BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5692
(98 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O60469|DSCAM_HUMAN Down syndrome cell adhesion molecule OS=Homo sapiens GN=DSCAM PE=1
SV=2
Length = 2012
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 42/69 (60%), Gaps = 5/69 (7%)
Query: 4 VVKQKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVV 63
V+++ Y + V + + GN AV +C IPS + YI V SW +D V++ +G ++++
Sbjct: 121 VLREPYTVRVE-DQKTMRGNVAVFKCIIPSSVEAYITVVSWEKDTVSLV----SGSRFLI 175
Query: 64 LSSGDLYVQ 72
S+G LY++
Sbjct: 176 TSTGALYIK 184
>sp|Q8VHZ8|DSCAM_RAT Down syndrome cell adhesion molecule homolog OS=Rattus norvegicus
GN=Dscam PE=1 SV=1
Length = 2013
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 42/69 (60%), Gaps = 5/69 (7%)
Query: 4 VVKQKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVV 63
V+++ Y + V + + GN AV +C IPS + Y+ V SW +D V++ +G ++++
Sbjct: 121 VLREPYTVRVE-DQKTMRGNVAVFKCIIPSSVEAYVTVVSWEKDTVSLV----SGSRFLI 175
Query: 64 LSSGDLYVQ 72
S+G LY++
Sbjct: 176 TSTGALYIK 184
>sp|Q9ERC8|DSCAM_MOUSE Down syndrome cell adhesion molecule homolog OS=Mus musculus
GN=Dscam PE=1 SV=1
Length = 2013
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 42/69 (60%), Gaps = 5/69 (7%)
Query: 4 VVKQKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVV 63
V+++ Y + V + + GN AV +C IPS + Y+ V SW +D V++ +G ++++
Sbjct: 121 VLREPYTVRVE-DQKTMRGNVAVFKCIIPSSVEAYVTVVSWEKDTVSLV----SGSRFLI 175
Query: 64 LSSGDLYVQ 72
S+G LY++
Sbjct: 176 TSTGALYIK 184
>sp|Q9VS29|DSCL_DROME Down syndrome cell adhesion molecule-like protein Dscam2
OS=Drosophila melanogaster GN=Dscam2 PE=2 SV=3
Length = 2074
Score = 45.8 bits (107), Expect = 7e-05, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Query: 4 VVKQKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-VNIYLNTDTGGKYV 62
VV Q Y+++V + G TA+LRC +P+++ E + V SW+ + + IY + GK+
Sbjct: 128 VVAQAYKVDVEV-LSAARGCTAILRCVVPTFVKELVRVVSWVHEPAIYIYPSLQGDGKFH 186
Query: 63 VLSSGDLYVQ 72
+L +G+L +
Sbjct: 187 LLPTGELLIH 196
>sp|Q4VA61|DSCL1_MOUSE Down syndrome cell adhesion molecule-like protein 1 homolog OS=Mus
musculus GN=Dscaml1 PE=1 SV=2
Length = 2053
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 4 VVKQKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVV 63
V ++ Y + V + + GN AV +C IPS + EY+ V SW +D V+I ++ +
Sbjct: 122 VFREPYTVRVE-DQRSMRGNVAVFKCLIPSSVQEYVSVVSWEKDTVSI----TPENRFFI 176
Query: 64 LSSGDLYV 71
S G LY+
Sbjct: 177 TSHGGLYI 184
>sp|Q8TD84|DSCL1_HUMAN Down syndrome cell adhesion molecule-like protein 1 OS=Homo sapiens
GN=DSCAML1 PE=1 SV=2
Length = 2053
Score = 42.7 bits (99), Expect = 6e-04, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 6/64 (9%)
Query: 4 VVKQKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNI-----YLNTDTG 58
V ++ Y + V + + GN AV +C IPS + EY+ V SW +D V+I + T G
Sbjct: 122 VFREPYTVRVE-DQRSMRGNVAVFKCLIPSSVQEYVSVVSWEKDTVSIIPEHRFFITYHG 180
Query: 59 GKYV 62
G Y+
Sbjct: 181 GLYI 184
>sp|Q75WD2|DNAJ_ACEP3 Chaperone protein DnaJ OS=Acetobacter pasteurianus (strain NBRC
3283 / LMG 1513 / CCTM 1153) GN=dnaJ PE=3 SV=2
Length = 380
Score = 33.1 bits (74), Expect = 0.48, Method: Composition-based stats.
Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 17/97 (17%)
Query: 16 EHNVILGNTAVLRCQIPSYMSEYII-------VTSWIQDDVNIYLNTDTG------GK-Y 61
EH + + A + C++P M++ + V + V I T TG GK +
Sbjct: 258 EHGIFQRDGANIYCRVPLRMAQAALGTEIEVPVIDGSRTKVKIPAGTQTGAHFRLRGKGF 317
Query: 62 VVLSS---GDLYVQIRLSITGNLSVKKMKVEEEEEKK 95
VL S GD+Y+Q+ + NLS ++ ++ EE EK+
Sbjct: 318 SVLRSTARGDMYIQVTVETPQNLSKRQRELLEEFEKE 354
>sp|Q9BWV1|BOC_HUMAN Brother of CDO OS=Homo sapiens GN=BOC PE=1 SV=1
Length = 1114
Score = 30.4 bits (67), Expect = 3.2, Method: Composition-based stats.
Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 13/69 (18%)
Query: 7 QKYEINVNYEHNVILGNTAVLRCQIPSYMSE----YIIVTSWIQDDVNIYLNTDTGGKYV 62
Q ++++V + V GNTAV+ C +P + Y + W++ + G Y+
Sbjct: 128 QDFKLDVQHVIEVDEGNTAVIACHLPESHPKAQVRYSVKQEWLE---------ASRGNYL 178
Query: 63 VLSSGDLYV 71
++ SG+L +
Sbjct: 179 IMPSGNLQI 187
>sp|Q6AZB0|BOC_MOUSE Brother of CDO OS=Mus musculus GN=Boc PE=1 SV=2
Length = 1110
Score = 29.6 bits (65), Expect = 5.7, Method: Composition-based stats.
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 7 QKYEINVNYEHNVILGNTAVLRCQIPSYMSE----YIIVTSWIQDDVNIYLNTDTGGKYV 62
Q ++++V + V GNTAV+ C +P + Y + W++ + YL +G +
Sbjct: 123 QDFKLDVQHVIEVDEGNTAVIACHLPESHPKAQVRYSVKQEWLEASRDNYLIMPSGNLQI 182
Query: 63 VLSS 66
V +S
Sbjct: 183 VNAS 186
>sp|Q5FSL4|DNAJ_GLUOX Chaperone protein DnaJ OS=Gluconobacter oxydans (strain 621H)
GN=dnaJ PE=3 SV=1
Length = 380
Score = 29.6 bits (65), Expect = 6.4, Method: Composition-based stats.
Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 17/96 (17%)
Query: 17 HNVILGNTAVLRCQIPSYMSEYII-------VTSWIQDDVNIYLNTDTG------GK-YV 62
H++ + A + C++P M++ + V + V I T TG GK +
Sbjct: 259 HDIFQRDGANIYCRVPLRMTQAALGTEVEVPVVDGGRSKVRIPAGTQTGETFRLRGKGFS 318
Query: 63 VLSS---GDLYVQIRLSITGNLSVKKMKVEEEEEKK 95
VL S GD+Y+Q+ + +L+ ++ ++ EE EK+
Sbjct: 319 VLRSSARGDMYIQVSVETPSHLTKRQRELLEEFEKE 354
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.133 0.368
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,019,570
Number of Sequences: 539616
Number of extensions: 1428187
Number of successful extensions: 3060
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 3051
Number of HSP's gapped (non-prelim): 15
length of query: 98
length of database: 191,569,459
effective HSP length: 67
effective length of query: 31
effective length of database: 155,415,187
effective search space: 4817870797
effective search space used: 4817870797
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)