Query psy5692
Match_columns 98
No_of_seqs 98 out of 107
Neff 4.0
Searched_HMMs 46136
Date Sat Aug 17 00:12:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5692.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5692hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd05845 Ig2_L1-CAM_like Second 98.4 5E-07 1.1E-11 61.5 5.6 58 18-80 14-71 (95)
2 cd05852 Ig5_Contactin-1 Fifth 98.3 7.6E-07 1.6E-11 56.3 4.4 58 22-88 1-58 (73)
3 cd05727 Ig2_Contactin-2-like S 98.2 3.6E-06 7.9E-11 57.4 5.3 66 18-88 14-79 (96)
4 cd05873 Ig_Sema4D_like Immunog 98.0 1E-05 2.2E-10 53.9 4.4 64 18-91 7-70 (87)
5 cd05724 Ig2_Robo Second immuno 97.9 4.6E-05 1E-09 47.3 5.6 64 18-88 7-70 (86)
6 cd05745 Ig3_Peroxidasin Third 97.8 3.6E-05 7.8E-10 47.6 4.5 59 21-88 1-59 (74)
7 cd04969 Ig5_Contactin_like Fif 97.7 5.6E-05 1.2E-09 46.5 4.3 58 22-88 1-58 (73)
8 cd05872 Ig_Sema4B_like Immunog 97.7 6E-05 1.3E-09 50.2 3.8 61 18-89 7-67 (85)
9 cd05726 Ig4_Robo Fhird immunog 97.6 0.00019 4.2E-09 45.9 5.7 62 22-88 1-66 (90)
10 cd05882 Ig1_Necl-1 First (N-te 97.5 0.0001 2.2E-09 49.1 3.6 60 18-80 8-75 (95)
11 cd05722 Ig1_Neogenin First imm 97.5 0.00057 1.2E-08 44.0 6.8 70 14-89 7-79 (95)
12 cd04979 Ig_Semaphorin_C Immuno 97.5 0.00017 3.7E-09 45.9 4.1 66 18-90 7-72 (89)
13 cd05774 Ig_CEACAM_D1 First imm 97.5 0.00035 7.5E-09 47.8 5.8 59 18-80 9-83 (105)
14 cd05853 Ig6_Contactin-4 Sixth 97.5 0.00022 4.7E-09 47.2 4.4 55 23-79 1-59 (85)
15 cd07701 Ig1_Necl-3 First (N-te 97.3 0.00061 1.3E-08 44.9 4.9 67 18-89 8-82 (95)
16 cd05866 Ig1_NCAM-2 First immun 97.3 0.00057 1.2E-08 45.3 4.8 67 12-89 6-76 (92)
17 cd05741 Ig_CEACAM_D1_like Firs 97.3 0.00083 1.8E-08 42.2 5.1 55 22-79 1-69 (92)
18 cd05870 Ig5_NCAM-2 Fifth immun 97.2 0.0015 3.3E-08 42.4 6.3 76 8-89 3-84 (98)
19 cd05758 Ig5_KIRREL3-like Fifth 97.2 0.0005 1.1E-08 44.7 3.9 66 18-88 12-84 (98)
20 cd05747 Ig5_Titin_like M5, fif 97.2 0.00065 1.4E-08 43.6 4.3 62 18-88 14-78 (92)
21 cd05746 Ig4_Peroxidasin Fourth 97.2 0.00046 9.9E-09 42.2 3.2 55 25-88 1-55 (69)
22 cd05738 Ig2_RPTP_IIa_LAR_like 97.2 0.00042 9.1E-09 43.0 2.9 57 25-88 1-57 (74)
23 smart00409 IG Immunoglobulin. 97.1 0.0013 2.9E-08 38.1 4.7 63 18-89 5-71 (86)
24 smart00410 IG_like Immunoglobu 97.1 0.0013 2.9E-08 38.1 4.7 63 18-89 5-71 (86)
25 cd04968 Ig3_Contactin_like Thi 97.1 0.00076 1.6E-08 42.7 3.4 54 18-79 12-65 (88)
26 cd05723 Ig4_Neogenin Fourth im 97.0 0.0009 1.9E-08 41.2 3.6 56 24-88 1-56 (71)
27 cd05764 Ig_2 Subgroup of the i 97.0 0.0025 5.5E-08 38.8 5.5 58 22-88 1-59 (74)
28 cd05732 Ig5_NCAM-1_like Fifth 97.0 0.0011 2.5E-08 42.0 4.1 70 13-88 8-81 (96)
29 cd05857 Ig2_FGFR Second immuno 97.0 0.0021 4.6E-08 39.9 5.0 66 18-89 5-71 (85)
30 KOG4221|consensus 97.0 0.00078 1.7E-08 63.2 4.0 65 8-80 142-206 (1381)
31 cd05728 Ig4_Contactin-2-like F 97.0 0.0012 2.6E-08 42.0 3.8 64 14-88 7-70 (85)
32 cd05867 Ig4_L1-CAM_like Fourth 96.9 0.0013 2.9E-08 40.7 3.8 61 22-89 1-61 (76)
33 cd05756 Ig1_IL1R_like First im 96.9 0.0018 4E-08 42.7 4.6 66 18-88 10-79 (94)
34 cd05871 Ig_Semaphorin_classIII 96.9 0.0018 4E-08 42.5 4.3 66 18-90 7-74 (91)
35 cd07693 Ig1_Robo First immunog 96.9 0.01 2.2E-07 36.9 7.5 69 18-89 12-84 (100)
36 cd04973 Ig1_FGFR First immunog 96.9 0.0011 2.4E-08 41.7 3.0 59 18-87 5-63 (79)
37 cd04970 Ig6_Contactin_like Six 96.9 0.0017 3.7E-08 40.9 3.9 54 24-79 2-59 (85)
38 cd05894 Ig_C5_MyBP-C C5 immuno 96.8 0.0025 5.4E-08 41.1 4.4 63 18-88 6-71 (86)
39 PF07679 I-set: Immunoglobulin 96.8 0.0016 3.4E-08 40.4 3.3 64 18-90 11-77 (90)
40 cd05725 Ig3_Robo Third immunog 96.8 0.0017 3.6E-08 39.4 3.4 54 25-88 1-54 (69)
41 cd05851 Ig3_Contactin-1 Third 96.8 0.0027 5.9E-08 40.9 4.5 68 10-88 5-72 (88)
42 smart00408 IGc2 Immunoglobulin 96.7 0.007 1.5E-07 33.5 5.1 58 21-88 1-58 (63)
43 cd04977 Ig1_NCAM-1_like First 96.7 0.0048 1E-07 40.0 4.9 62 18-89 11-77 (92)
44 cd05881 Ig1_Necl-2 First (N-te 96.6 0.0046 1E-07 41.8 4.9 59 18-79 8-74 (95)
45 cd05765 Ig_3 Subgroup of the i 96.6 0.0076 1.7E-07 36.8 5.4 62 22-88 1-66 (81)
46 cd05737 Ig_Myomesin_like_C C-t 96.6 0.0031 6.6E-08 40.5 3.8 62 18-88 12-77 (92)
47 cd05734 Ig7_DSCAM Seventh immu 96.6 0.0028 6E-08 39.4 3.4 60 25-89 1-64 (79)
48 cd05775 Ig_SLAM-CD84_like_N N- 96.6 0.0062 1.3E-07 40.0 5.1 58 20-79 2-73 (97)
49 cd05730 Ig3_NCAM-1_like Third 96.6 0.005 1.1E-07 39.3 4.4 62 18-87 14-76 (95)
50 cd05717 Ig1_Necl-1-3_like Firs 96.5 0.0065 1.4E-07 39.0 4.9 68 18-90 8-83 (95)
51 cd05740 Ig_CEACAM_D4 Fourth im 96.5 0.0039 8.5E-08 40.7 3.7 60 18-88 14-74 (91)
52 cd05898 Ig5_KIRREL3 Fifth immu 96.5 0.0052 1.1E-07 41.7 4.4 57 18-78 12-75 (98)
53 cd04978 Ig4_L1-NrCAM_like Four 96.5 0.0064 1.4E-07 36.8 4.2 61 22-89 1-61 (76)
54 cd05757 Ig2_IL1R_like Second i 96.4 0.0044 9.5E-08 41.0 3.6 57 18-79 6-64 (92)
55 cd05763 Ig_1 Subgroup of the i 96.4 0.0088 1.9E-07 36.7 4.5 58 25-88 1-59 (75)
56 cd05743 Ig_Perlecan_D2_like Im 96.4 0.004 8.6E-08 38.8 2.9 58 22-88 1-61 (78)
57 cd05762 Ig8_MLCK Eighth immuno 96.3 0.007 1.5E-07 39.9 4.1 55 18-79 11-68 (98)
58 cd05850 Ig1_Contactin-2 First 96.3 0.01 2.2E-07 38.6 4.6 72 6-88 6-78 (94)
59 cd05849 Ig1_Contactin-1 First 96.2 0.012 2.5E-07 38.6 4.8 59 21-88 18-77 (93)
60 PF00047 ig: Immunoglobulin do 96.2 0.0031 6.7E-08 37.1 1.8 52 22-79 1-57 (64)
61 cd05713 Ig_MOG_like Immunoglob 96.2 0.014 3E-07 37.6 5.0 66 22-89 1-85 (100)
62 cd05736 Ig2_Follistatin_like S 96.2 0.008 1.7E-07 36.8 3.6 58 25-89 1-59 (76)
63 cd05848 Ig1_Contactin-5 First 96.1 0.013 2.9E-07 38.1 4.5 61 21-89 18-79 (94)
64 cd05735 Ig8_DSCAM Eight immuno 96.1 0.011 2.3E-07 38.1 3.9 52 22-79 1-59 (88)
65 cd05892 Ig_Myotilin_C C-termin 96.0 0.0073 1.6E-07 38.4 3.0 49 25-79 1-53 (75)
66 cd04967 Ig1_Contactin First Ig 96.0 0.0099 2.1E-07 37.9 3.6 61 20-88 17-78 (91)
67 cd05718 Ig1_PVR_like First imm 95.9 0.023 5E-07 36.0 5.0 63 24-88 2-81 (98)
68 cd05744 Ig_Myotilin_C_like Imm 95.9 0.011 2.4E-07 36.9 3.3 49 25-79 1-53 (75)
69 cd04972 Ig_TrkABC_d4 Fourth do 95.9 0.019 4.1E-07 36.5 4.4 66 18-89 11-76 (90)
70 cd05869 Ig5_NCAM-1 Fifth immun 95.9 0.021 4.6E-07 36.9 4.7 59 18-79 12-75 (97)
71 cd05854 Ig6_Contactin-2 Sixth 95.8 0.018 3.9E-07 36.9 4.1 60 24-87 2-65 (85)
72 cd05891 Ig_M-protein_C C-termi 95.7 0.017 3.6E-07 37.4 3.7 62 18-88 12-77 (92)
73 cd05877 Ig_LP_like Immunoglobu 95.6 0.023 4.9E-07 37.0 4.1 67 21-89 1-88 (106)
74 KOG3513|consensus 95.6 0.019 4.2E-07 53.3 4.9 56 18-80 437-492 (1051)
75 cd05893 Ig_Palladin_C C-termin 95.5 0.014 3E-07 36.9 2.7 48 26-79 2-53 (75)
76 cd05760 Ig2_PTK7 Second immuno 95.4 0.025 5.3E-07 35.3 3.7 49 25-79 1-50 (77)
77 cd05856 Ig2_FGFRL1-like Second 95.4 0.016 3.4E-07 35.1 2.6 60 21-88 8-67 (82)
78 cd00099 IgV Immunoglobulin var 95.4 0.034 7.4E-07 35.4 4.2 67 19-89 3-87 (105)
79 cd05865 Ig1_NCAM-1 First immun 95.3 0.039 8.5E-07 36.5 4.4 65 18-89 11-80 (96)
80 cd05895 Ig_Pro_neuregulin-1 Im 95.2 0.03 6.4E-07 34.4 3.5 60 25-88 1-63 (76)
81 PF07686 V-set: Immunoglobulin 95.1 0.015 3.3E-07 36.5 1.8 67 18-88 12-98 (114)
82 PF13895 Ig_2: Immunoglobulin 94.9 0.065 1.4E-06 31.7 4.2 37 13-53 6-42 (80)
83 cd05729 Ig2_FGFR_like Second i 94.9 0.071 1.5E-06 32.2 4.5 66 18-89 5-71 (85)
84 cd05879 Ig_P0 Immunoglobulin ( 94.7 0.11 2.3E-06 36.0 5.5 70 17-88 8-99 (116)
85 cd04974 Ig3_FGFR Third immunog 94.5 0.099 2.1E-06 33.5 4.6 53 22-79 1-67 (90)
86 cd04975 Ig4_SCFR_like Fourth i 94.4 0.053 1.1E-06 36.4 3.3 56 18-79 14-77 (101)
87 cd05846 Ig1_MRC-OX-2_like Firs 94.2 0.19 4.2E-06 32.5 5.7 56 22-79 1-73 (97)
88 cd05715 Ig_P0-like Immunoglobu 94.2 0.17 3.7E-06 33.8 5.5 71 18-90 9-101 (116)
89 PHA02785 IL-beta-binding prote 94.2 0.069 1.5E-06 42.3 4.0 67 20-88 233-311 (326)
90 cd05878 Ig_Aggrecan_like Immun 94.1 0.15 3.4E-06 34.3 5.1 59 21-79 1-84 (110)
91 cd05876 Ig3_L1-CAM Third immun 93.9 0.068 1.5E-06 32.7 2.8 54 26-88 2-55 (71)
92 cd04983 IgV_TCR_alpha_like Imm 93.8 0.18 3.9E-06 32.5 4.9 67 18-89 9-90 (109)
93 cd05716 Ig_pIgR Immunoglobulin 93.8 0.13 2.7E-06 33.0 4.1 67 19-89 4-84 (98)
94 cd05752 Ig1_FcgammaR_like Frst 93.8 0.25 5.3E-06 31.5 5.4 56 18-89 11-66 (78)
95 PHA02826 IL-1 receptor-like pr 93.7 0.11 2.3E-06 39.8 4.2 57 19-79 141-200 (227)
96 cd05858 Ig3_FGFR-2 Third immun 93.6 0.11 2.4E-06 33.0 3.5 53 22-79 1-67 (90)
97 smart00406 IGv Immunoglobulin 93.5 0.14 2.9E-06 30.6 3.6 55 24-79 1-74 (81)
98 cd07702 Ig2_VEGFR-1 Second imm 93.4 0.084 1.8E-06 33.7 2.7 47 26-79 2-48 (72)
99 cd07690 Ig1_CD4 First immunogl 93.2 0.16 3.4E-06 34.0 3.8 67 19-90 4-86 (94)
100 KOG4222|consensus 93.1 0.13 2.8E-06 48.7 4.3 73 3-80 128-200 (1281)
101 cd05868 Ig4_NrCAM Fourth immun 93.1 0.17 3.6E-06 31.5 3.6 60 22-88 1-60 (76)
102 cd04984 IgV_L_lambda Immunoglo 92.9 0.34 7.3E-06 31.1 5.1 61 18-79 2-75 (98)
103 cd04980 IgV_L_kappa Immunoglob 92.9 0.45 9.7E-06 31.0 5.6 59 19-79 12-83 (106)
104 cd05880 Ig_EVA1 Immunoglobulin 92.8 0.26 5.6E-06 33.3 4.5 69 18-89 9-99 (115)
105 cd05773 Ig8_hNephrin_like Eigh 92.7 0.32 6.8E-06 32.5 4.8 61 21-89 22-90 (109)
106 cd05714 Ig_CSPGs_LP Immunoglob 92.2 0.23 5E-06 32.3 3.5 66 21-88 1-87 (106)
107 cd05739 Ig3_RPTP_IIa_LAR_like 92.1 0.3 6.5E-06 30.1 3.9 46 22-75 1-46 (69)
108 cd05711 Ig_FcalphaRI Immunoglo 92.0 0.31 6.8E-06 31.8 4.0 52 18-77 11-65 (94)
109 cd05712 Ig_Siglec_N Immunoglob 91.9 0.36 7.9E-06 32.5 4.4 69 18-88 10-99 (119)
110 cd05753 Ig2_FcgammaR_like Seco 91.7 0.4 8.6E-06 30.6 4.2 51 18-79 10-60 (83)
111 cd05733 Ig6_L1-CAM_like Sixth 91.5 0.84 1.8E-05 28.3 5.5 59 25-88 1-62 (77)
112 cd05888 Ig1_Nectin-4_like Frst 91.2 0.75 1.6E-05 30.2 5.2 56 24-79 2-76 (100)
113 cd05899 IgV_TCR_beta Immunoglo 91.1 0.42 9E-06 31.3 3.9 64 18-87 9-90 (110)
114 cd04976 Ig2_VEGFR Second immun 91.1 0.23 4.9E-06 30.6 2.5 53 26-88 2-54 (71)
115 cd07696 IgC_CH3 CH3 domain (th 91.1 0.9 1.9E-05 30.3 5.6 43 20-63 12-61 (96)
116 cd05754 Ig3_Perlecan_like Thir 91.0 0.23 4.9E-06 31.0 2.5 53 18-79 12-64 (85)
117 cd05766 IgC_MHC_II_beta Class 90.9 0.76 1.7E-05 30.3 5.1 43 20-63 12-61 (94)
118 cd05731 Ig3_L1-CAM_like Third 90.6 0.27 5.9E-06 29.1 2.5 53 25-87 1-54 (71)
119 cd05859 Ig4_PDGFR-alpha Fourth 90.2 0.45 9.7E-06 31.7 3.5 55 18-79 14-77 (101)
120 PHA02785 IL-beta-binding prote 90.2 0.52 1.1E-05 37.3 4.4 56 18-79 132-189 (326)
121 KOG4221|consensus 90.2 0.28 6E-06 46.8 3.2 69 9-81 42-110 (1381)
122 cd05751 Ig1_LILRB1_like First 90.0 0.23 5E-06 32.0 1.9 33 13-49 7-39 (91)
123 cd05875 Ig6_hNeurofascin_like 89.9 1.5 3.2E-05 27.5 5.5 60 25-89 1-63 (77)
124 cd05750 Ig_Pro_neuregulin Immu 89.5 0.8 1.7E-05 27.3 3.9 59 26-89 2-63 (75)
125 cd05770 IgC_beta2m Class I maj 89.3 1.6 3.4E-05 29.2 5.6 58 19-77 12-82 (93)
126 cd07697 IgC_TCR_gamma T cell r 89.3 0.43 9.4E-06 32.2 2.9 30 21-51 15-44 (96)
127 cd04982 IgV_TCR_gamma Immunogl 89.1 1.5 3.2E-05 28.8 5.4 60 19-79 10-89 (116)
128 PHA02826 IL-1 receptor-like pr 88.9 0.76 1.6E-05 35.1 4.3 59 18-79 33-110 (227)
129 cd05900 Ig_Aggrecan Immunoglob 88.4 1.3 2.8E-05 30.5 4.8 67 21-89 1-94 (112)
130 cd05748 Ig_Titin_like Immunogl 88.1 0.99 2.1E-05 27.2 3.7 56 25-89 2-60 (74)
131 KOG3513|consensus 87.7 0.93 2E-05 42.5 4.8 59 19-80 148-206 (1051)
132 cd05889 Ig1_DNAM-1_like First 86.2 2.9 6.2E-05 28.1 5.4 54 24-79 2-72 (96)
133 cd05759 Ig2_KIRREL3-like Secon 85.9 4 8.7E-05 25.1 5.7 61 25-90 2-67 (82)
134 cd05874 Ig6_NrCAM Sixth immuno 85.6 4.6 0.0001 25.1 5.9 59 26-89 2-63 (77)
135 cd07706 IgV_TCR_delta Immunogl 85.3 2.1 4.4E-05 28.3 4.3 58 19-78 11-83 (116)
136 cd00098 IgC Immunoglobulin Con 85.0 3.1 6.8E-05 25.8 4.9 30 21-51 12-41 (95)
137 cd05742 Ig1_VEGFR_like First i 83.9 1 2.2E-05 28.0 2.2 64 22-88 1-68 (84)
138 cd05768 IgC_CH4 CH4 domain (fo 83.8 3.2 6.9E-05 27.8 4.8 31 20-51 14-44 (102)
139 cd05887 Ig1_Nectin-3_like Firs 83.3 3.8 8.2E-05 27.6 5.0 54 24-79 2-72 (96)
140 cd07700 IgV_CD8_beta Immunoglo 83.3 2.4 5.2E-05 27.8 4.0 59 19-79 3-84 (107)
141 cd04986 IgC_CH2 CH2 domain (se 82.4 2.3 4.9E-05 29.1 3.7 44 20-64 17-65 (99)
142 cd05772 IgC_SIRP Signal-regula 82.3 5.6 0.00012 27.2 5.6 33 18-51 17-49 (111)
143 cd07699 IgC_L Immunoglobulin C 81.5 3.6 7.9E-05 27.2 4.4 30 21-51 16-45 (100)
144 cd05761 Ig2_Necl-1-4_like Seco 81.1 8.7 0.00019 24.1 5.9 61 25-91 2-67 (82)
145 cd05720 Ig_CD8_alpha Immunoglo 81.1 4.7 0.0001 26.5 4.8 58 19-79 3-81 (104)
146 cd07705 Ig2_Necl-1 Second immu 80.3 10 0.00022 24.2 6.0 25 25-51 2-26 (83)
147 cd05767 IgC_MHC_II_alpha Class 80.2 5 0.00011 26.7 4.7 42 21-63 14-62 (94)
148 cd04981 IgV_H Immunoglobulin ( 78.9 4.9 0.00011 27.1 4.4 60 19-79 9-88 (117)
149 cd04985 IgC_CH1 CH1 domain (fi 78.5 5 0.00011 26.6 4.3 29 21-50 15-43 (95)
150 cd04971 Ig_TrKABC_d5 Fifth dom 77.1 2.4 5.2E-05 27.0 2.3 39 41-79 14-58 (81)
151 cd05847 IgC_CH2_IgE CH2 domain 77.1 6.7 0.00015 25.9 4.6 30 21-51 13-42 (94)
152 cd05896 Ig1_IL1RAPL-1_like Fir 77.1 8.6 0.00019 26.8 5.3 61 18-78 11-81 (104)
153 cd05902 Ig_Neurocan Immunoglob 76.7 5.5 0.00012 27.3 4.2 32 56-89 55-92 (110)
154 cd05884 Ig2_Necl-3 Second immu 76.2 17 0.00037 23.3 6.2 25 25-51 2-26 (83)
155 cd05897 Ig2_IL1R2_like Second 74.9 3.8 8.3E-05 27.5 3.0 59 18-79 6-67 (95)
156 PF07654 C1-set: Immunoglobuli 73.8 7.3 0.00016 24.3 3.9 44 21-65 7-57 (83)
157 cd07698 IgC_MHC_I_alpha3 Class 73.7 20 0.00043 23.0 6.0 27 22-49 14-40 (93)
158 cd05886 Ig1_Nectin-1_like Firs 72.4 14 0.0003 24.7 5.2 56 24-79 2-75 (99)
159 cd05769 IgC_TCR_beta T cell re 71.2 13 0.00027 25.8 4.9 30 21-51 17-46 (115)
160 PF13927 Ig_3: Immunoglobulin 70.9 4.3 9.4E-05 23.1 2.2 56 25-88 18-73 (75)
161 cd05862 Ig1_VEGFR First immuno 69.3 7.6 0.00016 24.7 3.3 57 22-79 1-62 (86)
162 cd05864 Ig2_VEGFR-2 Second imm 67.0 4.6 0.0001 25.1 1.9 45 26-79 2-46 (70)
163 KOG4222|consensus 66.5 6.1 0.00013 38.0 3.2 67 9-79 318-388 (1281)
164 cd05861 Ig1_PDGFR-alphabeta Fr 66.4 6.9 0.00015 24.7 2.6 59 22-88 1-65 (84)
165 cd05863 Ig2_VEGFR-3 Second imm 66.2 4.6 9.9E-05 25.2 1.7 42 26-79 2-43 (67)
166 cd05749 Ig2_Tyro3_like Second 66.2 31 0.00068 21.9 5.7 49 18-75 9-57 (81)
167 PF01436 NHL: NHL repeat; Int 64.0 8.8 0.00019 20.2 2.4 20 62-85 8-27 (28)
168 cd00096 Ig Immunoglobulin doma 63.4 6.2 0.00013 20.7 1.7 60 25-89 1-63 (74)
169 cd05885 Ig2_Necl-4 Second immu 62.2 27 0.00059 22.8 4.9 59 25-89 2-63 (80)
170 cd05755 Ig2_ICAM-1_like Second 61.9 14 0.00031 25.2 3.7 35 18-53 12-47 (100)
171 cd05901 Ig_Versican Immunoglob 60.8 46 0.00099 23.4 6.2 66 22-89 2-99 (117)
172 cd05771 IgC_Tapasin_R Tapasin- 59.4 48 0.001 22.4 6.0 27 21-48 52-78 (139)
173 PHA03376 BARF1; Provisional 58.6 51 0.0011 26.2 6.7 61 19-79 23-99 (221)
174 cd05855 Ig_TrkB_d5 Fifth domai 56.7 9 0.00019 24.7 1.9 43 41-89 14-64 (79)
175 cd07689 Ig2_VCAM-1 Second immu 56.1 29 0.00063 24.1 4.4 33 17-50 10-43 (99)
176 PF11025 GP40: Glycoprotein GP 49.5 32 0.00069 26.1 4.0 51 23-91 21-71 (165)
177 PF05694 SBP56: 56kDa selenium 49.3 23 0.0005 30.8 3.7 39 57-96 85-126 (461)
178 PHA02987 Ig domain OX-2-like p 49.0 40 0.00088 26.1 4.6 59 18-79 26-97 (189)
179 cd07692 Ig_CD3_epsilon Immunog 46.3 47 0.001 21.5 4.0 26 18-49 3-28 (65)
180 PF11101 DUF2884: Protein of u 45.0 25 0.00055 27.0 3.0 16 58-73 22-38 (229)
181 PF07354 Sp38: Zona-pellucida- 44.5 22 0.00047 29.0 2.7 35 42-79 15-49 (271)
182 PHA03052 Hypothetical protein; 41.1 55 0.0012 21.7 3.7 45 19-63 9-54 (69)
183 PF02107 FlgH: Flagellar L-rin 40.5 37 0.0008 25.2 3.2 27 62-88 102-128 (179)
184 cd08909 START_STARD13-like C-t 40.3 68 0.0015 24.6 4.7 26 22-47 93-122 (205)
185 PF06092 DUF943: Enterobacteri 39.6 56 0.0012 24.5 4.0 33 36-70 120-152 (157)
186 PF10411 DsbC_N: Disulfide bon 37.0 66 0.0014 19.5 3.4 32 33-70 20-51 (57)
187 PF11996 DUF3491: Protein of u 36.8 46 0.00099 31.4 3.8 52 23-74 724-783 (936)
188 PRK10626 hypothetical protein; 36.4 33 0.0007 27.4 2.5 25 58-83 45-69 (239)
189 PF06188 HrpE: HrpE/YscL/FliH 36.0 19 0.00041 27.0 1.1 46 22-71 130-181 (191)
190 PF13750 Big_3_3: Bacterial Ig 33.8 1.8E+02 0.004 21.0 6.1 23 66-88 121-145 (158)
191 PRK12407 flgH flagellar basal 31.0 66 0.0014 25.1 3.4 25 62-86 142-166 (221)
192 PRK12696 flgH flagellar basal 30.0 70 0.0015 25.2 3.4 26 62-87 158-183 (236)
193 cd05721 IgV_CTLA-4 Immunoglobu 29.7 57 0.0012 23.2 2.6 29 18-48 9-39 (115)
194 PRK12700 flgH flagellar basal 29.6 72 0.0016 25.0 3.4 25 62-86 152-176 (230)
195 PF09466 Yqai: Hypothetical pr 28.9 40 0.00086 22.5 1.6 21 49-73 32-52 (71)
196 cd08907 START_STARD8-like C-te 28.8 1.5E+02 0.0032 23.1 5.0 21 27-47 102-122 (205)
197 PRK00249 flgH flagellar basal 28.7 76 0.0017 24.6 3.4 25 62-86 144-168 (222)
198 PRK12701 flgH flagellar basal 28.2 78 0.0017 24.8 3.4 25 61-85 150-174 (230)
199 PRK12697 flgH flagellar basal 27.5 83 0.0018 24.7 3.4 25 62-86 148-172 (226)
200 PF05738 Cna_B: Cna protein B- 26.7 74 0.0016 18.9 2.4 23 57-79 25-49 (70)
201 PRK12788 flgH flagellar basal 26.2 89 0.0019 24.7 3.4 25 62-86 156-180 (234)
202 PF06328 Lep_receptor_Ig: Ig-l 26.1 1.6E+02 0.0035 19.5 4.2 55 13-72 9-65 (89)
203 KOG0094|consensus 25.3 18 0.00039 28.7 -0.6 13 25-37 82-94 (221)
204 PRK12698 flgH flagellar basal 25.2 97 0.0021 24.1 3.4 25 62-86 145-169 (224)
205 PF05132 RNA_pol_Rpc4: RNA pol 25.1 1E+02 0.0022 21.5 3.2 34 32-66 97-130 (131)
206 PRK14051 negative regulator Gr 23.9 1.2E+02 0.0026 22.1 3.4 41 7-48 69-109 (123)
207 PRK12699 flgH flagellar basal 23.7 1E+02 0.0023 24.5 3.4 24 61-84 168-191 (246)
208 cd07694 Ig2_CD4 Second immunog 23.2 69 0.0015 21.9 2.0 31 17-48 9-39 (88)
209 smart00407 IGc1 Immunoglobulin 22.8 1.9E+02 0.0041 17.5 5.1 26 24-50 1-26 (75)
210 PF07250 Glyoxal_oxid_N: Glyox 21.4 69 0.0015 25.2 1.9 19 49-73 169-187 (243)
211 PF13793 Pribosyltran_N: N-ter 20.7 1E+02 0.0022 21.3 2.5 23 60-82 28-50 (116)
212 PF13620 CarboxypepD_reg: Carb 20.2 95 0.002 18.7 2.0 19 54-72 33-53 (82)
No 1
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=98.44 E-value=5e-07 Score=61.51 Aligned_cols=58 Identities=19% Similarity=0.320 Sum_probs=46.2
Q ss_pred ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecCC
Q psy5692 18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITGN 80 (98)
Q Consensus 18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~n 80 (98)
.|..|.+++|.|..|..--+ -..+|+.++..+.. .++|+.+.++|.|||++|+..|..
T Consensus 14 ~V~eG~~~~L~C~pP~g~P~--P~i~W~~~~~~~i~---~~~Ri~~~~~GnL~fs~v~~~D~g 71 (95)
T cd05845 14 EVEEGDSVVLPCNPPKSAVP--LRIYWMNSDLLHIT---QDERVSMGQNGNLYFANVEEQDSH 71 (95)
T ss_pred EEecCCCEEEEecCCCCCCC--CEEEEECCCCcccc---ccccEEECCCceEEEEEEehhhCC
Confidence 56789999999997655444 34689987744333 479999999999999999999985
No 2
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=98.35 E-value=7.6e-07 Score=56.31 Aligned_cols=58 Identities=10% Similarity=0.158 Sum_probs=44.9
Q ss_pred cCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecCCcceeeeee
Q psy5692 22 GNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITGNLSVKKMKV 88 (98)
Q Consensus 22 GNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~n~~~~~~~~ 88 (98)
|.+|+|.|.+..+-. ...+|.+++..+.+ ++||.++++|.|.|++++.+|.- .-.|..
T Consensus 1 G~~~~l~C~~~g~P~---p~v~W~k~~~~l~~----~~r~~~~~~g~L~I~~v~~~D~G--~Y~C~A 58 (73)
T cd05852 1 GGRVIIECKPKAAPK---PKFSWSKGTELLVN----NSRISIWDDGSLEILNITKLDEG--SYTCFA 58 (73)
T ss_pred CCeEEEEEecceeCC---CEEEEEeCCEeccc----CCCEEEcCCCEEEECcCChhHCE--EEEEEE
Confidence 789999999875543 25689999865544 57999999999999999987763 355544
No 3
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=98.19 E-value=3.6e-06 Score=57.40 Aligned_cols=66 Identities=20% Similarity=0.390 Sum_probs=47.4
Q ss_pred ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecCCcceeeeee
Q psy5692 18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITGNLSVKKMKV 88 (98)
Q Consensus 18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~n~~~~~~~~ 88 (98)
.|..|..|+|.|..|...-. ...+|..++..+... +...+++..++|.|||.+|+.+|.. .-.|-.
T Consensus 14 ~v~eG~~~~L~C~pP~g~P~--p~~~W~k~~~~~~~~-~d~r~~~~~~~G~L~fs~v~~~D~g--~Y~C~A 79 (96)
T cd05727 14 KVKEGWGVVLFCDPPPHYPD--LSYRWLLNEFPNFIP-EDGRRFVSQTNGNLYIAKVEASDRG--NYSCFV 79 (96)
T ss_pred eeeeCCcEEEeeCCCCCCCC--CEEEEEECCcccccc-cCCCeEEeCCCCcEEEeecCHhhCc--eeEEEE
Confidence 57889999999998877665 567999998433221 1234555557999999999999873 344543
No 4
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=98.01 E-value=1e-05 Score=53.94 Aligned_cols=64 Identities=20% Similarity=0.252 Sum_probs=47.2
Q ss_pred ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecCCcceeeeeehHH
Q psy5692 18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITGNLSVKKMKVEEE 91 (98)
Q Consensus 18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~n~~~~~~~~~~~ 91 (98)
.|..|++|.|.|..++. ..-.+|.+++..|.++ .+||.+ ..|.|.|+|++..|. -+-.|-.+|.
