RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5683
(264 letters)
>d1sawa_ d.177.1.1 (A:) FAHD1 (Flj36880, YISKL) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 217
Score = 161 bits (409), Expect = 5e-50
Identities = 68/195 (34%), Positives = 98/195 (50%), Gaps = 16/195 (8%)
Query: 78 PITR----PDKILCIALNYKDHCDEQNKTYPETPFFFNKFPSTIVGPFSEVTCPTNVTRY 133
P++R I+C+ NY DH E P F K + S + P
Sbjct: 2 PLSRFWEWGKNIVCVGRNYADHVREMRSAVLSEPVLFLKPSTAYAPEGSPILMPAYTRN- 60
Query: 134 LDWEVELAVIIGKKTRDVKPHEAME---------SVFESDWQ-KSSRNGGQWLFAKSLDT 183
L E+EL V++GK+ R V AM+ + D Q + + G W AKS
Sbjct: 61 LHHELELGVVMGKRCRAVPEAAAMDYVGGYALCLDMTARDVQDECKKKGLPWTLAKSFTA 120
Query: 184 FCPLGPSVVMKEYLNDPHDVTLTCKVNGQVKQNASSSNMLHKIPEIVSYLSEMITLLPGD 243
CP+ V KE + DPH + L KVNG+++Q +S+M+ IP I+SY+S++ITL GD
Sbjct: 121 SCPVSA-FVPKEKIPDPHKLKLWLKVNGELRQEGETSSMIFSIPYIISYVSKIITLEEGD 179
Query: 244 VILTGTPAGVGVFRK 258
+ILTGTP GVG ++
Sbjct: 180 IILTGTPKGVGPVKE 194
>d1gtta2 d.177.1.1 (A:214-429) 4-hydroxyphenylacetate degradation
bifunctional isomerase/decarboxylase HpcE {Escherichia
coli [TaxId: 562]}
Length = 216
Score = 143 bits (362), Expect = 5e-43
Identities = 64/187 (34%), Positives = 98/187 (52%), Gaps = 9/187 (4%)
Query: 76 LPPITRPD-KILCIALNYKDHCDEQNKTYPETPFFFNKFPSTIVGPFSEVTCPTNVTRYL 134
P + P + + LNY DH E PE P F K P+T+ G P N Y+
Sbjct: 2 FPTLPHPHGTLFALGLNYADHASELEFKPPEEPLVFLKAPNTLTGDNQTSVRPNN-IEYM 60
Query: 135 DWEVELAVIIGKKTRDVKPHEAMESVFESD-------WQKSSRNGGQWLFAKSLDTFCPL 187
+E EL V+IGK+ R+V +AM+ V L KS D P+
Sbjct: 61 HYEAELVVVIGKQARNVSEADAMDYVAGYTVCNDYAIRDYLENYYRPNLRVKSRDGLTPM 120
Query: 188 GPSVVMKEYLNDPHDVTLTCKVNGQVKQNASSSNMLHKIPEIVSYLSEMITLLPGDVILT 247
++V KE + DPH++TL VNG+++Q ++++++ +P +++YLSE +TL PGD+I T
Sbjct: 121 LSTIVPKEAIPDPHNLTLRTFVNGELRQQGTTADLIFSVPFLIAYLSEFMTLNPGDMIAT 180
Query: 248 GTPAGVG 254
GTP G+
Sbjct: 181 GTPKGLS 187
>d1nkqa_ d.177.1.1 (A:) Hypothetical protein Ynl168c {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 257
Score = 142 bits (359), Expect = 5e-42
Identities = 64/216 (29%), Positives = 99/216 (45%), Gaps = 40/216 (18%)
Query: 79 ITRPDKILCIALNYKDHCDEQNKTYPETPFFFNKFPSTIVGPFSEVTCPTNV-------- 130
+ KI+CI NY H E N + P+ PFFF K S+IV P S T
Sbjct: 5 LKAARKIICIGRNYAAHIKELNNSTPKQPFFFLKPTSSIVTPLSSSLVKTTRPANSTFNG 64
Query: 131 ---------------TRYLDWEVELAVIIGKKTRDVKP-------------HEAMESVFE 162
+ E+ELA+I+ K +V A++
Sbjct: 65 LNEDGTNPGPIFIPRGVKVHHEIELALIVSKHLSNVTKMKPEEVYDSISGVALALDLTAR 124
Query: 163 SDWQKSSRNGGQWLFAKSLDTFCPLGPSVVMKEYLND----PHDVTLTCKVNGQVKQNAS 218
+ ++ + G W +K DTF P+ V +++ + + C VNGQ++Q+
Sbjct: 125 NVQDEAKKKGLPWTISKGFDTFMPISAIVSREKFSSYKSNLQDIFRVKCSVNGQLRQDGG 184
