RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5694
(129 letters)
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion,
membrane, development protein; HET: NAG; 1.95A
{Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Length = 388
Score = 86.5 bits (214), Expect = 2e-21
Identities = 41/90 (45%), Positives = 64/90 (71%), Gaps = 1/90 (1%)
Query: 31 VILGNTAVLRCQIPSYMSEYIIVTSWIQDD-VNIYLNTDTGGKYVVLSSGDLYVFNATPN 89
VI GN+AV++C IPS++++++ V SW D+ N + + GKY+VL SG+L++ P
Sbjct: 115 VIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPE 174
Query: 90 DGYKSYRCRTVNKITGESQASVFQTRLSIT 119
DGYKSY+CRT +++TGE++ S + RL IT
Sbjct: 175 DGYKSYQCRTKHRLTGETRLSATKGRLVIT 204
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30,
N-terminal eight IG domains...; immunoglobulin domain;
HET: NAG NDG; 4.19A {Drosophila melanogaster}
Length = 816
Score = 80.8 bits (199), Expect = 4e-19
Identities = 41/90 (45%), Positives = 64/90 (71%), Gaps = 1/90 (1%)
Query: 31 VILGNTAVLRCQIPSYMSEYIIVTSWIQDD-VNIYLNTDTGGKYVVLSSGDLYVFNATPN 89
VI GN+AV++C IPS++++++ V SW D+ N + + GKY+VL SG+L++ P
Sbjct: 150 VIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPE 209
Query: 90 DGYKSYRCRTVNKITGESQASVFQTRLSIT 119
DGYKSY+CRT +++TGE++ S + RL IT
Sbjct: 210 DGYKSYQCRTKHRLTGETRLSATKGRLVIT 239
Score = 44.5 bits (105), Expect = 2e-06
Identities = 17/81 (20%), Positives = 33/81 (40%), Gaps = 7/81 (8%)
Query: 31 VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPND 90
++ G T ++ C + Y + I W +D+ + K V +G L + N N
Sbjct: 538 IVAGETLIVTCPVAGYPIDSI---VWERDNRAL----PINRKQKVFPNGTLIIENVERNS 590
Query: 91 GYKSYRCRTVNKITGESQASV 111
+Y C N+ ++ S+
Sbjct: 591 DQATYTCVAKNQEGYSARGSL 611
Score = 44.5 bits (105), Expect = 2e-06
Identities = 14/81 (17%), Positives = 21/81 (25%), Gaps = 4/81 (4%)
Query: 31 VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPND 90
+G L C +P I W D I + V L + +
Sbjct: 631 AQVGQYLTLHCSVPGGDLPLNI--DWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASH 688
Query: 91 GYKSYRCRTVNKITGESQASV 111
+ C N G Q +
Sbjct: 689 AGN-FTCHARNLA-GHQQFTT 707
Score = 37.2 bits (86), Expect = 7e-04
Identities = 14/85 (16%), Positives = 29/85 (34%), Gaps = 7/85 (8%)
Query: 31 VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTD--TGGKYVVLSSGDLYVFNATP 88
G+ A + C+ + + +W + + + + G L+V N
Sbjct: 726 FAQGSDAKVECKADGFPKPQV---TWKKAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQK 782
Query: 89 NDGYKSYRCRTVNKITGESQASVFQ 113
+ Y C +N I G ++V
Sbjct: 783 TNEGY-YLCEAINGI-GSGLSAVIM 805
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor
protein tyrosine phosphatase; HET: NAG; 2.00A {Mus
musculus} PDB: 3jxa_A*
Length = 384
Score = 66.8 bits (163), Expect = 3e-14
Identities = 19/104 (18%), Positives = 37/104 (35%), Gaps = 6/104 (5%)
Query: 16 VVKQKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVV 75
+ ++ +V G VL C P + E +WI ++ Y + ++V
Sbjct: 99 AYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSY--AWIFNEYPSYQD---NRRFVS 153