T Consensus 7 ~v~~G~~v~L~C~~~~~----~~~i~W~~ng~~i~~~---~~r~~~-~~~~L~I~nv~~~Ds--G~Y~C~a~e~ 70 (87)
T cd05873 7 TFKLGNNAELKCSPKSN----LARVVWKFDGKVLTPE---SAKYLL-YRDGLLIFNASEADA--GRYQCLSVEK 70 (87)
T ss_pred EEECCCCEEEEEECCCC----CCeEEEEECCEECCCC---CceEEE-ECCcEEEeCCCHHHC--EEEEEEEEec
Confidence 67899999999996542 2457899999877552 368865 568899999988875 4455555443
No 5
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=97.88 E-value=4.6e-05 Score=47.33 Aligned_cols=64 Identities=22% Similarity=0.333 Sum_probs=46.0
Q ss_pred ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecCCcceeeeee
Q psy5692 18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITGNLSVKKMKV 88 (98)
Q Consensus 18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~n~~~~~~~~ 88 (98)
.+..|.+|.|.|.++..-. .-...|.+++..+.+ .++++.+.++|.|.|++++.+|. ..-.|..
T Consensus 7 ~~~~G~~v~l~C~~~~g~p--~p~i~W~k~g~~~~~---~~~~~~~~~~~~L~I~~~~~~D~--G~Y~C~a 70 (86)
T cd05724 7 QVAVGEMAVLECSPPRGHP--EPTVSWRKDGQPLNL---DNERVRIVDDGNLLIAEARKSDE--GTYKCVA 70 (86)
T ss_pred EEeCCCCEEEEEECCCCCC--CCEEEEEECCEECCC---CCCCEEEccCCEEEEeECCcccC--EEEEEEE
Confidence 5678999999998742211 124569999876654 35788888999999999998774 3445544
No 6
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=97.83 E-value=3.6e-05 Score=47.64 Aligned_cols=59 Identities=20% Similarity=0.320 Sum_probs=43.9
Q ss_pred ecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecCCcceeeeee
Q psy5692 21 LGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITGNLSVKKMKV 88 (98)
Q Consensus 21 rGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~n~~~~~~~~ 88 (98)
.|.++.|.|.+...-.- ..+|.+++..+.+ +.++.+.++|.|.|.+++.+|.- .-.|..
T Consensus 1 eG~~v~l~C~~~g~P~p---~i~W~k~g~~~~~----~~~~~~~~~~~L~I~~v~~~D~G--~Y~C~A 59 (74)
T cd05745 1 EGQTVDFLCEAQGYPQP---VIAWTKGGSQLSV----DRRHLVLSSGTLRISRVALHDQG--QYECQA 59 (74)
T ss_pred CCCeEEEEeECCEecCC---EEEEEECCEECCC----CCCeEEccCCeEEEeeCCHHhCE--EEEEEE
Confidence 38999999998543332 5789999876533 56888999999999999987743 344543
No 7
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=97.74 E-value=5.6e-05 Score=46.52 Aligned_cols=58 Identities=10% Similarity=0.138 Sum_probs=43.5
Q ss_pred cCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecCCcceeeeee
Q psy5692 22 GNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITGNLSVKKMKV 88 (98)
Q Consensus 22 GNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~n~~~~~~~~ 88 (98)
|.++.|.|.+-..- ....+|.+++..+.+ ++++.++++|.|.|+++..+|.- .-+|..
T Consensus 1 G~~v~L~C~~~g~P---~p~v~W~k~~~~~~~----~~~~~~~~~~~L~i~~v~~~D~G--~Y~C~a 58 (73)
T cd04969 1 GGDVIIECKPKAAP---KPTISWSKGTELLTN----SSRICIWPDGSLEILNVTKSDEG--KYTCFA 58 (73)
T ss_pred CCeEEEEEeeeEcC---CCEEEEEECCEEccc----CCCEEECCCCeEEEccCChhHCE--EEEEEE
Confidence 78999999863221 235789999977755 67999999999999999887754 345544
No 8
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=97.66 E-value=6e-05 Score=50.24 Aligned_cols=61 Identities=21% Similarity=0.322 Sum_probs=46.8
Q ss_pred ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecCCcceeeeeeh
Q psy5692 18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITGNLSVKKMKVE 89 (98)
Q Consensus 18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~n~~~~~~~~~ 89 (98)
-|+.|++++|.|...| ..+...|.++...|-+ ++|+.+.++| |+|+.++..|.- .--|.-+
T Consensus 7 tv~~g~~v~L~C~~~s----~~A~v~W~~ng~~l~~----~~r~~~~~~G-LlI~~~~~~dsG--~Y~C~s~ 67 (85)
T cd05872 7 TVAPGADVVLPCQLRS----NLASPVWLFNGTPLNA----QFSYRVGTDG-LLILVTSPEHSG--TYRCYSE 67 (85)
T ss_pred EEecCCCEEEECCCCC----CCccEEEEECCcccCC----CcceEEeCCC-CEEEECCHhhCE--EEEEEEe
Confidence 6789999999999664 3558899999977644 6899999998 669999877654 3344433
No 9
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=97.63 E-value=0.00019 Score=45.87 Aligned_cols=62 Identities=15% Similarity=0.299 Sum_probs=43.8
Q ss_pred cCeEEEEccCCCCccceeEEeEEccCC-ee-eecC--cCCCceEEEccCccEEEEeEeeecCCcceeeeee
Q psy5692 22 GNTAVLRCQIPSYMSEYIIVTSWIQDD-VN-IYLN--TDTGGKYVVLSSGDLYVQIRLSITGNLSVKKMKV 88 (98)
Q Consensus 22 GNtAVLkC~IPs~V~d~V~V~SW~~Dd-~~-I~p~--~~~dgKY~vlpsGeL~Ir~v~~~~~n~~~~~~~~ 88 (98)
|.++.|.|.+...-.- ...|.+++ .. +++. ....+||.+.++|.|.|.+++.+|. ..-.|..
T Consensus 1 G~~v~L~C~~~g~P~p---~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~~L~I~~v~~~D~--G~Y~C~a 66 (90)
T cd05726 1 GRTVTFQCEATGNPQP---AIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDV--GYYICQT 66 (90)
T ss_pred CCEEEEEEECCccCCC---EEEEEeCCCcceeecccCCCCCCeEEECCCCeEEEeeCChhhC--EEEEEEE
Confidence 7899999998654333 35699987 32 3332 2346899999999999999998775 3455543
No 10
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=97.54 E-value=0.0001 Score=49.12 Aligned_cols=60 Identities=12% Similarity=0.187 Sum_probs=42.1
Q ss_pred ceeecCeEEEEccCCCCccceeEEeEEccCC-eeeecCc---CCCceEEEcc----CccEEEEeEeeecCC
Q psy5692 18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-VNIYLNT---DTGGKYVVLS----SGDLYVQIRLSITGN 80 (98)
Q Consensus 18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-~~I~p~~---~~dgKY~vlp----sGeL~Ir~v~~~~~n 80 (98)
.|..|.+|+|+|.+... ......|..++ ..++-.. -.++||.+.. ++.|.|+||+.+|+=
T Consensus 8 tv~~G~tv~L~C~v~g~---~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G 75 (95)
T cd05882 8 TVAVGGTVTLKCGVKEH---DNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEG 75 (95)
T ss_pred EEecCCcEEEEEEEeCC---CCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCE
Confidence 67899999999997542 23447999988 3333211 1367887652 468999999999863
No 11
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=97.52 E-value=0.00057 Score=43.95 Aligned_cols=70 Identities=16% Similarity=0.196 Sum_probs=48.6
Q ss_pred eeeeceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeec---CCcceeeeeeh
Q psy5692 14 NYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSIT---GNLSVKKMKVE 89 (98)
Q Consensus 14 ~d~~~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~---~n~~~~~~~~~ 89 (98)
.+. .+..|++++|.|.+.+.- .-...|.+|+..|.+. .+.++.++++|.|.|.+++.+. .....-.|...
T Consensus 7 ~~~-~~~~g~~v~l~C~v~g~P---~p~i~W~k~g~~l~~~--~~~~~~~~~~~~l~i~~v~~~~~~~~D~G~Y~C~a~ 79 (95)
T cd05722 7 SDI-VAVRGGPVVLNCSAEGEP---PPKIEWKKDGVLLNLV--SDERRQQLPNGSLLITSVVHSKHNKPDEGFYQCVAQ 79 (95)
T ss_pred CCe-EEcCCCCEEEeeecccCC---CCEEEEEECCeECccc--cCcceEEccCCeEEEeeeeccCCCCCcCEEEEEEEE
Confidence 444 677899999999986553 2345999998766432 3467889999999999986432 33334555543
No 12
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=97.50 E-value=0.00017 Score=45.92 Aligned_cols=66 Identities=17% Similarity=0.278 Sum_probs=46.4
Q ss_pred ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecCCcceeeeeehH
Q psy5692 18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITGNLSVKKMKVEE 90 (98)
Q Consensus 18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~n~~~~~~~~~~ 90 (98)
.+..|.++.|.|.+.+ .. .-..|.+++..+.+.....+++.+.++ .|.|.+++.+|. ..-.|...+
T Consensus 7 ~v~~g~~v~L~C~~~~---p~-~~i~W~k~~~~~~~~~~~~~~~~~~~~-~L~I~~~~~~D~--G~Y~C~a~~ 72 (89)
T cd04979 7 TVVEGNSVFLECSPKS---NL-ASVVWLFQGGPLQRKEEPEERLLVTED-GLLIRSVSPADA--GVYTCQSVE 72 (89)
T ss_pred EEECCCcEEEEEeCCC---CC-ceEEEEECCcccccccCcCceEEEcCC-CEEEccCCHHHC--EEEEEEEec
Confidence 4678999999999764 22 346999999665442223468877765 599999998765 566676643
No 13
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=97.50 E-value=0.00035 Score=47.78 Aligned_cols=59 Identities=20% Similarity=0.434 Sum_probs=45.0
Q ss_pred ceeecCeEEEEcc-CCCCccceeEEeEEccCC-----eee--e-cC-------cCCCceEEEccCccEEEEeEeeecCC
Q psy5692 18 NVILGNTAVLRCQ-IPSYMSEYIIVTSWIQDD-----VNI--Y-LN-------TDTGGKYVVLSSGDLYVQIRLSITGN 80 (98)
Q Consensus 18 ~VirGNtAVLkC~-IPs~V~d~V~V~SW~~Dd-----~~I--~-p~-------~~~dgKY~vlpsGeL~Ir~v~~~~~n 80 (98)
.|+.|..++|.|. .| +-+...+|.+.. ..| | |. ....||+.+.++|.|.|++++.+|.-
T Consensus 9 ~~~~G~~V~L~v~~~p----~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~~v~~~D~G 83 (105)
T cd05774 9 QVAEGENVLLLVHNLP----ENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQNVTQKDTG 83 (105)
T ss_pred cccCCCCEEEEecCCC----CCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEEecCCcccCE
Confidence 7889999999998 35 566677999973 222 2 21 12579999999999999999888764
No 14
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=97.47 E-value=0.00022 Score=47.20 Aligned_cols=55 Identities=24% Similarity=0.330 Sum_probs=39.6
Q ss_pred CeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEE----ccCccEEEEeEeeecC
Q psy5692 23 NTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVV----LSSGDLYVQIRLSITG 79 (98)
Q Consensus 23 NtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~v----lpsGeL~Ir~v~~~~~ 79 (98)
.+|+|.|.++.. -+.-....|.+|+..|.. ...+++|.+ ..+|.|.|+|++..|.
T Consensus 1 ~~~~l~C~v~~d-~~l~~~~~W~~dg~~i~~-~~~~~~~~~~~~~~~~~~L~I~nv~~~ds 59 (85)
T cd05853 1 ESIVLPCQVSHD-HSLDIVFTWSFNGHLIDF-QKDGDHFERVGGQDSAGDLMIRSIQLKHA 59 (85)
T ss_pred CcEEEEEEeccC-CCCCcEEEEEECCEECcc-cCCCccEEEeccCCCCCcEEEecCCHHHC
Confidence 378999997531 122344699999988843 234668888 4789999999998875
No 15
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=97.29 E-value=0.00061 Score=44.89 Aligned_cols=67 Identities=12% Similarity=0.176 Sum_probs=44.8
Q ss_pred ceeecCeEEEEccCCCCccceeEEeEEccCC-eeeecC---cCCCceEEEc----cCccEEEEeEeeecCCcceeeeeeh
Q psy5692 18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-VNIYLN---TDTGGKYVVL----SSGDLYVQIRLSITGNLSVKKMKVE 89 (98)
Q Consensus 18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-~~I~p~---~~~dgKY~vl----psGeL~Ir~v~~~~~n~~~~~~~~~ 89 (98)
.|..|.+|.|.|.+...-... .+|...+ ..|+.. ...++||.+. .++.|.|++++.+|. ..=.|.+.
T Consensus 8 ~v~eG~~v~L~C~~~~~p~~~---v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~Ds--G~Y~C~~~ 82 (95)
T cd07701 8 TVVEGGTANLTCRVDQNDNTS---LQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDE--GQYTCSLF 82 (95)
T ss_pred EEecCCcEEEEEEEecCCceE---EEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccC--EEEEEEeE
Confidence 677999999999875442222 5798654 444422 1246899874 236799999999886 55666554
No 16
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=97.28 E-value=0.00057 Score=45.26 Aligned_cols=67 Identities=12% Similarity=0.201 Sum_probs=47.6
Q ss_pred EEeeeeceeecCeEEEEccCCCCccceeEEeEEccCC-eeeecCcCCCceEEEccCc---cEEEEeEeeecCCcceeeee
Q psy5692 12 NVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-VNIYLNTDTGGKYVVLSSG---DLYVQIRLSITGNLSVKKMK 87 (98)
Q Consensus 12 ~V~d~~~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-~~I~p~~~~dgKY~vlpsG---eL~Ir~v~~~~~n~~~~~~~ 87 (98)
...+. .+..|.+|.|.|.+...-. ...|..++ ..+.+ ++||.+.++| .|.|+++..+|. ..=.|.
T Consensus 6 ~~~~~-~v~~G~~v~l~C~~~G~P~----~v~W~k~~g~~~~~----~~r~~~~~~g~~~~L~I~~v~~~D~--G~Y~C~ 74 (92)
T cd05866 6 SLSKV-ELSVGESKFFTCTAIGEPE----SIDWYNPQGEKIVS----SQRVVVQKEGVRSRLTIYNANIEDA--GIYRCQ 74 (92)
T ss_pred Eecce-EEcCCCeEEEEEEEEEeCC----eEEEEeCCCeEecC----CCCEEEEeCCCeeEEEEecCChHHC--EEEEEE
Confidence 34454 6778999999999753321 45799765 55544 5789998888 799999988875 445555
Q ss_pred eh
Q psy5692 88 VE 89 (98)
Q Consensus 88 ~~ 89 (98)
..
T Consensus 75 A~ 76 (92)
T cd05866 75 AT 76 (92)
T ss_pred EE
Confidence 43
No 17
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=97.26 E-value=0.00083 Score=42.22 Aligned_cols=55 Identities=16% Similarity=0.301 Sum_probs=40.6
Q ss_pred cCeEEEEccCCCCccceeEEeEEccCC-----eee---------ecCcCCCceEEEccCccEEEEeEeeecC
Q psy5692 22 GNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNI---------YLNTDTGGKYVVLSSGDLYVQIRLSITG 79 (98)
Q Consensus 22 GNtAVLkC~IPs~V~d~V~V~SW~~Dd-----~~I---------~p~~~~dgKY~vlpsGeL~Ir~v~~~~~ 79 (98)
|-+++|.|.++. .-+.-..|.+.+ ..+ .+.....||+.+.++|.|.|++++.+|.
T Consensus 1 G~~VtL~c~~~~---~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~l~~~Ds 69 (92)
T cd05741 1 GESVTLPVSNLP---ENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPNGSLLIQNLTKEDS 69 (92)
T ss_pred CCcEEEEcccCC---CCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCCceEEEccCCchhc
Confidence 778999999875 344567787765 111 1223457899999999999999998885
No 18
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=97.24 E-value=0.0015 Score=42.39 Aligned_cols=76 Identities=12% Similarity=0.114 Sum_probs=50.6
Q ss_pred ceEEEEeeeeceeecCeEEEEccCCCCccceeEEeEEccCC--eeeecC-cCCCceEEEcc---CccEEEEeEeeecCCc
Q psy5692 8 KYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD--VNIYLN-TDTGGKYVVLS---SGDLYVQIRLSITGNL 81 (98)
Q Consensus 8 ~Yev~V~d~~~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd--~~I~p~-~~~dgKY~vlp---sGeL~Ir~v~~~~~n~ 81 (98)
|.-....+. .+..|.+|+|.|.+...-. -..+|.+.+ ..+.+. ...++||.+.+ .+.|.|++++.+|.
T Consensus 3 p~i~~~~~~-~~~~G~~v~l~C~~~G~P~---p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~-- 76 (98)
T cd05870 3 PHIIQLKNE-TTVENGAATLSCKAEGEPI---PEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDS-- 76 (98)
T ss_pred CEEEeeccE-EEcCCCcEEEEEecccCCC---CeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCC--
Confidence 334455666 8889999999999854432 247898854 333221 12467999875 35799999998875
Q ss_pred ceeeeeeh
Q psy5692 82 SVKKMKVE 89 (98)
Q Consensus 82 ~~~~~~~~ 89 (98)
..-.|...
T Consensus 77 G~Y~C~A~ 84 (98)
T cd05870 77 GRYDCEAA 84 (98)
T ss_pred EEEEEEEe
Confidence 35566543
No 19
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=97.22 E-value=0.0005 Score=44.66 Aligned_cols=66 Identities=17% Similarity=0.185 Sum_probs=45.3
Q ss_pred ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccC-------ccEEEEeEeeecCCcceeeeee
Q psy5692 18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSS-------GDLYVQIRLSITGNLSVKKMKV 88 (98)
Q Consensus 18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlps-------GeL~Ir~v~~~~~n~~~~~~~~ 88 (98)
++..|.+|.|.|.+-.+ .......|..++..|-+. .++||.+..+ +.|.|.+++.+|. ...-.|..
T Consensus 12 ~~~~G~~v~L~C~~~g~--P~P~~v~W~~~~~~i~~~--~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~-~G~Y~C~A 84 (98)
T cd05758 12 YAILGDKGRVECFIFST--PPPDRIVWTWKENELESG--SSGRYTVETDPSPGGVLSTLTISNTQESDF-QTSYNCTA 84 (98)
T ss_pred EEeCCCcEEEEEEEccc--CCCCEeEEEECCEEccCC--CCCCEEEEEecCCCceEEEEEECCcccccc-ceeEEEEE
Confidence 56799999999998533 223457899888766432 2479988765 3799999997651 23445543
No 20
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=97.21 E-value=0.00065 Score=43.55 Aligned_cols=62 Identities=13% Similarity=0.189 Sum_probs=45.6
Q ss_pred ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccC---ccEEEEeEeeecCCcceeeeee
Q psy5692 18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSS---GDLYVQIRLSITGNLSVKKMKV 88 (98)
Q Consensus 18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlps---GeL~Ir~v~~~~~n~~~~~~~~ 88 (98)
.+..|.++.|.|.+-.+-. -..+|.+++..+.+ +.||.+.++ +.|.|.+++.+|.- .-+|..
T Consensus 14 ~~~~G~~~~L~C~~~g~P~---p~v~W~k~g~~l~~----~~~~~~~~~~~~~~L~i~~~~~~D~G--~Y~C~a 78 (92)
T cd05747 14 TVSEGESARFSCDVDGEPA---PTVTWMREGQIIVS----SQRHQITSTEYKSTFEISKVQMSDEG--NYTVVV 78 (92)
T ss_pred EEeCCCcEEEEEEEeecCC---CEEEEEECCEECCC----CCcEEEEEcCCeeEEEECCCCcccCE--eEEEEE
Confidence 6779999999998754433 24899999876643 568888764 58999999887764 355544
No 21
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=97.18 E-value=0.00046 Score=42.21 Aligned_cols=55 Identities=15% Similarity=0.210 Sum_probs=40.2
Q ss_pred EEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecCCcceeeeee
Q psy5692 25 AVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITGNLSVKKMKV 88 (98)
Q Consensus 25 AVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~n~~~~~~~~ 88 (98)
+.|.|.+...-.- ..+|.+|+..|.+ +++|.+.++|.|.|.+++.+|. -.-.|..
T Consensus 1 v~L~C~~~g~P~p---~i~W~k~g~~~~~----~~~~~~~~~~~L~I~~~~~~D~--G~Y~C~a 55 (69)
T cd05746 1 VQIPCSAQGDPEP---TITWNKDGVQVTE----SGKFHISPEGYLAIRDVGVADQ--GRYECVA 55 (69)
T ss_pred CEeEecceEeCCC---EEEEEECCEECCC----CCCEEECCCCEEEECcCChhhC--EEEEEEE
Confidence 3689987544333 3689999876654 5899999999999999998875 2344543
No 22
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=97.16 E-value=0.00042 Score=43.02 Aligned_cols=57 Identities=16% Similarity=0.201 Sum_probs=40.2
Q ss_pred EEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecCCcceeeeee
Q psy5692 25 AVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITGNLSVKKMKV 88 (98)
Q Consensus 25 AVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~n~~~~~~~~ 88 (98)
|+|.|.+..+- .-..+|++++..|-+. .+++|.++++|.|.|++++..|. ..-.|..
T Consensus 1 a~l~C~~~G~P---~p~v~W~k~~~~~~~~--~~~~~~~~~~g~L~i~~~~~~D~--G~Y~C~a 57 (74)
T cd05738 1 ATMLCAASGNP---DPEITWFKDFLPVDTT--SNGRIKQLRSGALQIENSEESDQ--GKYECVA 57 (74)
T ss_pred CEEEEEEeEec---CCEEEEEECCEECccC--CCCCEEEcCCcEEEECCCChhhC--EEEEEEE
Confidence 68999864221 2367999998665321 36899999999999999987665 3444544
No 23
>smart00409 IG Immunoglobulin.
Probab=97.12 E-value=0.0013 Score=38.12 Aligned_cols=63 Identities=14% Similarity=0.211 Sum_probs=46.3
Q ss_pred ceeecCeEEEEccCCCCccceeEEeEEccC-CeeeecCcCCCceEEEccC---ccEEEEeEeeecCCcceeeeeeh
Q psy5692 18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQD-DVNIYLNTDTGGKYVVLSS---GDLYVQIRLSITGNLSVKKMKVE 89 (98)
Q Consensus 18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~D-d~~I~p~~~~dgKY~vlps---GeL~Ir~v~~~~~n~~~~~~~~~ 89 (98)
.+..|.++.|.|.+..+ -....+|.++ ...+.+ ++++...+. +.|.|++++..|+. .-.|.+.
T Consensus 5 ~~~~g~~~~l~C~~~~~---~~~~~~W~~~~~~~v~~----~~~~~~~~~~~~~~l~i~~~~~~d~G--~Y~C~v~ 71 (86)
T smart00409 5 TVKEGESVTLSCEVSGS---PPPEVTWYKQGGKLLAE----SGRFSVSRSGSNSTLTISNVTPEDSG--TYTCAAT 71 (86)
T ss_pred EEeCCCeEEEEEEEccC---CCCeEEEEECCCEEcCC----CCcEEEEEcCCeeEEEEEeeccccCe--EEEEEEE
Confidence 56789999999998865 3456778887 555543 567777665 68999999988873 4556554
No 24
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=97.12 E-value=0.0013 Score=38.12 Aligned_cols=63 Identities=14% Similarity=0.211 Sum_probs=46.3
Q ss_pred ceeecCeEEEEccCCCCccceeEEeEEccC-CeeeecCcCCCceEEEccC---ccEEEEeEeeecCCcceeeeeeh
Q psy5692 18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQD-DVNIYLNTDTGGKYVVLSS---GDLYVQIRLSITGNLSVKKMKVE 89 (98)
Q Consensus 18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~D-d~~I~p~~~~dgKY~vlps---GeL~Ir~v~~~~~n~~~~~~~~~ 89 (98)
.+..|.++.|.|.+..+ -....+|.++ ...+.+ ++++...+. +.|.|++++..|+. .-.|.+.
T Consensus 5 ~~~~g~~~~l~C~~~~~---~~~~~~W~~~~~~~v~~----~~~~~~~~~~~~~~l~i~~~~~~d~G--~Y~C~v~ 71 (86)
T smart00410 5 TVKEGESVTLSCEVSGS---PPPEVTWYKQGGKLLAE----SGRFSVSRSGSNSTLTISNVTPEDSG--TYTCAAT 71 (86)
T ss_pred EEeCCCeEEEEEEEccC---CCCeEEEEECCCEEcCC----CCcEEEEEcCCeeEEEEEeeccccCe--EEEEEEE
Confidence 56789999999998865 3456778887 555543 567777665 68999999988873 4556554
No 25
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=97.06 E-value=0.00076 Score=42.68 Aligned_cols=54 Identities=13% Similarity=0.086 Sum_probs=39.4
Q ss_pred ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecC
Q psy5692 18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITG 79 (98)
Q Consensus 18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~ 79 (98)
.+..|.+|.|.|.+...-. -..+|.+++..+.+ .+++. ++.|.|.|.+++.+|.
T Consensus 12 ~~~~g~~v~l~C~~~g~P~---p~v~W~k~~~~~~~----~~~~~-~~~~~L~i~~v~~~D~ 65 (88)
T cd04968 12 YALKGQNVTLECFALGNPV---PQIKWRKVDGSMPS----SAEIS-MSGAVLKIPNIQFEDE 65 (88)
T ss_pred EEeCCCcEEEEEEeeEeCC---CEEEEEECCCcCCC----ccEEE-EeCCEEEECCCCcccC
Confidence 5668999999999753322 35789998865544 23333 6889999999998874
No 26
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=97.05 E-value=0.0009 Score=41.21 Aligned_cols=56 Identities=7% Similarity=0.207 Sum_probs=40.6
Q ss_pred eEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecCCcceeeeee
Q psy5692 24 TAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITGNLSVKKMKV 88 (98)
Q Consensus 24 tAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~n~~~~~~~~ 88 (98)
.++|.|.+-..-. -..+|++++..+.| +.+|.+.+.|.|.|.+++.+|.- .-.|..
T Consensus 1 ~v~l~C~~~G~P~---p~v~W~k~g~~~~~----~~~~~~~~~~~l~i~~v~~~D~G--~Y~C~A 56 (71)
T cd05723 1 DVIFECEVTGKPT---PTVKWVKNGDMVIP----SDYFKIVKEHNLQVLGLVKSDEG--FYQCIA 56 (71)
T ss_pred CEEEEEEEEEeCC---CEEEEEECCeECCC----CCCEEEEecCCEEEEcCCcccCE--EEEEEE
Confidence 3789998743322 34699999976655 46888899999999999887743 345544
No 27
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.04 E-value=0.0025 Score=38.82 Aligned_cols=58 Identities=22% Similarity=0.293 Sum_probs=40.8
Q ss_pred cCeEEEEccCCCCccceeEEeEEccCC-eeeecCcCCCceEEEccCccEEEEeEeeecCCcceeeeee
Q psy5692 22 GNTAVLRCQIPSYMSEYIIVTSWIQDD-VNIYLNTDTGGKYVVLSSGDLYVQIRLSITGNLSVKKMKV 88 (98)
Q Consensus 22 GNtAVLkC~IPs~V~d~V~V~SW~~Dd-~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~n~~~~~~~~ 88 (98)
|.++.|.|.+...-. ....|..++ ..+ + .+.++.+.++|.|.|.++..+|. -+-.|..
T Consensus 1 G~~~~l~C~~~g~P~---p~v~W~~~~~~~~-~---~~~~~~~~~~~~L~i~~~~~~D~--G~Y~C~a 59 (74)
T cd05764 1 GQRATLRCKARGDPE---PAIHWISPDGKLI-S---NSSRTLVYDNGTLDILITTVKDT--GSFTCIA 59 (74)
T ss_pred CCeEEEEEEccCcCC---CEEEEEeCCCEEe-c---CCCeEEEecCCEEEEEECChhhC--EEEEEEE
Confidence 678999999754332 267999755 544 3 25789999999999999876553 3455544
No 28
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=97.03 E-value=0.0011 Score=42.00 Aligned_cols=70 Identities=11% Similarity=0.123 Sum_probs=47.1
Q ss_pred EeeeeceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCc-CCCceEEEccC---ccEEEEeEeeecCCcceeeeee
Q psy5692 13 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNT-DTGGKYVVLSS---GDLYVQIRLSITGNLSVKKMKV 88 (98)
Q Consensus 13 V~d~~~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~-~~dgKY~vlps---GeL~Ir~v~~~~~n~~~~~~~~ 88 (98)
..+. -+..|.+|.|.|.+..+-.. ..+|.+++..+.... ..+|+|.+.++ +.|.|++++.+|. ..-.|..
T Consensus 8 ~~~~-~~~~g~~v~l~C~~~g~p~p---~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~--G~Y~C~a 81 (96)
T cd05732 8 LENQ-TAVELEQITLTCEAEGDPIP---EITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDA--GRYDCEA 81 (96)
T ss_pred cCce-eEecCCcEEEEEEEeEcCCC---cEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcC--EEeEEEE
Confidence 3455 77899999999998644222 467999885543321 13678888653 5899999987765 3445543
No 29
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=96.99 E-value=0.0021 Score=39.88 Aligned_cols=66 Identities=18% Similarity=0.229 Sum_probs=44.7
Q ss_pred ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEE-ccCccEEEEeEeeecCCcceeeeeeh
Q psy5692 18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVV-LSSGDLYVQIRLSITGNLSVKKMKVE 89 (98)
Q Consensus 18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~v-lpsGeL~Ir~v~~~~~n~~~~~~~~~ 89 (98)
-|-.|+++.|.|.+..+-. ...+|++++..|-+.... ++|.. ...+.|.|.+++.+|. ..-.|.++
T Consensus 5 ~v~~G~~~~L~C~~~g~P~---p~i~W~k~g~~l~~~~~~-~~~~~~~~~~~l~i~~~~~~D~--G~Y~C~a~ 71 (85)
T cd05857 5 AVPAANTVKFRCPAAGNPT---PTMRWLKNGKEFKQEHRI-GGYKVRNQHWSLIMESVVPSDK--GNYTCVVE 71 (85)
T ss_pred EcCCCCEEEEEEEcCCCCC---CEEEEEECCEECCCCCce-eeeEEeCCceEEEEccCCcccC--EEEEEEEE
Confidence 4668999999999875532 357999999776543221 23333 3466799999988775 45566654
No 30
>KOG4221|consensus
Probab=96.97 E-value=0.00078 Score=63.20 Aligned_cols=65 Identities=18% Similarity=0.414 Sum_probs=54.6
Q ss_pred ceEEEEeeeeceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecCC
Q psy5692 8 KYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITGN 80 (98)
Q Consensus 8 ~Yev~V~d~~~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~n 80 (98)
.+..+.++. .+..|++|.|+|.|-+ +=+...-|.+++..| | .|+|+.+||||-|.|.++|.-|+-
T Consensus 142 ~f~~~~~~~-t~~~g~ta~f~c~vn~---e~~p~i~w~kn~~pl-~---~~~r~i~lpsG~L~I~~~qp~d~g 206 (1381)
T KOG4221|consen 142 DFALQPEST-TLLYGQTALFSCEVNA---EPVPTIMWLKNDQPL-P---LDSRVIVLPSGALEISGLQPSDTG 206 (1381)
T ss_pred ccccCccce-eEecCCcEEEEEEEcC---ccCceeEEecccccc-c---CCCcEEEcCCCcEEecccccCCCc
Confidence 477788888 9999999999999864 556678899999754 3 467999999999999999987763
No 31
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=96.97 E-value=0.0012 Score=41.99 Aligned_cols=64 Identities=11% Similarity=0.183 Sum_probs=46.3
Q ss_pred eeeeceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecCCcceeeeee
Q psy5692 14 NYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITGNLSVKKMKV 88 (98)
Q Consensus 14 ~d~~~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~n~~~~~~~~ 88 (98)
.+. .+..|.+|.|.|.+..+-. ...+|.+++..|.+ ++++.+ .+|.|.|.+++.+|.. .-+|..
