RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5692
(98 letters)
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion,
membrane, development protein; HET: NAG; 1.95A
{Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Length = 388
Score = 53.0 bits (127), Expect = 6e-10
Identities = 23/55 (41%), Positives = 40/55 (72%), Gaps = 1/55 (1%)
Query: 19 VILGNTAVLRCQIPSYMSEYIIVTSWIQDD-VNIYLNTDTGGKYVVLSSGDLYVQ 72
VI GN+AV++C IPS++++++ V SW D+ N + + GKY+VL SG+L+++
Sbjct: 115 VIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIR 169
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30,
N-terminal eight IG domains...; immunoglobulin domain;
HET: NAG NDG; 4.19A {Drosophila melanogaster}
Length = 816
Score = 48.4 bits (115), Expect = 3e-08
Identities = 23/55 (41%), Positives = 40/55 (72%), Gaps = 1/55 (1%)
Query: 19 VILGNTAVLRCQIPSYMSEYIIVTSWIQDD-VNIYLNTDTGGKYVVLSSGDLYVQ 72
VI GN+AV++C IPS++++++ V SW D+ N + + GKY+VL SG+L+++
Sbjct: 150 VIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIR 204
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus
gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB:
2om5_A
Length = 382
Score = 45.2 bits (107), Expect = 4e-07
Identities = 10/54 (18%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Query: 19 VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQ 72
+ G + C P + W+ ++ ++ D G ++V ++G+LY+
Sbjct: 113 ITEGWGVMFTCSPPPHYPALSY--RWLLNEFPNFIPAD-GRRFVSQTTGNLYIA 163
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor
protein tyrosine phosphatase; HET: NAG; 2.00A {Mus
musculus} PDB: 3jxa_A*
Length = 384
Score = 44.1 bits (104), Expect = 9e-07
Identities = 14/69 (20%), Positives = 28/69 (40%), Gaps = 5/69 (7%)
Query: 4 VVKQKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVV 63
+ ++ +V G VL C P + E +WI ++ Y + ++V
Sbjct: 99 AYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSY--AWIFNEYPSYQD---NRRFVS 153
Query: 64 LSSGDLYVQ 72
+G+LY+
Sbjct: 154 QETGNLYIA 162
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell
adhesion comple adhesion; HET: NAG; 2.30A {Homo
sapiens}
Length = 201
Score = 41.8 bits (98), Expect = 6e-06
Identities = 12/52 (23%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 19 VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLY 70
V G VL C P + + + W+ ++ +++ D ++V ++G+LY
Sbjct: 20 VKEGKGMVLLCDPPYHFPDDLSYR-WLLNEFPVFITMD-KRRFVSQTNGNLY 69
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A
{Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
b.1.1.4
Length = 395
Score = 37.6 bits (87), Expect = 2e-04
Identities = 12/57 (21%), Positives = 20/57 (35%), Gaps = 5/57 (8%)
Query: 19 VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDT---GGKYVVLSSGDLYVQ 72
I G L C +P+ + +I +W + N D + G+LY
Sbjct: 112 PIEGRPFQLDCVLPNAYPKPLI--TWKKRLSGADPNADVTDFDRRITAGPDGNLYFT 166
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo
sapiens} PDB: 3p40_A*
Length = 404
Score = 34.5 bits (79), Expect = 0.002
Identities = 11/54 (20%), Positives = 18/54 (33%), Gaps = 5/54 (9%)
Query: 19 VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQ 72
V G L+C P + +I W+ + + +GDLY
Sbjct: 128 VQEGAPLTLQCNPPPGLPSPVI--FWMSSSMEPITQDK---RVSQGHNGDLYFS 176
>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor,
adhesion, structural genomics, NEW YORK STR genomics
research consortium, nysgrc; 1.70A {Homo sapiens} PDB:
3rq3_A 3udw_A* 3ucr_A
Length = 117
Score = 33.7 bits (77), Expect = 0.003
Identities = 14/84 (16%), Positives = 30/84 (35%), Gaps = 6/84 (7%)
Query: 10 EINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDL 69
I + G + +L+C + S ++ V W Q D + + G ++ S D
Sbjct: 6 TIETTGNISAEKGGSIILQCHLSSTTAQVTQVN-WEQQDQLLAICNADLGWHISPSFKD- 63
Query: 70 YVQIRLSITGNLSVKKMKVEEEEE 93
R++ L + + +
Sbjct: 64 ----RVAPGPGLGLTLQSLTVNDT 83
