Query psy5694
Match_columns 129
No_of_seqs 107 out of 225
Neff 5.8
Searched_HMMs 46136
Date Sat Aug 17 00:15:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5694.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5694hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd05852 Ig5_Contactin-1 Fifth 99.7 3.1E-17 6.6E-22 107.9 7.2 73 34-118 1-73 (73)
2 cd05845 Ig2_L1-CAM_like Second 99.7 2.5E-16 5.3E-21 109.9 7.8 78 29-111 13-90 (95)
3 cd05727 Ig2_Contactin-2-like S 99.7 2.8E-16 6.1E-21 109.8 7.7 89 19-111 3-91 (96)
4 cd05724 Ig2_Robo Second immuno 99.7 8.3E-16 1.8E-20 101.3 8.8 84 24-118 2-86 (86)
5 cd05745 Ig3_Peroxidasin Third 99.7 3.9E-16 8.4E-21 101.6 7.1 74 33-118 1-74 (74)
6 cd05738 Ig2_RPTP_IIa_LAR_like 99.6 1.5E-15 3.2E-20 99.2 7.0 74 37-119 1-74 (74)
7 cd05722 Ig1_Neogenin First imm 99.6 4.6E-15 1E-19 100.6 8.8 88 21-118 2-95 (95)
8 cd05726 Ig4_Robo Fhird immunog 99.6 6.1E-15 1.3E-19 99.2 9.2 86 34-127 1-90 (90)
9 cd05851 Ig3_Contactin-1 Third 99.6 5.9E-15 1.3E-19 99.7 8.9 86 20-119 3-88 (88)
10 cd05853 Ig6_Contactin-4 Sixth 99.6 4.4E-15 9.4E-20 101.3 8.3 81 35-122 1-85 (85)
11 cd05762 Ig8_MLCK Eighth immuno 99.6 1.3E-14 2.8E-19 100.2 9.6 89 21-122 3-94 (98)
12 cd04969 Ig5_Contactin_like Fif 99.6 6.1E-15 1.3E-19 95.6 7.3 65 34-107 1-65 (73)
13 cd05728 Ig4_Contactin-2-like F 99.6 9.1E-15 2E-19 97.7 7.4 76 21-107 2-77 (85)
14 cd04968 Ig3_Contactin_like Thi 99.6 1.3E-14 2.8E-19 96.9 8.2 82 23-118 6-87 (88)
15 cd05723 Ig4_Neogenin Fourth im 99.6 9E-15 2E-19 94.7 7.0 71 36-118 1-71 (71)
16 cd05894 Ig_C5_MyBP-C C5 immuno 99.6 1.8E-14 3.8E-19 97.2 8.4 75 27-109 3-80 (86)
17 cd05867 Ig4_L1-CAM_like Fourth 99.6 1.8E-14 3.8E-19 94.2 7.9 75 34-118 1-75 (76)
18 KOG4222|consensus 99.6 7.2E-15 1.6E-19 135.5 8.0 103 12-123 125-227 (1281)
19 cd05865 Ig1_NCAM-1 First immun 99.5 3.8E-14 8.2E-19 97.9 8.8 87 22-118 4-95 (96)
20 cd07693 Ig1_Robo First immunog 99.5 9.5E-14 2.1E-18 92.6 10.2 90 21-118 4-99 (100)
21 cd05735 Ig8_DSCAM Eight immuno 99.5 3.8E-14 8.2E-19 95.8 8.0 78 34-122 1-85 (88)
22 cd05892 Ig_Myotilin_C C-termin 99.5 2.8E-14 6E-19 94.6 6.5 71 37-118 1-75 (75)
23 cd05743 Ig_Perlecan_D2_like Im 99.5 4.5E-14 9.8E-19 92.8 6.8 75 34-118 1-78 (78)
24 cd05725 Ig3_Robo Third immunog 99.5 5.2E-14 1.1E-18 90.1 6.6 69 37-118 1-69 (69)
25 cd05730 Ig3_NCAM-1_like Third 99.5 1.3E-13 2.8E-18 93.2 8.8 79 30-119 14-93 (95)
26 cd05870 Ig5_NCAM-2 Fifth immun 99.5 1.7E-13 3.6E-18 93.7 9.1 78 23-106 6-89 (98)
27 cd05866 Ig1_NCAM-2 First immun 99.5 1.4E-13 3.1E-18 94.6 8.8 76 22-108 4-83 (92)
28 cd05747 Ig5_Titin_like M5, fif 99.5 1.1E-13 2.4E-18 93.4 8.1 77 21-107 6-85 (92)
29 cd04970 Ig6_Contactin_like Six 99.5 1.4E-13 3.1E-18 91.5 8.3 81 35-122 1-85 (85)
30 cd05746 Ig4_Peroxidasin Fourth 99.5 6.7E-14 1.4E-18 90.0 6.0 63 37-108 1-63 (69)
31 cd05740 Ig_CEACAM_D4 Fourth im 99.5 1.6E-13 3.6E-18 93.6 8.2 77 30-119 14-91 (91)
32 cd05893 Ig_Palladin_C C-termin 99.5 7E-14 1.5E-18 92.4 6.1 71 37-118 1-75 (75)
33 cd05857 Ig2_FGFR Second immuno 99.5 2.2E-13 4.7E-18 89.8 8.3 74 30-109 5-79 (85)
34 cd05763 Ig_1 Subgroup of the i 99.5 1.8E-13 3.9E-18 88.9 7.6 73 37-118 1-74 (75)
35 cd05764 Ig_2 Subgroup of the i 99.5 2.8E-13 6E-18 87.5 8.3 65 34-107 1-66 (74)
36 cd05737 Ig_Myomesin_like_C C-t 99.5 1.5E-13 3.3E-18 92.9 7.4 69 29-106 11-83 (92)
37 cd05868 Ig4_NrCAM Fourth immun 99.5 1.8E-13 4E-18 89.9 7.5 75 34-118 1-75 (76)
38 cd05854 Ig6_Contactin-2 Sixth 99.5 3.2E-13 6.9E-18 90.8 8.8 81 35-122 1-85 (85)
39 cd04978 Ig4_L1-NrCAM_like Four 99.5 2.5E-13 5.4E-18 87.7 7.9 75 34-118 1-75 (76)
40 cd05849 Ig1_Contactin-1 First 99.5 3.2E-13 7E-18 92.4 8.9 85 21-117 4-92 (93)
41 cd05732 Ig5_NCAM-1_like Fifth 99.5 1.9E-13 4.1E-18 92.0 7.7 77 25-107 8-88 (96)
42 cd04977 Ig1_NCAM-1_like First 99.5 2E-13 4.4E-18 92.8 7.8 75 22-106 4-83 (92)
43 cd04975 Ig4_SCFR_like Fourth i 99.5 2.2E-13 4.8E-18 95.1 8.0 79 30-119 14-100 (101)
44 cd05760 Ig2_PTK7 Second immuno 99.5 2.8E-13 6E-18 89.1 7.6 73 37-118 1-74 (77)
45 cd05848 Ig1_Contactin-5 First 99.5 4.3E-13 9.3E-18 91.6 8.8 78 21-107 4-85 (94)
46 cd05850 Ig1_Contactin-2 First 99.5 5.5E-13 1.2E-17 91.0 9.2 85 21-116 4-92 (94)
47 cd05873 Ig_Sema4D_like Immunog 99.5 2.7E-13 5.9E-18 92.9 7.2 69 24-102 2-70 (87)
48 cd05736 Ig2_Follistatin_like S 99.4 3.2E-13 6.9E-18 87.8 7.1 74 37-120 1-75 (76)
49 cd05765 Ig_3 Subgroup of the i 99.4 4.9E-13 1.1E-17 87.1 7.9 72 34-110 1-76 (81)
50 cd05744 Ig_Myotilin_C_like Imm 99.4 3.4E-13 7.4E-18 88.5 6.8 71 37-118 1-75 (75)
51 cd05758 Ig5_KIRREL3-like Fifth 99.4 5.4E-13 1.2E-17 91.1 7.8 73 30-107 12-91 (98)
52 cd04972 Ig_TrkABC_d4 Fourth do 99.4 4.1E-13 8.9E-18 90.3 7.0 77 26-109 8-84 (90)
53 cd04974 Ig3_FGFR Third immunog 99.4 6.3E-13 1.4E-17 89.8 7.7 76 34-119 1-90 (90)
54 PF07679 I-set: Immunoglobulin 99.4 8.5E-13 1.8E-17 87.2 8.0 80 20-109 2-84 (90)
55 cd04973 Ig1_FGFR First immunog 99.4 6.2E-13 1.4E-17 87.8 7.2 69 26-106 2-70 (79)
56 cd05869 Ig5_NCAM-1 Fifth immun 99.4 1.2E-12 2.6E-17 89.2 8.0 73 30-107 13-89 (97)
57 cd05734 Ig7_DSCAM Seventh immu 99.4 5.3E-13 1.2E-17 87.6 6.0 65 37-106 1-69 (79)
58 cd05876 Ig3_L1-CAM Third immun 99.4 7.6E-13 1.7E-17 85.6 6.4 70 37-118 1-70 (71)
59 KOG3513|consensus 99.4 9.4E-13 2E-17 121.5 9.3 86 26-123 433-518 (1051)
60 cd05757 Ig2_IL1R_like Second i 99.4 2E-12 4.3E-17 88.9 8.2 74 30-109 6-81 (92)
61 cd04979 Ig_Semaphorin_C Immuno 99.4 2.8E-12 6.1E-17 85.9 8.7 81 30-119 7-87 (89)
62 cd05756 Ig1_IL1R_like First im 99.4 2.3E-12 5.1E-17 88.5 8.1 75 27-107 8-86 (94)
63 cd05858 Ig3_FGFR-2 Third immun 99.4 2.1E-12 4.5E-17 87.0 6.6 75 34-118 1-89 (90)
64 cd04976 Ig2_VEGFR Second immun 99.4 1.7E-12 3.7E-17 84.4 5.7 60 38-106 2-61 (71)
65 KOG4221|consensus 99.4 2.5E-12 5.3E-17 119.6 8.9 89 19-119 141-229 (1381)
66 cd05882 Ig1_Necl-1 First (N-te 99.3 3.6E-12 7.9E-17 88.0 7.5 77 25-106 4-88 (95)
67 cd05891 Ig_M-protein_C C-termi 99.3 3.5E-12 7.6E-17 86.7 7.3 71 29-108 11-85 (92)
68 cd05739 Ig3_RPTP_IIa_LAR_like 99.3 5.6E-12 1.2E-16 81.8 7.4 65 34-110 1-65 (69)
69 cd05864 Ig2_VEGFR-2 Second imm 99.3 1.7E-12 3.8E-17 85.0 4.7 69 37-117 1-69 (70)
70 cd05749 Ig2_Tyro3_like Second 99.3 3.2E-12 6.8E-17 86.0 6.0 71 21-106 1-72 (81)
71 cd05733 Ig6_L1-CAM_like Sixth 99.3 6.2E-12 1.3E-16 82.6 7.2 63 37-106 1-68 (77)
72 cd05859 Ig4_PDGFR-alpha Fourth 99.3 7E-12 1.5E-16 87.3 7.7 78 30-119 14-100 (101)
73 cd05748 Ig_Titin_like Immunogl 99.3 9.4E-12 2E-16 80.4 7.6 63 36-107 1-66 (74)
74 cd05773 Ig8_hNephrin_like Eigh 99.3 1.1E-11 2.5E-16 86.9 8.5 79 33-122 22-108 (109)
75 cd07701 Ig1_Necl-3 First (N-te 99.3 1.6E-11 3.4E-16 84.4 8.2 85 24-118 3-95 (95)
76 cd04967 Ig1_Contactin First Ig 99.3 1.3E-11 2.9E-16 83.0 7.6 68 32-107 17-85 (91)
77 cd05875 Ig6_hNeurofascin_like 99.3 1.5E-11 3.2E-16 81.3 7.6 64 37-107 1-69 (77)
78 cd05731 Ig3_L1-CAM_like Third 99.3 7.8E-12 1.7E-16 79.4 6.0 69 37-118 1-70 (71)
79 cd05871 Ig_Semaphorin_classIII 99.3 2.7E-11 5.9E-16 82.8 8.9 83 29-120 6-90 (91)
80 cd05856 Ig2_FGFRL1-like Second 99.3 9.7E-12 2.1E-16 80.6 5.8 69 30-106 5-73 (82)
81 cd07702 Ig2_VEGFR-1 Second imm 99.3 6.7E-12 1.5E-16 83.0 4.9 64 38-109 2-65 (72)
82 cd05863 Ig2_VEGFR-3 Second imm 99.3 7.3E-12 1.6E-16 81.7 4.7 56 37-105 1-56 (67)
83 cd05752 Ig1_FcgammaR_like Frst 99.3 2.4E-11 5.2E-16 81.0 7.3 74 23-118 5-78 (78)
84 cd05895 Ig_Pro_neuregulin-1 Im 99.3 2.1E-11 4.5E-16 79.3 6.7 69 37-109 1-72 (76)
85 cd05874 Ig6_NrCAM Sixth immuno 99.2 4.9E-11 1.1E-15 78.8 7.4 65 37-108 1-70 (77)
86 cd04971 Ig_TrKABC_d5 Fifth dom 99.2 2.3E-11 4.9E-16 81.5 5.8 60 39-107 3-72 (81)
87 cd05754 Ig3_Perlecan_like Thir 99.2 4.5E-11 9.7E-16 79.2 6.7 75 24-110 7-81 (85)
88 cd05855 Ig_TrkB_d5 Fifth domai 99.2 2.6E-11 5.7E-16 81.6 5.1 61 39-108 3-71 (79)
89 cd05898 Ig5_KIRREL3 Fifth immu 99.2 1.5E-10 3.3E-15 80.9 8.1 72 30-106 12-90 (98)
90 cd05750 Ig_Pro_neuregulin Immu 99.2 7.7E-11 1.7E-15 75.6 6.2 66 38-109 2-71 (75)
91 smart00408 IGc2 Immunoglobulin 99.2 1.9E-10 4E-15 69.0 7.2 62 33-103 1-62 (63)
92 KOG4221|consensus 99.1 1.7E-10 3.6E-15 107.7 9.3 96 19-126 238-333 (1381)
93 cd05753 Ig2_FcgammaR_like Seco 99.1 2.6E-10 5.6E-15 76.4 7.7 79 24-118 5-83 (83)
94 cd05729 Ig2_FGFR_like Second i 99.1 3.2E-10 7E-15 73.5 7.6 69 30-107 5-77 (85)
95 cd05872 Ig_Sema4B_like Immunog 99.1 5.8E-10 1.3E-14 76.2 8.7 63 30-102 7-69 (85)
96 cd05742 Ig1_VEGFR_like First i 99.1 2.5E-10 5.3E-15 75.6 6.0 79 34-118 1-83 (84)
97 KOG3513|consensus 99.1 8.8E-10 1.9E-14 102.1 10.7 97 19-126 332-428 (1051)
98 cd05717 Ig1_Necl-1-3_like Firs 99.0 1.8E-09 4E-14 72.9 8.3 70 30-103 8-85 (95)
99 PHA02785 IL-beta-binding prote 99.0 1.4E-09 3.1E-14 89.3 9.3 79 23-103 225-315 (326)
100 cd05774 Ig_CEACAM_D1 First imm 99.0 2.1E-09 4.6E-14 75.7 8.8 74 25-103 5-93 (105)
101 smart00409 IG Immunoglobulin. 99.0 4.9E-09 1.1E-13 65.6 9.2 66 30-103 5-74 (86)
102 smart00410 IG_like Immunoglobu 99.0 4.9E-09 1.1E-13 65.6 9.2 66 30-103 5-74 (86)
103 cd05861 Ig1_PDGFR-alphabeta Fr 99.0 1.4E-09 3.1E-14 72.7 6.8 81 34-120 1-84 (84)
104 KOG4194|consensus 99.0 1.6E-09 3.5E-14 96.5 8.0 93 19-121 613-706 (873)
105 cd05879 Ig_P0 Immunoglobulin ( 99.0 3.7E-09 8.1E-14 75.6 8.5 81 23-104 2-104 (116)
106 PHA02826 IL-1 receptor-like pr 98.9 9.1E-09 2E-13 81.3 10.5 73 30-107 140-215 (227)
107 cd05741 Ig_CEACAM_D1_like Firs 98.9 7.1E-09 1.5E-13 68.9 7.9 68 34-106 1-82 (92)
108 PF13895 Ig_2: Immunoglobulin 98.9 6.6E-09 1.4E-13 66.1 7.0 75 25-118 6-80 (80)
109 cd07690 Ig1_CD4 First immunogl 98.9 4.4E-09 9.4E-14 72.8 6.3 73 29-106 2-90 (94)
110 cd05751 Ig1_LILRB1_like First 98.9 2.6E-09 5.6E-14 72.4 4.9 79 30-119 12-91 (91)
111 PF00047 ig: Immunoglobulin do 98.8 2.7E-09 5.8E-14 66.5 3.5 58 34-99 1-64 (64)
112 PHA02826 IL-1 receptor-like pr 98.8 2E-08 4.3E-13 79.4 8.2 87 29-121 32-135 (227)
113 cd05897 Ig2_IL1R2_like Second 98.8 2.1E-08 4.6E-13 69.7 7.3 74 30-107 6-82 (95)
114 PHA02785 IL-beta-binding prote 98.8 2.8E-08 6.1E-13 81.6 9.1 88 25-120 128-217 (326)
115 cd05862 Ig1_VEGFR First immuno 98.8 2.1E-08 4.6E-13 67.4 6.7 81 34-120 1-86 (86)
116 cd05713 Ig_MOG_like Immunoglob 98.8 4.4E-08 9.5E-13 66.5 8.3 69 34-103 1-88 (100)
117 cd04983 IgV_TCR_alpha_like Imm 98.8 4.2E-08 9E-13 67.2 7.6 85 30-118 9-108 (109)
118 cd05775 Ig_SLAM-CD84_like_N N- 98.8 6.6E-08 1.4E-12 66.3 8.3 72 32-107 2-87 (97)
119 cd05877 Ig_LP_like Immunoglobu 98.7 6.6E-08 1.4E-12 66.3 7.7 82 33-119 1-103 (106)
120 cd05881 Ig1_Necl-2 First (N-te 98.7 1E-07 2.2E-12 66.3 8.5 70 30-103 8-85 (95)
121 cd00099 IgV Immunoglobulin var 98.7 4.2E-08 9.2E-13 66.3 6.5 71 30-103 2-90 (105)
122 cd05718 Ig1_PVR_like First imm 98.7 1.3E-07 2.7E-12 63.6 8.5 71 35-106 1-88 (98)
123 cd05714 Ig_CSPGs_LP Immunoglob 98.7 1.2E-07 2.7E-12 65.1 7.7 83 33-120 1-104 (106)
124 PF07686 V-set: Immunoglobulin 98.6 2.6E-07 5.7E-12 62.0 8.1 87 26-118 8-114 (114)
125 cd05880 Ig_EVA1 Immunoglobulin 98.6 1.8E-07 4E-12 66.1 7.5 80 23-103 2-102 (115)
126 cd05715 Ig_P0-like Immunoglobu 98.6 4.7E-07 1E-11 63.5 8.4 79 24-103 3-103 (116)
127 cd05896 Ig1_IL1RAPL-1_like Fir 98.6 3E-07 6.5E-12 65.3 7.3 78 23-103 5-93 (104)
128 cd05888 Ig1_Nectin-4_like Frst 98.6 4.7E-07 1E-11 62.4 8.1 79 36-118 2-99 (100)
129 cd05887 Ig1_Nectin-3_like Firs 98.5 9.4E-07 2E-11 61.5 8.5 77 36-118 2-95 (96)
130 cd05878 Ig_Aggrecan_like Immun 98.5 7.1E-07 1.5E-11 62.7 7.8 70 33-103 1-95 (110)
131 cd05759 Ig2_KIRREL3-like Secon 98.5 4.7E-07 1E-11 59.5 6.5 62 37-104 2-70 (82)
132 cd05885 Ig2_Necl-4 Second immu 98.5 9E-07 2E-11 59.9 7.6 64 37-105 2-68 (80)
133 cd05900 Ig_Aggrecan Immunoglob 98.5 1.1E-06 2.3E-11 62.6 8.2 70 33-103 1-97 (112)
134 cd05899 IgV_TCR_beta Immunoglo 98.5 7.2E-07 1.6E-11 61.7 7.2 69 30-103 9-95 (110)
135 cd05712 Ig_Siglec_N Immunoglob 98.5 2.1E-06 4.5E-11 60.7 9.3 80 22-102 2-102 (119)
136 cd04980 IgV_L_kappa Immunoglob 98.5 1.4E-06 3.1E-11 59.9 8.2 74 25-102 7-93 (106)
137 PF13927 Ig_3: Immunoglobulin 98.5 2.3E-07 5.1E-12 57.8 3.9 58 37-101 18-75 (75)
138 cd04984 IgV_L_lambda Immunoglo 98.4 8.2E-07 1.8E-11 60.3 6.7 84 30-118 2-98 (98)
139 cd05846 Ig1_MRC-OX-2_like Firs 98.4 2E-06 4.4E-11 58.5 8.2 79 34-118 1-96 (97)
140 cd05886 Ig1_Nectin-1_like Firs 98.4 3.2E-06 6.8E-11 58.9 9.2 79 36-118 2-98 (99)
141 PHA03376 BARF1; Provisional 98.4 4.7E-06 1E-10 65.5 10.3 98 29-127 21-138 (221)
142 KOG4222|consensus 98.4 4.2E-07 9E-12 85.1 5.0 93 18-124 225-318 (1281)
143 cd00098 IgC Immunoglobulin Con 98.4 1.1E-06 2.4E-11 58.5 5.6 67 33-103 12-85 (95)
144 cd05711 Ig_FcalphaRI Immunoglo 98.3 2.8E-06 6E-11 58.1 7.0 79 30-118 11-94 (94)
145 cd04982 IgV_TCR_gamma Immunogl 98.3 2.6E-06 5.7E-11 59.2 7.0 71 30-102 9-99 (116)
146 cd07705 Ig2_Necl-1 Second immu 98.3 4.1E-06 8.9E-11 56.1 7.4 60 37-103 2-69 (83)
147 cd05860 Ig4_SCFR Fourth immuno 98.3 8.5E-06 1.8E-10 57.6 8.4 67 30-103 14-88 (101)
148 cd05716 Ig_pIgR Immunoglobulin 98.3 5E-06 1.1E-10 56.2 7.0 72 29-103 2-87 (98)
149 KOG4194|consensus 98.2 1.8E-06 3.8E-11 77.4 5.4 98 20-123 505-614 (873)
150 cd05755 Ig2_ICAM-1_like Second 98.2 8.1E-06 1.8E-10 57.4 7.2 80 22-104 5-86 (100)
151 cd05761 Ig2_Necl-1-4_like Seco 98.2 1.2E-05 2.7E-10 53.3 7.4 62 37-103 2-68 (82)
152 cd07700 IgV_CD8_beta Immunoglo 98.2 1E-05 2.2E-10 56.0 7.2 71 29-102 1-94 (107)
153 cd05889 Ig1_DNAM-1_like First 98.1 2.3E-05 5.1E-10 54.4 8.7 69 36-107 2-87 (96)
154 cd05883 Ig2_Necl-2 Second immu 98.1 2.3E-05 5E-10 53.3 8.0 63 37-104 2-68 (82)
155 cd05902 Ig_Neurocan Immunoglob 98.1 1.2E-05 2.5E-10 57.2 5.8 70 33-103 1-95 (110)
156 cd07706 IgV_TCR_delta Immunogl 98.0 2.9E-05 6.3E-10 54.1 7.6 71 30-103 10-95 (116)
157 smart00406 IGv Immunoglobulin 98.0 1.1E-05 2.4E-10 51.3 4.9 62 36-99 1-81 (81)
158 cd05884 Ig2_Necl-3 Second immu 98.0 3.3E-05 7.2E-10 51.9 7.2 62 37-103 2-69 (83)
159 cd05901 Ig_Versican Immunoglob 97.9 6.8E-05 1.5E-09 54.2 8.1 69 34-103 2-102 (117)
160 cd04981 IgV_H Immunoglobulin ( 97.9 6E-05 1.3E-09 53.3 7.7 90 25-118 4-116 (117)
161 PHA02987 Ig domain OX-2-like p 97.9 8.7E-05 1.9E-09 57.8 9.0 89 29-122 25-125 (189)
162 cd00096 Ig Immunoglobulin doma 97.9 3E-05 6.6E-10 45.3 4.7 63 37-103 1-66 (74)
163 cd05771 IgC_Tapasin_R Tapasin- 97.8 0.00023 5E-09 51.1 9.2 70 30-103 49-131 (139)
164 cd05772 IgC_SIRP Signal-regula 97.7 8.6E-05 1.9E-09 52.7 5.9 69 30-102 17-91 (111)
165 cd07697 IgC_TCR_gamma T cell r 97.6 0.00016 3.4E-09 50.3 5.8 67 32-102 14-84 (96)
166 cd05720 Ig_CD8_alpha Immunoglo 97.6 0.00012 2.6E-09 50.6 5.0 68 30-101 2-90 (104)
167 smart00407 IGc1 Immunoglobulin 97.6 0.00023 5E-09 46.3 5.9 64 36-103 1-71 (75)
168 cd07699 IgC_L Immunoglobulin C 97.5 0.00014 3.1E-09 50.2 4.5 68 32-103 15-89 (100)
169 cd07696 IgC_CH3 CH3 domain (th 97.5 0.00021 4.6E-09 49.4 5.2 68 31-102 11-85 (96)
170 cd05770 IgC_beta2m Class I maj 97.5 0.00032 7E-09 48.4 6.0 66 32-102 13-82 (93)
171 PF07654 C1-set: Immunoglobuli 97.5 0.00038 8.2E-09 45.9 6.2 64 33-103 7-77 (83)
172 cd05768 IgC_CH4 CH4 domain (fo 97.4 0.0003 6.5E-09 49.0 4.9 67 32-102 14-90 (102)
173 cd05769 IgC_TCR_beta T cell re 97.3 0.00042 9E-09 49.7 5.0 68 33-103 17-92 (115)
174 cd07689 Ig2_VCAM-1 Second immu 97.3 0.00067 1.5E-08 47.9 5.9 71 31-103 12-86 (99)
175 cd05766 IgC_MHC_II_beta Class 97.3 0.001 2.2E-08 45.6 6.5 65 32-103 12-83 (94)
176 cd07698 IgC_MHC_I_alpha3 Class 97.3 0.0013 2.9E-08 44.4 6.5 67 34-103 14-83 (93)
177 cd05847 IgC_CH2_IgE CH2 domain 97.2 0.00088 1.9E-08 46.1 5.4 66 33-102 13-85 (94)
178 KOG1480|consensus 97.1 0.00015 3.2E-09 66.4 0.1 81 16-104 127-207 (909)
179 cd05771 IgC_Tapasin_R Tapasin- 97.0 0.00055 1.2E-08 49.1 3.1 38 80-122 2-39 (139)
180 PF08205 C2-set_2: CD80-like C 97.0 0.0031 6.7E-08 41.5 6.2 68 34-106 14-87 (89)
181 cd05767 IgC_MHC_II_alpha Class 97.0 0.0022 4.7E-08 44.2 5.5 63 33-102 14-83 (94)
182 cd04986 IgC_CH2 CH2 domain (se 97.0 0.0023 4.9E-08 44.9 5.6 69 31-103 16-89 (99)
183 cd04985 IgC_CH1 CH1 domain (fi 97.0 0.0014 3.1E-08 45.1 4.4 67 32-102 14-86 (95)
184 cd07703 Ig2_Nectin-2_like Seco 96.6 0.015 3.2E-07 40.2 7.2 63 36-103 17-82 (95)
185 cd05719 Ig2_PVR_like Second im 96.4 0.013 2.7E-07 40.4 5.9 63 36-103 17-82 (95)
186 cd07692 Ig_CD3_epsilon Immunog 96.2 0.016 3.6E-07 37.9 5.1 52 32-102 5-56 (65)
187 PF07354 Sp38: Zona-pellucida- 96.1 0.0072 1.6E-07 49.4 4.0 47 52-103 13-60 (271)
188 cd07704 Ig2_Nectin-3-4_like Se 95.8 0.033 7.2E-07 38.9 5.7 70 30-104 12-85 (97)
189 PHA02865 MHC-like TNF binding 94.8 0.065 1.4E-06 45.2 5.4 65 36-102 216-303 (338)
190 PHA02633 hypothetical protein; 94.7 0.032 7E-07 36.4 2.6 40 77-121 16-55 (63)
191 cd07694 Ig2_CD4 Second immunog 94.6 0.22 4.8E-06 34.4 6.8 63 27-100 8-71 (88)
192 PF08204 V-set_CD47: CD47 immu 92.5 0.3 6.6E-06 36.0 4.9 72 30-103 23-108 (130)
193 cd05721 IgV_CTLA-4 Immunoglobu 92.2 0.58 1.2E-05 33.8 6.0 68 30-100 9-94 (115)
194 KOG4597|consensus 92.2 0.28 6.1E-06 43.4 5.1 76 30-110 207-286 (560)
195 cd07691 Ig_CD3_gamma_delta Imm 90.6 0.44 9.6E-06 31.6 3.7 49 34-101 6-54 (69)
196 PHA02982 hypothetical protein; 89.3 1.2 2.6E-05 35.9 5.8 70 30-102 35-122 (251)
197 KOG3515|consensus 89.0 0.32 7E-06 44.9 2.8 53 51-106 431-484 (741)
198 PHA03052 Hypothetical protein; 89.0 1.4 3E-05 29.2 5.0 48 28-75 6-54 (69)
199 KOG3515|consensus 85.2 1.2 2.6E-05 41.3 4.2 67 30-106 18-84 (741)
200 PF06328 Lep_receptor_Ig: Ig-l 74.6 13 0.00028 25.3 5.6 69 24-98 9-80 (89)
201 PHA03112 IL-18 binding protein 73.3 27 0.00058 26.2 7.4 71 32-103 36-119 (141)
202 PHA02914 Immunoglobulin-like d 73.0 16 0.00036 32.1 7.0 64 30-100 22-101 (500)
203 KOG3611|consensus 68.1 7 0.00015 36.3 4.0 67 31-102 566-634 (737)
204 PHA02914 Immunoglobulin-like d 67.6 16 0.00034 32.2 5.7 81 21-102 266-368 (500)
205 PF11465 Receptor_2B4: Natural 66.9 9.7 0.00021 27.3 3.7 38 70-109 61-99 (108)
206 PHA03042 CD47-like protein; Pr 60.8 30 0.00066 28.7 6.0 65 30-103 27-93 (286)
207 PHA03282 envelope glycoprotein 59.9 24 0.00052 31.5 5.5 40 77-119 122-161 (540)
208 PHA03270 envelope glycoprotein 48.9 1.8E+02 0.004 25.8 9.1 27 77-104 180-206 (466)
209 PHA03189 UL14 tegument protein 47.8 78 0.0017 26.9 6.5 91 19-110 52-163 (348)
210 TIGR02375 pseudoazurin pseudoa 46.7 65 0.0014 22.9 5.2 39 79-125 55-93 (116)
211 PHA03270 envelope glycoprotein 46.6 1.3E+02 0.0029 26.6 7.9 72 30-101 230-306 (466)
212 PF05083 LST1: LST-1 protein; 45.7 16 0.00035 24.4 1.8 17 88-104 58-74 (74)
213 PHA03269 envelope glycoprotein 40.3 1.8E+02 0.0039 26.4 7.8 78 22-101 331-415 (566)
214 PHA03282 envelope glycoprotein 38.6 27 0.00058 31.3 2.5 20 80-100 334-353 (540)
215 PHA03286 envelope glycoprotein 38.4 34 0.00073 30.4 3.1 25 75-100 302-327 (492)
216 PHA03273 envelope glycoprotein 36.7 2.1E+02 0.0045 25.7 7.6 71 30-100 246-322 (486)
217 KOG1480|consensus 34.4 56 0.0012 31.0 4.0 80 17-99 23-107 (909)
218 PF00900 Ribosomal_S4e: Riboso 33.4 77 0.0017 21.0 3.6 36 70-106 3-40 (77)
219 PHA03271 envelope glycoprotein 32.2 2.3E+02 0.005 25.2 7.2 72 30-101 256-333 (490)
220 PHA03269 envelope glycoprotein 29.0 1.1E+02 0.0024 27.6 4.8 36 70-106 275-315 (566)
221 PF04296 DUF448: Protein of un 28.9 61 0.0013 21.2 2.5 29 72-100 18-46 (78)
222 PF05790 C2-set: Immunoglobuli 27.0 1.9E+02 0.0042 19.1 7.9 22 78-100 42-63 (80)
223 PRK10626 hypothetical protein; 23.0 72 0.0016 25.9 2.4 16 70-85 45-60 (239)
224 COG3698 Predicted periplasmic 22.8 2.4E+02 0.0052 23.0 5.3 53 33-85 76-130 (250)
225 PRK12700 flgH flagellar basal 22.5 51 0.0011 26.4 1.4 12 75-86 153-164 (230)
226 PF01453 B_lectin: D-mannose b 22.4 1.1E+02 0.0024 21.2 3.0 33 54-87 4-37 (114)
227 PF02480 Herpes_gE: Alphaherpe 21.6 47 0.001 29.0 1.1 22 78-100 268-289 (439)
228 PRK12407 flgH flagellar basal 21.3 56 0.0012 26.0 1.4 12 75-86 143-154 (221)
229 PHA03240 envelope glycoprotein 21.3 1.1E+02 0.0024 24.8 3.1 89 11-106 16-130 (258)
230 PRK12788 flgH flagellar basal 20.2 61 0.0013 26.1 1.4 12 75-86 157-168 (234)
No 1
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.71 E-value=3.1e-17 Score=107.94 Aligned_cols=73 Identities=22% Similarity=0.380 Sum_probs=61.1
Q ss_pred CCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecccCCeEEecccc
Q psy5694 34 GNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQ 113 (129)
Q Consensus 34 GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~ltge~k~S~~~ 113 (129)
|++|+|.|.+.+.|+ +.++|++++..|. .++||.++++|.|.|.+++.+|.| .|+|.|.|.+ |+... .
T Consensus 1 G~~~~l~C~~~g~P~---p~v~W~k~~~~l~----~~~r~~~~~~g~L~I~~v~~~D~G-~Y~C~A~N~~-G~~~~---~ 68 (73)
T cd05852 1 GGRVIIECKPKAAPK---PKFSWSKGTELLV----NNSRISIWDDGSLEILNITKLDEG-SYTCFAENNR-GKANS---T 68 (73)
T ss_pred CCeEEEEEecceeCC---CEEEEEeCCEecc----cCCCEEEcCCCEEEECcCChhHCE-EEEEEEECCC-CceeE---E
Confidence 789999999998874 6799999987663 357999999999999999999997 9999999999 66433 3
Q ss_pred eEEEE
Q psy5694 114 TRLSI 118 (129)
Q Consensus 114 ~~L~V 118 (129)
+.|+|
T Consensus 69 ~~l~~ 73 (73)
T cd05852 69 GVLSV 73 (73)
T ss_pred EEEEC
Confidence 46653
No 2
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.67 E-value=2.5e-16 Score=109.87 Aligned_cols=78 Identities=19% Similarity=0.289 Sum_probs=65.0
Q ss_pred eEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecccCCeEE
Q psy5694 29 HNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQ 108 (129)
Q Consensus 29 ~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~ltge~k 108 (129)
+.|.+|++++|.|..|.+.++ +.+.|++++..+. ..++|+.+.++|+|+|+||+.+|.|..|.|.|.|..+++.+
T Consensus 13 v~V~eG~~~~L~C~pP~g~P~--P~i~W~~~~~~~i---~~~~Ri~~~~~GnL~fs~v~~~D~g~~Y~C~a~~~~~~~~~ 87 (95)
T cd05845 13 VEVEEGDSVVLPCNPPKSAVP--LRIYWMNSDLLHI---TQDERVSMGQNGNLYFANVEEQDSHPDYICHAHFPGLRTIV 87 (95)
T ss_pred eEEecCCCEEEEecCCCCCCC--CEEEEECCCCccc---cccccEEECCCceEEEEEEehhhCCCCeEEEEEcccccceE
Confidence 389999999999997666443 6799998873322 24789999999999999999999986799999999988866
Q ss_pred ecc
Q psy5694 109 ASV 111 (129)
Q Consensus 109 ~S~ 111 (129)
.+.
T Consensus 88 ~~~ 90 (95)
T cd05845 88 QKE 90 (95)
T ss_pred ecC
Confidence 665
No 3
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.66 E-value=2.8e-16 Score=109.75 Aligned_cols=89 Identities=20% Similarity=0.421 Sum_probs=70.1
Q ss_pred eeeeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEE
Q psy5694 19 QKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCR 98 (129)
Q Consensus 19 q~y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~ 98 (129)
..|..+..+.+.|.+|+.|+|.|..|.+.++ +.+.|++++..+... ....+++..++|+|+|++|+.+|.| .|.|.
T Consensus 3 ~~f~~~~~~~~~v~eG~~~~L~C~pP~g~P~--p~~~W~k~~~~~~~~-~d~r~~~~~~~G~L~fs~v~~~D~g-~Y~C~ 78 (96)
T cd05727 3 DEFPLEERDEVKVKEGWGVVLFCDPPPHYPD--LSYRWLLNEFPNFIP-EDGRRFVSQTNGNLYIAKVEASDRG-NYSCF 78 (96)
T ss_pred cccCcCCcCceeeeeCCcEEEeeCCCCCCCC--CEEEEEECCcccccc-cCCCeEEeCCCCcEEEeecCHhhCc-eeEEE
Confidence 3566666666589999999999999988654 679999998543211 2345666667999999999999997 99999
Q ss_pred eecccCCeEEecc
Q psy5694 99 TVNKITGESQASV 111 (129)
Q Consensus 99 a~N~ltge~k~S~ 111 (129)
|+|..+++.+.+.
T Consensus 79 A~n~~~~~~~~~~ 91 (96)
T cd05727 79 VSSPSSTKSVFSK 91 (96)
T ss_pred EEecccCCcccCC
Confidence 9999988866665
No 4
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.65 E-value=8.3e-16 Score=101.29 Aligned_cols=84 Identities=29% Similarity=0.501 Sum_probs=66.3
Q ss_pred eeeeeeEEEeCCeEEEEeeCC-CCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecc
Q psy5694 24 NVNYEHNVILGNTAVLRCQIP-SYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNK 102 (129)
Q Consensus 24 ~v~~~~~V~~GntAvL~C~vp-~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~ 102 (129)
++++. .+.+|++|.|.|.++ +.| .+.+.|++++..+.. .+.++.+.++|.|.|.+++.+|+| .|+|.|.|.
T Consensus 2 ~p~~~-~~~~G~~v~l~C~~~~g~p---~p~i~W~k~g~~~~~---~~~~~~~~~~~~L~I~~~~~~D~G-~Y~C~a~N~ 73 (86)
T cd05724 2 EPSDT-QVAVGEMAVLECSPPRGHP---EPTVSWRKDGQPLNL---DNERVRIVDDGNLLIAEARKSDEG-TYKCVATNM 73 (86)
T ss_pred CCccE-EEeCCCCEEEEEECCCCCC---CCEEEEEECCEECCC---CCCCEEEccCCEEEEeECCcccCE-EEEEEEEec
Confidence 34556 889999999999985 444 357899999977743 356888888999999999999997 999999999
Q ss_pred cCCeEEecccceEEEE
Q psy5694 103 ITGESQASVFQTRLSI 118 (129)
Q Consensus 103 ltge~k~S~~~~~L~V 118 (129)
. |.. .|. .+.|.|
T Consensus 74 ~-G~~-~s~-~~~l~V 86 (86)
T cd05724 74 V-GER-ESA-AARLSV 86 (86)
T ss_pred c-Cce-eee-eEEEEC
Confidence 8 552 343 556654
No 5
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.65 E-value=3.9e-16 Score=101.65 Aligned_cols=74 Identities=26% Similarity=0.498 Sum_probs=61.4
Q ss_pred eCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecccCCeEEeccc
Q psy5694 33 LGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVF 112 (129)
Q Consensus 33 ~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~ltge~k~S~~ 112 (129)
+|++|.|.|.+.+.|+ |.++|++++..+. .+.++.+.++|.|.|.+++.+|+| .|+|.|.|.+ |+...+
T Consensus 1 eG~~v~l~C~~~g~P~---p~i~W~k~g~~~~----~~~~~~~~~~~~L~I~~v~~~D~G-~Y~C~A~N~~-G~~~~~-- 69 (74)
T cd05745 1 EGQTVDFLCEAQGYPQ---PVIAWTKGGSQLS----VDRRHLVLSSGTLRISRVALHDQG-QYECQAVNIV-GSQRTV-- 69 (74)
T ss_pred CCCeEEEEeECCEecC---CEEEEEECCEECC----CCCCeEEccCCeEEEeeCCHHhCE-EEEEEEEeCC-CceeEE--
Confidence 5999999999998874 6799999997764 346788889999999999999998 9999999998 664443
Q ss_pred ceEEEE
Q psy5694 113 QTRLSI 118 (129)
Q Consensus 113 ~~~L~V 118 (129)
+.|.|
T Consensus 70 -~~L~V 74 (74)
T cd05745 70 -AQLTV 74 (74)
T ss_pred -EEEeC
Confidence 35543
No 6
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.62 E-value=1.5e-15 Score=99.19 Aligned_cols=74 Identities=23% Similarity=0.389 Sum_probs=61.2
Q ss_pred EEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecccCCeEEecccceEE
Q psy5694 37 AVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRL 116 (129)
Q Consensus 37 AvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~ltge~k~S~~~~~L 116 (129)
|+|.|.+.+.|. |.++|++|+..|... .++||.+.++|.|.|.+++.+|+| .|+|.|.|.+ |. ..|. .+.|
T Consensus 1 a~l~C~~~G~P~---p~v~W~k~~~~~~~~--~~~~~~~~~~g~L~i~~~~~~D~G-~Y~C~a~N~~-G~-~~s~-~a~l 71 (74)
T cd05738 1 ATMLCAASGNPD---PEITWFKDFLPVDTT--SNGRIKQLRSGALQIENSEESDQG-KYECVATNSA-GT-RYSA-PANL 71 (74)
T ss_pred CEEEEEEeEecC---CEEEEEECCEECccC--CCCCEEEcCCcEEEECCCChhhCE-EEEEEEECCC-Cc-eEcc-cEEE
Confidence 689999988874 689999999777431 457999999999999999999997 9999999998 55 3454 6788
Q ss_pred EEe
Q psy5694 117 SIT 119 (129)
Q Consensus 117 ~V~ 119 (129)
+|+
T Consensus 72 ~v~ 74 (74)
T cd05738 72 YVR 74 (74)
T ss_pred EEC
Confidence 874
No 7
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.61 E-value=4.6e-15 Score=100.59 Aligned_cols=88 Identities=22% Similarity=0.340 Sum_probs=71.1
Q ss_pred eeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEecc-----CCCCCCcce
Q psy5694 21 YEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNA-----TPNDGYKSY 95 (129)
Q Consensus 21 y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv-----~~~D~g~~Y 95 (129)
|..+|++. .+.+|++++|.|.+.+.|+ +.+.|++|+..|... .+.++.++++|.|.|.++ +.+|+| .|
T Consensus 2 f~~~P~~~-~~~~g~~v~l~C~v~g~P~---p~i~W~k~g~~l~~~--~~~~~~~~~~~~l~i~~v~~~~~~~~D~G-~Y 74 (95)
T cd05722 2 FLSEPSDI-VAVRGGPVVLNCSAEGEPP---PKIEWKKDGVLLNLV--SDERRQQLPNGSLLITSVVHSKHNKPDEG-FY 74 (95)
T ss_pred cEECCCCe-EEcCCCCEEEeeecccCCC---CEEEEEECCeECccc--cCcceEEccCCeEEEeeeeccCCCCCcCE-EE
Confidence 66788888 8999999999999988773 678999999777542 345688889999999998 588997 99
Q ss_pred EEEeecc-cCCeEEecccceEEEE
Q psy5694 96 RCRTVNK-ITGESQASVFQTRLSI 118 (129)
Q Consensus 96 ~C~a~N~-ltge~k~S~~~~~L~V 118 (129)
+|.|.|. + |+. .|. .++|+|
T Consensus 75 ~C~a~N~~~-G~~-~s~-~~~l~v 95 (95)
T cd05722 75 QCVAQNDSL-GSI-VSR-TARLTV 95 (95)
T ss_pred EEEEECCcc-CcE-EEe-eeEEeC
Confidence 9999999 7 663 344 566654
No 8
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.61 E-value=6.1e-15 Score=99.23 Aligned_cols=86 Identities=21% Similarity=0.389 Sum_probs=68.2
Q ss_pred CCeEEEEeeCCCCCCCceeEeEEeecce-ee-ecc--cCCCceEEEccCccEEEeccCCCCCCcceEEEeecccCCeEEe
Q psy5694 34 GNTAVLRCQIPSYMSEYIIVTSWIQDDV-NI-YLN--TDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQA 109 (129)
Q Consensus 34 GntAvL~C~vp~~~~~~v~v~sW~~d~~-~i-~~~--~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~ltge~k~ 109 (129)
|.+|.|.|.+.+.|. +.+.|.+++. .+ .+. ....+||.+.++|.|.|.|++.+|+| .|.|.|.|.. |+.
