           3jq6_A* ...
          Length = 288

 Score = 28.8 bits (65), Expect = 1.6
 Identities = 5/18 (27%), Positives = 6/18 (33%)

Query: 24  ERNGEIINLSSVDSSMPN 41
             N  I+NL       P 
Sbjct: 171 SSNLSIVNLCDAMVDQPC 188


>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural
           genomics, putative 3-oxoacyl-(acyl carrier protei
           reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus
           anthracis str}
          Length = 255

 Score = 28.7 bits (65), Expect = 1.8
 Identities = 8/28 (28%), Positives = 13/28 (46%)

Query: 14  NTPQRLGVQLERNGEIINLSSVDSSMPN 41
              Q+   +L  N  IIN+SS  + +  
Sbjct: 128 FIIQQALSRLRDNSRIINISSAATRISL 155


>3ice_A Transcription termination factor RHO; transcription, ATPase,
           hexamer, helicase, RNA, RECA, OB fold ATP-binding,
           hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli
           k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
          Length = 422

 Score = 28.7 bits (65), Expect = 1.9
 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 5/28 (17%)

Query: 54  LEKAKRMVSECKCMVKLSEVELLPPITR 81
           +EKAKR+V E K  V    + LL  ITR
Sbjct: 250 IEKAKRLV-EHKKDV----IILLDSITR 272


>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics,
           PSI-2, dehydrogenase, protein structure initiative;
           2.30A {Oenococcus oeni psu-1}
          Length = 262

 Score = 28.6 bits (65), Expect = 2.0
 Identities = 4/20 (20%), Positives = 9/20 (45%)

Query: 22  QLERNGEIINLSSVDSSMPN 41
            +  NG II +++   +   
Sbjct: 136 HMNPNGHIITIATSLLAAYT 155


>3pic_A CIP2; alpha/beta hydrolase fold, glucuronoyl esterase, carbohydrat
           esterase family 15 (CE-15), N-linked glycosylation,
           secrete hydrolase; HET: NAG; 1.90A {Hypocrea jecorina}
          Length = 375

 Score = 28.7 bits (63), Expect = 2.4
 Identities = 9/59 (15%), Positives = 19/59 (32%), Gaps = 2/59 (3%)

Query: 82  PDKILCIALNYKDHCDEQNKTYPETPFFFNKF--PSTIVGPFSEVTCPTNVTRYLDWEV 138
            D +    +    HC   +    +   F  KF    +      +     N ++++DW  
Sbjct: 313 SDHMGYSQIGAHAHCAFPSNQQSQLTAFVQKFLLGQSTNTAIFQSDFSANQSQWIDWTT 371


>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA
           capture mechanism, ATP-binding, hydrolase,
           nucleotide-binding, RN binding; 2.35A {Thermotoga
           maritima}
          Length = 427

 Score = 28.4 bits (64), Expect = 2.5
 Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 5/28 (17%)

Query: 54  LEKAKRMVSECKCMVKLSEVELLPPITR 81
           LE AKR+V E    V    V LL  +TR
Sbjct: 251 LEMAKRLV-EFNYDV----VILLDSLTR 273


>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid
           synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH
           binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus
           subtilis} PDB: 3oic_A*
          Length = 258

 Score = 27.9 bits (63), Expect = 2.8
 Identities = 5/17 (29%), Positives = 9/17 (52%)

Query: 25  RNGEIINLSSVDSSMPN 41
             G I+++SS+ S    
Sbjct: 132 GGGHIVSISSLGSIRYL 148


>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide
           catalysis, enantioselectivity, lyase; HET: RNO; 1.70A
           {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A
           1px0_A* 1pwx_A* 1zo8_A*
          Length = 254

 Score = 27.9 bits (63), Expect = 3.0
 Identities = 5/17 (29%), Positives = 9/17 (52%)

Query: 25  RNGEIINLSSVDSSMPN 41
           ++G II ++S     P 
Sbjct: 123 KSGHIIFITSATPFGPW 139


>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site
           inhibitor complex, dinucleotide binding fold,
           oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea}
           SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*
          Length = 283

 Score = 28.0 bits (63), Expect = 3.0
 Identities = 5/21 (23%), Positives = 8/21 (38%)

Query: 22  QLERNGEIINLSSVDSSMPNN 42
            LE  G +I + S+       
Sbjct: 152 HLEIGGRLILMGSITGQAKAV 172


>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein
           structure initiative, PSI-biology; 2.50A {Sinorhizobium
           meliloti}
          Length = 280

 Score = 27.9 bits (63), Expect = 3.0
 Identities = 6/17 (35%), Positives = 11/17 (64%)

Query: 25  RNGEIINLSSVDSSMPN 41
            +  IIN++SV + M +
Sbjct: 162 ASRSIINITSVSAVMTS 178


>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase;
           protein-NADPH-active site inhibitor complex,
           oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A
           {Magnaporthe grisea} SCOP: c.2.1.2
          Length = 274