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin
superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus
norvegicus}
Length = 403
Score = 34.0 bits (78), Expect = 0.003
Identities = 12/54 (22%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Query: 19 VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQ 72
+G+T +L+C++ I W ++ ++ + VVL SG L +
Sbjct: 133 AFMGDTVLLKCEVIGDPMPTI---HWQKNQQDLNPIPGD-SRVVVLPSGALQIS 182
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation,
phosphorylation, disease MU neuronal development,
immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens}
PDB: 2v9q_A
Length = 212
Score = 33.6 bits (77), Expect = 0.004
Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 6/54 (11%)
Query: 19 VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQ 72
V +G AV+ CQ P E I SW +D + D + + + G L +
Sbjct: 123 VAVGEPAVMECQPPRGHPEPTI--SWKKDGSPL----DDKDERITIRGGKLMIT 170
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell
adhesion, immunoglobulin domain; 3.2A {Drosophila
melanogaster} PDB: 2vra_A*
Length = 217
Score = 32.5 bits (74), Expect = 0.009
Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 6/58 (10%)
Query: 19 VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNI----YLNTDTGGKYVVLSSGDLYVQ 72
V G TA+L C P + E + WI+D V + ++ + ++ G+L +
Sbjct: 120 VAKGETALLECGPPKGIPEPTL--IWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLIS 175
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 100
Score = 31.2 bits (71), Expect = 0.014
Identities = 9/60 (15%), Positives = 21/60 (35%), Gaps = 16/60 (26%)
Query: 18 NVILGNTAVLRCQI-----PSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQ 72
+ + TA+L+C+ P SW+++ + + G L ++
Sbjct: 19 TLAVDGTALLKCKATGDPLPVI--------SWLKEGFTF---PGRDPRATIQEQGTLQIK 67
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted
in U twenty twenty, neurogenesis, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 31.7 bits (72), Expect = 0.015
Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 16/59 (27%)
Query: 19 VILGNTAVLRCQI-----PSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQ 72
V + T VL C P+ W +D V + + L +G L ++
Sbjct: 20 VAVDGTFVLSCVATGSPVPTI--------LWRKDGVLVSTQ---DSRIKQLENGVLQIR 67
>2v9t_A Roundabout homolog 1; structural protein-receptor complex,
developmental protein, domain, roundabout, chemotaxis,
LRR domain; 1.70A {Homo sapiens}
Length = 117
Score = 29.0 bits (65), Expect = 0.11
Identities = 12/60 (20%), Positives = 21/60 (35%), Gaps = 14/60 (23%)
Query: 19 VILGNTAVLRCQI-----PSYMSEYIIVTSWIQDDVNIYLNTDTGGKY-VVLSSGDLYVQ 72
V G A L C+ P+ W + + + D + ++L SG L+
Sbjct: 21 VSKGEPATLNCKAEGRPTPTI--------EWYKGGERVETDKDDPRSHRMLLPSGSLFFL 72
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling
protein,transferase; 2.21A {Rattus norvegicus}
Length = 192
Score = 29.3 bits (66), Expect = 0.13
Identities = 17/59 (28%), Positives = 22/59 (37%), Gaps = 17/59 (28%)
Query: 19 VILGNTAVLRCQI-----PSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQ 72
+I G AVL C PS SWI+ D + + VL SG L +
Sbjct: 112 IIEGLKAVLPCTTMGNPKPSV--------SWIKGDSAL----RENSRIAVLESGSLRIH 158
Score = 26.6 bits (59), Expect = 1.4
Identities = 9/57 (15%), Positives = 19/57 (33%), Gaps = 16/57 (28%)
Query: 18 NVILGNTAVLRCQI-----PSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDL 69
+ ++ A C + P SW ++ + I +Y + +G L
Sbjct: 18 DALVEEVATFMCAVESYPQPEI--------SWTRNKILI---KLFDTRYSIRENGQL 63
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker,
immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Length = 642
Score = 29.2 bits (65), Expect = 0.16
Identities = 8/67 (11%), Positives = 19/67 (28%), Gaps = 12/67 (17%)
Query: 18 NVILGNTAVLRCQ-----IPSY-------MSEYIIVTSWIQDDVNIYLNTDTGGKYVVLS 65
NV G +L + Y + + ++ G+ ++
Sbjct: 10 NVAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYP 69