T Consensus 1 G~~v~L~C~~~g~P~---p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~~L~I~~v~~~D~G-~Y~C~a~N~~-G~~-- 73 (90)
T cd05726 1 GRTVTFQCEATGNPQ---PAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVG-YYICQTLNVA-GSI-- 73 (90)
T ss_pred CCEEEEEEECCccCC---CEEEEEeCCCcceeecccCCCCCCeEEECCCCeEEEeeCChhhCE-EEEEEEEcCC-Cce--
Confidence 789999999988774 5789999873 22 211 12357999999999999999999998 9999999998 664
Q ss_pred cccceEEEEecCCCCCCC
Q psy5694 110 SVFQTRLSITGKLKSLCT 127 (129)
Q Consensus 110 S~~~~~L~V~ep~~~~~~ 127 (129)
+. .+.|.|.++...-|+
T Consensus 74 ~~-~~~l~V~~~~~~~~~ 90 (90)
T cd05726 74 LT-KAYLEVTDVIADRPP 90 (90)
T ss_pred EE-EEEEEEeecccCCCC
Confidence 33 569999988776664
No 9
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.60 E-value=5.9e-15 Score=99.67 Aligned_cols=86 Identities=20% Similarity=0.318 Sum_probs=68.1
Q ss_pred eeeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEe
Q psy5694 20 KYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRT 99 (129)
Q Consensus 20 ~y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a 99 (129)
.+.+.+.+. .+.+|+.+.|.|.+.+.|. +.++|.+++..+.+ +.++. ..++.|.|.+++.+|+| .|.|.|
T Consensus 3 ~i~~~~~~~-~~~~G~~v~l~C~~~G~P~---P~v~W~k~~~~~~~----~~~~~-~~~~~L~I~~v~~~D~G-~Y~C~A 72 (88)
T cd05851 3 DINVKFKDT-YALKGQNVTLECFALGNPV---PVIRWRKILEPMPA----TAEIS-MSGAVLKIFNIQPEDEG-TYECEA 72 (88)
T ss_pred ceEEccccE-EEeCCCcEEEEEEecccCC---CEEEEEECCcCCCC----CCEEe-cCCCEEEECcCChhhCE-EEEEEE
Confidence 456677788 9999999999999998884 67999999866632 34543 35678999999999998 999999
Q ss_pred ecccCCeEEecccceEEEEe
Q psy5694 100 VNKITGESQASVFQTRLSIT 119 (129)
Q Consensus 100 ~N~ltge~k~S~~~~~L~V~ 119 (129)
.|.+ |+... .++|.|+
T Consensus 73 ~N~~-G~~~~---~~~l~V~ 88 (88)
T cd05851 73 ENIK-GKDKH---QARVYVQ 88 (88)
T ss_pred EcCC-CceEE---EEEEEEC
Confidence 9999 66433 4577764
No 10
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.60 E-value=4.4e-15 Score=101.30 Aligned_cols=81 Identities=23% Similarity=0.350 Sum_probs=63.3
Q ss_pred CeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEE----ccCccEEEeccCCCCCCcceEEEeecccCCeEEec
Q psy5694 35 NTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVV----LSSGDLYVFNATPNDGYKSYRCRTVNKITGESQAS 110 (129)
Q Consensus 35 ntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~v----lpsG~L~I~nv~~~D~g~~Y~C~a~N~ltge~k~S 110 (129)
++|+|.|.+.+.+. ....+.|++|++.|... ..++||.+ ..+|.|.|+|++.+|+| .|.|.|.|.+ ++. +
T Consensus 1 ~~~~l~C~v~~d~~-l~~~~~W~~dg~~i~~~-~~~~~~~~~~~~~~~~~L~I~nv~~~dsG-~YtC~a~n~~-~~~--~ 74 (85)
T cd05853 1 ESIVLPCQVSHDHS-LDIVFTWSFNGHLIDFQ-KDGDHFERVGGQDSAGDLMIRSIQLKHAG-KYVCMVQTSV-DKL--S 74 (85)
T ss_pred CcEEEEEEeccCCC-CCcEEEEEECCEECccc-CCCccEEEeccCCCCCcEEEecCCHHHCE-EEEEEEEccc-Cce--E
Confidence 47899999976432 23568999999888532 34568877 36799999999999997 9999999998 553 4
Q ss_pred ccceEEEEecCC
Q psy5694 111 VFQTRLSITGKL 122 (129)
Q Consensus 111 ~~~~~L~V~ep~ 122 (129)
. .|.|+|..|+
T Consensus 75 a-~a~L~V~~pP 85 (85)
T cd05853 75 A-AADLIVRGPP 85 (85)
T ss_pred E-EEEEEEecCC
Confidence 4 5699999874
No 11
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.59 E-value=1.3e-14 Score=100.15 Aligned_cols=89 Identities=21% Similarity=0.265 Sum_probs=72.5
Q ss_pred eeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEc---cCccEEEeccCCCCCCcceEE
Q psy5694 21 YEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVL---SSGDLYVFNATPNDGYKSYRC 97 (129)
Q Consensus 21 y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vl---psG~L~I~nv~~~D~g~~Y~C 97 (129)
|...+++. .|..|+.+.|.|.+.+.|+ +.+.|+||+..|.+ +.|+.+. .++.|.|.+++.+|.| .|.|
T Consensus 3 ~~~~p~~~-~v~~G~~v~l~C~~~G~p~---p~v~W~kdg~~l~~----~~~~~~~~~~~~s~L~I~~~~~~D~G-~Ytc 73 (98)
T cd05762 3 IIQFPEDM-KVRAGESVELFCKVTGTQP---ITCTWMKFRKQIQE----GEGIKIENTENSSKLTITEGQQEHCG-CYTL 73 (98)
T ss_pred eEECCcCE-EEECCCEEEEEEEEcccCC---CceEEEECCEEecC----CCcEEEEecCCeeEEEECCCChhhCE-EEEE
Confidence 45566777 8999999999999987774 57999999988843 4577765 3567999999999998 9999
Q ss_pred EeecccCCeEEecccceEEEEecCC
Q psy5694 98 RTVNKITGESQASVFQTRLSITGKL 122 (129)
Q Consensus 98 ~a~N~ltge~k~S~~~~~L~V~ep~ 122 (129)
.|.|.+ |+... .+.|.|.+++
T Consensus 74 ~a~N~~-G~~~~---~~~l~V~~~P 94 (98)
T cd05762 74 EVENKL-GSRQA---QVNLTVVDKP 94 (98)
T ss_pred EEEcCC-CceeE---EEEEEEecCC
Confidence 999999 77444 4589998775
No 12
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.58 E-value=6.1e-15 Score=95.55 Aligned_cols=65 Identities=20% Similarity=0.414 Sum_probs=56.7
Q ss_pred CCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecccCCeE
Q psy5694 34 GNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGES 107 (129)
Q Consensus 34 GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~ltge~ 107 (129)
|+++.|.|.+-+.|+ +.++|++++..|. .+.|+.+.++|.|.|.+|+.+|+| .|+|.|.|.+ |..
T Consensus 1 G~~v~L~C~~~g~P~---p~v~W~k~~~~~~----~~~~~~~~~~~~L~i~~v~~~D~G-~Y~C~a~N~~-G~~ 65 (73)
T cd04969 1 GGDVIIECKPKAAPK---PTISWSKGTELLT----NSSRICIWPDGSLEILNVTKSDEG-KYTCFAENFF-GKA 65 (73)
T ss_pred CCeEEEEEeeeEcCC---CEEEEEECCEEcc----cCCCEEECCCCeEEEccCChhHCE-EEEEEEECCC-Cce
Confidence 789999999877764 5799999997774 357899999999999999999998 9999999999 663
No 13
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.57 E-value=9.1e-15 Score=97.74 Aligned_cols=76 Identities=17% Similarity=0.325 Sum_probs=64.1
Q ss_pred eeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEee
Q psy5694 21 YEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTV 100 (129)
Q Consensus 21 y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~ 100 (129)
|...+++. .+..|++|.|.|.+.+.|. +.+.|++++..|. .++++.+ .+|.|.|.+++.+|+| .|+|.|.
T Consensus 2 ~~~~p~~~-~~~~G~~~~l~C~~~g~p~---p~v~W~k~g~~~~----~~~~~~~-~~~~L~i~~~~~~D~G-~Y~C~a~ 71 (85)
T cd05728 2 WLKVISDT-EADIGSSLRWECKASGNPR---PAYRWLKNGQPLA----SENRIEV-EAGDLRITKLSLSDSG-MYQCVAE 71 (85)
T ss_pred ccccCCcc-EEcCCCcEEEEEEeeEeCC---CEEEEEECCEECC----CCCeEEE-eCCEEEEeeCCHHHCE-EEEEEEE
Confidence 55677788 9999999999999988874 6799999997773 2456655 6889999999999997 9999999
Q ss_pred cccCCeE
Q psy5694 101 NKITGES 107 (129)
Q Consensus 101 N~ltge~ 107 (129)
|.+ |..
T Consensus 72 N~~-G~~ 77 (85)
T cd05728 72 NKH-GTI 77 (85)
T ss_pred CCC-CeE
Confidence 998 664
No 14
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.57 E-value=1.3e-14 Score=96.93 Aligned_cols=82 Identities=18% Similarity=0.233 Sum_probs=64.0
Q ss_pred EeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecc
Q psy5694 23 INVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNK 102 (129)
Q Consensus 23 ~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~ 102 (129)
..+++. .+.+|.+|.|.|.+.+.|. +.++|.+++..+.+ ..++. ..+|.|.|.+++.+|+| .|+|.|.|.
T Consensus 6 ~~p~~~-~~~~g~~v~l~C~~~g~P~---p~v~W~k~~~~~~~----~~~~~-~~~~~L~i~~v~~~D~G-~Y~C~a~N~ 75 (88)
T cd04968 6 VFPKDT-YALKGQNVTLECFALGNPV---PQIKWRKVDGSMPS----SAEIS-MSGAVLKIPNIQFEDEG-TYECEAENI 75 (88)
T ss_pred ECCCce-EEeCCCcEEEEEEeeEeCC---CEEEEEECCCcCCC----ccEEE-EeCCEEEECCCCcccCE-EEEEEEEEC
Confidence 445666 8899999999999987774 67999998855532 23332 67899999999999997 999999999
Q ss_pred cCCeEEecccceEEEE
Q psy5694 103 ITGESQASVFQTRLSI 118 (129)
Q Consensus 103 ltge~k~S~~~~~L~V 118 (129)
+ |.... .++|+|
T Consensus 76 ~-G~~~~---~~~l~V 87 (88)
T cd04968 76 K-GKDTH---QGRIYV 87 (88)
T ss_pred C-CcEEE---EEEEEE
Confidence 8 66433 447776
No 15
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.57 E-value=9e-15 Score=94.75 Aligned_cols=71 Identities=20% Similarity=0.432 Sum_probs=58.1
Q ss_pred eEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecccCCeEEecccceE
Q psy5694 36 TAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTR 115 (129)
Q Consensus 36 tAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~ltge~k~S~~~~~ 115 (129)
.+.|.|.+.+.|+ |.++|++++..+.+ +.++.+..+|.|.|.+++.+|+| .|+|.|.|.+ |+...+ +.
T Consensus 1 ~v~l~C~~~G~P~---p~v~W~k~g~~~~~----~~~~~~~~~~~l~i~~v~~~D~G-~Y~C~A~N~~-G~~~~~---~~ 68 (71)
T cd05723 1 DVIFECEVTGKPT---PTVKWVKNGDMVIP----SDYFKIVKEHNLQVLGLVKSDEG-FYQCIAENDV-GNVQAS---AQ 68 (71)
T ss_pred CEEEEEEEEEeCC---CEEEEEECCeECCC----CCCEEEEecCCEEEEcCCcccCE-EEEEEEEcCC-CEEEEE---EE
Confidence 3789999988874 67999999977643 46788889999999999999997 9999999999 774433 36
Q ss_pred EEE
Q psy5694 116 LSI 118 (129)
Q Consensus 116 L~V 118 (129)
|.|
T Consensus 69 L~V 71 (71)
T cd05723 69 LII 71 (71)
T ss_pred EEC
Confidence 654
No 16
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.56 E-value=1.8e-14 Score=97.20 Aligned_cols=75 Identities=24% Similarity=0.273 Sum_probs=61.7
Q ss_pred eeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEcc---CccEEEeccCCCCCCcceEEEeeccc
Q psy5694 27 YEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLS---SGDLYVFNATPNDGYKSYRCRTVNKI 103 (129)
Q Consensus 27 ~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlp---sG~L~I~nv~~~D~g~~Y~C~a~N~l 103 (129)
+.+.|..|+++.|.|.+.+.|+ |.++|++++..|.. .++||.+.. .+.|.|.+++.+|+| .|.|.|.|.+
T Consensus 3 ~~~~v~~G~~v~l~c~~~G~P~---P~v~W~k~~~~i~~---~~~r~~~~~~~~~~~L~I~~~~~~D~G-~Y~c~a~N~~ 75 (86)
T cd05894 3 NTIVVVAGNKLRLDVPISGEPA---PTVTWSRGDKAFTE---TEGRVRVESYKDLSSFVIEGAEREDEG-VYTITVTNPV 75 (86)
T ss_pred CEEEEEcCCEEEEEeeEeecCC---CeEEEEECCEECcc---CCCeEEEEEcCCeEEEEECCCccCcCE-EEEEEEEeCC
Confidence 3458899999999999998874 68999999988753 246787753 367999999999997 9999999999
Q ss_pred CCeEEe
Q psy5694 104 TGESQA 109 (129)
Q Consensus 104 tge~k~ 109 (129)
|+...
T Consensus 76 -G~~~~ 80 (86)
T cd05894 76 -GEDHA 80 (86)
T ss_pred -CcEEE
Confidence 76443
No 17
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.56 E-value=1.8e-14 Score=94.21 Aligned_cols=75 Identities=27% Similarity=0.450 Sum_probs=58.7
Q ss_pred CCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecccCCeEEecccc
Q psy5694 34 GNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQ 113 (129)
Q Consensus 34 GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~ltge~k~S~~~ 113 (129)
|+++.|.|.+.+.|. |.++|.+|+..|... ....|+. ..+|.|.|.+++.+|+| .|+|.|.|.. |+...+
T Consensus 1 G~~v~l~C~~~G~P~---p~i~W~k~g~~i~~~-~~~~~~~-~~~~~L~I~~~~~~D~G-~Y~C~a~N~~-G~~~~~--- 70 (76)
T cd05867 1 GETARLDCQVEGIPT---PNITWSINGAPIEGT-DPDPRRH-VSSGALILTDVQPSDTA-VYQCEARNRH-GNLLAN--- 70 (76)
T ss_pred CCeEEEEEEeeEeCC---CeEEEEECCEECCCC-CCCceEE-eeCCEEEECCCChhhCE-EEEEEEECCC-CeEEEE---
Confidence 789999999988874 679999999877542 1234554 46899999999999997 9999999998 774333
Q ss_pred eEEEE
Q psy5694 114 TRLSI 118 (129)
Q Consensus 114 ~~L~V 118 (129)
+.|.|
T Consensus 71 ~~l~V 75 (76)
T cd05867 71 AHVHV 75 (76)
T ss_pred EEEEE
Confidence 46554
No 18
>KOG4222|consensus
Probab=99.56 E-value=7.2e-15 Score=135.50 Aligned_cols=103 Identities=25% Similarity=0.432 Sum_probs=90.6
Q ss_pred eeeeEEeeeeeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCC
Q psy5694 12 PMLPVVKQKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDG 91 (129)
Q Consensus 12 ~v~AVv~q~y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~ 91 (129)
...|+++.+|++++.+. .+..|+.|+|+|.-|...++ +.++|.||+.++.. ....++.+...|.|.|.||+.+|+
T Consensus 125 L~vavlrddfrv~prd~-~~a~ge~avlEcgpP~ghpe--ptvSw~Kdg~pl~~--~~~~~~~lisgG~LlIsnvrksD~ 199 (1281)
T KOG4222|consen 125 LIVAVLRDDFRVSPRDV-QAAVGEEAVLECGPPRGHPE--PTVSWVKDGKPLDH--YDVPIIALISGGNLLISNVRKSDE 199 (1281)
T ss_pred EEEEEechhcccCcccc-cccccceeEEeccCCCCCCC--CcceeecCCCcccc--ccceeEEEecCCcEEEeccccCCC
Confidence 35689999999999997 99999999999999998775 78999999976642 245677788999999999999999
Q ss_pred CcceEEEeecccCCeEEecccceEEEEecCCC
Q psy5694 92 YKSYRCRTVNKITGESQASVFQTRLSITGKLK 123 (129)
Q Consensus 92 g~~Y~C~a~N~ltge~k~S~~~~~L~V~ep~~ 123 (129)
| +|.|++.|.. || |+|. +|+|+|+|+..
T Consensus 200 G-tY~CVatNmv-G~-ReS~-~A~lsv~e~P~ 227 (1281)
T KOG4222|consen 200 G-TYACVATNMV-GE-RESI-PARLSVQEKPW 227 (1281)
T ss_pred c-eeeeeecccc-cc-cccc-cceeeeccCCc
Confidence 8 9999999987 88 7887 99999998765
No 19
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.54 E-value=3.8e-14 Score=97.92 Aligned_cols=87 Identities=23% Similarity=0.407 Sum_probs=66.5
Q ss_pred eEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEee-cceeeecccCCCceEEEccC----ccEEEeccCCCCCCcceE
Q psy5694 22 EINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQ-DDVNIYLNTDTGGKYVVLSS----GDLYVFNATPNDGYKSYR 96 (129)
Q Consensus 22 ~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~-d~~~i~~~~~~~~ry~vlps----G~L~I~nv~~~D~g~~Y~ 96 (129)
+..+.+. .+..|.+|.|.|.+.+.|. .+.++|++ ++..|.. .+.|+.+..+ +.|.|.+++.+|.| .|+
T Consensus 4 ~~~p~~~-~v~~G~~v~l~C~v~G~P~--~p~i~W~~~~g~~l~~---~~~r~~v~~~~~~~~~L~I~~v~~~D~G-~Yt 76 (96)
T cd05865 4 DIVPSQG-EISVGESKFFLCQVAGEAK--DKDISWFSPNGEKLTP---NQQRISVVRNDDYSSTLTIYNANIDDAG-IYK 76 (96)
T ss_pred EEeCCcc-EECCCCeEEEEEEEeCCCC--CCEEEEECCCCcCccc---cCCeEEEEeCCCCceEEEEeccChhhCE-EEE
Confidence 4566777 7899999999999988774 25799998 6665532 2457766533 67999999999997 999
Q ss_pred EEeecccCCeEEecccceEEEE
Q psy5694 97 CRTVNKITGESQASVFQTRLSI 118 (129)
Q Consensus 97 C~a~N~ltge~k~S~~~~~L~V 118 (129)
|.|.|...|+...|. .|.|
T Consensus 77 C~A~N~~~g~~~~s~---~l~v 95 (96)
T cd05865 77 CVVSNEDEGESEATV---NVKI 95 (96)
T ss_pred EEEEcCCCCcEEEEE---EEEE
Confidence 999999878854443 5554
No 20
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.54 E-value=9.5e-14 Score=92.59 Aligned_cols=90 Identities=22% Similarity=0.374 Sum_probs=67.6
Q ss_pred eeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecc-cCCCceEEEccCccEEEecc-----CCCCCCcc
Q psy5694 21 YEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLN-TDTGGKYVVLSSGDLYVFNA-----TPNDGYKS 94 (129)
Q Consensus 21 y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~-~~~~~ry~vlpsG~L~I~nv-----~~~D~g~~ 94 (129)
+...+++. .+.+|+++.|.|.+.+.|. +.++|++|+..|... .....+..++++|.|.+.++ +.+|+| .
T Consensus 4 i~~~p~~~-~v~~G~~~~l~C~~~g~P~---p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G-~ 78 (100)
T cd07693 4 IVEHPSDL-IVSKGDPATLNCKAEGRPT---PTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEG-V 78 (100)
T ss_pred EEecCcee-EEcCCCeEEEEeeCCcCCC---CEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCE-E
Confidence 45567777 8999999999999998874 579999999777431 11245666788998766554 789997 9
Q ss_pred eEEEeecccCCeEEecccceEEEE
Q psy5694 95 YRCRTVNKITGESQASVFQTRLSI 118 (129)
Q Consensus 95 Y~C~a~N~ltge~k~S~~~~~L~V 118 (129)
|+|.|.|.+ |+. .|. .+.|.|
T Consensus 79 Y~C~a~N~~-G~~-~s~-~~~l~v 99 (100)
T cd07693 79 YVCVAHNSL-GEA-VSR-NASLEV 99 (100)
T ss_pred EEEEEEccc-cce-ecc-eEEEEe
Confidence 999999999 652 343 556665
No 21
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.54 E-value=3.8e-14 Score=95.81 Aligned_cols=78 Identities=19% Similarity=0.403 Sum_probs=62.2
Q ss_pred CCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEcc--C-----ccEEEeccCCCCCCcceEEEeecccCCe
Q psy5694 34 GNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLS--S-----GDLYVFNATPNDGYKSYRCRTVNKITGE 106 (129)
Q Consensus 34 GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlp--s-----G~L~I~nv~~~D~g~~Y~C~a~N~ltge 106 (129)
|+++.|.|.+.+.|+ +.+.|++++..|.+ ..+||.+.. . ..|.|.++..+|.| .|.|.|.|.+ |+
T Consensus 1 g~~~~l~C~~~g~p~---~~i~W~k~~~~i~~---~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G-~YtC~A~N~~-G~ 72 (88)
T cd05735 1 GQKKEMSCTAHGEKP---IIVRWEKEDRIINP---EMSRYLVSTKEVGDEVISTLQILPTVREDSG-FFSCHAINSY-GE 72 (88)
T ss_pred CCeEEEEEEEECCCC---CEEEEeeCCEECCC---CCCcEEEEEecCCCcEEEEEEECCCCcccCE-EEEEEEEcCC-Cc
Confidence 789999999987763 57999999977743 236887653 2 56999999999998 9999999999 77
Q ss_pred EEecccceEEEEecCC
Q psy5694 107 SQASVFQTRLSITGKL 122 (129)
Q Consensus 107 ~k~S~~~~~L~V~ep~ 122 (129)
... .+.|+|.+++
T Consensus 73 ~~~---~~~L~V~~~P 85 (88)
T cd05735 73 DRG---IIQLTVQEPP 85 (88)
T ss_pred ceE---EEEEEEeCCC
Confidence 443 4589998764
No 22
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.52 E-value=2.8e-14 Score=94.56 Aligned_cols=71 Identities=21% Similarity=0.374 Sum_probs=56.5
Q ss_pred EEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccC--c--cEEEeccCCCCCCcceEEEeecccCCeEEeccc
Q psy5694 37 AVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSS--G--DLYVFNATPNDGYKSYRCRTVNKITGESQASVF 112 (129)
Q Consensus 37 AvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlps--G--~L~I~nv~~~D~g~~Y~C~a~N~ltge~k~S~~ 112 (129)
+.|+|.+.+.|+ |.+.|++|+..|.. .++||.+..+ | .|.|.+++.+|+| .|+|.|.|.+ |+...
T Consensus 1 v~l~C~v~G~P~---P~i~W~k~~~~i~~---~~~r~~~~~~~~g~~~L~I~~~~~~D~G-~Y~C~A~N~~-G~~~~--- 69 (75)
T cd05892 1 VKLECQISAIPP---PKIFWKRNNEMVQY---NTDRISLYQDNSGRVTLLIKNVNKKDAG-WYTVSAVNEA-GVATC--- 69 (75)
T ss_pred CEEEEEEEecCC---CeEEEEECCEECcC---CCCeEEEEEcCCCcEEEEECCCChhhCE-EEEEEEEcCc-CeEEE---
Confidence 479999998884 68999999987743 2468888654 3 6999999999998 9999999998 77433
Q ss_pred ceEEEE
Q psy5694 113 QTRLSI 118 (129)
Q Consensus 113 ~~~L~V 118 (129)
.++|.|
T Consensus 70 ~a~L~V 75 (75)
T cd05892 70 HARLDV 75 (75)
T ss_pred EEEEeC
Confidence 457764
No 23
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.51 E-value=4.5e-14 Score=92.82 Aligned_cols=75 Identities=17% Similarity=0.304 Sum_probs=58.5
Q ss_pred CCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEcc---CccEEEeccCCCCCCcceEEEeecccCCeEEec
Q psy5694 34 GNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLS---SGDLYVFNATPNDGYKSYRCRTVNKITGESQAS 110 (129)
Q Consensus 34 GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlp---sG~L~I~nv~~~D~g~~Y~C~a~N~ltge~k~S 110 (129)
|+++.|.|.+.+.|. |.++|++++..+. .+.|+.+.. .+.|.|.|++.+|+| .|.|.|.|.+ |.....
T Consensus 1 G~~v~l~C~~~g~P~---p~v~W~~~~~~~~----~~~~~~~~~~~~~~~L~I~~v~~~D~G-~Y~C~a~N~~-G~~~~~ 71 (78)
T cd05743 1 GETVEFTCVATGVPT---PIINWRLNWGHVP----DSARVSITSEGGYGTLTIRDVKESDQG-AYTCEAINTR-GMVFGI 71 (78)
T ss_pred CCEEEEEEEEEEecC---CEEEEEECCeECC----CCCCEEEEECCCEEEEEECCCChHHCE-EEEEEEEecC-CEEEec
Confidence 789999999988774 6799999986663 246776654 367999999999997 9999999998 764444
Q ss_pred ccceEEEE
Q psy5694 111 VFQTRLSI 118 (129)
Q Consensus 111 ~~~~~L~V 118 (129)
. .+.|+|
T Consensus 72 ~-~~~~~~ 78 (78)
T cd05743 72 P-DGILTV 78 (78)
T ss_pred c-cEEEEC
Confidence 4 555543
No 24
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.51 E-value=5.2e-14 Score=90.11 Aligned_cols=69 Identities=23% Similarity=0.449 Sum_probs=55.6
Q ss_pred EEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecccCCeEEecccceEE
Q psy5694 37 AVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRL 116 (129)
Q Consensus 37 AvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~ltge~k~S~~~~~L 116 (129)
|.|.|.+.+.|+ +.+.|.+++..+ ..+|+.+.+++.|.|.+++.+|+| .|.|.|.|.+ |+... .+.|
T Consensus 1 v~l~C~~~g~P~---p~v~W~k~~~~~-----~~~~~~~~~~~~L~I~~v~~~D~G-~Y~C~a~N~~-G~~~~---~~~l 67 (69)
T cd05725 1 VEFQCEVGGDPV---PTVLWRKEDGEL-----PKGRAEILDDKSLKIRNVTAGDEG-SYTCEAENMV-GKIEA---SASL 67 (69)
T ss_pred CEEEEECccCCC---CEEEEEECCccC-----CCCcEEEeeCCEEEECcCChhHCE-EEEEEEEcCC-CcEEE---EEEE
Confidence 579999988774 579999997555 246888889999999999999997 9999999998 66433 3355
Q ss_pred EE
Q psy5694 117 SI 118 (129)
Q Consensus 117 ~V 118 (129)
.|
T Consensus 68 ~V 69 (69)
T cd05725 68 TV 69 (69)
T ss_pred EC
Confidence 54
No 25
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.51 E-value=1.3e-13 Score=93.15 Aligned_cols=79 Identities=24% Similarity=0.451 Sum_probs=63.0
Q ss_pred EEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCc-cEEEeccCCCCCCcceEEEeecccCCeEE
Q psy5694 30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSG-DLYVFNATPNDGYKSYRCRTVNKITGESQ 108 (129)
Q Consensus 30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG-~L~I~nv~~~D~g~~Y~C~a~N~ltge~k 108 (129)
.+..|++|.|.|.+.+.|. +.+.|.+++..|.+ .+.+|....+| .|.|.+++.+|+| .|+|.|.|.+ |...
T Consensus 14 ~~~~G~~v~L~C~~~g~P~---p~v~W~k~g~~~~~---~~~~~~~~~~~~~L~I~~v~~~D~G-~Y~C~a~N~~-G~~~ 85 (95)
T cd05730 14 TANLGQSVTLACDADGFPE---PTMTWTKDGEPIES---GEEKYSFNEDGSEMTILDVDKLDEA-EYTCIAENKA-GEQE 85 (95)
T ss_pred EEeCCCCEEEEEeccEeCC---CEEEEEECCEECcC---CCCEEEEeCCCCEEEECCCChhhCE-EEEEEEEcCC-CeEE
Confidence 6789999999999988774 57899999977743 24677766655 5999999999997 9999999999 6643
Q ss_pred ecccceEEEEe
Q psy5694 109 ASVFQTRLSIT 119 (129)
Q Consensus 109 ~S~~~~~L~V~ 119 (129)
. .+.|.|.
T Consensus 86 ~---~~~L~V~ 93 (95)
T cd05730 86 A---EIHLKVF 93 (95)
T ss_pred E---EEEEEEE
Confidence 3 3466664
No 26
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.50 E-value=1.7e-13 Score=93.68 Aligned_cols=78 Identities=18% Similarity=0.325 Sum_probs=60.7
Q ss_pred EeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc--eeeecc-cCCCceEEEcc---CccEEEeccCCCCCCcceE
Q psy5694 23 INVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD--VNIYLN-TDTGGKYVVLS---SGDLYVFNATPNDGYKSYR 96 (129)
Q Consensus 23 ~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~--~~i~~~-~~~~~ry~vlp---sG~L~I~nv~~~D~g~~Y~ 96 (129)
..+.+. .+.+|++|+|.|.+.+.|. +.++|.+++ ..+... ...++||.+.. ++.|.|.+|+.+|+| .|.
T Consensus 6 ~~~~~~-~~~~G~~v~l~C~~~G~P~---p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G-~Y~ 80 (98)
T cd05870 6 IQLKNE-TTVENGAATLSCKAEGEPI---PEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSG-RYD 80 (98)
T ss_pred EeeccE-EEcCCCcEEEEEecccCCC---CeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCE-EEE
Confidence 446677 8999999999999998874 679999953 344211 12356888864 357999999999998 999
Q ss_pred EEeecccCCe
Q psy5694 97 CRTVNKITGE 106 (129)
Q Consensus 97 C~a~N~ltge 106 (129)
|.|.|.+ |.
T Consensus 81 C~A~N~~-G~ 89 (98)
T cd05870 81 CEAASRI-GG 89 (98)
T ss_pred EEEeccC-Cc
Confidence 9999999 54
No 27
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.50 E-value=1.4e-13 Score=94.55 Aligned_cols=76 Identities=22% Similarity=0.449 Sum_probs=62.4
Q ss_pred eEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeec-ceeeecccCCCceEEEccCc---cEEEeccCCCCCCcceEE
Q psy5694 22 EINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQD-DVNIYLNTDTGGKYVVLSSG---DLYVFNATPNDGYKSYRC 97 (129)
Q Consensus 22 ~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d-~~~i~~~~~~~~ry~vlpsG---~L~I~nv~~~D~g~~Y~C 97 (129)
...+.+. .+..|++|.|.|.+.+.|. .+.|+++ +..+. .+.|+.+..+| .|.|.+++.+|+| .|+|
T Consensus 4 ~~~~~~~-~v~~G~~v~l~C~~~G~P~----~v~W~k~~g~~~~----~~~r~~~~~~g~~~~L~I~~v~~~D~G-~Y~C 73 (92)
T cd05866 4 SISLSKV-ELSVGESKFFTCTAIGEPE----SIDWYNPQGEKIV----SSQRVVVQKEGVRSRLTIYNANIEDAG-IYRC 73 (92)
T ss_pred EEEecce-EEcCCCeEEEEEEEEEeCC----eEEEEeCCCeEec----CCCCEEEEeCCCeeEEEEecCChHHCE-EEEE
Confidence 4566777 8999999999999988773 4799985 45663 34789888887 7999999999997 9999
Q ss_pred EeecccCCeEE
Q psy5694 98 RTVNKITGESQ 108 (129)
Q Consensus 98 ~a~N~ltge~k 108 (129)
.|.|.. |+..
T Consensus 74 ~A~N~~-G~~~ 83 (92)
T cd05866 74 QATDAK-GQTQ 83 (92)
T ss_pred EEEcCC-CcEE
Confidence 999997 7744
No 28
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.50 E-value=1.1e-13 Score=93.38 Aligned_cols=77 Identities=14% Similarity=0.209 Sum_probs=63.5
Q ss_pred eeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEcc---CccEEEeccCCCCCCcceEE
Q psy5694 21 YEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLS---SGDLYVFNATPNDGYKSYRC 97 (129)
Q Consensus 21 y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlp---sG~L~I~nv~~~D~g~~Y~C 97 (129)
+...+++. .+..|+++.|.|.+.+.|. +.+.|++++..|. .+.||.+.+ ++.|.|.+++.+|+| .|.|
T Consensus 6 ~~~~p~~~-~~~~G~~~~L~C~~~g~P~---p~v~W~k~g~~l~----~~~~~~~~~~~~~~~L~i~~~~~~D~G-~Y~C 76 (92)
T cd05747 6 ILTKPRSL-TVSEGESARFSCDVDGEPA---PTVTWMREGQIIV----SSQRHQITSTEYKSTFEISKVQMSDEG-NYTV 76 (92)
T ss_pred ccccCccE-EEeCCCcEEEEEEEeecCC---CEEEEEECCEECC----CCCcEEEEEcCCeeEEEECCCCcccCE-eEEE
Confidence 34456777 9999999999999998884 5699999997764 346787765 458999999999998 9999
Q ss_pred EeecccCCeE
Q psy5694 98 RTVNKITGES 107 (129)
Q Consensus 98 ~a~N~ltge~ 107 (129)
.|.|.+ |+.
T Consensus 77 ~a~N~~-G~~ 85 (92)
T cd05747 77 VVENSE-GKQ 85 (92)
T ss_pred EEEcCC-CCE
Confidence 999999 653
No 29
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.50 E-value=1.4e-13 Score=91.49 Aligned_cols=81 Identities=23% Similarity=0.391 Sum_probs=60.4
Q ss_pred CeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceE----EEccCccEEEeccCCCCCCcceEEEeecccCCeEEec
Q psy5694 35 NTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKY----VVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQAS 110 (129)
Q Consensus 35 ntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry----~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~ltge~k~S 110 (129)
.++.|.|.+.+.|... ..+.|.+|+..|... ..+.+| ....+|.|.|.+++.+|+| .|+|.|.|.+ |+. +
T Consensus 1 e~~~L~C~~~g~P~p~-i~~~W~~~g~~i~~~-~~~~~~~~~~~~~~~~~L~I~~v~~~D~G-~Y~C~a~n~~-g~~--~ 74 (85)
T cd04970 1 ESITLQCHASHDPTLD-LTFTWSFNGVPIDFD-KDGGHYRRVGGKDSNGDLMIRNAQLKHAG-KYTCTAQTVV-DSL--S 74 (85)
T ss_pred CcEEEEEEEecCCCCC-eEEEEEECCeEeecc-CCCccEEEEecccccceEEEccCCHHhCe-eeEEEEecCC-CcE--E
Confidence 3689999998776532 247999999877432 122333 3346899999999999998 9999999988 653 3
Q ss_pred ccceEEEEecCC
Q psy5694 111 VFQTRLSITGKL 122 (129)
Q Consensus 111 ~~~~~L~V~ep~ 122 (129)
. .++|.|..|+
T Consensus 75 ~-~~~l~V~~pP 85 (85)
T cd04970 75 A-SADLIVRGPP 85 (85)
T ss_pred E-EEEEEEECCC
Confidence 3 5699999863
No 30
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.49 E-value=6.7e-14 Score=90.04 Aligned_cols=63 Identities=22% Similarity=0.404 Sum_probs=53.8
Q ss_pred EEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecccCCeEE
Q psy5694 37 AVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQ 108 (129)
Q Consensus 37 AvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~ltge~k 108 (129)
+.|.|.+.+.|. +.++|++|+..|. .++||.+.++|.|.|.+++.+|+| .|.|.|.|.+ |+..
T Consensus 1 v~L~C~~~g~P~---p~i~W~k~g~~~~----~~~~~~~~~~~~L~I~~~~~~D~G-~Y~C~a~N~~-G~~~ 63 (69)
T cd05746 1 VQIPCSAQGDPE---PTITWNKDGVQVT----ESGKFHISPEGYLAIRDVGVADQG-RYECVARNTI-GYAS 63 (69)
T ss_pred CEeEecceEeCC---CEEEEEECCEECC----CCCCEEECCCCEEEECcCChhhCE-EEEEEEECCC-CcEE
Confidence 469999988774 5799999997774 347899999999999999999997 9999999999 6643
No 31
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.49 E-value=1.6e-13 Score=93.57 Aligned_cols=77 Identities=16% Similarity=0.237 Sum_probs=61.9
Q ss_pred EEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEcc-CccEEEeccCCCCCCcceEEEeecccCCeEE
Q psy5694 30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLS-SGDLYVFNATPNDGYKSYRCRTVNKITGESQ 108 (129)
Q Consensus 30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlp-sG~L~I~nv~~~D~g~~Y~C~a~N~ltge~k 108 (129)
.|.+|+++.|.|.+.+. .+.++|.+++..+. .+|+.+.. ++.|.|.+++.+|+| .|+|.|.|.+ |+ .
T Consensus 14 ~v~~g~~v~l~C~a~g~----~p~i~W~kng~~l~-----~~~~~~~~~~~~L~I~~v~~~D~G-~Y~C~a~N~~-G~-~ 81 (91)
T cd05740 14 PPEDNQPVTLTCEAEGQ----ATYIWWVNNGSLLV-----PPRLQLSNDNRTLTFNNVTRSDTG-HYQCEASNEV-SN-M 81 (91)
T ss_pred ccccCCcEEEEEEeCCC----CCEEEEEECCEECC-----CCCEEEeCCCCEEEECcCChhhCE-EEEEEEEcCC-CC-E
Confidence 67899999999999876 36799999997663 24666654 568999999999997 9999999999 66 3
Q ss_pred ecccceEEEEe
Q psy5694 109 ASVFQTRLSIT 119 (129)
Q Consensus 109 ~S~~~~~L~V~ 119 (129)
.|. +..|.|+
T Consensus 82 ~S~-~~~L~V~ 91 (91)
T cd05740 82 TSD-PYILNVN 91 (91)
T ss_pred Eee-eEEEEeC
Confidence 454 6778774
No 32
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.49 E-value=7e-14 Score=92.41 Aligned_cols=71 Identities=18% Similarity=0.278 Sum_probs=56.8
Q ss_pred EEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCc----cEEEeccCCCCCCcceEEEeecccCCeEEeccc
Q psy5694 37 AVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSG----DLYVFNATPNDGYKSYRCRTVNKITGESQASVF 112 (129)
Q Consensus 37 AvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG----~L~I~nv~~~D~g~~Y~C~a~N~ltge~k~S~~ 112 (129)
+.|+|.+.+.|. |.+.|.+|+..|.. ..+||.+..++ .|.|.+++.+|+| .|.|.|.|.+ |+. ++
T Consensus 1 v~l~C~v~G~P~---P~v~W~k~~~~l~~---~~~~~~~~~~~~~~~~L~I~~v~~~D~G-~Y~C~A~N~~-G~~--~~- 69 (75)
T cd05893 1 VRLECRVSGVPH---PQIFWKKENESLTH---NTDRVSMHQDNCGYICLLIQGATKEDAG-WYTVSAKNEA-GIV--SC- 69 (75)
T ss_pred CEEEEEEeEecC---CEEEEEECCEECCC---CCCeEEEEEcCCCEEEEEECCCCHHHCE-EEEEEEEcCC-CEE--EE-
Confidence 479999999884 68999999977743 34688886554 5999999999997 9999999999 774 33
Q ss_pred ceEEEE
Q psy5694 113 QTRLSI 118 (129)
Q Consensus 113 ~~~L~V 118 (129)
.++|.|
T Consensus 70 ~a~L~V 75 (75)
T cd05893 70 TARLDV 75 (75)
T ss_pred EEEEeC
Confidence 457764
No 33
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.48 E-value=2.2e-13 Score=89.82 Aligned_cols=74 Identities=22% Similarity=0.334 Sum_probs=56.9
Q ss_pred EEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEE-ccCccEEEeccCCCCCCcceEEEeecccCCeEE
Q psy5694 30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVV-LSSGDLYVFNATPNDGYKSYRCRTVNKITGESQ 108 (129)
Q Consensus 30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~v-lpsG~L~I~nv~~~D~g~~Y~C~a~N~ltge~k 108 (129)
.|-.|+++.|.|.+.+.|+ +.++|++|+..|.+.. ...++.+ ...+.|.|.+++.+|+| .|+|.|.|.+ |+..
T Consensus 5 ~v~~G~~~~L~C~~~g~P~---p~i~W~k~g~~l~~~~-~~~~~~~~~~~~~l~i~~~~~~D~G-~Y~C~a~N~~-G~~~ 78 (85)
T cd05857 5 AVPAANTVKFRCPAAGNPT---PTMRWLKNGKEFKQEH-RIGGYKVRNQHWSLIMESVVPSDKG-NYTCVVENEY-GSIN 78 (85)
T ss_pred EcCCCCEEEEEEEcCCCCC---CEEEEEECCEECCCCC-ceeeeEEeCCceEEEEccCCcccCE-EEEEEEEeCC-CEEE
Confidence 5778999999999988764 6799999997775421 1123333 24678999999999997 9999999998 6643
Q ss_pred e
Q psy5694 109 A 109 (129)
Q Consensus 109 ~ 109 (129)
.
T Consensus 79 ~ 79 (85)
T cd05857 79 H 79 (85)
T ss_pred E
Confidence 3
No 34
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.48 E-value=1.8e-13 Score=88.88 Aligned_cols=73 Identities=18% Similarity=0.338 Sum_probs=55.9
Q ss_pred EEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEcc-CccEEEeccCCCCCCcceEEEeecccCCeEEecccceE
Q psy5694 37 AVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLS-SGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTR 115 (129)
Q Consensus 37 AvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlp-sG~L~I~nv~~~D~g~~Y~C~a~N~ltge~k~S~~~~~ 115 (129)
|.|.|.+.+.|. |.++|++++..+.+. ....|+.+.+ +|.|.|.+++.+|+| .|.|.|.|.. |+. +. .+.
T Consensus 1 a~l~C~~~G~P~---P~v~W~k~~~~~~~~-~~~~~~~~~~~~~~L~I~~~~~~D~G-~Y~C~A~N~~-G~~--~~-~~~ 71 (75)
T cd05763 1 ARLECAATGHPT---PQIAWQKDGGTDFPA-ARERRMHVMPEDDVFFIVDVKIEDTG-VYSCTAQNTA-GSI--SA-NAT 71 (75)
T ss_pred CEeEeecccccC---CEEEEEeCCCccCCc-ccccceEEecCCCEEEEeeCCcccCE-EEEEEEEcCC-CEE--Ee-eEE
Confidence 689999998874 679999998433221 2356787765 578999999999997 9999999998 764 33 457
Q ss_pred EEE
Q psy5694 116 LSI 118 (129)
Q Consensus 116 L~V 118 (129)
|.|
T Consensus 72 l~V 74 (75)
T cd05763 72 LTV 74 (75)
T ss_pred EEE
Confidence 765
No 35
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.48 E-value=2.8e-13 Score=87.48 Aligned_cols=65 Identities=28% Similarity=0.447 Sum_probs=54.7
Q ss_pred CCeEEEEeeCCCCCCCceeEeEEeec-ceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecccCCeE
Q psy5694 34 GNTAVLRCQIPSYMSEYIIVTSWIQD-DVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGES 107 (129)
Q Consensus 34 GntAvL~C~vp~~~~~~v~v~sW~~d-~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~ltge~ 107 (129)
|.++.|.|.+.+.|+ +.+.|+++ +..+. ...|+.+.++|.|.|.+++.+|.| .|.|+|.|.+ |..
T Consensus 1 G~~~~l~C~~~g~P~---p~v~W~~~~~~~~~----~~~~~~~~~~~~L~i~~~~~~D~G-~Y~C~a~N~~-G~~ 66 (74)
T cd05764 1 GQRATLRCKARGDPE---PAIHWISPDGKLIS----NSSRTLVYDNGTLDILITTVKDTG-SFTCIASNAA-GEA 66 (74)
T ss_pred CCeEEEEEEccCcCC---CEEEEEeCCCEEec----CCCeEEEecCCEEEEEECChhhCE-EEEEEEECCC-CeE
Confidence 789999999987764 67999974 45553 346888889999999999999997 9999999998 663
No 36
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.48 E-value=1.5e-13 Score=92.88 Aligned_cols=69 Identities=25% Similarity=0.382 Sum_probs=56.9
Q ss_pred eEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccC-c---cEEEeccCCCCCCcceEEEeecccC
Q psy5694 29 HNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSS-G---DLYVFNATPNDGYKSYRCRTVNKIT 104 (129)
Q Consensus 29 ~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlps-G---~L~I~nv~~~D~g~~Y~C~a~N~lt 104 (129)
+.+.+|+++.|.|.+.+.|. |.++|++++..|.+ ++||.+... | .|.|.+++.+|+| .|+|.|.|.+
T Consensus 11 v~v~~G~~v~L~C~v~G~P~---p~v~W~k~g~~l~~----~~~~~~~~~~~~~~~L~I~~v~~~D~G-~Y~C~a~N~~- 81 (92)
T cd05737 11 VTIMEGKTLNLTCTVFGDPD---PEVSWLKNDQALAL----SDHYNVKVEQGKYASLTIKGVSSEDSG-KYGIVVKNKY- 81 (92)
T ss_pred EEEeCCCcEEEEEEEEecCC---CeEEEEECCEECcc----CCCEEEEEcCCCEEEEEEccCChhhCE-EEEEEEEECC-
Confidence 38899999999999988774 67999999987743 456666432 3 6999999999997 9999999998
Q ss_pred Ce
Q psy5694 105 GE 106 (129)
Q Consensus 105 ge 106 (129)
|+
T Consensus 82 G~ 83 (92)
T cd05737 82 GG 83 (92)
T ss_pred Cc
Confidence 55
No 37
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.48 E-value=1.8e-13 Score=89.90 Aligned_cols=75 Identities=16% Similarity=0.294 Sum_probs=56.9
Q ss_pred CCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecccCCeEEecccc
Q psy5694 34 GNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQ 113 (129)
Q Consensus 34 GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~ltge~k~S~~~ 113 (129)
|..+.|.|.+.+.|+ |.++|++++.+|... ...+.....++.|.|.+++.+|+| .|+|.|.|.+ |+...+.