Query: 76 LSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSIT 119
+G+LY+ +D +Y C N +T +
Sbjct: 154 QETGNLYIAKVEKSDV-GNYTCVVTNTVTNHKVLGPPTPLILRN 196
Score = 32.5 bits (74), Expect = 0.024
Identities = 11/74 (14%), Positives = 21/74 (28%), Gaps = 16/74 (21%)
Query: 34 GNTAVLRCQI-----PSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATP 88
L C++ P W + ++ + D + G L + N
Sbjct: 23 EKKVKLSCEVKGNPKPHI--------RWKLNGTDVDIGMD---FRYSVVDGSLLINNPNK 71
Query: 89 NDGYKSYRCRTVNK 102
+Y+C N
Sbjct: 72 TQDAGTYQCIATNS 85
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus
gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB:
2om5_A
Length = 382
Score = 63.7 bits (155), Expect = 3e-13
Identities = 14/78 (17%), Positives = 33/78 (42%), Gaps = 4/78 (5%)
Query: 31 VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPND 90
+ G + C P + W+ ++ ++ D G ++V ++G+LY+ +D
Sbjct: 113 ITEGWGVMFTCSPPPHYPALSY--RWLLNEFPNFIPAD-GRRFVSQTTGNLYIAKTEASD 169
Query: 91 GYKSYRCRTVNKITGESQ 108
+Y C + I ++
Sbjct: 170 L-GNYSCFATSHIDFITK 186
Score = 32.5 bits (74), Expect = 0.028
Identities = 14/74 (18%), Positives = 23/74 (31%), Gaps = 16/74 (21%)
Query: 34 GNTAVLRCQI-----PSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATP 88
L C+ +Y W + + + D+ L +GDL + N
Sbjct: 22 EEKVTLTCRARANPPATY--------RWKMNGTELKMGPDS---RYRLVAGDLVISNPVK 70
Query: 89 NDGYKSYRCRTVNK 102
SY+C N
Sbjct: 71 AKDAGSYQCVATNA 84
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion
comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Length = 201
Score = 56.8 bits (137), Expect = 4e-11
Identities = 20/89 (22%), Positives = 40/89 (44%), Gaps = 3/89 (3%)
Query: 31 VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPND 90
V G VL C P + + + W+ ++ +++ D ++V ++G+LY+ N +D
Sbjct: 20 VKEGKGMVLLCDPPYHFPDDLSYR-WLLNEFPVFITMD-KRRFVSQTNGNLYIANVEASD 77
Query: 91 GYKSYRCRTVNKITGESQASVFQTRLSIT 119
+Y C + +S S F + I
Sbjct: 78 K-GNYSCFVSSPSITKSVFSKFIPLIPIP 105
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo
sapiens} PDB: 3p40_A*
Length = 404
Score = 57.2 bits (138), Expect = 6e-11
Identities = 17/82 (20%), Positives = 24/82 (29%), Gaps = 5/82 (6%)
Query: 31 VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPND 90
V G L+C P + +I W+ + + +GDLY N D
Sbjct: 128 VQEGAPLTLQCNPPPGLPSPVI--FWMSSSMEPITQDK---RVSQGHNGDLYFSNVMLQD 182
Query: 91 GYKSYRCRTVNKITGESQASVF 112
Y C T Q
Sbjct: 183 MQTDYSCNARFHFTHTIQQKNP 204
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A
{Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
b.1.1.4
Length = 395
Score = 55.3 bits (133), Expect = 3e-10
Identities = 20/94 (21%), Positives = 29/94 (30%), Gaps = 7/94 (7%)
Query: 31 VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDT---GGKYVVLSSGDLYVFNAT 87
I G L C +P+ + +I +W + N D + G+LY T
Sbjct: 112 PIEGRPFQLDCVLPNAYPKPLI--TWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVT 169
Query: 88 PNDG--YKSYRCRTVNKITGESQASVFQTRLSIT 119
D Y C N E V +T
Sbjct: 170 KEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVT 203