 Score = 27.9 bits (63), Expect = 3.0
 Identities = 7/21 (33%), Positives = 9/21 (42%)

Query: 22  QLERNGEIINLSSVDSSMPNN 42
              R G II  SS+ + M   
Sbjct: 144 HCRRGGRIILTSSIAAVMTGI 164


>2zzv_A ABC transporter, solute-binding protein; periplasmic substrate
           binding protein, calcium, lactate, trap transporter,
           transport protein; 1.40A {Thermus thermophilus} PDB:
           2zzw_A 2zzx_A
          Length = 361

 Score = 28.2 bits (63), Expect = 3.3
 Identities = 3/17 (17%), Positives = 5/17 (29%)

Query: 247 TGTPAGVGVFRKPIESL 263
                 +   +KPI   
Sbjct: 153 VQHDLNIIHSKKPIRRF 169


>3fg7_A Villin-1; actin binding protein, gelsolin, actin capping,
           actin-binding, calcium, cytoplasm, cytoskeleton,
           structural protein; 2.00A {Homo sapiens}
          Length = 398

 Score = 27.9 bits (61), Expect = 3.5
 Identities = 15/78 (19%), Positives = 28/78 (35%), Gaps = 6/78 (7%)

Query: 91  NYKDHCDEQNKTYPETPFFFN------KFPSTIVGPFSEVTCPTNVTRYLDWEVELAVII 144
            Y +    Q +    TP  F       +F +T +  F++     +    LD   ++   I
Sbjct: 267 PYANTKRLQEENLVITPRLFECSNKTGRFLATEIPDFNQDDLEEDDVFLLDVWDQVFFWI 326

Query: 145 GKKTRDVKPHEAMESVFE 162
           GK   + +   A  +  E
Sbjct: 327 GKHANEEEKKAAATTAQE 344


>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase
           domain alternation confo change; 2.00A {Alcaligenes SP}
           SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X*
           2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
          Length = 504

 Score = 27.9 bits (63), Expect = 3.6
 Identities = 4/13 (30%), Positives = 4/13 (30%)

Query: 188 GPSVVMKEYLNDP 200
                   YLN P
Sbjct: 357 ASDSAFVGYLNQP 369


>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin,
           rossman fold, chorismate metabolism, short-CHA
           oxidoreductase, tetramer; 2.00A {Escherichia coli}
          Length = 250

 Score = 27.5 bits (62), Expect = 4.6
 Identities = 5/17 (29%), Positives = 9/17 (52%)

Query: 25  RNGEIINLSSVDSSMPN 41
           R G I+ ++S  +  P 
Sbjct: 124 RGGAIVTVASDAAHTPR 140


>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein,
           unknown function, structural genomics, MCSG, protein
           structure initiative; 2.00A {Saccharomyces cerevisiae}
          Length = 254

 Score = 27.2 bits (61), Expect = 4.6
 Identities = 5/18 (27%), Positives = 10/18 (55%)

Query: 24  ERNGEIINLSSVDSSMPN 41
           + NG ++ +SS   +M  
Sbjct: 127 KTNGNVVFVSSDACNMYF 144


>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
           PSI-biology, NEW YORK structural genomi research
           consortium, nysgrc; 2.50A {Sinorhizobium meliloti}
          Length = 281

 Score = 27.2 bits (61), Expect = 4.8
 Identities = 8/20 (40%), Positives = 10/20 (50%)

Query: 22  QLERNGEIINLSSVDSSMPN 41
           Q  R G IIN  S+ +  P 
Sbjct: 161 QTPRGGRIINNGSISAQTPR 180


>3c68_A Uncharacterized protein YGJK; GH63, processing alpha-glucosidase,
           alpha/alpha barrel, hydrolase; HET: BMA; 1.50A
           {Escherichia coli} PDB: 3c67_A* 2ds3_A* 3c69_A* 3d3i_A
          Length = 761

 Score = 27.5 bits (60), Expect = 5.1
 Identities = 8/35 (22%), Positives = 18/35 (51%)

Query: 21  VQLERNGEIINLSSVDSSMPNNLVQFLEGGPELLE 55
           + + ++G+ ++ +    S+P  LVQ L      +E
Sbjct: 75  LTVWQDGKKVDFTLEAYSIPGALVQKLTAKDVQVE 109


>1qtn_B Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease,
           hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens}
           SCOP: c.17.1.1 PDB: 3kjn_B* 3kjq_B* 2y1l_B 1f9e_B*
           1qdu_B*
          Length = 95

 Score = 25.9 bits (57), Expect = 6.6
 Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 1/43 (2%)

Query: 192 VMKEYLNDPHDV-TLTCKVNGQVKQNASSSNMLHKIPEIVSYL 233
            ++E      D+ T+  +VN +V       NM  ++P+    L
Sbjct: 44  SLRERCPRGDDILTILTEVNYEVSNKDDKKNMGKQMPQPTFTL 86