Query: 66 SGDLYVQ 72
+ L +Q
Sbjct: 70 NASLLIQ 76
Score = 24.5 bits (53), Expect = 7.7
Identities = 8/71 (11%), Positives = 24/71 (33%), Gaps = 7/71 (9%)
Query: 2 LPVVKQKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKY 61
+ K I+ N V + C+ + + Y+ W ++ ++ ++
Sbjct: 106 VYPELPKPSISSNNSKPVEDKDAVAFTCEPETQDATYL----WWVNNQSLPVSPRL---Q 158
Query: 62 VVLSSGDLYVQ 72
+ + L +
Sbjct: 159 LSNGNRTLTLF 169
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold,
glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4
b.1.1.4 PDB: 2ncm_A 3ncm_A
Length = 191
Score = 29.0 bits (65), Expect = 0.19
Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 15/60 (25%)
Query: 18 NVILGNTAVLRCQI-----PSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQ 72
G AV+ C + P+ W ++ L D +++VLS+ L ++
Sbjct: 111 EFKEGEDAVIVCDVVSSLPPTI--------IWKHKGRDVILKKD--VRFIVLSNNYLQIR 160
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane,
transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo
sapiens}
Length = 291
Score = 29.0 bits (65), Expect = 0.20
Identities = 9/59 (15%), Positives = 24/59 (40%), Gaps = 15/59 (25%)
Query: 19 VILGNTAVLRCQI-----PSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQ 72
G A + C++ P+ SW+ + + T + ++ +L++ +L +
Sbjct: 110 FKQGEDAEVVCRVSSSPAPAV--------SWLYHNEEV--TTISDNRFAMLANNNLQIL 158
>2bb3_A Cobalamin biosynthesis precorrin-6Y methylase (CB; beta,
alpha-beta-alpha sandwich, structural genomics, PSI, P
structure initiative; HET: SAH; 2.27A {Archaeoglobus
fulgidus} SCOP: c.90.1.1
Length = 221
Score = 28.6 bits (64), Expect = 0.26
Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 2/54 (3%)
Query: 16 EHNVILGNTAVLRCQIPSYMSE-YIIVTSWIQDDVNIYLNTDTGGKYVVLSSGD 68
VI G+ L I+ S+ D++ + + V+S+GD
Sbjct: 46 RAEVIYGSRRALE-LAGVVDDSRARILRSFKGDEIRRIMEEGREREVAVISTGD 98
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3;
immunoglobulin, VCBP, V-type, V SET, immune system;
1.85A {Branchiostoma floridae}
Length = 250
Score = 28.3 bits (62), Expect = 0.34
Identities = 12/54 (22%), Positives = 16/54 (29%)
Query: 19 VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQ 72
V G T L C V SW++ G Y G +V+
Sbjct: 14 VHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVE 67
>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin
domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr
virus}
Length = 201
Score = 28.1 bits (62), Expect = 0.34
Identities = 9/60 (15%), Positives = 21/60 (35%), Gaps = 3/60 (5%)
Query: 19 VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSIT 78
+ + C + ++ ++ W+ + T G + G L V + LS+
Sbjct: 116 FPDFSVLTVTCTVNAFPHPHV---QWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLP 172
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative
splicing, cell adhesion, cell membrane, glycoprotein,
HOST-virus interaction; 3.50A {Homo sapiens} PDB:
3uro_R 3epc_R* 3epd_R* 3epf_R*
Length = 221
Score = 28.1 bits (62), Expect = 0.40
Identities = 16/89 (17%), Positives = 35/89 (39%), Gaps = 7/89 (7%)
Query: 10 EINVNYEHNVILGNTAVLRCQI--PSYMSEYIIVTSWIQDDV--NIYLNTDTGGKYVVLS 65
+ + LG++ L C + P+ ++ +W + ++ + T G S
Sbjct: 2 VVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSES 61
Query: 66 SGDLYVQIRLSIT---GNLSVKKMKVEEE 91
+V RL +L + ++VE+E
Sbjct: 62 KRLEFVAARLGAELRDASLRMFGLRVEDE 90
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, IG, membrane, homphilic,
glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB:
2xy2_A* 2vaj_A
Length = 189
Score = 27.8 bits (62), Expect = 0.47
Identities = 9/59 (15%), Positives = 24/59 (40%), Gaps = 15/59 (25%)
Query: 19 VILGNTAVLRCQI-----PSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQ 72
G A + C++ P+ SW+ + + +D ++ +L++ +L +
Sbjct: 108 FKQGEDAEVVCRVSSSPAPAV--------SWLYHNEEVTTISD--NRFAMLANNNLQIL 156