T Consensus 1 g~~~~l~C~a~G~P~---P~i~W~k~g~~i~~~--~~~~~~~~~~~~l~i~~v~~~D~G-~Y~C~A~N~~-G~~~~~~-- 71 (76)
T cd05868 1 GEDGTLICRANGNPK---PSISWLTNGVPIEIA--PTDPSRKVDGDTIIFSKVQERSSA-VYQCNASNEY-GYLLANA-- 71 (76)
T ss_pred CCCEEEEEEeeEeCC---CeEEEEECCEEcccc--CCCceEEecCCEEEECCCCHhhCE-EEEEEEEcCC-CEEEEEE--
Confidence 788999999998874 679999999887532 112222334568999999999997 9999999999 7754443
Q ss_pred eEEEE
Q psy5694 114 TRLSI 118 (129)
Q Consensus 114 ~~L~V 118 (129)
.|.|
T Consensus 72 -~l~v 75 (76)
T cd05868 72 -FVNV 75 (76)
T ss_pred -EEEe
Confidence 5554
No 38
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.48 E-value=3.2e-13 Score=90.85 Aligned_cols=81 Identities=23% Similarity=0.423 Sum_probs=60.7
Q ss_pred CeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEE---c-cCccEEEeccCCCCCCcceEEEeecccCCeEEec
Q psy5694 35 NTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVV---L-SSGDLYVFNATPNDGYKSYRCRTVNKITGESQAS 110 (129)
Q Consensus 35 ntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~v---l-psG~L~I~nv~~~D~g~~Y~C~a~N~ltge~k~S 110 (129)
+++.|.|.+.+.|... ..+.|.+|+..|... ..+++|.. . ..|.|.|.|++.+|.| .|+|.|.|.. |+...
T Consensus 1 ~~~~L~C~a~g~P~p~-~~v~W~~~g~~i~~~-~~~~~~~~~~~~~~~~~L~I~~v~~~D~G-~YtC~A~n~~-g~~~~- 75 (85)
T cd05854 1 ENLTLQCHASHDPTMD-LTFTWSLDDFPIDLD-KPNGHYRRMEVKETIGDLVIVNAQLSHAG-TYTCTAQTVV-DSASA- 75 (85)
T ss_pred CcEEEEEEEecCCCCC-eEEEEEECCeEcccc-CCCCcEEEEEecceEeEEEEccCChhhCe-EEEEEEecCC-CCEEE-
Confidence 3689999998887542 247999999877432 12455533 2 3689999999999997 9999999999 66433
Q ss_pred ccceEEEEecCC
Q psy5694 111 VFQTRLSITGKL 122 (129)
Q Consensus 111 ~~~~~L~V~ep~ 122 (129)
.++|.|..|+
T Consensus 76 --~~~L~V~~~P 85 (85)
T cd05854 76 --SATLVVRGPP 85 (85)
T ss_pred --EEEEEEECCC
Confidence 5599998763
No 39
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.48 E-value=2.5e-13 Score=87.66 Aligned_cols=75 Identities=24% Similarity=0.340 Sum_probs=57.7
Q ss_pred CCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecccCCeEEecccc
Q psy5694 34 GNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQ 113 (129)
Q Consensus 34 GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~ltge~k~S~~~ 113 (129)
|+.+.|.|.+.+.|. |.++|.+++..|... .........+|.|.|.+++.+|+| .|+|.|.|.. |+...+
T Consensus 1 G~~~~l~C~~~g~P~---p~i~W~~~g~~~~~~--~~~~~~~~~~~~L~i~~v~~~D~G-~Y~C~A~N~~-G~~~~~--- 70 (76)
T cd04978 1 GETGRLDCEAEGIPQ---PTITWRLNGVPIEEL--PPDPRRRVDGGTLILSNVQPNDTA-VYQCNASNVH-GYLLAN--- 70 (76)
T ss_pred CCeEEEEEEceeeCC---CEEEEEECCEECCCC--CCcceEEccCCEEEECCCChhhCE-EEEEEEEccC-CeEEEe---
Confidence 789999999988774 679999999777542 111244567899999999999997 9999999997 774433
Q ss_pred eEEEE
Q psy5694 114 TRLSI 118 (129)
Q Consensus 114 ~~L~V 118 (129)
+.|.|
T Consensus 71 ~~l~V 75 (76)
T cd04978 71 AFVHV 75 (76)
T ss_pred EEEEE
Confidence 35554
No 40
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.47 E-value=3.2e-13 Score=92.44 Aligned_cols=85 Identities=21% Similarity=0.319 Sum_probs=61.8
Q ss_pred eeEeeeeeeEEEe---CCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccC-CCCCCcceE
Q psy5694 21 YEINVNYEHNVIL---GNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNAT-PNDGYKSYR 96 (129)
Q Consensus 21 y~~~v~~~~~V~~---GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~-~~D~g~~Y~ 96 (129)
|..++.+. .+-+ |+.+.|.|.+.+.|. +.++|.+++..|.. .++||. +.+|.|.|.++. .+|+| .|+
T Consensus 4 f~~~P~~~-~~~~~~~~~~v~l~C~a~G~P~---P~i~W~k~~~~i~~---~~~~~~-~~~g~L~I~~~~~~~D~G-~Y~ 74 (93)
T cd05849 4 FEEQPIDT-IYPEESTEGKVSVNCRARANPF---PIYKWRKNNLDIDL---TNDRYS-MVGGNLVINNPDKYKDAG-RYV 74 (93)
T ss_pred EEECCCCE-EecCCccCCeEEEeCcCccCCC---CEEEEEECCEEccC---CCCeEE-EECCEEEECcCCcCCCCE-EEE
Confidence 34445544 3333 558999999988874 67999999977742 245774 568999999986 68997 999
Q ss_pred EEeecccCCeEEecccceEEE
Q psy5694 97 CRTVNKITGESQASVFQTRLS 117 (129)
Q Consensus 97 C~a~N~ltge~k~S~~~~~L~ 117 (129)
|.|.|.+ |+. .|. .++|+
T Consensus 75 C~A~N~~-G~~-~s~-~a~l~ 92 (93)
T cd05849 75 CIVSNIY-GKV-RSR-EATLS 92 (93)
T ss_pred EEEEeCc-ceE-EEc-cEEEe
Confidence 9999999 663 233 55654
No 41
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.47 E-value=1.9e-13 Score=91.96 Aligned_cols=77 Identities=18% Similarity=0.293 Sum_probs=60.3
Q ss_pred eeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecc-cCCCceEEEcc---CccEEEeccCCCCCCcceEEEee
Q psy5694 25 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLN-TDTGGKYVVLS---SGDLYVFNATPNDGYKSYRCRTV 100 (129)
Q Consensus 25 v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~-~~~~~ry~vlp---sG~L~I~nv~~~D~g~~Y~C~a~ 100 (129)
+.+. .+.+|++|.|.|.+.+.|. +.+.|++++..+... ...++|+.+.+ .+.|.|.+|+.+|+| .|.|.|.
T Consensus 8 ~~~~-~~~~g~~v~l~C~~~g~p~---p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G-~Y~C~a~ 82 (96)
T cd05732 8 LENQ-TAVELEQITLTCEAEGDPI---PEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAG-RYDCEAS 82 (96)
T ss_pred cCce-eEecCCcEEEEEEEeEcCC---CcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCE-EeEEEEE
Confidence 4556 8899999999999988763 579999988655322 11346777754 357999999999997 9999999
Q ss_pred cccCCeE
Q psy5694 101 NKITGES 107 (129)
Q Consensus 101 N~ltge~ 107 (129)
|.+ |+.
T Consensus 83 N~~-G~~ 88 (96)
T cd05732 83 NRI-GGD 88 (96)
T ss_pred eCC-CCc
Confidence 999 553
No 42
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.47 E-value=2e-13 Score=92.79 Aligned_cols=75 Identities=19% Similarity=0.357 Sum_probs=58.5
Q ss_pred eEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEee-cceeeecccCCCceEEEccCc----cEEEeccCCCCCCcceE
Q psy5694 22 EINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQ-DDVNIYLNTDTGGKYVVLSSG----DLYVFNATPNDGYKSYR 96 (129)
Q Consensus 22 ~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~-d~~~i~~~~~~~~ry~vlpsG----~L~I~nv~~~D~g~~Y~ 96 (129)
.+.+++. .+..|++|.|.|.+.+.|+ .++|.+ ++..+.+ .+++.+..+| .|.|.+++.+|.| .|+
T Consensus 4 ~v~p~~~-~v~~G~~~~l~C~~~G~p~----~i~W~~~~~~~~~~----~~~~~~~~~~~~~~~L~I~~v~~~D~G-~Y~ 73 (92)
T cd04977 4 DIVPSQG-EISVGESKFFLCQVIGEPK----DISWFSPNGEKLVT----QQQISVVQNDDVRSTLTIYNANIEDAG-IYK 73 (92)
T ss_pred EEecCcE-EECCCCeEEEEEEeEeeCC----eEEEECCCCCEecc----CCCEEEEeCCCCEEEEEEecCCcccCE-EEE
Confidence 4567777 8999999999999987752 589997 5555532 2455555444 7999999999998 999
Q ss_pred EEeecccCCe
Q psy5694 97 CRTVNKITGE 106 (129)
Q Consensus 97 C~a~N~ltge 106 (129)
|.|.|.+++.
T Consensus 74 C~A~N~~g~~ 83 (92)
T cd04977 74 CVATDAKGTE 83 (92)
T ss_pred EEEEcCCCCc
Confidence 9999998554
No 43
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.47 E-value=2.2e-13 Score=95.06 Aligned_cols=79 Identities=16% Similarity=0.175 Sum_probs=61.3
Q ss_pred EEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEcc--------CccEEEeccCCCCCCcceEEEeec
Q psy5694 30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLS--------SGDLYVFNATPNDGYKSYRCRTVN 101 (129)
Q Consensus 30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlp--------sG~L~I~nv~~~D~g~~Y~C~a~N 101 (129)
.|.+|..+.|.|.+.++++ .+.+.|+||+.+|.. +.++.+.. .+.|.|.+|..+|+| .|+|+|.|
T Consensus 14 ~v~~G~~v~L~c~v~g~~P--~p~v~W~Kdg~~i~~----~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G-~Ytc~A~N 86 (101)
T cd04975 14 FVNLGENLNLVVEVEAYPP--PPHINWTYDNRTLTN----KLTEIVTSENESEYRYVSELKLVRLKESEAG-TYTFLASN 86 (101)
T ss_pred EEECCCCEEEEEEEEecCC--CCccEEEeCCeeCCC----CcceeEEEeccCcceEEEEEEEeecCHhhCe-eEEEEEEC
Confidence 7889999999999998433 367999999988842 34444443 267999999999998 99999999
Q ss_pred ccCCeEEecccceEEEEe
Q psy5694 102 KITGESQASVFQTRLSIT 119 (129)
Q Consensus 102 ~ltge~k~S~~~~~L~V~ 119 (129)
.+ |+... ...|.|+
T Consensus 87 ~~-G~~~~---t~~L~V~ 100 (101)
T cd04975 87 SD-ASKSL---TFELYVN 100 (101)
T ss_pred CC-ccEEE---EEEEEEE
Confidence 99 66322 4577764
No 44
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.46 E-value=2.8e-13 Score=89.12 Aligned_cols=73 Identities=30% Similarity=0.422 Sum_probs=56.1
Q ss_pred EEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEcc-CccEEEeccCCCCCCcceEEEeecccCCeEEecccceE
Q psy5694 37 AVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLS-SGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTR 115 (129)
Q Consensus 37 AvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlp-sG~L~I~nv~~~D~g~~Y~C~a~N~ltge~k~S~~~~~ 115 (129)
+.|.|.+.+.|. |.++|++++..|.+ ..+++.+.. .|.|.|.+++.+|+| .|+|.|.|.+ |+...+. ...
T Consensus 1 v~L~C~~~g~P~---p~v~W~k~g~~l~~---~~~~~~~~~~~~~L~I~~~~~~D~G-~Y~C~a~N~~-G~~~s~~-~~~ 71 (77)
T cd05760 1 VTLRCHIDGHPR---PTYQWFRDGTPLSD---GQGNYSVSSKERTLTLRSAGPDDSG-LYYCCAHNAF-GSVCSSQ-NFT 71 (77)
T ss_pred CEEEEEeeecCC---CcEEEEECCEECCC---CCccEEEeCCCCEEEEeeCCcccCE-EEEEEEEeCC-CeEeeCc-eEE
Confidence 579999988874 67999999977743 235666653 568999999999997 9999999999 7755554 344
Q ss_pred EEE
Q psy5694 116 LSI 118 (129)
Q Consensus 116 L~V 118 (129)
|.|
T Consensus 72 l~v 74 (77)
T cd05760 72 LSI 74 (77)
T ss_pred EEE
Confidence 444
No 45
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.46 E-value=4.3e-13 Score=91.63 Aligned_cols=78 Identities=19% Similarity=0.355 Sum_probs=58.7
Q ss_pred eeEeeeeeeEEE---eCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccC-CCCCCcceE
Q psy5694 21 YEINVNYEHNVI---LGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNAT-PNDGYKSYR 96 (129)
Q Consensus 21 y~~~v~~~~~V~---~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~-~~D~g~~Y~ 96 (129)
|...+.+. .+. .|+++.|.|.+.+.|+ +.++|++|+..|... .+.+|. ..+|.|.|.++. .+|+| .|+
T Consensus 4 f~~~p~~~-~~~~~~~g~~v~l~C~~~G~P~---P~i~W~k~g~~l~~~--~~~~~~-~~~g~L~i~~~~~~~D~G-~Y~ 75 (94)
T cd05848 4 FVQEPDDA-IFPTDSDEKKVILNCEARGNPV---PTYRWLRNGTEIDTE--SDYRYS-LIDGNLIISNPSEVKDSG-RYQ 75 (94)
T ss_pred eEECCCcE-EccCCCCCCEEEEEEEeeecCC---CEEEEEECCeECccC--CCceEE-eeCCeEEEccCCccCcCE-EEE
Confidence 33445554 333 4799999999988874 679999999777432 234554 468999999985 69997 999
Q ss_pred EEeecccCCeE
Q psy5694 97 CRTVNKITGES 107 (129)
Q Consensus 97 C~a~N~ltge~ 107 (129)
|.|.|.+ |+.
T Consensus 76 C~A~N~~-G~~ 85 (94)
T cd05848 76 CLATNSI-GSI 85 (94)
T ss_pred EEEEcCC-CeE
Confidence 9999999 763
No 46
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.46 E-value=5.5e-13 Score=90.99 Aligned_cols=85 Identities=21% Similarity=0.389 Sum_probs=61.9
Q ss_pred eeEeeeeeeEEEeC---CeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccC-CCCCCcceE
Q psy5694 21 YEINVNYEHNVILG---NTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNAT-PNDGYKSYR 96 (129)
Q Consensus 21 y~~~v~~~~~V~~G---ntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~-~~D~g~~Y~ 96 (129)
|..++++. .+.+| ++|.|.|.+.+.|. +.++|.+|+..|... .+.+|.+ .+|.|.|.++. .+|+| .|+
T Consensus 4 f~~~P~~~-~~~~~~~g~~v~l~C~a~g~P~---p~i~W~~~g~~l~~~--~~~~~~~-~~g~L~I~~~~~~~D~G-~Y~ 75 (94)
T cd05850 4 FEEQPSSL-LFPEGSPEEKVTLGCRARASPP---ATYRWKMNGTEIKFA--PESRYTL-VAGNLVINNPQKARDAG-SYQ 75 (94)
T ss_pred eEECCCCE-EecCCCCCCeEEEEeEceeCCC---CEEEEEECCEECccC--CCceEEE-ECCeEEEccCCccCcCE-EEE
Confidence 55566666 44445 68999999988774 579999999777431 3456654 58999999976 58997 999
Q ss_pred EEeecccCCeEEecccceEE
Q psy5694 97 CRTVNKITGESQASVFQTRL 116 (129)
Q Consensus 97 C~a~N~ltge~k~S~~~~~L 116 (129)
|.|.|.+ |+. .|. .+.|
T Consensus 76 C~A~N~~-G~~-~s~-~a~l 92 (94)
T cd05850 76 CLAINRC-GTV-VSR-EANL 92 (94)
T ss_pred EEEEcCc-CcE-EEE-EEEE
Confidence 9999999 663 333 4444
No 47
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=99.45 E-value=2.7e-13 Score=92.85 Aligned_cols=69 Identities=29% Similarity=0.487 Sum_probs=56.8
Q ss_pred eeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecc
Q psy5694 24 NVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNK 102 (129)
Q Consensus 24 ~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~ 102 (129)
+|++. .|..|++|.|.|.+.+ + .+.++|.+|+.+|.+. .+||.+ .+|.|.|.|++.+|+| .|+|.|.+.
T Consensus 2 ~P~~~-~v~~G~~v~L~C~~~~-~---~~~i~W~~ng~~i~~~---~~r~~~-~~~~L~I~nv~~~DsG-~Y~C~a~e~ 70 (87)
T cd05873 2 DPRQR-TFKLGNNAELKCSPKS-N---LARVVWKFDGKVLTPE---SAKYLL-YRDGLLIFNASEADAG-RYQCLSVEK 70 (87)
T ss_pred CcceE-EEECCCCEEEEEECCC-C---CCeEEEEECCEECCCC---CceEEE-ECCcEEEeCCCHHHCE-EEEEEEEec
Confidence 45666 8999999999999753 3 3578999999888542 367765 5788999999999998 999999987
No 48
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.45 E-value=3.2e-13 Score=87.77 Aligned_cols=74 Identities=20% Similarity=0.373 Sum_probs=59.3
Q ss_pred EEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCcc-EEEeccCCCCCCcceEEEeecccCCeEEecccceE
Q psy5694 37 AVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGD-LYVFNATPNDGYKSYRCRTVNKITGESQASVFQTR 115 (129)
Q Consensus 37 AvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~-L~I~nv~~~D~g~~Y~C~a~N~ltge~k~S~~~~~ 115 (129)
|.|.|.+.+.|+ +.+.|++++..|.+. ...++.+.++|. |.|.+++.+|.| .|+|.|.|.+ |... . .+.
T Consensus 1 ~~L~C~v~g~P~---p~v~W~k~~~~l~~~--~~~~~~~~~~~~~l~I~~~~~~D~G-~Y~C~a~N~~-G~~~--~-~~~ 70 (76)
T cd05736 1 ASLRCHAEGIPL---PRLTWLKNGMDITPK--LSKQLTLIANGSELHISNVRYEDTG-AYTCIAKNEA-GVDE--D-ISS 70 (76)
T ss_pred CEeEeEeeecCC---CEEEEEECCEECCCC--CCccEEEeCCCCEEEECcCCcccCE-EEEEEEEcCC-CCcc--e-EEE
Confidence 679999998774 578999999777542 346888888775 999999999997 9999999998 6533 2 558
Q ss_pred EEEec
Q psy5694 116 LSITG 120 (129)
Q Consensus 116 L~V~e 120 (129)
|.|++
T Consensus 71 l~V~~ 75 (76)
T cd05736 71 LFVED 75 (76)
T ss_pred EEEEc
Confidence 88864
No 49
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.45 E-value=4.9e-13 Score=87.05 Aligned_cols=72 Identities=28% Similarity=0.445 Sum_probs=54.6
Q ss_pred CCeEEEEeeCCCCCCCceeEeEEeecc---e-eeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecccCCeEEe
Q psy5694 34 GNTAVLRCQIPSYMSEYIIVTSWIQDD---V-NIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQA 109 (129)
Q Consensus 34 GntAvL~C~vp~~~~~~v~v~sW~~d~---~-~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~ltge~k~ 109 (129)
|+++.|.|.+.+.|. +.++|+++. . .+.......+++.+...|.|.|.+++.+|+| .|.|.|.|.. |+.+.
T Consensus 1 G~~v~l~C~~~g~P~---p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G-~Y~C~a~N~~-G~~~~ 75 (81)
T cd05765 1 GETASFHCDVTGRPP---PEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAG-LYTCTARNSG-GLLRA 75 (81)
T ss_pred CCcEEEEeeccccCC---CcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCE-EEEEEEecCC-ceEEE
Confidence 789999999988774 579999973 1 1211112235677778899999999999997 9999999998 77444
Q ss_pred c
Q psy5694 110 S 110 (129)
Q Consensus 110 S 110 (129)
+
T Consensus 76 ~ 76 (81)
T cd05765 76 N 76 (81)
T ss_pred E
Confidence 3
No 50
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.44 E-value=3.4e-13 Score=88.53 Aligned_cols=71 Identities=20% Similarity=0.327 Sum_probs=55.6
Q ss_pred EEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCc----cEEEeccCCCCCCcceEEEeecccCCeEEeccc
Q psy5694 37 AVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSG----DLYVFNATPNDGYKSYRCRTVNKITGESQASVF 112 (129)
Q Consensus 37 AvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG----~L~I~nv~~~D~g~~Y~C~a~N~ltge~k~S~~ 112 (129)
+.|+|.+.+.|+ |.+.|.+|+..|.. ...||.+..++ .|.|.+++.+|+| .|+|.|.|.+ |+. ++
T Consensus 1 v~L~C~v~G~P~---P~v~W~k~~~~i~~---~~~r~~~~~~~~~~~~L~I~~~~~~D~G-~Y~C~a~N~~-G~~--~~- 69 (75)
T cd05744 1 VRLECRVSAIPP---PQIFWKKNNEMLTY---NTDRISLYQDNCGRICLLIQNANKEDAG-WYTVSAVNEA-GVV--SC- 69 (75)
T ss_pred CEEEEEEeecCC---CeEEEEECCEECCC---CCCcEEEEEcCCCeEEEEECCCCcccCE-EEEEEEEcCC-CcE--EE-
Confidence 469999998885 67999999987743 24678776543 4999999999997 9999999999 663 33
Q ss_pred ceEEEE
Q psy5694 113 QTRLSI 118 (129)
Q Consensus 113 ~~~L~V 118 (129)
.++|.|
T Consensus 70 ~~~l~v 75 (75)
T cd05744 70 NARLDV 75 (75)
T ss_pred EEEEeC
Confidence 456654
No 51
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.44 E-value=5.4e-13 Score=91.12 Aligned_cols=73 Identities=25% Similarity=0.393 Sum_probs=58.2
Q ss_pred EEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccC-------ccEEEeccCCCCCCcceEEEeecc
Q psy5694 30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSS-------GDLYVFNATPNDGYKSYRCRTVNK 102 (129)
Q Consensus 30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlps-------G~L~I~nv~~~D~g~~Y~C~a~N~ 102 (129)
.+.+|++|.|.|.+.+.|.+ ..+.|.+++..|.+. .++||.+..+ +.|.|.+++.+|..|.|.|.|.|.
T Consensus 12 ~~~~G~~v~L~C~~~g~P~P--~~v~W~~~~~~i~~~--~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~A~N~ 87 (98)
T cd05758 12 YAILGDKGRVECFIFSTPPP--DRIVWTWKENELESG--SSGRYTVETDPSPGGVLSTLTISNTQESDFQTSYNCTAWNS 87 (98)
T ss_pred EEeCCCcEEEEEEEcccCCC--CEeEEEECCEEccCC--CCCCEEEEEecCCCceEEEEEECCccccccceeEEEEEEcC
Confidence 78999999999999987742 258999999877542 3468988754 379999999977434999999999
Q ss_pred cCCeE
Q psy5694 103 ITGES 107 (129)
Q Consensus 103 ltge~ 107 (129)
+ |+.
T Consensus 88 ~-G~~ 91 (98)
T cd05758 88 F-GSG 91 (98)
T ss_pred C-Ccc
Confidence 9 663
No 52
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.43 E-value=4.1e-13 Score=90.29 Aligned_cols=77 Identities=21% Similarity=0.292 Sum_probs=57.2
Q ss_pred eeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecccCC
Q psy5694 26 NYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITG 105 (129)
Q Consensus 26 ~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~ltg 105 (129)
++. .+..|++|.|.|.+.+.| .+.++|++|+..+... .....-.....+.|.|.+++.+|.| .|+|.|.|.+ |
T Consensus 8 ~~~-~v~~G~~v~l~C~~~G~P---~p~v~W~~~g~~~~~~-~~~~~~~~~~~~~L~I~~v~~~D~g-~Y~C~A~N~~-G 80 (90)
T cd04972 8 NAT-VVYEGGTATIRCTAEGSP---LPKVEWIIAGLIVIQT-RTDTLETTVDIYNLQLSNITSETQT-TVTCTAENPV-G 80 (90)
T ss_pred cCE-EEcCCCcEEEEEEEEEcC---CCeEEEEECCEEccCC-ccEEEEecCCEEEEEEecCCcccCE-EEEEEEECCC-C
Confidence 344 688999999999999887 4789999999666321 0001111235678999999999976 9999999999 6
Q ss_pred eEEe
Q psy5694 106 ESQA 109 (129)
Q Consensus 106 e~k~ 109 (129)
+...
T Consensus 81 ~~~~ 84 (90)
T cd04972 81 QANV 84 (90)
T ss_pred ceeE
Confidence 6433
No 53
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.43 E-value=6.3e-13 Score=89.76 Aligned_cols=76 Identities=24% Similarity=0.309 Sum_probs=54.3
Q ss_pred CCeEEEEeeCCCCCCCceeEeEEeecc----eeeecccCCCceEEEc----------cCccEEEeccCCCCCCcceEEEe
Q psy5694 34 GNTAVLRCQIPSYMSEYIIVTSWIQDD----VNIYLNTDTGGKYVVL----------SSGDLYVFNATPNDGYKSYRCRT 99 (129)
Q Consensus 34 GntAvL~C~vp~~~~~~v~v~sW~~d~----~~i~~~~~~~~ry~vl----------psG~L~I~nv~~~D~g~~Y~C~a 99 (129)
|++|.|+|.+.+.| .|.++|+|++ ..+.+. ......++ ..+.|.|.||+.+|+| .|+|.|
T Consensus 1 G~~v~l~C~v~g~P---~P~i~W~k~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G-~Y~C~A 74 (90)
T cd04974 1 GSDVEFHCKVYSDA---QPHIQWLKHVEVNGSKYGPD--GLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAG-EYTCLA 74 (90)
T ss_pred CCcEEEEEEEeCCC---CCeEEEEEecccCCceeCCC--CCceEEEEEecCCcccccccceEEEeccccccCc-EEEEEe
Confidence 78999999999887 4679999963 223211 11111222 2357999999999998 999999
Q ss_pred ecccCCeEEecccceEEEEe
Q psy5694 100 VNKITGESQASVFQTRLSIT 119 (129)
Q Consensus 100 ~N~ltge~k~S~~~~~L~V~ 119 (129)
.|.+ |+. +. .|.|.|.
T Consensus 75 ~N~~-G~~--~~-sa~L~V~ 90 (90)
T cd04974 75 GNSI-GPS--HH-SAWLTVL 90 (90)
T ss_pred eccc-Ccc--cC-CEEEEeC
Confidence 9999 663 33 5688774
No 54
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.43 E-value=8.5e-13 Score=87.15 Aligned_cols=80 Identities=21% Similarity=0.378 Sum_probs=64.5
Q ss_pred eeeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEc---cCccEEEeccCCCCCCcceE
Q psy5694 20 KYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVL---SSGDLYVFNATPNDGYKSYR 96 (129)
Q Consensus 20 ~y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vl---psG~L~I~nv~~~D~g~~Y~ 96 (129)
.|...+.+. .+.+|+++.|.|.+.+.|. +.++|.+++..|.. +.+|.+. .+..|.|.+++.+|+| .|+
T Consensus 2 ~~~~~~~~~-~v~~G~~~~l~c~~~~~p~---~~v~W~~~~~~l~~----~~~~~~~~~~~~~~L~I~~v~~~D~G-~Y~ 72 (90)
T PF07679_consen 2 VFTKKPKDV-TVKEGESVTLECEVSGNPP---PTVTWYKNGRPLTS----SQRYQIESDGGSSSLTIKNVTREDAG-TYT 72 (90)
T ss_dssp EEEEESSEE-EEETTSEEEEEEEEEESSS---SEEEEEETTEEEES----SSSEEEEEETTEEEEEESSESGGGSE-EEE
T ss_pred EEEEecCCE-EEeCCCEEEEEEEEEeCCC---Ccccccccccceee----eeeeeeecccceeEEccCCCChhhCE-EEE
Confidence 355566666 9999999999999987753 57899999988854 4667665 4667999999999997 999
Q ss_pred EEeecccCCeEEe
Q psy5694 97 CRTVNKITGESQA 109 (129)
Q Consensus 97 C~a~N~ltge~k~ 109 (129)
|.|.|.. |+...
T Consensus 73 C~~~n~~-g~~~~ 84 (90)
T PF07679_consen 73 CVASNSS-GEATA 84 (90)
T ss_dssp EEEEETT-EEEEE
T ss_pred EEEEECC-CEEEE
Confidence 9999995 66433
No 55
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.42 E-value=6.2e-13 Score=87.81 Aligned_cols=69 Identities=20% Similarity=0.371 Sum_probs=56.4
Q ss_pred eeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecccCC
Q psy5694 26 NYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITG 105 (129)
Q Consensus 26 ~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~ltg 105 (129)
++. .+.+|.++.|.|.+.+.+ +.+.|.+|+..|.+ +.|+.+. ++.|.|.+++.+|.| .|+|.|.|.+ |
T Consensus 2 ~~~-~~~~G~~v~l~C~~~~~~----~~v~W~k~g~~l~~----~~~~~~~-~~~L~I~~~~~~DsG-~Y~C~a~n~~-g 69 (79)
T cd04973 2 ESY-SAHPGDLLQLRCRLRDDV----QSINWTKDGVQLGE----NNRTRIT-GEEVQIKDAVPRDSG-LYACVTSSPS-G 69 (79)
T ss_pred CcE-EecCCCCEEEEEEecCCC----ceEEEeeCCcCCCC----CceEEEe-CCEEEECCCChhhCE-EEEEEEeCCC-C
Confidence 344 788999999999998643 46899999987743 4677664 567999999999997 9999999987 5
Q ss_pred e
Q psy5694 106 E 106 (129)
Q Consensus 106 e 106 (129)
+
T Consensus 70 ~ 70 (79)
T cd04973 70 S 70 (79)
T ss_pred c
Confidence 4
No 56
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.41 E-value=1.2e-12 Score=89.25 Aligned_cols=73 Identities=23% Similarity=0.306 Sum_probs=56.1
Q ss_pred EEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecc-cCCCceEEEcc---CccEEEeccCCCCCCcceEEEeecccCC
Q psy5694 30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLN-TDTGGKYVVLS---SGDLYVFNATPNDGYKSYRCRTVNKITG 105 (129)
Q Consensus 30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~-~~~~~ry~vlp---sG~L~I~nv~~~D~g~~Y~C~a~N~ltg 105 (129)
.+..|+.+.|.|.+.+.|. |.++|.+++..|... ....+|+.+.. .+.|.|.+++.+|+| .|.|.|.|.+ |
T Consensus 13 ~~~~g~~v~l~C~~~G~P~---P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G-~Y~C~A~N~~-G 87 (97)
T cd05869 13 AMELEEQITLTCEASGDPI---PSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAG-EYLCTASNTI-G 87 (97)
T ss_pred EEEcCCCEEEEEEeeEeCC---CEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCE-EEEEEEecCC-C
Confidence 3444899999999988774 679999988666432 11246776643 368999999999997 9999999999 5
Q ss_pred eE
Q psy5694 106 ES 107 (129)
Q Consensus 106 e~ 107 (129)
..
T Consensus 88 ~~ 89 (97)
T cd05869 88 QD 89 (97)
T ss_pred Ce
Confidence 53
No 57
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.41 E-value=5.3e-13 Score=87.59 Aligned_cols=65 Identities=22% Similarity=0.384 Sum_probs=51.4
Q ss_pred EEEEeeCCCCCCCceeEeEEeecceeeecc----cCCCceEEEccCccEEEeccCCCCCCcceEEEeecccCCe
Q psy5694 37 AVLRCQIPSYMSEYIIVTSWIQDDVNIYLN----TDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGE 106 (129)
Q Consensus 37 AvL~C~vp~~~~~~v~v~sW~~d~~~i~~~----~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~ltge 106 (129)
|.|.|.+.++|. |.+.|.+++....+. ...++|+.+.++|.|.|.+++.+|+| .|+|.|.|.+ |.
T Consensus 1 v~l~C~~~G~P~---P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~I~~v~~~D~G-~Y~C~a~N~~-G~ 69 (79)
T cd05734 1 VTLNCSAEGYPP---PTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEEDSG-YYLCKVSNDV-GA 69 (79)
T ss_pred CEeEeeCeEeCC---CEEEEEECCCccccccccccccCCCEEEecCCeEEECcCCcccCE-EEEEEEEeCC-CC
Confidence 579999998874 679999975221111 12467898889999999999999997 9999999998 54
No 58
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.40 E-value=7.6e-13 Score=85.63 Aligned_cols=70 Identities=17% Similarity=0.225 Sum_probs=53.5
Q ss_pred EEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecccCCeEEecccceEE
Q psy5694 37 AVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRL 116 (129)
Q Consensus 37 AvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~ltge~k~S~~~~~L 116 (129)
++|.|.+.+.|+ |.++|++++..+.+ +.......+|.|.|.+++.+|.| .|+|.|.|.+ |+.+. ...|
T Consensus 1 ~~L~C~~~G~P~---P~v~W~k~~~~~~~----~~~~~~~~~~~L~I~~v~~~D~G-~Y~C~a~N~~-G~~~~---~~~l 68 (71)
T cd05876 1 LVLECIAEGLPT---PEVHWDRIDGPLSP----NRTKKLNNNKTLQLDNVLESDDG-EYVCTAENSE-GSARH---HYTV 68 (71)
T ss_pred CEEEEEeeEecC---CeEEEEECCcCCCC----CceeEEcCCCEEEEcccCHHhCE-EEEEEEEcCC-CeEEE---EEEE
Confidence 479999998884 67999999866532 12333457899999999999997 9999999999 66433 3356
Q ss_pred EE
Q psy5694 117 SI 118 (129)
Q Consensus 117 ~V 118 (129)
.|
T Consensus 69 ~V 70 (71)
T cd05876 69 TV 70 (71)
T ss_pred EE
Confidence 55
No 59
>KOG3513|consensus
Probab=99.40 E-value=9.4e-13 Score=121.45 Aligned_cols=86 Identities=21% Similarity=0.400 Sum_probs=73.0
Q ss_pred eeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecccCC
Q psy5694 26 NYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITG 105 (129)
Q Consensus 26 ~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~ltg 105 (129)
+..+.|..|.+|+|.|.+.++| .++++|.+++..+. .++||.++++|.|.|.|++.+|+| .|.|.|.|++ |
T Consensus 433 ~~~~~a~~g~~v~i~C~~~asP---~p~~~W~k~~~~~~----~~~r~~i~edGtL~I~n~t~~DaG-~YtC~A~N~~-G 503 (1051)
T KOG3513|consen 433 ERKVMAVVGGTVTIDCKPFASP---KPKVSWLKGGEKLL----QSGRIRILEDGTLEISNVTRSDAG-KYTCVAENKL-G 503 (1051)
T ss_pred ceEEEEEeCCeEEEeeccCCCC---cceEEEEcCCcccc----cCceEEECCCCcEEecccCcccCc-EEEEEEEccc-C
Confidence 3334799999999999999888 47899999986332 579999999999999999999998 9999999999 6
Q ss_pred eEEecccceEEEEecCCC
Q psy5694 106 ESQASVFQTRLSITGKLK 123 (129)
Q Consensus 106 e~k~S~~~~~L~V~ep~~ 123 (129)
.. .+ .|.|+|+++..
T Consensus 504 ~a--~~-~~~L~Vkd~tr 518 (1051)
T KOG3513|consen 504 KA--ES-TGNLIVKDATR 518 (1051)
T ss_pred cc--ce-EEEEEEecCce
Confidence 63 44 67999998754
No 60
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=99.39 E-value=2e-12 Score=88.87 Aligned_cols=74 Identities=15% Similarity=0.204 Sum_probs=57.8
Q ss_pred EEEeCCeEEEEeeCCCCCCC--ceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecccCCeE
Q psy5694 30 NVILGNTAVLRCQIPSYMSE--YIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGES 107 (129)
Q Consensus 30 ~V~~GntAvL~C~vp~~~~~--~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~ltge~ 107 (129)
.+..|.++.|.|.......+ ..+.+.|.||+.+|.. +.+. +..+|.|.|.+|+.+|+| .|.|.|.|...+..
T Consensus 6 ~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~----~~~~-~~~~~~L~I~~v~~~DsG-~YtC~~~n~~~~~~ 79 (92)
T cd05757 6 ILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEG----DRKR-FVKGSKLLIQNVTEEDAG-NYTCKLTFTHNGKQ 79 (92)
T ss_pred EEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCC----CccE-EecCCEEEEeeCChhhCE-EEEEEEEecCCCEE
Confidence 67899999999998654422 3467999999988742 2333 338899999999999997 99999999986664
Q ss_pred Ee
Q psy5694 108 QA 109 (129)
Q Consensus 108 k~ 109 (129)
..
T Consensus 80 ~~ 81 (92)
T cd05757 80 YN 81 (92)
T ss_pred EE
Confidence 33
No 61
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=99.39 E-value=2.8e-12 Score=85.88 Aligned_cols=81 Identities=19% Similarity=0.360 Sum_probs=58.9
Q ss_pred EEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecccCCeEEe
Q psy5694 30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQA 109 (129)
Q Consensus 30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~ltge~k~ 109 (129)
.+..|++|.|+|.+.+ + .+.+.|++++..+.+......|+.+.+ +.|.|.+++.+|.| .|+|.|.|...++.
T Consensus 7 ~v~~g~~v~L~C~~~~-p---~~~i~W~k~~~~~~~~~~~~~~~~~~~-~~L~I~~~~~~D~G-~Y~C~a~~~~~~~~-- 78 (89)
T cd04979 7 TVVEGNSVFLECSPKS-N---LASVVWLFQGGPLQRKEEPEERLLVTE-DGLLIRSVSPADAG-VYTCQSVEHGFKQT-- 78 (89)
T ss_pred EEECCCcEEEEEeCCC-C---CceEEEEECCcccccccCcCceEEEcC-CCEEEccCCHHHCE-EEEEEEecCcccee--
Confidence 7899999999999865 3 256899999866543211135777765 55999999999997 99999998754443
Q ss_pred cccceEEEEe
Q psy5694 110 SVFQTRLSIT 119 (129)
Q Consensus 110 S~~~~~L~V~ 119 (129)
+. ...|.|-
T Consensus 79 ~~-~~~l~V~ 87 (89)
T cd04979 79 LA-TYSLNVL 87 (89)
T ss_pred Ee-EEEEEEe
Confidence 33 3355554
No 62
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.38 E-value=2.3e-12 Score=88.53 Aligned_cols=75 Identities=17% Similarity=0.243 Sum_probs=56.4
Q ss_pred eeeEEEeCCeEEEEeeCCCC----CCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecc
Q psy5694 27 YEHNVILGNTAVLRCQIPSY----MSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNK 102 (129)
Q Consensus 27 ~~~~V~~GntAvL~C~vp~~----~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~ 102 (129)
+. .+.+|+++.|+|.+.+. .+ .+.+.|+|++..+......+.|+.. .+|.|.|.+++.+|+| .|.|.+.|.
T Consensus 8 ~~-~v~~G~~~~L~C~~~g~~~~~~p--~~~v~Wyk~~~~~~~~~~~~~r~~~-~~~~L~I~~~~~~DsG-~Y~C~~~N~ 82 (94)
T cd05756 8 KS-YVLEGEPVVIKCPLFYSYIAQSP--GLNLTWYKSDGKTPIPTEERSRMHQ-QKDLLWFLPAALEDSG-LYTCVVRNS 82 (94)
T ss_pred EE-EEecCCCeEEECCCCCcccccCC--CceEEEEEcCCCCcccccccceeee-cCCeEEEccCCcccCe-EEEEEEcCC
Confidence 44 78899999999999873 22 3469999998543211123456644 4689999999999998 999999998
Q ss_pred cCCeE
Q psy5694 103 ITGES 107 (129)
Q Consensus 103 ltge~ 107 (129)
. |..
T Consensus 83 ~-g~~ 86 (94)
T cd05756 83 T-YCM 86 (94)
T ss_pred C-ccE
Confidence 7 663
No 63
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.36 E-value=2.1e-12 Score=86.97 Aligned_cols=75 Identities=25% Similarity=0.325 Sum_probs=52.9
Q ss_pred CCeEEEEeeCCCCCCCceeEeEEeecc----eeeecccCCCceEEEccC----------ccEEEeccCCCCCCcceEEEe
Q psy5694 34 GNTAVLRCQIPSYMSEYIIVTSWIQDD----VNIYLNTDTGGKYVVLSS----------GDLYVFNATPNDGYKSYRCRT 99 (129)
Q Consensus 34 GntAvL~C~vp~~~~~~v~v~sW~~d~----~~i~~~~~~~~ry~vlps----------G~L~I~nv~~~D~g~~Y~C~a 99 (129)
|++|.|.|.+.+.|. |.++|++++ ..+.+. ...+..++.. +.|.|++|+.+|+| .|+|.|
T Consensus 1 G~~v~L~C~~~g~P~---P~i~W~k~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G-~Y~C~A 74 (90)
T cd05858 1 GSTVEFVCKVYSDAQ---PHIQWLKHVEKNGSKYGPD--GLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAG-EYTCLA 74 (90)
T ss_pred CCeEEEEEEEecCCC---CEEEEEEecccCCcEeCCC--CCeeEEEeccCCceecCCceeEEEEccCCHHHCE-EEEEEE
Confidence 789999999988874 679999853 233221 1112223221 46999999999997 999999
Q ss_pred ecccCCeEEecccceEEEE
Q psy5694 100 VNKITGESQASVFQTRLSI 118 (129)
Q Consensus 100 ~N~ltge~k~S~~~~~L~V 118 (129)
.|.+ |+... .+.|.|
T Consensus 75 ~N~~-G~~~~---~a~L~V 89 (90)
T cd05858 75 GNSI-GISHH---SAWLTV 89 (90)
T ss_pred EeCC-Ccccc---eEEEEE
Confidence 9999 65322 457776
No 64
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.35 E-value=1.7e-12 Score=84.36 Aligned_cols=60 Identities=18% Similarity=0.181 Sum_probs=49.7
Q ss_pred EEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecccCCe
Q psy5694 38 VLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGE 106 (129)
Q Consensus 38 vL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~ltge 106 (129)
.|.|.+.+.|+ +.+.|++|+..|.+ +.++ ....+.|.|.|++.+|+| .|+|.|.|.+++.
T Consensus 2 ~l~c~v~g~P~---p~v~W~k~g~~l~~----~~~~-~~~~~~L~I~~v~~~D~G-~YtC~a~N~~g~~ 61 (71)
T cd04976 2 RLPVKVKAYPP---PEIQWYKNGKLISE----KNRT-KKSGHSLTIKDVTEEDAG-NYTVVLTNKQAKL 61 (71)
T ss_pred EEEeEEEEeCC---CEEEEEECCEECCC----CCEE-EcCCCEEEECcCCHHHCE-EEEEEEEcCCccE
Confidence 68999998885 56899999988743 2455 456789999999999997 9999999999544
No 65
>KOG4221|consensus
Probab=99.35 E-value=2.5e-12 Score=119.60 Aligned_cols=89 Identities=21% Similarity=0.483 Sum_probs=79.5
Q ss_pred eeeeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEE
Q psy5694 19 QKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCR 98 (129)
Q Consensus 19 q~y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~ 98 (129)
-+|..++++. ++..|++|.|+|.+-+ +.++.+.|+||+.+|. .++|++++|||.|+|.++++.|.| .|||.
T Consensus 141 ~~f~~~~~~~-t~~~g~ta~f~c~vn~---e~~p~i~w~kn~~pl~----~~~r~i~lpsG~L~I~~~qp~d~g-~yrc~ 211 (1381)
T KOG4221|consen 141 ADFALQPEST-TLLYGQTALFSCEVNA---EPVPTIMWLKNDQPLP----LDSRVIVLPSGALEISGLQPSDTG-EYRCV 211 (1381)
T ss_pred CccccCccce-eEecCCcEEEEEEEcC---ccCceeEEeccccccc----CCCcEEEcCCCcEEecccccCCCc-eEEEE
Confidence 5799999999 9999999999999986 4467899999998773 467999999999999999999998 99999
Q ss_pred eecccCCeEEecccceEEEEe
Q psy5694 99 TVNKITGESQASVFQTRLSIT 119 (129)
Q Consensus 99 a~N~ltge~k~S~~~~~L~V~ 119 (129)
+.+. +..+.|+ .|+|+|.
T Consensus 212 vt~g--~~~r~S~-~a~ltv~ 229 (1381)
T KOG4221|consen 212 VTGG--ASQRTSN-EAELTVL 229 (1381)
T ss_pred EecC--CcCCccc-eeEEEec
Confidence 9997 5667777 8899998
No 66
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=99.35 E-value=3.6e-12 Score=88.01 Aligned_cols=77 Identities=16% Similarity=0.260 Sum_probs=57.1
Q ss_pred eeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeeccee-eecc---cCCCceEEEcc----CccEEEeccCCCCCCcceE
Q psy5694 25 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVN-IYLN---TDTGGKYVVLS----SGDLYVFNATPNDGYKSYR 96 (129)
Q Consensus 25 v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~-i~~~---~~~~~ry~vlp----sG~L~I~nv~~~D~g~~Y~ 96 (129)
..+. .|..|++|.|+|.+.+.+ .+.+.|.+++.. |... ...+.||.+.. ++.|.|+||+.+|+| .|.