T Consensus 7 ~~~-~~~~G~~~~l~C~~~g~p~---p~v~W~k~g~~~~~----~~~~~~-~~~~L~i~~~~~~D~G--~Y~C~a 70 (85)
T cd05728 7 SDT-EADIGSSLRWECKASGNPR---PAYRWLKNGQPLAS----ENRIEV-EAGDLRITKLSLSDSG--MYQCVA 70 (85)
T ss_pred Ccc-EEcCCCcEEEEEEeeEeCC---CEEEEEECCEECCC----CCeEEE-eCCEEEEeeCCHHHCE--EEEEEE
Confidence 444 6779999999999854432 25889999876533 457665 5889999999988753 455544
No 32
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=96.95 E-value=0.0013 Score=40.71 Aligned_cols=61 Identities=23% Similarity=0.274 Sum_probs=42.3
Q ss_pred cCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecCCcceeeeeeh
Q psy5692 22 GNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITGNLSVKKMKVE 89 (98)
Q Consensus 22 GNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~n~~~~~~~~~ 89 (98)
|.++.|.|.+...-. -..+|..++..|.+. ..+++|. ..+|.|.|++++.+|. .+-.|...
T Consensus 1 G~~v~l~C~~~G~P~---p~i~W~k~g~~i~~~-~~~~~~~-~~~~~L~I~~~~~~D~--G~Y~C~a~ 61 (76)
T cd05867 1 GETARLDCQVEGIPT---PNITWSINGAPIEGT-DPDPRRH-VSSGALILTDVQPSDT--AVYQCEAR 61 (76)
T ss_pred CCeEEEEEEeeEeCC---CeEEEEECCEECCCC-CCCceEE-eeCCEEEECCCChhhC--EEEEEEEE
Confidence 789999999753322 256999998766542 2244665 4789999999998875 35556543
No 33
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=96.95 E-value=0.0018 Score=42.71 Aligned_cols=66 Identities=14% Similarity=0.183 Sum_probs=43.5
Q ss_pred ceeecCeEEEEccCCCC----ccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecCCcceeeeee
Q psy5692 18 NVILGNTAVLRCQIPSY----MSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITGNLSVKKMKV 88 (98)
Q Consensus 18 ~VirGNtAVLkC~IPs~----V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~n~~~~~~~~ 88 (98)
+|..|+++.|+|.+... -.+. ...|.+++..+......+.|+.. ..|.|.|.+++.+|.- +=.|.+
T Consensus 10 ~v~~G~~~~L~C~~~g~~~~~~p~~--~v~Wyk~~~~~~~~~~~~~r~~~-~~~~L~I~~~~~~DsG--~Y~C~~ 79 (94)
T cd05756 10 YVLEGEPVVIKCPLFYSYIAQSPGL--NLTWYKSDGKTPIPTEERSRMHQ-QKDLLWFLPAALEDSG--LYTCVV 79 (94)
T ss_pred EEecCCCeEEECCCCCcccccCCCc--eEEEEEcCCCCcccccccceeee-cCCeEEEccCCcccCe--EEEEEE
Confidence 78899999999986642 1233 27899998443211223456544 4688999999988863 455544
No 34
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=96.90 E-value=0.0018 Score=42.49 Aligned_cols=66 Identities=14% Similarity=0.158 Sum_probs=42.6
Q ss_pred ceeecCeEEEEccCCCCccceeEEeEEccCC--eeeecCcCCCceEEEccCccEEEEeEeeecCCcceeeeeehH
Q psy5692 18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD--VNIYLNTDTGGKYVVLSSGDLYVQIRLSITGNLSVKKMKVEE 90 (98)
Q Consensus 18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd--~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~n~~~~~~~~~~ 90 (98)
+++.|++|.|.|. ++. ... ..+|.+++ .........+++|... .|.|.|++++.+|. .+-.|...+
T Consensus 7 ~~~eG~~v~L~C~-~~~--p~p-~v~Wykq~~g~~~~~~~~~~~r~~~~-~~~L~I~~~~~~Ds--G~Y~C~a~~ 74 (91)
T cd05871 7 YGVENNSTFLECL-PKS--PQA-SVKWLFQRGGDQRKEEVKTEERLIHT-ERGLLLRSLQRSDA--GVYTCTAVE 74 (91)
T ss_pred EEecCCcEEEEEE-CCC--CCc-eEEEEEECCCCCccccccccccEEEe-cCeEEEeeCChhHC--EEEEEEEEc
Confidence 5789999999999 442 333 35898754 1111111135788764 46699999988775 666776653
No 35
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=96.88 E-value=0.01 Score=36.90 Aligned_cols=69 Identities=19% Similarity=0.297 Sum_probs=46.7
Q ss_pred ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecC-cCCCceEEEccCccEEEEeEee---ecCCcceeeeeeh
Q psy5692 18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLN-TDTGGKYVVLSSGDLYVQIRLS---ITGNLSVKKMKVE 89 (98)
Q Consensus 18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~-~~~dgKY~vlpsGeL~Ir~v~~---~~~n~~~~~~~~~ 89 (98)
.+..|.++.|.|.+..+-.. ...|++++..+.+. .+.+.++.++++|.|++..+.. ....+..-.|...
T Consensus 12 ~v~~G~~~~l~C~~~g~P~p---~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~C~a~ 84 (100)
T cd07693 12 IVSKGDPATLNCKAEGRPTP---TIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYVCVAH 84 (100)
T ss_pred EEcCCCeEEEEeeCCcCCCC---EEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEEEEEE
Confidence 56789999999998765433 56899999766442 2235567788999988766532 2344556666554
No 36
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=96.87 E-value=0.0011 Score=41.67 Aligned_cols=59 Identities=12% Similarity=0.253 Sum_probs=42.4
Q ss_pred ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecCCcceeeee
Q psy5692 18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITGNLSVKKMK 87 (98)
Q Consensus 18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~n~~~~~~~ 87 (98)
.+..|-++.|.|.+... ..-..|..++..|.+ +++|.+. .+.|.|.+++.+|. ..-.|.
T Consensus 5 ~~~~G~~v~l~C~~~~~----~~~v~W~k~g~~l~~----~~~~~~~-~~~L~I~~~~~~Ds--G~Y~C~ 63 (79)
T cd04973 5 SAHPGDLLQLRCRLRDD----VQSINWTKDGVQLGE----NNRTRIT-GEEVQIKDAVPRDS--GLYACV 63 (79)
T ss_pred EecCCCCEEEEEEecCC----CceEEEeeCCcCCCC----CceEEEe-CCEEEECCCChhhC--EEEEEE
Confidence 46689999999998753 235789999866633 5677764 56799999988764 444444
No 37
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=96.87 E-value=0.0017 Score=40.89 Aligned_cols=54 Identities=22% Similarity=0.359 Sum_probs=36.0
Q ss_pred eEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceE----EEccCccEEEEeEeeecC
Q psy5692 24 TAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKY----VVLSSGDLYVQIRLSITG 79 (98)
Q Consensus 24 tAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY----~vlpsGeL~Ir~v~~~~~ 79 (98)
++.|.|.+...-.--+ .+.|..++..|... ..+++| ....+|.|.|++++..|.
T Consensus 2 ~~~L~C~~~g~P~p~i-~~~W~~~g~~i~~~-~~~~~~~~~~~~~~~~~L~I~~v~~~D~ 59 (85)
T cd04970 2 SITLQCHASHDPTLDL-TFTWSFNGVPIDFD-KDGGHYRRVGGKDSNGDLMIRNAQLKHA 59 (85)
T ss_pred cEEEEEEEecCCCCCe-EEEEEECCeEeecc-CCCccEEEEecccccceEEEccCCHHhC
Confidence 5899999864433223 36899998766432 223443 334689999999998765
No 38
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=96.83 E-value=0.0025 Score=41.07 Aligned_cols=63 Identities=21% Similarity=0.189 Sum_probs=45.3
Q ss_pred ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEcc---CccEEEEeEeeecCCcceeeeee
Q psy5692 18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLS---SGDLYVQIRLSITGNLSVKKMKV 88 (98)
Q Consensus 18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlp---sGeL~Ir~v~~~~~n~~~~~~~~ 88 (98)
.|..|.++.|.|.+..+ =.-..+|++++..|.+ .++||.+.. .+.|.|++++.+|. ..-.|..
T Consensus 6 ~v~~G~~v~l~c~~~G~---P~P~v~W~k~~~~i~~---~~~r~~~~~~~~~~~L~I~~~~~~D~--G~Y~c~a 71 (86)
T cd05894 6 VVVAGNKLRLDVPISGE---PAPTVTWSRGDKAFTE---TEGRVRVESYKDLSSFVIEGAEREDE--GVYTITV 71 (86)
T ss_pred EEEcCCEEEEEeeEeec---CCCeEEEEECCEECcc---CCCeEEEEEcCCeEEEEECCCccCcC--EEEEEEE
Confidence 56799999999987433 2347789999977754 256887764 36799999998885 3444543
No 39
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=96.82 E-value=0.0016 Score=40.43 Aligned_cols=64 Identities=13% Similarity=0.250 Sum_probs=47.2
Q ss_pred ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEc---cCccEEEEeEeeecCCcceeeeeehH
Q psy5692 18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVL---SSGDLYVQIRLSITGNLSVKKMKVEE 90 (98)
Q Consensus 18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vl---psGeL~Ir~v~~~~~n~~~~~~~~~~ 90 (98)
.+..|.++.|.|.+... .. ....|.+++..|.. +++|.+. .+..|.|.+++..|. ..-+|.++.
T Consensus 11 ~v~~G~~~~l~c~~~~~-p~--~~v~W~~~~~~l~~----~~~~~~~~~~~~~~L~I~~v~~~D~--G~Y~C~~~n 77 (90)
T PF07679_consen 11 TVKEGESVTLECEVSGN-PP--PTVTWYKNGRPLTS----SQRYQIESDGGSSSLTIKNVTREDA--GTYTCVASN 77 (90)
T ss_dssp EEETTSEEEEEEEEEES-SS--SEEEEEETTEEEES----SSSEEEEEETTEEEEEESSESGGGS--EEEEEEEEE
T ss_pred EEeCCCEEEEEEEEEeC-CC--Ccccccccccceee----eeeeeeecccceeEEccCCCChhhC--EEEEEEEEE
Confidence 67789999999998644 12 25569999987765 5677665 477899999998776 466666643
No 40
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=96.82 E-value=0.0017 Score=39.36 Aligned_cols=54 Identities=11% Similarity=0.202 Sum_probs=38.9
Q ss_pred EEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecCCcceeeeee
Q psy5692 25 AVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITGNLSVKKMKV 88 (98)
Q Consensus 25 AVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~n~~~~~~~~ 88 (98)
|.|.|.+...-.- ...|.+++..+ | .+++.+.+++.|.|++++.+|.- .-.|..
T Consensus 1 v~l~C~~~g~P~p---~v~W~k~~~~~-~----~~~~~~~~~~~L~I~~v~~~D~G--~Y~C~a 54 (69)
T cd05725 1 VEFQCEVGGDPVP---TVLWRKEDGEL-P----KGRAEILDDKSLKIRNVTAGDEG--SYTCEA 54 (69)
T ss_pred CEEEEECccCCCC---EEEEEECCccC-C----CCcEEEeeCCEEEECcCChhHCE--EEEEEE
Confidence 5799998544332 47999997544 2 57899999999999999988753 344443
No 41
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=96.82 E-value=0.0027 Score=40.86 Aligned_cols=68 Identities=10% Similarity=0.061 Sum_probs=46.4
Q ss_pred EEEEeeeeceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecCCcceeeeee
Q psy5692 10 EINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITGNLSVKKMKV 88 (98)
Q Consensus 10 ev~V~d~~~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~n~~~~~~~~ 88 (98)
.+...+. .+..|.++.|.|.+...-.- ..+|.+++..+.+ +.++.+ ..+.|.|++++.+|.- .-.|..
T Consensus 5 ~~~~~~~-~~~~G~~v~l~C~~~G~P~P---~v~W~k~~~~~~~----~~~~~~-~~~~L~I~~v~~~D~G--~Y~C~A 72 (88)
T cd05851 5 NVKFKDT-YALKGQNVTLECFALGNPVP---VIRWRKILEPMPA----TAEISM-SGAVLKIFNIQPEDEG--TYECEA 72 (88)
T ss_pred EEccccE-EEeCCCcEEEEEEecccCCC---EEEEEECCcCCCC----CCEEec-CCCEEEECcCChhhCE--EEEEEE
Confidence 3455566 78899999999998544333 5899999855422 334443 4668999999887764 344543
No 42
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=96.69 E-value=0.007 Score=33.54 Aligned_cols=58 Identities=12% Similarity=0.142 Sum_probs=39.2
Q ss_pred ecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecCCcceeeeee
Q psy5692 21 LGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITGNLSVKKMKV 88 (98)
Q Consensus 21 rGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~n~~~~~~~~ 88 (98)
.|.++.|.|..+++... ..+|.++...+. +......+++.|.|.+++..|. ..-.|.+
T Consensus 1 ~g~~~~l~C~~~~~~~~---~v~W~~~~~~~~-----~~~~~~~~~~~L~i~~~~~~d~--G~Y~C~~ 58 (63)
T smart00408 1 EGQSVTLTCPAEGDPVP---NITWLKDGKPLP-----ESNRLSASGSTLTIKSVSLEDS--GEYTCVA 58 (63)
T ss_pred CCceEEEEeeCccCCCC---eEEEEECCEECC-----CCCEEecCCcEEEEeeCCcccC--EEEEEEE
Confidence 38899999996544332 468999875553 2344455788999999987664 3455544
No 43
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=96.65 E-value=0.0048 Score=39.98 Aligned_cols=62 Identities=13% Similarity=0.203 Sum_probs=42.9
Q ss_pred ceeecCeEEEEccCCCCccceeEEeEEccCC-eeeecCcCCCceEEEccCc----cEEEEeEeeecCCcceeeeeeh
Q psy5692 18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-VNIYLNTDTGGKYVVLSSG----DLYVQIRLSITGNLSVKKMKVE 89 (98)
Q Consensus 18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-~~I~p~~~~dgKY~vlpsG----eL~Ir~v~~~~~n~~~~~~~~~ 89 (98)
.+..|.++.|.|.+..+ . ...+|...+ ..+.+ .+++.+..+| .|.|++++.+|. -.-+|...
T Consensus 11 ~v~~G~~~~l~C~~~G~-p---~~i~W~~~~~~~~~~----~~~~~~~~~~~~~~~L~I~~v~~~D~--G~Y~C~A~ 77 (92)
T cd04977 11 EISVGESKFFLCQVIGE-P---KDISWFSPNGEKLVT----QQQISVVQNDDVRSTLTIYNANIEDA--GIYKCVAT 77 (92)
T ss_pred EECCCCeEEEEEEeEee-C---CeEEEECCCCCEecc----CCCEEEEeCCCCEEEEEEecCCcccC--EEEEEEEE
Confidence 57789999999998655 2 257899744 55544 3455555444 799999998875 35666554
No 44
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=96.65 E-value=0.0046 Score=41.75 Aligned_cols=59 Identities=12% Similarity=0.289 Sum_probs=40.7
Q ss_pred ceeecCeEEEEccCCCCccceeEEeEEccCC-eeeecCc---CCCceEEEcc-Ccc---EEEEeEeeecC
Q psy5692 18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-VNIYLNT---DTGGKYVVLS-SGD---LYVQIRLSITG 79 (98)
Q Consensus 18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-~~I~p~~---~~dgKY~vlp-sGe---L~Ir~v~~~~~ 79 (98)
-|..|.+|.|.|.+.+.-..+ ..|..-+ ..|+-.. -.+.||.+.. +|. |.|++++.+|+
T Consensus 8 tv~~G~ta~L~C~v~~~~~~~---v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~ 74 (95)
T cd05881 8 TVVEGEVAIISCRVKNNDDSV---IQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDE 74 (95)
T ss_pred EEcCCCcEEEEEEEccCCccE---EEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccC
Confidence 456899999999998665333 3576555 4443211 1478998875 554 89999999886
No 45
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=96.63 E-value=0.0076 Score=36.82 Aligned_cols=62 Identities=18% Similarity=0.256 Sum_probs=41.2
Q ss_pred cCeEEEEccCCCCccceeEEeEEccCC----eeeecCcCCCceEEEccCccEEEEeEeeecCCcceeeeee
Q psy5692 22 GNTAVLRCQIPSYMSEYIIVTSWIQDD----VNIYLNTDTGGKYVVLSSGDLYVQIRLSITGNLSVKKMKV 88 (98)
Q Consensus 22 GNtAVLkC~IPs~V~d~V~V~SW~~Dd----~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~n~~~~~~~~ 88 (98)
|.++.|.|.+...-.. ..+|.++. ..+.......+++.+...|.|.|.+++.+|. .+-.|..
T Consensus 1 G~~v~l~C~~~g~P~p---~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~--G~Y~C~a 66 (81)
T cd05765 1 GETASFHCDVTGRPPP---EITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDA--GLYTCTA 66 (81)
T ss_pred CCcEEEEeeccccCCC---cEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccC--EEEEEEE
Confidence 7899999998654433 46898863 1121212234678888889999999998874 3444543
No 46
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=96.63 E-value=0.0031 Score=40.50 Aligned_cols=62 Identities=23% Similarity=0.325 Sum_probs=42.6
Q ss_pred ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccC-c---cEEEEeEeeecCCcceeeeee
Q psy5692 18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSS-G---DLYVQIRLSITGNLSVKKMKV 88 (98)
Q Consensus 18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlps-G---eL~Ir~v~~~~~n~~~~~~~~ 88 (98)
.+..|.++.|.|.+..+-.- -.+|++++..+.+ +++|.+..+ | .|.|.+++.+|.- .-.|..
T Consensus 12 ~v~~G~~v~L~C~v~G~P~p---~v~W~k~g~~l~~----~~~~~~~~~~~~~~~L~I~~v~~~D~G--~Y~C~a 77 (92)
T cd05737 12 TIMEGKTLNLTCTVFGDPDP---EVSWLKNDQALAL----SDHYNVKVEQGKYASLTIKGVSSEDSG--KYGIVV 77 (92)
T ss_pred EEeCCCcEEEEEEEEecCCC---eEEEEECCEECcc----CCCEEEEEcCCCEEEEEEccCChhhCE--EEEEEE
Confidence 35689999999997544322 3679999876644 456766533 3 6999999988753 344544
No 47
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=96.61 E-value=0.0028 Score=39.44 Aligned_cols=60 Identities=20% Similarity=0.252 Sum_probs=40.1
Q ss_pred EEEEccCCCCccceeEEeEEccCCeeeec----CcCCCceEEEccCccEEEEeEeeecCCcceeeeeeh
Q psy5692 25 AVLRCQIPSYMSEYIIVTSWIQDDVNIYL----NTDTGGKYVVLSSGDLYVQIRLSITGNLSVKKMKVE 89 (98)
Q Consensus 25 AVLkC~IPs~V~d~V~V~SW~~Dd~~I~p----~~~~dgKY~vlpsGeL~Ir~v~~~~~n~~~~~~~~~ 89 (98)
++|.|.+..+-.. ..+|.+++....| ....++|+.+.++|.|+|++++.+| +..-.|...
T Consensus 1 v~l~C~~~G~P~P---~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~I~~v~~~D--~G~Y~C~a~ 64 (79)
T cd05734 1 VTLNCSAEGYPPP---TIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEED--SGYYLCKVS 64 (79)
T ss_pred CEeEeeCeEeCCC---EEEEEECCCccccccccccccCCCEEEecCCeEEECcCCccc--CEEEEEEEE
Confidence 5799987644333 4689987522212 1125789999999999999998765 345566543
No 48
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=96.59 E-value=0.0062 Score=40.01 Aligned_cols=58 Identities=17% Similarity=0.173 Sum_probs=41.6
Q ss_pred eecCeEEEEccCCCCccceeEEeEEccCC-eee-ecC-----------cCCCceEEEcc-CccEEEEeEeeecC
Q psy5692 20 ILGNTAVLRCQIPSYMSEYIIVTSWIQDD-VNI-YLN-----------TDTGGKYVVLS-SGDLYVQIRLSITG 79 (98)
Q Consensus 20 irGNtAVLkC~IPs~V~d~V~V~SW~~Dd-~~I-~p~-----------~~~dgKY~vlp-sGeL~Ir~v~~~~~ 79 (98)
+.|.+++|.|.++. .+-....+|.+.. ..+ .+. ....+|+.+.+ ++.|.|++++.+|.
T Consensus 2 ~~G~sVtL~c~~~~--~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~Ds 73 (97)
T cd05775 2 ILGGSVTLPLNIPD--GTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDA 73 (97)
T ss_pred ccCCeEEEeCCCCC--CcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHC
Confidence 47999999999874 3566789999865 222 221 12236788877 59999999998885
No 49
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=96.56 E-value=0.005 Score=39.30 Aligned_cols=62 Identities=16% Similarity=0.250 Sum_probs=43.5
Q ss_pred ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCc-cEEEEeEeeecCCcceeeee
Q psy5692 18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSG-DLYVQIRLSITGNLSVKKMK 87 (98)
Q Consensus 18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsG-eL~Ir~v~~~~~n~~~~~~~ 87 (98)
.+..|.+|.|.|.+..+-. ....|.+++..+.+ .+.+|....+| .|.|.++..+|. ..-.|.
T Consensus 14 ~~~~G~~v~L~C~~~g~P~---p~v~W~k~g~~~~~---~~~~~~~~~~~~~L~I~~v~~~D~--G~Y~C~ 76 (95)
T cd05730 14 TANLGQSVTLACDADGFPE---PTMTWTKDGEPIES---GEEKYSFNEDGSEMTILDVDKLDE--AEYTCI 76 (95)
T ss_pred EEeCCCCEEEEEeccEeCC---CEEEEEECCEECcC---CCCEEEEeCCCCEEEECCCChhhC--EEEEEE
Confidence 3568999999999865433 24679999876644 24688777665 599999987773 344443
No 50
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=96.54 E-value=0.0065 Score=38.95 Aligned_cols=68 Identities=13% Similarity=0.247 Sum_probs=45.2
Q ss_pred ceeecCeEEEEccCCCCccceeEEeEEccCC-eeeecCc---CCCceEEEcc----CccEEEEeEeeecCCcceeeeeeh
Q psy5692 18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-VNIYLNT---DTGGKYVVLS----SGDLYVQIRLSITGNLSVKKMKVE 89 (98)
Q Consensus 18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-~~I~p~~---~~dgKY~vlp----sGeL~Ir~v~~~~~n~~~~~~~~~ 89 (98)
.|..|.+|.|.|.+... .. ....|..-+ ..|+... ..++||.+.. ++.|.|++++.+|. ..=.|.+.
T Consensus 8 ~v~~G~~v~L~C~~~~~--~~-~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~Ds--G~Y~C~~~ 82 (95)
T cd05717 8 TVVEGGTATLKCRVKNN--DN-SSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDE--GRYTCSLY 82 (95)
T ss_pred EEcCCCCEEEEEEECCC--CC-ceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccC--EEEEEEEe
Confidence 56789999999997543 22 357797544 4443221 1357998853 35699999999886 56667654
Q ss_pred H
Q psy5692 90 E 90 (98)
Q Consensus 90 ~ 90 (98)
.
T Consensus 83 ~ 83 (95)
T cd05717 83 T 83 (95)
T ss_pred c
Confidence 3
No 51
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=96.50 E-value=0.0039 Score=40.71 Aligned_cols=60 Identities=7% Similarity=0.045 Sum_probs=44.1
Q ss_pred ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEcc-CccEEEEeEeeecCCcceeeeee
Q psy5692 18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLS-SGDLYVQIRLSITGNLSVKKMKV 88 (98)
Q Consensus 18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlp-sGeL~Ir~v~~~~~n~~~~~~~~ 88 (98)
-|..|.++.|.|.+... ....+|.+++..+.+ +++.+.+ .+.|.|.+++.+|. ..-.|..
T Consensus 14 ~v~~g~~v~l~C~a~g~----~p~i~W~kng~~l~~-----~~~~~~~~~~~L~I~~v~~~D~--G~Y~C~a 74 (91)
T cd05740 14 PPEDNQPVTLTCEAEGQ----ATYIWWVNNGSLLVP-----PRLQLSNDNRTLTFNNVTRSDT--GHYQCEA 74 (91)
T ss_pred ccccCCcEEEEEEeCCC----CCEEEEEECCEECCC-----CCEEEeCCCCEEEECcCChhhC--EEEEEEE
Confidence 45679999999998755 455689999866533 5676664 47999999988775 5555554
No 52
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=96.49 E-value=0.0052 Score=41.71 Aligned_cols=57 Identities=18% Similarity=0.269 Sum_probs=39.9
Q ss_pred ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccC-------ccEEEEeEeeec
Q psy5692 18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSS-------GDLYVQIRLSIT 78 (98)
Q Consensus 18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlps-------GeL~Ir~v~~~~ 78 (98)
++.+|-+|.|.|.+-|+-.--..+|+|... .|.++ ..+||.+..+ =+|.|+++...|
T Consensus 12 ~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~--~i~~~--~~~r~~I~~~~~~~g~~S~L~I~~~~~~d 75 (98)
T cd05898 12 YAVRGERGKVKCFIGSTPPPDRIAWAWKEN--VLESG--TSERYTVERTSTGSGVLSTLTINNIMEAD 75 (98)
T ss_pred EEeCCCcEEEEEEEccCCCCcEEEEEEccc--cccCC--CCCCEEEEEEccCCCcEEEEEECCCcccc
Confidence 788999999999996666655567788765 33232 2579988532 368898885433
No 53
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=96.46 E-value=0.0064 Score=36.84 Aligned_cols=61 Identities=16% Similarity=0.178 Sum_probs=41.4
Q ss_pred cCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecCCcceeeeeeh
Q psy5692 22 GNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITGNLSVKKMKVE 89 (98)
Q Consensus 22 GNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~n~~~~~~~~~ 89 (98)
|.++.|.|.+...-. -..+|..++..|.+... ........|.|.|++++.+|. ..-.|...
T Consensus 1 G~~~~l~C~~~g~P~---p~i~W~~~g~~~~~~~~--~~~~~~~~~~L~i~~v~~~D~--G~Y~C~A~ 61 (76)
T cd04978 1 GETGRLDCEAEGIPQ---PTITWRLNGVPIEELPP--DPRRRVDGGTLILSNVQPNDT--AVYQCNAS 61 (76)
T ss_pred CCeEEEEEEceeeCC---CEEEEEECCEECCCCCC--cceEEccCCEEEECCCChhhC--EEEEEEEE
Confidence 789999998753322 24789999876654221 134556789999999998765 45666543
No 54
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=96.43 E-value=0.0044 Score=41.00 Aligned_cols=57 Identities=11% Similarity=0.068 Sum_probs=40.3
Q ss_pred ceeecCeEEEEccCCCCccc--eeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecC
Q psy5692 18 NVILGNTAVLRCQIPSYMSE--YIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITG 79 (98)
Q Consensus 18 ~VirGNtAVLkC~IPs~V~d--~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~ 79 (98)
.+..|.++.|+|.....-.+ ----..|.+|...|-. +.+. +...|.|.|++++.+|.
T Consensus 6 ~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~----~~~~-~~~~~~L~I~~v~~~Ds 64 (92)
T cd05757 6 ILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEG----DRKR-FVKGSKLLIQNVTEEDA 64 (92)
T ss_pred EEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCC----CccE-EecCCEEEEeeCChhhC
Confidence 67789999999986533222 1225689999976632 2333 33899999999998885
No 55
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=96.36 E-value=0.0088 Score=36.69 Aligned_cols=58 Identities=12% Similarity=0.143 Sum_probs=38.9
Q ss_pred EEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEcc-CccEEEEeEeeecCCcceeeeee
Q psy5692 25 AVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLS-SGDLYVQIRLSITGNLSVKKMKV 88 (98)
Q Consensus 25 AVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlp-sGeL~Ir~v~~~~~n~~~~~~~~ 88 (98)
|.|.|.+..+-.- ..+|.+++..+.|. ..+.++.+.+ .|.|.|.+++.+|. ..-.|..
T Consensus 1 a~l~C~~~G~P~P---~v~W~k~~~~~~~~-~~~~~~~~~~~~~~L~I~~~~~~D~--G~Y~C~A 59 (75)
T cd05763 1 ARLECAATGHPTP---QIAWQKDGGTDFPA-ARERRMHVMPEDDVFFIVDVKIEDT--GVYSCTA 59 (75)
T ss_pred CEeEeecccccCC---EEEEEeCCCccCCc-ccccceEEecCCCEEEEeeCCcccC--EEEEEEE
Confidence 6899987543332 47999998544442 2356888876 47899999998874 3445543
No 56
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=96.36 E-value=0.004 Score=38.83 Aligned_cols=58 Identities=12% Similarity=0.180 Sum_probs=39.9
Q ss_pred cCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccC---ccEEEEeEeeecCCcceeeeee
Q psy5692 22 GNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSS---GDLYVQIRLSITGNLSVKKMKV 88 (98)
Q Consensus 22 GNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlps---GeL~Ir~v~~~~~n~~~~~~~~ 88 (98)
|.++.|.|.+..+-. -...|..++..+. .+.||.+..+ |.|.|+++..+|. ..-.|..
T Consensus 1 G~~v~l~C~~~g~P~---p~v~W~~~~~~~~----~~~~~~~~~~~~~~~L~I~~v~~~D~--G~Y~C~a 61 (78)
T cd05743 1 GETVEFTCVATGVPT---PIINWRLNWGHVP----DSARVSITSEGGYGTLTIRDVKESDQ--GAYTCEA 61 (78)
T ss_pred CCEEEEEEEEEEecC---CEEEEEECCeECC----CCCCEEEEECCCEEEEEECCCChHHC--EEEEEEE
Confidence 789999999844332 2567999886552 2467777653 6799999998884 2455544
No 57
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=96.31 E-value=0.007 Score=39.91 Aligned_cols=55 Identities=18% Similarity=0.240 Sum_probs=41.9
Q ss_pred ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEcc---CccEEEEeEeeecC
Q psy5692 18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLS---SGDLYVQIRLSITG 79 (98)
Q Consensus 18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlp---sGeL~Ir~v~~~~~ 79 (98)
.|..|.++.|.|.+.. +---...|.+|+..|-+ +.+|.+.. ++.|.|++++.+|.
T Consensus 11 ~v~~G~~v~l~C~~~G---~p~p~v~W~kdg~~l~~----~~~~~~~~~~~~s~L~I~~~~~~D~ 68 (98)
T cd05762 11 KVRAGESVELFCKVTG---TQPITCTWMKFRKQIQE----GEGIKIENTENSSKLTITEGQQEHC 68 (98)
T ss_pred EEECCCEEEEEEEEcc---cCCCceEEEECCEEecC----CCcEEEEecCCeeEEEECCCChhhC
Confidence 6779999999999853 33345899999977743 45677663 67799999988876
No 58
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=96.26 E-value=0.01 Score=38.57 Aligned_cols=72 Identities=13% Similarity=0.172 Sum_probs=43.1
Q ss_pred eeceEEEEeeeeceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEee-ecCCccee
Q psy5692 6 KQKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLS-ITGNLSVK 84 (98)
Q Consensus 6 ~Q~Yev~V~d~~~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~-~~~n~~~~ 84 (98)
.||-.+.+... ..|++|.|.|.+...-. ...+|.+++..|... .+.+|. +.+|.|+|.++.. .| .-.-
T Consensus 6 ~~P~~~~~~~~---~~g~~v~l~C~a~g~P~---p~i~W~~~g~~l~~~--~~~~~~-~~~g~L~I~~~~~~~D--~G~Y 74 (94)
T cd05850 6 EQPSSLLFPEG---SPEEKVTLGCRARASPP---ATYRWKMNGTEIKFA--PESRYT-LVAGNLVINNPQKARD--AGSY 74 (94)
T ss_pred ECCCCEEecCC---CCCCeEEEEeEceeCCC---CEEEEEECCEECccC--CCceEE-EECCeEEEccCCccCc--CEEE
Confidence 34545544321 24789999999843322 257999998766321 234554 4689999988643 33 3334
Q ss_pred eeee
Q psy5692 85 KMKV 88 (98)
Q Consensus 85 ~~~~ 88 (98)
+|..
T Consensus 75 ~C~A 78 (94)
T cd05850 75 QCLA 78 (94)
T ss_pred EEEE
Confidence 5543
No 59
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=96.24 E-value=0.012 Score=38.58 Aligned_cols=59 Identities=15% Similarity=0.277 Sum_probs=38.8
Q ss_pred ecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEe-eecCCcceeeeee
Q psy5692 21 LGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRL-SITGNLSVKKMKV 88 (98)
Q Consensus 21 rGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~-~~~~n~~~~~~~~ 88 (98)
.|+++.|.|.+-..- .-..+|.+++..|.+ .+++|. +++|.|.|+++. .+|. -.-.|..