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, membrane, glycoprote adhesion,
transmembrane; HET: NAG; 2.00A {Homo sapiens}
Length = 189
Score = 27.4 bits (61), Expect = 0.56
Identities = 9/58 (15%), Positives = 23/58 (39%), Gaps = 15/58 (25%)
Query: 18 NVILGNTAVLRCQI-----PSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLY 70
G A + C++ P+ SW+ + + T + ++ +L++ +L
Sbjct: 13 EFKQGEDAEVVCRVSSSPAPAV--------SWLYHNEEV--TTISDNRFAMLANNNLQ 60
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila
melanogaster} PDB: 3pxj_A
Length = 212
Score = 27.4 bits (61), Expect = 0.58
Identities = 10/59 (16%), Positives = 22/59 (37%), Gaps = 17/59 (28%)
Query: 19 VILGNTAVLRCQI-----PSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQ 72
+ +G+T ++ C+ P+ WI++ + D L G L ++
Sbjct: 122 IEVGHTVLMTCKAIGNPTPNI--------YWIKNQTKV----DMSNPRYSLKDGFLQIE 168
Score = 24.4 bits (53), Expect = 8.4
Identities = 9/58 (15%), Positives = 17/58 (29%), Gaps = 15/58 (25%)
Query: 19 VILGNTAVLRCQI-----PSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYV 71
V +G A C PS W ++ + + V+ G + +
Sbjct: 18 VRVGGVASFYCAARGDPPPSI--------VWRKNGKKV--SGTQSRYTVLEQPGGISI 65
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human
coxsackievirus A21, cryo-electron
microscopy,virus-receptor complex, icosahedral virus;
HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3
b.1.1.4 b.1.1.4 b.1.1.4
Length = 450
Score = 27.5 bits (60), Expect = 0.61
Identities = 6/45 (13%), Positives = 13/45 (28%)
Query: 14 NYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTG 58
+G LRCQ+ + ++ + + G
Sbjct: 93 PLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVG 137
>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond,
glycoprotein, immunoglobulin membrane, transmembrane;
HET: NAG; 2.21A {Mus musculus}
Length = 108
Score = 26.8 bits (59), Expect = 0.72
Identities = 10/62 (16%), Positives = 22/62 (35%), Gaps = 9/62 (14%)
Query: 19 VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDT----GGKYVVL--SSGDLYVQ 72
V+ G TA+L C++ + + W D + ++ S +L +
Sbjct: 18 VVEGGTAILTCRVDQNDNTSL---QWSNPAQQTLYFDDKKALRDNRIELVRASWHELSIS 74
Query: 73 IR 74
+
Sbjct: 75 VS 76
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling
protein/receptor, growth regulation/complex, vitamin
K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Length = 195
Score = 27.2 bits (60), Expect = 0.74
Identities = 12/71 (16%), Positives = 24/71 (33%), Gaps = 6/71 (8%)
Query: 19 VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSIT 78
G T LRCQ+ + W++D + L T + + Q +
Sbjct: 14 GARGLTGTLRCQLQVQGEPPEV--HWLRDGQILELADSTQTQVPLGEDE----QDDWIVV 67
Query: 79 GNLSVKKMKVE 89
L + +++
Sbjct: 68 SQLRITSLQLS 78
>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus,
picornavirus, virus/receptor complex; 15.00A {Homo
sapiens} SCOP: i.6.1.1 PDB: 1dgi_R
Length = 302
Score = 27.0 bits (59), Expect = 0.86
Identities = 7/54 (12%), Positives = 18/54 (33%), Gaps = 2/54 (3%)
Query: 19 VILGNTAVLRCQI--PSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLY 70
LG++ L C + P+ ++ +W + + + + S
Sbjct: 12 GFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRL 65
>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody,
immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL
SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2
b.1.1.2 PDB: 2qej_A*
Length = 214
Score = 27.1 bits (60), Expect = 0.94
Identities = 11/52 (21%), Positives = 18/52 (34%), Gaps = 4/52 (7%)
Query: 19 VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNT----DTGGKYVVLSS 66
++LG+ A L C + + +W + D G Y V S
Sbjct: 16 LLLGSEANLTCTLTGLRDASGVTFTWTPSSGKSAVQGPPERDLCGCYSVSSV 67
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG
B3P; 2.60A {Homo sapiens}
Length = 304
Score = 27.1 bits (60), Expect = 1.0
Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 14/59 (23%)
Query: 19 VILGNTAVLRCQI-----PSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQ 72
V TA + C P +W +D + + + + G+ L SG L ++
Sbjct: 120 VERTRTATMLCAASGNPDPEI--------TWFKDFLPVDPSA-SNGRIKQLRSGALQIE 169
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain,
cell adhesion, cell junction, glycoprotein,
immunoglobulin domain, membrane; HET: NAG FUC; 2.19A
{Mus musculus} PDB: 3mj7_A* 3mj9_A*
Length = 268
Score = 26.8 bits (58), Expect = 1.0
Identities = 10/64 (15%), Positives = 22/64 (34%)
Query: 19 VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSIT 78
V +G + ++ C + +++ W+ + Y LS Q R +
Sbjct: 17 VHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLV 76
Query: 79 GNLS 82
G+
Sbjct: 77 GDTF 80
Score = 26.0 bits (56), Expect = 2.3
Identities = 12/68 (17%), Positives = 27/68 (39%), Gaps = 4/68 (5%)
Query: 19 VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVN----IYLNTDTGGKYVVLSSGDLYVQIR 74
V +G+T +RC I S + + +W+ + + + + R
Sbjct: 130 VRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNR 189
Query: 75 LSITGNLS 82
+ +TG++S
Sbjct: 190 VDLTGDIS 197
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune
system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A
4f8q_A
Length = 226
Score = 27.0 bits (59), Expect = 1.1
Identities = 10/42 (23%), Positives = 17/42 (40%)
Query: 19 VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGK 60
++G A L C + MS + W+ + +N GK
Sbjct: 16 AMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGK 57
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily.,
cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Length = 231
Score = 26.3 bits (57), Expect = 1.5
Identities = 7/68 (10%), Positives = 15/68 (22%), Gaps = 3/68 (4%)
Query: 18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD---VNIYLNTDTGGKYVVLSSGDLYVQIR 74
V+ G + +L C Y++ + G + V
Sbjct: 11 EVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPP 70
Query: 75 LSITGNLS 82
+
Sbjct: 71 YQLDSQGR 78
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein
3; structural genomics, joint center for struct
genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Length = 112
Score = 26.2 bits (57), Expect = 1.5
Identities = 10/62 (16%), Positives = 21/62 (33%), Gaps = 2/62 (3%)
Query: 18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIR-LS 76
+ I G+ C S S+ + +W D+ + ++ G+L L
Sbjct: 21 SAIXGSDVSFTCSAASS-SDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTILR 79
Query: 77 IT 78
+
Sbjct: 80 LR 81
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein
complex, receptor tyrosine kinas binding,
immunoglobulin domain, kinase, membrane, nucleotid
binding; HET: NAG; 2.10A {Homo sapiens}
Length = 241
Score = 26.4 bits (58), Expect = 1.5
Identities = 12/61 (19%), Positives = 18/61 (29%), Gaps = 13/61 (21%)
Query: 17 HNVILGNTAVLRCQ-----IPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYV 71
V NT RC PS SW+++ GG + L +
Sbjct: 25 LAVPAANTVRFRCPAAGNPTPSI--------SWLKNGREFRGEHRIGGIKLRHQQWSLVM 76
Query: 72 Q 72
+
Sbjct: 77 E 77
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor,
tight junction formation, immunoglobulin superfamily,
immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1
b.1.1.4 PDB: 3eoy_G
Length = 209
Score = 26.5 bits (58), Expect = 1.6
Identities = 16/72 (22%), Positives = 23/72 (31%), Gaps = 8/72 (11%)
Query: 18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSI 77
+ +GN AVL C +W +D + + T K S YV
Sbjct: 118 SATIGNRAVLTCSEQDGSPPSEY--TWFKDGIVM----PTNPKSTRAFSNSSYVLN--PT 169
Query: 78 TGNLSVKKMKVE 89
TG L +
Sbjct: 170 TGELVFDPLSAS 181
>1xt5_A Variable region-containing chitin-binding protein 3; innate
immunity, VCBP, primordial antigen receptor, florida
lancelet, amphioxus; 1.15A {Branchiostoma floridae}
Length = 135