T Consensus 4 ~~~~-tv~~G~tv~L~C~v~g~~---~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G-~Yt 78 (95)
T cd05882 4 TQDE-TVAVGGTVTLKCGVKEHD---NSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEG-EYT 78 (95)
T ss_pred cccE-EEecCCcEEEEEEEeCCC---CCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCE-EEE
Confidence 3455 899999999999998866 367999998733 2211 01357887652 468999999999998 999
Q ss_pred EEeecccCCe
Q psy5694 97 CRTVNKITGE 106 (129)
Q Consensus 97 C~a~N~ltge 106 (129)
|.+.....++
T Consensus 79 C~~~t~~~~~ 88 (95)
T cd05882 79 CSIFTMPVRT 88 (95)
T ss_pred EEEEeecccc
Confidence 9999744333
No 67
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.35 E-value=3.5e-12 Score=86.67 Aligned_cols=71 Identities=24% Similarity=0.368 Sum_probs=56.1
Q ss_pred eEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEc-cCc---cEEEeccCCCCCCcceEEEeecccC
Q psy5694 29 HNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVL-SSG---DLYVFNATPNDGYKSYRCRTVNKIT 104 (129)
Q Consensus 29 ~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vl-psG---~L~I~nv~~~D~g~~Y~C~a~N~lt 104 (129)
+.+.+|++|.|.|.+.+.|. +.+.|++++..+. .+++|.+. .+| .|.|.+++.+|+| .|.|.|.|.+
T Consensus 11 v~v~eG~~v~L~C~v~g~P~---p~i~W~k~~~~~~----~~~~~~~~~~~~~~~~L~I~~~~~~D~G-~Y~C~a~N~~- 81 (92)
T cd05891 11 VTIMEGKTLNLTCTVFGNPD---PEVIWFKNDQDIE----LSEHYSVKLEQGKYASLTIKGVTSEDSG-KYSINVKNKY- 81 (92)
T ss_pred EEEcCCCEEEEEEEEEEeCC---CeEEEEECCEECC----CCCCEEEEEcCCCEEEEEECCCChhhCE-EEEEEEEeCC-
Confidence 38899999999999877763 5689999987663 23556542 333 7999999999997 9999999999
Q ss_pred CeEE
Q psy5694 105 GESQ 108 (129)
Q Consensus 105 ge~k 108 (129)
|+.+
T Consensus 82 G~~~ 85 (92)
T cd05891 82 GGET 85 (92)
T ss_pred Ccee
Confidence 5533
No 68
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.34 E-value=5.6e-12 Score=81.83 Aligned_cols=65 Identities=17% Similarity=0.314 Sum_probs=50.6
Q ss_pred CCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecccCCeEEec
Q psy5694 34 GNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQAS 110 (129)
Q Consensus 34 GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~ltge~k~S 110 (129)
|+++.|.|.+.+.|. |.++|++++..|.+ +.++.+ ..+.|.|.|++ |.| .|+|.|.|.+ |+...+
T Consensus 1 G~~v~L~C~a~G~P~---P~v~W~k~g~~l~~----~~~~~~-~~~~L~i~~~~--d~G-~Y~C~A~N~~-G~~~~~ 65 (69)
T cd05739 1 GGSVNLTCVAVGAPM---PYVKWMKGGEELTK----EDEMPV-GRNVLELTNIY--ESA-NYTCVAISSL-GMIEAT 65 (69)
T ss_pred CCeEEEEEEeeecCC---CEEEEEECCEECCC----ccceec-CccEEEEeccc--cCe-eEEEEEEeCC-CEEEEE
Confidence 789999999998884 67999999977743 244433 45679999985 776 9999999999 775444
No 69
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.33 E-value=1.7e-12 Score=84.96 Aligned_cols=69 Identities=16% Similarity=0.212 Sum_probs=52.1
Q ss_pred EEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecccCCeEEecccceEE
Q psy5694 37 AVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRL 116 (129)
Q Consensus 37 AvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~ltge~k~S~~~~~L 116 (129)
+.|.|.+.++|+ |.++|++|+..|.. +.+ +..++.|.|.+++.+|.| .|+|.|.|.+ |+...+. ...|
T Consensus 1 ~~~~c~v~G~P~---P~v~W~k~g~~l~~----~~~--~~~~~~L~I~~v~~~D~G-~YtC~a~N~~-G~~~~~~-t~~l 68 (70)
T cd05864 1 VKIPVKYYGYPP---PEVKWYKNGQLIVL----NHT--FKRGVHLTIYEVTEKDAG-NYTVVLTNPI-TKEEQRH-TFQL 68 (70)
T ss_pred CEEEeEEEEeCC---CEEEEEECCEECCC----CCE--EccCCEEEECcCCHHHCE-EEEEEEEECC-CceeeEE-EEEE
Confidence 468999998885 67899999988743 233 344568999999999997 9999999999 5433433 3344
Q ss_pred E
Q psy5694 117 S 117 (129)
Q Consensus 117 ~ 117 (129)
+
T Consensus 69 ~ 69 (70)
T cd05864 69 V 69 (70)
T ss_pred E
Confidence 4
No 70
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.33 E-value=3.2e-12 Score=85.98 Aligned_cols=71 Identities=17% Similarity=0.147 Sum_probs=55.9
Q ss_pred eeEeeeeeeEEEeCCeEEEEeeCCCCCCCcee-EeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEe
Q psy5694 21 YEINVNYEHNVILGNTAVLRCQIPSYMSEYII-VTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRT 99 (129)
Q Consensus 21 y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~-v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a 99 (129)
|...+++. .|..|++|.|.|.+.+.|. | .+.|.+|+..|.. ++.. ..+.|.|.++. |+| .|+|.|
T Consensus 1 f~~~P~~~-~v~~G~~v~l~C~a~G~P~---P~~I~W~k~g~~l~~------~~~~-~~s~L~i~~~~--d~g-~Y~C~A 66 (81)
T cd05749 1 FTVEPEDL-SVTANTPFNLTCQAVGPPE---PVEILWWQGGSPLGD------PPAP-SPSVLNVPGLN--ETS-KFSCEA 66 (81)
T ss_pred CcCCCCce-EEcCCCCEEEEEEeeeecC---CeEEEEEECCEECCC------CCCC-CCCEEEEcccc--CCe-EEEEEE
Confidence 44567777 9999999999999988874 6 5999999977732 2222 34689999984 776 999999
Q ss_pred ecccCCe
Q psy5694 100 VNKITGE 106 (129)
Q Consensus 100 ~N~ltge 106 (129)
.|.+ |+
T Consensus 67 ~N~~-G~ 72 (81)
T cd05749 67 HNAK-GV 72 (81)
T ss_pred Eecc-Cc
Confidence 9999 65
No 71
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=99.33 E-value=6.2e-12 Score=82.63 Aligned_cols=63 Identities=19% Similarity=0.370 Sum_probs=50.1
Q ss_pred EEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEE-ccCccEEEeccCC----CCCCcceEEEeecccCCe
Q psy5694 37 AVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVV-LSSGDLYVFNATP----NDGYKSYRCRTVNKITGE 106 (129)
Q Consensus 37 AvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~v-lpsG~L~I~nv~~----~D~g~~Y~C~a~N~ltge 106 (129)
+.|.|.+.+.|+ +.++|++|+..|.+. .+.++.+ .++|.|.|.+++. +|+| .|+|.|.|.+ |+
T Consensus 1 i~l~C~~~G~P~---P~v~W~k~g~~l~~~--~~~~~~~~~~~g~L~i~~~~~~~~~~d~G-~Y~C~A~N~~-G~ 68 (77)
T cd05733 1 IVIKCEAKGNPP---PTFSWTRNGTHFDPE--KDPRVTMKPDSGTLVIDNMNGGRAEDYEG-EYQCYASNEL-GT 68 (77)
T ss_pred CEEEeeCcccCC---CeEEEEECCeECCCC--CCCCEEEeCCCCEEEEeccCCCCCcCCCE-EEEEEEEcCC-Cc
Confidence 479999988874 679999999777442 3456665 4689999999965 6886 9999999999 65
No 72
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.32 E-value=7e-12 Score=87.30 Aligned_cols=78 Identities=17% Similarity=0.176 Sum_probs=60.1
Q ss_pred EEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEcc---------CccEEEeccCCCCCCcceEEEee
Q psy5694 30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLS---------SGDLYVFNATPNDGYKSYRCRTV 100 (129)
Q Consensus 30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlp---------sG~L~I~nv~~~D~g~~Y~C~a~ 100 (129)
.+..|..+.|.|.+-++|+ |.++|+||+.+|..+ .+..+.. .+.|.|.+++.+|.| .|.|.|.
T Consensus 14 ~~~~~~~~~l~~~v~g~P~---P~v~W~kdg~~l~~~----~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G-~Ytc~A~ 85 (101)
T cd05859 14 FANLHEVKEFVVEVEAYPP---PQIRWLKDNRTLIEN----LTEITTSEHNVQETRYVSKLKLIRAKEEDSG-LYTALAQ 85 (101)
T ss_pred EEecCCcEEEEEEEEEeCC---CceEEEECCEECcCC----cceEEeccccccceeeccEEEEeeCCHHHCE-EEEEEEE
Confidence 7889999999999999985 579999999888532 2222211 367999999999998 9999999
Q ss_pred cccCCeEEecccceEEEEe
Q psy5694 101 NKITGESQASVFQTRLSIT 119 (129)
Q Consensus 101 N~ltge~k~S~~~~~L~V~ 119 (129)
|.. |+... ...|.|+
T Consensus 86 N~~-g~~~~---t~~l~V~ 100 (101)
T cd05859 86 NED-AVKSY---TFALQIQ 100 (101)
T ss_pred cCC-ceEEE---EEEEEEE
Confidence 998 66433 3466654
No 73
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.32 E-value=9.4e-12 Score=80.41 Aligned_cols=63 Identities=22% Similarity=0.300 Sum_probs=51.5
Q ss_pred eEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEcc---CccEEEeccCCCCCCcceEEEeecccCCeE
Q psy5694 36 TAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLS---SGDLYVFNATPNDGYKSYRCRTVNKITGES 107 (129)
Q Consensus 36 tAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlp---sG~L~I~nv~~~D~g~~Y~C~a~N~ltge~ 107 (129)
++.|.|.+.+.|+ |.+.|++|+..|. .++|+.+.. .+.|.|.+++.+|.| .|.|.|.|.+ |+.
T Consensus 1 ~~~l~c~~~G~P~---p~v~W~k~g~~l~----~~~~~~~~~~~~~~~L~I~~~~~~D~G-~Y~C~a~N~~-G~~ 66 (74)
T cd05748 1 SVRLEVPISGRPT---PTVTWSKDGKPLK----LSGRVQIETTASSTSLVIKNAERSDSG-KYTLTLKNPA-GEK 66 (74)
T ss_pred CEEEEeeEeeeCC---CeEEEEECCEEcC----CCCeEEEEECCCeEEEEECCCCcCcCE-EEEEEEECCC-ccE
Confidence 3679999998884 6799999997773 346777653 457999999999998 9999999998 653
No 74
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.31 E-value=1.1e-11 Score=86.87 Aligned_cols=79 Identities=23% Similarity=0.342 Sum_probs=60.8
Q ss_pred eCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEc--c-----CccEEEeccC-CCCCCcceEEEeecccC
Q psy5694 33 LGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVL--S-----SGDLYVFNAT-PNDGYKSYRCRTVNKIT 104 (129)
Q Consensus 33 ~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vl--p-----sG~L~I~nv~-~~D~g~~Y~C~a~N~lt 104 (129)
.|.+|.|.|.+.+.|+ +.++|.+|+..|.+ .+.||.+. . .+.|.|.+++ .+|.| .|+|.|.|.+
T Consensus 22 ~g~~v~L~C~a~G~P~---p~i~W~k~g~~l~~---~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G-~Y~C~A~N~~- 93 (109)
T cd05773 22 GSSDANLVCQAQGVPR---VQFRWAKNGVPLDL---GNPRYEETTEHTGTVHTSILTIINVSAALDYA-LFTCTAHNSL- 93 (109)
T ss_pred CCCEEEEEEECcccCC---CEEEEEECCEECCC---CCCeEEEEeeccCccceeEEEECcCCccCCCE-EEEEEEEeCC-
Confidence 4789999999987764 57999999977743 24577542 2 3579999998 58997 9999999999
Q ss_pred CeEEecccceEEEEecCC
Q psy5694 105 GESQASVFQTRLSITGKL 122 (129)
Q Consensus 105 ge~k~S~~~~~L~V~ep~ 122 (129)
|+. +. ...|.|.+++
T Consensus 94 G~~--~~-~i~L~~~~~p 108 (109)
T cd05773 94 GED--SL-DIQLVSTSRP 108 (109)
T ss_pred ccC--cE-EEEEEecCCC
Confidence 774 33 5588888764
No 75
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=99.30 E-value=1.6e-11 Score=84.36 Aligned_cols=85 Identities=14% Similarity=0.269 Sum_probs=60.1
Q ss_pred eeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc-eeeecc---cCCCceEEEc----cCccEEEeccCCCCCCcce
Q psy5694 24 NVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-VNIYLN---TDTGGKYVVL----SSGDLYVFNATPNDGYKSY 95 (129)
Q Consensus 24 ~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-~~i~~~---~~~~~ry~vl----psG~L~I~nv~~~D~g~~Y 95 (129)
..++. .|.+|++|.|+|.+.+.+ .+.+.|.+.+ ..|... ...++||.+. .++.|.|.|++.+|+| .|
T Consensus 3 ~~~~v-~v~eG~~v~L~C~~~~~p---~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG-~Y 77 (95)
T cd07701 3 LTQNV-TVVEGGTANLTCRVDQND---NTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEG-QY 77 (95)
T ss_pred ccceE-EEecCCcEEEEEEEecCC---ceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCE-EE
Confidence 45566 899999999999998766 3568998643 333211 1135788764 3467999999999997 99
Q ss_pred EEEeecccCCeEEecccceEEEE
Q psy5694 96 RCRTVNKITGESQASVFQTRLSI 118 (129)
Q Consensus 96 ~C~a~N~ltge~k~S~~~~~L~V 118 (129)
.|.+.+. .+. +. .|.|+|
T Consensus 78 ~C~~~t~-~~~---~~-~~~l~v 95 (95)
T cd07701 78 TCSLFTM-PVK---TS-KAYLTV 95 (95)
T ss_pred EEEeEee-cCc---cE-EEEEEC
Confidence 9999984 233 33 456664
No 76
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=99.29 E-value=1.3e-11 Score=83.00 Aligned_cols=68 Identities=21% Similarity=0.371 Sum_probs=53.3
Q ss_pred EeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCC-CCCCcceEEEeecccCCeE
Q psy5694 32 ILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATP-NDGYKSYRCRTVNKITGES 107 (129)
Q Consensus 32 ~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~-~D~g~~Y~C~a~N~ltge~ 107 (129)
..|++|.|.|.+.+.| .+.++|++++..|... .+.+|. +.+|.|.|.++.. +|+| .|+|+|.|.+ |+.
T Consensus 17 ~~~~~~~l~C~~~g~p---~p~i~W~k~~~~l~~~--~~~~~~-~~~~~L~i~~~~~~~d~G-~Y~C~a~N~~-G~~ 85 (91)
T cd04967 17 SDEGKVSLNCRARGSP---PPTYRWLMNGTEIDDE--PDSRYS-LVGGNLVISNPSKAKDAG-RYQCLASNIV-GTV 85 (91)
T ss_pred CCCCEEEEEEeeeEcC---CCEEEEEECCEECCCC--CCCCEE-EECCEEEEecCCccCCCE-EEEEEEEcCC-CEE
Confidence 4567899999997665 3689999999777321 245664 4689999999985 8997 9999999999 663
No 77
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=99.29 E-value=1.5e-11 Score=81.29 Aligned_cols=64 Identities=14% Similarity=0.266 Sum_probs=50.1
Q ss_pred EEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEE-ccCccEEEeccCC---C-CCCcceEEEeecccCCeE
Q psy5694 37 AVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVV-LSSGDLYVFNATP---N-DGYKSYRCRTVNKITGES 107 (129)
Q Consensus 37 AvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~v-lpsG~L~I~nv~~---~-D~g~~Y~C~a~N~ltge~ 107 (129)
++|.|.+.+.|+ |.++|++|+..|.. ..+.|+.+ ..+|.|.|.+++. + |+| .|+|.|.|.+ |+.
T Consensus 1 ~~l~C~~~G~P~---P~v~W~k~g~~~~~--~~~~~~~~~~~~~~L~i~~~~~~~~~~d~G-~Y~C~A~N~~-G~~ 69 (77)
T cd05875 1 IIIECEAKGNPV---PTFQWTRNGKFFNV--AKDPRVSMRRRSGTLVIDFSGGGRPEDYEG-EYQCFARNNL-GTA 69 (77)
T ss_pred CEEEEeccccCC---CEEEEEECCEEccC--cCCCcEEEeCCCceEEEeccCCCCCCCCCE-EEEEEEEecc-ceE
Confidence 479999999884 78999999976532 24567776 4789999999853 4 576 9999999999 663
No 78
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.29 E-value=7.8e-12 Score=79.44 Aligned_cols=69 Identities=19% Similarity=0.325 Sum_probs=51.2
Q ss_pred EEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEE-ccCccEEEeccCCCCCCcceEEEeecccCCeEEecccceE
Q psy5694 37 AVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVV-LSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTR 115 (129)
Q Consensus 37 AvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~v-lpsG~L~I~nv~~~D~g~~Y~C~a~N~ltge~k~S~~~~~ 115 (129)
+.|.|.+.+.|+ |.++|.+++..+.. ++... ..++.|.|.+++.+|+| .|+|.|.|.. |.... ...
T Consensus 1 v~l~C~~~g~P~---p~v~W~k~~~~~~~-----~~~~~~~~~~~L~i~~v~~~D~G-~Y~C~a~N~~-G~~~~---~~~ 67 (71)
T cd05731 1 LLLECIAEGLPT---PEISWIKIGGELPA-----DRTKFENFNKTLKIDNVSEEDDG-EYRCTASNSL-GSARH---TIS 67 (71)
T ss_pred CEEEEEeeEecC---CeEEEEECCeECCC-----CceeEecCCCEEEECCCCHHHCE-EEEEEEEeCC-ceEEE---EEE
Confidence 469999988874 57999999866532 23322 34678999999999997 9999999998 65332 335
Q ss_pred EEE
Q psy5694 116 LSI 118 (129)
Q Consensus 116 L~V 118 (129)
|.|
T Consensus 68 l~V 70 (71)
T cd05731 68 VTV 70 (71)
T ss_pred EEE
Confidence 555
No 79
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=99.29 E-value=2.7e-11 Score=82.77 Aligned_cols=83 Identities=14% Similarity=0.185 Sum_probs=58.5
Q ss_pred eEEEeCCeEEEEeeCCCCCCCceeEeEEeecc--eeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecccCCe
Q psy5694 29 HNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD--VNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGE 106 (129)
Q Consensus 29 ~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~--~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~ltge 106 (129)
+++.+|++|.|.|.. ..| .+.++|.+++ ..+......++|+... ++.|.|++++.+|+| .|+|.|.|...|+
T Consensus 6 ~~~~eG~~v~L~C~~-~~p---~p~v~Wykq~~g~~~~~~~~~~~r~~~~-~~~L~I~~~~~~DsG-~Y~C~a~~~~~~~ 79 (91)
T cd05871 6 VYGVENNSTFLECLP-KSP---QASVKWLFQRGGDQRKEEVKTEERLIHT-ERGLLLRSLQRSDAG-VYTCTAVEHSFSQ 79 (91)
T ss_pred EEEecCCcEEEEEEC-CCC---CceEEEEEECCCCCccccccccccEEEe-cCeEEEeeCChhHCE-EEEEEEEccCCeE
Confidence 478999999999995 444 3568999854 2211111134678664 567999999999997 9999999655466
Q ss_pred EEecccceEEEEec
Q psy5694 107 SQASVFQTRLSITG 120 (129)
Q Consensus 107 ~k~S~~~~~L~V~e 120 (129)
... .+.|+|-+
T Consensus 80 ~~~---~~~l~v~~ 90 (91)
T cd05871 80 TLA---KYTLHVIE 90 (91)
T ss_pred EEE---EEEEEEec
Confidence 544 45777754
No 80
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.27 E-value=9.7e-12 Score=80.57 Aligned_cols=69 Identities=20% Similarity=0.309 Sum_probs=52.8
Q ss_pred EEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecccCCe
Q psy5694 30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGE 106 (129)
Q Consensus 30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~ltge 106 (129)
.+-.|+++.|.|.+.+.|. +.++|++++..+.+. .........+.|.|.+++.+|.| .|.|.|.|.. |+
T Consensus 5 ~~~~G~~v~L~C~~~g~p~---p~i~W~k~~~~~~~~---~~~~~~~~~~~L~i~~v~~~D~G-~Y~C~a~N~~-G~ 73 (82)
T cd05856 5 ARPVGSSVRLKCVASGNPR---PDITWLKDNKPLTPT---EIGESRKKKWTLSLKNLKPEDSG-KYTCHVSNRA-GE 73 (82)
T ss_pred eccCCCeEEEEEEeeEeCC---CcEEEEECCcCCcCC---ccceecCceEEEEEccCChhhCE-EEEEEEEcCC-cc
Confidence 4567999999999987764 468999998666332 11222234578999999999997 9999999998 65
No 81
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.27 E-value=6.7e-12 Score=82.98 Aligned_cols=64 Identities=16% Similarity=0.143 Sum_probs=52.6
Q ss_pred EEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecccCCeEEe
Q psy5694 38 VLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQA 109 (129)
Q Consensus 38 vL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~ltge~k~ 109 (129)
.|.|.+.++|+ |.++|.||+.+|.. ...+|.+ .++.|.|.||+.+|+| .|+|.|.|...|+.+.
T Consensus 2 ~l~c~v~g~P~---P~v~W~kdg~~l~~---~~~~~~~-~~~~L~I~~v~~~D~G-~YtC~a~~~~~~~~~~ 65 (72)
T cd07702 2 RLTPKVKAFPA---PEVIWLKDGLPAAE---KCSRYHV-DGYSLVIKDVTEEDAG-IYTILLGIKQYNLFKN 65 (72)
T ss_pred eEEeeEEEcCC---CeEEEEECCEECCC---CCcEEEe-CCCEEEECcCCHHHCE-EEEEEEEccccceEee
Confidence 58999998885 56899999987743 2357765 4568999999999997 9999999998888654
No 82
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.26 E-value=7.3e-12 Score=81.68 Aligned_cols=56 Identities=21% Similarity=0.223 Sum_probs=46.4
Q ss_pred EEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecccCC
Q psy5694 37 AVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITG 105 (129)
Q Consensus 37 AvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~ltg 105 (129)
+.|.|.+.++|+ |.++|+||+..|.. +. ..+.|.|.++..+|+| .|.|.|.|.+++
T Consensus 1 ~~l~c~v~g~P~---P~v~W~kdg~~l~~------~~---~~~~L~i~~v~~~D~G-~YtC~a~N~~g~ 56 (67)
T cd05863 1 VKLPVKVAAYPP---PEFQWYKDGKLISG------KH---SQHSLQIKDVTEASAG-TYTLVLWNSAAG 56 (67)
T ss_pred CEEEEEEEEeCC---CEEEEEECCEECcc------cC---CcCEEEECCCCHHHCE-EEEEEEEECCcc
Confidence 368999999885 67999999988742 11 3579999999999997 999999999943
No 83
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.26 E-value=2.4e-11 Score=80.96 Aligned_cols=74 Identities=19% Similarity=0.337 Sum_probs=57.4
Q ss_pred EeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecc
Q psy5694 23 INVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNK 102 (129)
Q Consensus 23 ~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~ 102 (129)
..|+.. .+.+|.+++|.|.+.+.+.. ..+.|++|+..|.. .++.|.|.++ .+|.| .|+|.|.|.
T Consensus 5 ~~P~~~-~v~~G~~V~L~C~~~~~p~~--~~~~W~kng~~l~~-----------~~~~l~i~~~-~~dsG-~Y~C~a~~~ 68 (78)
T cd05752 5 LDPPWT-TIFQGEKVTLTCNGFNSPEQ--NSTQWYHNGKLLET-----------TTNSYRIRAA-NNDSG-EYRCQTQGS 68 (78)
T ss_pred eCCCCe-EeeCCCCEEEEEeCCCCCCC--ccEEEEECCEEeec-----------cCCeEEEeec-ccCCE-EeEEECCCC
Confidence 456666 88999999999999887542 34799999976621 3578999999 99997 999999985
Q ss_pred cCCeEEecccceEEEE
Q psy5694 103 ITGESQASVFQTRLSI 118 (129)
Q Consensus 103 ltge~k~S~~~~~L~V 118 (129)
..|. +.+|.|
T Consensus 69 -----~~S~-~v~l~V 78 (78)
T cd05752 69 -----SLSD-PVHLEV 78 (78)
T ss_pred -----cCCC-CEEEeC
Confidence 3355 667764
No 84
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=99.26 E-value=2.1e-11 Score=79.29 Aligned_cols=69 Identities=23% Similarity=0.413 Sum_probs=50.1
Q ss_pred EEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEc---cCccEEEeccCCCCCCcceEEEeecccCCeEEe
Q psy5694 37 AVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVL---SSGDLYVFNATPNDGYKSYRCRTVNKITGESQA 109 (129)
Q Consensus 37 AvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vl---psG~L~I~nv~~~D~g~~Y~C~a~N~ltge~k~ 109 (129)
++|+|.+.+..+ .+.+.|++++..|......+.|+.+. ..+.|.|.+++.+|.| .|.|+|.|.+ |+...
T Consensus 1 ~~L~C~a~~~~p--~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG-~Y~C~a~N~~-g~~~~ 72 (76)
T cd05895 1 LVLRCETVSEYP--SLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNG-EYKCMVSSKL-GNDSV 72 (76)
T ss_pred CEEEEecccCCC--CCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCE-EEEEEEEeCC-CceeE
Confidence 479999875433 35689999997774322234455543 2467999999999997 9999999998 66433
No 85
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.23 E-value=4.9e-11 Score=78.78 Aligned_cols=65 Identities=18% Similarity=0.309 Sum_probs=50.2
Q ss_pred EEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEcc-CccEEEeccCCC----CCCcceEEEeecccCCeEE
Q psy5694 37 AVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLS-SGDLYVFNATPN----DGYKSYRCRTVNKITGESQ 108 (129)
Q Consensus 37 AvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlp-sG~L~I~nv~~~----D~g~~Y~C~a~N~ltge~k 108 (129)
+.|.|.+-+.| .|.++|++|+..|.. ..+.++.+.+ +|.|.|..++.+ |+| .|+|.|.|.+ |+..
T Consensus 1 ~~l~C~a~G~P---~P~i~W~k~g~~l~~--~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G-~Y~C~A~N~~-G~~~ 70 (77)
T cd05874 1 IVIQCEAKGKP---PPSFSWTRNGTHFDI--DKDPKVTMKPNTGTLVINIMNGEKAEAYEG-VYQCTARNER-GAAV 70 (77)
T ss_pred CEEEeeCcccC---CCeEEEEECCeECCC--cCCCCEEEeCCCceEEEeccccCCCCCCCE-EEEEEEEcCC-CeEE
Confidence 36999998887 478999999977633 2345666654 899999999864 676 9999999998 7743
No 86
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.23 E-value=2.3e-11 Score=81.52 Aligned_cols=60 Identities=13% Similarity=0.131 Sum_probs=47.2
Q ss_pred EEeeCCCCCCCceeEeEEeecceeeecccCCCceEEE----------ccCccEEEeccCCCCCCcceEEEeecccCCeE
Q psy5694 39 LRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVV----------LSSGDLYVFNATPNDGYKSYRCRTVNKITGES 107 (129)
Q Consensus 39 L~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~v----------lpsG~L~I~nv~~~D~g~~Y~C~a~N~ltge~ 107 (129)
|.|.+.+.|+ |.++|+||+..|.+. .++.+ ..+|.|.|.+++.+|.| .|+|+|.|.+ |+.
T Consensus 3 i~~~v~G~P~---P~v~W~k~g~~i~~~----~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G-~YtC~A~N~~-G~~ 72 (81)
T cd04971 3 IPFTVRGNPK---PTLTWYHNGAVLNES----DYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNG-NYTLVASNEY-GQD 72 (81)
T ss_pred EEEEeEeeCC---CcEEEEECCEECcCC----CceeEEEEeecccccccEEEEEECCCCcccCe-EEEEEEEeCC-CCe
Confidence 6899888884 679999999888542 22211 23678999999999998 9999999999 664
No 87
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=99.21 E-value=4.5e-11 Score=79.25 Aligned_cols=75 Identities=17% Similarity=0.225 Sum_probs=56.3
Q ss_pred eeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeeccc
Q psy5694 24 NVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKI 103 (129)
Q Consensus 24 ~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~l 103 (129)
.++.. .+..|+++.|.|.+.+..+ .+.+.|.+++..+.. +. ...+|.|.|.+++.+|+| .|+|.|.|.+
T Consensus 7 ~p~~~-~v~~G~~v~L~C~~~~~~~--~~~i~W~~~~~~~~~------~~-~~~~~~L~I~~v~~~DsG-~Y~C~a~n~~ 75 (85)
T cd05754 7 EPRSQ-EVRPGADVSFICRAKSKSP--AYTLVWTRVGGGLPS------RA-MDFNGILTIRNVQLSDAG-TYVCTGSNML 75 (85)
T ss_pred CCCce-EEcCCCCEEEEEEcCCCCC--CcEEEEEECCCcCCC------cc-cccCCEEEECCCCHHHCE-EEEEEEeccC
Confidence 34445 8899999999999865322 367999998844421 21 234789999999999997 9999999998
Q ss_pred CCeEEec
Q psy5694 104 TGESQAS 110 (129)
Q Consensus 104 tge~k~S 110 (129)
|+...+
T Consensus 76 -g~~~~~ 81 (85)
T cd05754 76 -DTDEAT 81 (85)
T ss_pred -CeEeEE
Confidence 775443
No 88
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.20 E-value=2.6e-11 Score=81.60 Aligned_cols=61 Identities=16% Similarity=0.152 Sum_probs=47.8
Q ss_pred EEeeCCCCCCCceeEeEEeecceeeecccCCCceE----EE----ccCccEEEeccCCCCCCcceEEEeecccCCeEE
Q psy5694 39 LRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKY----VV----LSSGDLYVFNATPNDGYKSYRCRTVNKITGESQ 108 (129)
Q Consensus 39 L~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry----~v----lpsG~L~I~nv~~~D~g~~Y~C~a~N~ltge~k 108 (129)
|+|.+.+.|+ |.++|++|+..|... .+. .. .-.|.|.|.+++.+|+| .|+|+|.|.+ |+..
T Consensus 3 i~~~v~G~P~---Pti~W~kng~~l~~~----~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G-~YtC~A~N~~-G~~~ 71 (79)
T cd05855 3 IPFTVKGNPK---PTLQWFHEGAILNES----EYICTKIHVINNTEYHGCLQLDNPTHLNNG-IYTLVAKNEY-GEDE 71 (79)
T ss_pred EEEEEeEeCC---CceEEEECCEECCCC----cceeeeeEeecccceEEEEEECCCCcccCE-EEEEEEEcCC-cccc
Confidence 6899988884 789999999888432 221 11 23578999999999998 9999999999 7643
No 89
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=99.17 E-value=1.5e-10 Score=80.90 Aligned_cols=72 Identities=24% Similarity=0.350 Sum_probs=54.4
Q ss_pred EEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEcc----Cc---cEEEeccCCCCCCcceEEEeecc
Q psy5694 30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLS----SG---DLYVFNATPNDGYKSYRCRTVNK 102 (129)
Q Consensus 30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlp----sG---~L~I~nv~~~D~g~~Y~C~a~N~ 102 (129)
++.+|++|.|.|.+.+.|++- .+.|..++..|... ..+||.|.. .| .|.|.|+..+|-+|.|.|.|.|.
T Consensus 12 ~~~~G~~~~L~C~~~s~P~P~--~i~W~w~~~~i~~~--~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C~a~N~ 87 (98)
T cd05898 12 YAVRGERGKVKCFIGSTPPPD--RIAWAWKENVLESG--TSERYTVERTSTGSGVLSTLTINNIMEADFQTHYNCTAWNS 87 (98)
T ss_pred EEeCCCcEEEEEEEccCCCCc--EEEEEEccccccCC--CCCCEEEEEEccCCCcEEEEEECCCccccCCcEEEEEEEeC
Confidence 889999999999998887753 34555555455432 357998853 23 49999999888545999999999
Q ss_pred cCCe
Q psy5694 103 ITGE 106 (129)
Q Consensus 103 ltge 106 (129)
+ |+
T Consensus 88 ~-G~ 90 (98)
T cd05898 88 F-GS 90 (98)
T ss_pred C-cc
Confidence 9 55
No 90
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=99.17 E-value=7.7e-11 Score=75.56 Aligned_cols=66 Identities=23% Similarity=0.432 Sum_probs=48.3
Q ss_pred EEEeeCCC-CCCCceeEeEEeecceeeecccCCCceEEE---ccCccEEEeccCCCCCCcceEEEeecccCCeEEe
Q psy5694 38 VLRCQIPS-YMSEYIIVTSWIQDDVNIYLNTDTGGKYVV---LSSGDLYVFNATPNDGYKSYRCRTVNKITGESQA 109 (129)
Q Consensus 38 vL~C~vp~-~~~~~v~v~sW~~d~~~i~~~~~~~~ry~v---lpsG~L~I~nv~~~D~g~~Y~C~a~N~ltge~k~ 109 (129)
+|.|.+.+ .|. +.+.|++|+..|.... ....+.+ ...+.|.|.+++.+|.| .|+|.|.|.+ |+...
T Consensus 2 ~l~C~~~g~~P~---p~~~W~k~g~~l~~~~-~~~~~~~~~~~~~~~L~I~~~~~~D~G-~Y~C~a~N~~-G~~~~ 71 (75)
T cd05750 2 VLKCEATSEYPS---LRFKWFKDGKELNRKN-KPRNIKIRNKKKNSELQINKAKLADSG-EYTCVVENIL-GNDTV 71 (75)
T ss_pred EEEEEccCCCCC---ceEEEEcCCeeccccC-CcceEEEEecCceEEEEEccCCcccCe-EEEEEEEEcC-CceeE
Confidence 69999998 563 6789999997774321 1111222 23578999999999997 9999999999 65433
No 91
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=99.16 E-value=1.9e-10 Score=69.01 Aligned_cols=62 Identities=18% Similarity=0.297 Sum_probs=48.9
Q ss_pred eCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeeccc
Q psy5694 33 LGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKI 103 (129)
Q Consensus 33 ~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~l 103 (129)
+|+++.|.|.+.+.+. +.+.|++++..+. ........++.|.|.+++.+|.| .|+|++.|..
T Consensus 1 ~g~~~~l~C~~~~~~~---~~v~W~~~~~~~~-----~~~~~~~~~~~L~i~~~~~~d~G-~Y~C~~~n~~ 62 (63)
T smart00408 1 EGQSVTLTCPAEGDPV---PNITWLKDGKPLP-----ESNRLSASGSTLTIKSVSLEDSG-EYTCVAENSA 62 (63)
T ss_pred CCceEEEEeeCccCCC---CeEEEEECCEECC-----CCCEEecCCcEEEEeeCCcccCE-EEEEEEecCC
Confidence 4899999999766553 4689999886663 23333456789999999999997 9999999975
No 92
>KOG4221|consensus
Probab=99.14 E-value=1.7e-10 Score=107.69 Aligned_cols=96 Identities=19% Similarity=0.330 Sum_probs=79.6
Q ss_pred eeeeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEE
Q psy5694 19 QKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCR 98 (129)
Q Consensus 19 q~y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~ 98 (129)
..|-.+++.. .|..|+.++|.|.+.+.++ +.+.|++|+..|.- .+.|+.++..|+|+|+|++..|.| .|+|+
T Consensus 238 ~~fl~~p~~~-~v~~g~~v~leCvvs~~p~---p~v~Wlrng~~i~~---ds~rivl~g~~slliS~a~~~dSg-~YtC~ 309 (1381)
T KOG4221|consen 238 LVFLDEPSNA-VVVEGDDVVLECVVSGVPK---PSVKWLRNGEKISV---DSYRIVLVGGSSLLISNATDDDSG-KYTCR 309 (1381)
T ss_pred eeeecCCCcc-ccccCCcEEEEEEecCCCC---CceEEeeCCeeeee---cceEEEEecccceEEeccccccCc-eEEEE
Confidence 4578888888 9999999999999998885 67999999977743 237888889999999999999997 99999
Q ss_pred eecccCCeEEecccceEEEEecCCCCCC
Q psy5694 99 TVNKITGESQASVFQTRLSITGKLKSLC 126 (129)
Q Consensus 99 a~N~ltge~k~S~~~~~L~V~ep~~~~~ 126 (129)
|.|. .+. ..+ .+.|.|..|++..+
T Consensus 310 Atn~--~D~-ida-saev~V~a~P~~~~ 333 (1381)
T KOG4221|consen 310 ATNT--NDS-IDA-SAEVTVLAPPGFTK 333 (1381)
T ss_pred ecCC--Ccc-ccc-ceEEEEEcCCCCCC
Confidence 9994 342 233 67999999876654
No 93
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.14 E-value=2.6e-10 Score=76.40 Aligned_cols=79 Identities=22% Similarity=0.252 Sum_probs=58.2
Q ss_pred eeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeeccc
Q psy5694 24 NVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKI 103 (129)
Q Consensus 24 ~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~l 103 (129)
++... .|.+|++++|+|..+...+ ...+.|.+++..+.. ...+++|.|.+++.+|+| .|+|.+.|..
T Consensus 5 ~~p~~-~V~~G~~vtL~C~~~~~~~--~~~~~w~k~g~~~~~---------~~~~~~l~I~~~~~~dsG-~Y~C~~~~~~ 71 (83)
T cd05753 5 QVPSR-VVFEGEPLVLRCHGWKNKP--VYKVTYYRDGKAKKY---------SHSNSNLSIPQATLSDSG-SYHCSGIIGS 71 (83)
T ss_pred ECCcc-eecCCCCEEEEeeCCCCCc--ceEEEEEECCeEccc---------cCCCceEEECccCHHHCE-EEEEEEEeCC
Confidence 44445 6889999999999865332 256899999865521 112578999999999997 9999999987
Q ss_pred CCeEEecccceEEEE
Q psy5694 104 TGESQASVFQTRLSI 118 (129)
Q Consensus 104 tge~k~S~~~~~L~V 118 (129)
|+ +.|. +-.|+|
T Consensus 72 -~~-~~s~-~~~i~~ 83 (83)
T cd05753 72 -YD-YSSE-PVSITV 83 (83)
T ss_pred -ce-ecCC-CEEEEC
Confidence 65 5565 555553
No 94
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=99.13 E-value=3.2e-10 Score=73.49 Aligned_cols=69 Identities=22% Similarity=0.312 Sum_probs=52.4
Q ss_pred EEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEE----ccCccEEEeccCCCCCCcceEEEeecccCC
Q psy5694 30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVV----LSSGDLYVFNATPNDGYKSYRCRTVNKITG 105 (129)
Q Consensus 30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~v----lpsG~L~I~nv~~~D~g~~Y~C~a~N~ltg 105 (129)
.+-.|+++.|.|.+.+++. +.+.|.+++..+... .++.. .....|.|.+++.+|.| .|.|.+.|.+ |
T Consensus 5 ~~~~G~~~~l~C~~~~~p~---~~v~W~k~~~~~~~~----~~~~~~~~~~~~~~l~i~~~~~~d~g-~Y~C~~~n~~-g 75 (85)
T cd05729 5 AVPAGSTVRLKCPASGNPR---PTITWLKDGKPFKKE----HRIGGYKVRKKKWTLILESVVPSDSG-KYTCIVENKY-G 75 (85)
T ss_pred EecCCCcEEEEEEcCCCCC---CeEEEEECCEECccc----CceeEEEccCcEEEEEEeECCcccCE-EEEEEEEECC-c
Confidence 5678999999999987763 568999998666321 12211 12357999999999997 9999999998 6
Q ss_pred eE
Q psy5694 106 ES 107 (129)
Q Consensus 106 e~ 107 (129)
+.
T Consensus 76 ~~ 77 (85)
T cd05729 76 SI 77 (85)
T ss_pred eE
Confidence 63
No 95
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=99.11 E-value=5.8e-10 Score=76.21 Aligned_cols=63 Identities=25% Similarity=0.506 Sum_probs=53.8
Q ss_pred EEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecc
Q psy5694 30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNK 102 (129)
Q Consensus 30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~ 102 (129)
.|..|+.++|+|...+.. +.+.|++++..|. .++|+.+..+| |.|.+++.+|+| .|+|.+.-.
T Consensus 7 tv~~g~~v~L~C~~~s~~----A~v~W~~ng~~l~----~~~r~~~~~~G-LlI~~~~~~dsG-~Y~C~s~E~ 69 (85)
T cd05872 7 TVAPGADVVLPCQLRSNL----ASPVWLFNGTPLN----AQFSYRVGTDG-LLILVTSPEHSG-TYRCYSEEE 69 (85)
T ss_pred EEecCCCEEEECCCCCCC----ccEEEEECCcccC----CCcceEEeCCC-CEEEECCHhhCE-EEEEEEecC
Confidence 899999999999986544 5799999998774 35899888888 669999999998 999999844
No 96
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=99.09 E-value=2.5e-10 Score=75.63 Aligned_cols=79 Identities=22% Similarity=0.268 Sum_probs=51.9
Q ss_pred CCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEE----ccCccEEEeccCCCCCCcceEEEeecccCCeEEe
Q psy5694 34 GNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVV----LSSGDLYVFNATPNDGYKSYRCRTVNKITGESQA 109 (129)
Q Consensus 34 GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~v----lpsG~L~I~nv~~~D~g~~Y~C~a~N~ltge~k~ 109 (129)
|+++.|.|.+.+.+. ..+.+.|.+++..+........+... ...+.|.|.+++.+|.| .|.|.|.|.+ |+...
T Consensus 1 Ge~~~L~C~~~g~~~-~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG-~Y~C~a~n~~-~~~~~ 77 (84)
T cd05742 1 GETLVLNCTVLTELN-EGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSG-TYTCAASSGT-MDQKE 77 (84)
T ss_pred CCeEEEEEEEEeCCC-ccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCE-EEEEEEccCC-CceEE
Confidence 789999999987621 14679998876433111000111111 12468999999999997 9999999998 55333
Q ss_pred cccceEEEE
Q psy5694 110 SVFQTRLSI 118 (129)
Q Consensus 110 S~~~~~L~V 118 (129)
| +.|.|
T Consensus 78 s---~~v~v 83 (84)
T cd05742 78 S---TKVNI 83 (84)
T ss_pred E---EEEEE
Confidence 3 35555
No 97
>KOG3513|consensus
Probab=99.07 E-value=8.8e-10 Score=102.11 Aligned_cols=97 Identities=16% Similarity=0.270 Sum_probs=77.7
Q ss_pred eeeeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEE
Q psy5694 19 QKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCR 98 (129)
Q Consensus 19 q~y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~ 98 (129)
..|...+++. .+-.|+.++|.|++.+.| .+.++|++++.+|.+. +.+.||.|. .|.|.|.||+.+|+| .|+|.
T Consensus 332 P~w~~~~~d~-~~~~gs~v~~eC~a~g~P---~p~v~WlkNg~pl~~~-~r~~~~~i~-~g~L~is~v~~~dsg-~YQC~ 404 (1051)
T KOG3513|consen 332 PYWLQKPQDT-EADTGSNVTLECKASGKP---NPTVKWLKNGEPLEPA-ERDPRYKID-DGTLIISNVQESDSG-VYQCI 404 (1051)
T ss_pred chhhccccee-EecCCCCeEEEEEecCCC---CCceEEeeCCeecCcc-CCCcceEEe-CCEEEEEecccccCe-EEEee
Confidence 4566677888 999999999999999777 4779999999888653 344558664 899999999999998 99999
Q ss_pred eecccCCeEEecccceEEEEecCCCCCC
Q psy5694 99 TVNKITGESQASVFQTRLSITGKLKSLC 126 (129)
Q Consensus 99 a~N~ltge~k~S~~~~~L~V~ep~~~~~ 126 (129)
|.|++ |-.-. .|.|.|.......+
T Consensus 405 A~Nk~-G~i~a---nA~L~V~a~~P~f~ 428 (1051)
T KOG3513|consen 405 AENKY-GTIYA---NAELKVLASAPVFP 428 (1051)
T ss_pred eeccc-ceEee---eeEEEEEccCCCCC
Confidence 99999 66444 45888886654443
No 98
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=99.03 E-value=1.8e-09 Score=72.92 Aligned_cols=70 Identities=19% Similarity=0.355 Sum_probs=51.8
Q ss_pred EEEeCCeEEEEeeCCCCCCCceeEeEEeecc-eeeecc---cCCCceEEEc----cCccEEEeccCCCCCCcceEEEeec
Q psy5694 30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-VNIYLN---TDTGGKYVVL----SSGDLYVFNATPNDGYKSYRCRTVN 101 (129)
Q Consensus 30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-~~i~~~---~~~~~ry~vl----psG~L~I~nv~~~D~g~~Y~C~a~N 101 (129)
.|.+|++|.|+|.+.+.+ .+.+.|.+-+ ..|... ...++||.+. .++.|.|.||+.+|+| .|.|.+.+
T Consensus 8 ~v~~G~~v~L~C~~~~~~---~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG-~Y~C~~~~ 83 (95)
T cd05717 8 TVVEGGTATLKCRVKNND---NSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEG-RYTCSLYT 83 (95)
T ss_pred EEcCCCCEEEEEEECCCC---CceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCE-EEEEEEec
Confidence 789999999999987654 3568998633 333211 0134788874 2457999999999997 99999997
Q ss_pred cc
Q psy5694 102 KI 103 (129)
Q Consensus 102 ~l 103 (129)
..
T Consensus 84 ~~ 85 (95)
T cd05717 84 MP 85 (95)
T ss_pred CC
Confidence 65
No 99
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.03 E-value=1.4e-09 Score=89.25 Aligned_cols=79 Identities=13% Similarity=0.194 Sum_probs=60.0
Q ss_pred EeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecc-cCCCceEEEcc-----------CccEEEeccCCCC
Q psy5694 23 INVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLN-TDTGGKYVVLS-----------SGDLYVFNATPND 90 (129)
Q Consensus 23 ~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~-~~~~~ry~vlp-----------sG~L~I~nv~~~D 90 (129)
..+++. .+..|..+.|.|.+.++|++..+.+.|.+|+..|... ...++|+.+.. +|.|.|.+|+.+|
T Consensus 225 ~~p~~~-~~~~G~~v~L~C~a~g~P~~~~~~v~W~kng~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D 303 (326)
T PHA02785 225 QLPEGV-VTSIGSNLTIACRVSLRPPTTDADVFWISNGMYYEEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEED 303 (326)
T ss_pred cCCCcE-EecCCCcEEEEEEEECCCCCCCceEEEEECCEECCCcCCCCceeEEEecCccccccceeeeEEEEECCcchhc
Confidence 344555 7788999999999998876544679999999877432 12234554422 5789999999999
Q ss_pred CCcceEEEeeccc
Q psy5694 91 GYKSYRCRTVNKI 103 (129)
Q Consensus 91 ~g~~Y~C~a~N~l 103 (129)
.| .|.|.|.|..