T Consensus 18 ~~~~v~l~C~a~G~P---~P~i~W~k~~~~i~~---~~~~~~-~~~g~L~I~~~~~~~D~--G~Y~C~A 77 (93)
T cd05849 18 TEGKVSVNCRARANP---FPIYKWRKNNLDIDL---TNDRYS-MVGGNLVINNPDKYKDA--GRYVCIV 77 (93)
T ss_pred cCCeEEEeCcCccCC---CCEEEEEECCEEccC---CCCeEE-EECCEEEECcCCcCCCC--EEEEEEE
Confidence 367899999974332 226899999866633 245774 578999999874 3443 3344543
No 60
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=96.22 E-value=0.0031 Score=37.09 Aligned_cols=52 Identities=12% Similarity=0.183 Sum_probs=33.4
Q ss_pred cCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCcc-----EEEEeEeeecC
Q psy5692 22 GNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGD-----LYVQIRLSITG 79 (98)
Q Consensus 22 GNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGe-----L~Ir~v~~~~~ 79 (98)
|.++.|.|.+ .-...-.-.+|.+++....+ .......+++. |+|++++.+|+
T Consensus 1 G~~v~L~C~~--~~~~~~~~~~W~~~~~~~~~----~~~~~~~~~~~~~~~~L~i~~v~~~d~ 57 (64)
T PF00047_consen 1 GSSVTLTCSV--SSGPPPTTVTWSKNGQSLPE----GSTTNRSTNSVSSTSRLTISNVTPEDS 57 (64)
T ss_dssp TSEEEEEEEE--EESSSTSEEEEEETTTTTSE----EEEEEEEETTTEEEEEEEESSCTGGGT
T ss_pred CCeEEEEeec--CCCCCCcEEEEEECCccccC----cceeEeecccceeeeEEEEccCCHHHC
Confidence 8899999998 11234446789999833211 12333334333 99999998875
No 61
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=96.21 E-value=0.014 Score=37.56 Aligned_cols=66 Identities=18% Similarity=0.297 Sum_probs=41.3
Q ss_pred cCeEEEEccCCCCccceeEEeEEccCC--ee--eecCc---------CCCceEEEcc------CccEEEEeEeeecCCcc
Q psy5692 22 GNTAVLRCQIPSYMSEYIIVTSWIQDD--VN--IYLNT---------DTGGKYVVLS------SGDLYVQIRLSITGNLS 82 (98)
Q Consensus 22 GNtAVLkC~IPs~V~d~V~V~SW~~Dd--~~--I~p~~---------~~dgKY~vlp------sGeL~Ir~v~~~~~n~~ 82 (98)
|.+|+|.|.+++....-..-.+|.+.+ .. +|... +..||..+.. +..|.|++++..|..
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G-- 78 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEG-- 78 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCE--
Confidence 788999999854433334457798876 22 22211 1236887642 246999999999873
Q ss_pred eeeeeeh
Q psy5692 83 VKKMKVE 89 (98)
Q Consensus 83 ~~~~~~~ 89 (98)
.=.|.+.
T Consensus 79 ~Y~C~v~ 85 (100)
T cd05713 79 LYTCFFQ 85 (100)
T ss_pred EEEEEEe
Confidence 4555554
No 62
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=96.18 E-value=0.008 Score=36.84 Aligned_cols=58 Identities=14% Similarity=0.243 Sum_probs=41.4
Q ss_pred EEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCcc-EEEEeEeeecCCcceeeeeeh
Q psy5692 25 AVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGD-LYVQIRLSITGNLSVKKMKVE 89 (98)
Q Consensus 25 AVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGe-L~Ir~v~~~~~n~~~~~~~~~ 89 (98)
|.|.|.+...-.- ...|.+++..|.+. ..+++.+.++|. |.|++++.+|. ..-.|..+
T Consensus 1 ~~L~C~v~g~P~p---~v~W~k~~~~l~~~--~~~~~~~~~~~~~l~I~~~~~~D~--G~Y~C~a~ 59 (76)
T cd05736 1 ASLRCHAEGIPLP---RLTWLKNGMDITPK--LSKQLTLIANGSELHISNVRYEDT--GAYTCIAK 59 (76)
T ss_pred CEeEeEeeecCCC---EEEEEECCEECCCC--CCccEEEeCCCCEEEECcCCcccC--EEEEEEEE
Confidence 6899998654332 46999998777553 346888888874 99999987765 35666554
No 63
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=96.08 E-value=0.013 Score=38.10 Aligned_cols=61 Identities=13% Similarity=0.232 Sum_probs=40.3
Q ss_pred ecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEe-eecCCcceeeeeeh
Q psy5692 21 LGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRL-SITGNLSVKKMKVE 89 (98)
Q Consensus 21 rGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~-~~~~n~~~~~~~~~ 89 (98)
.|+++.|.|.+-..-.- ..+|++++..|.+. .+.+|. .++|.|.|+++. .+|. ..-.|...
T Consensus 18 ~g~~v~l~C~~~G~P~P---~i~W~k~g~~l~~~--~~~~~~-~~~g~L~i~~~~~~~D~--G~Y~C~A~ 79 (94)
T cd05848 18 DEKKVILNCEARGNPVP---TYRWLRNGTEIDTE--SDYRYS-LIDGNLIISNPSEVKDS--GRYQCLAT 79 (94)
T ss_pred CCCEEEEEEEeeecCCC---EEEEEECCeECccC--CCceEE-eeCCeEEEccCCccCcC--EEEEEEEE
Confidence 58999999998544322 57799998766432 234554 468999999974 3443 34566543
No 64
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=96.06 E-value=0.011 Score=38.15 Aligned_cols=52 Identities=21% Similarity=0.358 Sum_probs=34.8
Q ss_pred cCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEcc--Ccc-----EEEEeEeeecC
Q psy5692 22 GNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLS--SGD-----LYVQIRLSITG 79 (98)
Q Consensus 22 GNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlp--sGe-----L~Ir~v~~~~~ 79 (98)
|-++.|.|.+-.. ---...|.+++..|.+ ..+||.+.. .|. |.|.++..+|.
T Consensus 1 g~~~~l~C~~~g~---p~~~i~W~k~~~~i~~---~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~ 59 (88)
T cd05735 1 GQKKEMSCTAHGE---KPIIVRWEKEDRIINP---EMSRYLVSTKEVGDEVISTLQILPTVREDS 59 (88)
T ss_pred CCeEEEEEEEECC---CCCEEEEeeCCEECCC---CCCcEEEEEecCCCcEEEEEEECCCCcccC
Confidence 6789999997533 2237899999976654 246898763 444 66666555553
No 65
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=96.03 E-value=0.0073 Score=38.40 Aligned_cols=49 Identities=14% Similarity=0.263 Sum_probs=35.0
Q ss_pred EEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccC--c--cEEEEeEeeecC
Q psy5692 25 AVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSS--G--DLYVQIRLSITG 79 (98)
Q Consensus 25 AVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlps--G--eL~Ir~v~~~~~ 79 (98)
+.|.|.+-.+-+. ...|.+++..|.+ .++||.+.++ | .|.|++++.+|.
T Consensus 1 v~l~C~v~G~P~P---~i~W~k~~~~i~~---~~~r~~~~~~~~g~~~L~I~~~~~~D~ 53 (75)
T cd05892 1 VKLECQISAIPPP---KIFWKRNNEMVQY---NTDRISLYQDNSGRVTLLIKNVNKKDA 53 (75)
T ss_pred CEEEEEEEecCCC---eEEEEECCEECcC---CCCeEEEEEcCCCcEEEEECCCChhhC
Confidence 4688987433233 5789999977643 2468888764 3 699999999886
No 66
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=96.02 E-value=0.0099 Score=37.93 Aligned_cols=61 Identities=13% Similarity=0.178 Sum_probs=40.0
Q ss_pred eecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEee-ecCCcceeeeee
Q psy5692 20 ILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLS-ITGNLSVKKMKV 88 (98)
Q Consensus 20 irGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~-~~~n~~~~~~~~ 88 (98)
+.|++|.|.|.+-. +-...++|.++...|... .+.+|. +.+|.|.|+++.. +|. -.-.|.+
T Consensus 17 ~~~~~~~l~C~~~g---~p~p~i~W~k~~~~l~~~--~~~~~~-~~~~~L~i~~~~~~~d~--G~Y~C~a 78 (91)
T cd04967 17 SDEGKVSLNCRARG---SPPPTYRWLMNGTEIDDE--PDSRYS-LVGGNLVISNPSKAKDA--GRYQCLA 78 (91)
T ss_pred CCCCEEEEEEeeeE---cCCCEEEEEECCEECCCC--CCCCEE-EECCEEEEecCCccCCC--EEEEEEE
Confidence 46789999999732 223479999998766321 244554 4689999998864 442 3445544
No 67
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=95.92 E-value=0.023 Score=36.04 Aligned_cols=63 Identities=13% Similarity=0.199 Sum_probs=41.3
Q ss_pred eEEEEccCCCCccceeEEeEEccCCe----e--ee-cC------cCCCceEEEcc----CccEEEEeEeeecCCcceeee
Q psy5692 24 TAVLRCQIPSYMSEYIIVTSWIQDDV----N--IY-LN------TDTGGKYVVLS----SGDLYVQIRLSITGNLSVKKM 86 (98)
Q Consensus 24 tAVLkC~IPs~V~d~V~V~SW~~Dd~----~--I~-p~------~~~dgKY~vlp----sGeL~Ir~v~~~~~n~~~~~~ 86 (98)
+|+|.|.+++.-.....-..|.+.+. . ++ +. ....||....+ ++.|.|++++..|+ ..=.|
T Consensus 2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~--G~Y~C 79 (98)
T cd05718 2 SVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDE--GNYIC 79 (98)
T ss_pred CEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccC--EEEEE
Confidence 68999998766544566789999762 1 12 11 12256665553 57899999999887 44555
Q ss_pred ee
Q psy5692 87 KV 88 (98)
Q Consensus 87 ~~ 88 (98)
.+
T Consensus 80 ~v 81 (98)
T cd05718 80 EF 81 (98)
T ss_pred EE
Confidence 44
No 68
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=95.88 E-value=0.011 Score=36.89 Aligned_cols=49 Identities=10% Similarity=0.194 Sum_probs=35.2
Q ss_pred EEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCc----cEEEEeEeeecC
Q psy5692 25 AVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSG----DLYVQIRLSITG 79 (98)
Q Consensus 25 AVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsG----eL~Ir~v~~~~~ 79 (98)
+.|.|.+..+-.. ...|.+|+..|.. ...||.+..++ .|.|++++.+|.
T Consensus 1 v~L~C~v~G~P~P---~v~W~k~~~~i~~---~~~r~~~~~~~~~~~~L~I~~~~~~D~ 53 (75)
T cd05744 1 VRLECRVSAIPPP---QIFWKKNNEMLTY---NTDRISLYQDNCGRICLLIQNANKEDA 53 (75)
T ss_pred CEEEEEEeecCCC---eEEEEECCEECCC---CCCcEEEEEcCCCeEEEEECCCCcccC
Confidence 3688988655554 4679999976643 24588887654 399999998886
No 69
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=95.87 E-value=0.019 Score=36.52 Aligned_cols=66 Identities=20% Similarity=0.173 Sum_probs=44.9
Q ss_pred ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecCCcceeeeeeh
Q psy5692 18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITGNLSVKKMKVE 89 (98)
Q Consensus 18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~n~~~~~~~~~ 89 (98)
.+..|.+|.|.|.+-.+ -.-..+|..++..+..+ .........+++.|.|.++..+| ...-.|..+
T Consensus 11 ~v~~G~~v~l~C~~~G~---P~p~v~W~~~g~~~~~~-~~~~~~~~~~~~~L~I~~v~~~D--~g~Y~C~A~ 76 (90)
T cd04972 11 VVYEGGTATIRCTAEGS---PLPKVEWIIAGLIVIQT-RTDTLETTVDIYNLQLSNITSET--QTTVTCTAE 76 (90)
T ss_pred EEcCCCcEEEEEEEEEc---CCCeEEEEECCEEccCC-ccEEEEecCCEEEEEEecCCccc--CEEEEEEEE
Confidence 35689999999998643 34578999999655321 11112223467799999999988 566777654
No 70
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=95.86 E-value=0.021 Score=36.86 Aligned_cols=59 Identities=17% Similarity=0.187 Sum_probs=40.4
Q ss_pred ceee-cCeEEEEccCCCCccceeEEeEEccCCeeeecC-cCCCceEEEcc---CccEEEEeEeeecC
Q psy5692 18 NVIL-GNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLN-TDTGGKYVVLS---SGDLYVQIRLSITG 79 (98)
Q Consensus 18 ~Vir-GNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~-~~~dgKY~vlp---sGeL~Ir~v~~~~~ 79 (98)
.+.+ |.++.|.|.+...-. -..+|..++..|.+. ....|+|.+.. .+.|.|++++.+|.
T Consensus 12 ~~~~~g~~v~l~C~~~G~P~---P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~ 75 (97)
T cd05869 12 TAMELEEQITLTCEASGDPI---PSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDA 75 (97)
T ss_pred eEEEcCCCEEEEEEeeEeCC---CEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcC
Confidence 4455 699999999754322 257899987655332 22467887754 36899999987764
No 71
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=95.78 E-value=0.018 Score=36.93 Aligned_cols=60 Identities=20% Similarity=0.273 Sum_probs=38.5
Q ss_pred eEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEE---c-cCccEEEEeEeeecCCcceeeee
Q psy5692 24 TAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVV---L-SSGDLYVQIRLSITGNLSVKKMK 87 (98)
Q Consensus 24 tAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~v---l-psGeL~Ir~v~~~~~n~~~~~~~ 87 (98)
++.|.|.+...-.--+. +.|.+|+..|-. ...+++|.. . -.|.|.|.+++..|. ..-+|.
T Consensus 2 ~~~L~C~a~g~P~p~~~-v~W~~~g~~i~~-~~~~~~~~~~~~~~~~~~L~I~~v~~~D~--G~YtC~ 65 (85)
T cd05854 2 NLTLQCHASHDPTMDLT-FTWSLDDFPIDL-DKPNGHYRRMEVKETIGDLVIVNAQLSHA--GTYTCT 65 (85)
T ss_pred cEEEEEEEecCCCCCeE-EEEEECCeEccc-cCCCCcEEEEEecceEeEEEEccCChhhC--eEEEEE
Confidence 58899997544333233 579999976632 223566633 2 368999999999875 344443
No 72
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=95.72 E-value=0.017 Score=37.43 Aligned_cols=62 Identities=24% Similarity=0.383 Sum_probs=40.9
Q ss_pred ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEE-ccCc---cEEEEeEeeecCCcceeeeee
Q psy5692 18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVV-LSSG---DLYVQIRLSITGNLSVKKMKV 88 (98)
Q Consensus 18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~v-lpsG---eL~Ir~v~~~~~n~~~~~~~~ 88 (98)
.+..|.+|.|.|.+..+-.- -..|++++..+.+ +++|.+ ..+| .|.|.+++.+|.. .-.|..
T Consensus 12 ~v~eG~~v~L~C~v~g~P~p---~i~W~k~~~~~~~----~~~~~~~~~~~~~~~L~I~~~~~~D~G--~Y~C~a 77 (92)
T cd05891 12 TIMEGKTLNLTCTVFGNPDP---EVIWFKNDQDIEL----SEHYSVKLEQGKYASLTIKGVTSEDSG--KYSINV 77 (92)
T ss_pred EEcCCCEEEEEEEEEEeCCC---eEEEEECCEECCC----CCCEEEEEcCCCEEEEEECCCChhhCE--EEEEEE
Confidence 45789999999987433222 2699999865533 455654 3343 6999999887753 445544
No 73
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=95.63 E-value=0.023 Score=37.01 Aligned_cols=67 Identities=12% Similarity=0.099 Sum_probs=42.8
Q ss_pred ecCeEEEEccCCCCc---cceeEEeEEccCC------eeee-cC-------cCCCceEEEcc----CccEEEEeEeeecC
Q psy5692 21 LGNTAVLRCQIPSYM---SEYIIVTSWIQDD------VNIY-LN-------TDTGGKYVVLS----SGDLYVQIRLSITG 79 (98)
Q Consensus 21 rGNtAVLkC~IPs~V---~d~V~V~SW~~Dd------~~I~-p~-------~~~dgKY~vlp----sGeL~Ir~v~~~~~ 79 (98)
+|.+|+|.|.+++.. .....-..|.+.+ ..++ .. .+..||+.+.+ +..|.|++++.+|.
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds 80 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY 80 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence 699999999875442 1344557788753 1111 11 12457888854 34799999999884
Q ss_pred Ccceeeeeeh
Q psy5692 80 NLSVKKMKVE 89 (98)
Q Consensus 80 n~~~~~~~~~ 89 (98)
..=.|.+-
T Consensus 81 --G~Y~C~v~ 88 (106)
T cd05877 81 --GRYRCEVI 88 (106)
T ss_pred --EEEEEEEE
Confidence 66666654
No 74
>KOG3513|consensus
Probab=95.60 E-value=0.019 Score=53.26 Aligned_cols=56 Identities=18% Similarity=0.317 Sum_probs=45.0
Q ss_pred ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecCC
Q psy5692 18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITGN 80 (98)
Q Consensus 18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~n 80 (98)
+|..|.+++|.|..-. -=..+.+|..++. +.. .+|||.++++|.|-|+|++..|+-
T Consensus 437 ~a~~g~~v~i~C~~~a---sP~p~~~W~k~~~-~~~---~~~r~~i~edGtL~I~n~t~~DaG 492 (1051)
T KOG3513|consen 437 MAVVGGTVTIDCKPFA---SPKPKVSWLKGGE-KLL---QSGRIRILEDGTLEISNVTRSDAG 492 (1051)
T ss_pred EEEeCCeEEEeeccCC---CCcceEEEEcCCc-ccc---cCceEEECCCCcEEecccCcccCc
Confidence 5779999999999421 2245789999997 333 489999999999999999998863
No 75
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=95.50 E-value=0.014 Score=36.91 Aligned_cols=48 Identities=10% Similarity=0.180 Sum_probs=35.0
Q ss_pred EEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCc----cEEEEeEeeecC
Q psy5692 26 VLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSG----DLYVQIRLSITG 79 (98)
Q Consensus 26 VLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsG----eL~Ir~v~~~~~ 79 (98)
.|.|.+.-+-.. ...|.+|+..|.+ ..+||.+...+ .|.|.+++.+|.
T Consensus 2 ~l~C~v~G~P~P---~v~W~k~~~~l~~---~~~~~~~~~~~~~~~~L~I~~v~~~D~ 53 (75)
T cd05893 2 RLECRVSGVPHP---QIFWKKENESLTH---NTDRVSMHQDNCGYICLLIQGATKEDA 53 (75)
T ss_pred EEEEEEeEecCC---EEEEEECCEECCC---CCCeEEEEEcCCCEEEEEECCCCHHHC
Confidence 688887544444 5679999976643 35788887654 599999998886
No 76
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=95.45 E-value=0.025 Score=35.31 Aligned_cols=49 Identities=22% Similarity=0.301 Sum_probs=34.3
Q ss_pred EEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEcc-CccEEEEeEeeecC
Q psy5692 25 AVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLS-SGDLYVQIRLSITG 79 (98)
Q Consensus 25 AVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlp-sGeL~Ir~v~~~~~ 79 (98)
++|.|.+..+-. -..+|++++..|.+ ..++|.+.. .|.|.|.+++.+|.
T Consensus 1 v~L~C~~~g~P~---p~v~W~k~g~~l~~---~~~~~~~~~~~~~L~I~~~~~~D~ 50 (77)
T cd05760 1 VTLRCHIDGHPR---PTYQWFRDGTPLSD---GQGNYSVSSKERTLTLRSAGPDDS 50 (77)
T ss_pred CEEEEEeeecCC---CcEEEEECCEECCC---CCccEEEeCCCCEEEEeeCCcccC
Confidence 479998754432 35799999876644 245676654 46899999998774
No 77
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=95.40 E-value=0.016 Score=35.13 Aligned_cols=60 Identities=12% Similarity=0.109 Sum_probs=37.5
Q ss_pred ecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecCCcceeeeee
Q psy5692 21 LGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITGNLSVKKMKV 88 (98)
Q Consensus 21 rGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~n~~~~~~~~ 88 (98)
.|.++.|.|.+..+-.. ..+|.+++..+.+. .........+.|.|.+++.+|. ..-.|..
T Consensus 8 ~G~~v~L~C~~~g~p~p---~i~W~k~~~~~~~~---~~~~~~~~~~~L~i~~v~~~D~--G~Y~C~a 67 (82)
T cd05856 8 VGSSVRLKCVASGNPRP---DITWLKDNKPLTPT---EIGESRKKKWTLSLKNLKPEDS--GKYTCHV 67 (82)
T ss_pred CCCeEEEEEEeeEeCCC---cEEEEECCcCCcCC---ccceecCceEEEEEccCChhhC--EEEEEEE
Confidence 69999999997544332 36799998655442 1112222346788888887774 3455544
No 78
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=95.38 E-value=0.034 Score=35.35 Aligned_cols=67 Identities=15% Similarity=0.214 Sum_probs=42.5
Q ss_pred eeecCeEEEEccCCCCccceeEEeEEccCC-----eeeec-C-------cCCCceEEEccCc-----cEEEEeEeeecCC
Q psy5692 19 VILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNIYL-N-------TDTGGKYVVLSSG-----DLYVQIRLSITGN 80 (98)
Q Consensus 19 VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-----~~I~p-~-------~~~dgKY~vlpsG-----eL~Ir~v~~~~~n 80 (98)
|..|.+|.|.|.+++.... ....|.+.. ..|.. . ....+|+.+..++ -|.|++++.+|.
T Consensus 3 v~~G~~v~L~C~~~~~~~~--~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~- 79 (105)
T cd00099 3 VSEGESVTLSCTYSGSFSS--YYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDS- 79 (105)
T ss_pred ecCCCCEEEEEEEeCCcCc--ceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHC-
Confidence 5689999999998765223 244676642 22221 1 1245788876543 788999998875
Q ss_pred cceeeeeeh
Q psy5692 81 LSVKKMKVE 89 (98)
Q Consensus 81 ~~~~~~~~~ 89 (98)
..=.|.+.
T Consensus 80 -G~Y~C~v~ 87 (105)
T cd00099 80 -AVYYCAVS 87 (105)
T ss_pred -EEEEEEEe
Confidence 55556554
No 79
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=95.29 E-value=0.039 Score=36.53 Aligned_cols=65 Identities=14% Similarity=0.200 Sum_probs=43.1
Q ss_pred ceeecCeEEEEccCCCCccceeEEeEEcc-CCeeeecCcCCCceEEEccC----ccEEEEeEeeecCCcceeeeeeh
Q psy5692 18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQ-DDVNIYLNTDTGGKYVVLSS----GDLYVQIRLSITGNLSVKKMKVE 89 (98)
Q Consensus 18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~-Dd~~I~p~~~~dgKY~vlps----GeL~Ir~v~~~~~n~~~~~~~~~ 89 (98)
.+..|.+|.|.|.+...-. .-...|.. ++..+.+ .+.||.+..+ +.|.|++++.+|. ..-+|...
T Consensus 11 ~v~~G~~v~l~C~v~G~P~--~p~i~W~~~~g~~l~~---~~~r~~v~~~~~~~~~L~I~~v~~~D~--G~YtC~A~ 80 (96)
T cd05865 11 EISVGESKFFLCQVAGEAK--DKDISWFSPNGEKLTP---NQQRISVVRNDDYSSTLTIYNANIDDA--GIYKCVVS 80 (96)
T ss_pred EECCCCeEEEEEEEeCCCC--CCEEEEECCCCcCccc---cCCeEEEEeCCCCceEEEEeccChhhC--EEEEEEEE
Confidence 5678999999998743221 23667997 5555433 2457776533 6799999999884 44555543
No 80
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=95.22 E-value=0.03 Score=34.38 Aligned_cols=60 Identities=20% Similarity=0.245 Sum_probs=36.8
Q ss_pred EEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEcc---CccEEEEeEeeecCCcceeeeee
Q psy5692 25 AVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLS---SGDLYVQIRLSITGNLSVKKMKV 88 (98)
Q Consensus 25 AVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlp---sGeL~Ir~v~~~~~n~~~~~~~~ 88 (98)
.+|+|.+++--. .....|++++..|.+....+.+|.+.. .+.|.|.+++.+|. ..=.|.+
T Consensus 1 ~~L~C~a~~~~p--~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds--G~Y~C~a 63 (76)
T cd05895 1 LVLRCETVSEYP--SLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADN--GEYKCMV 63 (76)
T ss_pred CEEEEecccCCC--CCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccC--EEEEEEE
Confidence 379998642211 124679999876644333445665543 47799999987664 4455544
No 81
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=95.06 E-value=0.015 Score=36.49 Aligned_cols=67 Identities=16% Similarity=0.234 Sum_probs=44.0
Q ss_pred ceeecCeEEEEccCCCCccceeEEeEEccCC-----eeee----------cCcCCCceEEEccCcc-----EEEEeEeee
Q psy5692 18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNIY----------LNTDTGGKYVVLSSGD-----LYVQIRLSI 77 (98)
Q Consensus 18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-----~~I~----------p~~~~dgKY~vlpsGe-----L~Ir~v~~~ 77 (98)
.+..|.+|.|.|.++ . -+......|.+.+ ..|+ +.....+|+.+..++. |.|+|++..
T Consensus 12 ~~~~G~~v~L~C~~~-~-~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l~~~ 89 (114)
T PF07686_consen 12 TVQEGESVTLPCSYS-S-SSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNLQPS 89 (114)
T ss_dssp EEETTSEEEEEEEEE-S-SSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSESGG
T ss_pred EEecCCCEEEEEEEe-C-CCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCCCcC
Confidence 455899999999988 3 3455566777632 2332 1123467888887777 999999887
Q ss_pred cCCcceeeeee
Q psy5692 78 TGNLSVKKMKV 88 (98)
Q Consensus 78 ~~n~~~~~~~~ 88 (98)
|. ..=.|.+
T Consensus 90 Ds--G~Y~C~v 98 (114)
T PF07686_consen 90 DS--GTYFCQV 98 (114)
T ss_dssp GE--EEEEEEE
T ss_pred cC--EEEEEEE
Confidence 74 3444444
No 82
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=94.91 E-value=0.065 Score=31.68 Aligned_cols=37 Identities=16% Similarity=0.323 Sum_probs=26.8
Q ss_pred EeeeeceeecCeEEEEccCCCCccceeEEeEEccCCeeeec
Q psy5692 13 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYL 53 (98)
Q Consensus 13 V~d~~~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p 53 (98)
.+.. .+..|-++.|.|.+++.-. . ...|.+++..+.+
T Consensus 6 ~~~~-~v~~g~~~~l~C~~~~~p~--~-~~~w~~~~~~~~~ 42 (80)
T PF13895_consen 6 SSPQ-SVEEGDSVTLTCSVSGNPP--P-QVQWYKNGSPINS 42 (80)
T ss_dssp EESS-EEETTSEEEEEEEEESSSS--S-EEEEEETTEEEEE
T ss_pred ccce-EEeCCCcEEEEEEEEcccc--e-eeeeeeeeeeeee
Confidence 3445 7789999999999884433 2 3789998866643
No 83
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=94.88 E-value=0.071 Score=32.20 Aligned_cols=66 Identities=20% Similarity=0.237 Sum_probs=38.6
Q ss_pred ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEE-ccCccEEEEeEeeecCCcceeeeeeh
Q psy5692 18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVV-LSSGDLYVQIRLSITGNLSVKKMKVE 89 (98)
Q Consensus 18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~v-lpsGeL~Ir~v~~~~~n~~~~~~~~~ 89 (98)
.+-.|.++.|.|.+-.+-. ....|.+++..+.+... -..+.. .+...|.|.++..+|.- .-.|.+.
T Consensus 5 ~~~~G~~~~l~C~~~~~p~---~~v~W~k~~~~~~~~~~-~~~~~~~~~~~~l~i~~~~~~d~g--~Y~C~~~ 71 (85)
T cd05729 5 AVPAGSTVRLKCPASGNPR---PTITWLKDGKPFKKEHR-IGGYKVRKKKWTLILESVVPSDSG--KYTCIVE 71 (85)
T ss_pred EecCCCcEEEEEEcCCCCC---CeEEEEECCEECcccCc-eeEEEccCcEEEEEEeECCcccCE--EEEEEEE
Confidence 3457999999999765532 24699999865543110 011111 23346888887766543 3455543
No 84
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=94.68 E-value=0.11 Score=35.96 Aligned_cols=70 Identities=13% Similarity=0.106 Sum_probs=41.7
Q ss_pred eceeecCeEEEEccCCCCccc-eeEEeEEccCC------eeee-cC---------cCCCceEEEc-----cCccEEEEeE
Q psy5692 17 HNVILGNTAVLRCQIPSYMSE-YIIVTSWIQDD------VNIY-LN---------TDTGGKYVVL-----SSGDLYVQIR 74 (98)
Q Consensus 17 ~~VirGNtAVLkC~IPs~V~d-~V~V~SW~~Dd------~~I~-p~---------~~~dgKY~vl-----psGeL~Ir~v 74 (98)
-.+..|-+|.|.|...+...+ -..-..|.+.+ ..|+ +. ....||.... -++.|.|+|+
T Consensus 8 v~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I~nv 87 (116)
T cd05879 8 VYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVIHNL 87 (116)
T ss_pred EEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEEccC
Confidence 367799999999999765422 23567894421 1122 11 1122566543 2455999999
Q ss_pred eeecCCcceeeeee
Q psy5692 75 LSITGNLSVKKMKV 88 (98)
Q Consensus 75 ~~~~~n~~~~~~~~ 88 (98)
+..|. ..-.|++
T Consensus 88 ~~sD~--G~Y~C~v 99 (116)
T cd05879 88 DYTDN--GTFTCDV 99 (116)
T ss_pred CcccC--EEEEEEE
Confidence 98886 4445554
No 85
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=94.49 E-value=0.099 Score=33.45 Aligned_cols=53 Identities=17% Similarity=0.166 Sum_probs=32.0
Q ss_pred cCeEEEEccCCCCccceeEEeEEccCC----eeeecCcCCCceEEEcc----------CccEEEEeEeeecC
Q psy5692 22 GNTAVLRCQIPSYMSEYIIVTSWIQDD----VNIYLNTDTGGKYVVLS----------SGDLYVQIRLSITG 79 (98)
Q Consensus 22 GNtAVLkC~IPs~V~d~V~V~SW~~Dd----~~I~p~~~~dgKY~vlp----------sGeL~Ir~v~~~~~ 79 (98)
|.+|.|.|.+-+.-.. -.+|++++ ..+.|. ......+++ .+-|+|.+|+.+|+
T Consensus 1 G~~v~l~C~v~g~P~P---~i~W~k~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~ 67 (90)
T cd04974 1 GSDVEFHCKVYSDAQP---HIQWLKHVEVNGSKYGPD--GLPYVTVLKVAGINTTDNESEVLYLRNVSFDDA 67 (90)
T ss_pred CCcEEEEEEEeCCCCC---eEEEEEecccCCceeCCC--CCceEEEEEecCCcccccccceEEEeccccccC
Confidence 7899999998655433 37899873 223221 111122222 35689999988775
No 86
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=94.39 E-value=0.053 Score=36.36 Aligned_cols=56 Identities=18% Similarity=0.148 Sum_probs=39.6
Q ss_pred ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccC--------ccEEEEeEeeecC
Q psy5692 18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSS--------GDLYVQIRLSITG 79 (98)
Q Consensus 18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlps--------GeL~Ir~v~~~~~ 79 (98)
.|..|.++.|.|.+-.|-. .-...|.+|+..|-. ++++.+.+. +.|.|+.+..+|.
T Consensus 14 ~v~~G~~v~L~c~v~g~~P--~p~v~W~Kdg~~i~~----~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~ 77 (101)
T cd04975 14 FVNLGENLNLVVEVEAYPP--PPHINWTYDNRTLTN----KLTEIVTSENESEYRYVSELKLVRLKESEA 77 (101)
T ss_pred EEECCCCEEEEEEEEecCC--CCccEEEeCCeeCCC----CcceeEEEeccCcceEEEEEEEeecCHhhC
Confidence 4558999999999765221 236789999977632 455555543 6799999988875
No 87
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=94.25 E-value=0.19 Score=32.49 Aligned_cols=56 Identities=13% Similarity=0.127 Sum_probs=34.7
Q ss_pred cCeEEEEccCCCCccceeEEeEEccCC----eee---ecC------cCCCceEEEc-c---CccEEEEeEeeecC
Q psy5692 22 GNTAVLRCQIPSYMSEYIIVTSWIQDD----VNI---YLN------TDTGGKYVVL-S---SGDLYVQIRLSITG 79 (98)
Q Consensus 22 GNtAVLkC~IPs~V~d~V~V~SW~~Dd----~~I---~p~------~~~dgKY~vl-p---sGeL~Ir~v~~~~~ 79 (98)
|.+|+|.|..++- . -+...+|.+.+ ..| ++. .+..+|..+. | +..|.|+|++.+|.
T Consensus 1 G~~vtL~C~~~~~-~-~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~ 73 (97)
T cd05846 1 GGNVTLSCNLTLP-E-EVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDE 73 (97)
T ss_pred CCcEEEEEEeCCC-C-eeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeee
Confidence 7899999986543 2 35678898753 122 121 1224455552 3 45599999999885
No 88
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=94.24 E-value=0.17 Score=33.80 Aligned_cols=71 Identities=14% Similarity=0.248 Sum_probs=41.5
Q ss_pred ceeecCeEEEEccCCCCcc-ceeEEeEEccCC------eee--ecCcC----CCceE----EEc--c---CccEEEEeEe
Q psy5692 18 NVILGNTAVLRCQIPSYMS-EYIIVTSWIQDD------VNI--YLNTD----TGGKY----VVL--S---SGDLYVQIRL 75 (98)
Q Consensus 18 ~VirGNtAVLkC~IPs~V~-d~V~V~SW~~Dd------~~I--~p~~~----~dgKY----~vl--p---sGeL~Ir~v~ 75 (98)
.|..|.+|.|.|.+++.-. .-.....|.+.. ..+ |.... ..++| ... + +..|.|.+++
T Consensus 9 ~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~ 88 (116)
T cd05715 9 YAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVIHNLQ 88 (116)
T ss_pred EEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEEeeCC
Confidence 5678999999998854321 112357886432 122 21111 23344 332 2 2459999999
Q ss_pred eecCCcceeeeeehH
Q psy5692 76 SITGNLSVKKMKVEE 90 (98)
Q Consensus 76 ~~~~n~~~~~~~~~~ 90 (98)
.+|. .+=.|.+..