Score = 26.0 bits (56), Expect = 1.6
Identities = 12/57 (21%), Positives = 16/57 (28%)
Query: 18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIR 74
V G T L C V SW++ G Y G +V+
Sbjct: 15 EVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESD 71
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules,
NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4
b.1.1.4 PDB: 1ie5_A
Length = 291
Score = 26.4 bits (58), Expect = 1.6
Identities = 9/71 (12%), Positives = 24/71 (33%), Gaps = 12/71 (16%)
Query: 19 VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSIT 78
+ +G + CQ+ + I SW + G+ + + + V +
Sbjct: 14 ISVGESKFFLCQVAGDAKDKDI--SWFSPN----------GEKLSPNQQRISVVWNDDDS 61
Query: 79 GNLSVKKMKVE 89
L++ ++
Sbjct: 62 STLTIYNANID 72
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 25.8 bits (57), Expect = 1.9
Identities = 7/59 (11%), Positives = 16/59 (27%), Gaps = 9/59 (15%)
Query: 19 VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSI 77
V+ G + C + + W + + ++ G Y L +
Sbjct: 20 VLEGESCSFECVLSHESASDPA--MWTVGGKTV----GSSSRFQATRQGRKY---ILVV 69
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like
protein 3, nephrin- like 2, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 25.6 bits (56), Expect = 2.1
Identities = 11/64 (17%), Positives = 23/64 (35%), Gaps = 4/64 (6%)
Query: 5 VKQKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVL 64
V I+ + + G ++C I S + +W + + + T G+Y V
Sbjct: 11 VNGPPIISSTQTQHALHGEKGQIKCFIRS--TPPPDRIAWSWKENVL--ESGTSGRYTVE 66
Query: 65 SSGD 68
+
Sbjct: 67 TIST 70
>2edh_A Obscurin; structural genomics, NPPSFA, national project on P
structural and functional analyses, riken structural
genomics/proteomics initiative; NMR {Homo sapiens}
Length = 113
Score = 25.4 bits (56), Expect = 2.1
Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 12/61 (19%)
Query: 19 VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSIT 78
G TAVLRC++ S+ V W + + G ++ + G L I
Sbjct: 31 ATEGATAVLRCEL----SKMAPVE-WWKGHETL----RDGDRHSLRQDGARC---ELQIR 78
Query: 79 G 79
G
Sbjct: 79 G 79
>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} PDB: 2yz8_A
Length = 103
Score = 25.4 bits (56), Expect = 2.2
Identities = 14/62 (22%), Positives = 22/62 (35%), Gaps = 11/62 (17%)
Query: 18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSI 77
V+ G A LRC + S + V W + + G KY + G + L +
Sbjct: 19 EVLEGGAATLRCVLSSVAAP---VK-WCYGNNVL----RPGDKYSLRQEGAML---ELVV 67
Query: 78 TG 79
Sbjct: 68 RN 69
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex,
beta trefoil, IG domain, growth factor/growth factor
receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4
Length = 334
Score = 26.1 bits (57), Expect = 2.3
Identities = 9/54 (16%), Positives = 16/54 (29%), Gaps = 7/54 (12%)
Query: 19 VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQ 72
G+ L C P W++D + + V++ L V
Sbjct: 20 FGSGDAVELSCPPPGGGPMGPT--VWVKDGTGL-----VPSERVLVGPQRLQVL 66
Score = 25.7 bits (56), Expect = 3.0
Identities = 12/58 (20%), Positives = 16/58 (27%), Gaps = 13/58 (22%)
Query: 17 HNVILGNTAVLRCQ-----IPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDL 69
V NT RC PS SW+++ GG + L
Sbjct: 133 LAVPAANTVRFRCPAAGNPTPSI--------SWLKNGREFRGEHRIGGIKLRHQQWSL 182
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing,
ATP-binding, calcium, calmodulin-binding,
cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A
2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Length = 100
Score = 25.0 bits (55), Expect = 2.9
Identities = 10/66 (15%), Positives = 20/66 (30%), Gaps = 18/66 (27%)
Query: 19 VILGNTAVLRCQI-----PSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQI 73
+ G + C P +W I ++ G++ + ++ DL
Sbjct: 17 IDEGKVLTVACAFTGEPTPEV--------TWSCGGRKI--HSQEQGRFHIENTDDLT--- 63
Query: 74 RLSITG 79
L I
Sbjct: 64 TLIIMD 69