T Consensus 304 ~G-~Y~C~A~n~~ 315 (326)
T PHA02785 304 AT-TFTCMAFTIP 315 (326)
T ss_pred Ce-eeEEEEEecc
Confidence 96 9999999986
No 100
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=99.03 E-value=2.1e-09 Score=75.74 Aligned_cols=74 Identities=20% Similarity=0.330 Sum_probs=55.9
Q ss_pred eeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc-----eee--e-cc-------cCCCceEEEccCccEEEeccCCC
Q psy5694 25 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNI--Y-LN-------TDTGGKYVVLSSGDLYVFNATPN 89 (129)
Q Consensus 25 v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-----~~i--~-~~-------~~~~~ry~vlpsG~L~I~nv~~~ 89 (129)
+... .|.+|+.++|.|+-. | +....++|.|.. ..| + +. ..-.+|..+.++|.|.|+||+.+
T Consensus 5 ~~p~-~~~~G~~V~L~v~~~--p-~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~~v~~~ 80 (105)
T cd05774 5 LVPP-QVAEGENVLLLVHNL--P-ENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQNVTQK 80 (105)
T ss_pred ccCC-cccCCCCEEEEecCC--C-CCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEEecCCcc
Confidence 3344 789999999999853 2 335678999963 122 1 11 01358999999999999999999
Q ss_pred CCCcceEEEeeccc
Q psy5694 90 DGYKSYRCRTVNKI 103 (129)
Q Consensus 90 D~g~~Y~C~a~N~l 103 (129)
|.| .|.|.+.|.-
T Consensus 81 D~G-~Y~~~v~~~~ 93 (105)
T cd05774 81 DTG-FYTLQTITTN 93 (105)
T ss_pred cCE-EEEEEEEeCC
Confidence 998 9999999874
No 101
>smart00409 IG Immunoglobulin.
Probab=99.01 E-value=4.9e-09 Score=65.63 Aligned_cols=66 Identities=24% Similarity=0.453 Sum_probs=54.0
Q ss_pred EEEeCCeEEEEeeCCCCCCCceeEeEEeec-ceeeecccCCCceEEEccC---ccEEEeccCCCCCCcceEEEeeccc
Q psy5694 30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQD-DVNIYLNTDTGGKYVVLSS---GDLYVFNATPNDGYKSYRCRTVNKI 103 (129)
Q Consensus 30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d-~~~i~~~~~~~~ry~vlps---G~L~I~nv~~~D~g~~Y~C~a~N~l 103 (129)
.+..|+++.|.|.+.+.+ .+.+.|.++ +..+. .+.++..... +.|.|.+++.+|+| .|+|.+.+..
T Consensus 5 ~~~~g~~~~l~C~~~~~~---~~~~~W~~~~~~~v~----~~~~~~~~~~~~~~~l~i~~~~~~d~G-~Y~C~v~~~~ 74 (86)
T smart00409 5 TVKEGESVTLSCEVSGSP---PPEVTWYKQGGKLLA----ESGRFSVSRSGSNSTLTISNVTPEDSG-TYTCAATNSS 74 (86)
T ss_pred EEeCCCeEEEEEEEccCC---CCeEEEEECCCEEcC----CCCcEEEEEcCCeeEEEEEeeccccCe-EEEEEEEcCC
Confidence 788999999999998763 467899998 66653 2467766654 68999999999997 9999999876
No 102
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=99.01 E-value=4.9e-09 Score=65.63 Aligned_cols=66 Identities=24% Similarity=0.453 Sum_probs=54.0
Q ss_pred EEEeCCeEEEEeeCCCCCCCceeEeEEeec-ceeeecccCCCceEEEccC---ccEEEeccCCCCCCcceEEEeeccc
Q psy5694 30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQD-DVNIYLNTDTGGKYVVLSS---GDLYVFNATPNDGYKSYRCRTVNKI 103 (129)
Q Consensus 30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d-~~~i~~~~~~~~ry~vlps---G~L~I~nv~~~D~g~~Y~C~a~N~l 103 (129)
.+..|+++.|.|.+.+.+ .+.+.|.++ +..+. .+.++..... +.|.|.+++.+|+| .|+|.+.+..
T Consensus 5 ~~~~g~~~~l~C~~~~~~---~~~~~W~~~~~~~v~----~~~~~~~~~~~~~~~l~i~~~~~~d~G-~Y~C~v~~~~ 74 (86)
T smart00410 5 TVKEGESVTLSCEVSGSP---PPEVTWYKQGGKLLA----ESGRFSVSRSGSNSTLTISNVTPEDSG-TYTCAATNSS 74 (86)
T ss_pred EEeCCCeEEEEEEEccCC---CCeEEEEECCCEEcC----CCCcEEEEEcCCeeEEEEEeeccccCe-EEEEEEEcCC
Confidence 788999999999998763 467899998 66653 2467766654 68999999999997 9999999876
No 103
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=99.00 E-value=1.4e-09 Score=72.74 Aligned_cols=81 Identities=17% Similarity=0.256 Sum_probs=52.2
Q ss_pred CCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEcc---CccEEEeccCCCCCCcceEEEeecccCCeEEec
Q psy5694 34 GNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLS---SGDLYVFNATPNDGYKSYRCRTVNKITGESQAS 110 (129)
Q Consensus 34 GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlp---sG~L~I~nv~~~D~g~~Y~C~a~N~ltge~k~S 110 (129)
|++++|+|.+.+.+ .+.+.|.+++..+........+..+.. +..|.|.+++.+|.| .|.|.|.|...++. .+
T Consensus 1 Ge~~~l~C~~~~~~---~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG-~Y~C~a~n~~~~~~-~~ 75 (84)
T cd05861 1 GETITVNCIVQGNE---VVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSG-TYECAAHESTQDQK-AF 75 (84)
T ss_pred CCcEEEEEEEECCC---ccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCE-EEEEEEEECccCcc-ee
Confidence 78999999997755 367899876532110000011222221 357999999999997 99999999875442 23
Q ss_pred ccceEEEEec
Q psy5694 111 VFQTRLSITG 120 (129)
Q Consensus 111 ~~~~~L~V~e 120 (129)
. ...|+|.|
T Consensus 76 ~-sv~i~V~~ 84 (84)
T cd05861 76 K-KVNITVHE 84 (84)
T ss_pred E-EEEEEEeC
Confidence 3 44666653
No 104
>KOG4194|consensus
Probab=98.98 E-value=1.6e-09 Score=96.45 Aligned_cols=93 Identities=16% Similarity=0.254 Sum_probs=76.4
Q ss_pred eeeeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEcc-CccEEEeccCCCCCCcceEE
Q psy5694 19 QKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLS-SGDLYVFNATPNDGYKSYRC 97 (129)
Q Consensus 19 q~y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlp-sG~L~I~nv~~~D~g~~Y~C 97 (129)
..|.--|+|- ....|.+|.|.|.+.+.|+ |.++|.||+..=+|. ....|.+|+| +...+|.||..+|+| .|+|
T Consensus 613 PsFtktP~dl-tl~tg~mArl~CaAtG~P~---PeIawqkdggtdFPA-A~eRRl~Vmpedd~f~Itnvk~eD~G-iYtC 686 (873)
T KOG4194|consen 613 PSFTKTPEDL-TLRTGQMARLECAATGHPR---PEIAWQKDGGTDFPA-ARERRLHVMPEDDVFFITNVKIEDQG-IYTC 686 (873)
T ss_pred CccccCcccc-eeecccceeeeeeccCCCC---cceeehhcCCCCCch-hhhheeeecCCCCEEEEecccccccc-eeEE
Confidence 4577778888 9999999999999999885 789999998443332 3568899998 455999999999998 9999
Q ss_pred EeecccCCeEEecccceEEEEecC
Q psy5694 98 RTVNKITGESQASVFQTRLSITGK 121 (129)
Q Consensus 98 ~a~N~ltge~k~S~~~~~L~V~ep 121 (129)
.|.|.. |+.++++ .|+|.|-
T Consensus 687 ~A~n~A-G~isanA---tL~V~e~ 706 (873)
T KOG4194|consen 687 TAQNVA-GQISANA---TLTVLET 706 (873)
T ss_pred eeeccc-cceeece---EEEEecC
Confidence 999988 7765554 8888875
No 105
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=98.97 E-value=3.7e-09 Score=75.65 Aligned_cols=81 Identities=16% Similarity=0.160 Sum_probs=54.6
Q ss_pred EeeeeeeEEEeCCeEEEEeeCCCCCCC-ceeEeEEeecc---e---ee-ecc---------cCCCceEEE-----ccCcc
Q psy5694 23 INVNYEHNVILGNTAVLRCQIPSYMSE-YIIVTSWIQDD---V---NI-YLN---------TDTGGKYVV-----LSSGD 80 (129)
Q Consensus 23 ~~v~~~~~V~~GntAvL~C~vp~~~~~-~v~v~sW~~d~---~---~i-~~~---------~~~~~ry~v-----lpsG~ 80 (129)
+.+..++.+..|.+|.|.|.+.+..+. ....+.|.... . .| ... ..-.+|... ..++.
T Consensus 2 v~~~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daS 81 (116)
T cd05879 2 VYTDREVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGS 81 (116)
T ss_pred eEccceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeE
Confidence 445556689999999999999664321 24679994321 0 11 110 111246654 24566
Q ss_pred EEEeccCCCCCCcceEEEeecccC
Q psy5694 81 LYVFNATPNDGYKSYRCRTVNKIT 104 (129)
Q Consensus 81 L~I~nv~~~D~g~~Y~C~a~N~lt 104 (129)
|.|+|++.+|.| .|.|.+.|...
T Consensus 82 I~I~nv~~sD~G-~Y~C~v~n~p~ 104 (116)
T cd05879 82 IVIHNLDYTDNG-TFTCDVKNPPD 104 (116)
T ss_pred EEEccCCcccCE-EEEEEEEcCCC
Confidence 999999999997 99999999864
No 106
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=98.95 E-value=9.1e-09 Score=81.26 Aligned_cols=73 Identities=15% Similarity=0.201 Sum_probs=56.4
Q ss_pred EEEeCCeEEEEeeCCCCCC--CceeEeEEeecceeeecccCCCceEEEccC-ccEEEeccCCCCCCcceEEEeecccCCe
Q psy5694 30 NVILGNTAVLRCQIPSYMS--EYIIVTSWIQDDVNIYLNTDTGGKYVVLSS-GDLYVFNATPNDGYKSYRCRTVNKITGE 106 (129)
Q Consensus 30 ~V~~GntAvL~C~vp~~~~--~~v~v~sW~~d~~~i~~~~~~~~ry~vlps-G~L~I~nv~~~D~g~~Y~C~a~N~ltge 106 (129)
.+..|.++.|.|.+.+.++ ...+.++|.+|+..|.+ ++|+.+..+ +.|.|.||+.+|+| .|+|.|.....|.
T Consensus 140 ~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~----~~r~~~~~~~~~L~I~~V~~~DsG-~YtC~a~~~~~g~ 214 (227)
T PHA02826 140 QFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLY----TDRIQLRNNNSTLVIKSATHDDSG-IYTCNLRFNKNSN 214 (227)
T ss_pred eEecCCCEEEEeeCCCCccccCCCceEEEEECCEECCC----CCCEEEeCCCCEEEECcCCHHhCE-EEEEEEEEeECCE
Confidence 6678999999999864321 01367999999988743 457776654 57999999999998 9999999876555
Q ss_pred E
Q psy5694 107 S 107 (129)
Q Consensus 107 ~ 107 (129)
.
T Consensus 215 ~ 215 (227)
T PHA02826 215 N 215 (227)
T ss_pred E
Confidence 3
No 107
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=98.93 E-value=7.1e-09 Score=68.88 Aligned_cols=68 Identities=18% Similarity=0.287 Sum_probs=51.7
Q ss_pred CCeEEEEeeCCCCCCCceeEeEEeeccee-----eec---------ccCCCceEEEccCccEEEeccCCCCCCcceEEEe
Q psy5694 34 GNTAVLRCQIPSYMSEYIIVTSWIQDDVN-----IYL---------NTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRT 99 (129)
Q Consensus 34 GntAvL~C~vp~~~~~~v~v~sW~~d~~~-----i~~---------~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a 99 (129)
|.+|+|+|.++... ...+.|.+.+.. +.. ...-.+|+.+.++|.|.|+|++.+|+| .|+|..
T Consensus 1 G~~VtL~c~~~~~~---~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~l~~~DsG-~Y~c~v 76 (92)
T cd05741 1 GESVTLPVSNLPEN---LQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPNGSLLIQNLTKEDSG-TYTLQI 76 (92)
T ss_pred CCcEEEEcccCCCC---CEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCCceEEEccCCchhcE-EEEEEE
Confidence 88999999987522 457899886521 110 012257888999999999999999997 999999
Q ss_pred ecccCCe
Q psy5694 100 VNKITGE 106 (129)
Q Consensus 100 ~N~ltge 106 (129)
.+.. |+
T Consensus 77 ~~~~-~~ 82 (92)
T cd05741 77 ISTN-GV 82 (92)
T ss_pred EcCC-Cc
Confidence 9876 44
No 108
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=98.91 E-value=6.6e-09 Score=66.07 Aligned_cols=75 Identities=21% Similarity=0.434 Sum_probs=54.7
Q ss_pred eeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecccC
Q psy5694 25 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKIT 104 (129)
Q Consensus 25 v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~lt 104 (129)
++.. .+..|..+.|.|.+++.+. ..+.|.+++..|... .+.|+|.+++.+|.| .|+|.+.|.-+
T Consensus 6 ~~~~-~v~~g~~~~l~C~~~~~p~---~~~~w~~~~~~~~~~-----------~~~~~~~~~~~~~~g-~y~C~~~~~~~ 69 (80)
T PF13895_consen 6 SSPQ-SVEEGDSVTLTCSVSGNPP---PQVQWYKNGSPINSS-----------QNGLFIPNVSPEDSG-NYTCRASNGSG 69 (80)
T ss_dssp EESS-EEETTSEEEEEEEEESSSS---SEEEEEETTEEEEEE-----------SSEEEESSEEGGGTE-EEEEEEEETTE
T ss_pred ccce-EEeCCCcEEEEEEEEcccc---eeeeeeeeeeeeeee-----------eeeeeeeeeccccCE-EEEEEEEeCCC
Confidence 3345 7899999999999986554 468999988666421 112889999999997 99999999653
Q ss_pred CeEEecccceEEEE
Q psy5694 105 GESQASVFQTRLSI 118 (129)
Q Consensus 105 ge~k~S~~~~~L~V 118 (129)
...|. ...|.|
T Consensus 70 --~~~s~-~~~v~V 80 (80)
T PF13895_consen 70 --SNTST-SVNVTV 80 (80)
T ss_dssp --EEEEE-EEEEEE
T ss_pred --CeEee-eEEeeC
Confidence 24454 445554
No 109
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.90 E-value=4.4e-09 Score=72.82 Aligned_cols=73 Identities=22% Similarity=0.273 Sum_probs=51.4
Q ss_pred eEEEeCCeEEEEeeCCCCCCCceeEeEEeecc-eeee---------cccCCCceEEEc----cCcc--EEEeccCCCCCC
Q psy5694 29 HNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-VNIY---------LNTDTGGKYVVL----SSGD--LYVFNATPNDGY 92 (129)
Q Consensus 29 ~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-~~i~---------~~~~~~~ry~vl----psG~--L~I~nv~~~D~g 92 (129)
|.+..|++|.|+|...+.+ .+.++|.+++ ..+. ......+|+.+. .+|+ |.|+|++.+|.|
T Consensus 2 v~~~~G~~VtL~C~~s~~~---~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsg 78 (94)
T cd07690 2 VLGKKGDTAELPCTASQKK---SIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSD 78 (94)
T ss_pred eEeeCCCCEEEEEEeCCCC---CcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCE
Confidence 3678999999999998655 4678998766 3211 001112333332 3454 999999999997
Q ss_pred cceEEEeecccCCe
Q psy5694 93 KSYRCRTVNKITGE 106 (129)
Q Consensus 93 ~~Y~C~a~N~ltge 106 (129)
.|.|.+.|+. +|
T Consensus 79 -tY~C~v~~~~-~~ 90 (94)
T cd07690 79 -TYICEVEDKK-EE 90 (94)
T ss_pred -EEEEEECCcc-ce
Confidence 9999999987 55
No 110
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=98.89 E-value=2.6e-09 Score=72.37 Aligned_cols=79 Identities=20% Similarity=0.234 Sum_probs=56.8
Q ss_pred EEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEE-EccCccEEEeccCCCCCCcceEEEeecccCCeEE
Q psy5694 30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYV-VLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQ 108 (129)
Q Consensus 30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~-vlpsG~L~I~nv~~~D~g~~Y~C~a~N~ltge~k 108 (129)
.|..|++++|+|+.+... ....|++|+..... .+-. --..++|.|.+|+.+|+| .|+|++.|...+...
T Consensus 12 vV~~G~~VtL~C~~~~~~----~~f~l~k~g~~~~~-----~~~~~~~~~~~f~i~~v~~~~~G-~Y~C~~~~~~~~~S~ 81 (91)
T cd05751 12 VVPLGKPVTLRCQGPYGA----VEYRLYREGSTFAV-----KKPPEPQNKAKFFIPSMKREHAG-RYRCYYRSGVALWSE 81 (91)
T ss_pred ccCCCCcEEEEEecCCCC----CEEEEEECCCCccc-----cccCCCceeEEEEccCCChhHCE-EEEEEEECCCCccCC
Confidence 578999999999986333 34689998743311 0000 012578999999999998 999999997545555
Q ss_pred ecccceEEEEe
Q psy5694 109 ASVFQTRLSIT 119 (129)
Q Consensus 109 ~S~~~~~L~V~ 119 (129)
.|+ +..|.|+
T Consensus 82 ~Sd-~lel~Vt 91 (91)
T cd05751 82 PSD-PLELVVT 91 (91)
T ss_pred CCC-cEEEEeC
Confidence 666 7888875
No 111
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=98.85 E-value=2.7e-09 Score=66.50 Aligned_cols=58 Identities=21% Similarity=0.401 Sum_probs=40.6
Q ss_pred CCeEEEEeeC-CCCCCCceeEeEEeecceeeecccCCCceEEEccCcc-----EEEeccCCCCCCcceEEEe
Q psy5694 34 GNTAVLRCQI-PSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGD-----LYVFNATPNDGYKSYRCRT 99 (129)
Q Consensus 34 GntAvL~C~v-p~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~-----L~I~nv~~~D~g~~Y~C~a 99 (129)
|++|.|.|.+ ...+ ...++|.+++..+.. ........++. |.|.+++++|+| .|.|.|
T Consensus 1 G~~v~L~C~~~~~~~---~~~~~W~~~~~~~~~----~~~~~~~~~~~~~~~~L~i~~v~~~d~G-~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPP---PTTVTWSKNGQSLPE----GSTTNRSTNSVSSTSRLTISNVTPEDSG-TYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSS---TSEEEEEETTTTTSE----EEEEEEEETTTEEEEEEEESSCTGGGTE-EEEEEE
T ss_pred CCeEEEEeecCCCCC---CcEEEEEECCccccC----cceeEeecccceeeeEEEEccCCHHHCE-EEEEEC
Confidence 8999999999 2222 356899999843311 12333333333 999999999997 999986
No 112
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=98.81 E-value=2e-08 Score=79.37 Aligned_cols=87 Identities=17% Similarity=0.161 Sum_probs=57.7
Q ss_pred eEEEeCCeEEEEeeCCCCCC--------CceeEeEEeecceee-ec-ccCC-------CceEEEccCccEEEeccCCCCC
Q psy5694 29 HNVILGNTAVLRCQIPSYMS--------EYIIVTSWIQDDVNI-YL-NTDT-------GGKYVVLSSGDLYVFNATPNDG 91 (129)
Q Consensus 29 ~~V~~GntAvL~C~vp~~~~--------~~v~v~sW~~d~~~i-~~-~~~~-------~~ry~vlpsG~L~I~nv~~~D~ 91 (129)
+.|.+|++|+|+|.+..+++ .....+.|.|++... .. ..+. ..++ -..+|.|.|.+++.+|+
T Consensus 32 ~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~-~~r~~~L~I~~v~~~Ds 110 (227)
T PHA02826 32 VYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEI-GDRSENLWIGNVINIDE 110 (227)
T ss_pred EEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccce-ecCCCeEEECCCChHHC
Confidence 38999999999999755432 112468999987332 11 0000 1122 12468999999999999
Q ss_pred CcceEEEeecccCCeEEecccceEEEEecC
Q psy5694 92 YKSYRCRTVNKITGESQASVFQTRLSITGK 121 (129)
Q Consensus 92 g~~Y~C~a~N~ltge~k~S~~~~~L~V~ep 121 (129)
| .|.|+|.|.. |.... ...|.|.++
T Consensus 111 G-~Y~C~a~N~~-~~~~~---~i~L~V~~~ 135 (227)
T PHA02826 111 G-IYICTISSGN-ICEES---TIRLTFDSG 135 (227)
T ss_pred E-EEEEEEEECC-cceEE---EEEEEEecC
Confidence 8 9999999976 44222 346777654
No 113
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.81 E-value=2.1e-08 Score=69.74 Aligned_cols=74 Identities=19% Similarity=0.328 Sum_probs=54.7
Q ss_pred EEEeCCeEEEEeeC-CCC-CCCceeEeEEeecceeeecccCCCceEEEc-cCccEEEeccCCCCCCcceEEEeecccCCe
Q psy5694 30 NVILGNTAVLRCQI-PSY-MSEYIIVTSWIQDDVNIYLNTDTGGKYVVL-SSGDLYVFNATPNDGYKSYRCRTVNKITGE 106 (129)
Q Consensus 30 ~V~~GntAvL~C~v-p~~-~~~~v~v~sW~~d~~~i~~~~~~~~ry~vl-psG~L~I~nv~~~D~g~~Y~C~a~N~ltge 106 (129)
.+..|....|.|.= -.+ .+...+.+.|.||+.+|.. ...++... .++.|.|.+|+.+|+| .|+|.+.|..+|.
T Consensus 6 ~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~---~~~~~~~~~~~~~L~I~~v~~~D~G-~YtC~~~~~~~g~ 81 (95)
T cd05897 6 ILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDK---DNEKFYSLKGSTYLHIIDVSLNDSG-YYTCKLQFTHEGK 81 (95)
T ss_pred EeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcC---CCcceEecCCCCEEEEEEcChhhCE-EEEEEEEEeeCCE
Confidence 45779999999962 122 1222357999999977742 34566664 3568999999999998 9999999998666
Q ss_pred E
Q psy5694 107 S 107 (129)
Q Consensus 107 ~ 107 (129)
.
T Consensus 82 ~ 82 (95)
T cd05897 82 K 82 (95)
T ss_pred E
Confidence 4
No 114
>PHA02785 IL-beta-binding protein; Provisional
Probab=98.80 E-value=2.8e-08 Score=81.64 Aligned_cols=88 Identities=13% Similarity=0.133 Sum_probs=61.7
Q ss_pred eeeeeEEEeCCeEEEEeeCC-CCC-CCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecc
Q psy5694 25 VNYEHNVILGNTAVLRCQIP-SYM-SEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNK 102 (129)
Q Consensus 25 v~~~~~V~~GntAvL~C~vp-~~~-~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~ 102 (129)
.... .+.+|..+.|.|... .+. .+..+.+.|.++. .+ .++|+.++++|.|.|.||+.+|+| .|+|.|.|.
T Consensus 128 ~~~~-~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~-~~-----~~~r~~~~~~~~L~i~~v~~~d~G-~Y~C~~~n~ 199 (326)
T PHA02785 128 SYPQ-IVNERSTGEMVCPNINAFIASNVNADIIWSGHR-RL-----RNKRLKQRTPGIITIEDVRKNDAG-YYTCVLKYI 199 (326)
T ss_pred eccc-eecccCcEEEECCChhhcccCCCCceEEEccCC-cc-----CCcceEecCCCeEEEeecChhhCe-EEEEEEEec
Confidence 3344 567999999999732 110 1223679998865 22 357899999999999999999997 999999999
Q ss_pred cCCeEEecccceEEEEec
Q psy5694 103 ITGESQASVFQTRLSITG 120 (129)
Q Consensus 103 ltge~k~S~~~~~L~V~e 120 (129)
.++....-.....|.|.+
T Consensus 200 ~g~~~~~~t~~v~l~V~~ 217 (326)
T PHA02785 200 YGDKTYNVTRIVKLEVRD 217 (326)
T ss_pred cCCEEEeEEEEEEEEEec
Confidence 866532211134566653
No 115
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=98.79 E-value=2.1e-08 Score=67.44 Aligned_cols=81 Identities=17% Similarity=0.144 Sum_probs=51.8
Q ss_pred CCeEEEEeeCCCCCCCceeEeEEeecceee-ecccCCCceEEE----ccCccEEEeccCCCCCCcceEEEeecccCCeEE
Q psy5694 34 GNTAVLRCQIPSYMSEYIIVTSWIQDDVNI-YLNTDTGGKYVV----LSSGDLYVFNATPNDGYKSYRCRTVNKITGESQ 108 (129)
Q Consensus 34 GntAvL~C~vp~~~~~~v~v~sW~~d~~~i-~~~~~~~~ry~v----lpsG~L~I~nv~~~D~g~~Y~C~a~N~ltge~k 108 (129)
|.++.|.|.+.+.+.. ...+.|...+..+ ........|... .-++.|.|.+++.+|.| .|.|.|.|.. |..
T Consensus 1 Ge~~~L~C~~~~~~~~-~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG-~Y~C~a~n~~-~~~- 76 (86)
T cd05862 1 GEKLVLNCTARTELNV-GIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLG-RYTCTASSGQ-MIA- 76 (86)
T ss_pred CCcEEEEEEEEeCCCC-cEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCE-EEEEEEeecc-eEe-
Confidence 7899999999643321 3457998766322 100001111111 13578999999999998 9999999975 442
Q ss_pred ecccceEEEEec
Q psy5694 109 ASVFQTRLSITG 120 (129)
Q Consensus 109 ~S~~~~~L~V~e 120 (129)
+. .+.|.|.|
T Consensus 77 -~~-~t~~~V~~ 86 (86)
T cd05862 77 -KN-STIVIVHE 86 (86)
T ss_pred -cc-cEEEEEeC
Confidence 33 55888865
No 116
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=98.79 E-value=4.4e-08 Score=66.46 Aligned_cols=69 Identities=23% Similarity=0.387 Sum_probs=46.9
Q ss_pred CCeEEEEeeCCCCCCCceeEeEEeecc--eee--eccc---------CCCceEEEcc------CccEEEeccCCCCCCcc
Q psy5694 34 GNTAVLRCQIPSYMSEYIIVTSWIQDD--VNI--YLNT---------DTGGKYVVLS------SGDLYVFNATPNDGYKS 94 (129)
Q Consensus 34 GntAvL~C~vp~~~~~~v~v~sW~~d~--~~i--~~~~---------~~~~ry~vlp------sG~L~I~nv~~~D~g~~ 94 (129)
|++|.|+|.+.+........+.|++.+ ..+ +... +-.+|+.+.. +..|.|.|++.+|+| .
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G-~ 79 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEG-L 79 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCE-E
Confidence 789999999864433334468998865 222 1110 1125776532 246999999999997 9
Q ss_pred eEEEeeccc
Q psy5694 95 YRCRTVNKI 103 (129)
Q Consensus 95 Y~C~a~N~l 103 (129)
|+|.+.|.-
T Consensus 80 Y~C~v~~~~ 88 (100)
T cd05713 80 YTCFFQSDG 88 (100)
T ss_pred EEEEEecCC
Confidence 999999864
No 117
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.76 E-value=4.2e-08 Score=67.18 Aligned_cols=85 Identities=20% Similarity=0.283 Sum_probs=57.4
Q ss_pred EEEeCCeEEEEeeCCCCCCCceeEeEEeecce------eeeccc----CCCceEEEcc-----CccEEEeccCCCCCCcc
Q psy5694 30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDV------NIYLNT----DTGGKYVVLS-----SGDLYVFNATPNDGYKS 94 (129)
Q Consensus 30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~------~i~~~~----~~~~ry~vlp-----sG~L~I~nv~~~D~g~~ 94 (129)
.|.+|.+|.|.|.+.... ...+.|.+... .+.... ...+||.+.. +-.|.|+|++.+|.| .
T Consensus 9 ~~~~G~~v~L~C~~~~~~---~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG-~ 84 (109)
T cd04983 9 SVQEGENVTLNCNYSTST---FYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDSA-V 84 (109)
T ss_pred EEcCCCCEEEEEEECCCC---ccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHCE-E
Confidence 889999999999988652 34679987531 121110 2357887753 236999999999997 9
Q ss_pred eEEEeecccCCeEEecccceEEEE
Q psy5694 95 YRCRTVNKITGESQASVFQTRLSI 118 (129)
Q Consensus 95 Y~C~a~N~ltge~k~S~~~~~L~V 118 (129)
|.|.+.+.-.+.........+|.|
T Consensus 85 Y~C~~~~~~~~~~~~~g~gt~l~V 108 (109)
T cd04983 85 YFCALSESGGTGKLTFGKGTRLTV 108 (109)
T ss_pred EEEEEecCCCCcceEECCCEEEEE
Confidence 999999764223233333556666
No 118
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=98.75 E-value=6.6e-08 Score=66.31 Aligned_cols=72 Identities=24% Similarity=0.278 Sum_probs=52.6
Q ss_pred EeCCeEEEEeeCCCCCCCceeEeEEeecc-eee-ecc----c-------CCCceEEEcc-CccEEEeccCCCCCCcceEE
Q psy5694 32 ILGNTAVLRCQIPSYMSEYIIVTSWIQDD-VNI-YLN----T-------DTGGKYVVLS-SGDLYVFNATPNDGYKSYRC 97 (129)
Q Consensus 32 ~~GntAvL~C~vp~~~~~~v~v~sW~~d~-~~i-~~~----~-------~~~~ry~vlp-sG~L~I~nv~~~D~g~~Y~C 97 (129)
+.|+++.|+|.++. ......+.|.+.. ..+ ... . .-.+|+.+.+ ++.|.|+|++.+|+| .|.|
T Consensus 2 ~~G~sVtL~c~~~~--~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG-~Y~c 78 (97)
T cd05775 2 ILGGSVTLPLNIPD--GTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAG-SYRA 78 (97)
T ss_pred ccCCeEEEeCCCCC--CcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCE-EEEE
Confidence 46999999999874 1335789999865 222 110 0 1125777766 599999999999998 9999
Q ss_pred EeecccCCeE
Q psy5694 98 RTVNKITGES 107 (129)
Q Consensus 98 ~a~N~ltge~ 107 (129)
...+.. |+.
T Consensus 79 ~v~~~~-~~~ 87 (97)
T cd05775 79 EINTKN-GVT 87 (97)
T ss_pred EEEcCC-CCe
Confidence 999876 553
No 119
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.73 E-value=6.6e-08 Score=66.34 Aligned_cols=82 Identities=17% Similarity=0.290 Sum_probs=53.4
Q ss_pred eCCeEEEEeeCCCCC---CCceeEeEEeecc-e-----e-eecc-------cCCCceEEEcc----CccEEEeccCCCCC
Q psy5694 33 LGNTAVLRCQIPSYM---SEYIIVTSWIQDD-V-----N-IYLN-------TDTGGKYVVLS----SGDLYVFNATPNDG 91 (129)
Q Consensus 33 ~GntAvL~C~vp~~~---~~~v~v~sW~~d~-~-----~-i~~~-------~~~~~ry~vlp----sG~L~I~nv~~~D~ 91 (129)
+|++|.|+|.++..+ ......+.|.+.+ . . +... .+-.+|+.+.. +..|.|.|++.+|+
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds 80 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY 80 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence 599999999986543 1234568999864 1 1 1110 11246877743 34799999999999
Q ss_pred CcceEEEeecccCCeEEecccceEEEEe
Q psy5694 92 YKSYRCRTVNKITGESQASVFQTRLSIT 119 (129)
Q Consensus 92 g~~Y~C~a~N~ltge~k~S~~~~~L~V~ 119 (129)
| .|+|.+.|.. |. .+. ...|.|+
T Consensus 81 G-~Y~C~v~~~~-~~--~~~-~~~l~v~ 103 (106)
T cd05877 81 G-RYRCEVIDGL-ED--ESV-VVALRLR 103 (106)
T ss_pred E-EEEEEEEecc-cc--eEE-EEEEEEE
Confidence 7 9999999865 22 233 3355554
No 120
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=98.72 E-value=1e-07 Score=66.27 Aligned_cols=70 Identities=17% Similarity=0.379 Sum_probs=52.5
Q ss_pred EEEeCCeEEEEeeCCCCCCCceeEeEEeecc-eeeecc---cCCCceEEEcc-Ccc---EEEeccCCCCCCcceEEEeec
Q psy5694 30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-VNIYLN---TDTGGKYVVLS-SGD---LYVFNATPNDGYKSYRCRTVN 101 (129)
Q Consensus 30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-~~i~~~---~~~~~ry~vlp-sG~---L~I~nv~~~D~g~~Y~C~a~N 101 (129)
.|.+|++|.|.|.+..... ..++|++-+ ..|.-. ...+.||.+.. +|+ |.|++++.+|+| .|.|++..
T Consensus 8 tv~~G~ta~L~C~v~~~~~---~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G-~Y~Cqv~t 83 (95)
T cd05881 8 TVVEGEVAIISCRVKNNDD---SVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEG-RYFCQLYT 83 (95)
T ss_pred EEcCCCcEEEEEEEccCCc---cEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCE-EEEEEEEc
Confidence 8899999999999987653 347898765 333111 11467888765 454 999999999997 99999986
Q ss_pred cc
Q psy5694 102 KI 103 (129)
Q Consensus 102 ~l 103 (129)
..
T Consensus 84 ~p 85 (95)
T cd05881 84 DP 85 (95)
T ss_pred cc
Confidence 43
No 121
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.72 E-value=4.2e-08 Score=66.32 Aligned_cols=71 Identities=17% Similarity=0.287 Sum_probs=50.9
Q ss_pred EEEeCCeEEEEeeCCCCCCCceeEeEEeecc-----eeeec--------ccCCCceEEEccCc-----cEEEeccCCCCC
Q psy5694 30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNIYL--------NTDTGGKYVVLSSG-----DLYVFNATPNDG 91 (129)
Q Consensus 30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-----~~i~~--------~~~~~~ry~vlpsG-----~L~I~nv~~~D~ 91 (129)
.|.+|++|.|.|.+....+ ...+.|.+.. ..|.. .....+|+.+..++ .|.|+|++.+|+
T Consensus 2 ~v~~G~~v~L~C~~~~~~~--~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~ 79 (105)
T cd00099 2 SVSEGESVTLSCTYSGSFS--SYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDS 79 (105)
T ss_pred eecCCCCEEEEEEEeCCcC--cceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHC
Confidence 6789999999999976522 3568998843 12211 01234688775433 699999999999
Q ss_pred CcceEEEeeccc
Q psy5694 92 YKSYRCRTVNKI 103 (129)
Q Consensus 92 g~~Y~C~a~N~l 103 (129)
| .|.|.+.+..
T Consensus 80 G-~Y~C~v~~~~ 90 (105)
T cd00099 80 A-VYYCAVSLSG 90 (105)
T ss_pred E-EEEEEEecCC
Confidence 7 9999999864
No 122
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.71 E-value=1.3e-07 Score=63.60 Aligned_cols=71 Identities=20% Similarity=0.344 Sum_probs=47.5
Q ss_pred CeEEEEeeCCCCCCCceeEeEEeecce----ee--e-cc------cCCCceEEEc----cCccEEEeccCCCCCCcceEE
Q psy5694 35 NTAVLRCQIPSYMSEYIIVTSWIQDDV----NI--Y-LN------TDTGGKYVVL----SSGDLYVFNATPNDGYKSYRC 97 (129)
Q Consensus 35 ntAvL~C~vp~~~~~~v~v~sW~~d~~----~i--~-~~------~~~~~ry~vl----psG~L~I~nv~~~D~g~~Y~C 97 (129)
.+|.|+|.++...+.....+.|.|.+. .| . +. ..-.+|.... .++.|.|+||+.+|+| .|.|
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G-~Y~C 79 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEG-NYIC 79 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCE-EEEE
Confidence 368999998765433356799999652 11 1 10 0113455444 2578999999999997 9999
Q ss_pred EeecccCCe
Q psy5694 98 RTVNKITGE 106 (129)
Q Consensus 98 ~a~N~ltge 106 (129)
.+.+...|.
T Consensus 80 ~v~~~~~g~ 88 (98)
T cd05718 80 EFATFPQGN 88 (98)
T ss_pred EEEeCCCCc
Confidence 998644354
No 123
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=98.67 E-value=1.2e-07 Score=65.10 Aligned_cols=83 Identities=17% Similarity=0.316 Sum_probs=52.9
Q ss_pred eCCeEEEEeeCCCCCC---CceeEeEEeecc------eeeec-cc-------CCCceEEEc----cCccEEEeccCCCCC
Q psy5694 33 LGNTAVLRCQIPSYMS---EYIIVTSWIQDD------VNIYL-NT-------DTGGKYVVL----SSGDLYVFNATPNDG 91 (129)
Q Consensus 33 ~GntAvL~C~vp~~~~---~~v~v~sW~~d~------~~i~~-~~-------~~~~ry~vl----psG~L~I~nv~~~D~ 91 (129)
+|+.|+|+|.++..+. .....+.|.+.. ..+.. .. .-.+|.... .+..|.|+|++.+|+
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~ 80 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS 80 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence 5999999999875531 224578998861 22211 10 011233321 356699999999999
Q ss_pred CcceEEEeecccCCeEEecccceEEEEec
Q psy5694 92 YKSYRCRTVNKITGESQASVFQTRLSITG 120 (129)
Q Consensus 92 g~~Y~C~a~N~ltge~k~S~~~~~L~V~e 120 (129)
| .|+|.+.|.. +. .+. ..+|.|+.
T Consensus 81 G-~Y~C~v~~~~-~~--~~~-~v~L~V~~ 104 (106)
T cd05714 81 G-RYRCEVIDGI-ED--EQD-TVELEVRG 104 (106)
T ss_pred E-EEEEEEEcCC-Cc--eEE-EEEEEEEE
Confidence 7 9999999864 32 244 55777753
No 124
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=98.62 E-value=2.6e-07 Score=62.01 Aligned_cols=87 Identities=21% Similarity=0.351 Sum_probs=58.5
Q ss_pred eeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecce-----eee-c---------ccCCCceEEEccCcc-----EEEec
Q psy5694 26 NYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDV-----NIY-L---------NTDTGGKYVVLSSGD-----LYVFN 85 (129)
Q Consensus 26 ~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~-----~i~-~---------~~~~~~ry~vlpsG~-----L~I~n 85 (129)
...+.+.+|++|.|.|... . .+....+.|.+.+. .|. . ...-.+|+.+..++. |.|.|
T Consensus 8 ~~~v~~~~G~~v~L~C~~~-~-~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~ 85 (114)
T PF07686_consen 8 PSPVTVQEGESVTLPCSYS-S-SSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKN 85 (114)
T ss_dssp ESEEEEETTSEEEEEEEEE-S-SSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESS
T ss_pred CCeEEEecCCCEEEEEEEe-C-CCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECC
Confidence 3344899999999999998 2 23356789988432 222 0 012245777766555 99999
Q ss_pred cCCCCCCcceEEEeecccCCeEEecccceEEEE
Q psy5694 86 ATPNDGYKSYRCRTVNKITGESQASVFQTRLSI 118 (129)
Q Consensus 86 v~~~D~g~~Y~C~a~N~ltge~k~S~~~~~L~V 118 (129)
++.+|+| .|.|..... ++..... ..+|+|
T Consensus 86 l~~~DsG-~Y~C~v~~~--~~~~~~~-~~~L~V 114 (114)
T PF07686_consen 86 LQPSDSG-TYFCQVSTS--NEQSFGN-GTKLTV 114 (114)
T ss_dssp ESGGGEE-EEEEEEEES--SEEEEEE-EEEEEE
T ss_pred CCcCcCE-EEEEEEEEC--CCCEECC-cEEEEC
Confidence 9999997 999999987 3333333 445554
No 125
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=98.62 E-value=1.8e-07 Score=66.12 Aligned_cols=80 Identities=20% Similarity=0.421 Sum_probs=51.1
Q ss_pred EeeeeeeEEEeCCeEEEEeeCCCCCC-CceeEeEEee---c-c--eee-ecc----cCCC----ceEEEc-----cCccE
Q psy5694 23 INVNYEHNVILGNTAVLRCQIPSYMS-EYIIVTSWIQ---D-D--VNI-YLN----TDTG----GKYVVL-----SSGDL 81 (129)
Q Consensus 23 ~~v~~~~~V~~GntAvL~C~vp~~~~-~~v~v~sW~~---d-~--~~i-~~~----~~~~----~ry~vl-----psG~L 81 (129)
+.+..++.|.+|.+|.|.|.+....+ .....+.|.+ + + ..+ .-. ...+ +|+... .+..|
T Consensus 2 ~~~~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL 81 (115)
T cd05880 2 VYTSKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASI 81 (115)
T ss_pred eecCceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEE
Confidence 34555568999999999999854332 1124589953 1 1 122 111 1122 343322 24559
Q ss_pred EEeccCCCCCCcceEEEeeccc
Q psy5694 82 YVFNATPNDGYKSYRCRTVNKI 103 (129)
Q Consensus 82 ~I~nv~~~D~g~~Y~C~a~N~l 103 (129)
.|++++.+|+| .|.|.+.|.-
T Consensus 82 ~I~~v~~~D~G-~Y~C~v~~~~ 102 (115)
T cd05880 82 LIWQLQPTDNG-TYTCQVKNPP 102 (115)
T ss_pred EEeeCChhhCE-EEEEEEEeCC
Confidence 99999999997 9999999874
No 126
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=98.57 E-value=4.7e-07 Score=63.52 Aligned_cols=79 Identities=19% Similarity=0.289 Sum_probs=50.3
Q ss_pred eeeeeeEEEeCCeEEEEeeCCCCCC-CceeEeEEeecc------eee--ecccC----CCc----eEEEcc-----CccE
Q psy5694 24 NVNYEHNVILGNTAVLRCQIPSYMS-EYIIVTSWIQDD------VNI--YLNTD----TGG----KYVVLS-----SGDL 81 (129)
Q Consensus 24 ~v~~~~~V~~GntAvL~C~vp~~~~-~~v~v~sW~~d~------~~i--~~~~~----~~~----ry~vlp-----sG~L 81 (129)
.+...+.|.+|.+|.|.|.+....+ .....+.|.+.. ..+ +.... ..+ |+.... +..|
T Consensus 3 ~~p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL 82 (116)
T cd05715 3 YTPREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASI 82 (116)
T ss_pred ecCCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEE
Confidence 3444458999999999999864321 123468997532 112 11100 123 333321 2459
Q ss_pred EEeccCCCCCCcceEEEeeccc
Q psy5694 82 YVFNATPNDGYKSYRCRTVNKI 103 (129)
Q Consensus 82 ~I~nv~~~D~g~~Y~C~a~N~l 103 (129)
.|++++.+|+| .|.|.+.|.-
T Consensus 83 ~I~~v~~~D~G-~Y~C~v~~~~ 103 (116)
T cd05715 83 VIHNLQFTDNG-TYTCDVKNPP 103 (116)
T ss_pred EEeeCCcccCE-EEEEEEEeCC
Confidence 99999999997 9999999873
No 127
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=98.56 E-value=3e-07 Score=65.32 Aligned_cols=78 Identities=14% Similarity=0.238 Sum_probs=52.8
Q ss_pred EeeeeeeEEEeCCeEEEEeeCCC-C-------CCCceeEeEEeecceeeecccC---CCceEEEccCccEEEeccCCCCC
Q psy5694 23 INVNYEHNVILGNTAVLRCQIPS-Y-------MSEYIIVTSWIQDDVNIYLNTD---TGGKYVVLSSGDLYVFNATPNDG 91 (129)
Q Consensus 23 ~~v~~~~~V~~GntAvL~C~vp~-~-------~~~~v~v~sW~~d~~~i~~~~~---~~~ry~vlpsG~L~I~nv~~~D~ 91 (129)
++-+.- .+++|++++|+|.... + ..+....+.|.|++..+....+ .+.|..+ ..+.|.|.++..+|.
T Consensus 5 ~~~~~~-~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~-~~~~Lwf~Pa~~eDS 82 (104)
T cd05896 5 VDLKKY-MVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSK-EEDSIWFRPAELQDS 82 (104)
T ss_pred cceeeE-EEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEE-eCCEEEEEeCChhhC
Confidence 343444 8999999999999732 1 1222236899999633322111 1235543 467899999999999
Q ss_pred CcceEEEeeccc
Q psy5694 92 YKSYRCRTVNKI 103 (129)
Q Consensus 92 g~~Y~C~a~N~l 103 (129)
| .|.|+++|.-
T Consensus 83 G-~Y~C~~rN~t 93 (104)
T cd05896 83 G-LYTCVLRNST 93 (104)
T ss_pred e-EEEEEECCCC
Confidence 8 9999999973
No 128
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=98.56 E-value=4.7e-07 Score=62.36 Aligned_cols=79 Identities=22% Similarity=0.389 Sum_probs=51.7
Q ss_pred eEEEEeeCCCCCCCceeEeEEeecc-----eee---ecc-c-----CCCceEEEc-----cCccEEEeccCCCCCCcceE
Q psy5694 36 TAVLRCQIPSYMSEYIIVTSWIQDD-----VNI---YLN-T-----DTGGKYVVL-----SSGDLYVFNATPNDGYKSYR 96 (129)
Q Consensus 36 tAvL~C~vp~~~~~~v~v~sW~~d~-----~~i---~~~-~-----~~~~ry~vl-----psG~L~I~nv~~~D~g~~Y~ 96 (129)
+|.|+|......++....+.|.+.. ..+ ... . +-.+|.... .++.|.|+||+.+|+| .|.