T Consensus 89 ~~D~--G~Y~C~v~~ 101 (116)
T cd05715 89 FTDN--GTYTCDVKN 101 (116)
T ss_pred cccC--EEEEEEEEe
Confidence 9986 666776653
No 89
>PHA02785 IL-beta-binding protein; Provisional
Probab=94.15 E-value=0.069 Score=42.26 Aligned_cols=67 Identities=12% Similarity=0.176 Sum_probs=45.2
Q ss_pred eecCeEEEEccCCCCccceeEEeEEccCCeeeecC-cCCCceEEEcc-----------CccEEEEeEeeecCCcceeeee
Q psy5692 20 ILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLN-TDTGGKYVVLS-----------SGDLYVQIRLSITGNLSVKKMK 87 (98)
Q Consensus 20 irGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~-~~~dgKY~vlp-----------sGeL~Ir~v~~~~~n~~~~~~~ 87 (98)
..|.++.|.|....+-...-....|..|+..|-.. ...+|++.+.. +|.|.|.+|+.+|. ..-.|.
T Consensus 233 ~~G~~v~L~C~a~g~P~~~~~~v~W~kng~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~--G~Y~C~ 310 (326)
T PHA02785 233 SIGSNLTIACRVSLRPPTTDADVFWISNGMYYEEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDA--TTFTCM 310 (326)
T ss_pred cCCCcEEEEEEEECCCCCCCceEEEEECCEECCCcCCCCceeEEEecCccccccceeeeEEEEECCcchhcC--eeeEEE
Confidence 46999999999854433332467999998766322 12356665533 57899999999885 555664
Q ss_pred e
Q psy5692 88 V 88 (98)
Q Consensus 88 ~ 88 (98)
.
T Consensus 311 A 311 (326)
T PHA02785 311 A 311 (326)
T ss_pred E
Confidence 4
No 90
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=94.12 E-value=0.15 Score=34.27 Aligned_cols=59 Identities=14% Similarity=0.164 Sum_probs=36.9
Q ss_pred ecCeEEEEccCCCCccc-------eeEEeEEccCC----eeee--c------CcCCCceEEEcc------CccEEEEeEe
Q psy5692 21 LGNTAVLRCQIPSYMSE-------YIIVTSWIQDD----VNIY--L------NTDTGGKYVVLS------SGDLYVQIRL 75 (98)
Q Consensus 21 rGNtAVLkC~IPs~V~d-------~V~V~SW~~Dd----~~I~--p------~~~~dgKY~vlp------sGeL~Ir~v~ 75 (98)
.|.+|+|.|.++....+ ......|.+.+ ..++ - .....||+.+.+ +..|.|+|++
T Consensus 1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~ 80 (110)
T cd05878 1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR 80 (110)
T ss_pred CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence 48899999999654432 23455677642 2222 1 123457888742 3459999999
Q ss_pred eecC
Q psy5692 76 SITG 79 (98)
Q Consensus 76 ~~~~ 79 (98)
..|.
T Consensus 81 ~sD~ 84 (110)
T cd05878 81 SSDS 84 (110)
T ss_pred hhhC
Confidence 8884
No 91
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=93.90 E-value=0.068 Score=32.71 Aligned_cols=54 Identities=13% Similarity=0.077 Sum_probs=35.5
Q ss_pred EEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecCCcceeeeee
Q psy5692 26 VLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITGNLSVKKMKV 88 (98)
Q Consensus 26 VLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~n~~~~~~~~ 88 (98)
+|.|.+-.+-.. ..+|.+++..+.+ +......+.|.|.|++++.+|. ..-.|..
T Consensus 2 ~L~C~~~G~P~P---~v~W~k~~~~~~~----~~~~~~~~~~~L~I~~v~~~D~--G~Y~C~a 55 (71)
T cd05876 2 VLECIAEGLPTP---EVHWDRIDGPLSP----NRTKKLNNNKTLQLDNVLESDD--GEYVCTA 55 (71)
T ss_pred EEEEEeeEecCC---eEEEEECCcCCCC----CceeEEcCCCEEEEcccCHHhC--EEEEEEE
Confidence 688987544333 6799999865533 2223346789999999998774 2455544
No 92
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=93.83 E-value=0.18 Score=32.48 Aligned_cols=67 Identities=18% Similarity=0.309 Sum_probs=41.1
Q ss_pred ceeecCeEEEEccCCCCccceeEEeEEccCC------eeeecCc----CCCceEEEcc-----CccEEEEeEeeecCCcc
Q psy5692 18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD------VNIYLNT----DTGGKYVVLS-----SGDLYVQIRLSITGNLS 82 (98)
Q Consensus 18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd------~~I~p~~----~~dgKY~vlp-----sGeL~Ir~v~~~~~n~~ 82 (98)
.|..|.+|.|.|.++.. ... ...|.+.. ..++... ...+||.+.. +-.|.|++++.+|. .
T Consensus 9 ~~~~G~~v~L~C~~~~~-~~~--~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Ds--G 83 (109)
T cd04983 9 SVQEGENVTLNCNYSTS-TFY--YLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDS--A 83 (109)
T ss_pred EEcCCCCEEEEEEECCC-Ccc--EEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHC--E
Confidence 45689999999998754 222 34587642 2233211 2468997754 33688888877774 4
Q ss_pred eeeeeeh
Q psy5692 83 VKKMKVE 89 (98)
Q Consensus 83 ~~~~~~~ 89 (98)
.=.|.+.
T Consensus 84 ~Y~C~~~ 90 (109)
T cd04983 84 VYFCALS 90 (109)
T ss_pred EEEEEEe
Confidence 4555543
No 93
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=93.82 E-value=0.13 Score=33.00 Aligned_cols=67 Identities=13% Similarity=0.174 Sum_probs=41.5
Q ss_pred eeecCeEEEEccCCCCccceeEEeEEccCC-----eeee----cCcCCCceEEEcc---Cc--cEEEEeEeeecCCccee
Q psy5692 19 VILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNIY----LNTDTGGKYVVLS---SG--DLYVQIRLSITGNLSVK 84 (98)
Q Consensus 19 VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-----~~I~----p~~~~dgKY~vlp---sG--eL~Ir~v~~~~~n~~~~ 84 (98)
|-.|.++.|.|.++..-.+ ....|.+-+ ..|. ......||+.+.. +| -|.|++++.+|. +.=
T Consensus 4 ~~~G~~vtl~C~~~~~~~~--~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~Ds--G~Y 79 (98)
T cd05716 4 GELGGSVTIPCPYPPKNRS--YEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDA--GWY 79 (98)
T ss_pred EEeCCeEEEEeeCCCCCCC--cEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHC--EEE
Confidence 5689999999997654222 344788775 1121 1123468888753 23 488889988885 444
Q ss_pred eeeeh
Q psy5692 85 KMKVE 89 (98)
Q Consensus 85 ~~~~~ 89 (98)
-|.+.
T Consensus 80 ~C~~~ 84 (98)
T cd05716 80 WCGVG 84 (98)
T ss_pred EEEcc
Confidence 55443
No 94
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=93.79 E-value=0.25 Score=31.50 Aligned_cols=56 Identities=9% Similarity=0.186 Sum_probs=37.0
Q ss_pred ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecCCcceeeeeeh
Q psy5692 18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITGNLSVKKMKVE 89 (98)
Q Consensus 18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~n~~~~~~~~~ 89 (98)
-+..|.+++|.|...+.-. .....|.+++..|.. .++.|.|+++ .+.+..-.|...
T Consensus 11 ~v~~G~~V~L~C~~~~~p~--~~~~~W~kng~~l~~-----------~~~~l~i~~~---~~dsG~Y~C~a~ 66 (78)
T cd05752 11 TIFQGEKVTLTCNGFNSPE--QNSTQWYHNGKLLET-----------TTNSYRIRAA---NNDSGEYRCQTQ 66 (78)
T ss_pred EeeCCCCEEEEEeCCCCCC--CccEEEEECCEEeec-----------cCCeEEEeec---ccCCEEeEEECC
Confidence 5678999999999876532 122599999866521 2456777777 344455666543
No 95
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=93.74 E-value=0.11 Score=39.79 Aligned_cols=57 Identities=11% Similarity=0.182 Sum_probs=39.9
Q ss_pred eeecCeEEEEccCCCCcc-ce-eEEeEEccCCeeeecCcCCCceEEEccC-ccEEEEeEeeecC
Q psy5692 19 VILGNTAVLRCQIPSYMS-EY-IIVTSWIQDDVNIYLNTDTGGKYVVLSS-GDLYVQIRLSITG 79 (98)
Q Consensus 19 VirGNtAVLkC~IPs~V~-d~-V~V~SW~~Dd~~I~p~~~~dgKY~vlps-GeL~Ir~v~~~~~ 79 (98)
+..|.++.|.|....-.. .+ --..+|.+|...|.+ ++++.+.++ |.|.|.+|+.+|.
T Consensus 141 ~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~----~~r~~~~~~~~~L~I~~V~~~Ds 200 (227)
T PHA02826 141 FNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLY----TDRIQLRNNNSTLVIKSATHDDS 200 (227)
T ss_pred EecCCCEEEEeeCCCCccccCCCceEEEEECCEECCC----CCCEEEeCCCCEEEECcCCHHhC
Confidence 457999999998642110 01 125689999977754 457777665 4799999998875
No 96
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=93.56 E-value=0.11 Score=33.01 Aligned_cols=53 Identities=17% Similarity=0.173 Sum_probs=32.6
Q ss_pred cCeEEEEccCCCCccceeEEeEEccCC----eeeecCcCCCceEEEccC----------ccEEEEeEeeecC
Q psy5692 22 GNTAVLRCQIPSYMSEYIIVTSWIQDD----VNIYLNTDTGGKYVVLSS----------GDLYVQIRLSITG 79 (98)
Q Consensus 22 GNtAVLkC~IPs~V~d~V~V~SW~~Dd----~~I~p~~~~dgKY~vlps----------GeL~Ir~v~~~~~ 79 (98)
|++|.|.|.+.+.-.. ..+|+++. ..+.|. ......+++. +.|.|++++.+|+
T Consensus 1 G~~v~L~C~~~g~P~P---~i~W~k~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~ 67 (90)
T cd05858 1 GSTVEFVCKVYSDAQP---HIQWLKHVEKNGSKYGPD--GLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDA 67 (90)
T ss_pred CCeEEEEEEEecCCCC---EEEEEEecccCCcEeCCC--CCeeEEEeccCCceecCCceeEEEEccCCHHHC
Confidence 7899999998655443 57898853 223221 0112223322 4699999988875
No 97
>smart00406 IGv Immunoglobulin V-Type.
Probab=93.53 E-value=0.14 Score=30.56 Aligned_cols=55 Identities=11% Similarity=0.155 Sum_probs=32.6
Q ss_pred eEEEEccCCCCccceeEEeEEccCC-----eeeecCc---------CCCceEEEccC-----ccEEEEeEeeecC
Q psy5692 24 TAVLRCQIPSYMSEYIIVTSWIQDD-----VNIYLNT---------DTGGKYVVLSS-----GDLYVQIRLSITG 79 (98)
Q Consensus 24 tAVLkC~IPs~V~d~V~V~SW~~Dd-----~~I~p~~---------~~dgKY~vlps-----GeL~Ir~v~~~~~ 79 (98)
+|.|.|.+.+.-.. .....|.+.. ..|.... ...+|+.+... ..|.|++++.+|.
T Consensus 1 ~v~l~C~~~~~~~~-~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~ 74 (81)
T smart00406 1 SVTLSCKASGFTFS-SYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDT 74 (81)
T ss_pred CEEEEEEEeccccc-eeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHC
Confidence 57899997654433 3457787643 2222111 24578877643 3477888887764
No 98
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=93.44 E-value=0.084 Score=33.65 Aligned_cols=47 Identities=13% Similarity=0.163 Sum_probs=33.5
Q ss_pred EEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecC
Q psy5692 26 VLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITG 79 (98)
Q Consensus 26 VLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~ 79 (98)
-|.|.+-.+-.-- .+|.+|+..|.+ ..++|.+. .+.|.|.+++.+|+
T Consensus 2 ~l~c~v~g~P~P~---v~W~kdg~~l~~---~~~~~~~~-~~~L~I~~v~~~D~ 48 (72)
T cd07702 2 RLTPKVKAFPAPE---VIWLKDGLPAAE---KCSRYHVD-GYSLVIKDVTEEDA 48 (72)
T ss_pred eEEeeEEEcCCCe---EEEEECCEECCC---CCcEEEeC-CCEEEECcCCHHHC
Confidence 3778875555433 499999976643 34678764 46899999998886
No 99
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=93.17 E-value=0.16 Score=34.02 Aligned_cols=67 Identities=18% Similarity=0.165 Sum_probs=39.8
Q ss_pred eeecCeEEEEccCCCCccceeEEeEEccCC-eee---------ecCcCCCceEEEc----cCcc--EEEEeEeeecCCcc
Q psy5692 19 VILGNTAVLRCQIPSYMSEYIIVTSWIQDD-VNI---------YLNTDTGGKYVVL----SSGD--LYVQIRLSITGNLS 82 (98)
Q Consensus 19 VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-~~I---------~p~~~~dgKY~vl----psGe--L~Ir~v~~~~~n~~ 82 (98)
+-.|.+|+|.|..+.. -..-.+|..++ ..+ +......+|+.+. .+|. |-|++++.+| ++
T Consensus 4 ~~~G~~VtL~C~~s~~---~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sD--sg 78 (94)
T cd07690 4 GKKGDTAELPCTASQK---KSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIED--SD 78 (94)
T ss_pred eeCCCCEEEEEEeCCC---CCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHH--CE
Confidence 3479999999997743 34556798655 321 1111223333333 2454 9999998887 35
Q ss_pred eeeeeehH
Q psy5692 83 VKKMKVEE 90 (98)
Q Consensus 83 ~~~~~~~~ 90 (98)
.=-|.++.
T Consensus 79 tY~C~v~~ 86 (94)
T cd07690 79 TYICEVED 86 (94)
T ss_pred EEEEEECC
Confidence 55566543
No 100
>KOG4222|consensus
Probab=93.08 E-value=0.13 Score=48.69 Aligned_cols=73 Identities=18% Similarity=0.294 Sum_probs=56.1
Q ss_pred ceeeeceEEEEeeeeceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecCC
Q psy5692 3 PVVKQKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITGN 80 (98)
Q Consensus 3 AVV~Q~Yev~V~d~~~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~n 80 (98)
||++..|.++-.+. .+..|+.|+|-|.=|.--. ....||..|+..+- ...-.++..-..|-|+|.||++.|+-
T Consensus 128 avlrddfrv~prd~-~~a~ge~avlEcgpP~ghp--eptvSw~Kdg~pl~--~~~~~~~~lisgG~LlIsnvrksD~G 200 (1281)
T KOG4222|consen 128 AVLRDDFRVSPRDV-QAAVGEEAVLECGPPRGHP--EPTVSWVKDGKPLD--HYDVPIIALISGGNLLISNVRKSDEG 200 (1281)
T ss_pred EEechhcccCcccc-cccccceeEEeccCCCCCC--CCcceeecCCCccc--cccceeEEEecCCcEEEeccccCCCc
Confidence 67788888888887 8999999999999543333 35789999994432 11235677778999999999999863
No 101
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=93.07 E-value=0.17 Score=31.51 Aligned_cols=60 Identities=15% Similarity=0.223 Sum_probs=37.2
Q ss_pred cCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecCCcceeeeee
Q psy5692 22 GNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITGNLSVKKMKV 88 (98)
Q Consensus 22 GNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~n~~~~~~~~ 88 (98)
|-.+.|.|.+..+- .-..+|.+++..|.+.. .+..+ ....+.|.|.+++..|+ ..-.|..
T Consensus 1 g~~~~l~C~a~G~P---~P~i~W~k~g~~i~~~~-~~~~~-~~~~~~l~i~~v~~~D~--G~Y~C~A 60 (76)
T cd05868 1 GEDGTLICRANGNP---KPSISWLTNGVPIEIAP-TDPSR-KVDGDTIIFSKVQERSS--AVYQCNA 60 (76)
T ss_pred CCCEEEEEEeeEeC---CCeEEEEECCEEccccC-CCceE-EecCCEEEECCCCHhhC--EEEEEEE
Confidence 67899999974332 23589999987764321 12222 23445788888887764 4445543
No 102
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=92.93 E-value=0.34 Score=31.15 Aligned_cols=61 Identities=20% Similarity=0.222 Sum_probs=37.2
Q ss_pred ceeecCeEEEEccCCCCccceeEEeEEccCC-----e-eeecCc----CCCceEEEccCcc---EEEEeEeeecC
Q psy5692 18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----V-NIYLNT----DTGGKYVVLSSGD---LYVQIRLSITG 79 (98)
Q Consensus 18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-----~-~I~p~~----~~dgKY~vlpsGe---L~Ir~v~~~~~ 79 (98)
.|..|.+|.|.|.+.+...++ .-..|.+-. . .++... ...+||.+..++. |.|++++..|.
T Consensus 2 ~v~~G~~v~l~C~~~~~~~~~-~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Ds 75 (98)
T cd04984 2 SVSPGETVTITCTGSSGNISG-NYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDE 75 (98)
T ss_pred ccCCCCCEEEEEEEcCCCcCC-CCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhC
Confidence 366899999999975442122 224565432 1 222211 1246899876655 88999987775
No 103
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=92.87 E-value=0.45 Score=30.99 Aligned_cols=59 Identities=22% Similarity=0.326 Sum_probs=36.3
Q ss_pred eeecCeEEEEccCCCCccceeEEeEEccCC------eeeecCcC----CCceEEEccCc---cEEEEeEeeecC
Q psy5692 19 VILGNTAVLRCQIPSYMSEYIIVTSWIQDD------VNIYLNTD----TGGKYVVLSSG---DLYVQIRLSITG 79 (98)
Q Consensus 19 VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd------~~I~p~~~----~dgKY~vlpsG---eL~Ir~v~~~~~ 79 (98)
|-.|.++.|.|.++..... .-.+|.+-. ..++.... ..+||.+.+++ .|.|++++.+|.
T Consensus 12 v~~G~~v~L~C~~~~~~~~--~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Ds 83 (106)
T cd04980 12 VSPGESATISCKASQSVSS--NYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPEDA 83 (106)
T ss_pred ECCCCCEEEEEEECCCCCC--CcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHHC
Confidence 3479999999997654312 246687542 23333211 23688886544 488888887763
No 104
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=92.78 E-value=0.26 Score=33.33 Aligned_cols=69 Identities=16% Similarity=0.334 Sum_probs=39.9
Q ss_pred ceeecCeEEEEccCCCC--ccceeEEeEEcc---C-C--eee-ecCc----CCC----ceEEEc-----cCccEEEEeEe
Q psy5692 18 NVILGNTAVLRCQIPSY--MSEYIIVTSWIQ---D-D--VNI-YLNT----DTG----GKYVVL-----SSGDLYVQIRL 75 (98)
Q Consensus 18 ~VirGNtAVLkC~IPs~--V~d~V~V~SW~~---D-d--~~I-~p~~----~~d----gKY~vl-----psGeL~Ir~v~ 75 (98)
.|++|.+|.|.|.+.+. ..+.. ...|.+ + . ..+ +-.. ..+ +|+... .+..|+|++++
T Consensus 9 ~~~~G~~v~L~C~~s~~~~~~~~~-~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~~v~ 87 (115)
T cd05880 9 EAVNGTDVRLKCTFSSSAPIGDTL-VITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIWQLQ 87 (115)
T ss_pred EEEcCCCEEEEEEEEeCCCCCCcE-EEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEeeCC
Confidence 46799999999997432 23333 355853 1 1 223 2211 123 344332 24559999999
Q ss_pred eecCCcceeeeeeh
Q psy5692 76 SITGNLSVKKMKVE 89 (98)
Q Consensus 76 ~~~~n~~~~~~~~~ 89 (98)
.+|. ..=.|.+.
T Consensus 88 ~~D~--G~Y~C~v~ 99 (115)
T cd05880 88 PTDN--GTYTCQVK 99 (115)
T ss_pred hhhC--EEEEEEEE
Confidence 9987 66666654
No 105
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=92.73 E-value=0.32 Score=32.54 Aligned_cols=61 Identities=15% Similarity=0.130 Sum_probs=40.6
Q ss_pred ecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEc--c-----CccEEEEeEee-ecCCcceeeeeeh
Q psy5692 21 LGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVL--S-----SGDLYVQIRLS-ITGNLSVKKMKVE 89 (98)
Q Consensus 21 rGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vl--p-----sGeL~Ir~v~~-~~~n~~~~~~~~~ 89 (98)
.|.+|.|.|.+-. +--...+|..|+..|.+ .+.||.+. + .+.|.|+++.. +|.. .-.|...
T Consensus 22 ~g~~v~L~C~a~G---~P~p~i~W~k~g~~l~~---~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G--~Y~C~A~ 90 (109)
T cd05773 22 GSSDANLVCQAQG---VPRVQFRWAKNGVPLDL---GNPRYEETTEHTGTVHTSILTIINVSAALDYA--LFTCTAH 90 (109)
T ss_pred CCCEEEEEEECcc---cCCCEEEEEECCEECCC---CCCeEEEEeeccCccceeEEEECcCCccCCCE--EEEEEEE
Confidence 5799999999743 22346899999877643 24577643 3 25688988863 5543 5677653
No 106
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=92.16 E-value=0.23 Score=32.28 Aligned_cols=66 Identities=12% Similarity=0.129 Sum_probs=35.2
Q ss_pred ecCeEEEEccCCCCc---cceeEEeEEccC-----C-eeeecCc--------CCCceEEEc----cCccEEEEeEeeecC
Q psy5692 21 LGNTAVLRCQIPSYM---SEYIIVTSWIQD-----D-VNIYLNT--------DTGGKYVVL----SSGDLYVQIRLSITG 79 (98)
Q Consensus 21 rGNtAVLkC~IPs~V---~d~V~V~SW~~D-----d-~~I~p~~--------~~dgKY~vl----psGeL~Ir~v~~~~~ 79 (98)
+|.+|+|.|.+++.- ..-.....|.+. . ..++-.. ...+|.... -+..|.|++++..|.
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~ 80 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS 80 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence 699999999986542 122345566654 1 2232211 112333321 256688888887774
Q ss_pred Ccceeeeee
Q psy5692 80 NLSVKKMKV 88 (98)
Q Consensus 80 n~~~~~~~~ 88 (98)
..=.|.+
T Consensus 81 --G~Y~C~v 87 (106)
T cd05714 81 --GRYRCEV 87 (106)
T ss_pred --EEEEEEE
Confidence 3344444
No 107
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=92.14 E-value=0.3 Score=30.12 Aligned_cols=46 Identities=13% Similarity=0.177 Sum_probs=30.4
Q ss_pred cCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEe
Q psy5692 22 GNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRL 75 (98)
Q Consensus 22 GNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~ 75 (98)
|.++.|.|..-..-.- ...|..++..|.+ +.++.+ ..+.|.|.+++
T Consensus 1 G~~v~L~C~a~G~P~P---~v~W~k~g~~l~~----~~~~~~-~~~~L~i~~~~ 46 (69)
T cd05739 1 GGSVNLTCVAVGAPMP---YVKWMKGGEELTK----EDEMPV-GRNVLELTNIY 46 (69)
T ss_pred CCeEEEEEEeeecCCC---EEEEEECCEECCC----ccceec-CccEEEEeccc
Confidence 7889999997433333 3559999966643 234433 45579999875
No 108
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=91.97 E-value=0.31 Score=31.82 Aligned_cols=52 Identities=12% Similarity=0.105 Sum_probs=30.4
Q ss_pred ceeecCeEEEEccCCCCccceeEEeEEccCCeee---ecCcCCCceEEEccCccEEEEeEeee
Q psy5692 18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNI---YLNTDTGGKYVVLSSGDLYVQIRLSI 77 (98)
Q Consensus 18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I---~p~~~~dgKY~vlpsGeL~Ir~v~~~ 77 (98)
.|.+|.+++|+|+.+. ++. .-.|.+++..- +......+++.. +++|..++..
T Consensus 11 vV~~G~~VTL~C~~~~---~~~-~f~l~k~g~~~~~~~~~~~~~~~~~a----~f~I~~~~~~ 65 (94)
T cd05711 11 VVPSGENVTLQCHSDI---RFD-RFILYKEGRSKPVLHLYEKHHGGFQA----SFPLGPVTPA 65 (94)
T ss_pred ccCCCCeEEEEEecCC---CCC-EEEEEECCCCCCceecccccCCeEEE----EEEecCCCcc
Confidence 5779999999998663 232 35898887321 111112244444 5666665543
No 109
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=91.91 E-value=0.36 Score=32.47 Aligned_cols=69 Identities=13% Similarity=0.145 Sum_probs=40.0
Q ss_pred ceeecCeEEEEccCCCC--c-cceeEEeEEccCC-e----ee-e---cC----cCCCceEEEc--c-C--ccEEEEeEee
Q psy5692 18 NVILGNTAVLRCQIPSY--M-SEYIIVTSWIQDD-V----NI-Y---LN----TDTGGKYVVL--S-S--GDLYVQIRLS 76 (98)
Q Consensus 18 ~VirGNtAVLkC~IPs~--V-~d~V~V~SW~~Dd-~----~I-~---p~----~~~dgKY~vl--p-s--GeL~Ir~v~~ 76 (98)
.+..|.+++|.|..+.. . .+-.....|.+.+ . .+ + .. ....|||.++ + . ..|.|++++.
T Consensus 10 ~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I~~l~~ 89 (119)
T cd05712 10 SVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLISDAQP 89 (119)
T ss_pred EEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEEccCCh
Confidence 45689999999965322 1 1112335788765 2 11 1 11 1234798884 2 2 3599999998
Q ss_pred ecCCcceeeeee
Q psy5692 77 ITGNLSVKKMKV 88 (98)
Q Consensus 77 ~~~n~~~~~~~~ 88 (98)
.|. +.=-|.+
T Consensus 90 ~Ds--g~Y~C~~ 99 (119)
T cd05712 90 EDS--GKYFFRV 99 (119)
T ss_pred hhC--eEEEEEE
Confidence 884 4444444
No 110
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=91.66 E-value=0.4 Score=30.58 Aligned_cols=51 Identities=18% Similarity=0.197 Sum_probs=32.2
Q ss_pred ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecC
Q psy5692 18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITG 79 (98)
Q Consensus 18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~ 79 (98)
.|..|.+.+|+|..+.-.. ..-..|.+++..+.. .. -++.|+|.++..+|.
T Consensus 10 ~V~~G~~vtL~C~~~~~~~--~~~~~w~k~g~~~~~-~~--------~~~~l~I~~~~~~ds 60 (83)
T cd05753 10 VVFEGEPLVLRCHGWKNKP--VYKVTYYRDGKAKKY-SH--------SNSNLSIPQATLSDS 60 (83)
T ss_pred eecCCCCEEEEeeCCCCCc--ceEEEEEECCeEccc-cC--------CCceEEECccCHHHC
Confidence 5789999999999643211 234679998854421 11 145677777766553
No 111
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=91.55 E-value=0.84 Score=28.25 Aligned_cols=59 Identities=12% Similarity=0.142 Sum_probs=36.6
Q ss_pred EEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEE-ccCccEEEEeEee--ecCCcceeeeee
Q psy5692 25 AVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVV-LSSGDLYVQIRLS--ITGNLSVKKMKV 88 (98)
Q Consensus 25 AVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~v-lpsGeL~Ir~v~~--~~~n~~~~~~~~ 88 (98)
++|.|.+-..- . -..+|.+|+..|-+. .++++.+ .++|.|.|+++.. ....+..-.|..
T Consensus 1 i~l~C~~~G~P--~-P~v~W~k~g~~l~~~--~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A 62 (77)
T cd05733 1 IVIKCEAKGNP--P-PTFSWTRNGTHFDPE--KDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYA 62 (77)
T ss_pred CEEEeeCcccC--C-CeEEEEECCeECCCC--CCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEE
Confidence 46889864321 2 247899998766442 3456666 4689999999854 122334455544
No 112
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=91.19 E-value=0.75 Score=30.17 Aligned_cols=56 Identities=16% Similarity=0.292 Sum_probs=35.2
Q ss_pred eEEEEccCCCCccceeEEeEEccCC-e----ee---ecCc------CCCceEEEc-----cCccEEEEeEeeecC
Q psy5692 24 TAVLRCQIPSYMSEYIIVTSWIQDD-V----NI---YLNT------DTGGKYVVL-----SSGDLYVQIRLSITG 79 (98)
Q Consensus 24 tAVLkC~IPs~V~d~V~V~SW~~Dd-~----~I---~p~~------~~dgKY~vl-----psGeL~Ir~v~~~~~ 79 (98)
+|+|.|.+++...+-..-..|.+.. . .| ++.. +..||.... -++.|.|+|++.+|.
T Consensus 2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~ 76 (100)
T cd05888 2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADE 76 (100)
T ss_pred CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccc
Confidence 5899999976554556678898853 1 22 2211 122444433 277899999998874
No 113
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=91.10 E-value=0.42 Score=31.35 Aligned_cols=64 Identities=17% Similarity=0.213 Sum_probs=39.6
Q ss_pred ceeecCeEEEEccCCCCccceeEEeEEccCC-----eeee-cC--------cCCCceEEEcc----CccEEEEeEeeecC
Q psy5692 18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNIY-LN--------TDTGGKYVVLS----SGDLYVQIRLSITG 79 (98)
Q Consensus 18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-----~~I~-p~--------~~~dgKY~vlp----sGeL~Ir~v~~~~~ 79 (98)
.|-.|.+|.|.|.+.. . .....|.+.. ..|+ -. ....+||.+.- +-.|.|++++.+|.
T Consensus 9 ~v~~G~~v~l~C~~~~--~--~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~~Ds 84 (110)
T cd05899 9 IKGRGQSVTLRCSQTS--G--HDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEPEDS 84 (110)
T ss_pred EEcCCCcEEEEEEECC--C--CCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCChhhC
Confidence 4558999999999875 2 2456787753 2222 11 11247888753 23599999988774
Q ss_pred Ccceeeee
Q psy5692 80 NLSVKKMK 87 (98)
Q Consensus 80 n~~~~~~~ 87 (98)
++=-|.
T Consensus 85 --g~Y~Ca 90 (110)
T cd05899 85 --AVYLCA 90 (110)
T ss_pred --EEEEEE
Confidence 444443
No 114
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=91.07 E-value=0.23 Score=30.58 Aligned_cols=53 Identities=11% Similarity=0.094 Sum_probs=35.6
Q ss_pred EEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecCCcceeeeee
Q psy5692 26 VLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITGNLSVKKMKV 88 (98)
Q Consensus 26 VLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~n~~~~~~~~ 88 (98)
.|.|.+..+-.- ...|++|+..|.+ +.+| ..+.+.|.|.+++.+|. ..-.|..
T Consensus 2 ~l~c~v~g~P~p---~v~W~k~g~~l~~----~~~~-~~~~~~L~I~~v~~~D~--G~YtC~a 54 (71)
T cd04976 2 RLPVKVKAYPPP---EIQWYKNGKLISE----KNRT-KKSGHSLTIKDVTEEDA--GNYTVVL 54 (71)
T ss_pred EEEeEEEEeCCC---EEEEEECCEECCC----CCEE-EcCCCEEEECcCCHHHC--EEEEEEE
Confidence 477887554433 3599999977744 3455 45788999999988875 3344443
No 115
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=91.06 E-value=0.9 Score=30.31 Aligned_cols=43 Identities=14% Similarity=0.339 Sum_probs=28.6
Q ss_pred eecCeEEEEccCCCC-ccceeEEeEEccCC-eeee-----cCcCCCceEEE
Q psy5692 20 ILGNTAVLRCQIPSY-MSEYIIVTSWIQDD-VNIY-----LNTDTGGKYVV 63 (98)
Q Consensus 20 irGNtAVLkC~IPs~-V~d~V~V~SW~~Dd-~~I~-----p~~~~dgKY~v 63 (98)
..|..|+|.|.+..| -..-+ ..+|.+|+ ..+- +..+.||-|.+
T Consensus 12 ~~~~~~tLtC~v~gf~yP~~i-~v~W~r~~~~~~~~~~~~~~~~~dgty~~ 61 (96)
T cd07696 12 LLTKSVKLTCLVTNLTSPEGV-NVTWTRGSGEPVKASIQPPESHNNATLSV 61 (96)
T ss_pred ccCCCeEEEEEEeCCCCCCCc-EEEEEECCeEeeeEEecccccCCCCCEEE
Confidence 468899999999988 44444 67899986 3321 12234666665
No 116
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=90.99 E-value=0.23 Score=30.98 Aligned_cols=53 Identities=13% Similarity=0.119 Sum_probs=35.3
Q ss_pred ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecC
Q psy5692 18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITG 79 (98)
Q Consensus 18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~ 79 (98)
.+..|.++.|.|..... +-.....|.+++..+ |. + ....+|.|.|.+++.+|.