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker,
immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Length = 642
Score = 49.6 bits (118), Expect = 4e-08
Identities = 12/95 (12%), Positives = 26/95 (27%), Gaps = 13/95 (13%)
Query: 30 NVILGNTAVLRCQ-----IPSY-------MSEYIIVTSWIQDDVNIYLNTDTGGKYVVLS 77
NV G +L + Y + + ++ G+ ++
Sbjct: 10 NVAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYP 69
Query: 78 SGDLYVFNATPNDGYKSYRCRTVNKITGESQASVF 112
+ L + N ND Y + +A+
Sbjct: 70 NASLLIQNIIQNDT-GFYTLHVIKSDLVNEEATGQ 103
Score = 42.6 bits (100), Expect = 9e-06
Identities = 20/98 (20%), Positives = 39/98 (39%), Gaps = 8/98 (8%)
Query: 14 LPVVKQKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKY 73
+ K I+ N V + C+ + + Y+ W ++ ++ ++
Sbjct: 106 VYPELPKPSISSNNSKPVEDKDAVAFTCEPETQDATYL----WWVNNQSLPVSPRL---Q 158
Query: 74 VVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASV 111
+ + L +FN T ND SY+C T N ++ SV
Sbjct: 159 LSNGNRTLTLFNVTRNDT-ASYKCETQNPVSARRSDSV 195
Score = 39.2 bits (91), Expect = 1e-04
Identities = 22/112 (19%), Positives = 37/112 (33%), Gaps = 20/112 (17%)
Query: 2 KMKDTFLLFFPMLPVVKQKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDV 61
+ D+ +L P +N + G L C S SW +
Sbjct: 190 RRSDSVILNVLYGPDAPTISPLNTS----YRSGENLNLSCHAASN---PPAQYSWFVNGT 242
Query: 62 NIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQ 113
S+ +L++ N T N+ SY C+ N TG ++ +V
Sbjct: 243 ------------FQQSTQELFIPNITVNNS-GSYTCQAHNSDTGLNRTTVTT 281
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin
superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus
norvegicus}
Length = 403
Score = 48.3 bits (115), Expect = 1e-07
Identities = 19/83 (22%), Positives = 33/83 (39%), Gaps = 7/83 (8%)
Query: 31 VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPND 90
+G+T +L+C++ I W ++ ++ + VVL SG L + P D
Sbjct: 133 AFMGDTVLLKCEVIGDPMPTI---HWQKNQQDLNPIPGDS-RVVVLPSGALQISRLQPGD 188
Query: 91 -GYKSYRCRTVNKITGESQASVF 112
G YRC N + +
Sbjct: 189 SG--VYRCSARNPASTRTGNEAE 209
Score = 41.7 bits (98), Expect = 2e-05
Identities = 23/82 (28%), Positives = 33/82 (40%), Gaps = 10/82 (12%)
Query: 31 VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPND 90
I G AVL C + Y +W++ + I L KY +L +L + N T +D
Sbjct: 233 AIEGKDAVLECCVSGYP---PPSFTWLRGEEVIQL---RSKKYSLLGGSNLLISNVTDDD 286
Query: 91 -GYKSYRCRTVNKITGESQASV 111
G +Y C K AS
Sbjct: 287 SG--TYTCVVTYKN-ENISASA 305
Score = 39.4 bits (92), Expect = 9e-05
Identities = 12/88 (13%), Positives = 30/88 (34%), Gaps = 21/88 (23%)
Query: 31 VILGNTAVLRCQI-----PSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFN 85
C + P+ +W+++ + + ++ +L +
Sbjct: 324 AYESMDIEFECAVSGKPVPTV--------NWMKNGDVV----IPSDYFQIVGGSNLRILG 371
Query: 86 ATPND-GYKSYRCRTVNKITGESQASVF 112
+D G+ Y+C N+ G +Q+S
Sbjct: 372 VVKSDEGF--YQCVAENEA-GNAQSSAQ 396
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, membrane, glycoprote adhesion,
transmembrane; HET: NAG; 2.00A {Homo sapiens}
Length = 189