T Consensus 2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~G-tY~ 80 (100)
T cd05888 2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEG-KYK 80 (100)
T ss_pred CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccce-EEE
Confidence 6899999976554446689999843 122 111 0 001333332 3778999999999998 999
Q ss_pred EEeecccCCeEEecccceEEEE
Q psy5694 97 CRTVNKITGESQASVFQTRLSI 118 (129)
Q Consensus 97 C~a~N~ltge~k~S~~~~~L~V 118 (129)
|...+.-.|.. +. ...|+|
T Consensus 81 C~v~~~p~g~~--~~-~~~L~V 99 (100)
T cd05888 81 CRVITFPAGNF--EA-ELVLTV 99 (100)
T ss_pred EEEEeCCCCCe--ee-EEEEEe
Confidence 99999766763 32 335555
No 129
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=98.51 E-value=9.4e-07 Score=61.49 Aligned_cols=77 Identities=25% Similarity=0.368 Sum_probs=53.8
Q ss_pred eEEEEeeCCCCCCCceeEeEEeecc----eee--ec-c------cCCCceEEE----ccCccEEEeccCCCCCCcceEEE
Q psy5694 36 TAVLRCQIPSYMSEYIIVTSWIQDD----VNI--YL-N------TDTGGKYVV----LSSGDLYVFNATPNDGYKSYRCR 98 (129)
Q Consensus 36 tAvL~C~vp~~~~~~v~v~sW~~d~----~~i--~~-~------~~~~~ry~v----lpsG~L~I~nv~~~D~g~~Y~C~ 98 (129)
.|.|+|..+.. +.+..++|.|.. ..| +. . .+-.+|... +.++.|.|+||+.+|+| .|+|.
T Consensus 2 ~vtL~C~~~~~--~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G-~Y~C~ 78 (96)
T cd05887 2 NVTLKCRIQVN--ETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIG-VYICK 78 (96)
T ss_pred CEEEEEEecCC--CcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccE-EEEEE
Confidence 58899998753 346789998742 222 11 0 011245554 34788999999999997 99999
Q ss_pred eecccCCeEEecccceEEEE
Q psy5694 99 TVNKITGESQASVFQTRLSI 118 (129)
Q Consensus 99 a~N~ltge~k~S~~~~~L~V 118 (129)
..+.-.|..+.+. .|+|
T Consensus 79 v~tfP~G~~~~~~---~l~~ 95 (96)
T cd05887 79 AVTFPLGNTQSST---TVTV 95 (96)
T ss_pred EEeCCCCCeeEEE---EEEE
Confidence 9998889976655 5554
No 130
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=98.50 E-value=7.1e-07 Score=62.71 Aligned_cols=70 Identities=17% Similarity=0.303 Sum_probs=47.4
Q ss_pred eCCeEEEEeeCCCCCCC-------ceeEeEEeecc----eeee--cc------cCCCceEEEc------cCccEEEeccC
Q psy5694 33 LGNTAVLRCQIPSYMSE-------YIIVTSWIQDD----VNIY--LN------TDTGGKYVVL------SSGDLYVFNAT 87 (129)
Q Consensus 33 ~GntAvL~C~vp~~~~~-------~v~v~sW~~d~----~~i~--~~------~~~~~ry~vl------psG~L~I~nv~ 87 (129)
.|.+|+|+|.++..+.+ ....+.|.+.. ..+. .. ..-.+|+.+. .+..|.|+|++
T Consensus 1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~ 80 (110)
T cd05878 1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR 80 (110)
T ss_pred CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence 48999999999654421 13568998852 1211 00 1123577763 23559999999
Q ss_pred CCCCCcceEEEeeccc
Q psy5694 88 PNDGYKSYRCRTVNKI 103 (129)
Q Consensus 88 ~~D~g~~Y~C~a~N~l 103 (129)
.+|+| .|+|.+.+..
T Consensus 81 ~sD~G-~Y~C~v~~~~ 95 (110)
T cd05878 81 SSDSG-VYRCEVMHGI 95 (110)
T ss_pred hhhCE-EEEEEEEeCC
Confidence 99997 9999999753
No 131
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.50 E-value=4.7e-07 Score=59.46 Aligned_cols=62 Identities=18% Similarity=0.278 Sum_probs=42.1
Q ss_pred EEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCc-------cEEEeccCCCCCCcceEEEeecccC
Q psy5694 37 AVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSG-------DLYVFNATPNDGYKSYRCRTVNKIT 104 (129)
Q Consensus 37 AvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG-------~L~I~nv~~~D~g~~Y~C~a~N~lt 104 (129)
+.|.|.+.++.+. +.++|++|+..|... .....++++| .|.|....++|.+ .|+|+|.|..-
T Consensus 2 ~~L~C~v~g~~P~--~~v~W~~~g~~l~~~---~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~-~y~C~a~n~~l 70 (82)
T cd05759 2 YNLTCRARGAKPA--AEIIWFRDGEVLDGA---TYSKELLKDGKRETTVSTLPITPSDHDTGR-TFTCRARNEAL 70 (82)
T ss_pred EEEEEEEeCccCC--CEEEEEECCEEccCc---eeeeeEecCCCeEEEEEEEEEeCceecCCC-EEEEEEcCccC
Confidence 5799999875332 579999999877421 1112234444 5777777776665 99999999863
No 132
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=98.48 E-value=9e-07 Score=59.87 Aligned_cols=64 Identities=17% Similarity=0.252 Sum_probs=46.0
Q ss_pred EEEEeeCCCCCCCceeEeEEeecceeeeccc---CCCceEEEccCccEEEeccCCCCCCcceEEEeecccCC
Q psy5694 37 AVLRCQIPSYMSEYIIVTSWIQDDVNIYLNT---DTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITG 105 (129)
Q Consensus 37 AvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~---~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~ltg 105 (129)
+.|.|..+++-| .+.++|++|+..|.... ..++.|.+ +|.|.|.-....|. +.|.|.|.|....
T Consensus 2 ~~L~C~s~~skP--~a~i~W~k~~~~l~~~~~~~~~~~~~t~--~s~L~~~~~~~Ddg-~~~~C~A~n~a~~ 68 (80)
T cd05885 2 VELTCLSPRSKP--AATLRWYRDRKELKGVISQQENGKTVSV--SNTIRFPVDRKDDG-AILSCEASHPALV 68 (80)
T ss_pred EEEEEeCCCccC--CCeEEEEECCEECCCCcccccCCceEEE--EEEEEEEeeeccCC-cEEEEEEEChhhC
Confidence 679999988744 37899999998884321 12344553 68899966555555 6999999998753
No 133
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.47 E-value=1.1e-06 Score=62.59 Aligned_cols=70 Identities=19% Similarity=0.319 Sum_probs=48.2
Q ss_pred eCCeEEEEeeCCCCCCC---------ceeEeEEeecc----ee-eecc-------cCCCceEEEc------cCccEEEec
Q psy5694 33 LGNTAVLRCQIPSYMSE---------YIIVTSWIQDD----VN-IYLN-------TDTGGKYVVL------SSGDLYVFN 85 (129)
Q Consensus 33 ~GntAvL~C~vp~~~~~---------~v~v~sW~~d~----~~-i~~~-------~~~~~ry~vl------psG~L~I~n 85 (129)
.|++++|+|.+....++ ..+.+.|.|-. .. |... .+-.+|+.+. .+-.|.|+|
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n 80 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE 80 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence 48999999998654321 14578998742 12 2111 1122477764 256699999
Q ss_pred cCCCCCCcceEEEeeccc
Q psy5694 86 ATPNDGYKSYRCRTVNKI 103 (129)
Q Consensus 86 v~~~D~g~~Y~C~a~N~l 103 (129)
++.+|+| .|+|...+.+
T Consensus 81 l~~sDsG-~Y~C~V~~g~ 97 (112)
T cd05900 81 LRSNDSG-TYRCEVMHGI 97 (112)
T ss_pred cccccCE-EEEEEEecCC
Confidence 9999997 9999999876
No 134
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.47 E-value=7.2e-07 Score=61.72 Aligned_cols=69 Identities=22% Similarity=0.303 Sum_probs=49.7
Q ss_pred EEEeCCeEEEEeeCCCCCCCceeEeEEeecc-----eeee-cc--------cCCCceEEEccC----ccEEEeccCCCCC
Q psy5694 30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNIY-LN--------TDTGGKYVVLSS----GDLYVFNATPNDG 91 (129)
Q Consensus 30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-----~~i~-~~--------~~~~~ry~vlps----G~L~I~nv~~~D~ 91 (129)
.|.+|++|.|.|.+.. . ...+.|+|.. ..|. .. ....+||.+..+ -.|.|.+++.+|+
T Consensus 9 ~v~~G~~v~l~C~~~~-~---~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~~Ds 84 (110)
T cd05899 9 IKGRGQSVTLRCSQTS-G---HDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEPEDS 84 (110)
T ss_pred EEcCCCcEEEEEEECC-C---CCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCChhhC
Confidence 8899999999999876 2 2568998853 1221 10 012468876432 3599999999999
Q ss_pred CcceEEEeeccc
Q psy5694 92 YKSYRCRTVNKI 103 (129)
Q Consensus 92 g~~Y~C~a~N~l 103 (129)
| .|.|.+.+..
T Consensus 85 g-~Y~Ca~~~~~ 95 (110)
T cd05899 85 A-VYLCASSLGG 95 (110)
T ss_pred E-EEEEEeeCCC
Confidence 7 9999998753
No 135
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=98.46 E-value=2.1e-06 Score=60.68 Aligned_cols=80 Identities=18% Similarity=0.211 Sum_probs=51.5
Q ss_pred eEeeeeeeEEEeCCeEEEEeeCCCCC---CCceeEeEEeecc-e----ee-e-cc------cCCCceEEEc---cC--cc
Q psy5694 22 EINVNYEHNVILGNTAVLRCQIPSYM---SEYIIVTSWIQDD-V----NI-Y-LN------TDTGGKYVVL---SS--GD 80 (129)
Q Consensus 22 ~~~v~~~~~V~~GntAvL~C~vp~~~---~~~v~v~sW~~d~-~----~i-~-~~------~~~~~ry~vl---ps--G~ 80 (129)
.++....+.+.+|.+++|+|...... .+....+.|.+.. . .+ . .. ..-.+||.++ .. -.
T Consensus 2 ~vq~P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~s 81 (119)
T cd05712 2 GLWMPKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCS 81 (119)
T ss_pred cccCCCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEE
Confidence 34444555899999999999764221 1112457998754 1 11 1 00 0123688874 23 35
Q ss_pred EEEeccCCCCCCcceEEEeecc
Q psy5694 81 LYVFNATPNDGYKSYRCRTVNK 102 (129)
Q Consensus 81 L~I~nv~~~D~g~~Y~C~a~N~ 102 (129)
|.|+|++.+|+| .|.|+....
T Consensus 82 L~I~~l~~~Dsg-~Y~C~~~~~ 102 (119)
T cd05712 82 LLISDAQPEDSG-KYFFRVELG 102 (119)
T ss_pred EEEccCChhhCe-EEEEEEEcC
Confidence 999999999997 999998764
No 136
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.45 E-value=1.4e-06 Score=59.87 Aligned_cols=74 Identities=23% Similarity=0.368 Sum_probs=50.8
Q ss_pred eeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc-----ee-eeccc----CCCceEEEccCc---cEEEeccCCCCC
Q psy5694 25 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VN-IYLNT----DTGGKYVVLSSG---DLYVFNATPNDG 91 (129)
Q Consensus 25 v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-----~~-i~~~~----~~~~ry~vlpsG---~L~I~nv~~~D~ 91 (129)
+... .|-+|++|.|.|.+..... ...+.|++.. .. +.... ...+||.+..++ .|.|+|++.+|.
T Consensus 7 p~~~-~v~~G~~v~L~C~~~~~~~--~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Ds 83 (106)
T cd04980 7 PATL-SVSPGESATISCKASQSVS--SNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPEDA 83 (106)
T ss_pred CCcE-EECCCCCEEEEEEECCCCC--CCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHHC
Confidence 3444 7889999999999865431 1358998743 12 22110 123578775443 499999999999
Q ss_pred CcceEEEeecc
Q psy5694 92 YKSYRCRTVNK 102 (129)
Q Consensus 92 g~~Y~C~a~N~ 102 (129)
| .|.|.+.+.
T Consensus 84 g-~Y~Ca~~~~ 93 (106)
T cd04980 84 A-VYYCQQYGT 93 (106)
T ss_pred E-EEEEEEeCC
Confidence 7 999999764
No 137
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=98.45 E-value=2.3e-07 Score=57.82 Aligned_cols=58 Identities=21% Similarity=0.299 Sum_probs=42.9
Q ss_pred EEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeec
Q psy5694 37 AVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVN 101 (129)
Q Consensus 37 AvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N 101 (129)
+.|.|.+.+.++ .+.++|..+..... ...+.....++.|.|.+|..+|.| .|+|+|.|
T Consensus 18 ~~l~C~~~~~~~--~~~~~W~~~~~~~~----~~~~~~~~~~~~L~i~~v~~~~~g-~y~C~a~N 75 (75)
T PF13927_consen 18 VTLTCSAEGGPP--PPSISWYDSNPSFN----SNSRGSSSSNSTLTISNVTRSDNG-TYTCIASN 75 (75)
T ss_dssp EEEEEEESSEES--SEEEEEETEEEEEE----EEEEEEEEEEEEEEESSCCGGGTE-EEEEEEEE
T ss_pred EEEEEEEccccC--CeEEEEEecCCcee----eeeeeccceeeEEEEccCCHHhCc-EEEEEEEC
Confidence 999999998875 46789992221111 123444455789999999999998 89999987
No 138
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.44 E-value=8.2e-07 Score=60.27 Aligned_cols=84 Identities=20% Similarity=0.309 Sum_probs=54.5
Q ss_pred EEEeCCeEEEEeeCCCCCCCceeEeEEeecc---e--ee-ecc----cCCCceEEEccCcc---EEEeccCCCCCCcceE
Q psy5694 30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD---V--NI-YLN----TDTGGKYVVLSSGD---LYVFNATPNDGYKSYR 96 (129)
Q Consensus 30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~---~--~i-~~~----~~~~~ry~vlpsG~---L~I~nv~~~D~g~~Y~ 96 (129)
.|.+|++|.|.|.+...... ...+.|++-. . .| ... ....+||.+..++. |.|++++.+|+| .|.
T Consensus 2 ~v~~G~~v~l~C~~~~~~~~-~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg-~Y~ 79 (98)
T cd04984 2 SVSPGETVTITCTGSSGNIS-GNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEA-DYY 79 (98)
T ss_pred ccCCCCCEEEEEEEcCCCcC-CCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCE-EEE
Confidence 67899999999998653211 2347897743 1 12 111 11246888765544 999999999997 999
Q ss_pred EEeecccCCeEEecccceEEEE
Q psy5694 97 CRTVNKITGESQASVFQTRLSI 118 (129)
Q Consensus 97 C~a~N~ltge~k~S~~~~~L~V 118 (129)
|.+.+. ++..-.. ..+|+|
T Consensus 80 C~~~~~--~~~~fg~-gT~L~V 98 (98)
T cd04984 80 CQVWDS--NSYVFGG-GTKLTV 98 (98)
T ss_pred EEEccC--CCCEECC-CEEEeC
Confidence 999864 3333343 445554
No 139
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=98.42 E-value=2e-06 Score=58.52 Aligned_cols=79 Identities=19% Similarity=0.279 Sum_probs=51.0
Q ss_pred CCeEEEEeeCCCCCCCceeEeEEeecc----eeee---cc------cCCCceEEEc----cCccEEEeccCCCCCCcceE
Q psy5694 34 GNTAVLRCQIPSYMSEYIIVTSWIQDD----VNIY---LN------TDTGGKYVVL----SSGDLYVFNATPNDGYKSYR 96 (129)
Q Consensus 34 GntAvL~C~vp~~~~~~v~v~sW~~d~----~~i~---~~------~~~~~ry~vl----psG~L~I~nv~~~D~g~~Y~ 96 (129)
|++|.|.|...... .+..+.|.|.. ..|. +. .+-.+|..+. .+..|.|+||+.+|+| .|+
T Consensus 1 G~~vtL~C~~~~~~--~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G-~Y~ 77 (97)
T cd05846 1 GGNVTLSCNLTLPE--EVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEG-CYK 77 (97)
T ss_pred CCcEEEEEEeCCCC--eeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeE-EEE
Confidence 88999999976432 13568998853 1221 10 0112354442 3556999999999997 999
Q ss_pred EEeecccCCeEEecccceEEEE
Q psy5694 97 CRTVNKITGESQASVFQTRLSI 118 (129)
Q Consensus 97 C~a~N~ltge~k~S~~~~~L~V 118 (129)
|...+...|.. +. ...|+|
T Consensus 78 C~~~~~p~g~~--~~-~~~L~v 96 (97)
T cd05846 78 CIFNTFPDGSK--SG-TMCLTV 96 (97)
T ss_pred EEEEeCCCCCe--ee-EEEEEE
Confidence 99988766662 33 345555
No 140
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=98.41 E-value=3.2e-06 Score=58.91 Aligned_cols=79 Identities=19% Similarity=0.257 Sum_probs=51.9
Q ss_pred eEEEEeeCCCC-CCCceeEeEEeecc----eee--ecc-------cCCCceEEEc----cCccEEEeccCCCCCCcceEE
Q psy5694 36 TAVLRCQIPSY-MSEYIIVTSWIQDD----VNI--YLN-------TDTGGKYVVL----SSGDLYVFNATPNDGYKSYRC 97 (129)
Q Consensus 36 tAvL~C~vp~~-~~~~v~v~sW~~d~----~~i--~~~-------~~~~~ry~vl----psG~L~I~nv~~~D~g~~Y~C 97 (129)
.|.|+|.+... +...+..++|.+.+ ..+ +.. ..-.+|.... .++.|.|+|++.+|+| .|+|
T Consensus 2 ~v~L~C~f~~~~~~~~~~~V~W~k~~~~~~~~va~y~~~~g~~~~~~f~~Rv~f~~~~~~daSi~i~nl~~~D~G-~Y~C 80 (99)
T cd05886 2 DVVLHCSFINPLPPVKITQVTWQKLTNGSKQNVAIYNPSMGVSVLPPYRERVTFKNPSFEDGTISLSRLELEDEG-VYIC 80 (99)
T ss_pred cEEEEeEeecCCCCCCeEEEEEEECCCCCceEEEEECCcCCcccCccccCcEEEcCCCCCcceEEEcCCccccCE-EEEE
Confidence 58899999753 33445678998741 222 221 0113555543 2589999999999998 9999
Q ss_pred EeecccCCeEEecccceEEEE
Q psy5694 98 RTVNKITGESQASVFQTRLSI 118 (129)
Q Consensus 98 ~a~N~ltge~k~S~~~~~L~V 118 (129)
...|.-.|.. +. ...|+|
T Consensus 81 ~v~t~P~g~~--~~-~~~L~V 98 (99)
T cd05886 81 EFATFPTGNR--ES-QLNLTV 98 (99)
T ss_pred EEEeCCCCCe--EE-EEEEEE
Confidence 9999766752 32 346665
No 141
>PHA03376 BARF1; Provisional
Probab=98.38 E-value=4.7e-06 Score=65.48 Aligned_cols=98 Identities=18% Similarity=0.102 Sum_probs=67.4
Q ss_pred eEEEeCCeEEEEeeCCCCCCCceeEeEEeec----c-eeeecc--------cCCCceEEEcc-Cc--cEEEeccCCCCCC
Q psy5694 29 HNVILGNTAVLRCQIPSYMSEYIIVTSWIQD----D-VNIYLN--------TDTGGKYVVLS-SG--DLYVFNATPNDGY 92 (129)
Q Consensus 29 ~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d----~-~~i~~~--------~~~~~ry~vlp-sG--~L~I~nv~~~D~g 92 (129)
|.+..|..|+|.|.......+..-.+.|+|+ + ..|.-. .+-.+|+.+.. +| .|+|.+++.+|.|
T Consensus 21 Vta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDdG 100 (221)
T PHA03376 21 VTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHDG 100 (221)
T ss_pred hhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCCc
Confidence 3788999999999986433334567999994 4 333221 12246777743 34 3999999999998
Q ss_pred cceEEEeecccCCeEEecc----cceEEEEecCCCCCCC
Q psy5694 93 KSYRCRTVNKITGESQASV----FQTRLSITGKLKSLCT 127 (129)
Q Consensus 93 ~~Y~C~a~N~ltge~k~S~----~~~~L~V~ep~~~~~~ 127 (129)
+|+|+.....+|..|..- -+..|.|+...+.+|.
T Consensus 101 -tY~C~fQkge~~~~k~ehLt~V~~~~Lsv~a~~~dFp~ 138 (221)
T PHA03376 101 -NYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQFPD 138 (221)
T ss_pred -eEEEEEEcCCCceeeeeeeeeeecceEEEEeccccCCC
Confidence 999999987777766532 2233777776666654
No 142
>KOG4222|consensus
Probab=98.37 E-value=4.2e-07 Score=85.07 Aligned_cols=93 Identities=20% Similarity=0.330 Sum_probs=78.7
Q ss_pred eeeeeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccC-ccEEEeccCCCCCCcceE
Q psy5694 18 KQKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSS-GDLYVFNATPNDGYKSYR 96 (129)
Q Consensus 18 ~q~y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlps-G~L~I~nv~~~D~g~~Y~ 96 (129)
.++|..++.+. .|..|.+|.+.|++++-| .+.+.|-+++..+. -.||.|+-+ -.|.|.+++..|+| +|.
T Consensus 225 ~P~f~~rp~~~-~v~~g~~~~f~c~v~GdP---~P~Vrwkk~~~~~P-----~~ry~i~~d~qtl~i~r~tp~deg-~y~ 294 (1281)
T KOG4222|consen 225 KPWFWKRPKDL-AVLVGAAAEFDCRVGGDP---QPTVRWKKDDPSLP-----RSRYSILDDTQTLRIDRVTPTDEG-TYV 294 (1281)
T ss_pred CCccccccccc-eeecccccccccccCCCC---CCceeeeccCCCCC-----ccceeeeeccccccccccCCCccc-cee
Confidence 47899999999 999999999999999776 46789988876663 478888765 89999999999998 999
Q ss_pred EEeecccCCeEEecccceEEEEecCCCC
Q psy5694 97 CRTVNKITGESQASVFQTRLSITGKLKS 124 (129)
Q Consensus 97 C~a~N~ltge~k~S~~~~~L~V~ep~~~ 124 (129)
|.|.|.++|- +. .+.|+|+.|.+.
T Consensus 295 C~a~n~vG~l---~a-sa~ltV~apP~f 318 (1281)
T KOG4222|consen 295 CPAENLVGGL---EA-SATLTVQAPPSF 318 (1281)
T ss_pred eecccccccc---cc-ccceEEecCccc
Confidence 9999999554 44 558999988764
No 143
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=98.36 E-value=1.1e-06 Score=58.54 Aligned_cols=67 Identities=22% Similarity=0.483 Sum_probs=45.0
Q ss_pred eCCeEEEEeeCCCCCCCceeEeEEeecceeeeccc-------CCCceEEEccCccEEEeccCCCCCCcceEEEeeccc
Q psy5694 33 LGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNT-------DTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKI 103 (129)
Q Consensus 33 ~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~-------~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~l 103 (129)
.|+.+.|.|.+.++.++ ...++|++|+..+.... ..++.|.+. ..|.|....+.|.+ .|.|++.|.-
T Consensus 12 ~~~~~~L~C~a~g~~P~-~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~--s~l~v~~~~~~~~~-~y~C~v~h~~ 85 (95)
T cd00098 12 LGGSVTLTCLATGFYPP-DITVTWLKNGKELTSGVTTTPPVPNSDGTYSVS--SQLTVSPSDWNSGD-TYTCVVTHES 85 (95)
T ss_pred cCCCeEEEEEEeeEECC-CcEEEEEECCEECCCceeccccccCCCCCEEEE--EEEEECHHHhCCCC-CEEEEEEeCC
Confidence 59999999999887332 24689999997763221 122333331 34666666665665 9999999975
No 144
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=98.32 E-value=2.8e-06 Score=58.05 Aligned_cols=79 Identities=15% Similarity=0.196 Sum_probs=50.1
Q ss_pred EEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeec---ccCCCceEEEccCccEEEeccCCCCCCcceEEEeecc--cC
Q psy5694 30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYL---NTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNK--IT 104 (129)
Q Consensus 30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~---~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~--lt 104 (129)
.|.+|++++|+|+.+. ++ ....|.|++....+ .....+++. .++.|.+++.+|+| .|+|..... ..
T Consensus 11 vV~~G~~VTL~C~~~~---~~-~~f~l~k~g~~~~~~~~~~~~~~~~~----a~f~I~~~~~~~~G-~Y~C~~~~~~~~~ 81 (94)
T cd05711 11 VVPSGENVTLQCHSDI---RF-DRFILYKEGRSKPVLHLYEKHHGGFQ----ASFPLGPVTPAHAG-TYRCYGSYNHSLY 81 (94)
T ss_pred ccCCCCeEEEEEecCC---CC-CEEEEEECCCCCCceecccccCCeEE----EEEEecCCCcccCE-EEEEEEECCCCCc
Confidence 5789999999998764 22 35799998832211 001123343 37899999999998 999998532 22
Q ss_pred CeEEecccceEEEE
Q psy5694 105 GESQASVFQTRLSI 118 (129)
Q Consensus 105 ge~k~S~~~~~L~V 118 (129)
.-+..|+ +..|.|
T Consensus 82 ~wS~~Sd-pl~l~V 94 (94)
T cd05711 82 EWSAPSD-PLKIVV 94 (94)
T ss_pred cccCCCC-CeEEeC
Confidence 3333344 555543
No 145
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.32 E-value=2.6e-06 Score=59.19 Aligned_cols=71 Identities=14% Similarity=0.284 Sum_probs=49.1
Q ss_pred EEEeCCeEEEEeeCCCCCCCceeEeEEeecc-----ee-eecc---------cCCCceEEEccC-----ccEEEeccCCC
Q psy5694 30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VN-IYLN---------TDTGGKYVVLSS-----GDLYVFNATPN 89 (129)
Q Consensus 30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-----~~-i~~~---------~~~~~ry~vlps-----G~L~I~nv~~~ 89 (129)
.+-+|++|.|.|.+...- .....+.|++.. .. +... ....+||.+..+ ..|.|.+++.+
T Consensus 9 ~~~~G~~v~l~C~~~~~~-~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~ 87 (116)
T cd04982 9 TREESKSVTISCKVSGID-FSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQNLEKE 87 (116)
T ss_pred EeCCCCCEEEEEEEeCCC-ccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEECCHH
Confidence 778899999999986521 112468998852 11 2111 012478887533 36999999999
Q ss_pred CCCcceEEEeecc
Q psy5694 90 DGYKSYRCRTVNK 102 (129)
Q Consensus 90 D~g~~Y~C~a~N~ 102 (129)
|+| .|.|.+.+.
T Consensus 88 Dsg-~Y~C~~~~~ 99 (116)
T cd04982 88 DSA-TYYCAYWES 99 (116)
T ss_pred HCE-EEEEEEecC
Confidence 997 999999753
No 146
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=98.30 E-value=4.1e-06 Score=56.12 Aligned_cols=60 Identities=20% Similarity=0.241 Sum_probs=41.1
Q ss_pred EEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEc--cC-ccEEEec-----cCCCCCCcceEEEeeccc
Q psy5694 37 AVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVL--SS-GDLYVFN-----ATPNDGYKSYRCRTVNKI 103 (129)
Q Consensus 37 AvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vl--ps-G~L~I~n-----v~~~D~g~~Y~C~a~N~l 103 (129)
+.|.|.+.++-|. +.++|++|+..|... ...+. ++ |...+.. +..+|.|+.|+|++.|.-
T Consensus 2 ~~LtC~a~g~~P~--~~ItW~k~g~~l~~~-----~~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~ 69 (83)
T cd07705 2 AKLRCTSSGSKPA--ANIKWRKGDQELEGA-----PTSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHES 69 (83)
T ss_pred EEEEEEecCccCC--CEeEEEECCEECCCc-----ceeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcc
Confidence 6799999887443 489999999877421 11222 23 2344444 666777789999999985
No 147
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=98.25 E-value=8.5e-06 Score=57.59 Aligned_cols=67 Identities=19% Similarity=0.260 Sum_probs=52.1
Q ss_pred EEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccC--------CCceEEEccCccEEEeccCCCCCCcceEEEeec
Q psy5694 30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTD--------TGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVN 101 (129)
Q Consensus 30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~--------~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N 101 (129)
.|-.|..+.|+|.+.++|+. ....|.++...+....+ ...||. ..|.+..+..+|.| .|.|.|.|
T Consensus 14 ~v~~gE~~~L~V~ieAYP~p--~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~----S~L~L~Rlk~~E~G-~YTf~a~N 86 (101)
T cd05860 14 FVNAGENLDLIVEYEAYPKP--EHQQWIYMNRTLTNTSDHYVKSRNESNNRYV----SELHLTRLKGTEGG-TYTFLVSN 86 (101)
T ss_pred EEECCCCEEEEEEEEeCCCC--eeeEEEcCCcccCccccceeEEeccCceEEE----EEEEEeecChhhCc-EEEEEEEC
Confidence 78999999999999999963 33799998755432211 112342 47999999999998 99999999
Q ss_pred cc
Q psy5694 102 KI 103 (129)
Q Consensus 102 ~l 103 (129)
..
T Consensus 87 ~~ 88 (101)
T cd05860 87 SD 88 (101)
T ss_pred CC
Confidence 97
No 148
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=98.25 E-value=5e-06 Score=56.18 Aligned_cols=72 Identities=15% Similarity=0.225 Sum_probs=50.1
Q ss_pred eEEEeCCeEEEEeeCCCCCCCceeEeEEeecc-----eeeecc----cCCCceEEEcc---Cc--cEEEeccCCCCCCcc
Q psy5694 29 HNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNIYLN----TDTGGKYVVLS---SG--DLYVFNATPNDGYKS 94 (129)
Q Consensus 29 ~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-----~~i~~~----~~~~~ry~vlp---sG--~L~I~nv~~~D~g~~ 94 (129)
+.|.+|.+|.|+|....... ...+.|.+.. ..|... ....+|+.+.. +| .|.|.+++.+|+| .
T Consensus 2 v~~~~G~~vtl~C~~~~~~~--~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG-~ 78 (98)
T cd05716 2 VTGELGGSVTIPCPYPPKNR--SYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAG-W 78 (98)
T ss_pred EEEEeCCeEEEEeeCCCCCC--CcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCE-E
Confidence 36889999999999865322 2457998854 122100 12346887742 23 4999999999997 9
Q ss_pred eEEEeeccc
Q psy5694 95 YRCRTVNKI 103 (129)
Q Consensus 95 Y~C~a~N~l 103 (129)
|.|.+.+..
T Consensus 79 Y~C~~~~~~ 87 (98)
T cd05716 79 YWCGVGDDG 87 (98)
T ss_pred EEEEcccCC
Confidence 999998764
No 149
>KOG4194|consensus
Probab=98.22 E-value=1.8e-06 Score=77.45 Aligned_cols=98 Identities=15% Similarity=0.213 Sum_probs=70.4
Q ss_pred eeeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecc-cCCCceEEE-----------ccCccEEEeccC
Q psy5694 20 KYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLN-TDTGGKYVV-----------LSSGDLYVFNAT 87 (129)
Q Consensus 20 ~y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~-~~~~~ry~v-----------lpsG~L~I~nv~ 87 (129)
.-..+|++. .++.|..+.|.|.+-++.++. -.+.|.+|....+.. .+..-+|.. .-.|.|+..||+
T Consensus 505 qI~~qPe~~-~al~g~nirftC~a~sssasp-lsi~WR~dnevq~rv~ved~a~~~~q~r~~~~~e~~~~~~~L~L~nVt 582 (873)
T KOG4194|consen 505 QIVTQPETV-SALIGENIRFTCNAYSSSASP-LSIEWRKDNEVQPRVDVEDFATFLSQNRNGTFGEREEYTAILHLDNVT 582 (873)
T ss_pred ceecCchHh-hhhhccceEEEEEeccCCCCC-ceeEeeeccccCcccchhcchhhhhhhccCccchhhhhhheeeeeeee
Confidence 456677777 899999999999997654432 458999988533211 122222221 125779999999
Q ss_pred CCCCCcceEEEeecccCCeEEecccceEEEEecCCC
Q psy5694 88 PNDGYKSYRCRTVNKITGESQASVFQTRLSITGKLK 123 (129)
Q Consensus 88 ~~D~g~~Y~C~a~N~ltge~k~S~~~~~L~V~ep~~ 123 (129)
.+|+| .|+|++.|.+ |.+ -|. .++|+|...++
T Consensus 583 ~td~g-rYQCVvtN~F-GSt-ysq-k~KltV~~~Ps 614 (873)
T KOG4194|consen 583 FTDEG-RYQCVVTNHF-GST-YSQ-KAKLTVNQAPS 614 (873)
T ss_pred cccCc-eEEEEEeccc-Ccc-hhh-eeEEEeeccCc
Confidence 99998 9999999999 663 454 78999987654
No 150
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=98.19 E-value=8.1e-06 Score=57.37 Aligned_cols=80 Identities=11% Similarity=0.172 Sum_probs=52.6
Q ss_pred eEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCC--ceEEEccCccEEEeccCCCCCCcceEEEe
Q psy5694 22 EINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTG--GKYVVLSSGDLYVFNATPNDGYKSYRCRT 99 (129)
Q Consensus 22 ~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~--~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a 99 (129)
+..+... .+.+|+...|.|.+++.-+...-.+.|++++..|......+ .+- ....-.|.+. +..+|.|+.|+|+|
T Consensus 5 ~l~~~p~-~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~-~~~~stlt~~-~~r~D~g~~~sC~A 81 (100)
T cd05755 5 ELSPLPS-WQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSP-VNAPATITIT-VDREDHGANFSCET 81 (100)
T ss_pred EEecCCC-cccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCC-ceeEEEEEEe-cchhhCCcEEEEEE
Confidence 3444455 67899999999999887443222479999997774321010 000 1122345554 78899999999999
Q ss_pred ecccC
Q psy5694 100 VNKIT 104 (129)
Q Consensus 100 ~N~lt 104 (129)
.+.+.
T Consensus 82 ~l~l~ 86 (100)
T cd05755 82 ELDLR 86 (100)
T ss_pred EeccC
Confidence 99883
No 151
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=98.16 E-value=1.2e-05 Score=53.28 Aligned_cols=62 Identities=16% Similarity=0.290 Sum_probs=40.1
Q ss_pred EEEEeeCCCCCCCceeEeEEeecceeeeccc-----CCCceEEEccCccEEEeccCCCCCCcceEEEeeccc
Q psy5694 37 AVLRCQIPSYMSEYIIVTSWIQDDVNIYLNT-----DTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKI 103 (129)
Q Consensus 37 AvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~-----~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~l 103 (129)
+.|.|.+.++-+. +.++|++++..|.... ..++.|.+. ..|.+ ..+.+|.|+.|+|++.|..
T Consensus 2 ~~L~C~~~~~~P~--~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~--s~l~~-~~~~~d~g~~~~C~v~h~~ 68 (82)
T cd05761 2 VELTCTSSGSKPA--ATIRWFKGDKELKGVKLKEEDENGKTFTVT--SSLRF-QVDREDDGAPIICRVDHPA 68 (82)
T ss_pred EEEEEEecCcCcC--CeEEEEECCEEccCceeeEecCCCCEEEEE--EEEEE-EcchhhCCCEEEEEEeChh
Confidence 6799999877333 5899999997774210 012233331 23333 5666677779999999985
No 152
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=98.16 E-value=1e-05 Score=56.04 Aligned_cols=71 Identities=21% Similarity=0.281 Sum_probs=46.9
Q ss_pred eEEEeCCeEEEEeeCCCCCCCceeEeEEeecc-e--e------ee-ccc--------CCCceEEE--ccCc---cEEEec
Q psy5694 29 HNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-V--N------IY-LNT--------DTGGKYVV--LSSG---DLYVFN 85 (129)
Q Consensus 29 ~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-~--~------i~-~~~--------~~~~ry~v--lpsG---~L~I~n 85 (129)
+.|-.|++|.|.|.+..... ...+.|++-. . + +. ... -..+||.+ .+++ .|.|.+
T Consensus 1 ~~v~~G~~vtL~C~~~~~~~--~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~ 78 (107)
T cd07700 1 ILVQTNNTVKLSCEAKGISE--NTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINR 78 (107)
T ss_pred CEEcCCCCEEEEEEEecCCC--CCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECC
Confidence 36788999999999764321 2368998743 1 1 11 100 01357765 3333 399999
Q ss_pred cCCCCCCcceEEEeecc
Q psy5694 86 ATPNDGYKSYRCRTVNK 102 (129)
Q Consensus 86 v~~~D~g~~Y~C~a~N~ 102 (129)
++.+|+| .|.|...+.
T Consensus 79 ~~~~Dsg-~YyCa~~~~ 94 (107)
T cd07700 79 VKPEDSG-TYFCMTVGS 94 (107)
T ss_pred CCHHHCE-EEEEeEcCC
Confidence 9999997 999998743
No 153
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=98.14 E-value=2.3e-05 Score=54.39 Aligned_cols=69 Identities=29% Similarity=0.389 Sum_probs=49.1
Q ss_pred eEEEEeeCCCCCCCceeEeEEeecc----eee--e-cc--c----CCCceEEEc----cCccEEEeccCCCCCCcceEEE
Q psy5694 36 TAVLRCQIPSYMSEYIIVTSWIQDD----VNI--Y-LN--T----DTGGKYVVL----SSGDLYVFNATPNDGYKSYRCR 98 (129)
Q Consensus 36 tAvL~C~vp~~~~~~v~v~sW~~d~----~~i--~-~~--~----~~~~ry~vl----psG~L~I~nv~~~D~g~~Y~C~ 98 (129)
.+.|.|..+. ++.+..++|.|-. ..| + +. . +-.+|.... .++.|.|+||+.+|+| .|+|.
T Consensus 2 ~vtL~C~~~~--~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G-~Y~C~ 78 (96)
T cd05889 2 KMKLECVYPK--TGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVG-LYCCS 78 (96)
T ss_pred CEEEEeEcCC--CCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCE-EEEEE
Confidence 5789999975 3457889998842 123 1 11 0 112455544 3688999999999998 99999
Q ss_pred eecccCCeE
Q psy5694 99 TVNKITGES 107 (129)
Q Consensus 99 a~N~ltge~ 107 (129)
....-.|..
T Consensus 79 ~~t~P~g~~ 87 (96)
T cd05889 79 LVTYPQGSW 87 (96)
T ss_pred EEeCCCCCe
Confidence 998887874
No 154
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.12 E-value=2.3e-05 Score=53.27 Aligned_cols=63 Identities=13% Similarity=0.199 Sum_probs=44.4
Q ss_pred EEEEeeCCCCCCCceeEeEEeecceeeecccC----CCceEEEccCccEEEeccCCCCCCcceEEEeecccC
Q psy5694 37 AVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTD----TGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKIT 104 (129)
Q Consensus 37 AvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~----~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~lt 104 (129)
+.|.|...++-| .+.++|++++.+|....+ .++.+.+. ..|.+ .++.+|.|+.|+|+|.|+.-
T Consensus 2 ~~L~C~s~gSkP--~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~--S~L~~-~p~~eDdG~~~~C~a~~~~l 68 (82)
T cd05883 2 IELNCTAMASKP--AATIRWFKGNKELTGKSTVEETWSRMFTVT--SQLML-KVTKEDDGVPVICLVDHPAV 68 (82)
T ss_pred EEEEEEecCCCC--CCEEEEEECCEECcCcccceeccCCCcEEE--EEEEE-ECchhhCCCEEEEEEcCccc
Confidence 468999988855 378999999987743211 11223332 34555 78999999999999999863
No 155
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=98.06 E-value=1.2e-05 Score=57.17 Aligned_cols=70 Identities=19% Similarity=0.244 Sum_probs=45.9
Q ss_pred eCCeEEEEeeCCCCCC--C--ceeEeEEeec------c-eeee-cc-------cCCCceEEEcc------CccEEEeccC
Q psy5694 33 LGNTAVLRCQIPSYMS--E--YIIVTSWIQD------D-VNIY-LN-------TDTGGKYVVLS------SGDLYVFNAT 87 (129)
Q Consensus 33 ~GntAvL~C~vp~~~~--~--~v~v~sW~~d------~-~~i~-~~-------~~~~~ry~vlp------sG~L~I~nv~ 87 (129)
.|.+|.|+|++...|. . ..+.+.|.+- . ..+. .. .+-.+|..+.. +-.|.|+|++
T Consensus 1 ~~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~ 80 (110)
T cd05902 1 LSSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLR 80 (110)
T ss_pred CCCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCC
Confidence 3889999999543222 1 2467899874 1 1111 10 12245766643 3469999999
Q ss_pred CCCCCcceEEEeeccc
Q psy5694 88 PNDGYKSYRCRTVNKI 103 (129)
Q Consensus 88 ~~D~g~~Y~C~a~N~l 103 (129)
.+|.| .|+|...+..
T Consensus 81 ~~D~G-~Y~C~v~~g~ 95 (110)
T cd05902 81 YSDSG-TYRCEVVLGI 95 (110)
T ss_pred HHHCE-EEEEEEEECC
Confidence 99997 9999999853
No 156
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.04 E-value=2.9e-05 Score=54.09 Aligned_cols=71 Identities=18% Similarity=0.256 Sum_probs=49.8
Q ss_pred EEEeCCeEEEEeeCCCCCCCceeEeEEeecc-----eeeec---c--cCCCceEEEc--cC-c--cEEEeccCCCCCCcc
Q psy5694 30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNIYL---N--TDTGGKYVVL--SS-G--DLYVFNATPNDGYKS 94 (129)
Q Consensus 30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-----~~i~~---~--~~~~~ry~vl--ps-G--~L~I~nv~~~D~g~~ 94 (129)
.|.+|.+|.|+|.+..... ...+.|.+-. ..|.. . ....+||.+. .+ + .|.|.+++.+|.| .
T Consensus 10 ~~~~G~~v~L~C~~~~~~~--~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~Dsg-~ 86 (116)
T cd07706 10 SVQVGEEVTLNCRYETSWT--NYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLEDSA-K 86 (116)
T ss_pred EEcCCCCEEEEEEEeCCCC--ceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHHCE-E
Confidence 8899999999999865322 2468998732 11211 0 1235789875 22 2 4999999999997 9
Q ss_pred eEEEeeccc
Q psy5694 95 YRCRTVNKI 103 (129)
Q Consensus 95 Y~C~a~N~l 103 (129)
|.|...+..
T Consensus 87 Y~C~~~~~~ 95 (116)
T cd07706 87 YFCALSTLG 95 (116)
T ss_pred EEEEEECCC
Confidence 999999653
No 157
>smart00406 IGv Immunoglobulin V-Type.
Probab=98.03 E-value=1.1e-05 Score=51.34 Aligned_cols=62 Identities=16% Similarity=0.296 Sum_probs=41.3
Q ss_pred eEEEEeeCCCCCCCceeEeEEeecc-----eeeecc---------cCCCceEEEccC-----ccEEEeccCCCCCCcceE
Q psy5694 36 TAVLRCQIPSYMSEYIIVTSWIQDD-----VNIYLN---------TDTGGKYVVLSS-----GDLYVFNATPNDGYKSYR 96 (129)
Q Consensus 36 tAvL~C~vp~~~~~~v~v~sW~~d~-----~~i~~~---------~~~~~ry~vlps-----G~L~I~nv~~~D~g~~Y~ 96 (129)
+|.|.|.+...... ...+.|++.. ..|... ....+|+.+... ..|.|.|++.+|+| .|.
T Consensus 1 ~v~l~C~~~~~~~~-~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G-~Y~ 78 (81)
T smart00406 1 SVTLSCKASGFTFS-SYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTG-TYY 78 (81)
T ss_pred CEEEEEEEeccccc-eeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCE-EEE
Confidence 57899998654432 2468998844 122110 023578877643 44999999999997 999
Q ss_pred EEe
Q psy5694 97 CRT 99 (129)
Q Consensus 97 C~a 99 (129)
|..
T Consensus 79 C~v 81 (81)
T smart00406 79 CAV 81 (81)
T ss_pred EcC
Confidence 963
No 158
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.01 E-value=3.3e-05 Score=51.88 Aligned_cols=62 Identities=16% Similarity=0.218 Sum_probs=41.0
Q ss_pred EEEEeeCCCCCCCceeEeEEeecceeeeccc------CCCceEEEccCccEEEeccCCCCCCcceEEEeeccc
Q psy5694 37 AVLRCQIPSYMSEYIIVTSWIQDDVNIYLNT------DTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKI 103 (129)
Q Consensus 37 AvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~------~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~l 103 (129)
+.|.|.+.++-|. ..++|++++..+.... ..++.|.+. -.|.|. .+.+|.|..|+|++.|..
T Consensus 2 ~~LtC~a~gf~P~--~~itW~kng~~l~~~~~~~~~~~~~~t~~~~--s~L~~~-~~~~d~g~~ytC~v~h~~ 69 (83)
T cd05884 2 MQLTCKTSGSKPA--ADIRWFKNDKEIKDVKYLKEEDANRKTFTVS--STLDFR-VDRSDDGVAIICRVDHES 69 (83)
T ss_pred EEEEEEeCCccCC--CEEEEEECCEECcCceeeEeeCCCCCEEEEE--EEEEEE-cccccCCCEEEEEEechh
Confidence 5799999887554 6789999997763210 122333332 245554 555677789999999975
No 159
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=97.94 E-value=6.8e-05 Score=54.15 Aligned_cols=69 Identities=17% Similarity=0.399 Sum_probs=45.1
Q ss_pred CCeEEEEeeCCCCCC--------CceeEeEEeec----------ceee-ecc-------cCCCceEEEc------cCccE
Q psy5694 34 GNTAVLRCQIPSYMS--------EYIIVTSWIQD----------DVNI-YLN-------TDTGGKYVVL------SSGDL 81 (129)
Q Consensus 34 GntAvL~C~vp~~~~--------~~v~v~sW~~d----------~~~i-~~~-------~~~~~ry~vl------psG~L 81 (129)
|.+|+|+|++...|+ ..-..+.|.+- +..+ ... .+-.+|..+. .+-.|
T Consensus 2 ~g~v~LPC~f~~~p~~p~~~~~~~~~~rIkW~~~~~~~~g~~~~e~~Vlv~~~g~~~~~~~y~gRv~l~~~~~~~g~asL 81 (117)
T cd05901 2 SGSVVLPCRFSTLPTLPPSVITTSEFLRIKWTKIEVDKNGKDHKETTVLVAQNGIIKIGQEYMGRVSVPSHPEDQGDASL 81 (117)
T ss_pred CCCEEEeeEEEecCCCCCcccCCCCCcEEEEEEecccccccCCCccEEEEEECCEEEECCcccCcEEeeccCCcCCceEE
Confidence 788999999853331 11246788662 1111 111 1224566654 25669
Q ss_pred EEeccCCCCCCcceEEEeeccc
Q psy5694 82 YVFNATPNDGYKSYRCRTVNKI 103 (129)
Q Consensus 82 ~I~nv~~~D~g~~Y~C~a~N~l 103 (129)
.|+|++.+|.| .|+|...+..