T Consensus 12 ~v~~G~~v~L~C~~~~~--~~~~~i~W~~~~~~~-~~-----~-~~~~~~~L~I~~v~~~Ds 64 (85)
T cd05754 12 EVRPGADVSFICRAKSK--SPAYTLVWTRVGGGL-PS-----R-AMDFNGILTIRNVQLSDA 64 (85)
T ss_pred EEcCCCCEEEEEEcCCC--CCCcEEEEEECCCcC-CC-----c-ccccCCEEEECCCCHHHC
Confidence 45689999999997431 112446899987433 31 1 123468899999988775
No 117
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=90.92 E-value=0.76 Score=30.33 Aligned_cols=43 Identities=14% Similarity=0.326 Sum_probs=29.6
Q ss_pred eecCeEEEEccCCCCccceeEEeEEccCCeeeecC-------cCCCceEEE
Q psy5692 20 ILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLN-------TDTGGKYVV 63 (98)
Q Consensus 20 irGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~-------~~~dgKY~v 63 (98)
..|+.++|.|.+..|--.-+. .+|.+|+..+... .+.||.|.+
T Consensus 12 ~~~~~~~L~C~~~gFyP~~i~-v~W~~~g~~~~~~~~~~~~~~~~dgTy~~ 61 (94)
T cd05766 12 SLSHPHLLVCHVWGFYPPEIT-VKWFKNGQEETEGVVSTELIPNGDWTYQI 61 (94)
T ss_pred cCCCCeEEEEEEeeecCCCCE-EEEEECCeecCCCceecceEECCCCcEEE
Confidence 358899999999877665544 5799998654332 134666766
No 118
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=90.60 E-value=0.27 Score=29.07 Aligned_cols=53 Identities=11% Similarity=0.080 Sum_probs=33.3
Q ss_pred EEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEE-ccCccEEEEeEeeecCCcceeeee
Q psy5692 25 AVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVV-LSSGDLYVQIRLSITGNLSVKKMK 87 (98)
Q Consensus 25 AVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~v-lpsGeL~Ir~v~~~~~n~~~~~~~ 87 (98)
+.|.|.+..+-.- ..+|.+++..+.+ ++... ...+.|.|.+++.+|. ..-.|.
T Consensus 1 v~l~C~~~g~P~p---~v~W~k~~~~~~~-----~~~~~~~~~~~L~i~~v~~~D~--G~Y~C~ 54 (71)
T cd05731 1 LLLECIAEGLPTP---EISWIKIGGELPA-----DRTKFENFNKTLKIDNVSEEDD--GEYRCT 54 (71)
T ss_pred CEEEEEeeEecCC---eEEEEECCeECCC-----CceeEecCCCEEEECCCCHHHC--EEEEEE
Confidence 3688987654433 3799999865532 23333 3467899999988773 234444
No 119
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=90.24 E-value=0.45 Score=31.69 Aligned_cols=55 Identities=13% Similarity=0.137 Sum_probs=38.7
Q ss_pred ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEcc---------CccEEEEeEeeecC
Q psy5692 18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLS---------SGDLYVQIRLSITG 79 (98)
Q Consensus 18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlp---------sGeL~Ir~v~~~~~ 79 (98)
.+..|-.+.|.|.+-.+-.- ...|++|+..|..+ .+..+.. .+.|.|.+++.+|.
T Consensus 14 ~~~~~~~~~l~~~v~g~P~P---~v~W~kdg~~l~~~----~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~ 77 (101)
T cd05859 14 FANLHEVKEFVVEVEAYPPP---QIRWLKDNRTLIEN----LTEITTSEHNVQETRYVSKLKLIRAKEEDS 77 (101)
T ss_pred EEecCCcEEEEEEEEEeCCC---ceEEEECCEECcCC----cceEEeccccccceeeccEEEEeeCCHHHC
Confidence 56688999999999665544 57899999777432 2222221 35799999888874
No 120
>PHA02785 IL-beta-binding protein; Provisional
Probab=90.20 E-value=0.52 Score=37.31 Aligned_cols=56 Identities=9% Similarity=0.105 Sum_probs=40.4
Q ss_pred ceeecCeEEEEccCC-CCcccee-EEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecC
Q psy5692 18 NVILGNTAVLRCQIP-SYMSEYI-IVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITG 79 (98)
Q Consensus 18 ~VirGNtAVLkC~IP-s~V~d~V-~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~ 79 (98)
.+..|.+|.|.|..+ .|.+... ....|..++. + .++|+..+++|.|.|.|++.+|+
T Consensus 132 ~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~-~-----~~~r~~~~~~~~L~i~~v~~~d~ 189 (326)
T PHA02785 132 IVNERSTGEMVCPNINAFIASNVNADIIWSGHRR-L-----RNKRLKQRTPGIITIEDVRKNDA 189 (326)
T ss_pred eecccCcEEEECCChhhcccCCCCceEEEccCCc-c-----CCcceEecCCCeEEEeecChhhC
Confidence 456889999999743 3333222 4678976542 1 35799999999999999998876
No 121
>KOG4221|consensus
Probab=90.15 E-value=0.28 Score=46.85 Aligned_cols=69 Identities=19% Similarity=0.346 Sum_probs=50.1
Q ss_pred eEEEEeeeeceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecCCc
Q psy5692 9 YEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITGNL 81 (98)
Q Consensus 9 Yev~V~d~~~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~n~ 81 (98)
+.+-++-+ -+|+|.+++|-|. +-+.........|-.|...+ +..+|.+-..||+|.|||.++..-..|.
T Consensus 42 ~~f~~ep~-d~~~~~svlLecs-~~~~~~~~~~i~wkkDg~~l--~e~~d~~~~~LsNgSl~i~~v~~~kh~~ 110 (1381)
T KOG4221|consen 42 LQFLLEPS-DAMEGSSVLLECS-AYAAGGTSVKIEWKKDGSQL--NEVYDDRRQLLSNGSLYISSVLASKHNK 110 (1381)
T ss_pred ceEEeccc-ccccccceEEecc-ccccCCCCeeEEEccCchhh--hhhhhhHHhhccCCceeEeeeccccccc
Confidence 33444444 4599999999999 55555467778899998433 2235688899999999999998865554
No 122
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=90.01 E-value=0.23 Score=31.96 Aligned_cols=33 Identities=24% Similarity=0.248 Sum_probs=23.1
Q ss_pred EeeeeceeecCeEEEEccCCCCccceeEEeEEccCCe
Q psy5692 13 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDV 49 (98)
Q Consensus 13 V~d~~~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~ 49 (98)
++-+..|..|.+++|+|.-+.... ...|++++.
T Consensus 7 a~p~~vV~~G~~VtL~C~~~~~~~----~f~l~k~g~ 39 (91)
T cd05751 7 AEPSSVVPLGKPVTLRCQGPYGAV----EYRLYREGS 39 (91)
T ss_pred ecCCCccCCCCcEEEEEecCCCCC----EEEEEECCC
Confidence 333347889999999999874433 347887763
No 123
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=89.90 E-value=1.5 Score=27.45 Aligned_cols=60 Identities=8% Similarity=0.127 Sum_probs=38.3
Q ss_pred EEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEE-ccCccEEEEeEeee--cCCcceeeeeeh
Q psy5692 25 AVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVV-LSSGDLYVQIRLSI--TGNLSVKKMKVE 89 (98)
Q Consensus 25 AVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~v-lpsGeL~Ir~v~~~--~~n~~~~~~~~~ 89 (98)
.+|.|.+-.+- .-...|.+++..|.. ..+++|.+ .++|.|.|.++... +.....-+|...
T Consensus 1 ~~l~C~~~G~P---~P~v~W~k~g~~~~~--~~~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~ 63 (77)
T cd05875 1 IIIECEAKGNP---VPTFQWTRNGKFFNV--AKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFAR 63 (77)
T ss_pred CEEEEeccccC---CCEEEEEECCEEccC--cCCCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEE
Confidence 36889875442 334689999865422 23677877 47999999987532 122356677654
No 124
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=89.47 E-value=0.8 Score=27.28 Aligned_cols=59 Identities=15% Similarity=0.257 Sum_probs=35.4
Q ss_pred EEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEE---ccCccEEEEeEeeecCCcceeeeeeh
Q psy5692 26 VLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVV---LSSGDLYVQIRLSITGNLSVKKMKVE 89 (98)
Q Consensus 26 VLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~v---lpsGeL~Ir~v~~~~~n~~~~~~~~~ 89 (98)
+|.|.+..+-.. ....|++++..|..+... ..+.+ ...+.|.|.++..+|. ..-.|..+
T Consensus 2 ~l~C~~~g~~P~--p~~~W~k~g~~l~~~~~~-~~~~~~~~~~~~~L~I~~~~~~D~--G~Y~C~a~ 63 (75)
T cd05750 2 VLKCEATSEYPS--LRFKWFKDGKELNRKNKP-RNIKIRNKKKNSELQINKAKLADS--GEYTCVVE 63 (75)
T ss_pred EEEEEccCCCCC--ceEEEEcCCeeccccCCc-ceEEEEecCceEEEEEccCCcccC--eEEEEEEE
Confidence 689998752222 355899998766442211 11222 2357899999988775 34555543
No 125
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=89.32 E-value=1.6 Score=29.18 Aligned_cols=58 Identities=19% Similarity=0.254 Sum_probs=37.5
Q ss_pred eeecCeEEEEccCCCCccceeEEeEEccCCeeeec------CcCCCceEEEc------c-CccEEEEeEeee
Q psy5692 19 VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYL------NTDTGGKYVVL------S-SGDLYVQIRLSI 77 (98)
Q Consensus 19 VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p------~~~~dgKY~vl------p-sGeL~Ir~v~~~ 77 (98)
+-.|+.++|.|.+-.|----+ -.+|.+|+..+.. ..+.||.|.+. | +|+.|-..|+-+
T Consensus 12 ~~~g~~~~L~C~a~gFyP~~i-~v~W~~dg~~~~~~~~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V~H~ 82 (93)
T cd05770 12 AENGKPNVLNCYVTGFHPPDI-EIRLLKNGVKIPKVEQSDLSFSKDWTFYLLKSTEFTPTKGDEYACRVRHN 82 (93)
T ss_pred CcCCCceEEEEEEEEEeCCCC-EEEEEECCEECCCcEECcEEECCCCCEEEEEEEEECCCCCCeEEEEEEEC
Confidence 346788899999976554444 4579999855421 11457888862 2 577777666553
No 126
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=89.25 E-value=0.43 Score=32.17 Aligned_cols=30 Identities=13% Similarity=0.422 Sum_probs=23.7
Q ss_pred ecCeEEEEccCCCCccceeEEeEEccCCeee
Q psy5692 21 LGNTAVLRCQIPSYMSEYIIVTSWIQDDVNI 51 (98)
Q Consensus 21 rGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I 51 (98)
.|+.|+|.|.+-.|--.-++| +|.+|...+
T Consensus 15 ~~~~~tL~C~a~gFyP~~I~v-~W~kng~~~ 44 (96)
T cd07697 15 KQGQGIYLCLLENFFPDVIQV-HWREGNSPS 44 (96)
T ss_pred cCCCEEEEEEEEEEeCCCeEE-EEEECCEEC
Confidence 578999999998777776554 799998554
No 127
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=89.15 E-value=1.5 Score=28.78 Aligned_cols=60 Identities=12% Similarity=0.207 Sum_probs=36.3
Q ss_pred eeecCeEEEEccCCCCccceeEEeEEccCC------eeeecCc---------CCCceEEEccC-----ccEEEEeEeeec
Q psy5692 19 VILGNTAVLRCQIPSYMSEYIIVTSWIQDD------VNIYLNT---------DTGGKYVVLSS-----GDLYVQIRLSIT 78 (98)
Q Consensus 19 VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd------~~I~p~~---------~~dgKY~vlps-----GeL~Ir~v~~~~ 78 (98)
+-.|.++.|.|.++.. ..--...+|.+.. ..++... ...+||.+..+ ..|-|++++.+|
T Consensus 10 ~~~G~~v~l~C~~~~~-~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~D 88 (116)
T cd04982 10 REESKSVTISCKVSGI-DFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQNLEKED 88 (116)
T ss_pred eCCCCCEEEEEEEeCC-CccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEECCHHH
Confidence 3479999999998642 1112367787752 1122211 12578887633 358888888866
Q ss_pred C
Q psy5692 79 G 79 (98)
Q Consensus 79 ~ 79 (98)
.
T Consensus 89 s 89 (116)
T cd04982 89 S 89 (116)
T ss_pred C
Confidence 3
No 128
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=88.90 E-value=0.76 Score=35.15 Aligned_cols=59 Identities=17% Similarity=0.331 Sum_probs=34.4
Q ss_pred ceeecCeEEEEccC---CC-------CccceeEEeEEccCCee-eecCc-CC-------CceEEEccCccEEEEeEeeec
Q psy5692 18 NVILGNTAVLRCQI---PS-------YMSEYIIVTSWIQDDVN-IYLNT-DT-------GGKYVVLSSGDLYVQIRLSIT 78 (98)
Q Consensus 18 ~VirGNtAVLkC~I---Ps-------~V~d~V~V~SW~~Dd~~-I~p~~-~~-------dgKY~vlpsGeL~Ir~v~~~~ 78 (98)
.|..|.+|+|+|.+ |+ |+.+| -..|.+++.. ++... .. ..++. .++|.|.|++++.+|
T Consensus 33 ~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~--~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~-~r~~~L~I~~v~~~D 109 (227)
T PHA02826 33 YAKFGDPMVLLCTGKHYKKSIFFDKTFITSY--NVTWSKTDSLAFVRDSGARTKIKKITHNEIG-DRSENLWIGNVINID 109 (227)
T ss_pred EecCCCCEEEEccccccccccccccccCCCc--cEEEEeCCeEEEEEcCCCcccccccccccee-cCCCeEEECCCChHH
Confidence 67899999999995 21 12222 3449988832 22211 00 12221 246788888887776
Q ss_pred C
Q psy5692 79 G 79 (98)
Q Consensus 79 ~ 79 (98)
.
T Consensus 110 s 110 (227)
T PHA02826 110 E 110 (227)
T ss_pred C
Confidence 5
No 129
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=88.36 E-value=1.3 Score=30.47 Aligned_cols=67 Identities=13% Similarity=0.157 Sum_probs=41.8
Q ss_pred ecCeEEEEccCCCCccce---------eEEeEEccCC----eeeec--------CcCCCceEEEcc------CccEEEEe
Q psy5692 21 LGNTAVLRCQIPSYMSEY---------IIVTSWIQDD----VNIYL--------NTDTGGKYVVLS------SGDLYVQI 73 (98)
Q Consensus 21 rGNtAVLkC~IPs~V~d~---------V~V~SW~~Dd----~~I~p--------~~~~dgKY~vlp------sGeL~Ir~ 73 (98)
.|.+++|.|.+.....+- .....|.+-. ..++- ..+..+|+.+.. +.-|.|+|
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n 80 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE 80 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence 489999999987444321 2345577531 22221 123456888742 67799999
Q ss_pred EeeecCCcceeeeeeh
Q psy5692 74 RLSITGNLSVKKMKVE 89 (98)
Q Consensus 74 v~~~~~n~~~~~~~~~ 89 (98)
++..|. +.=.|.+.
T Consensus 81 l~~sDs--G~Y~C~V~ 94 (112)
T cd05900 81 LRSNDS--GTYRCEVM 94 (112)
T ss_pred cccccC--EEEEEEEe
Confidence 999885 56666654
No 130
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=88.12 E-value=0.99 Score=27.24 Aligned_cols=56 Identities=14% Similarity=0.234 Sum_probs=37.4
Q ss_pred EEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEcc---CccEEEEeEeeecCCcceeeeeeh
Q psy5692 25 AVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLS---SGDLYVQIRLSITGNLSVKKMKVE 89 (98)
Q Consensus 25 AVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlp---sGeL~Ir~v~~~~~n~~~~~~~~~ 89 (98)
..|.|.+-..-.- ...|.+++..|.+ ++++.+.. .+.|.|.+++..|.- .-+|..+
T Consensus 2 ~~l~c~~~G~P~p---~v~W~k~g~~l~~----~~~~~~~~~~~~~~L~I~~~~~~D~G--~Y~C~a~ 60 (74)
T cd05748 2 VRLEVPISGRPTP---TVTWSKDGKPLKL----SGRVQIETTASSTSLVIKNAERSDSG--KYTLTLK 60 (74)
T ss_pred EEEEeeEeeeCCC---eEEEEECCEEcCC----CCeEEEEECCCeEEEEECCCCcCcCE--EEEEEEE
Confidence 5688877433222 4789999976633 56777764 457999999877754 4566554
No 131
>KOG3513|consensus
Probab=87.69 E-value=0.93 Score=42.54 Aligned_cols=59 Identities=17% Similarity=0.314 Sum_probs=45.0
Q ss_pred eeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecCC
Q psy5692 19 VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITGN 80 (98)
Q Consensus 19 VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~n 80 (98)
|..|-.++|.|.=|..--+ ...+|+..++.-+.. ....|+.+..+|.||+.+|..+|..
T Consensus 148 v~eG~~~~L~C~pP~~~P~--l~~~W~~~~~~~~~~-~~~~r~~~~~~G~Lyfs~V~~~D~~ 206 (1051)
T KOG3513|consen 148 VEEGDGVVLPCNPPAHFPP--LRYYWMLNEFPHFVQ-IDNRRVFSQENGNLYFSNVETSDFG 206 (1051)
T ss_pred EEeCCceEEeCCCCCCCCC--ccEEehhccCCcccc-cCcceeEecccceEEEeecchhhcC
Confidence 4578899999996666655 677999998332331 1235888899999999999999984
No 132
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=86.19 E-value=2.9 Score=28.08 Aligned_cols=54 Identities=22% Similarity=0.333 Sum_probs=35.1
Q ss_pred eEEEEccCCCCccceeEEeEEccCC----eee--ecCc-------CCCceEEEcc----CccEEEEeEeeecC
Q psy5692 24 TAVLRCQIPSYMSEYIIVTSWIQDD----VNI--YLNT-------DTGGKYVVLS----SGDLYVQIRLSITG 79 (98)
Q Consensus 24 tAVLkC~IPs~V~d~V~V~SW~~Dd----~~I--~p~~-------~~dgKY~vlp----sGeL~Ir~v~~~~~ 79 (98)
.+.|.|..|. ...+.-++|.+-+ ..| |... ...||-..+. ++.|.|+||+.+|.
T Consensus 2 ~vtL~C~~~~--~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~ 72 (96)
T cd05889 2 KMKLECVYPK--TGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDV 72 (96)
T ss_pred CEEEEeEcCC--CCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccC
Confidence 5789999885 4568888898853 133 3111 2235555542 58899999988875
No 133
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=85.85 E-value=4 Score=25.13 Aligned_cols=61 Identities=10% Similarity=0.044 Sum_probs=32.5
Q ss_pred EEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEe----Eee-ecCCcceeeeeehH
Q psy5692 25 AVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQI----RLS-ITGNLSVKKMKVEE 90 (98)
Q Consensus 25 AVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~----v~~-~~~n~~~~~~~~~~ 90 (98)
+.|.|.+..|-.. ...+|.+++..|.. ....-.++|+|.++..- +.. ...+...-.|.++-
T Consensus 2 ~~L~C~v~g~~P~--~~v~W~~~g~~l~~---~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n 67 (82)
T cd05759 2 YNLTCRARGAKPA--AEIIWFRDGEVLDG---ATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARN 67 (82)
T ss_pred EEEEEEEeCccCC--CEEEEEECCEEccC---ceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcC
Confidence 5799998755222 36899999876532 11122344555432211 112 22344677787753
No 134
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=85.56 E-value=4.6 Score=25.14 Aligned_cols=59 Identities=17% Similarity=0.265 Sum_probs=36.6
Q ss_pred EEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEcc-CccEEEEeEeeecC--Ccceeeeeeh
Q psy5692 26 VLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLS-SGDLYVQIRLSITG--NLSVKKMKVE 89 (98)
Q Consensus 26 VLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlp-sGeL~Ir~v~~~~~--n~~~~~~~~~ 89 (98)
.|.|.+-.. .. -..+|.+++..+.+ ..++++.+.+ +|.|.|+.+...+. ....-.|...
T Consensus 2 ~l~C~a~G~--P~-P~i~W~k~g~~l~~--~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~ 63 (77)
T cd05874 2 VIQCEAKGK--PP-PSFSWTRNGTHFDI--DKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTAR 63 (77)
T ss_pred EEEeeCccc--CC-CeEEEEECCeECCC--cCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEE
Confidence 578876322 22 23599999865522 2345677665 79999988876642 3456666543
No 135
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=85.27 E-value=2.1 Score=28.26 Aligned_cols=58 Identities=17% Similarity=0.251 Sum_probs=35.0
Q ss_pred eeecCeEEEEccCCCCccceeEEeEEccCC-----eeeec---C--cCCCceEEEc--cC-c--cEEEEeEeeec
Q psy5692 19 VILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNIYL---N--TDTGGKYVVL--SS-G--DLYVQIRLSIT 78 (98)
Q Consensus 19 VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-----~~I~p---~--~~~dgKY~vl--ps-G--eL~Ir~v~~~~ 78 (98)
|-.|.++.|.|.+++.... .-..|.+-. ..|+- . ....+||.+. ++ + .|-|.+++.+|
T Consensus 11 ~~~G~~v~L~C~~~~~~~~--~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~D 83 (116)
T cd07706 11 VQVGEEVTLNCRYETSWTN--YYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLED 83 (116)
T ss_pred EcCCCCEEEEEEEeCCCCc--eEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHH
Confidence 4589999999997643322 456677642 22221 1 1235789885 22 2 47777877665
No 136
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=85.01 E-value=3.1 Score=25.85 Aligned_cols=30 Identities=20% Similarity=0.615 Sum_probs=21.5
Q ss_pred ecCeEEEEccCCCCccceeEEeEEccCCeee
Q psy5692 21 LGNTAVLRCQIPSYMSEYIIVTSWIQDDVNI 51 (98)
Q Consensus 21 rGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I 51 (98)
.|+.+.|.|.+..|--+ ..-.+|.+|+..+
T Consensus 12 ~~~~~~L~C~a~g~~P~-~~~i~W~~~g~~~ 41 (95)
T cd00098 12 LGGSVTLTCLATGFYPP-DITVTWLKNGKEL 41 (95)
T ss_pred cCCCeEEEEEEeeEECC-CcEEEEEECCEEC
Confidence 68999999998733211 2357899998655
No 137
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=83.94 E-value=1 Score=28.05 Aligned_cols=64 Identities=13% Similarity=0.057 Sum_probs=33.8
Q ss_pred cCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEE-Ec---cCccEEEEeEeeecCCcceeeeee
Q psy5692 22 GNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYV-VL---SSGDLYVQIRLSITGNLSVKKMKV 88 (98)
Q Consensus 22 GNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~-vl---psGeL~Ir~v~~~~~n~~~~~~~~ 88 (98)
|.++.|.|.+...-. -..-..|......+........+.. .. ..+.|.|++++..|. ..=.|..
T Consensus 1 Ge~~~L~C~~~g~~~-~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~Ds--G~Y~C~a 68 (84)
T cd05742 1 GETLVLNCTVLTELN-EGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDS--GTYTCAA 68 (84)
T ss_pred CCeEEEEEEEEeCCC-ccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhC--EEEEEEE
Confidence 778999999864311 2234678765532211000011111 11 246899999987764 4444544
No 138
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=83.80 E-value=3.2 Score=27.80 Aligned_cols=31 Identities=26% Similarity=0.557 Sum_probs=23.2
Q ss_pred eecCeEEEEccCCCCccceeEEeEEccCCeee
Q psy5692 20 ILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNI 51 (98)
Q Consensus 20 irGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I 51 (98)
..|..|.|.|.+..|--.- ...+|.+|+..+
T Consensus 14 ~~~~~~tL~C~a~gFyP~~-i~v~W~k~g~~~ 44 (102)
T cd05768 14 SLQETATLTCLVKGFSPSD-IFVKWLQNGQPL 44 (102)
T ss_pred CcCCceEEEEEEeeEeCCC-CEEEEEECCEEC
Confidence 4578999999998765543 456899998544
No 139
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=83.29 E-value=3.8 Score=27.57 Aligned_cols=54 Identities=19% Similarity=0.234 Sum_probs=35.3
Q ss_pred eEEEEccCCCCccceeEEeEEccCC----eee--ec---C----cCCCceEEEc----cCccEEEEeEeeecC
Q psy5692 24 TAVLRCQIPSYMSEYIIVTSWIQDD----VNI--YL---N----TDTGGKYVVL----SSGDLYVQIRLSITG 79 (98)
Q Consensus 24 tAVLkC~IPs~V~d~V~V~SW~~Dd----~~I--~p---~----~~~dgKY~vl----psGeL~Ir~v~~~~~ 79 (98)
.+.|.|.++. .+.+.-.+|.+.+ ..| |. + ....||-... -++.|.|+|++.+|.
T Consensus 2 ~vtL~C~~~~--~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~ 72 (96)
T cd05887 2 NVTLKCRIQV--NETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDI 72 (96)
T ss_pred CEEEEEEecC--CCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCcccc
Confidence 5899999874 3467788897642 233 21 1 1234555552 378999999999886
No 140
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=83.27 E-value=2.4 Score=27.84 Aligned_cols=59 Identities=15% Similarity=0.154 Sum_probs=33.5
Q ss_pred eeecCeEEEEccCCCCccceeEEeEEccCCee---------eecC-cC--------CCceEEE--ccCc---cEEEEeEe
Q psy5692 19 VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVN---------IYLN-TD--------TGGKYVV--LSSG---DLYVQIRL 75 (98)
Q Consensus 19 VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~---------I~p~-~~--------~dgKY~v--lpsG---eL~Ir~v~ 75 (98)
|-.|.+|.|.|.+...- ......|.+-... ++-+ .. ..+||.+ .+++ -|.|.+++
T Consensus 3 v~~G~~vtL~C~~~~~~--~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~ 80 (107)
T cd07700 3 VQTNNTVKLSCEAKGIS--ENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVK 80 (107)
T ss_pred EcCCCCEEEEEEEecCC--CCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCC
Confidence 44799999999965321 2236678765411 1111 10 1357765 3333 38888887
Q ss_pred eecC
Q psy5692 76 SITG 79 (98)
Q Consensus 76 ~~~~ 79 (98)
.+|.
T Consensus 81 ~~Ds 84 (107)
T cd07700 81 PEDS 84 (107)
T ss_pred HHHC
Confidence 7763
No 141
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=82.35 E-value=2.3 Score=29.11 Aligned_cols=44 Identities=27% Similarity=0.484 Sum_probs=30.0
Q ss_pred eecCeEEEEccCCCCc-cceeEEeEEccCCe--ee--ecCcCCCceEEEc
Q psy5692 20 ILGNTAVLRCQIPSYM-SEYIIVTSWIQDDV--NI--YLNTDTGGKYVVL 64 (98)
Q Consensus 20 irGNtAVLkC~IPs~V-~d~V~V~SW~~Dd~--~I--~p~~~~dgKY~vl 64 (98)
+.|.+|.|.|.|..|- -+-+ ..+|.+|+. .. .|..+.||.|.+.
T Consensus 17 ~~~~~atLtClV~~f~~P~~i-~V~W~~~g~~~~~~t~~~~~~dgTys~~ 65 (99)
T cd04986 17 LLGSSASLTCTLSGLRDPEGA-VFTWTPSGGKEAVQTSAESDQCGCYSVS 65 (99)
T ss_pred CcCCccEEEEEEeccCCCCCe-EEEEEECCccCcEEcCcccCCCCCEEEE
Confidence 3678999999999776 5445 589999962 11 1233557777763
No 142
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=82.30 E-value=5.6 Score=27.21 Aligned_cols=33 Identities=12% Similarity=0.426 Sum_probs=24.3
Q ss_pred ceeecCeEEEEccCCCCccceeEEeEEccCCeee
Q psy5692 18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNI 51 (98)
Q Consensus 18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I 51 (98)
..+.|..++|.|.+..|--.-+ ...|.+|+..+
T Consensus 17 ~~~~g~~~tL~C~a~gF~P~~i-~v~W~kng~~~ 49 (111)
T cd05772 17 RANPGQSVNFTCSAHGFSPRDI-TVKWLKNGNEL 49 (111)
T ss_pred ccCCCCCEEEEEEEeeEeCCCC-EEEEEECCEEC
Confidence 4557888999999986654433 45799998665
No 143
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=81.55 E-value=3.6 Score=27.22 Aligned_cols=30 Identities=20% Similarity=0.492 Sum_probs=23.9
Q ss_pred ecCeEEEEccCCCCccceeEEeEEccCCeee
Q psy5692 21 LGNTAVLRCQIPSYMSEYIIVTSWIQDDVNI 51 (98)
Q Consensus 21 rGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I 51 (98)
.|+.+.|.|.+..|-..-+. .+|.+|+..+
T Consensus 16 ~~~~~~L~C~~~gfyP~~i~-v~W~~~g~~~ 45 (100)
T cd07699 16 KSGKATLVCLINDFYPGFAT-VQWKVDGATV 45 (100)
T ss_pred cCCCcEEEEEEEeEECCCCE-EEEEECCEEC
Confidence 57889999999887765554 7899998655
No 144
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=81.14 E-value=8.7 Score=24.09 Aligned_cols=61 Identities=11% Similarity=0.075 Sum_probs=33.5
Q ss_pred EEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEE-EEe---Eeee-cCCcceeeeeehHH
Q psy5692 25 AVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLY-VQI---RLSI-TGNLSVKKMKVEEE 91 (98)
Q Consensus 25 AVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~-Ir~---v~~~-~~n~~~~~~~~~~~ 91 (98)
+.|.|.+..+--. .-.+|.+++..|.. .......|+|.+| +.. +... .+|.+...|.++-+
T Consensus 2 ~~L~C~~~~~~P~--~~v~W~~~~~~l~~----~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~ 67 (82)
T cd05761 2 VELTCTSSGSKPA--ATIRWFKGDKELKG----VKLKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHP 67 (82)
T ss_pred EEEEEEecCcCcC--CeEEEEECCEEccC----ceeeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeCh
Confidence 6899998655333 38899999866632 1133333333332 221 1222 23447788877643
No 145
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=81.08 E-value=4.7 Score=26.53 Aligned_cols=58 Identities=19% Similarity=0.248 Sum_probs=33.4
Q ss_pred eeecCeEEEEccCCCCccceeEEeEEccCC-e-------eeecCc--------C--CCceEEEcc---CccEEEEeEeee
Q psy5692 19 VILGNTAVLRCQIPSYMSEYIIVTSWIQDD-V-------NIYLNT--------D--TGGKYVVLS---SGDLYVQIRLSI 77 (98)
Q Consensus 19 VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-~-------~I~p~~--------~--~dgKY~vlp---sGeL~Ir~v~~~ 77 (98)
|-.|.++.|.|.+... .. ....|.+-+ . .++-.. + ..+||.+.. +..|.|.+++.+
T Consensus 3 v~~G~~vtL~C~~~~~-~~--~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~s 79 (104)
T cd05720 3 AELGQKVELKCEVLNS-SP--TGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKE 79 (104)
T ss_pred ccCCCeEEEEEEecCC-CC--CcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHH
Confidence 4579999999986433 22 235676654 2 111111 0 145777643 234888888876
Q ss_pred cC
Q psy5692 78 TG 79 (98)
Q Consensus 78 ~~ 79 (98)
|.
T Consensus 80 Ds 81 (104)
T cd05720 80 NE 81 (104)
T ss_pred HC
Confidence 64
No 146
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=80.27 E-value=10 Score=24.19 Aligned_cols=25 Identities=24% Similarity=0.452 Sum_probs=19.9
Q ss_pred EEEEccCCCCccceeEEeEEccCCeee
Q psy5692 25 AVLRCQIPSYMSEYIIVTSWIQDDVNI 51 (98)
Q Consensus 25 AVLkC~IPs~V~d~V~V~SW~~Dd~~I 51 (98)
+.|.|.+..|--. . ..+|.+++..|
T Consensus 2 ~~LtC~a~g~~P~-~-~ItW~k~g~~l 26 (83)
T cd07705 2 AKLRCTSSGSKPA-A-NIKWRKGDQEL 26 (83)
T ss_pred EEEEEEecCccCC-C-EeEEEECCEEC
Confidence 6899999877555 3 77999998665
No 147
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=80.20 E-value=5 Score=26.71 Aligned_cols=42 Identities=14% Similarity=0.388 Sum_probs=27.9
Q ss_pred ecCeEEEEccCCCCccceeEEeEEccCCeeeec-------CcCCCceEEE
Q psy5692 21 LGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYL-------NTDTGGKYVV 63 (98)
Q Consensus 21 rGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p-------~~~~dgKY~v 63 (98)
.|..++|.|++..|--.-|. ..|.+|+..+.. ..+.||.|.+
T Consensus 14 ~~~~~tL~C~a~gFyP~~I~-v~W~~~g~~~~~~~~~~~~~~~~Dgty~~ 62 (94)
T cd05767 14 LGEPNTLICFVDNFFPPVLN-VTWLKNGVPVTDGVSETRYYPRQDLSFQK 62 (94)
T ss_pred CCCCeEEEEEEEEEECCcCE-EEEEECCeEccCceEEeeeEeCCCCcEEE
Confidence 35568999999877665554 479999855422 1235677776
No 148
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=78.93 E-value=4.9 Score=27.10 Aligned_cols=60 Identities=15% Similarity=0.244 Sum_probs=35.1
Q ss_pred eeecCeEEEEccCCCCccceeEEeEEccCC---ee--e---ecC-------cCCCceEEEc--cCc---cEEEEeEeeec
Q psy5692 19 VILGNTAVLRCQIPSYMSEYIIVTSWIQDD---VN--I---YLN-------TDTGGKYVVL--SSG---DLYVQIRLSIT 78 (98)
Q Consensus 19 VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd---~~--I---~p~-------~~~dgKY~vl--psG---eL~Ir~v~~~~ 78 (98)
|-.|.+|.|.|.+...... -....|.+-. .. | +.. ....+||.+. ++. -|.|++++.+|
T Consensus 9 v~~G~~vtL~C~~~~~~~~-~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~D 87 (117)
T cd04981 9 VKPGQSLKLSCKASGFTFT-SYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSLTPED 87 (117)
T ss_pred EcCCCCEEEEEEEeCCCcc-cceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCCCHHH
Confidence 4589999999986422211 1225577654 11 1 211 1124788885 322 59999998887
Q ss_pred C
Q psy5692 79 G 79 (98)
Q Consensus 79 ~ 79 (98)
.