Query: 219 SSNMLHKIPEIVSYLSEMITLLPGDVILTGTPAGVG 254
++ MLH + +I+ ++S MI+L PGD+ILTGTPAGVG
Sbjct: 185 TNLMLHPLHKILQHISTMISLEPGDIILTGTPAGVG 220
>d1nr9a_ d.177.1.1 (A:) Putative isomerase YcgM {Escherichia coli
[TaxId: 562]}
Length = 221
Score = 131 bits (331), Expect = 3e-38
Identities = 59/192 (30%), Positives = 93/192 (48%), Gaps = 12/192 (6%)
Query: 78 PITRPD-KILCIALNYKDHCDEQNKTYPETPFFFNKFPSTIVGPFSEVTCPTNVTRYLDW 136
+ P K++C+ NY H E PE P F K + + + P++ +
Sbjct: 12 LLDYPVSKVVCVGSNYAKHIKEMGSAVPEEPVLFIKPETALCDLRQPLAIPSD-FGSVHH 70
Query: 137 EVELAVIIGKKTRDVKPHEAMESVFES----------DWQKSSRNGGQWLFAKSLDTFCP 186
EVELAV+IG R +++ K + G W AK+ D CP
Sbjct: 71 EVELAVLIGATLRQATEEHVRKAIAGYGVALDLTLRDVQGKMKKAGQPWEKAKAFDNSCP 130
Query: 187 LGPSVVMKEYLNDPHDVTLTCKVNGQVKQNASSSNMLHKIPEIVSYLSEMITLLPGDVIL 246
L + E+ DP + TL+ VNG+ +Q ++++M+HKI +++Y+S+ TL GDV+L
Sbjct: 131 LSGFIPAAEFTGDPQNTTLSLSVNGEQRQQGTTADMIHKIVPLIAYMSKFFTLKAGDVVL 190
Query: 247 TGTPAGVGVFRK 258
TGTP GVG +
Sbjct: 191 TGTPDGVGPLQS 202
>d1hyoa2 d.177.1.1 (A:119-416) Fumarylacetoacetate hydrolase, FAH,
C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 298
Score = 110 bits (275), Expect = 3e-29
Identities = 33/221 (14%), Positives = 69/221 (31%), Gaps = 56/221 (25%)
Query: 88 IALNYKDHCDEQNKTYPETPFFFNKFPSTIVGPFSEVTCPTNV-------------TRYL 134
+ + ++ + + P ++ S+IV + + P R L
Sbjct: 19 VGIMFRGKENALLPNWLHLPVGYHGRASSIVVSGTPIRRPMGQMRPDNSKPPVYGACRLL 78
Query: 135 DWEVELAVIIGK---KTRDVKPHEAMESVF---------ESDWQKSSRNGGQWLFAKSLD 182
D E+E+A +G + +A E +F D Q+ K
Sbjct: 79 DMELEMAFFVGPGNRFGEPIPISKAHEHIFGMVLMNDWSARDIQQWEYVPLGPFLGK--S 136
Query: 183 TFCPLGPSVVMKEYL----------------------NDPHDVTLTCKVNGQVKQN---- 216
+ P VV + L D+ L+ + G+
Sbjct: 137 FGTTISPWVVPMDALMPFVVPNPKQDPKPLPYLCHSQPYTFDINLSVSLKGEGMSQAATI 196
Query: 217 --ASSSNMLHKIPEIVSY-LSEMITLLPGDVILTGTPAGVG 254
++ +M + + +++ L PGD++ +GT +G
Sbjct: 197 CRSNFKHMYWTMLQQLTHHSVNGCNLRPGDLLASGTISGSD 237
>d1gtta1 d.177.1.1 (A:1-213) 4-hydroxyphenylacetate degradation
bifunctional isomerase/decarboxylase HpcE {Escherichia
coli [TaxId: 562]}
Length = 213
Score = 101 bits (251), Expect = 1e-26
Identities = 39/180 (21%), Positives = 75/180 (41%), Gaps = 11/180 (6%)
Query: 84 KILCIALNYKDHCDEQN--------KTYPETPFFFNKFPSTIVGPFSEVTCPTNVTRYLD 135
I +ALN++ D K P+T +F K +T++G + P +
Sbjct: 4 TIFAVALNHRSQLDAWQEAFQQSPYKAPPKTAVWFIKPRNTVIGCGEPI--PFPQGEKVL 61
Query: 136 WEVELAVIIGKKTRDVKPHEAMESVFE-SDWQKSSRNGGQWLFAKSLDTFCPLGPSVVMK 194
+A+I+GK V+ +A E + + S + +
Sbjct: 62 SGATVALIVGKTATKVREEDAAEYIAGYALANDVSLPEESFYRPAIKAKCRDGFCPIGET 121
Query: 195 EYLNDPHDVTLTCKVNGQVKQNASSSNMLHKIPEIVSYLSEMITLLPGDVILTGTPAGVG 254
L++ ++T+ ++NG+ + +++++ +++S LSE TL PGD IL GTP