T Consensus 82 ~i~~v~~sD~G-~Y~C~V~~g~ 102 (117)
T cd05901 82 TIVKLRASDAG-VYRCEVMHGI 102 (117)
T ss_pred EEcccccccCE-EEEEEEEECC
Confidence 99999999997 9999999876
No 160
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=97.93 E-value=6e-05 Score=53.34 Aligned_cols=90 Identities=17% Similarity=0.179 Sum_probs=55.7
Q ss_pred eeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc---ee--e---ecc-------cCCCceEEEc--cCc---cEEEe
Q psy5694 25 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD---VN--I---YLN-------TDTGGKYVVL--SSG---DLYVF 84 (129)
Q Consensus 25 v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~---~~--i---~~~-------~~~~~ry~vl--psG---~L~I~ 84 (129)
+... .|-+|++|.|+|.+...... ...+.|++-. .+ | ... ....+||.+. ++. .|.|.
T Consensus 4 ~~~~-~v~~G~~vtL~C~~~~~~~~-~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~ 81 (117)
T cd04981 4 SGPG-LVKPGQSLKLSCKASGFTFT-SYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLN 81 (117)
T ss_pred CCCe-EEcCCCCEEEEEEEeCCCcc-cceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEEC
Confidence 4444 78899999999987532211 1347897733 22 2 110 1124688775 222 59999
Q ss_pred ccCCCCCCcceEEEeeccc---CCeEEecccceEEEE
Q psy5694 85 NATPNDGYKSYRCRTVNKI---TGESQASVFQTRLSI 118 (129)
Q Consensus 85 nv~~~D~g~~Y~C~a~N~l---tge~k~S~~~~~L~V 118 (129)
+++.+|++ .|.|.+.... +++..-.. ..+|.|
T Consensus 82 ~~~~~Dsa-~YyCa~~~~~~~~~~~~~FG~-GT~L~V 116 (117)
T cd04981 82 SLTPEDTA-VYYCARGLGGYGYGYFDYWGQ-GTLVTV 116 (117)
T ss_pred CCCHHHCE-EEEEEEEcCCCCCccEeeECC-CEEEEE
Confidence 99999997 9999987532 23433343 456665
No 161
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=97.93 E-value=8.7e-05 Score=57.76 Aligned_cols=89 Identities=17% Similarity=0.204 Sum_probs=58.8
Q ss_pred eEEEeCCeEEEEeeCCCCCCCceeEeEEeecceee--ecc-c-----CCCceEEEc----cCccEEEeccCCCCCCcceE
Q psy5694 29 HNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNI--YLN-T-----DTGGKYVVL----SSGDLYVFNATPNDGYKSYR 96 (129)
Q Consensus 29 ~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i--~~~-~-----~~~~ry~vl----psG~L~I~nv~~~D~g~~Y~ 96 (129)
+.|.+|+.|.|.|..... ...+.+.|.|....+ +.. . +-.+|+..+ -+-.|.|.||+.+|+| .|+
T Consensus 25 v~V~ege~VtLsCs~t~s--~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeG-cY~ 101 (189)
T PHA02987 25 ITVSEHVNVKISCNKTSS--FNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNG-CYT 101 (189)
T ss_pred EEEcCCCCEEEEEecCCC--CccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCe-EEE
Confidence 378999999999998522 124678999974332 111 0 012466542 3556999999999998 999
Q ss_pred EEeecccCCeEEecccceEEEEecCC
Q psy5694 97 CRTVNKITGESQASVFQTRLSITGKL 122 (129)
Q Consensus 97 C~a~N~ltge~k~S~~~~~L~V~ep~ 122 (129)
|...-...|. ..+. ..-|.|+.+.
T Consensus 102 C~F~tfp~G~-~~~g-t~CLtVt~~~ 125 (189)
T PHA02987 102 CIFNTLLSKN-NEKG-VVCLNVTTDS 125 (189)
T ss_pred EEEEecCCCC-Ccee-EEEEEEEchh
Confidence 9998766662 1233 4467776543
No 162
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.89 E-value=3e-05 Score=45.28 Aligned_cols=63 Identities=17% Similarity=0.244 Sum_probs=43.6
Q ss_pred EEEEeeCCCCCCCceeEeEEeecceeeecccC---CCceEEEccCccEEEeccCCCCCCcceEEEeeccc
Q psy5694 37 AVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTD---TGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKI 103 (129)
Q Consensus 37 AvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~---~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~l 103 (129)
+.|.|.+...+ ...+.|.+++........ ............|.|.+++.+|.| .|.|.+.+..
T Consensus 1 ~~l~C~~~~~~---~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g-~y~C~~~~~~ 66 (74)
T cd00096 1 VTLTCLASGPP---PPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSG-TYTCVASNSA 66 (74)
T ss_pred CEEEEEecCCC---CCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCc-EEEEEEecCc
Confidence 46899998732 357899998754422110 012223345678999999999997 9999999875
No 163
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=97.82 E-value=0.00023 Score=51.08 Aligned_cols=70 Identities=19% Similarity=0.367 Sum_probs=43.0
Q ss_pred EEEeCCeEEEEeeCCCCCCCceeEeEEeecceeee-----cc--------cCCCceEEEccCccEEEeccCCCCCCcceE
Q psy5694 30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIY-----LN--------TDTGGKYVVLSSGDLYVFNATPNDGYKSYR 96 (129)
Q Consensus 30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~-----~~--------~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~ 96 (129)
....|+.+.|.|.+.++.+. ...++|++++.... .. ...++-|.+. ..|.|. .+.+|.|+.|.
T Consensus 49 ~~~~~~~~~L~C~a~g~~P~-~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~dgt~~~~--s~L~v~-~~~~~~g~~yt 124 (139)
T cd05771 49 VSMIEEPQTLICHIAGYYPL-DVQVEWTREPPGDSPPPVSLSNVSFSSHRQHQDGTYSLS--SHLTLE-PGTEDAGATYT 124 (139)
T ss_pred eeecCCcEEEEEEECCCCCC-CeEEEEEECCCCCccceeccCCeEecceEeCCCCCEEEE--EEEEec-CCccCCCCEEE
Confidence 33479999999999886432 15689999873210 00 0123334332 334444 45556667999
Q ss_pred EEeeccc
Q psy5694 97 CRTVNKI 103 (129)
Q Consensus 97 C~a~N~l 103 (129)
|++.|.-
T Consensus 125 C~V~H~~ 131 (139)
T cd05771 125 CRVSHVS 131 (139)
T ss_pred EEEEcCC
Confidence 9999863
No 164
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=97.75 E-value=8.6e-05 Score=52.71 Aligned_cols=69 Identities=14% Similarity=0.297 Sum_probs=43.2
Q ss_pred EEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeeccc-----CCC-ceEEEccCccEEEeccCCCCCCcceEEEeecc
Q psy5694 30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNT-----DTG-GKYVVLSSGDLYVFNATPNDGYKSYRCRTVNK 102 (129)
Q Consensus 30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~-----~~~-~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~ 102 (129)
....|+.+.|.|.+.++-+. ...++|++|+..+.... ..+ +.|.+. -.|.|. ...+|.+..|.|.+.|.
T Consensus 17 ~~~~g~~~tL~C~a~gF~P~-~i~v~W~kng~~~~~~~~~~~p~~d~~ty~~~--S~L~~~-~~~~d~~~~ytC~V~H~ 91 (111)
T cd05772 17 RANPGQSVNFTCSAHGFSPR-DITVKWLKNGNELSAEQPNITPEGDSVSYNVT--STVQVK-LTEDDVHSQVTCEVQHR 91 (111)
T ss_pred ccCCCCCEEEEEEEeeEeCC-CCEEEEEECCEECcccccceeeCCCCCcEEEE--EEEEEE-CccccccCceEEEEEeC
Confidence 44578899999999887443 24689999997763210 011 133331 123333 45566565799999997
No 165
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=97.64 E-value=0.00016 Score=50.28 Aligned_cols=67 Identities=16% Similarity=0.300 Sum_probs=41.6
Q ss_pred EeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEe----ccCCCCCCcceEEEeecc
Q psy5694 32 ILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVF----NATPNDGYKSYRCRTVNK 102 (129)
Q Consensus 32 ~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~----nv~~~D~g~~Y~C~a~N~ 102 (129)
..|+.|+|.|.+.++.+.. ..++|++|+..+.... ....++++|+.+-. .+.+++.|..|+|.+.|.
T Consensus 14 ~~~~~~tL~C~a~gFyP~~-I~v~W~kng~~~~~~~---~~~~~~~~~dty~~~S~L~vt~~~~~~~ysC~V~H~ 84 (96)
T cd07697 14 EKQGQGIYLCLLENFFPDV-IQVHWREGNSPSILGS---QKSEKDKDNDVYSTTSWLTVTKDSLGKKFRCIYKHE 84 (96)
T ss_pred ccCCCEEEEEEEEEEeCCC-eEEEEEECCEECcCCe---EeccEecCCCEEEEEEEEEECchhCCCeEEEEEEEC
Confidence 4578899999998875543 4579999997653210 11123344442221 345544455799999995
No 166
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=97.62 E-value=0.00012 Score=50.65 Aligned_cols=68 Identities=19% Similarity=0.258 Sum_probs=45.2
Q ss_pred EEEeCCeEEEEeeCCCCCCCceeEeEEeecc-e------ee-eccc----------CCCceEEEcc---CccEEEeccCC
Q psy5694 30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-V------NI-YLNT----------DTGGKYVVLS---SGDLYVFNATP 88 (129)
Q Consensus 30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-~------~i-~~~~----------~~~~ry~vlp---sG~L~I~nv~~ 88 (129)
.|-.|++|.|.|.+.... ...+.|.+-. . .| .... ...+||.+.. ...|.|.+++.
T Consensus 2 ~v~~G~~vtL~C~~~~~~---~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~ 78 (104)
T cd05720 2 DAELGQKVELKCEVLNSS---PTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQK 78 (104)
T ss_pred cccCCCeEEEEEEecCCC---CCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCH
Confidence 356899999999875431 2347897743 2 11 1100 0145787643 33599999999
Q ss_pred CCCCcceEEEeec
Q psy5694 89 NDGYKSYRCRTVN 101 (129)
Q Consensus 89 ~D~g~~Y~C~a~N 101 (129)
+|+| .|.|...+
T Consensus 79 sDsg-tY~Ca~~~ 90 (104)
T cd05720 79 ENEG-YYFCSVAS 90 (104)
T ss_pred HHCE-EEEEEEcc
Confidence 9997 99999874
No 167
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=97.60 E-value=0.00023 Score=46.33 Aligned_cols=64 Identities=19% Similarity=0.422 Sum_probs=38.2
Q ss_pred eEEEEeeCCCCCCCceeEeEEeecceeeecc-------cCCCceEEEccCccEEEeccCCCCCCcceEEEeeccc
Q psy5694 36 TAVLRCQIPSYMSEYIIVTSWIQDDVNIYLN-------TDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKI 103 (129)
Q Consensus 36 tAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~-------~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~l 103 (129)
.|.|.|.+.++-+. ...+.|++|+..+... .+.++.|.+. ..|.|.-..+ |.+..|.|++.|.-
T Consensus 1 ~~~L~C~a~gf~P~-~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~--s~L~v~~~~~-~~~~~~tC~V~H~~ 71 (75)
T smart00407 1 KATLVCLVSGFYPP-DITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLS--SYLTVSASTW-ESGDTYTCQVTHEG 71 (75)
T ss_pred CeEEEEEEEeEeCC-CCEEEEEECCEECCCCEEECceEECCCCCEEEE--EEEEEccccC-CCCCEEEEEEEEcC
Confidence 47899999887333 2468999998654211 0123334331 2344433344 44569999999863
No 168
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.54 E-value=0.00014 Score=50.22 Aligned_cols=68 Identities=16% Similarity=0.309 Sum_probs=43.6
Q ss_pred EeCCeEEEEeeCCCCCCCceeEeEEeecceeeeccc-------CCCceEEEccCccEEEeccCCCCCCcceEEEeeccc
Q psy5694 32 ILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNT-------DTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKI 103 (129)
Q Consensus 32 ~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~-------~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~l 103 (129)
..|+.+.|.|.+.++-+.. ..++|++|+..+.... +.++.|.+. ..|.|.--.+ |.|..|.|++.|.-
T Consensus 15 ~~~~~~~L~C~~~gfyP~~-i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~--s~L~v~~~~w-~~~~~~sC~V~H~~ 89 (100)
T cd07699 15 EKSGKATLVCLINDFYPGF-ATVQWKVDGATVSSGVQTSTTEQQSDNTYSLS--SYLTLTKSDW-NKHKVYTCEVTHEG 89 (100)
T ss_pred ccCCCcEEEEEEEeEECCC-CEEEEEECCEECcccEeccccEECCCCCEEEE--EEEEEcHHHh-CCCCeEEEEEEecC
Confidence 3578899999998874433 4589999997663210 123444442 3444444444 34569999999973
No 169
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.53 E-value=0.00021 Score=49.37 Aligned_cols=68 Identities=13% Similarity=0.293 Sum_probs=41.7
Q ss_pred EEeCCeEEEEeeCCCC-CCCceeEeEEeecc-eeeecc-----cCCCceEEEccCccEEEeccCCCCCCcceEEEeecc
Q psy5694 31 VILGNTAVLRCQIPSY-MSEYIIVTSWIQDD-VNIYLN-----TDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNK 102 (129)
Q Consensus 31 V~~GntAvL~C~vp~~-~~~~v~v~sW~~d~-~~i~~~-----~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~ 102 (129)
+..|..|.|.|.+.++ -++ ...++|++|+ ..+... .+.++-|.+. ..|-|..-.| +.|..|.|.+.|.
T Consensus 11 l~~~~~~tLtC~v~gf~yP~-~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~--s~l~v~~~~w-~~g~~ysC~V~H~ 85 (96)
T cd07696 11 LLLTKSVKLTCLVTNLTSPE-GVNVTWTRGSGEPVKASIQPPESHNNATLSVT--STLNVSTDDW-ISGDTFQCKVTHP 85 (96)
T ss_pred hccCCCeEEEEEEeCCCCCC-CcEEEEEECCeEeeeEEecccccCCCCCEEEE--EEEEeCHHHc-cCCCcEEEEEECC
Confidence 4569999999999988 333 2468999986 333111 1223344442 3344443333 2445999999997
No 170
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=97.52 E-value=0.00032 Score=48.38 Aligned_cols=66 Identities=21% Similarity=0.464 Sum_probs=41.6
Q ss_pred EeCCeEEEEeeCCCC-CCCceeEeEEeecceeeecccCCCceEEEccCccEEEe---ccCCCCCCcceEEEeecc
Q psy5694 32 ILGNTAVLRCQIPSY-MSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVF---NATPNDGYKSYRCRTVNK 102 (129)
Q Consensus 32 ~~GntAvL~C~vp~~-~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~---nv~~~D~g~~Y~C~a~N~ 102 (129)
-.|+.++|.|.+.++ |++ ..++|++|+..+. ... .+.+.-..+|..++. .+.+++. ..|.|++.|.
T Consensus 13 ~~g~~~~L~C~a~gFyP~~--i~v~W~~dg~~~~-~~~-~~~~~p~~d~tyq~~s~l~~~~~~~-~~ysC~V~H~ 82 (93)
T cd05770 13 ENGKPNVLNCYVTGFHPPD--IEIRLLKNGVKIP-KVE-QSDLSFSKDWTFYLLKSTEFTPTKG-DEYACRVRHN 82 (93)
T ss_pred cCCCceEEEEEEEEEeCCC--CEEEEEECCEECC-CcE-ECcEEECCCCCEEEEEEEEECCCCC-CeEEEEEEEC
Confidence 347788999999886 444 4579999997763 211 111222233444442 3456665 4999999986
No 171
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=97.52 E-value=0.00038 Score=45.91 Aligned_cols=64 Identities=23% Similarity=0.534 Sum_probs=43.4
Q ss_pred eCCeEEEEeeCCCCCCCceeEeEEeecceeeecc------c-CCCceEEEccCccEEEeccCCCCCCcceEEEeeccc
Q psy5694 33 LGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLN------T-DTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKI 103 (129)
Q Consensus 33 ~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~------~-~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~l 103 (129)
.|+.+.|.|.+.++-+.- ..++|++|+..+... . +.++.|.+. ..|.|. +.+ +..|+|++.|.-
T Consensus 7 ~~~~~~L~C~v~~f~P~~-i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~--s~l~v~---~~~-~~~ysC~V~H~~ 77 (83)
T PF07654_consen 7 LGGSVTLTCLVSGFYPKD-ITVTWLKNGKEVTEGVETTPPPPNSDGTYSVT--SSLTVT---WNS-GDEYSCRVTHES 77 (83)
T ss_dssp STSEEEEEEEEEEEBSST-EEEEEEETTEEETTTEEEEEEEEETTSEEEEE--EEEEEE---TTT-TGGEEEEEEETT
T ss_pred CCCCEEEEEEEEEEECCC-cEEEEEeccceeeeeeeecccccccccceeee--EEEEec---CCC-CCEEEEEEEECC
Confidence 389999999998874443 368999998665211 1 245666654 345555 544 459999999874
No 172
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.43 E-value=0.0003 Score=48.98 Aligned_cols=67 Identities=19% Similarity=0.381 Sum_probs=42.1
Q ss_pred EeCCeEEEEeeCCCCCCCceeEeEEeecceeeecc--------cC--CCceEEEccCccEEEeccCCCCCCcceEEEeec
Q psy5694 32 ILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLN--------TD--TGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVN 101 (129)
Q Consensus 32 ~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~--------~~--~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N 101 (129)
..|+.|.|.|.+.++.+.. ..++|++|+..+... .+ .++-|.+. -.|.| +.+..+.|..|.|++.|
T Consensus 14 ~~~~~~tL~C~a~gFyP~~-i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~--s~L~v-~~~~w~~~~~ytC~V~H 89 (102)
T cd05768 14 SLQETATLTCLVKGFSPSD-IFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLY--SKLTV-SAEDWNAGDVFTCVVGH 89 (102)
T ss_pred CcCCceEEEEEEeeEeCCC-CEEEEEECCEECCcccccccCcccccCCCCeEEEE--EEEEE-cHHHhcCCCcEEEEeEe
Confidence 4588999999999874432 457999998665311 01 12444442 23444 33333445699999999
Q ss_pred c
Q psy5694 102 K 102 (129)
Q Consensus 102 ~ 102 (129)
.
T Consensus 90 ~ 90 (102)
T cd05768 90 E 90 (102)
T ss_pred C
Confidence 7
No 173
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=97.35 E-value=0.00042 Score=49.66 Aligned_cols=68 Identities=13% Similarity=0.189 Sum_probs=44.9
Q ss_pred eCCeEEEEeeCCCCCCCceeEeEEeecceeeeccc--------CCCceEEEccCccEEEeccCCCCCCcceEEEeeccc
Q psy5694 33 LGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNT--------DTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKI 103 (129)
Q Consensus 33 ~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~--------~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~l 103 (129)
.++.+.|.|.+.++-++- ..++|++|+..|.... +.++-|.+. -.|.|.-..+.|.|..|.|++.|.-
T Consensus 17 ~~~~~tL~Cla~gFyP~~-I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~--S~L~v~~~~w~~~~~~ytC~V~H~g 92 (115)
T cd05769 17 NKRKATLVCLATGFYPDH-VSLSWKVNGKEVTDGVATDPQALRENTSTYSIS--SRLRVSATEWFNPRNTFTCIVQFYG 92 (115)
T ss_pred cCCCcEEEEEEEeEeCCC-cEEEEEECCEECCCCcccccceecCCCCeEEEE--EEEEEChHHhccCCCeEEEEEEEeC
Confidence 577899999998875442 4679999997663210 011345442 3456565555565679999999874
No 174
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=97.34 E-value=0.00067 Score=47.86 Aligned_cols=71 Identities=15% Similarity=0.181 Sum_probs=43.3
Q ss_pred EEeCCeEEEEeeCCCC-CCCceeEeEEeecceeeecccCCC---ceEEEccCccEEEeccCCCCCCcceEEEeeccc
Q psy5694 31 VILGNTAVLRCQIPSY-MSEYIIVTSWIQDDVNIYLNTDTG---GKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKI 103 (129)
Q Consensus 31 V~~GntAvL~C~vp~~-~~~~v~v~sW~~d~~~i~~~~~~~---~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~l 103 (129)
...|+.+.++|.+++. |.+ ...+.|++.+..+....-.+ .+=..-++-++.+ .++.+|.|+.|+|+|.=.+
T Consensus 12 l~~G~~vtv~C~v~~v~P~~-~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtf-tptreD~g~~fsC~A~L~l 86 (99)
T cd07689 12 LEEGKPVTVKCEVPDVYPFD-RLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTF-TPTIEDIGKVLVCRAKLHI 86 (99)
T ss_pred ccCCceEEEEEEecCcccCC-ceEEEEecCcceecccccccccccCCCCCcceeEEE-ecchhhCCcEEEEEEEEee
Confidence 4679999999999865 444 35689988776553221000 0000111123333 3469999999999998444
No 175
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=97.31 E-value=0.001 Score=45.56 Aligned_cols=65 Identities=18% Similarity=0.355 Sum_probs=41.1
Q ss_pred EeCCeEEEEeeCCCCCCCceeEeEEeecceeeeccc-------CCCceEEEccCccEEEeccCCCCCCcceEEEeeccc
Q psy5694 32 ILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNT-------DTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKI 103 (129)
Q Consensus 32 ~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~-------~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~l 103 (129)
..|+.+.|.|.+.++-+.- ..++|++|+..+.... +.++.|.+. -.| .+..++ |..|.|++.|.-
T Consensus 12 ~~~~~~~L~C~~~gFyP~~-i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~--s~L---~~~~~~-~~~ysC~V~H~~ 83 (94)
T cd05766 12 SLSHPHLLVCHVWGFYPPE-ITVKWFKNGQEETEGVVSTELIPNGDWTYQIL--VML---ETTPSR-GDTYTCVVEHSS 83 (94)
T ss_pred cCCCCeEEEEEEeeecCCC-CEEEEEECCeecCCCceecceEECCCCcEEEE--EEE---EEcCCC-CCEEEEEEEeCC
Confidence 4589999999999975442 4579999997764310 112334332 113 234444 459999999973
No 176
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=97.26 E-value=0.0013 Score=44.37 Aligned_cols=67 Identities=18% Similarity=0.428 Sum_probs=39.6
Q ss_pred CCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEE---EeccCCCCCCcceEEEeeccc
Q psy5694 34 GNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLY---VFNATPNDGYKSYRCRTVNKI 103 (129)
Q Consensus 34 GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~---I~nv~~~D~g~~Y~C~a~N~l 103 (129)
|+.+.|.|.+.++.+.- ..++|++++..+.... ....+....+|... .-.|..+|. +.|.|++.|.-
T Consensus 14 ~~~~~L~C~a~gF~P~~-i~v~W~~~g~~~~~~~-~~~~~~~~~d~ty~~~s~l~v~~~~~-~~ytC~V~H~~ 83 (93)
T cd07698 14 DGSLTLSCHATGFYPRD-IEVTWLRDGEDSVDDV-ESGEILPNGDGTYQLWVTLEVPPEDK-ARYSCRVEHSG 83 (93)
T ss_pred CCcEEEEEEEEEEeCCC-cEEEEEECCEECcccc-cccceEECCCCeEEEEEEEEECCCCC-CEEEEEEEeCC
Confidence 78899999999864331 3689999985332110 11222222333322 233455565 59999999873
No 177
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=97.23 E-value=0.00088 Score=46.09 Aligned_cols=66 Identities=23% Similarity=0.411 Sum_probs=40.5
Q ss_pred eCCeEEEEeeCCCCCCCceeEeEEeecceeeecc-------cCCCceEEEccCccEEEeccCCCCCCcceEEEeecc
Q psy5694 33 LGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLN-------TDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNK 102 (129)
Q Consensus 33 ~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~-------~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~ 102 (129)
.++.+.|.|.+.++-+.- ..++|++|+..+... .+.++.|.+. -.|.|..-.+. .|..|.|++.|.
T Consensus 13 ~~~~~~L~C~a~gFyP~~-I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~--S~L~v~~~~w~-~~~~ytC~V~H~ 85 (94)
T cd05847 13 TSETIQLLCLISGYTPGT-IEVEWLVDGQVATLVAASTAPQKEEGSTFSTT--SELNVTQEDWK-SGKTYTCKVTHQ 85 (94)
T ss_pred CCCCEEEEEEEEeEECCC-CEEEEEECCEECcCceeecccEECCCCcEEEE--EEEEEchHHhc-CCCeEEEEEEEC
Confidence 467799999999874442 457999998665211 1123344331 23444433333 446999999987
No 178
>KOG1480|consensus
Probab=97.05 E-value=0.00015 Score=66.37 Aligned_cols=81 Identities=20% Similarity=0.314 Sum_probs=66.8
Q ss_pred EEeeeeeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcce
Q psy5694 16 VVKQKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSY 95 (129)
Q Consensus 16 Vv~q~y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y 95 (129)
+++-.|+-.+.-. .|-.+.+..|.|+.|...+ ...+.|++++..+.| +........+.|.|.-+..+|.| .|
T Consensus 127 y~rk~f~~~p~~q-~V~~~s~~~l~cr~pe~~p--aae~~w~k~e~~~~p----d~n~~~~~d~~li~~~arlsd~~-ny 198 (909)
T KOG1480|consen 127 YLRKHFEQSPVGQ-EVQEETTLQLPCRPPEGDP--KAEVEWLKNEVVIDP----DANVIRASDHNLIISQARLSDSG-NY 198 (909)
T ss_pred HHHHhhccChhhh-eecccccccccccCcccch--hhhhhccccCCCCCc----cccchhhhcCCccccchhhhhcc-cc
Confidence 3445567777777 8899999999999987654 467899999977754 56676778999999999999998 99
Q ss_pred EEEeecccC
Q psy5694 96 RCRTVNKIT 104 (129)
Q Consensus 96 ~C~a~N~lt 104 (129)
+|+|.|...
T Consensus 199 tc~a~ni~~ 207 (909)
T KOG1480|consen 199 TCEATNIVA 207 (909)
T ss_pred eeeeehhhc
Confidence 999999973
No 179
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=97.05 E-value=0.00055 Score=49.12 Aligned_cols=38 Identities=18% Similarity=0.174 Sum_probs=29.0
Q ss_pred cEEEeccCCCCCCcceEEEeecccCCeEEecccceEEEEecCC
Q psy5694 80 DLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGKL 122 (129)
Q Consensus 80 ~L~I~nv~~~D~g~~Y~C~a~N~ltge~k~S~~~~~L~V~ep~ 122 (129)
.|.|.||+.+|+| .|.|.+.|..... +. ..+|.|..|+
T Consensus 2 sL~i~~v~~~D~G-~Y~C~~~~~~~~~---~~-~~~l~v~~~P 39 (139)
T cd05771 2 SLTLPGLTVHDEG-TYICSVSTPPHQA---QQ-IIQLSVSEPP 39 (139)
T ss_pred eEEECCCCHHHCE-EEEEEEEccCcce---ee-EEEEEEecCC
Confidence 5899999999997 9999999875332 33 4577777654
No 180
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=97.00 E-value=0.0031 Score=41.51 Aligned_cols=68 Identities=19% Similarity=0.327 Sum_probs=44.2
Q ss_pred CCeEEEEeeCCCCCCCceeEeEEeecceeeecc------cCCCceEEEccCccEEEeccCCCCCCcceEEEeecccCCe
Q psy5694 34 GNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLN------TDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGE 106 (129)
Q Consensus 34 GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~------~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~ltge 106 (129)
|..+.|.|...++-+ .+.++|..++..+... ...++.|.+. -.|.+ .++++|.++.++|++.|.....
T Consensus 14 ~~~~~~~C~s~~~~P--~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~--S~l~~-~~~~~~~~~~~~C~~~~~~~~~ 87 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYP--PPQITWYLDGGPVVASNTTQSSSPDNGLFTVS--STLTL-TPTREDHGKTLTCRASHPALSQ 87 (89)
T ss_dssp TEEEEEEEEEEEEBS---EEEEEEETTCEECEEEEEEEEETTTTTEEEE--EEEEE-ETTGGGTTEEEEEEEEETTCCE
T ss_pred ceEEEEEEEeCCeEC--CeEEEEEECCCceeeeeeeeeeccCCCcceEE--EEEEE-EcChHHCCeEEEEEEECCccCC
Confidence 569999998766543 3789999998554100 1123334332 24554 4677888899999999986443
No 181
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=96.99 E-value=0.0022 Score=44.23 Aligned_cols=63 Identities=16% Similarity=0.370 Sum_probs=39.6
Q ss_pred eCCeEEEEeeCCCCCCCceeEeEEeecceeeecc-------cCCCceEEEccCccEEEeccCCCCCCcceEEEeecc
Q psy5694 33 LGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLN-------TDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNK 102 (129)
Q Consensus 33 ~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~-------~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~ 102 (129)
.|..+.|.|.+.++-+.- ..++|++|+..+... ...|+.|.+. -.|.|. .++ |..|.|++.|.
T Consensus 14 ~~~~~tL~C~a~gFyP~~-I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~--s~L~v~---~~~-~~~ytC~V~H~ 83 (94)
T cd05767 14 LGEPNTLICFVDNFFPPV-LNVTWLKNGVPVTDGVSETRYYPRQDLSFQKF--SYLNFT---PEE-GDIYSCIVEHW 83 (94)
T ss_pred CCCCeEEEEEEEEEECCc-CEEEEEECCeEccCceEEeeeEeCCCCcEEEE--EEEEEE---CCC-CCeEEEEEEeC
Confidence 366689999999874432 457999999766321 0223445442 224433 334 45999999986
No 182
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.97 E-value=0.0023 Score=44.90 Aligned_cols=69 Identities=20% Similarity=0.336 Sum_probs=44.6
Q ss_pred EEeCCeEEEEeeCCCCC-CCceeEeEEeeccee--e--ecccCCCceEEEccCccEEEeccCCCCCCcceEEEeeccc
Q psy5694 31 VILGNTAVLRCQIPSYM-SEYIIVTSWIQDDVN--I--YLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKI 103 (129)
Q Consensus 31 V~~GntAvL~C~vp~~~-~~~v~v~sW~~d~~~--i--~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~l 103 (129)
...|..|.|.|.+.++- ++.+ .++|.+|+.. . .+..+.++-|.+. ..|-|.--. ...|..|.|++.|.-
T Consensus 16 l~~~~~atLtClV~~f~~P~~i-~V~W~~~g~~~~~~t~~~~~~dgTys~~--S~L~v~~~~-W~~g~~ytC~V~H~~ 89 (99)
T cd04986 16 LLLGSSASLTCTLSGLRDPEGA-VFTWTPSGGKEAVQTSAESDQCGCYSVS--SVLPGCAEE-WNKGEPFACTVTHPE 89 (99)
T ss_pred hCcCCccEEEEEEeccCCCCCe-EEEEEECCccCcEEcCcccCCCCCEEEE--EEEEeCHHH-hcCCCeEEEEEECCC
Confidence 34788999999998865 4434 5899999732 1 1112335666653 556655323 344568999999973
No 183
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.96 E-value=0.0014 Score=45.12 Aligned_cols=67 Identities=18% Similarity=0.348 Sum_probs=40.4
Q ss_pred EeCCeEEEEeeCCCCCCCceeEeEEeecceeeec-----c-cCCCceEEEccCccEEEeccCCCCCCcceEEEeecc
Q psy5694 32 ILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYL-----N-TDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNK 102 (129)
Q Consensus 32 ~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~-----~-~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~ 102 (129)
+.++.+.|.|.+.++.+. ...++|++|+..... . ...++.|.+. -.|.|..-.+ +.+..|.|++.|.
T Consensus 14 ~~~~~~~L~C~a~gFyP~-~i~vtW~k~g~~~~~~~~~~~~~~~dgty~~~--s~L~v~~~~w-~~~~~ytC~V~H~ 86 (95)
T cd04985 14 SSSDSVTLGCLATGFLPE-PVTFTWNSGSNSTSGVKTYPAVLQSGGLYTAS--SQLTVPASEW-KGKESFYCKVEHP 86 (95)
T ss_pred cCCCcEEEEEEEeeEECC-CcEEEEeECCEECCCcEECCCEeCCCCCEEEE--EEEEEeHHHc-CCCCcEEEEEEeC
Confidence 357789999999987554 245799999965210 0 0013445442 2233333333 2446999999996
No 184
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=96.57 E-value=0.015 Score=40.23 Aligned_cols=63 Identities=17% Similarity=0.236 Sum_probs=39.3
Q ss_pred eEEEEeeCCCCCCCceeEeEEeecc-eeee--cccCCCceEEEccCccEEEeccCCCCCCcceEEEeeccc
Q psy5694 36 TAVLRCQIPSYMSEYIIVTSWIQDD-VNIY--LNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKI 103 (129)
Q Consensus 36 tAvL~C~vp~~~~~~v~v~sW~~d~-~~i~--~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~l 103 (129)
..++.|...++-+ .+.++|+++- ..+. .....+++|.+. ..|.+ -.+.+|.|+.|+|++.|.-
T Consensus 17 ~~va~C~s~~gkP--aa~IsW~~~~~g~~~~~~~~~~~gt~tv~--S~l~~-~P~~~d~Gk~ltC~v~h~a 82 (95)
T cd07703 17 VPVAKCVSANGRP--PARISWSSTLGGNANTTSKENGDGTVTVT--SEYSL-VPTPEANGKEVTCKVEHET 82 (95)
T ss_pred cEEEEEEcCCCCC--CcEEEEEcCCCCCeeEEEEeCCCCCEEEE--EEEEE-ecCHHHCCCEEEEEEeCcc
Confidence 4689999876633 3789999983 1110 001123444443 23333 4677888899999999974
No 185
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=96.38 E-value=0.013 Score=40.42 Aligned_cols=63 Identities=13% Similarity=0.141 Sum_probs=38.1
Q ss_pred eEEEEeeCCCCCCCceeEeEEeecc-eeee--cccCCCceEEEccCccEEEeccCCCCCCcceEEEeeccc
Q psy5694 36 TAVLRCQIPSYMSEYIIVTSWIQDD-VNIY--LNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKI 103 (129)
Q Consensus 36 tAvL~C~vp~~~~~~v~v~sW~~d~-~~i~--~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~l 103 (129)
..++.|...++-+ .+.++|.++- ..+. .....++.|.+. -.|.+ ..+.+|.|+.|+|++.|..
T Consensus 17 ~~va~C~s~~gkP--~a~ItW~~~~~~~~~~~~~~~~~g~~tv~--S~l~~-~p~~~d~G~~~tC~v~h~~ 82 (95)
T cd05719 17 VTVATCVSANGKP--PATISWETTLGGEAETQSKENPNGTVTVT--SEYRL-VPSREANGKELTCVVSHPT 82 (95)
T ss_pred cEEEEEECCCCcC--CCEEEEEeCCCCcceeEeecCCCCCEEEE--EEEEE-ecCHHHCCCEEEEEEeCcc
Confidence 4578999965533 3789999972 1110 001112233332 23444 4678888999999999975
No 186
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=96.15 E-value=0.016 Score=37.93 Aligned_cols=52 Identities=19% Similarity=0.388 Sum_probs=33.9
Q ss_pred EeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecc
Q psy5694 32 ILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNK 102 (129)
Q Consensus 32 ~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~ 102 (129)
+.|.+++|.|-.- .+ .+.|.+++..+. ..+. .++..|-. ++.| .|+|.+.+.
T Consensus 5 isGTtVtlTCP~~---~~---~i~W~~n~~~~~----g~~~-------~~~~~~~~-e~~G-~Y~C~~~~~ 56 (65)
T cd07692 5 ISGTTVTVTCPLS---GD---DIKWKKNDQVSQ----GSDE-------KYLSLNHF-SSSG-YYHCTADNA 56 (65)
T ss_pred EeccEEEEECCCC---CC---CceEEeCCccCC----CCCc-------eEEeeccC-CCCc-eEEEEeCCC
Confidence 6799999999632 12 289999985442 1111 23334545 7776 999999754
No 187
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=96.11 E-value=0.0072 Score=49.38 Aligned_cols=47 Identities=17% Similarity=0.176 Sum_probs=39.8
Q ss_pred eEeEEeecc-eeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeeccc
Q psy5694 52 IVTSWIQDD-VNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKI 103 (129)
Q Consensus 52 ~v~sW~~d~-~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~l 103 (129)
|.-.|...+ ..|. ..+++.|.++|.|.+.|.++++.| .|.|....+.
T Consensus 13 P~y~W~GP~g~~l~----gn~~~nIT~TG~L~~~~F~esmSG-~YTCtLsYk~ 60 (271)
T PF07354_consen 13 PTYLWTGPNGKPLS----GNSYVNITETGKLMFKNFQESMSG-SYTCTLSYKP 60 (271)
T ss_pred CceEEECCCCcccC----CCCeEEEccCceEEeeccccccCC-ceEEEEEEEe
Confidence 457999976 6663 346888999999999999999998 9999999887
No 188
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=95.78 E-value=0.033 Score=38.92 Aligned_cols=70 Identities=13% Similarity=0.104 Sum_probs=45.4
Q ss_pred EEEeCCeEEE-EeeCCCCCCCceeEeEEeecc-eee--ecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecccC
Q psy5694 30 NVILGNTAVL-RCQIPSYMSEYIIVTSWIQDD-VNI--YLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKIT 104 (129)
Q Consensus 30 ~V~~GntAvL-~C~vp~~~~~~v~v~sW~~d~-~~i--~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~lt 104 (129)
.+..||...+ .|....+-+ .+.++|..+. ... ......++.+.+.. .|.+ -...+|.|+.+.|++.|.-.
T Consensus 12 ~~~~g~~~~vA~C~sa~gkP--aa~IsW~~~~~G~~~~~~~~~~ngT~TV~S--~~~l-~p~r~d~G~~vtC~V~H~al 85 (97)
T cd07704 12 LIDGGNGTTLAACCAAEGRP--AADVTWETNVYGTSESHSQEHPNGTTTVTS--EYIW-VPSRHANGHPLTCVVSHPAL 85 (97)
T ss_pred EeecCcceeEEEEEccCCcc--CCEeEEeCCCCCccceeeecCCCCCEEEEE--EEEE-EeCHHHCCcEEEEEEeCccc
Confidence 4567888888 999877643 3789999873 111 00112345555542 4444 34666777899999999853
No 189
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=94.80 E-value=0.065 Score=45.20 Aligned_cols=65 Identities=12% Similarity=0.222 Sum_probs=37.2
Q ss_pred eEEEEeeCCCCCCCceeEeEEeec---------c---eeeeccc--CCCc---eEEEccCcc---EEEe---ccCCCCCC
Q psy5694 36 TAVLRCQIPSYMSEYIIVTSWIQD---------D---VNIYLNT--DTGG---KYVVLSSGD---LYVF---NATPNDGY 92 (129)
Q Consensus 36 tAvL~C~vp~~~~~~v~v~sW~~d---------~---~~i~~~~--~~~~---ry~vlpsG~---L~I~---nv~~~D~g 92 (129)
.+.|+|++.++-|.- ..++|++| + ..+.++. +.++ -..++|+|+ .++. .|..+|..
T Consensus 216 ~~tL~C~A~GFYP~~-I~v~W~kd~~~~~~~~~g~e~~e~~~n~d~e~ge~~~~~~~~pn~DggTfQ~~~~v~v~~~~~~ 294 (338)
T PHA02865 216 NTTLFCTFDSHYPSS-VAAKWYNSEDFAPEYRYGRYYPELGRDTDYEPGEPGFPTNTKKDNDKNTFSSTPSVRVPTDMSN 294 (338)
T ss_pred CceEEEEEEeEeCCc-cEEEEEecccccccccCCccccccccCCCccccccccccceeeCCCCCeeEEEEEEEeCCCCCC
Confidence 468999999874332 45799999 4 2222210 0000 122444333 3332 45566664
Q ss_pred cceEEEeecc
Q psy5694 93 KSYRCRTVNK 102 (129)
Q Consensus 93 ~~Y~C~a~N~ 102 (129)
.|.|++.|.
T Consensus 295 -~Y~C~V~Hs 303 (338)
T PHA02865 295 -QIVCVVFHS 303 (338)
T ss_pred -CcEEEEEeC
Confidence 899999986
No 190
>PHA02633 hypothetical protein; Provisional
Probab=94.69 E-value=0.032 Score=36.38 Aligned_cols=40 Identities=25% Similarity=0.349 Sum_probs=29.1
Q ss_pred cCccEEEeccCCCCCCcceEEEeecccCCeEEecccceEEEEecC
Q psy5694 77 SSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGK 121 (129)
Q Consensus 77 psG~L~I~nv~~~D~g~~Y~C~a~N~ltge~k~S~~~~~L~V~ep 121 (129)
.+++|.|-++..+|+| .|.|+.+|.- --..+ ...|+|.+.
T Consensus 16 ~~~nLwilpa~~sDSG-iYiC~~rn~t--~c~~~--si~l~V~~~ 55 (63)
T PHA02633 16 NCNNMLILNPTQSDSG-IYMCITKNET--YSDMM--KFDLCICLR 55 (63)
T ss_pred ccccEEEeccccccCc-EEEEEEcCCC--eeEEE--EEEEEEeec
Confidence 5678999999999998 9999999862 22222 346666543
No 191
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=94.56 E-value=0.22 Score=34.41 Aligned_cols=63 Identities=17% Similarity=0.253 Sum_probs=45.5
Q ss_pred eeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEE-ccCccEEEeccCCCCCCcceEEEee
Q psy5694 27 YEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVV-LSSGDLYVFNATPNDGYKSYRCRTV 100 (129)
Q Consensus 27 ~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~v-lpsG~L~I~nv~~~D~g~~Y~C~a~ 100 (129)
+. .++.|++..|.|..|+...+ .+.+.|..-+..+ .... -....|.+.+++..|.| ...|...
T Consensus 8 ~~-~lL~G~sLtLtl~~~s~s~p-~~~i~w~~P~n~~--------~~~~~~~~ktL~~~qv~~qdSG-~WtC~V~ 71 (88)
T cd07694 8 SD-HVLSGTNLTLTLHGSSNSLP-AFKVEWRGPGNKS--------KQILNQDKKTLNLVQLGPNDSG-TWDCIVS 71 (88)
T ss_pred CC-eeecCCcEEEEEecCCCCCC-CccEEEeCCCCcc--------ceeccCCccEEEeceeCcccCC-EEEEEEE
Confidence 35 78999999999999775321 2478998854111 1111 23456999999999998 9999996
No 192
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=92.50 E-value=0.3 Score=35.98 Aligned_cols=72 Identities=17% Similarity=0.308 Sum_probs=41.4
Q ss_pred EEEeCCeEEEEeeCCCCCCC--ceeEeEEeecceeeecccCCCceEE----------EccCcc--EEEeccCCCCCCcce
Q psy5694 30 NVILGNTAVLRCQIPSYMSE--YIIVTSWIQDDVNIYLNTDTGGKYV----------VLSSGD--LYVFNATPNDGYKSY 95 (129)
Q Consensus 30 ~V~~GntAvL~C~vp~~~~~--~v~v~sW~~d~~~i~~~~~~~~ry~----------vlpsG~--L~I~nv~~~D~g~~Y 95 (129)
+..=.++++|+|.+...... ..-.+.|..++..|........+.. -+-.|+ |.+...+.- .| .|
T Consensus 23 ~t~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~G-nY 100 (130)
T PF08204_consen 23 YTVCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EG-NY 100 (130)
T ss_dssp E-TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--E-EE
T ss_pred EEecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-cc-ce
Confidence 56778999999999642211 1245899998866643312222221 134566 888886666 44 99
Q ss_pred EEEeeccc
Q psy5694 96 RCRTVNKI 103 (129)
Q Consensus 96 ~C~a~N~l 103 (129)
+|-+.+..
T Consensus 101 TCeVt~~~ 108 (130)
T PF08204_consen 101 TCEVTELS 108 (130)
T ss_dssp EEEEEETT
T ss_pred EEEEEecC
Confidence 99998654
No 193
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=92.24 E-value=0.58 Score=33.81 Aligned_cols=68 Identities=13% Similarity=0.180 Sum_probs=44.2
Q ss_pred EEEeCCeEEEEeeCCC--CCCCceeEeEEeecc-ee---eecc-------cCCCceEEEc--cCc---cEEEeccCCCCC
Q psy5694 30 NVILGNTAVLRCQIPS--YMSEYIIVTSWIQDD-VN---IYLN-------TDTGGKYVVL--SSG---DLYVFNATPNDG 91 (129)
Q Consensus 30 ~V~~GntAvL~C~vp~--~~~~~v~v~sW~~d~-~~---i~~~-------~~~~~ry~vl--psG---~L~I~nv~~~D~ 91 (129)
.|..|+++.|.|...+ ...++ .++|+|.. .. +... ....+|+.+. .+. .|.|.+++.+|.