T Consensus 88 s 88 (117)
T cd04981 88 T 88 (117)
T ss_pred C
Confidence 4
No 149
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=78.52 E-value=5 Score=26.63 Aligned_cols=29 Identities=14% Similarity=0.424 Sum_probs=22.1
Q ss_pred ecCeEEEEccCCCCccceeEEeEEccCCee
Q psy5692 21 LGNTAVLRCQIPSYMSEYIIVTSWIQDDVN 50 (98)
Q Consensus 21 rGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~ 50 (98)
.++.++|.|.+-.|--.-+ ..+|.+|+..
T Consensus 15 ~~~~~~L~C~a~gFyP~~i-~vtW~k~g~~ 43 (95)
T cd04985 15 SSDSVTLGCLATGFLPEPV-TFTWNSGSNS 43 (95)
T ss_pred CCCcEEEEEEEeeEECCCc-EEEEeECCEE
Confidence 5677999999987766644 4579999853
No 150
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=77.12 E-value=2.4 Score=26.99 Aligned_cols=39 Identities=8% Similarity=0.063 Sum_probs=24.1
Q ss_pred EeEEccCCeeeecCcCCCceEEE------ccCccEEEEeEeeecC
Q psy5692 41 VTSWIQDDVNIYLNTDTGGKYVV------LSSGDLYVQIRLSITG 79 (98)
Q Consensus 41 V~SW~~Dd~~I~p~~~~dgKY~v------lpsGeL~Ir~v~~~~~ 79 (98)
-.+|++|+..|.++.....++.- ..+|.|.|.+++.+|.
T Consensus 14 ~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~ 58 (81)
T cd04971 14 TLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNN 58 (81)
T ss_pred cEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccC
Confidence 36899999887653211111111 2367899999988764
No 151
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=77.07 E-value=6.7 Score=25.94 Aligned_cols=30 Identities=27% Similarity=0.442 Sum_probs=22.2
Q ss_pred ecCeEEEEccCCCCccceeEEeEEccCCeee
Q psy5692 21 LGNTAVLRCQIPSYMSEYIIVTSWIQDDVNI 51 (98)
Q Consensus 21 rGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I 51 (98)
.++++.|.|.+..|-..-| -.+|.+|...+
T Consensus 13 ~~~~~~L~C~a~gFyP~~I-~vtW~~dg~~~ 42 (94)
T cd05847 13 TSETIQLLCLISGYTPGTI-EVEWLVDGQVA 42 (94)
T ss_pred CCCCEEEEEEEEeEECCCC-EEEEEECCEEC
Confidence 4577999999987766644 45799987543
No 152
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=77.05 E-value=8.6 Score=26.83 Aligned_cols=61 Identities=10% Similarity=0.091 Sum_probs=33.7
Q ss_pred ceeecCeEEEEccC-C-------CCccceeEEeEEccCCeeee-cC-cCCCceEEEccCccEEEEeEeeec
Q psy5692 18 NVILGNTAVLRCQI-P-------SYMSEYIIVTSWIQDDVNIY-LN-TDTGGKYVVLSSGDLYVQIRLSIT 78 (98)
Q Consensus 18 ~VirGNtAVLkC~I-P-------s~V~d~V~V~SW~~Dd~~I~-p~-~~~dgKY~vlpsGeL~Ir~v~~~~ 78 (98)
.|+.|.++.|+|-. + |.+++......|..+...+- |. .+.++.-+..-.+.|.|..+..+|
T Consensus 11 ~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~~Lwf~Pa~~eD 81 (104)
T cd05896 11 MVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEEDSIWFRPAELQD 81 (104)
T ss_pred EEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCCEEEEEeCChhh
Confidence 67899999999984 2 22245555678999952221 11 111111222235556666655554
No 153
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=76.68 E-value=5.5 Score=27.27 Aligned_cols=32 Identities=9% Similarity=0.035 Sum_probs=22.4
Q ss_pred CCCceEEEcc------CccEEEEeEeeecCCcceeeeeeh
Q psy5692 56 DTGGKYVVLS------SGDLYVQIRLSITGNLSVKKMKVE 89 (98)
Q Consensus 56 ~~dgKY~vlp------sGeL~Ir~v~~~~~n~~~~~~~~~ 89 (98)
...||..+.. +-.|.|+|++.+|. .+=.|++.
T Consensus 55 ~y~gRvsl~~~~~~~~~asL~i~nv~~~D~--G~Y~C~v~ 92 (110)
T cd05902 55 AFQGRVSLPGYPKNRYNASLVLSRLRYSDS--GTYRCEVV 92 (110)
T ss_pred hcccEEEeecCCCCCceEEEEECCCCHHHC--EEEEEEEE
Confidence 3567877753 44788999998886 55666654
No 154
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=76.19 E-value=17 Score=23.26 Aligned_cols=25 Identities=20% Similarity=0.457 Sum_probs=19.9
Q ss_pred EEEEccCCCCccceeEEeEEccCCeee
Q psy5692 25 AVLRCQIPSYMSEYIIVTSWIQDDVNI 51 (98)
Q Consensus 25 AVLkC~IPs~V~d~V~V~SW~~Dd~~I 51 (98)
+.|.|.+..|-.. ...+|.+++..+
T Consensus 2 ~~LtC~a~gf~P~--~~itW~kng~~l 26 (83)
T cd05884 2 MQLTCKTSGSKPA--ADIRWFKNDKEI 26 (83)
T ss_pred EEEEEEeCCccCC--CEEEEEECCEEC
Confidence 5799999887765 556999999665
No 155
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=74.93 E-value=3.8 Score=27.53 Aligned_cols=59 Identities=15% Similarity=0.204 Sum_probs=38.4
Q ss_pred ceeecCeEEEEcc-CCCCcccee-EEeEEccCCeeeecCcCCCceEEEc-cCccEEEEeEeeecC
Q psy5692 18 NVILGNTAVLRCQ-IPSYMSEYI-IVTSWIQDDVNIYLNTDTGGKYVVL-SSGDLYVQIRLSITG 79 (98)
Q Consensus 18 ~VirGNtAVLkC~-IPs~V~d~V-~V~SW~~Dd~~I~p~~~~dgKY~vl-psGeL~Ir~v~~~~~ 79 (98)
.+..|.+..|.|- +-.|..... .-..|..|...|.. .+.+|..+ .++-|.|++|..+|.
T Consensus 6 ~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~---~~~~~~~~~~~~~L~I~~v~~~D~ 67 (95)
T cd05897 6 ILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDK---DNEKFYSLKGSTYLHIIDVSLNDS 67 (95)
T ss_pred EeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcC---CCcceEecCCCCEEEEEEcChhhC
Confidence 4567899999996 122221222 24789999966531 23456663 356899999998876
No 156
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=73.80 E-value=7.3 Score=24.28 Aligned_cols=44 Identities=23% Similarity=0.596 Sum_probs=29.7
Q ss_pred ecCeEEEEccCCCCccceeEEeEEccCCeeeec------Cc-CCCceEEEcc
Q psy5692 21 LGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYL------NT-DTGGKYVVLS 65 (98)
Q Consensus 21 rGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p------~~-~~dgKY~vlp 65 (98)
.|+++.|.|.+..|--.-+ -.+|..++..+.. .. +.||.|.+..
T Consensus 7 ~~~~~~L~C~v~~f~P~~i-~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s 57 (83)
T PF07654_consen 7 LGGSVTLTCLVSGFYPKDI-TVTWLKNGKEVTEGVETTPPPPNSDGTYSVTS 57 (83)
T ss_dssp STSEEEEEEEEEEEBSSTE-EEEEEETTEEETTTEEEEEEEEETTSEEEEEE
T ss_pred CCCCEEEEEEEEEEECCCc-EEEEEeccceeeeeeeecccccccccceeeeE
Confidence 4899999999986665555 4579998855421 11 4577777643
No 157
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=73.67 E-value=20 Score=22.95 Aligned_cols=27 Identities=19% Similarity=0.555 Sum_probs=19.9
Q ss_pred cCeEEEEccCCCCccceeEEeEEccCCe
Q psy5692 22 GNTAVLRCQIPSYMSEYIIVTSWIQDDV 49 (98)
Q Consensus 22 GNtAVLkC~IPs~V~d~V~V~SW~~Dd~ 49 (98)
|+.+.|.|.+..|--.= ....|.++..
T Consensus 14 ~~~~~L~C~a~gF~P~~-i~v~W~~~g~ 40 (93)
T cd07698 14 DGSLTLSCHATGFYPRD-IEVTWLRDGE 40 (93)
T ss_pred CCcEEEEEEEEEEeCCC-cEEEEEECCE
Confidence 78899999998653332 3568999873
No 158
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=72.44 E-value=14 Score=24.72 Aligned_cols=56 Identities=16% Similarity=0.176 Sum_probs=34.5
Q ss_pred eEEEEccCCCC-ccceeEEeEEccC----C--eeeecCc-------CCCceEEEcc----CccEEEEeEeeecC
Q psy5692 24 TAVLRCQIPSY-MSEYIIVTSWIQD----D--VNIYLNT-------DTGGKYVVLS----SGDLYVQIRLSITG 79 (98)
Q Consensus 24 tAVLkC~IPs~-V~d~V~V~SW~~D----d--~~I~p~~-------~~dgKY~vlp----sGeL~Ir~v~~~~~ 79 (98)
.|.|.|.+.+. ...-+.-.+|... . ..+|... ...||-.... ++.|.|+|++.+|+
T Consensus 2 ~v~L~C~f~~~~~~~~~~~V~W~k~~~~~~~~va~y~~~~g~~~~~~f~~Rv~f~~~~~~daSi~i~nl~~~D~ 75 (99)
T cd05886 2 DVVLHCSFINPLPPVKITQVTWQKLTNGSKQNVAIYNPSMGVSVLPPYRERVTFKNPSFEDGTISLSRLELEDE 75 (99)
T ss_pred cEEEEeEeecCCCCCCeEEEEEEECCCCCceEEEEECCcCCcccCccccCcEEEcCCCCCcceEEEcCCccccC
Confidence 48999999743 2334455678764 1 2234311 2346666552 48899999998885
No 159
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=71.20 E-value=13 Score=25.83 Aligned_cols=30 Identities=17% Similarity=0.382 Sum_probs=22.7
Q ss_pred ecCeEEEEccCCCCccceeEEeEEccCCeee
Q psy5692 21 LGNTAVLRCQIPSYMSEYIIVTSWIQDDVNI 51 (98)
Q Consensus 21 rGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I 51 (98)
.++.++|.|++..|--.- .-.+|.+++..+
T Consensus 17 ~~~~~tL~Cla~gFyP~~-I~V~W~kng~~l 46 (115)
T cd05769 17 NKRKATLVCLATGFYPDH-VSLSWKVNGKEV 46 (115)
T ss_pred cCCCcEEEEEEEeEeCCC-cEEEEEECCEEC
Confidence 467899999998766654 456899998554
No 160
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=70.86 E-value=4.3 Score=23.15 Aligned_cols=56 Identities=11% Similarity=0.054 Sum_probs=35.0
Q ss_pred EEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecCCcceeeeee
Q psy5692 25 AVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITGNLSVKKMKV 88 (98)
Q Consensus 25 AVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~n~~~~~~~~ 88 (98)
..|.|.++.+-. -...+|......... .....-..++.|.|.++...|... -.|.+
T Consensus 18 ~~l~C~~~~~~~--~~~~~W~~~~~~~~~----~~~~~~~~~~~L~i~~v~~~~~g~--y~C~a 73 (75)
T PF13927_consen 18 VTLTCSAEGGPP--PPSISWYDSNPSFNS----NSRGSSSSNSTLTISNVTRSDNGT--YTCIA 73 (75)
T ss_dssp EEEEEEESSEES--SEEEEEETEEEEEEE----EEEEEEEEEEEEEESSCCGGGTEE--EEEEE
T ss_pred EEEEEEEccccC--CeEEEEEecCCceee----eeeeccceeeEEEEccCCHHhCcE--EEEEE
Confidence 999999886554 566788822222222 344455567889998887666544 55543
No 161
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=69.30 E-value=7.6 Score=24.71 Aligned_cols=57 Identities=14% Similarity=0.081 Sum_probs=29.7
Q ss_pred cCeEEEEccCCCCccceeEEeEEccCCeee-ecCcCCCceEEE----ccCccEEEEeEeeecC
Q psy5692 22 GNTAVLRCQIPSYMSEYIIVTSWIQDDVNI-YLNTDTGGKYVV----LSSGDLYVQIRLSITG 79 (98)
Q Consensus 22 GNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I-~p~~~~dgKY~v----lpsGeL~Ir~v~~~~~ 79 (98)
|-+++|.|.+...+... .-..|...+..+ ........|... .-++.|.|.+++..|.
T Consensus 1 Ge~~~L~C~~~~~~~~~-~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~Ds 62 (86)
T cd05862 1 GEKLVLNCTARTELNVG-IDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDL 62 (86)
T ss_pred CCcEEEEEEEEeCCCCc-EEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccC
Confidence 67899999975322222 234786655221 110001111111 1256899998887764
No 162
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=67.03 E-value=4.6 Score=25.11 Aligned_cols=45 Identities=11% Similarity=0.122 Sum_probs=28.7
Q ss_pred EEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecC
Q psy5692 26 VLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITG 79 (98)
Q Consensus 26 VLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~ 79 (98)
.|.|.+-.+-.-. .+|.+++..|.+ +.++ ...+.|.|.++..+|.
T Consensus 2 ~~~c~v~G~P~P~---v~W~k~g~~l~~----~~~~--~~~~~L~I~~v~~~D~ 46 (70)
T cd05864 2 KIPVKYYGYPPPE---VKWYKNGQLIVL----NHTF--KRGVHLTIYEVTEKDA 46 (70)
T ss_pred EEEeEEEEeCCCE---EEEEECCEECCC----CCEE--ccCCEEEECcCCHHHC
Confidence 4677764333332 589999977743 2333 3456799999888774
No 163
>KOG4222|consensus
Probab=66.54 E-value=6.1 Score=37.99 Aligned_cols=67 Identities=15% Similarity=0.284 Sum_probs=51.1
Q ss_pred eEEEEeeeeceeecCeEEEEccCCCCccceeEEeEEccCC-ee-eec--CcCCCceEEEccCccEEEEeEeeecC
Q psy5692 9 YEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-VN-IYL--NTDTGGKYVVLSSGDLYVQIRLSITG 79 (98)
Q Consensus 9 Yev~V~d~~~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-~~-I~p--~~~~dgKY~vlpsGeL~Ir~v~~~~~ 79 (98)
+-.+.-++ .|..|-++.|-|..++-- .--+-|..+. .. +|+ .-...+|..|-|+|.|+|.+++..|.
T Consensus 318 f~kkp~dq-~v~lg~~vt~pc~~~gnP---~PavfW~keg~q~llf~~~p~~~~~r~svs~~g~L~it~v~~~d~ 388 (1281)
T KOG4222|consen 318 FGKKPRDQ-KVALGGTVTFPCETLGNP---PPAVFWLKEGSQDLLFSASPPSSNGRGSVSPTGTLTITNVRQSDE 388 (1281)
T ss_pred cccccCcc-ccccCceEEeeeecCCCC---CcceEEeccCcceecccCCCCCcCccceecCCCCccccccccccc
Confidence 44556677 888999999999986533 3456799998 33 353 23458999999999999999998774
No 164
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=66.38 E-value=6.9 Score=24.66 Aligned_cols=59 Identities=14% Similarity=0.103 Sum_probs=30.7
Q ss_pred cCeEEEEccCCCCccceeEEeEEccCCee---eecCcCCCceEEEcc---CccEEEEeEeeecCCcceeeeee
Q psy5692 22 GNTAVLRCQIPSYMSEYIIVTSWIQDDVN---IYLNTDTGGKYVVLS---SGDLYVQIRLSITGNLSVKKMKV 88 (98)
Q Consensus 22 GNtAVLkC~IPs~V~d~V~V~SW~~Dd~~---I~p~~~~dgKY~vlp---sGeL~Ir~v~~~~~n~~~~~~~~ 88 (98)
|.+++|.|.+... .++ -..|...... ..|. ..+..+.. +.-|+|.+++.+| +..=.|-+
T Consensus 1 Ge~~~l~C~~~~~--~~~-~~~W~~~~~~~~~~~~~---~~~~~~~~~~~~s~L~I~~~~~~D--sG~Y~C~a 65 (84)
T cd05861 1 GETITVNCIVQGN--EVV-DFSWTYPGKDIGKGIPE---VEEVKVPATTLRSTLTFPHATVED--SGTYECAA 65 (84)
T ss_pred CCcEEEEEEEECC--Ccc-EEEEEECCccCCCCceE---EEEEecCCcEEEEEEEECCCCcCC--CEEEEEEE
Confidence 7789999997542 222 2468754321 1121 01122211 3468888887777 33444444
No 165
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=66.21 E-value=4.6 Score=25.15 Aligned_cols=42 Identities=17% Similarity=0.186 Sum_probs=27.7
Q ss_pred EEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecC
Q psy5692 26 VLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITG 79 (98)
Q Consensus 26 VLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~ 79 (98)
.|.|.+-.+-.- ..+|++|+..|-.. ...+.|.|+++..+|.
T Consensus 2 ~l~c~v~g~P~P---~v~W~kdg~~l~~~---------~~~~~L~i~~v~~~D~ 43 (67)
T cd05863 2 KLPVKVAAYPPP---EFQWYKDGKLISGK---------HSQHSLQIKDVTEASA 43 (67)
T ss_pred EEEEEEEEeCCC---EEEEEECCEECccc---------CCcCEEEECCCCHHHC
Confidence 478887555444 47899999776321 1245788888777664
No 166
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=66.20 E-value=31 Score=21.92 Aligned_cols=49 Identities=16% Similarity=-0.004 Sum_probs=30.7
Q ss_pred ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEe
Q psy5692 18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRL 75 (98)
Q Consensus 18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~ 75 (98)
.|..|.+|.|.|.+--. ..-.-.+|.+|+..|-+ ++... .+.|-|.++.
T Consensus 9 ~v~~G~~v~l~C~a~G~--P~P~~I~W~k~g~~l~~------~~~~~-~s~L~i~~~~ 57 (81)
T cd05749 9 SVTANTPFNLTCQAVGP--PEPVEILWWQGGSPLGD------PPAPS-PSVLNVPGLN 57 (81)
T ss_pred EEcCCCCEEEEEEeeee--cCCeEEEEEECCEECCC------CCCCC-CCEEEEcccc
Confidence 67899999999996311 11223789999966532 12222 2467777664
No 167
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=64.00 E-value=8.8 Score=20.18 Aligned_cols=20 Identities=40% Similarity=0.567 Sum_probs=14.4
Q ss_pred EEccCccEEEEeEeeecCCcceee
Q psy5692 62 VVLSSGDLYVQIRLSITGNLSVKK 85 (98)
Q Consensus 62 ~vlpsGeL~Ir~v~~~~~n~~~~~ 85 (98)
-+.++|+|||.| .+|..+.+
T Consensus 8 av~~~g~i~VaD----~~n~rV~v 27 (28)
T PF01436_consen 8 AVDSDGNIYVAD----SGNHRVQV 27 (28)
T ss_dssp EEETTSEEEEEE----CCCTEEEE
T ss_pred EEeCCCCEEEEE----CCCCEEEE
Confidence 345899999977 56666654
No 168
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=63.38 E-value=6.2 Score=20.66 Aligned_cols=60 Identities=8% Similarity=0.051 Sum_probs=33.7
Q ss_pred EEEEccCCCCccceeEEeEEccCCeeeecCcC---CCceEEEccCccEEEEeEeeecCCcceeeeeeh
Q psy5692 25 AVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTD---TGGKYVVLSSGDLYVQIRLSITGNLSVKKMKVE 89 (98)
Q Consensus 25 AVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~---~dgKY~vlpsGeL~Ir~v~~~~~n~~~~~~~~~ 89 (98)
+.|.|.++. .-.....|........+... .........+..|.|.++...|+. .-.|.+.
T Consensus 1 ~~l~C~~~~---~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g--~y~C~~~ 63 (74)
T cd00096 1 VTLTCLASG---PPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSG--TYTCVAS 63 (74)
T ss_pred CEEEEEecC---CCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCc--EEEEEEe
Confidence 468899875 34456678887744433211 122333445666777777765553 4555543
No 169
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=62.24 E-value=27 Score=22.81 Aligned_cols=59 Identities=14% Similarity=0.205 Sum_probs=33.1
Q ss_pred EEEEccCCCCccceeEEeEEccCCeeeecCc--C-CCceEEEccCccEEEEeEeeecCCcceeeeeeh
Q psy5692 25 AVLRCQIPSYMSEYIIVTSWIQDDVNIYLNT--D-TGGKYVVLSSGDLYVQIRLSITGNLSVKKMKVE 89 (98)
Q Consensus 25 AVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~--~-~dgKY~vlpsGeL~Ir~v~~~~~n~~~~~~~~~ 89 (98)
+.|.|..+.. -=.+...|++|+..|-... . .++.|.+ +|.|.+.=+.. .|.....|...
T Consensus 2 ~~L~C~s~~s--kP~a~i~W~k~~~~l~~~~~~~~~~~~~t~--~s~L~~~~~~~--Ddg~~~~C~A~ 63 (80)
T cd05885 2 VELTCLSPRS--KPAATLRWYRDRKELKGVISQQENGKTVSV--SNTIRFPVDRK--DDGAILSCEAS 63 (80)
T ss_pred EEEEEeCCCc--cCCCeEEEEECCEECCCCcccccCCceEEE--EEEEEEEeeec--cCCcEEEEEEE
Confidence 6789986322 1235678999997773311 1 2344553 66677644333 34455666554
No 170
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=61.93 E-value=14 Score=25.16 Aligned_cols=35 Identities=11% Similarity=0.214 Sum_probs=26.4
Q ss_pred ceeecCeEEEEccCCCCccceeE-EeEEccCCeeeec
Q psy5692 18 NVILGNTAVLRCQIPSYMSEYII-VTSWIQDDVNIYL 53 (98)
Q Consensus 18 ~VirGNtAVLkC~IPs~V~d~V~-V~SW~~Dd~~I~p 53 (98)
.+..|+...|+|.++ -++-.-. ...|++++..|..
T Consensus 12 ~~~eG~~~tL~C~v~-g~~P~a~L~i~W~rG~~~l~~ 47 (100)
T cd05755 12 WQPVGKNYTLQCDVP-GVAPRQNLTVVLLRGNETLSR 47 (100)
T ss_pred cccCCCcEEEEEEEc-CcCCCCcEEEEEeeCCEEccc
Confidence 678999999999975 3444444 4689999977743
No 171
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=60.83 E-value=46 Score=23.40 Aligned_cols=66 Identities=20% Similarity=0.288 Sum_probs=40.0
Q ss_pred cCeEEEEccCCC---------CccceeEE-eEEc------cC--Ceee--ec------CcCCCceEEEcc------CccE
Q psy5692 22 GNTAVLRCQIPS---------YMSEYIIV-TSWI------QD--DVNI--YL------NTDTGGKYVVLS------SGDL 69 (98)
Q Consensus 22 GNtAVLkC~IPs---------~V~d~V~V-~SW~------~D--d~~I--~p------~~~~dgKY~vlp------sGeL 69 (98)
|.+++|-|++.. .-+++..+ |+.+ .+ +..+ |- ..++.||-.++. +..|
T Consensus 2 ~g~v~LPC~f~~~p~~p~~~~~~~~~~rIkW~~~~~~~~g~~~~e~~Vlv~~~g~~~~~~~y~gRv~l~~~~~~~g~asL 81 (117)
T cd05901 2 SGSVVLPCRFSTLPTLPPSVITTSEFLRIKWTKIEVDKNGKDHKETTVLVAQNGIIKIGQEYMGRVSVPSHPEDQGDASL 81 (117)
T ss_pred CCCEEEeeEEEecCCCCCcccCCCCCcEEEEEEecccccccCCCccEEEEEECCEEEECCcccCcEEeeccCCcCCceEE
Confidence 678999999841 13344444 4444 11 2222 22 235678888752 5779
Q ss_pred EEEeEeeecCCcceeeeeeh
Q psy5692 70 YVQIRLSITGNLSVKKMKVE 89 (98)
Q Consensus 70 ~Ir~v~~~~~n~~~~~~~~~ 89 (98)
.|++++..|. -.-.|+|.
T Consensus 82 ~i~~v~~sD~--G~Y~C~V~ 99 (117)
T cd05901 82 TIVKLRASDA--GVYRCEVM 99 (117)
T ss_pred EEcccccccC--EEEEEEEE
Confidence 9999999987 45566654
No 172
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=59.44 E-value=48 Score=22.40 Aligned_cols=27 Identities=19% Similarity=0.521 Sum_probs=19.9
Q ss_pred ecCeEEEEccCCCCccceeEEeEEccCC
Q psy5692 21 LGNTAVLRCQIPSYMSEYIIVTSWIQDD 48 (98)
Q Consensus 21 rGNtAVLkC~IPs~V~d~V~V~SW~~Dd 48 (98)
.|+.+.|.|.+..|-.. -.-.+|.+++
T Consensus 52 ~~~~~~L~C~a~g~~P~-~~~i~W~~~g 78 (139)
T cd05771 52 IEEPQTLICHIAGYYPL-DVQVEWTREP 78 (139)
T ss_pred cCCcEEEEEEECCCCCC-CeEEEEEECC
Confidence 68999999999855221 1457999986
No 173
>PHA03376 BARF1; Provisional
Probab=58.60 E-value=51 Score=26.20 Aligned_cols=61 Identities=18% Similarity=0.085 Sum_probs=41.5
Q ss_pred eeecCeEEEEccCCCCccceeEEeEEcc----CC-eeeecCc--------CCCceEEEcc---CccEEEEeEeeecC
Q psy5692 19 VILGNTAVLRCQIPSYMSEYIIVTSWIQ----DD-VNIYLNT--------DTGGKYVVLS---SGDLYVQIRLSITG 79 (98)
Q Consensus 19 VirGNtAVLkC~IPs~V~d~V~V~SW~~----Dd-~~I~p~~--------~~dgKY~vlp---sGeL~Ir~v~~~~~ 79 (98)
+.-|-.|+|.|...+...+--....|.+ ++ +.++-.. ...|++.+.. +=-|-|.+++..|.
T Consensus 23 a~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDd 99 (221)
T PHA03376 23 AFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD 99 (221)
T ss_pred heeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCC
Confidence 4578899999998655555777789999 45 6665422 3467777742 33577777776653
No 174
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=56.66 E-value=9 Score=24.73 Aligned_cols=43 Identities=7% Similarity=0.140 Sum_probs=26.0
Q ss_pred EeEEccCCeeeecCcCCCceE----E-E---ccCccEEEEeEeeecCCcceeeeeeh
Q psy5692 41 VTSWIQDDVNIYLNTDTGGKY----V-V---LSSGDLYVQIRLSITGNLSVKKMKVE 89 (98)
Q Consensus 41 V~SW~~Dd~~I~p~~~~dgKY----~-v---lpsGeL~Ir~v~~~~~n~~~~~~~~~ 89 (98)
..+|++|+..|.+ +.+. + + .-+|.|.|.++..+|. -.-+|..+
T Consensus 14 ti~W~kng~~l~~----~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~--G~YtC~A~ 64 (79)
T cd05855 14 TLQWFHEGAILNE----SEYICTKIHVINNTEYHGCLQLDNPTHLNN--GIYTLVAK 64 (79)
T ss_pred ceEEEECCEECCC----CcceeeeeEeecccceEEEEEECCCCcccC--EEEEEEEE
Confidence 4689999987743 1221 1 1 2357889998888664 33455443
No 175
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=56.07 E-value=29 Score=24.12 Aligned_cols=33 Identities=12% Similarity=0.361 Sum_probs=22.3
Q ss_pred eceeecCeEEEEccCCC-CccceeEEeEEccCCee
Q psy5692 17 HNVILGNTAVLRCQIPS-YMSEYIIVTSWIQDDVN 50 (98)
Q Consensus 17 ~~VirGNtAVLkC~IPs-~V~d~V~V~SW~~Dd~~ 50 (98)
+.+..|+..+++|.+|. +-.+...|.-| +++..
T Consensus 10 ~~l~~G~~vtv~C~v~~v~P~~~l~v~Ll-kG~~~ 43 (99)
T cd07689 10 GPLEEGKPVTVKCEVPDVYPFDRLEIELL-KGETL 43 (99)
T ss_pred CcccCCceEEEEEEecCcccCCceEEEEe-cCcce
Confidence 36678999999999862 33345666665 55433
No 176
>PF11025 GP40: Glycoprotein GP40 of Cryptosporidium; InterPro: IPR021035 This entry represents proteins that are highly conserved in Cryptosporidium spp. Many members are annotated as being a 60 kDa glycoprotein.
Probab=49.51 E-value=32 Score=26.12 Aligned_cols=51 Identities=27% Similarity=0.436 Sum_probs=35.5
Q ss_pred CeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecCCcceeeeeehHH
Q psy5692 23 NTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITGNLSVKKMKVEEE 91 (98)
Q Consensus 23 NtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~n~~~~~~~~~~~ 91 (98)
-.|+|||- ||..|.+=..|... ..-||+ |||. .+|.-+. +++-.|+||...
T Consensus 21 pvaTlkcg------~YTiVyAP~k~~t~------PaPrYI---SGev--~~VtFek-sd~TvkIkvd~k 71 (165)
T PF11025_consen 21 PVATLKCG------DYTIVYAPEKDQTD------PAPRYI---SGEV--KSVTFEK-SDSTVKIKVDGK 71 (165)
T ss_pred ceEEEecC------CEEEEEccccCCCC------CCCcee---ecce--EEEEEec-cCCeEEEEECCe
Confidence 46899998 89988887776543 244776 5664 4555555 777888888654
No 177
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=49.33 E-value=23 Score=30.79 Aligned_cols=39 Identities=26% Similarity=0.354 Sum_probs=23.8
Q ss_pred CCceEEEcc---CccEEEEeEeeecCCcceeeeeehHHHHhhh
Q psy5692 57 TGGKYVVLS---SGDLYVQIRLSITGNLSVKKMKVEEEEEKKK 96 (98)
Q Consensus 57 ~dgKY~vlp---sGeL~Ir~v~~~~~n~~~~~~~~~~~~~~~~ 96 (98)
.+.||+++| |+-.||-++...-....+.|+ ||-||-.+|
T Consensus 85 ~~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~Kv-Ie~~ev~~k 126 (461)
T PF05694_consen 85 KERRYLILPGLRSSRIYVIDTKTDPRKPRLHKV-IEPEEVFEK 126 (461)
T ss_dssp --S-EEEEEBTTT--EEEEE--S-TTS-EEEEE-E-HHHHHHH
T ss_pred ccCCcEEeeeeccCcEEEEECCCCCCCCceEee-eCHHHHHhh
Confidence 368999998 899999999988889999887 676665544
No 178
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=49.02 E-value=40 Score=26.06 Aligned_cols=59 Identities=14% Similarity=0.191 Sum_probs=35.2
Q ss_pred ceeecCeEEEEccCC-CCccceeEEeEEccCCeee--ecCc------CCCceEEE-cc---CccEEEEeEeeecC
Q psy5692 18 NVILGNTAVLRCQIP-SYMSEYIIVTSWIQDDVNI--YLNT------DTGGKYVV-LS---SGDLYVQIRLSITG 79 (98)
Q Consensus 18 ~VirGNtAVLkC~IP-s~V~d~V~V~SW~~Dd~~I--~p~~------~~dgKY~v-lp---sGeL~Ir~v~~~~~ 79 (98)
.|-.|..|.|.|..+ ++ -.....|.+....| |-.. +.-+|..+ .| +-.|.|++|..+|+
T Consensus 26 ~V~ege~VtLsCs~t~s~---~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDe 97 (189)
T PHA02987 26 TVSEHVNVKISCNKTSSF---NSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDN 97 (189)
T ss_pred EEcCCCCEEEEEecCCCC---ccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhC
Confidence 345899999999985 33 23336698875222 2211 11246653 22 55688888887774
No 179
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=46.33 E-value=47 Score=21.48 Aligned_cols=26 Identities=23% Similarity=0.464 Sum_probs=18.5
Q ss_pred ceeecCeEEEEccCCCCccceeEEeEEccCCe
Q psy5692 18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDV 49 (98)
Q Consensus 18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~ 49 (98)
.-|.|.+.+|.|- +. .+. .-|.+++.