>1xq1_A Putative tropinone reducatse; structural genomics, protein
           structure initiative, CESG, AT1 reductively methylated
           protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB:
           2q45_A
          Length = 266

 Score = 26.7 bits (60), Expect = 7.0
 Identities = 5/17 (29%), Positives = 8/17 (47%)

Query: 25  RNGEIINLSSVDSSMPN 41
             G II +SS+   +  
Sbjct: 142 GCGNIIFMSSIAGVVSA 158


>3fg6_A Adseverin, scinderin; C-terminus of adseverin, actin capping,
           actin-binding, cytos phosphoprotein, actin-binding
           protein; 3.00A {Homo sapiens}
          Length = 371

 Score = 27.1 bits (59), Expect = 7.1
 Identities = 14/79 (17%), Positives = 31/79 (39%), Gaps = 7/79 (8%)

Query: 91  NYKDHCDEQNKTYPETPFFF------NKFPST-IVGPFSEVTCPTNVTRYLDWEVELAVI 143
           +Y+     + +     P  +       +F    I G F++     +    LD   ++ + 
Sbjct: 254 DYQTSPLLETQAEDHPPRLYGCSNKTGRFVIEEIPGEFTQDDLAEDDVMLLDAWEQIFIW 313

Query: 144 IGKKTRDVKPHEAMESVFE 162
           IGK   +V+  E+++S   
Sbjct: 314 IGKDANEVEKKESLKSAKM 332


>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics
           center for infectious disease, ssgcid, oxidoreductase,
           structural genomics; 2.20A {Brucella melitensis}
          Length = 256

 Score = 26.7 bits (60), Expect = 7.9
 Identities = 6/17 (35%), Positives = 9/17 (52%)

Query: 25  RNGEIINLSSVDSSMPN 41
             G I+N+SS+     N
Sbjct: 138 GGGAILNISSMAGENTN 154


>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase,
           oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium}
           SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A
           3aut_A* 3auu_A*
          Length = 261

 Score = 26.7 bits (60), Expect = 8.5
 Identities = 7/15 (46%), Positives = 10/15 (66%)

Query: 27  GEIINLSSVDSSMPN 41
           G +IN+SSV   +P 
Sbjct: 138 GTVINMSSVHEKIPW 152


>3ewk_A Sensor protein; PAS domain, alpha/beta fold, kinase,
           phosphoprotein, transfe flavoprotein; HET: FAD; 2.34A
           {Methylococcus capsulatus}
          Length = 227

 Score = 26.2 bits (58), Expect = 9.2
 Identities = 8/33 (24%), Positives = 14/33 (42%), Gaps = 1/33 (3%)

Query: 143 IIGKKTRDVKPHEAMESVFESDWQKSSRNGGQW 175
           ++G+  R V      ++     W+  SR G  W
Sbjct: 29  LVGQDHRIVNSGYHGKAYIRDMWRTISR-GNIW 60


>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain
           dehydrogenase/reductase family, lyase; 2.00A
           {Arthrobacter SP}
          Length = 244

 Score = 26.3 bits (59), Expect = 9.3
 Identities = 3/17 (17%), Positives = 6/17 (35%)

Query: 25  RNGEIINLSSVDSSMPN 41
               +I ++S     P 
Sbjct: 125 GGASVIFITSSVGKKPL 141


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 26.1 bits (56), Expect = 9.4
 Identities = 8/38 (21%), Positives = 14/38 (36%), Gaps = 13/38 (34%)

Query: 55 EKAKRMVSECKCMVKL-SEVELLPPITRPDKILCIALN 91
          EK        K   KL + ++L    + P     +A+ 
Sbjct: 18 EK-----QALK---KLQASLKLYADDSAP----ALAIK 43


>3ram_A HMRA protein; two-domain, catalytic (alpha-beta-alpha) motif,
           tetramerisat (alpha,beta,BETA,alpha), endoprotease,
           hydrolase; 2.70A {Staphylococcus aureus}
          Length = 394

 Score = 26.5 bits (59), Expect = 9.8
 Identities = 7/19 (36%), Positives = 12/19 (63%)

Query: 233 LSEMITLLPGDVILTGTPA 251
           L ++I  + G V++ G PA
Sbjct: 109 LKQVIDQIGGKVVVLGCPA 127


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.317    0.135    0.407 

Gapped
Lambda     K      H
   0.267   0.0767    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,008,610
Number of extensions: 227567
Number of successful extensions: 943
Number of sequences better than 10.0: 1
Number of HSP's gapped: 894
Number of HSP's successfully gapped: 52
Length of query: 264
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 172
Effective length of database: 4,133,061
Effective search space: 710886492
Effective search space used: 710886492
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (25.3 bits)