Score = 47.1 bits (112), Expect = 1e-07
Identities = 17/95 (17%), Positives = 37/95 (38%), Gaps = 18/95 (18%)
Query: 30 NVILGNTAVLRCQI-----PSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVF 84
G A + C++ P+ SW+ + + T + ++ +L++ +L +
Sbjct: 13 EFKQGEDAEVVCRVSSSPAPAV--------SWLYHNEEV--TTISDNRFAMLANNNLQIL 62
Query: 85 NATPND-GYKSYRCRTVNKITGESQASVFQTRLSI 118
N +D G YRC + GE +++
Sbjct: 63 NINKSDEGI--YRCEGRVEARGEIDFRDIIVIVNV 95
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane,
transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo
sapiens}
Length = 291
Score = 47.5 bits (113), Expect = 2e-07
Identities = 17/94 (18%), Positives = 37/94 (39%), Gaps = 18/94 (19%)
Query: 31 VILGNTAVLRCQI-----PSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFN 85
G A + C++ P+ SW+ + + T + ++ +L++ +L + N
Sbjct: 110 FKQGEDAEVVCRVSSSPAPAV--------SWLYHNEEV--TTISDNRFAMLANNNLQILN 159
Query: 86 ATPND-GYKSYRCRTVNKITGESQASVFQTRLSI 118
+D G YRC + GE +++
Sbjct: 160 INKSDEGI--YRCEGRVEARGEIDFRDIIVIVNV 191
Score = 37.1 bits (86), Expect = 5e-04
Identities = 20/97 (20%), Positives = 32/97 (32%), Gaps = 23/97 (23%)
Query: 31 VILGNTAVLRCQI-----PSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFN 85
G C+ P+ SW ++ I + + S+ +L V N
Sbjct: 206 AERGEEMTFSCRASGSPEPAI--------SWFRNGKLI---EENEKYILKGSNTELTVRN 254
Query: 86 ATPND-GYKSYRCRTVNKITGESQASVFQTRLSITGK 121
+D G Y CR NK GE + L + +
Sbjct: 255 IINSDGGP--YVCRATNKA-GEDEKQA---FLQVFVQ 285
Score = 27.1 bits (60), Expect = 1.9
Identities = 19/103 (18%), Positives = 34/103 (33%), Gaps = 18/103 (17%)
Query: 31 VILGNTAVLRCQIPSY-MSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGD---LYVFNA 86
+ +G + C S W ++T + VV G L ++NA
Sbjct: 16 LSVGESKFFTCTAIGEPES-----IDWYNPQGEKIISTQ---RVVVQKEGVRSRLTIYNA 67
Query: 87 TPND-GYKSYRCRTVNKI--TGESQASV-FQTRLSITGKLKSL 125
D G YRC+ + T E+ + +L+ +
Sbjct: 68 NIEDAG--IYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQ 108
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 100
Score = 44.7 bits (106), Expect = 2e-07
Identities = 17/88 (19%), Positives = 32/88 (36%), Gaps = 20/88 (22%)
Query: 30 NVILGNTAVLRCQI-----PSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVF 84
+ + TA+L+C+ P SW+++ + + G L +
Sbjct: 19 TLAVDGTALLKCKATGDPLPVI--------SWLKEGFTF---PGRDPRATIQEQGTLQIK 67
Query: 85 NATPND-GYKSYRCRTVNKITGESQASV 111
N +D G +Y C + GE+ S
Sbjct: 68 NLRISDTG--TYTCVATSSS-GETSWSA 92
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation,
phosphorylation, disease MU neuronal development,
immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens}
PDB: 2v9q_A
Length = 212
Score = 45.6 bits (108), Expect = 6e-07
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 10/82 (12%)
Query: 31 VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPND 90
V +G AV+ CQ P E I SW +D + D + + + G L + +D
Sbjct: 123 VAVGEPAVMECQPPRGHPEPTI--SWKKDGSPL----DDKDERITIRGGKLMITYTRKSD 176
Query: 91 -GYKSYRCRTVNKITGESQASV 111
G Y C N + GE ++ V
Sbjct: 177 AG--KYVCVGTNMV-GERESEV 195