Sbjct: 122 VALSNVDNLTIYTEINGRPADHWNTADLQRNAAQLLSALSEFATLNPGDAILLGTPQARV 181
>d1sv6a_ d.177.1.1 (A:) 2-keto-4-pentenoate hydratase MhpD
{Escherichia coli [TaxId: 562]}
Length = 261
Score = 63.1 bits (152), Expect = 2e-12
Identities = 24/164 (14%), Positives = 45/164 (27%), Gaps = 15/164 (9%)
Query: 105 ETPFFFNKFPSTIVGPFSEVTCPTNVTRYLDWEVELAVIIGKKTRDVKPHEAME------ 158
+ P F F G + + ++ E+ L + D+ E
Sbjct: 75 DQPDFGTLFADMCYGDNEIIPFSRVLQPRIEAEIALVLNRDLPATDITFDELYNAIEWVL 134
Query: 159 ---SVFESDWQKSSRNGGQWLFAKSLDTFCPLGPSVVMKEYLNDPHDVTLTCKVNGQVKQ 215
V S + S + + +G + D + + N +
Sbjct: 135 PALEVVGSRIRDWSIQFVDTVADNASCGVYVIGGPAQ-RPAGLDLKNCAMKMTRNNEEVS 193
Query: 216 NASSSNMLHKIPEIVSYLSEM-----ITLLPGDVILTGTPAGVG 254
+ S L +L+ L GD+ILTG +
Sbjct: 194 SGRGSECLGHPLNAAVWLARKMASLGEPLRTGDIILTGALGPMV 237
>d1byra_ d.136.1.1 (A:) Nuclease Nuc {Salmonella typhimurium [TaxId:
90371]}
Length = 152
Score = 29.2 bits (64), Expect = 0.27
Identities = 18/96 (18%), Positives = 31/96 (32%), Gaps = 6/96 (6%)
Query: 75 LLPPITRPDKILCIALNYKDHCDEQNKTYPETPFFFNKFPSTIVGPFSEVTCPTNVT-RY 133
++ + A+NY + +T P +K IV + T N T
Sbjct: 58 VIDERGNTGRASIAAMNYIANSGIPLRTDSNFPIQHDKV--IIVDNVTVETGSFNFTKAA 115
Query: 134 LDWEVELAVIIGKKTRDVKPHEAMESVFESDWQKSS 169
E AV+I K E+ ++ W +
Sbjct: 116 ETKNSENAVVI---WNMPKLAESFLEHWQDRWNQGR 148
>g1qtn.1 c.17.1.1 (A:,B:) Caspase-8 {Human (Homo sapiens) [TaxId:
9606]}
Length = 242
Score = 26.3 bits (57), Expect = 3.5
Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 192 VMKEYLNDPHDV-TLTCKVNGQVKQNASSSNMLHKIPEIVSYL 233
++E D+ T+ +VN +V NM ++P+ L
Sbjct: 191 SLRERCPRGDDILTILTEVNYEVSNKDDKKNMGKQMPQPTFTL 233
>d2z7fe1 b.47.1.2 (E:16-243) Elastase {Human (Homo sapiens) [TaxId:
9606]}
Length = 218
Score = 25.1 bits (53), Expect = 8.1
Identities = 8/69 (11%), Positives = 18/69 (26%), Gaps = 9/69 (13%)
Query: 76 LPPITRPDKILCIALNYKDHCDEQNKTYPETPFFFNKFPSTIVGPFSEVTCP-------- 127
+ +T + + + +P N I F C
Sbjct: 145 VTVVTSLCRRSNVCTLVRGRQAGVCFGDSGSPLVCNGLIHGIAS-FVRGGCASGLYPDAF 203
Query: 128 TNVTRYLDW 136
V ++++W
Sbjct: 204 APVAQFVNW 212
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.135 0.407
Gapped
Lambda K H
0.267 0.0484 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 995,212
Number of extensions: 45701
Number of successful extensions: 205
Number of sequences better than 10.0: 1
Number of HSP's gapped: 193
Number of HSP's successfully gapped: 16
Length of query: 264
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 180
Effective length of database: 1,254,276
Effective search space: 225769680
Effective search space used: 225769680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.4 bits)