>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural
genomics, PSI-biology, NEW YORK struc genomics research
consortium, nysgrc; 2.30A {Homo sapiens}
Length = 124
Score = 25.3 bits (55), Expect = 2.9
Identities = 11/74 (14%), Positives = 26/74 (35%), Gaps = 7/74 (9%)
Query: 18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSI 77
V G T L+C + + W+ + Y VL + + +
Sbjct: 12 TVEEGQTLTLKCVTSLRKNSSL---QWLTPSGFTIFLNE----YPVLKNSKYQLLHHSAN 64
Query: 78 TGNLSVKKMKVEEE 91
+++V + +++E
Sbjct: 65 QLSITVPNVTLQDE 78
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif,
immunoglobulin-like domain, growth facto factor
receptor, extracellular; 2.10A {Homo sapiens} PDB:
1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E
1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Length = 231
Score = 25.6 bits (56), Expect = 3.2
Identities = 12/61 (19%), Positives = 18/61 (29%), Gaps = 13/61 (21%)
Query: 17 HNVILGNTAVLRCQI-----PSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYV 71
H V NT RC P+ W+++ GG V L +
Sbjct: 29 HAVPAANTVKFRCPAGGNPMPTM--------RWLKNGKEFKQEHRIGGYKVRNQHWSLIM 80
Query: 72 Q 72
+
Sbjct: 81 E 81
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell
adhesion, transmembrane, disulfide bond, alternative
splicing; HET: NAG; 1.95A {Rattus norvegicus}
Length = 190
Score = 25.2 bits (55), Expect = 3.3
Identities = 7/60 (11%), Positives = 22/60 (36%), Gaps = 14/60 (23%)
Query: 18 NVILGNTAVLRCQI-----PSYMSEYIIVTSWIQDDVNIYLNTD-TGGKYVVLSSGDLYV 71
N G A++ C+ P + W + + ++ + G++ +++ +
Sbjct: 103 NKNEGQDAMMYCKSVGYPHPEW--------MWRKKENGVFEEISNSSGRFFIINKENYTE 154
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed
death-1 ligand 1, complex, costimulatory, immune
system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Length = 222
Score = 25.3 bits (55), Expect = 3.3
Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 19 VILGNTAVLRCQIPSYMSEYI--IVTSWIQDDVNIYL 53
V G+ + C+ P + ++ W +D NI
Sbjct: 13 VEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQ 49
>1f97_A Junction adhesion molecule; immunoglobulin superfamily,
beta-sandwich fold, cell adhesion; 2.50A {Mus musculus}
SCOP: b.1.1.1 b.1.1.4
Length = 212
Score = 25.3 bits (55), Expect = 3.5
Identities = 14/68 (20%), Positives = 26/68 (38%), Gaps = 7/68 (10%)
Query: 18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSI 77
+V +GN AVL C SW +D +++ + + SS + +
Sbjct: 115 SVTIGNRAVLTCSEHDGSPPSEY--SWFKDGISMLTADAKKTRAFMNSSFTIDPK----- 167
Query: 78 TGNLSVKK 85
+G+L
Sbjct: 168 SGDLIFDP 175
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system;
HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Length = 262
Score = 25.3 bits (55), Expect = 4.1
Identities = 6/40 (15%), Positives = 12/40 (30%), Gaps = 2/40 (5%)
Query: 18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDT 57
+V T L C++ W + +T +
Sbjct: 12 SVFQEETVTLHCEVLHLPGSSST--QWFLNGTATQTSTPS 49
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system;
3.00A {Homo sapiens}
Length = 193
Score = 24.9 bits (54), Expect = 5.0
Identities = 13/65 (20%), Positives = 26/65 (40%), Gaps = 2/65 (3%)
Query: 18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSI 77
N ILG + L + P E + +W+ ++ ++ K + + RL+
Sbjct: 9 NGILGESVTLPLEFP--AGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNF 66
Query: 78 TGNLS 82
T + S
Sbjct: 67 TQSYS 71
>2ens_A Advanced glycosylation END product-specific receptor;
beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 96
Score = 24.3 bits (53), Expect = 5.1
Identities = 10/43 (23%), Positives = 15/43 (34%), Gaps = 13/43 (30%)
Query: 19 VILGNTAVLRCQI-----PSYMSEYIIVTSWIQDDVNIYLNTD 56
V G T L C++ P W++D V + L
Sbjct: 22 VAPGGTVTLTCEVPAQPSPQI--------HWMKDGVPLPLPPS 56
>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system;
1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E