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in
U twenty twenty, neurogenesis, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 44.0 bits (104), Expect = 7e-07
Identities = 20/88 (22%), Positives = 29/88 (32%), Gaps = 20/88 (22%)
Query: 31 VILGNTAVLRCQI-----PSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFN 85
V + T VL C P+ W +D V + + L +G L +
Sbjct: 20 VAVDGTFVLSCVATGSPVPTI--------LWRKDGVLVSTQ---DSRIKQLENGVLQIRY 68
Query: 86 ATPND-GYKSYRCRTVNKITGESQASVF 112
A D G Y C GE+ S +
Sbjct: 69 AKLGDTG--RYTCIASTPS-GEATWSAY 93
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell
adhesion, immunoglobulin domain; 3.2A {Drosophila
melanogaster} PDB: 2vra_A*
Length = 217
Score = 43.7 bits (103), Expect = 3e-06
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 10/85 (11%)
Query: 31 VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTD----TGGKYVVLSSGDLYVFNA 86
V G TA+L C P + E + WI+D V + + ++ G+L + N
Sbjct: 120 VAKGETALLECGPPKGIPEPTL--IWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNV 177
Query: 87 TPND-GYKSYRCRTVNKITGESQAS 110
P D G +Y+C N + G ++S
Sbjct: 178 EPIDEG--NYKCIAQNLV-GTRESS 199
Score = 28.3 bits (63), Expect = 0.70
Identities = 16/82 (19%), Positives = 27/82 (32%), Gaps = 19/82 (23%)
Query: 31 VILGNTAVLRCQI-----PSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVF- 84
V A L C++ P+ W +D + N + V G L+ +
Sbjct: 21 VKKNEPATLNCKVEGKPEPTI--------EWFKDGEPVSTN-EKKSHRVQFKDGALFFYR 71
Query: 85 ---NATPNDGYKSYRCRTVNKI 103
DG + Y C N++
Sbjct: 72 TMQGKKEQDGGE-YWCVAKNRV 92
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold,
glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4
b.1.1.4 PDB: 2ncm_A 3ncm_A
Length = 191
Score = 43.3 bits (102), Expect = 4e-06
Identities = 19/84 (22%), Positives = 29/84 (34%), Gaps = 18/84 (21%)
Query: 30 NVILGNTAVLRCQI-----PSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVF 84
G AV+ C + P+ W ++ L D +++VLS+ L +
Sbjct: 111 EFKEGEDAVIVCDVVSSLPPTI--------IWKHKGRDVILKKD--VRFIVLSNNYLQIR 160
Query: 85 NATPND-GYKSYRCRTVNKITGES 107
D G YRC GE
Sbjct: 161 GIKKTDEGT--YRCEGRILARGEI 182
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 42.8 bits (101), Expect = 7e-06
Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 6/82 (7%)
Query: 30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPN 89
NV G A L+C+ + ++ SWI + + + + VLS G L N T
Sbjct: 352 NVTEGMAAELKCRASTSLTS----VSWITPNGTVMTHGAYKVRIAVLSDGTLNFTNVTVQ 407
Query: 90 DGYKSYRCRTVNKITGESQASV 111
D Y C N + G + AS
Sbjct: 408 DT-GMYTCMVSNSV-GNTTASA 427
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, IG, membrane, homphilic,
glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB:
2xy2_A* 2vaj_A
Length = 189
Score = 42.1 bits (99), Expect = 8e-06
Identities = 17/94 (18%), Positives = 37/94 (39%), Gaps = 18/94 (19%)
Query: 31 VILGNTAVLRCQI-----PSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFN 85
G A + C++ P+ SW+ + + +D ++ +L++ +L + N
