RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5692
         (98 letters)



>d1ow0a1 b.1.1.2 (A:242-342) Immunoglobulin heavy chain alpha
          constant domain 2, CH2-alpha {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 101

 Score = 26.5 bits (58), Expect = 0.33
 Identities = 11/51 (21%), Positives = 18/51 (35%), Gaps = 4/51 (7%)

Query: 19 VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNT----DTGGKYVVLS 65
          ++LG+ A L C +        +  +W        +      D  G Y V S
Sbjct: 15 LLLGSEANLTCTLTGLRDASGVTFTWTPSSGKSAVQGPPERDLCGCYSVSS 65


>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse
          (Mus musculus) [TaxId: 10090]}
          Length = 118

 Score = 26.0 bits (56), Expect = 0.66
 Identities = 6/74 (8%), Positives = 18/74 (24%)

Query: 9  YEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGD 68
          + ++       + G+  ++ C         +          +                 D
Sbjct: 2  WGVSSPKNVQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVD 61

Query: 69 LYVQIRLSITGNLS 82
             + R  + GN+ 
Sbjct: 62 KRFRGRAELMGNMD 75


>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 105

 Score = 24.9 bits (53), Expect = 1.4
 Identities = 13/76 (17%), Positives = 26/76 (34%), Gaps = 3/76 (3%)

Query: 18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSI 77
             +   A L C     + E      + Q +  + L   +G   +     +   +    I
Sbjct: 5  TKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNI---WPEYKNRTIFDI 61

Query: 78 TGNLSVKKMKVEEEEE 93
          T NLS+  + +   +E
Sbjct: 62 TNNLSIVILALRPSDE 77


>d1ks6a_ g.7.1.3 (A:) TGF-beta type II receptor extracellular
          domain {Chicken (Gallus gallus) [TaxId: 9031]}
          Length = 107

 Score = 24.0 bits (52), Expect = 2.9
 Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 2/29 (6%)

Query: 29 CQIPSY--MSEYIIVTSWIQDDVNIYLNT 55
          C I S    +  +    W ++D N+ L T
Sbjct: 26 CNITSICEKNNEVCAAVWRRNDENVTLET 54


>d1m9za_ g.7.1.3 (A:) TGF-beta type II receptor extracellular
          domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 105

 Score = 24.0 bits (52), Expect = 3.0
 Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 2/29 (6%)

Query: 29 CQIPSY--MSEYIIVTSWIQDDVNIYLNT 55
          C I S     + + V  W ++D NI L T
Sbjct: 23 CSITSICEKPQEVCVAVWRKNDENITLET 51


>d2f0ca2 b.108.1.4 (A:17-62) Baseplate protein (bpp), N-terminal
          domain {Lactococcus phage tp901-1 [TaxId: 35345]}
          Length = 46

 Score = 22.2 bits (47), Expect = 5.3
 Identities = 13/39 (33%), Positives = 20/39 (51%)

Query: 45 IQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITGNLSV 83
          I DD+    +  T G  VV  +GD  +  + + TGN+ V
Sbjct: 2  INDDLEAINSELTSGGNVVHKTGDETIAGKKTFTGNVEV 40


>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 110

 Score = 22.5 bits (47), Expect = 9.3
 Identities = 15/77 (19%), Positives = 29/77 (37%), Gaps = 1/77 (1%)

Query: 18 NVILGNTAVLRCQI-PSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLS 76
                TA L CQ   S       +  + QD  N+ LN    GK    S    Y+     
Sbjct: 5  QAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSF 64

Query: 77 ITGNLSVKKMKVEEEEE 93
           + + +++   ++ +++
Sbjct: 65 DSDSWTLRLHNLQIKDK 81


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.133    0.368 

Gapped
Lambda     K      H
   0.267   0.0686    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 357,594
Number of extensions: 14574
Number of successful extensions: 26
Number of sequences better than 10.0: 1
Number of HSP's gapped: 26
Number of HSP's successfully gapped: 10
Length of query: 98
Length of database: 2,407,596
Length adjustment: 60
Effective length of query: 38
Effective length of database: 1,583,796
Effective search space: 60184248
Effective search space used: 60184248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.0 bits)