3csp_A 1py9_A
Length = 139
Score = 24.5 bits (53), Expect = 5.2
Identities = 8/42 (19%), Positives = 18/42 (42%)
Query: 19 VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGK 60
++G+ A L C+I + + W + + ++ GK
Sbjct: 18 ALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGK 59
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin
superfamily, integrin-binding, cell adhesion protein;
1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A
1vsc_A
Length = 202
Score = 24.7 bits (53), Expect = 5.8
Identities = 6/74 (8%), Positives = 20/74 (27%), Gaps = 1/74 (1%)
Query: 2 LPVVKQKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTG-GK 60
+ + + ++ + G ++C + + ++ D +
Sbjct: 86 VEIYSFPKDPEIHLSGPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDAD 145
Query: 61 YVVLSSGDLYVQIR 74
L + L V
Sbjct: 146 RKSLETKSLEVTFT 159
>2pnd_A V-SET and immunoglobulin domain containing 4; complement
receptor, IG-like domain, immune system; 1.00A {Mus
musculus} PDB: 2icc_A 2ice_S* 2icf_S*
Length = 119
Score = 24.1 bits (52), Expect = 6.6
Identities = 10/79 (12%), Positives = 32/79 (40%), Gaps = 5/79 (6%)
Query: 19 VILGNTAVLRCQIPSYMSEYIIVTSWI----QDDVNIYLNTDTGGKYVVLSSGDLYVQIR 74
++C ++ W+ D V I+L D+ G ++ + +++
Sbjct: 13 GTWKGDVKIQCIYDPLRGYRQVLVKWLVRHGSDSVTIFLR-DSTGDHIQQAKYRGRLKVS 71
Query: 75 LSITGNLSVKKMKVEEEEE 93
+ G++S++ ++ ++
Sbjct: 72 HKVPGDVSLQINTLQMDDR 90
>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell
immunoglobulin mucin, signaling protein; 1.95A {Mus
musculus} PDB: 3kaa_A*
Length = 109
Score = 24.1 bits (52), Expect = 6.9
Identities = 13/68 (19%), Positives = 22/68 (32%), Gaps = 9/68 (13%)
Query: 19 VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTD----TGGKYVVLSSGDLYVQIR 74
V +G A L C S ++ W + T+ T + V R
Sbjct: 6 VEVGKNAYLPCSYTLPTSGTLVPMCWGKGFCPWSQCTNELLRTDERNVTYQKSS-----R 60
Query: 75 LSITGNLS 82
+ G+L+
Sbjct: 61 YQLKGDLN 68
>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion;
2.40A {Homo sapiens}
Length = 145
Score = 24.4 bits (52), Expect = 7.0
Identities = 12/78 (15%), Positives = 24/78 (30%), Gaps = 9/78 (11%)
Query: 3 PVVKQKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNI-YLNTDT---G 58
+ Q + V+ G T VL+CQ+ + W Y
Sbjct: 34 INLSQDDSQPWTSDETVVAGGTVVLKCQVKDH---EDSSLQWSNPAQQTLYFGEKRALRD 90
Query: 59 GKYVVL--SSGDLYVQIR 74
+ ++ + +L + I
Sbjct: 91 NRIQLVTSTPHELSISIS 108
>3r0n_A Poliovirus receptor-related protein 2; IG-domain, cell-adhesion
molecule, virus entry receptor, STR genomics,
PSI-biology; 1.30A {Homo sapiens}
Length = 128
Score = 24.2 bits (52), Expect = 8.6
Identities = 13/45 (28%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Query: 7 QKYEINVNYEHNVILGNTAVLRCQI-PSYMSEYIIVTSWIQDDVN 50
Q + V E LG T L C + P YI + +W + D
Sbjct: 2 QDVRVQVLPEVRGQLGGTVELPCHLLPPVPGLYISLVTWQRPDAP 46
>3p9v_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati northeast structural genomics
consortium, NESG; 1.78A {Marinobacter aquaeolei}
Length = 161
Score = 23.8 bits (51), Expect = 9.7
Identities = 6/32 (18%), Positives = 13/32 (40%)
Query: 53 LNTDTGGKYVVLSSGDLYVQIRLSITGNLSVK 84
N G + + + GD ++ + L+V
Sbjct: 90 GNGVVSGSWTLSAKGDNATAVKFQTSAELTVP 121
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.133 0.368
Gapped
Lambda K H
0.267 0.0526 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,453,571
Number of extensions: 73414
Number of successful extensions: 177
Number of sequences better than 10.0: 1
Number of HSP's gapped: 176
Number of HSP's successfully gapped: 79
Length of query: 98
Length of database: 6,701,793
Length adjustment: 64
Effective length of query: 34
Effective length of database: 4,914,849
Effective search space: 167104866
Effective search space used: 167104866
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (23.9 bits)