Sbjct: 108 FKQGEDAEVVCRVSSSPAPAV--------SWLYHNEEVTTISD--NRFAMLANNNLQILN 157
Query: 86 ATPND-GYKSYRCRTVNKITGESQASVFQTRLSI 118
+D G YRC + GE +++
Sbjct: 158 INKSDEG--IYRCEGRVEARGEIDFRDIIVIVNV 189
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling
protein,transferase; 2.21A {Rattus norvegicus}
Length = 192
Score = 41.6 bits (98), Expect = 1e-05
Identities = 25/86 (29%), Positives = 33/86 (38%), Gaps = 21/86 (24%)
Query: 31 VILGNTAVLRCQI-----PSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFN 85
+I G AVL C PS SWI+ D + + VL SG L + N
Sbjct: 112 IIEGLKAVLPCTTMGNPKPSV--------SWIKGDSAL----RENSRIAVLESGSLRIHN 159
Query: 86 ATPND-GYKSYRCRTVNKITGESQAS 110
D G YRC N + G + +
Sbjct: 160 VQKEDAGQ--YRCVAKNSL-GTAYSK 182
Score = 37.4 bits (87), Expect = 3e-04
Identities = 16/91 (17%), Positives = 31/91 (34%), Gaps = 21/91 (23%)
Query: 30 NVILGNTAVLRCQI-----PSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGD-LYV 83
+ ++ A C + P SW ++ + I +Y + +G L +
Sbjct: 18 DALVEEVATFMCAVESYPQPEI--------SWTRNKILI---KLFDTRYSIRENGQLLTI 66
Query: 84 FNATPND-GYKSYRCRTVNKITGESQASVFQ 113
+ +D G Y C N + G + S
Sbjct: 67 LSVEDSDDG--IYCCTANNGV-GGAVESCGA 94
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 42.0 bits (99), Expect = 1e-05
Identities = 21/85 (24%), Positives = 33/85 (38%), Gaps = 9/85 (10%)
Query: 28 EHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNAT 87
+ N+ G A L+C+ P S W+ + + + + VL+ G L +
Sbjct: 361 DLNISEGRMAELKCRTPPMSS-----VKWLLPNGTVLSHASRHPRISVLNDGTLNFSHVL 415
Query: 88 PND-GYKSYRCRTVNKITGESQASV 111
+D G Y C N G S AS
Sbjct: 416 LSDTG--VYTCMVTNVA-GNSNASA 437
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM;
2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
PDB: 1ie5_A
Length = 291
Score = 41.8 bits (98), Expect = 1e-05
Identities = 25/101 (24%), Positives = 32/101 (31%), Gaps = 21/101 (20%)
Query: 28 EHNVILGNTAVLRCQI-----PSYMSEYIIVTSWIQDDVNIYLNT-DTGGKYVVLSSGDL 81
LG + L C P+ SW +D I D S +L
Sbjct: 205 NATANLGQSVTLVCDADGFPEPTM--------SWTKDGEPIENEEEDDEKHIFSDDSSEL 256
Query: 82 YVFNATPND-GYKSYRCRTVNKITGESQASVFQTRLSITGK 121
+ N ND Y C NK GE AS+ L + K
Sbjct: 257 TIRNVDKNDEAE--YVCIAENKA-GEQDASI---HLKVFAK 291
Score = 39.1 bits (91), Expect = 1e-04
Identities = 20/79 (25%), Positives = 31/79 (39%), Gaps = 8/79 (10%)
Query: 31 VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPND 90
G AV+ C + S + I W ++ L D +++VLS+ L + D
Sbjct: 112 FKEGEDAVIVCDVVSSLPPTI---IWKHKGRDVILKKD--VRFIVLSNNYLQIRGIKKTD 166
Query: 91 -GYKSYRCRTVNKITGESQ 108
G +YRC GE
Sbjct: 167 EG--TYRCEGRILARGEIN 183
Score = 37.2 bits (86), Expect = 7e-04
Identities = 23/97 (23%), Positives = 40/97 (41%), Gaps = 12/97 (12%)
Query: 31 VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVV---LSSGDLYVFNAT 87
+ +G + CQ+ + I SW + L+ + VV S L ++NA
Sbjct: 14 ISVGESKFFLCQVAGDAKDKDI--SWFSPN-GEKLSPNQQRISVVWNDDDSSTLTIYNAN 70
Query: 88 PND-GYKSYRCRTVNKITGESQASVFQTRLSITGKLK 123
+D G Y+C + +S+A+V + I KL
Sbjct: 71 IDDAGI--YKCVVTAEDGTQSEATV---NVKIFQKLM 102