T Consensus 9 lv~p~~sv~LsC~~sg~~~s~e~--~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~DT 86 (115)
T cd05721 9 LASSNGAASLVCEYTYNGFSKEF--RASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRANQT 86 (115)
T ss_pred EEcCCCCEEEEEEecCCccccEE--EEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHHHC
Confidence 7788999999999844 34333 57898853 11 1110 0123455443 222 399999999999
Q ss_pred CcceEEEee
Q psy5694 92 YKSYRCRTV 100 (129)
Q Consensus 92 g~~Y~C~a~ 100 (129)
. .|.|.-.
T Consensus 87 a-~Y~Ca~e 94 (115)
T cd05721 87 D-IYFCKIE 94 (115)
T ss_pred e-EEEEEee
Confidence 6 9999653
No 194
>KOG4597|consensus
Probab=92.24 E-value=0.28 Score=43.40 Aligned_cols=76 Identities=21% Similarity=0.120 Sum_probs=56.9
Q ss_pred EEEeCCeEEEEeeCCCCCCCceeEeEEee---ccee-eecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecccCC
Q psy5694 30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQ---DDVN-IYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITG 105 (129)
Q Consensus 30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~---d~~~-i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~ltg 105 (129)
.|-.|.++-+.|-+-+.+. +++.|.| ++.+ +-+....-++-.+...+.|.|-|..++|+| -|.|.++|.. |
T Consensus 207 ~vg~wetcS~tCg~~G~q~---r~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~~a~-w~tCs~rcg~-g 281 (560)
T KOG4597|consen 207 FVGDWETCSSTCGVQGRQY---RVVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQADAG-WYTCSARCGA-G 281 (560)
T ss_pred hcccchhhcccccccCCcC---ceeeeehhhccccceeecCccccCCcceeeeeeEEEcchhhcCCC-ceeecccccc-c
Confidence 4677899999999877663 6789977 3322 211112346667778999999999999998 9999999987 6
Q ss_pred eEEec
Q psy5694 106 ESQAS 110 (129)
Q Consensus 106 e~k~S 110 (129)
-.+.+
T Consensus 282 ~~~rd 286 (560)
T KOG4597|consen 282 FLRRD 286 (560)
T ss_pred eeecc
Confidence 65554
No 195
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=90.65 E-value=0.44 Score=31.59 Aligned_cols=49 Identities=16% Similarity=0.307 Sum_probs=29.7
Q ss_pred CCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeec
Q psy5694 34 GNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVN 101 (129)
Q Consensus 34 GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N 101 (129)
...++|.|..- ..++|+++...+.. . +-.|-+..+. .|..|.|+|.+.+
T Consensus 6 ~~~V~L~C~~~-------tsi~W~kG~~~~~~----~-------~~tlnLGs~~-~DPRG~Y~C~~s~ 54 (69)
T cd07691 6 EGKVFLKCNGA-------TNITWKKGKEILEV----S-------NTLLDLGSRI-NDPRGTYSCKESE 54 (69)
T ss_pred CceEEEEecCC-------CcEEEecCcccccc----c-------ccEEeccCcc-cCCCcceEecCcc
Confidence 35688999851 34899994333311 1 2233333333 4666699999987
No 196
>PHA02982 hypothetical protein; Provisional
Probab=89.34 E-value=1.2 Score=35.90 Aligned_cols=70 Identities=16% Similarity=0.305 Sum_probs=49.3
Q ss_pred EEEeCCeEEEEeeCCCCCCCceeEeEEeecc-eeeecccC----C----------CceEEEcc---CccEEEeccCCCCC
Q psy5694 30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-VNIYLNTD----T----------GGKYVVLS---SGDLYVFNATPNDG 91 (129)
Q Consensus 30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-~~i~~~~~----~----------~~ry~vlp---sG~L~I~nv~~~D~ 91 (129)
.+..|+.+.|.|..|.. +-+...-|.+++ .-|..... . ..+|.+.- +-.|.|.++..+..
T Consensus 35 ~a~vd~~V~L~C~~~~~--~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N~ 112 (251)
T PHA02982 35 NATVDQEVKLQCLFKDA--DEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQNL 112 (251)
T ss_pred hccCCCcEEEEecCCCc--chhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCcccC
Confidence 56779999999998763 336677999977 44431100 0 23454433 44599999999999
Q ss_pred CcceEEEeecc
Q psy5694 92 YKSYRCRTVNK 102 (129)
Q Consensus 92 g~~Y~C~a~N~ 102 (129)
| =|.|.++..
T Consensus 113 G-CYtc~~ks~ 122 (251)
T PHA02982 113 G-CFTCEAKDA 122 (251)
T ss_pred C-ceEEEEecC
Confidence 7 999999864
No 197
>KOG3515|consensus
Probab=89.03 E-value=0.32 Score=44.87 Aligned_cols=53 Identities=23% Similarity=0.178 Sum_probs=44.8
Q ss_pred eeEeEEeecceeeecccCCCceEEEccCccEE-EeccCCCCCCcceEEEeecccCCe
Q psy5694 51 IIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLY-VFNATPNDGYKSYRCRTVNKITGE 106 (129)
Q Consensus 51 v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~-I~nv~~~D~g~~Y~C~a~N~ltge 106 (129)
.+.+.|.++...+.+. .++++.+.++|-|. +.||+..|.| .|.|.|.|..+|.
T Consensus 431 ~~~~~w~~~~~~~~~~--~g~~~~v~~~~~~~s~~~v~~~d~g-~y~~tatns~gg~ 484 (741)
T KOG3515|consen 431 ERTFYWTFRLYKLSQV--DGGVVRVGAGAGLGSGVNVSRSDGG-SYGLTATNSPGGA 484 (741)
T ss_pred ccchhheecceecccc--cCceEEeeccccccccceeeeccCC-cceeeeccCCCce
Confidence 3678999998777653 57788898888888 9999999998 9999999998665
No 198
>PHA03052 Hypothetical protein; Provisional
Probab=88.97 E-value=1.4 Score=29.23 Aligned_cols=48 Identities=15% Similarity=0.252 Sum_probs=33.8
Q ss_pred eeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecc-cCCCceEEE
Q psy5694 28 EHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLN-TDTGGKYVV 75 (129)
Q Consensus 28 ~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~-~~~~~ry~v 75 (129)
.+.|-.|..+.|.|++.=.++-..+.+-|.-++..+... ...++|..+
T Consensus 6 ~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~e~~d~~g~gRI~~ 54 (69)
T PHA03052 6 GIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYYEEDDDDGDGRISI 54 (69)
T ss_pred cEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEEeccccCCCcceEe
Confidence 347889999999999965555557889999999776321 134555543
No 199
>KOG3515|consensus
Probab=85.19 E-value=1.2 Score=41.26 Aligned_cols=67 Identities=24% Similarity=0.457 Sum_probs=48.9
Q ss_pred EEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecccCCe
Q psy5694 30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGE 106 (129)
Q Consensus 30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~ltge 106 (129)
.+..|..+-|.|.+.+.+++ +.+.|.+++.-+. +||....+--|.-.+. +.|.++.|.|+|.|.. |+
T Consensus 18 ~~~~g~~v~l~C~v~~~pp~--~~~eW~h~~~~~~------~~~~~~~~~~~~~~~~-~~~~~~~~~c~a~ns~-~~ 84 (741)
T KOG3515|consen 18 GLRLGEDVPLPCRVNSNPPE--IDVEWYHSTSGEH------GRYATIADPTLVTTGD-VRDTVAELNCRAFNSV-GM 84 (741)
T ss_pred hhccCCcceeeeecCCCCCC--cceEEEecCcccc------cccccccCCceeeecc-hhhhhhhhhhhhcccc-cC
Confidence 56789999999999998875 5789999873321 5666655555555544 4566679999999984 55
No 200
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=74.59 E-value=13 Score=25.31 Aligned_cols=69 Identities=19% Similarity=0.237 Sum_probs=43.4
Q ss_pred eeeeeeEEEeCCeEEEEeeCCCCCC--CceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCC-cceEEE
Q psy5694 24 NVNYEHNVILGNTAVLRCQIPSYMS--EYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGY-KSYRCR 98 (129)
Q Consensus 24 ~v~~~~~V~~GntAvL~C~vp~~~~--~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g-~~Y~C~ 98 (129)
.++.. .|-.|.++...|.+...-. +....+-|.-|...| .+++|..++++...|.=......+ ..|-|.
T Consensus 9 ~p~~p-vv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~i-----P~~qy~~in~~~SsVT~~~~~~~~~~L~cC~ 80 (89)
T PF06328_consen 9 SPPSP-VVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKI-----PGSQYRVINDTVSSVTLPNLNPTGATLFCCK 80 (89)
T ss_dssp ECSSS-EEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCES-----TCGCEEEESTTEEEEEESS--SSEEEEEEEE
T ss_pred ecCCC-EEeCCCCEEEEEEEECCCCCCcccceEEEEECCEEC-----ChhHcceeCCeEEEEEEccCCCCCceEEEEE
Confidence 34555 7889999999999964422 334567898887655 358999999887554433333333 366665
No 201
>PHA03112 IL-18 binding protein; Provisional
Probab=73.29 E-value=27 Score=26.17 Aligned_cols=71 Identities=18% Similarity=0.257 Sum_probs=43.4
Q ss_pred EeCCeEEEEeeCCCCCCCceeEeEEeecc-eeeeccc---CCCce---------EEEccCccEEEeccCCCCCCcceEEE
Q psy5694 32 ILGNTAVLRCQIPSYMSEYIIVTSWIQDD-VNIYLNT---DTGGK---------YVVLSSGDLYVFNATPNDGYKSYRCR 98 (129)
Q Consensus 32 ~~GntAvL~C~vp~~~~~~v~v~sW~~d~-~~i~~~~---~~~~r---------y~vlpsG~L~I~nv~~~D~g~~Y~C~ 98 (129)
-+|++.+|+|..-++.+.| .-+.|+..+ ..+.... ..++| .--.+.-+|++.+++.+=......|+
T Consensus 36 k~~~~vvL~C~gcs~fp~f-S~lYWl~gn~~s~~d~~~~~hy~e~~~~~~~~~~~~~~~~~~l~l~~vt~~~~~T~~TCV 114 (141)
T PHA03112 36 KETEKVVLECRGCSYFPKF-SYVYWLIGNNKSDVDQKPIEHYGEGIYESEKPRTCDNEPRTDLIVYNVTDEMKFTKLTCV 114 (141)
T ss_pred CCCCEEEEEEECccCCCCc-eEEEEEcCCCccchhccccccccccccCCccccccCCcceeEEEEEecCCcceecceEEE
Confidence 3699999999998776654 457999654 2221000 00111 11245557888888876333488888
Q ss_pred eeccc
Q psy5694 99 TVNKI 103 (129)
Q Consensus 99 a~N~l 103 (129)
-.+..
T Consensus 115 L~D~~ 119 (141)
T PHA03112 115 LMDLD 119 (141)
T ss_pred EecCC
Confidence 87763
No 202
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=72.97 E-value=16 Score=32.06 Aligned_cols=64 Identities=16% Similarity=0.280 Sum_probs=37.5
Q ss_pred EEEeCCeE-EEEeeCCCC-CCCceeEeEE-eecc-eee--e-ccc---------CCCceEEEccCccEEEeccCCCCCCc
Q psy5694 30 NVILGNTA-VLRCQIPSY-MSEYIIVTSW-IQDD-VNI--Y-LNT---------DTGGKYVVLSSGDLYVFNATPNDGYK 93 (129)
Q Consensus 30 ~V~~GntA-vL~C~vp~~-~~~~v~v~sW-~~d~-~~i--~-~~~---------~~~~ry~vlpsG~L~I~nv~~~D~g~ 93 (129)
.+-.|.+. .|.|.+|+. .+|-+.++.= .... ..+ . ++. +.+..| ...+.|++.+|+|
T Consensus 22 i~~~gd~~~nlTCiLP~~~~ADkvIviKGn~~~nt~ki~~sI~Nag~dn~CyCGd~dkeY------sf~~~Nvs~sdEG- 94 (500)
T PHA02914 22 FLRNEDEELALTCILPAAKMADKVVLIKGNDMNNTKEIESSINNAGEDNVCYCGDPDKEY------SFIEENIGEHEDG- 94 (500)
T ss_pred EEecCceEEeeEEEcCCCccccEEEEEeccCCCCeeEEEEeccCCCCCCccccCCCccee------EEEecCcccccCC-
Confidence 55567777 899999986 4454333321 1111 112 1 100 112233 4678889999998
Q ss_pred ceEEEee
Q psy5694 94 SYRCRTV 100 (129)
Q Consensus 94 ~Y~C~a~ 100 (129)
.|+|+..
T Consensus 95 rYrCIFY 101 (500)
T PHA02914 95 DFKCIFY 101 (500)
T ss_pred cEEEEEE
Confidence 9999986
No 203
>KOG3611|consensus
Probab=68.14 E-value=7 Score=36.30 Aligned_cols=67 Identities=19% Similarity=0.287 Sum_probs=42.6
Q ss_pred EEeCCeEEEEeeCCCCCCCceeEeEEee--cceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecc
Q psy5694 31 VILGNTAVLRCQIPSYMSEYIIVTSWIQ--DDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNK 102 (129)
Q Consensus 31 V~~GntAvL~C~vp~~~~~~v~v~sW~~--d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~ 102 (129)
-+.+++.+|.|..-+.. ..+.|.. .+.......-.+.+....-.|.|.+..++..|.| .|.|.+.+.
T Consensus 566 ~~~~~~~~l~c~~~~~~----a~~~w~~~~~~~~~~~~~~~~~~~~~~~~G~lll~~~q~~~~G-~y~c~~~e~ 634 (737)
T KOG3611|consen 566 PVLAGSEVLRCVPSSNQ----APVVWYHQSTKDGRKEEVRQRDVVSRTDEGGLVLLSVQKLDGG-TYPCYADES 634 (737)
T ss_pred ccccccceeeccccccc----cceeeEeeccCccccceeccCcceeecccCceeEEEEeeccCc-ccccccccC
Confidence 34455789999975444 3378862 2211100011234444456799999999999987 999999865
No 204
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=67.60 E-value=16 Score=32.20 Aligned_cols=81 Identities=17% Similarity=0.244 Sum_probs=55.3
Q ss_pred eeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecc-------------cCCCceEEE---------ccC
Q psy5694 21 YEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLN-------------TDTGGKYVV---------LSS 78 (129)
Q Consensus 21 y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~-------------~~~~~ry~v---------lps 78 (129)
|.-.+-+++.+-.|.++-|+|.+.---.+-+....|+..+.+|.|- ...+..|.+ |-+
T Consensus 266 y~kk~~~~~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~ 345 (500)
T PHA02914 266 YDKKKFDEVMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKN 345 (500)
T ss_pred ecccccceeEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhh
Confidence 3444555634555999999999864333556778999888655321 011334544 345
Q ss_pred ccEEEeccCCCCCCcceEEEeecc
Q psy5694 79 GDLYVFNATPNDGYKSYRCRTVNK 102 (129)
Q Consensus 79 G~L~I~nv~~~D~g~~Y~C~a~N~ 102 (129)
-.|.|.+|..+.+| =|.|+|...
T Consensus 346 STLTIkka~I~N~G-CY~~~a~~g 368 (500)
T PHA02914 346 STLTIKKAHINNAG-CYEAQAFMG 368 (500)
T ss_pred ceEEeeeEEEEcCC-ceEEEEecC
Confidence 67999999999998 999999743
No 205
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=66.91 E-value=9.7 Score=27.30 Aligned_cols=38 Identities=18% Similarity=0.272 Sum_probs=28.1
Q ss_pred CceEEEc-cCccEEEeccCCCCCCcceEEEeecccCCeEEe
Q psy5694 70 GGKYVVL-SSGDLYVFNATPNDGYKSYRCRTVNKITGESQA 109 (129)
Q Consensus 70 ~~ry~vl-psG~L~I~nv~~~D~g~~Y~C~a~N~ltge~k~ 109 (129)
..||.-. .+..|.|..++..|.| .|--...|. +|....
T Consensus 61 n~r~~F~~enlaLlIkaAq~qDSG-~Y~LEvT~~-sG~V~~ 99 (108)
T PF11465_consen 61 NNRFNFTSENLALLIKAAQPQDSG-LYCLEVTNE-SGKVCT 99 (108)
T ss_dssp HHHEEEETTTTEEEESS-SGGG-E-EEEEEEEET-TSCEEE
T ss_pred cceEeeeccCceEEEeecCcccCc-eEEEEEEcC-CCcEEE
Confidence 3566654 5899999999999997 999988885 477543
No 206
>PHA03042 CD47-like protein; Provisional
Probab=60.82 E-value=30 Score=28.71 Aligned_cols=65 Identities=17% Similarity=0.271 Sum_probs=38.4
Q ss_pred EEEeCCeEEEEeeCCCCCCC--ceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeeccc
Q psy5694 30 NVILGNTAVLRCQIPSYMSE--YIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKI 103 (129)
Q Consensus 30 ~V~~GntAvL~C~vp~~~~~--~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~l 103 (129)
+-.=.+|++++|.+..-... ..--++|..++..|... +...+ -.|....... =.| .|+|-|.+..
T Consensus 27 yT~CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~-n~tn~------aSL~~~f~~~-l~G-NYTCEv~~l~ 93 (286)
T PHA03042 27 YTTCNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKK-NNTNT------SSLKFNFSKN-LSG-NYTCEAINKF 93 (286)
T ss_pred EEecCceEEEEeecCChhhcCccceEEEEEeCCeeEEEe-cCCcc------eEEEEecccc-CCC-ceeEEEeecc
Confidence 44567899999998653211 23458999998766432 11111 2244443332 344 9999998754
No 207
>PHA03282 envelope glycoprotein E; Provisional
Probab=59.85 E-value=24 Score=31.52 Aligned_cols=40 Identities=18% Similarity=0.122 Sum_probs=28.0
Q ss_pred cCccEEEeccCCCCCCcceEEEeecccCCeEEecccceEEEEe
Q psy5694 77 SSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSIT 119 (129)
Q Consensus 77 psG~L~I~nv~~~D~g~~Y~C~a~N~ltge~k~S~~~~~L~V~ 119 (129)
.||.|+|.+++.+|.| .|.-...+.-+.+ .+.. .-.|+|.
T Consensus 122 ~n~tl~l~~a~~~DsG-~Y~L~~~~~~~~~-~~~~-~v~l~V~ 161 (540)
T PHA03282 122 VNGTLVLREARETDSG-MYVLSVSRAPNST-AARA-VVFLVVG 161 (540)
T ss_pred ecceEEEeeccccCCc-eEEEEecCCCCch-hheE-EEEEEec
Confidence 4899999999999998 9999876544333 3333 3355554
No 208
>PHA03270 envelope glycoprotein C; Provisional
Probab=48.91 E-value=1.8e+02 Score=25.79 Aligned_cols=27 Identities=11% Similarity=-0.086 Sum_probs=22.2
Q ss_pred cCccEEEeccCCCCCCcceEEEeecccC
Q psy5694 77 SSGDLYVFNATPNDGYKSYRCRTVNKIT 104 (129)
Q Consensus 77 psG~L~I~nv~~~D~g~~Y~C~a~N~lt 104 (129)
|.-.|.|+.++.+.+| .|..+.-|..+
T Consensus 180 p~~~L~I~slt~aTeG-vY~Wr~~~~~~ 206 (466)
T PHA03270 180 PTQRLVIQELTLATQG-MYYWARGPADR 206 (466)
T ss_pred CcceEEEEEcccccce-EEEEEEecCCC
Confidence 3445999999999998 99999777653
No 209
>PHA03189 UL14 tegument protein; Provisional
Probab=47.76 E-value=78 Score=26.90 Aligned_cols=91 Identities=19% Similarity=0.259 Sum_probs=50.3
Q ss_pred eeeeEeeeeeeEEEeCCeEEEEeeCCCCCC-C---ceeEeEEeecceeeecccCCCceEEE-----ccCccEEE------
Q psy5694 19 QKYEINVNYEHNVILGNTAVLRCQIPSYMS-E---YIIVTSWIQDDVNIYLNTDTGGKYVV-----LSSGDLYV------ 83 (129)
Q Consensus 19 q~y~~~v~~~~~V~~GntAvL~C~vp~~~~-~---~v~v~sW~~d~~~i~~~~~~~~ry~v-----lpsG~L~I------ 83 (129)
+.||......+.+-.|+-+.+.|.+|.+-= + .+..=-|..-...|.-....+++++. +++|.-..
T Consensus 52 enyE~~spAP~l~pyGdrvtVpC~fp~H~WPevsIrarfCys~e~s~eLv~da~~G~~l~ndl~~~L~~~~W~Fedlg~a 131 (348)
T PHA03189 52 ENYERNSPAPLLVPYGDRVTVPCTFPTHDWPEVSIRARFCYSPERSRELVVDADSGGELHNDLTYRLPEASWKFEDLGAA 131 (348)
T ss_pred hhcccCCCCccccCCCceeeeeeeecCCCCceeeEEEEEeeccccceEEEEEcccCCEeccccceecccceeeeecccce
Confidence 456766666657889999999999987621 1 11112342222443322233333321 22222111
Q ss_pred ------eccCCCCCCcceEEEeecccCCeEEec
Q psy5694 84 ------FNATPNDGYKSYRCRTVNKITGESQAS 110 (129)
Q Consensus 84 ------~nv~~~D~g~~Y~C~a~N~ltge~k~S 110 (129)
-+|..+-+| .|.|+-.|.-.|..-++
T Consensus 132 q~ltLtF~v~t~taG-~Y~CvLrN~tHglv~~r 163 (348)
T PHA03189 132 QRLTLTFRVSTSTAG-MYECVLRNETHGLVLQR 163 (348)
T ss_pred eEEEEEEEEEecccc-eEEEEeccccceeeeEE
Confidence 245556666 99999999877765433
No 210
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=46.72 E-value=65 Score=22.93 Aligned_cols=39 Identities=15% Similarity=0.258 Sum_probs=25.7
Q ss_pred ccEEEeccCCCCCCcceEEEeecccCCeEEecccceEEEEecCCCCC
Q psy5694 79 GDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGKLKSL 125 (129)
Q Consensus 79 G~L~I~nv~~~D~g~~Y~C~a~N~ltge~k~S~~~~~L~V~ep~~~~ 125 (129)
|+=+..-.+.+-.. .|.|. -|+.-|. .|.|+|.+|..++
T Consensus 55 g~~~~~tF~~~G~Y-~Y~C~-pH~~~GM------~G~V~Vg~~~~n~ 93 (116)
T TIGR02375 55 NEEYTVTVTEEGVY-GVKCT-PHYGMGM------VALIQVGDPPANL 93 (116)
T ss_pred CCEEEEEeCCCEEE-EEEcC-CCccCCC------EEEEEECCCCcCH
Confidence 44455555555555 89999 4444466 6899999875543
No 211
>PHA03270 envelope glycoprotein C; Provisional
Probab=46.58 E-value=1.3e+02 Score=26.60 Aligned_cols=72 Identities=11% Similarity=0.156 Sum_probs=51.0
Q ss_pred EEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCC-----cceEEEeec
Q psy5694 30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGY-----KSYRCRTVN 101 (129)
Q Consensus 30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g-----~~Y~C~a~N 101 (129)
.|+.|+.=-=.|.+-.|-+.......|++|+.++.+.-..+.....-.+|--.++-++.++.+ -+-+|.+.=
T Consensus 230 PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~ng~~V~~~~~i~~~~~~~~dGfs~vStvtsea~~~~~~PPsLrC~v~W 306 (466)
T PHA03270 230 AVLEGEPFGATCVAANYYPGDRAAFRWFEGGDEVFAPERVRTRVDAQRDGFSATSTLTSEARAGLAPPRNLTCEFTW 306 (466)
T ss_pred ccccCCCceEEEEeeeecCCCceEEEEEeCCccccCcceeeeeeEecCCCeeEEEEEeccccccCCCCCCceEEEEE
Confidence 679999999999997775555678999999977743212334455556775666777777654 267899873
No 212
>PF05083 LST1: LST-1 protein; InterPro: IPR007775 B144/LST1 is a gene encoded in the human major histocompatibility complex that produces multiple forms of alternatively spliced mRNA and encodes peptides fewer than 100 amino acids in length. B144/LST1 is strongly expressed in dendritic cells. Transfection of B144/LST1 into a variety of cells induces morphologic changes including the production of long, thin filopodia []. A possible role in modulating immune responses. Induces morphological changes including production of filopodia and microspikes when overexpressed in a variety of cell types and may be involved in dendritic cell maturation. Isoform 1 and isoform 2 have an inhibitory effect on lymphocyte proliferation [, ]. ; GO: 0000902 cell morphogenesis, 0006955 immune response, 0016020 membrane
Probab=45.75 E-value=16 Score=24.40 Aligned_cols=17 Identities=35% Similarity=0.475 Sum_probs=14.8
Q ss_pred CCCCCcceEEEeecccC
Q psy5694 88 PNDGYKSYRCRTVNKIT 104 (129)
Q Consensus 88 ~~D~g~~Y~C~a~N~lt 104 (129)
.||-...|-|+|+|+-|
T Consensus 58 kED~stDYAcIa~~kpt 74 (74)
T PF05083_consen 58 KEDPSTDYACIAKNKPT 74 (74)
T ss_pred ccCCCcCeeeeeccCCC
Confidence 78888899999999854
No 213
>PHA03269 envelope glycoprotein C; Provisional
Probab=40.35 E-value=1.8e+02 Score=26.38 Aligned_cols=78 Identities=21% Similarity=0.251 Sum_probs=49.0
Q ss_pred eEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCcc-EEEeccCC-CCCCcce----
Q psy5694 22 EINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGD-LYVFNATP-NDGYKSY---- 95 (129)
Q Consensus 22 ~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~-L~I~nv~~-~D~g~~Y---- 95 (129)
.+.+... -|+.|+.=-=.|.+-.+-+......+|.+|+.+|... .....+.+-.+|- =.++=++. ++.++.|
T Consensus 331 sVsV~p~-PVL~Ge~YkAtC~vA~YYPp~SvrlrWf~ng~~V~~~-~it~t~~~~~dGlFSrVSTLtlp~~~~~d~~PPs 408 (566)
T PHA03269 331 NITVIGD-PVLLGNPYAAYCKVNKYYPPHSVIVKWTSNFGNIGKN-FITDAIKENADGLFSSVSALHIPAQKNADYPPPA 408 (566)
T ss_pred CccccCC-ccccCCCceEEEEeeeecCCCceEEEEEeCCcccCcc-ccccceeecCCCceEEEEEEeccCccccCCCCCC
Confidence 5555555 7899999999999977755556778999998777532 1223334444552 23333433 3333355
Q ss_pred -EEEeec
Q psy5694 96 -RCRTVN 101 (129)
Q Consensus 96 -~C~a~N 101 (129)
+|.+.=
T Consensus 409 LrCeV~W 415 (566)
T PHA03269 409 IQCNVLW 415 (566)
T ss_pred ceEEEEE
Confidence 999873
No 214
>PHA03282 envelope glycoprotein E; Provisional
Probab=38.58 E-value=27 Score=31.27 Aligned_cols=20 Identities=25% Similarity=0.394 Sum_probs=19.0
Q ss_pred cEEEeccCCCCCCcceEEEee
Q psy5694 80 DLYVFNATPNDGYKSYRCRTV 100 (129)
Q Consensus 80 ~L~I~nv~~~D~g~~Y~C~a~ 100 (129)
+|++.|++.+++| .|.|+..
T Consensus 334 dL~F~nAp~saSG-LYVfVl~ 353 (540)
T PHA03282 334 NLQLRDASEASGG-LYVCVVY 353 (540)
T ss_pred ceEecCCCcccCc-eEEEEEE
Confidence 7999999999998 9999997
No 215
>PHA03286 envelope glycoprotein E; Provisional
Probab=38.36 E-value=34 Score=30.41 Aligned_cols=25 Identities=24% Similarity=0.228 Sum_probs=21.3
Q ss_pred EccCc-cEEEeccCCCCCCcceEEEee
Q psy5694 75 VLSSG-DLYVFNATPNDGYKSYRCRTV 100 (129)
Q Consensus 75 vlpsG-~L~I~nv~~~D~g~~Y~C~a~ 100 (129)
+.+++ +|.+.|++.+|+| .|.|++.
T Consensus 302 l~~~i~nL~f~nA~~s~SG-LYVfVl~ 327 (492)
T PHA03286 302 LESDIPSFRLANAQPTDAG-LYVVVAL 327 (492)
T ss_pred eccCCCceeecCCCcccCc-eEEEEEE
Confidence 44444 6999999999998 9999997
No 216
>PHA03273 envelope glycoprotein C; Provisional
Probab=36.66 E-value=2.1e+02 Score=25.65 Aligned_cols=71 Identities=14% Similarity=0.200 Sum_probs=47.0
Q ss_pred EEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCcc-EEEeccCCCCCC-----cceEEEee
Q psy5694 30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGD-LYVFNATPNDGY-----KSYRCRTV 100 (129)
Q Consensus 30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~-L~I~nv~~~D~g-----~~Y~C~a~ 100 (129)
.|+.|+.=-=.|.+-.+-+.......|.+|+.++.+.......+.+..+|- ..++=++.++.+ -+-+|.+.
T Consensus 246 PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~dg~~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~lrC~v~ 322 (486)
T PHA03273 246 PSLKGENYRAVCVVASYFPHSSVKLRWYKNAKEVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTPSLRCSIE 322 (486)
T ss_pred ccccCCCceEEEEeeeecCCCceEEEEEeCCeeccccccceeeEEEecCCceEEEEEEeccCcccCCCCCCceEEEE
Confidence 679999999999997775555677899999988863223334444444443 444444344432 27799986
No 217
>KOG1480|consensus
Probab=34.36 E-value=56 Score=31.02 Aligned_cols=80 Identities=14% Similarity=0.202 Sum_probs=50.9
Q ss_pred EeeeeeEeeeeeeEEEeCCeEEEEeeCCCCCC-CceeEeEEeecceee--ecccCCCceEEEccCccEEEeccCCCCCC-
Q psy5694 17 VKQKYEINVNYEHNVILGNTAVLRCQIPSYMS-EYIIVTSWIQDDVNI--YLNTDTGGKYVVLSSGDLYVFNATPNDGY- 92 (129)
Q Consensus 17 v~q~y~~~v~~~~~V~~GntAvL~C~vp~~~~-~~v~v~sW~~d~~~i--~~~~~~~~ry~vlpsG~L~I~nv~~~D~g- 92 (129)
....|..++.+. +++.|+..-|+|...+++. .|...-.|+++.+.+ .-..+.+++-...++=+ |..-+.++.+
T Consensus 23 ~l~~~~~~p~~~-yii~~~p~~l~c~a~~a~~i~~kc~~~wv~~~~~~~~~~~d~tsg~~~~~~si~--Isr~~v~~~~~ 99 (909)
T KOG1480|consen 23 DLPHFTTEPKSA-YIIKNKPLRLQCKANPATQIRFKCNSEWVHQSRHEKLEGTDETSGLGVREVSID--ISRQQVETSGG 99 (909)
T ss_pred CcceeeecCCcc-ceecCCCccceecCCcccccccccChhhhcCccceeeeccCcccceeEEeeeee--eehhhhhcccC
Confidence 335677888888 9999999999999866643 355667898877443 22334556665555444 4444444333
Q ss_pred -cceEEEe
Q psy5694 93 -KSYRCRT 99 (129)
Q Consensus 93 -~~Y~C~a 99 (129)
..|.|+-
T Consensus 100 ~~d~~cQc 107 (909)
T KOG1480|consen 100 PEDYWCQC 107 (909)
T ss_pred ccceeeee
Confidence 3566653
No 218
>PF00900 Ribosomal_S4e: Ribosomal family S4e; InterPro: IPR013845 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic and archaeal ribosomal proteins can be grouped on the basis of sequence similarities. One of these families includes yeast S7 (YS6); archaeal S4e; and mammalian and plant cytoplasmic S4 []. Two highly similar isoforms of mammalian S4 exist, one coded by a gene on chromosome Y, and the other on chromosome X. These proteins have 233 to 264 amino acids. This entry represents the central region of these proteins.; PDB: 2XZM_W 2XZN_W 3IZ6_D 3KBG_A 3U5G_E 3U5C_E 3IZB_D.
Probab=33.38 E-value=77 Score=21.01 Aligned_cols=36 Identities=28% Similarity=0.470 Sum_probs=25.8
Q ss_pred CceEEEcc--CccEEEeccCCCCCCcceEEEeecccCCe
Q psy5694 70 GGKYVVLS--SGDLYVFNATPNDGYKSYRCRTVNKITGE 106 (129)
Q Consensus 70 ~~ry~vlp--sG~L~I~nv~~~D~g~~Y~C~a~N~ltge 106 (129)
+..|.+++ .|.|..+.++++++. .=-|...|..++.
T Consensus 3 ~e~yRvl~d~kgr~~l~~I~~eea~-~KLckV~~k~~~~ 40 (77)
T PF00900_consen 3 GEHYRVLYDTKGRFVLHPISEEEAK-YKLCKVRNKTTGK 40 (77)
T ss_dssp TEEEEEEE-TTS-EEEEEE-TTGGG-EEEEEEEEEEEEG
T ss_pred CcEEEEEECCCCcEEEEECCHHHcc-CeEEEEeEEEEec
Confidence 45677764 789999999999984 4579999886543
No 219
>PHA03271 envelope glycoprotein C; Provisional
Probab=32.16 E-value=2.3e+02 Score=25.20 Aligned_cols=72 Identities=17% Similarity=0.215 Sum_probs=45.9
Q ss_pred EEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEE--ccCccEEEeccCCCCCC----cceEEEeec
Q psy5694 30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVV--LSSGDLYVFNATPNDGY----KSYRCRTVN 101 (129)
Q Consensus 30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~v--lpsG~L~I~nv~~~D~g----~~Y~C~a~N 101 (129)
.|+.|+.=-=.|.+-.+-+......+|.+|+..+.+....++.... -..|-=.|+-+..++.+ -+-+|.+.=
T Consensus 256 PVL~Ge~YkAtC~vAnYYPP~SvrlrWf~nG~~V~~~~~rdt~~~w~d~~~g~S~VSTltl~a~~~~~PPsLRCeV~W 333 (490)
T PHA03271 256 PVLSGENYKASCIVRHFYPPGSVYVSWRQNGNIATPRKDRDGSFWWFESGRGATLVSTITLGNSGIDPPPKISCLVAW 333 (490)
T ss_pred ccccCCCceEEEEeeeecCCCceEEEEEeCCccccCccccceeEEEecCCCceeEEEEEEcccccCCCCCCceEEEEE
Confidence 6799999999999977755556789999999776544333444322 12344444444333332 278999873
No 220
>PHA03269 envelope glycoprotein C; Provisional
Probab=29.04 E-value=1.1e+02 Score=27.62 Aligned_cols=36 Identities=17% Similarity=0.343 Sum_probs=25.7
Q ss_pred CceEEEc-c--Ccc--EEEeccCCCCCCcceEEEeecccCCe
Q psy5694 70 GGKYVVL-S--SGD--LYVFNATPNDGYKSYRCRTVNKITGE 106 (129)
Q Consensus 70 ~~ry~vl-p--sG~--L~I~nv~~~D~g~~Y~C~a~N~ltge 106 (129)
+++|.+- + .|+ |.|++++.+++| .|..+..|..+|.
T Consensus 275 ~~~yi~p~~a~p~~~pL~I~sltaATeG-vY~Wrv~~~~n~t 315 (566)
T PHA03269 275 KEKYIIPDRKTTSDFSLHILSLDASTEG-TYIWRVIHTANKN 315 (566)
T ss_pred CceEEeccCCCCCccceEEeecccccCc-eEEEEEecCCCCc
Confidence 4677652 1 122 999999999998 9999977654444
No 221
>PF04296 DUF448: Protein of unknown function (DUF448); InterPro: IPR007393 This entry represents a group of uncharacterised proteins. Some member sequences retain zinc-binding residues. The structure of the hypothetical cytosolic protein SP0554 from Streptococcus pneumoniae revealed an alpha+beta fold that could have evolved from a glucocorticoid receptor-like zinc finger domain [].; PDB: 1G2R_A.
Probab=28.90 E-value=61 Score=21.25 Aligned_cols=29 Identities=17% Similarity=0.320 Sum_probs=17.1
Q ss_pred eEEEccCccEEEeccCCCCCCcceEEEee
Q psy5694 72 KYVVLSSGDLYVFNATPNDGYKSYRCRTV 100 (129)
Q Consensus 72 ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~ 100 (129)
||+..++|.+.+.--+...+.|-|-|.-.
T Consensus 18 R~v~~~~~~i~~D~~~k~~GRGaYvc~~~ 46 (78)
T PF04296_consen 18 RFVRTPDGEIVPDPSGKLPGRGAYVCPDP 46 (78)
T ss_dssp EEEE-TTS-EEEETTS---SEEEEEES-H
T ss_pred EEEEeCCCEEEECCCCCCCCCeEEEcCCH
Confidence 78888888877775666666678988653
No 222
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=27.00 E-value=1.9e+02 Score=19.06 Aligned_cols=22 Identities=18% Similarity=0.332 Sum_probs=17.8
Q ss_pred CccEEEeccCCCCCCcceEEEee
Q psy5694 78 SGDLYVFNATPNDGYKSYRCRTV 100 (129)
Q Consensus 78 sG~L~I~nv~~~D~g~~Y~C~a~ 100 (129)
...+...+...+|+| ...|.|.
T Consensus 42 ~~~~~~~~~~~~d~G-~w~C~a~ 63 (80)
T PF05790_consen 42 KKLVSTFTPTTEDSG-TWVCTAS 63 (80)
T ss_dssp SSEEEEESBTCGGSE-EEEEEEE
T ss_pred ceEEEEecCCCCCCE-EEEEEEc
Confidence 344577788889998 9999995
No 223
>PRK10626 hypothetical protein; Provisional
Probab=23.04 E-value=72 Score=25.85 Aligned_cols=16 Identities=19% Similarity=0.393 Sum_probs=13.7
Q ss_pred CceEEEccCccEEEec
Q psy5694 70 GGKYVVLSSGDLYVFN 85 (129)
Q Consensus 70 ~~ry~vlpsG~L~I~n 85 (129)
.++|.|.|+|+|+|.+
T Consensus 45 sg~l~I~~dg~L~inG 60 (239)
T PRK10626 45 SGNLVISPDGNVMRNG 60 (239)
T ss_pred CCceEEcCCCCEEECC
Confidence 5779999999999875
No 224
>COG3698 Predicted periplasmic protein [Function unknown]
Probab=22.83 E-value=2.4e+02 Score=22.97 Aligned_cols=53 Identities=13% Similarity=0.286 Sum_probs=35.9
Q ss_pred eCCeEEEEeeCCCCCCCceeEeEEeecceeeecc--cCCCceEEEccCccEEEec
Q psy5694 33 LGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLN--TDTGGKYVVLSSGDLYVFN 85 (129)
Q Consensus 33 ~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~--~~~~~ry~vlpsG~L~I~n 85 (129)
+|.+.++--..--+.+||.|+-=.+.++++..+- ....+.|.++|+|-.++..
T Consensus 76 qg~~l~fAmN~GmY~~d~~PlGL~VE~G~e~~~ln~a~G~GNF~l~PnGVFyl~g 130 (250)
T COG3698 76 QGQSLLFAMNGGMYHPDYAPLGLYVENGKEQVPLNTAGGEGNFFLLPNGVFYLGG 130 (250)
T ss_pred ccceEEEEecCcccCCCCCcceEEecCCeeecccccCCCCCceeEcCCeeEEEcC
Confidence 3555555444444677888888777777443221 2356899999999999876
No 225
>PRK12700 flgH flagellar basal body L-ring protein; Reviewed
Probab=22.54 E-value=51 Score=26.39 Aligned_cols=12 Identities=33% Similarity=0.584 Sum_probs=10.4
Q ss_pred EccCccEEEecc
Q psy5694 75 VLSSGDLYVFNA 86 (129)
Q Consensus 75 vlpsG~L~I~nv 86 (129)
|||||+|+|+.-
T Consensus 153 VlpNGNLvI~Ge 164 (230)
T PRK12700 153 VLPNGNLQIAGE 164 (230)
T ss_pred ECCCCCEEEEEE
Confidence 689999999863
No 226
>PF01453 B_lectin: D-mannose binding lectin; InterPro: IPR001480 A bulb lectin super-family (Amaryllidaceae, Orchidaceae and Aliaceae) contains a ~115-residue-long domain whose overall three dimensional fold is very similar to that of [, ]: Dictyostelium discoideum comitin, an actin binding protein Curculigo latifolia curculin, a sweet tasting and taste-modifying protein This domain generally binds mannose, but in at least one protein, curculin, it is apparently devoid of mannose-binding activity. Each bulb-type lectin domain consists of three sequential beta-sheet subdomains (I, II, III) that are inter-related by pseudo three-fold symmetry. The three subdomains are flat four-stranded, antiparrallel beta-sheets. Together they form a 12-stranded beta-barrel in which the barrel axis coincides with the pseudo 3-fold axis.; GO: 0005529 sugar binding; PDB: 3M7H_A 3M7J_B 3MEZ_D 1DLP_A 1BWU_D 1KJ1_A 1B2P_A 1XD6_A 2DPF_C 2D04_B ....
Probab=22.37 E-value=1.1e+02 Score=21.20 Aligned_cols=33 Identities=12% Similarity=0.416 Sum_probs=14.3
Q ss_pred eEEeecc-eeeecccCCCceEEEccCccEEEeccC
Q psy5694 54 TSWIQDD-VNIYLNTDTGGKYVVLSSGDLYVFNAT 87 (129)
Q Consensus 54 ~sW~~d~-~~i~~~~~~~~ry~vlpsG~L~I~nv~ 87 (129)
+=|.-+. .+|.+.. ...+..+..+|+|+|.+..
T Consensus 4 vvW~an~~~p~~~~s-~~~~L~l~~dGnLvl~~~~ 37 (114)
T PF01453_consen 4 VVWVANRNSPLTSSS-GNYTLILQSDGNLVLYDSN 37 (114)
T ss_dssp ------TTEEEEECE-TTEEEEEETTSEEEEEETT
T ss_pred ccccccccccccccc-ccccceECCCCeEEEEcCC
Confidence 3466655 4553211 2244555567777777655
No 227
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=21.61 E-value=47 Score=28.97 Aligned_cols=22 Identities=23% Similarity=0.072 Sum_probs=16.8
Q ss_pred CccEEEeccCCCCCCcceEEEee
Q psy5694 78 SGDLYVFNATPNDGYKSYRCRTV 100 (129)
Q Consensus 78 sG~L~I~nv~~~D~g~~Y~C~a~ 100 (129)
+=+|++.|++.+++| .|.|++.
T Consensus 268 ~~~l~f~~a~~~~sG-LYv~V~~ 289 (439)
T PF02480_consen 268 GVDLQFTNAPESASG-LYVFVVY 289 (439)
T ss_dssp SSSEEESS--GGG-E-EEEEEEE
T ss_pred CcceEecCCCcccCc-eEEEEEE
Confidence 346999999999997 9999997
No 228
>PRK12407 flgH flagellar basal body L-ring protein; Reviewed
Probab=21.35 E-value=56 Score=26.01 Aligned_cols=12 Identities=33% Similarity=0.434 Sum_probs=10.3
Q ss_pred EccCccEEEecc
Q psy5694 75 VLSSGDLYVFNA 86 (129)
Q Consensus 75 vlpsG~L~I~nv 86 (129)
|||+|+|+|+.-
T Consensus 143 VlpNGnL~I~Ge 154 (221)
T PRK12407 143 VLPNGVLVIRGE 154 (221)
T ss_pred ECCCCCEEEEEE
Confidence 689999999863
No 229
>PHA03240 envelope glycoprotein M; Provisional
Probab=21.30 E-value=1.1e+02 Score=24.82 Aligned_cols=89 Identities=15% Similarity=0.218 Sum_probs=53.1
Q ss_pred eeeeeEEeeeeeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc-----------eee--e-cccCC-------
Q psy5694 11 FPMLPVVKQKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----------VNI--Y-LNTDT------- 69 (129)
Q Consensus 11 ~~v~AVv~q~y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-----------~~i--~-~~~~~------- 69 (129)
+-+.|++.-.|.---..+ .+.+|..++|-=. +...+ -+.+.|.+.. ..| + |.-..
T Consensus 16 ~v~~a~~~y~~seACiev-t~r~G~nVTLga~-~~lhp--gq~v~Wy~~~c~~~~G~G~~~~plC~Ytppk~~r~ktl~~ 91 (258)
T PHA03240 16 FVLSAMFFYEFSEACEEH-TTREGDPLLLGGG-HGLGA--GQKAHWYKHKCDGITGNGDKLHPICTYDPPKNGKGKTLDE 91 (258)
T ss_pred HHHHHHHHHhhhhhceec-ccccCCceeeCCc-ccCCC--CCEEEEEeeecccccCCCCCCceeEEecCCcccccccccc
Confidence 345566555555555555 7889999999433 33222 2568998811 122 1 21000
Q ss_pred ---Cce--EEEccCccEEEeccCCCCCCcceEEEeecccCCe
Q psy5694 70 ---GGK--YVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGE 106 (129)
Q Consensus 70 ---~~r--y~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~ltge 106 (129)
..+ |.= -+-.|.|.+|..+|.| .| |+-++..-|.
T Consensus 92 t~~nt~i~y~C-~NstL~i~~vn~sd~~-nY-cr~k~~~~g~ 130 (258)
T PHA03240 92 SAENSFILYEC-HNSTLIIAHLNLSDAG-EY-CRKKCPPKGD 130 (258)
T ss_pred ccCCCceEEEe-ccceEEEEEEeecCcc-hh-hhccCCCCCC
Confidence 111 222 4778999999999997 77 8888776666
No 230
>PRK12788 flgH flagellar basal body L-ring protein; Reviewed
Probab=20.19 E-value=61 Score=26.09 Aligned_cols=12 Identities=33% Similarity=0.648 Sum_probs=10.4
Q ss_pred EccCccEEEecc
Q psy5694 75 VLSSGDLYVFNA 86 (129)
Q Consensus 75 vlpsG~L~I~nv 86 (129)
|||||+|+|..-
T Consensus 157 VLPNGNLvI~G~ 168 (234)
T PRK12788 157 VLPNGNLLISGS 168 (234)
T ss_pred EcCCCCEEEEEE
Confidence 689999999863
Done!