T Consensus 3 VsisGTtVtlTCP--~~-~~~---i~W~~n~~ 28 (65)
T cd07692 3 VSISGTTVTVTCP--LS-GDD---IKWKKNDQ 28 (65)
T ss_pred EEEeccEEEEECC--CC-CCC---ceEEeCCc
Confidence 3489999999995 22 122 78999873
No 180
>PF11101 DUF2884: Protein of unknown function (DUF2884); InterPro: IPR021307 Some members in this bacterial family of proteins are annotated as YggN which currently has no known function.
Probab=44.95 E-value=25 Score=26.98 Aligned_cols=16 Identities=25% Similarity=0.530 Sum_probs=14.0
Q ss_pred Cc-eEEEccCccEEEEe
Q psy5692 58 GG-KYVVLSSGDLYVQI 73 (98)
Q Consensus 58 dg-KY~vlpsGeL~Ir~ 73 (98)
+| ++.+.|+|+|+|..
T Consensus 22 ~~~~~~I~~~g~L~i~G 38 (229)
T PF11101_consen 22 SGEKLRIDPDGNLFING 38 (229)
T ss_pred CCceEEEcCCCcEEECC
Confidence 45 99999999999965
No 181
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=44.52 E-value=22 Score=29.02 Aligned_cols=35 Identities=9% Similarity=0.039 Sum_probs=25.8
Q ss_pred eEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecC
Q psy5692 42 TSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITG 79 (98)
Q Consensus 42 ~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~ 79 (98)
-.|+.++..+.. +-++.-+.++|+|.+.|.+..+-
T Consensus 15 y~W~GP~g~~l~---gn~~~nIT~TG~L~~~~F~esmS 49 (271)
T PF07354_consen 15 YLWTGPNGKPLS---GNSYVNITETGKLMFKNFQESMS 49 (271)
T ss_pred eEEECCCCcccC---CCCeEEEccCceEEeeccccccC
Confidence 369998843333 34678889999999999887653
No 182
>PHA03052 Hypothetical protein; Provisional
Probab=41.06 E-value=55 Score=21.74 Aligned_cols=45 Identities=16% Similarity=0.298 Sum_probs=31.0
Q ss_pred eeecCeEEEEccCCCCccceeEEeEEccCCeee-ecCcCCCceEEE
Q psy5692 19 VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNI-YLNTDTGGKYVV 63 (98)
Q Consensus 19 VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I-~p~~~~dgKY~v 63 (98)
+-.|..+.|.|.+.---.-..+..-|..-++.| +-..+++||-..
T Consensus 9 ~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~e~~d~~g~gRI~~ 54 (69)
T PHA03052 9 TSLGSNLTITCKVSLRPPTTDADVFWISNGMYYEEDDDDGDGRISI 54 (69)
T ss_pred EEccCCceEeEEEEecCCCcceEEEEEeCCcEEeccccCCCcceEe
Confidence 348999999999743333448889999988766 333345677544
No 183
>PF02107 FlgH: Flagellar L-ring protein; InterPro: IPR000527 The flgH, flgI and fliF genes of Salmonella typhimurium encode the major proteins for the L, P and M rings of the flagellar basal body []. In fact, the basal body consists of four rings (L,P,S and M) surrounding the flagellar rod, which is believed to transmit motor rotation to the filament []. The M ring is integral to the inner membrane of the cell, and may be connected to the rod via the S (supramembrane) ring, which lies just distal to it. The L and P rings reside in the outer membrane and periplasmic space, respectively. FlgH and FlgI, which are exported across the cell membrane to their destinations in the outer membrane and periplasmic space, have typical N-terminal cleaved signal-peptide sequences. FlgH is predicted to have an extensive beta-sheet structure, in keeping with other outer membrane proteins [].; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0009427 bacterial-type flagellum basal body, distal rod, L ring
Probab=40.49 E-value=37 Score=25.22 Aligned_cols=27 Identities=22% Similarity=0.272 Sum_probs=21.1
Q ss_pred EEccCccEEEEeEeeecCCcceeeeee
Q psy5692 62 VVLSSGDLYVQIRLSITGNLSVKKMKV 88 (98)
Q Consensus 62 ~vlpsGeL~Ir~v~~~~~n~~~~~~~~ 88 (98)
-|||+|-|.|+..+.+.=|.....+.+
T Consensus 102 ~VlpNGnL~I~G~k~i~vn~e~~~i~l 128 (179)
T PF02107_consen 102 EVLPNGNLVIEGEKQIRVNGEEQYIRL 128 (179)
T ss_pred EECCCCcEEEEEEEEEEECCCEEEEEE
Confidence 468999999999888887776655544
No 184
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=40.34 E-value=68 Score=24.56 Aligned_cols=26 Identities=27% Similarity=0.673 Sum_probs=18.6
Q ss_pred cCeEEE----EccCCCCccceeEEeEEccC
Q psy5692 22 GNTAVL----RCQIPSYMSEYIIVTSWIQD 47 (98)
Q Consensus 22 GNtAVL----kC~IPs~V~d~V~V~SW~~D 47 (98)
+|+.++ +|-.|-.-+||+...+|.+|
T Consensus 93 ~~tdi~~y~~~~~~P~~~RD~v~~R~w~~~ 122 (205)
T cd08909 93 KQTEVYQYVLNCMAPHPSRDFVVLRSWRTD 122 (205)
T ss_pred CCcEEEEEEeecCCCCCCCEEEEEEEEEEe
Confidence 455544 45556668999999999655
No 185
>PF06092 DUF943: Enterobacterial putative membrane protein (DUF943); InterPro: IPR010351 This family consists of several hypothetical proteins from Escherichia coli, Yersinia pestis and Salmonella typhi.
Probab=39.57 E-value=56 Score=24.49 Aligned_cols=33 Identities=6% Similarity=0.161 Sum_probs=26.3
Q ss_pred cceeEEeEEccCCeeeecCcCCCceEEEccCccEE
Q psy5692 36 SEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLY 70 (98)
Q Consensus 36 ~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~ 70 (98)
++.+....|.+++...|.. +++.|...|+|+|-
T Consensus 120 Kn~lm~V~~~~~~~~~f~~--~~~~Y~~~~~G~i~ 152 (157)
T PF06092_consen 120 KNILMSVRKSKNGYTYFSF--DDSSYQQTPDGKII 152 (157)
T ss_pred CCeEEEEEEcCCCcEEEEe--cCCEEEECCCCCEE
Confidence 5889999999998554432 58899999999973
No 186
>PF10411 DsbC_N: Disulfide bond isomerase protein N-terminus; InterPro: IPR018950 This is the N-terminal domain of the disulphide bond isomerase DsbC. The whole molecule is V-shaped, where each arm is a DsbC monomer of two domains linked by a hinge; and the N-termini of each monomer join to form the dimer interface at the base of the V, so are vital for dimerisation []. DsbC is required for disulphide bond formation and functions as a disulphide bond isomerase during oxidative protein-folding in bacterial periplasm. It also has chaperone activity []. ; PDB: 1EEJ_B 2IYJ_A 1TJD_A 1JZD_B 1JZO_A 1G0T_B 1T3B_A.
Probab=36.95 E-value=66 Score=19.51 Aligned_cols=32 Identities=25% Similarity=0.511 Sum_probs=18.6
Q ss_pred CCccceeEEeEEccCCeeeecCcCCCceEEEccCccEE
Q psy5692 33 SYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLY 70 (98)
Q Consensus 33 s~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~ 70 (98)
+-+...-.|.. .+...+|-+ .+|+|++. |+|+
T Consensus 20 spi~GlyeV~~--~~~~i~Y~~--~dg~yli~--G~l~ 51 (57)
T PF10411_consen 20 SPIPGLYEVVL--KGGGILYVD--EDGRYLIQ--GQLY 51 (57)
T ss_dssp -SSTTEEEEEE---TTEEEEEE--TTSSEEEE--S-EE
T ss_pred CCCCCeEEEEE--CCCeEEEEc--CCCCEEEE--eEEE
Confidence 33567777776 344444432 48899995 8876
No 187
>PF11996 DUF3491: Protein of unknown function (DUF3491); InterPro: IPR021882 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 286 to 3225 amino acids in length. This protein is found associated with PF04488 from PFAM. This protein is found associated with PF04488 from PFAM.
Probab=36.77 E-value=46 Score=31.44 Aligned_cols=52 Identities=29% Similarity=0.310 Sum_probs=34.8
Q ss_pred CeEEEEccCCC---CccceeEEeEEccCC--eee-ecC-cCCCceEEEccC-ccEEEEeE
Q psy5692 23 NTAVLRCQIPS---YMSEYIIVTSWIQDD--VNI-YLN-TDTGGKYVVLSS-GDLYVQIR 74 (98)
Q Consensus 23 NtAVLkC~IPs---~V~d~V~V~SW~~Dd--~~I-~p~-~~~dgKY~vlps-GeL~Ir~v 74 (98)
|.|+|.-.|.+ .+..+.+...|+.|+ ... +|. +..+.-|.+.|. |||||.-+
T Consensus 724 ~l~v~tyti~~k~~~~~~~~~~~~~~~d~~~~~Y~lP~~t~~~~~YyLdp~sGDLyiT~~ 783 (936)
T PF11996_consen 724 NLAVLTYTIDPKNDSTSEGPSFHLWFIDKLMKEYRLPLPTKAESSYYLDPVSGDLYITRI 783 (936)
T ss_pred ceEEEEEEecccccccccccccccccccchhhhccccccccccceEEecCCCCcEEEEEE
Confidence 56666666532 234466778899987 222 453 445788999996 99999874
No 188
>PRK10626 hypothetical protein; Provisional
Probab=36.40 E-value=33 Score=27.37 Aligned_cols=25 Identities=16% Similarity=0.240 Sum_probs=18.0
Q ss_pred CceEEEccCccEEEEeEeeecCCcce
Q psy5692 58 GGKYVVLSSGDLYVQIRLSITGNLSV 83 (98)
Q Consensus 58 dgKY~vlpsGeL~Ir~v~~~~~n~~~ 83 (98)
.|+|.+.|+|.|||.. +..+=|+++
T Consensus 45 sg~l~I~~dg~L~inG-k~v~L~~~Q 69 (239)
T PRK10626 45 SGNLVISPDGNVMRNG-KQLSLNAAQ 69 (239)
T ss_pred CCceEEcCCCCEEECC-EEecCCHHH
Confidence 6789999999999966 333444443
No 189
>PF06188 HrpE: HrpE/YscL/FliH and V-type ATPase subunit E; InterPro: IPR009335 This family consists of several bacterial HrpE proteins, which are believed to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) []. This family also includes V-type proton ATPase subunit E proteins. This subunit appears to form a tight interaction with subunit G in the F0 complex. Subunits E and G may act together as stators to prevent certain subunits from rotating with the central rotary element []. PF01991 from PFAM also contains V-type ATPase subunit E proteins. There is an evolutionary link between type III secretion systems and membrane-associated proton translocating ATPases [].
Probab=35.98 E-value=19 Score=26.98 Aligned_cols=46 Identities=17% Similarity=0.428 Sum_probs=29.2
Q ss_pred cCeEEEEccCCCCccceeEEeEEccCCe----eee--cCcCCCceEEEccCccEEE
Q psy5692 22 GNTAVLRCQIPSYMSEYIIVTSWIQDDV----NIY--LNTDTGGKYVVLSSGDLYV 71 (98)
Q Consensus 22 GNtAVLkC~IPs~V~d~V~V~SW~~Dd~----~I~--p~~~~dgKY~vlpsGeL~I 71 (98)
-..++|+|+ |+... .|..|+.+.. .+- ++...|.=-+..++|+++|
T Consensus 130 ~~~~tL~~h-P~~~~---~V~~~L~~~~~~~w~l~~D~sl~~~~l~L~t~~G~~~l 181 (191)
T PF06188_consen 130 ESEATLRCH-PDQLE---EVAAWLAEHPALHWQLQADESLAPDQLKLETANGEFRL 181 (191)
T ss_pred ccceEEEEC-HHHHH---HHHHHHHhCCCcceeeccCCCCCCCceEEEcCCCcEEE
Confidence 467999999 86544 3446666642 221 2333466667789999987
No 190
>PF13750 Big_3_3: Bacterial Ig-like domain (group 3)
Probab=33.81 E-value=1.8e+02 Score=21.02 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=17.2
Q ss_pred CccEEEEeEeeec--CCcceeeeee
Q psy5692 66 SGDLYVQIRLSIT--GNLSVKKMKV 88 (98)
Q Consensus 66 sGeL~Ir~v~~~~--~n~~~~~~~~ 88 (98)
.|+.|.-.|+..| ||.+.++...
T Consensus 121 ~~~~YtLtV~a~D~aGN~~~~si~F 145 (158)
T PF13750_consen 121 ADDSYTLTVSATDKAGNQSTKSISF 145 (158)
T ss_pred CCCeEEEEEEEEecCCCEEEEEEEE
Confidence 5888888887776 6777776643
No 191
>PRK12407 flgH flagellar basal body L-ring protein; Reviewed
Probab=31.01 E-value=66 Score=25.09 Aligned_cols=25 Identities=28% Similarity=0.174 Sum_probs=18.6
Q ss_pred EEccCccEEEEeEeeecCCcceeee
Q psy5692 62 VVLSSGDLYVQIRLSITGNLSVKKM 86 (98)
Q Consensus 62 ~vlpsGeL~Ir~v~~~~~n~~~~~~ 86 (98)
.|||+|.|.|+..+.+.=|--...+
T Consensus 142 ~VlpNGnL~I~GeK~i~vN~e~e~i 166 (221)
T PRK12407 142 QVLPNGVLVIRGEKWLTLNQGDEYM 166 (221)
T ss_pred EECCCCCEEEEEEEEEEECCCEEEE
Confidence 5799999999998777666544333
No 192
>PRK12696 flgH flagellar basal body L-ring protein; Reviewed
Probab=30.04 E-value=70 Score=25.17 Aligned_cols=26 Identities=19% Similarity=0.054 Sum_probs=20.0
Q ss_pred EEccCccEEEEeEeeecCCcceeeee
Q psy5692 62 VVLSSGDLYVQIRLSITGNLSVKKMK 87 (98)
Q Consensus 62 ~vlpsGeL~Ir~v~~~~~n~~~~~~~ 87 (98)
.|||+|.|.|+..+.+.=|--.-.+.
T Consensus 158 ~VLPNGNLvI~G~k~v~vN~e~~~i~ 183 (236)
T PRK12696 158 RVLPGGLMQVEGARETRVNDETQYIV 183 (236)
T ss_pred EECCCCCEEEEEEEEEEECCCEEEEE
Confidence 57999999999988877776554443
No 193
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=29.66 E-value=57 Score=23.17 Aligned_cols=29 Identities=17% Similarity=0.308 Sum_probs=22.0
Q ss_pred ceeecCeEEEEccC--CCCccceeEEeEEccCC
Q psy5692 18 NVILGNTAVLRCQI--PSYMSEYIIVTSWIQDD 48 (98)
Q Consensus 18 ~VirGNtAVLkC~I--Ps~V~d~V~V~SW~~Dd 48 (98)
.|-.|+++.|.|.. +++.++| -.+|++..
T Consensus 9 lv~p~~sv~LsC~~sg~~~s~e~--~~~wvRq~ 39 (115)
T cd05721 9 LASSNGAASLVCEYTYNGFSKEF--RASLLKGA 39 (115)
T ss_pred EEcCCCCEEEEEEecCCccccEE--EEEEEEeC
Confidence 56789999999998 5566656 45788874
No 194
>PRK12700 flgH flagellar basal body L-ring protein; Reviewed
Probab=29.56 E-value=72 Score=25.04 Aligned_cols=25 Identities=24% Similarity=0.205 Sum_probs=18.7
Q ss_pred EEccCccEEEEeEeeecCCcceeee
Q psy5692 62 VVLSSGDLYVQIRLSITGNLSVKKM 86 (98)
Q Consensus 62 ~vlpsGeL~Ir~v~~~~~n~~~~~~ 86 (98)
-|||+|.|.|+..+.+.=|.-.-.+
T Consensus 152 ~VlpNGNLvI~GeK~i~vN~~~e~i 176 (230)
T PRK12700 152 GVLPNGNLQIAGEKQIAINRGSEYV 176 (230)
T ss_pred EECCCCCEEEEEEEEEEECCCEEEE
Confidence 4799999999998877666544433
No 195
>PF09466 Yqai: Hypothetical protein Yqai; InterPro: IPR018474 The hypothetical protein YqaI is expressed in bacteria, particularly Bacillus subtilis. It forms a homo-dimer, with each monomer containing an alpha helix and four beta strands.; PDB: 2DSM_B.
Probab=28.89 E-value=40 Score=22.45 Aligned_cols=21 Identities=19% Similarity=0.534 Sum_probs=13.9
Q ss_pred eeeecCcCCCceEEEccCccEEEEe
Q psy5692 49 VNIYLNTDTGGKYVVLSSGDLYVQI 73 (98)
Q Consensus 49 ~~I~p~~~~dgKY~vlpsGeL~Ir~ 73 (98)
..|+| +..|++.|+||...++
T Consensus 32 ~EI~~----~D~y~i~~~geIvL~e 52 (71)
T PF09466_consen 32 DEIFP----GDDYFISPDGEIVLEE 52 (71)
T ss_dssp S-B-T----TS-EEE-ETTEEEECC
T ss_pred ccccc----CCeEEEeCCCcEEehh
Confidence 45666 7899999999998865
No 196
>cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=28.79 E-value=1.5e+02 Score=23.11 Aligned_cols=21 Identities=14% Similarity=0.477 Sum_probs=16.7
Q ss_pred EEccCCCCccceeEEeEEccC
Q psy5692 27 LRCQIPSYMSEYIIVTSWIQD 47 (98)
Q Consensus 27 LkC~IPs~V~d~V~V~SW~~D 47 (98)
++|-.|=-.+||+...||..|
T Consensus 102 ~~~~~p~p~RDfv~lRsW~~~ 122 (205)
T cd08907 102 TDSMAPHPRRDFVVLRMWRSD 122 (205)
T ss_pred ecCCCCCCCceEEEEEEEccC
Confidence 567777789999999999433
No 197
>PRK00249 flgH flagellar basal body L-ring protein; Reviewed
Probab=28.72 E-value=76 Score=24.60 Aligned_cols=25 Identities=20% Similarity=0.274 Sum_probs=18.7
Q ss_pred EEccCccEEEEeEeeecCCcceeee
Q psy5692 62 VVLSSGDLYVQIRLSITGNLSVKKM 86 (98)
Q Consensus 62 ~vlpsGeL~Ir~v~~~~~n~~~~~~ 86 (98)
-|||+|.|.|+..+.+.=|-..-.+
T Consensus 144 ~VlpNGnLvI~G~K~i~vN~e~~~i 168 (222)
T PRK00249 144 QVLPNGNLVIRGEKEVRVNQGTEFL 168 (222)
T ss_pred EECCCCcEEEEEEEEEEECCCEEEE
Confidence 4799999999998877766544433
No 198
>PRK12701 flgH flagellar basal body L-ring protein; Reviewed
Probab=28.24 E-value=78 Score=24.83 Aligned_cols=25 Identities=24% Similarity=0.126 Sum_probs=18.5
Q ss_pred EEEccCccEEEEeEeeecCCcceee
Q psy5692 61 YVVLSSGDLYVQIRLSITGNLSVKK 85 (98)
Q Consensus 61 Y~vlpsGeL~Ir~v~~~~~n~~~~~ 85 (98)
..|||+|.|.|+..+...=|--.-.
T Consensus 150 ~~VlpNGnL~I~GeK~v~vN~e~e~ 174 (230)
T PRK12701 150 AKVLANGNMVVQGEKWVRINQGNEF 174 (230)
T ss_pred EEECCCCCEEEEEEEEEEECCCeEE
Confidence 3579999999999877766654433
No 199
>PRK12697 flgH flagellar basal body L-ring protein; Reviewed
Probab=27.47 E-value=83 Score=24.74 Aligned_cols=25 Identities=24% Similarity=0.167 Sum_probs=18.8
Q ss_pred EEccCccEEEEeEeeecCCcceeee
Q psy5692 62 VVLSSGDLYVQIRLSITGNLSVKKM 86 (98)
Q Consensus 62 ~vlpsGeL~Ir~v~~~~~n~~~~~~ 86 (98)
.|||+|.|.|+..+.+.=|.-.-.+
T Consensus 148 ~VlpNGnL~I~GeK~i~vN~e~e~I 172 (226)
T PRK12697 148 NVLPNGNLVVSGEKQMLINQGNEFV 172 (226)
T ss_pred EECCCCCEEEEEEEEEEECCCEEEE
Confidence 5799999999998877666544433
No 200
>PF05738 Cna_B: Cna protein B-type domain; InterPro: IPR008454 This entry represents a repeated B region domain found in the collagen-binding surface protein Cna in Staphylococcus aureus, as well as other related domains. The B region domain of Cna has a prealbumin-like beta-sandwich fold of seven strands in two sheets with a Greek key topology []. However, this domain does not mediate collagen binding, the IPR008456 from INTERPRO region carries out that function; instead it appears to form a stalk that presents the ligand binding domain away from the bacterial cell surface. Cna is a collagen-binding MSCRAMM (Microbial Surface Component Recognizing Adhesive Matrix Molecules), and is necessary and sufficient for S. aureus cells to adhere to cartilage.; PDB: 2X5P_A 3RKP_A 3KPT_A 1VLF_T 1TI2_F 1TI6_D 1TI4_J 1VLE_V 1VLD_X 3PF2_A ....
Probab=26.73 E-value=74 Score=18.89 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=13.1
Q ss_pred CCceEEE--ccCccEEEEeEeeecC
Q psy5692 57 TGGKYVV--LSSGDLYVQIRLSITG 79 (98)
Q Consensus 57 ~dgKY~v--lpsGeL~Ir~v~~~~~ 79 (98)
.+|+|.. ||.|...|+++..-+|
T Consensus 25 ~~G~~~f~~L~~G~Y~l~E~~aP~G 49 (70)
T PF05738_consen 25 ENGKYTFKNLPPGTYTLKETKAPDG 49 (70)
T ss_dssp TTSEEEEEEEESEEEEEEEEETTTT
T ss_pred CCCEEEEeecCCeEEEEEEEECCCC
Confidence 4454444 5777777776664333
No 201
>PRK12788 flgH flagellar basal body L-ring protein; Reviewed
Probab=26.19 E-value=89 Score=24.69 Aligned_cols=25 Identities=20% Similarity=0.332 Sum_probs=18.8
Q ss_pred EEccCccEEEEeEeeecCCcceeee
Q psy5692 62 VVLSSGDLYVQIRLSITGNLSVKKM 86 (98)
Q Consensus 62 ~vlpsGeL~Ir~v~~~~~n~~~~~~ 86 (98)
.|||+|.|.|+..+...=|--...+
T Consensus 156 ~VLPNGNLvI~G~kev~vN~e~~~i 180 (234)
T PRK12788 156 DVLPNGNLLISGSQEVRVNYEMRVL 180 (234)
T ss_pred EEcCCCCEEEEEEEEEEECCCEEEE
Confidence 4799999999998877766544433
No 202
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=26.07 E-value=1.6e+02 Score=19.47 Aligned_cols=55 Identities=20% Similarity=0.233 Sum_probs=36.0
Q ss_pred EeeeeceeecCeEEEEccCCCCcc--ceeEEeEEccCCeeeecCcCCCceEEEccCccEEEE
Q psy5692 13 VNYEHNVILGNTAVLRCQIPSYMS--EYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQ 72 (98)
Q Consensus 13 V~d~~~VirGNtAVLkC~IPs~V~--d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir 72 (98)
+.....|-.|.+....|.+-.... +.-.-.-|--+...| | +.+|..++.+..-|.
T Consensus 9 ~p~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~i-P----~~qy~~in~~~SsVT 65 (89)
T PF06328_consen 9 SPPSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKI-P----GSQYRVINDTVSSVT 65 (89)
T ss_dssp ECSSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCES-T----CGCEEEESTTEEEEE
T ss_pred ecCCCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEEC-C----hhHcceeCCeEEEEE
Confidence 333436778999999999976554 344445577776633 6 689999998875443
No 203
>KOG0094|consensus
Probab=25.34 E-value=18 Score=28.72 Aligned_cols=13 Identities=38% Similarity=0.764 Sum_probs=11.0
Q ss_pred EEEEccCCCCccc
Q psy5692 25 AVLRCQIPSYMSE 37 (98)
Q Consensus 25 AVLkC~IPs~V~d 37 (98)
--|||.||+|.+|
T Consensus 82 ERFrslipsY~Rd 94 (221)
T KOG0094|consen 82 ERFRSLIPSYIRD 94 (221)
T ss_pred HHHhhhhhhhccC
Confidence 3589999999887
No 204
>PRK12698 flgH flagellar basal body L-ring protein; Reviewed
Probab=25.20 E-value=97 Score=24.15 Aligned_cols=25 Identities=24% Similarity=0.184 Sum_probs=18.5
Q ss_pred EEccCccEEEEeEeeecCCcceeee
Q psy5692 62 VVLSSGDLYVQIRLSITGNLSVKKM 86 (98)
Q Consensus 62 ~vlpsGeL~Ir~v~~~~~n~~~~~~ 86 (98)
-|||+|.|.|+..+.+.=|--.-.+
T Consensus 145 ~VlpNGnL~I~GeK~i~vN~~~e~I 169 (224)
T PRK12698 145 QVLPNGNLVIRGEKWISINNGDEFI 169 (224)
T ss_pred EECCCCCEEEEEEEEEEECCCEEEE
Confidence 5799999999998777666544333
No 205
>PF05132 RNA_pol_Rpc4: RNA polymerase III RPC4; InterPro: IPR007811 This family comprises a specific subunit for Pol III, the tRNA specific polymerase.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006383 transcription from RNA polymerase III promoter, 0005666 DNA-directed RNA polymerase III complex
Probab=25.11 E-value=1e+02 Score=21.48 Aligned_cols=34 Identities=21% Similarity=0.437 Sum_probs=25.8
Q ss_pred CCCccceeEEeEEccCCeeeecCcCCCceEEEccC
Q psy5692 32 PSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSS 66 (98)
Q Consensus 32 Ps~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlps 66 (98)
++|.++-+.+.. ..+...++.-.+..+|+++.|+
T Consensus 97 ~~FlQevv~i~~-~~~~~~~~~LG~v~~k~v~tPd 130 (131)
T PF05132_consen 97 CSFLQEVVAIDE-EEEEGECYFLGQVSGKFVVTPD 130 (131)
T ss_pred CCchheEEEeec-cCCCCeEEEeccccceEEEccC
Confidence 578899999998 3233666666678999999985
No 206
>PRK14051 negative regulator GrlR; Provisional
Probab=23.91 E-value=1.2e+02 Score=22.06 Aligned_cols=41 Identities=15% Similarity=0.254 Sum_probs=26.7
Q ss_pred eceEEEEeeeeceeecCeEEEEccCCCCccceeEEeEEccCC
Q psy5692 7 QKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD 48 (98)
Q Consensus 7 Q~Yev~V~d~~~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd 48 (98)
|.|..-.... +--.||.+.|+|++..--+=||.+.+=+-++
T Consensus 69 qdy~L~i~kk-~~sn~~~~~l~~HV~~Nekl~vdv~akFI~~ 109 (123)
T PRK14051 69 QDYQLVIPKK-VLSNDNNLTLHCHVRGNEKLFVDVYAKFIEP 109 (123)
T ss_pred ccEEEecchh-heeCCCCeEEEEEEcCCcEEEEEEeeeeeee
Confidence 5566666655 5668999999999774444455554444333
No 207
>PRK12699 flgH flagellar basal body L-ring protein; Reviewed
Probab=23.72 E-value=1e+02 Score=24.47 Aligned_cols=24 Identities=25% Similarity=0.210 Sum_probs=17.9
Q ss_pred EEEccCccEEEEeEeeecCCccee
Q psy5692 61 YVVLSSGDLYVQIRLSITGNLSVK 84 (98)
Q Consensus 61 Y~vlpsGeL~Ir~v~~~~~n~~~~ 84 (98)
.-|||+|-|.|+..+.+.=|--.-
T Consensus 168 v~VLPNGNLvI~GeK~i~vN~~~e 191 (246)
T PRK12699 168 VDILPNGNLLVSGEKQIGINQGHE 191 (246)
T ss_pred EEECCCCCEEEEEEEEEEECCCeE
Confidence 357999999999887766655433
No 208
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=23.21 E-value=69 Score=21.87 Aligned_cols=31 Identities=16% Similarity=0.172 Sum_probs=22.3
Q ss_pred eceeecCeEEEEccCCCCccceeEEeEEccCC
Q psy5692 17 HNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD 48 (98)
Q Consensus 17 ~~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd 48 (98)
.+++.|.+-.|.|..||.-..- .-..|..-.
T Consensus 9 ~~lL~G~sLtLtl~~~s~s~p~-~~i~w~~P~ 39 (88)
T cd07694 9 DHVLSGTNLTLTLHGSSNSLPA-FKVEWRGPG 39 (88)
T ss_pred CeeecCCcEEEEEecCCCCCCC-ccEEEeCCC
Confidence 3899999999999998752212 234687665
No 209
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=22.78 E-value=1.9e+02 Score=17.52 Aligned_cols=26 Identities=19% Similarity=0.590 Sum_probs=17.6
Q ss_pred eEEEEccCCCCccceeEEeEEccCCee
Q psy5692 24 TAVLRCQIPSYMSEYIIVTSWIQDDVN 50 (98)
Q Consensus 24 tAVLkC~IPs~V~d~V~V~SW~~Dd~~ 50 (98)
.|+|.|.+..|--.- ....|.+|+..
T Consensus 1 ~~~L~C~a~gf~P~~-i~v~W~k~g~~ 26 (75)
T smart00407 1 KATLVCLVSGFYPPD-ITVTWLRNGQE 26 (75)
T ss_pred CeEEEEEEEeEeCCC-CEEEEEECCEE
Confidence 378999987443222 35789998854
No 210
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=21.41 E-value=69 Score=25.17 Aligned_cols=19 Identities=26% Similarity=0.488 Sum_probs=15.4
Q ss_pred eeeecCcCCCceEEEccCccEEEEe
Q psy5692 49 VNIYLNTDTGGKYVVLSSGDLYVQI 73 (98)
Q Consensus 49 ~~I~p~~~~dgKY~vlpsGeL~Ir~ 73 (98)
.++|| .-++||+|.|+|.-
T Consensus 169 ~nlYP------~~~llPdG~lFi~a 187 (243)
T PF07250_consen 169 NNLYP------FVHLLPDGNLFIFA 187 (243)
T ss_pred cccCc------eEEEcCCCCEEEEE
Confidence 67777 67889999999854
No 211
>PF13793 Pribosyltran_N: N-terminal domain of ribose phosphate pyrophosphokinase; PDB: 2JI4_A 1DKU_B 1IBS_B 1DKR_B 3MBI_C 3LRT_B 3LPN_B 3NAG_B 2H07_B 2H06_B ....
Probab=20.71 E-value=1e+02 Score=21.27 Aligned_cols=23 Identities=26% Similarity=0.393 Sum_probs=13.1
Q ss_pred eEEEccCccEEEEeEeeecCCcc
Q psy5692 60 KYVVLSSGDLYVQIRLSITGNLS 82 (98)
Q Consensus 60 KY~vlpsGeL~Ir~v~~~~~n~~ 82 (98)
....+|+||+|++--...+|.+.
T Consensus 28 ~~~~F~dGE~~v~i~~~v~g~dv 50 (116)
T PF13793_consen 28 ETKRFPDGETYVRIPESVRGKDV 50 (116)
T ss_dssp EEEE-TTS-EEEEESS--TTSEE
T ss_pred EEEEcCCCCEEEEecccccCCce
Confidence 44557899999987666666543
No 212
>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A.
Probab=20.19 E-value=95 Score=18.69 Aligned_cols=19 Identities=26% Similarity=0.625 Sum_probs=11.0
Q ss_pred CcCCCceEEE--ccCccEEEE
Q psy5692 54 NTDTGGKYVV--LSSGDLYVQ 72 (98)
Q Consensus 54 ~~~~dgKY~v--lpsGeL~Ir 72 (98)
.+|.+|+|.+ +|.|...|+
T Consensus 33 ~Td~~G~f~~~~l~~g~Y~l~ 53 (82)
T PF13620_consen 33 TTDSDGRFSFEGLPPGTYTLR 53 (82)
T ss_dssp E--TTSEEEEEEE-SEEEEEE
T ss_pred EECCCceEEEEccCCEeEEEE
Confidence 4567788887 567776654
Done!