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like
protein 3, nephrin- like 2, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 40.6 bits (95), Expect = 1e-05
Identities = 21/111 (18%), Positives = 35/111 (31%), Gaps = 15/111 (13%)
Query: 17 VKQKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVL 76
V I+ + + G ++C I S + +W + + + T G+Y V
Sbjct: 11 VNGPPIISSTQTQHALHGEKGQIKCFIRS--TPPPDRIAWSWKENVL--ESGTSGRYTVE 66
Query: 77 SS-------GDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG 120
+ L + N D Y C N G + RL G
Sbjct: 67 TISTEEGVISTLTISNIVRADFQTIYNCTAWNSF-GSDTEII---RLKEQG 113
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin
superfamily, integrin-binding, cell adhesion protein;
1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A
1vsc_A
Length = 202
Score = 40.9 bits (95), Expect = 3e-05
Identities = 10/108 (9%), Positives = 29/108 (26%), Gaps = 3/108 (2%)
Query: 14 LPVVKQKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNT--DTGG 71
+ + + ++ + G ++C + + ++ D + +
Sbjct: 86 VEIYSFPKDPEIHLSGPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDAD 145
Query: 72 KYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSIT 119
+ + + F D K CR I E + +
Sbjct: 146 RKSLETKSLEVTFTPVIEDIGKVLVCRAKLHI-DEMDSVPTVRQAVKE 192
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila
melanogaster} PDB: 3pxj_A
Length = 212
Score = 40.5 bits (95), Expect = 4e-05
Identities = 17/86 (19%), Positives = 31/86 (36%), Gaps = 21/86 (24%)
Query: 31 VILGNTAVLRCQI-----PSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFN 85
+ +G+T ++ C+ P+ WI++ + D L G L + N
Sbjct: 122 IEVGHTVLMTCKAIGNPTPNI--------YWIKNQTKV----DMSNPRYSLKDGFLQIEN 169
Query: 86 ATPND-GYKSYRCRTVNKITGESQAS 110
+ D G Y C N + G +
Sbjct: 170 SREEDQG--KYECVAENSM-GTEHSK 192
Score = 32.8 bits (75), Expect = 0.014
Identities = 14/85 (16%), Positives = 26/85 (30%), Gaps = 19/85 (22%)
Query: 31 VILGNTAVLRCQI-----PSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFN 85
V +G A C PS W ++ + + V+ G + +
Sbjct: 18 VRVGGVASFYCAARGDPPPSI--------VWRKNGKKV--SGTQSRYTVLEQPGGISILR 67
Query: 86 ATPNDGYK---SYRCRTVNKITGES 107
P + Y C N + G++
Sbjct: 68 IEPVRAGRDDAPYECVAENGV-GDA 91
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor,
tight junction formation, immunoglobulin superfamily,
immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1
b.1.1.4 PDB: 3eoy_G
Length = 209
Score = 40.3 bits (94), Expect = 4e-05
Identities = 18/89 (20%), Positives = 30/89 (33%), Gaps = 12/89 (13%)
Query: 30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLN------TDTGGKYVVLSSGDLYV 83
+ +GN AVL C +W +D + + N + ++G+L
Sbjct: 118 SATIGNRAVLTCSEQDGSPPSEY--TWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVF 175
Query: 84 FNATPND-GYKSYRCRTVNKITGESQASV 111
+ +D G Y C N G S
Sbjct: 176 DPLSASDTGE--YSCEARNGY-GTPMTSN 201
Score = 31.9 bits (72), Expect = 0.032
Identities = 17/92 (18%), Positives = 25/92 (27%), Gaps = 14/92 (15%)
Query: 28 EHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGK-------YVVLSSGD 80
E + N L C + S + W D + K V
Sbjct: 13 EVRIPENNPVKLSCAYSGFSSPRV---EWKFDQGDTTRLVCYNNKITASYEDRVTFLPTG 69
Query: 81 LYVFNATPND-GYKSYRCRTVNKITGESQASV 111
+ + T D G +Y C + G S V
Sbjct: 70 ITFKSVTREDTG--TYTCMVSEEG-GNSYGEV 98
>1f97_A Junction adhesion molecule; immunoglobulin superfamily,
beta-sandwich fold, cell adhesion; 2.50A {Mus musculus}
SCOP: b.1.1.1 b.1.1.4
Length = 212
Score = 40.3 bits (94), Expect = 4e-05
Identities = 22/90 (24%), Positives = 31/90 (34%), Gaps = 13/90 (14%)
Query: 30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNI-------YLNTDTGGKYVVLSSGDLY 82
+V +GN AVL C SW +D +++ + SGDL
Sbjct: 115 SVTIGNRAVLTCSEHDGSPPSEY--SWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLI 172
Query: 83 VFNATPND-GYKSYRCRTVNKITGESQASV 111
T D G Y C+ N G + S
Sbjct: 173 FDPVTAFDSGE--YYCQAQNGY-GTAMRSE 199
Score = 32.2 bits (73), Expect = 0.028
Identities = 15/92 (16%), Positives = 26/92 (28%), Gaps = 14/92 (15%)
Query: 28 EHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGK-------YVVLSSGD 80
+ V + L C + S + W + + V SS
Sbjct: 10 DVQVPENESIKLTCTYSGFSSPRV---EWKFVQGSTTALVCYNSQITAPYADRVTFSSSG 66
Query: 81 LYVFNATPND-GYKSYRCRTVNKITGESQASV 111
+ + T D G Y C + G++ V
Sbjct: 67 ITFSSVTRKDNG--EYTCMVSEEG-GQNYGEV 95
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta
trefoil, IG domain, growth factor/growth factor receptor
complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 334
Score = 40.4 bits (94), Expect = 5e-05
Identities = 18/82 (21%), Positives = 27/82 (32%), Gaps = 10/82 (12%)
Query: 31 VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPND 90
G+ L C P W++D + + V++ L V NA+ D
Sbjct: 20 FGSGDAVELSCPPPGGGPMGPT--VWVKDGTGL-----VPSERVLVGPQRLQVLNASHED 72
Query: 91 -GYKSYRCRTVNKITGESQASV 111
G +Y CR SV
Sbjct: 73 SG--AYSCRQRLTQRVLCHFSV 92
Score = 40.0 bits (93), Expect = 6e-05
Identities = 20/89 (22%), Positives = 30/89 (33%), Gaps = 17/89 (19%)
Query: 29 HNVILGNTAVLRCQ-----IPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYV 83
V NT RC PS SW+++ GG + L +
Sbjct: 133 LAVPAANTVRFRCPAAGNPTPSI--------SWLKNGREFRGEHRIGGIKLRHQQWSLVM 184
Query: 84 FNATPND-GYKSYRCRTVNKITGESQASV 111
+ P+D G +Y C NK G + +
Sbjct: 185 ESVVPSDRG--NYTCVVENKF-GSIRQTY 210
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein
complex, receptor tyrosine kinas binding, immunoglobulin
domain, kinase, membrane, nucleotid binding; HET: NAG;
2.10A {Homo sapiens}
Length = 241
Score = 40.3 bits (94), Expect = 5e-05
Identities = 20/89 (22%), Positives = 30/89 (33%), Gaps = 17/89 (19%)
Query: 29 HNVILGNTAVLRCQ-----IPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYV 83
V NT RC PS SW+++ GG + L +
Sbjct: 25 LAVPAANTVRFRCPAAGNPTPSI--------SWLKNGREFRGEHRIGGIKLRHQQWSLVM 76
Query: 84 FNATPND-GYKSYRCRTVNKITGESQASV 111
+ P+D G +Y C NK G + +
Sbjct: 77 ESVVPSDRG--NYTCVVENKF-GSIRQTY 102
Score = 38.4 bits (89), Expect = 2e-04
Identities = 16/91 (17%), Positives = 30/91 (32%), Gaps = 12/91 (13%)
Query: 31 VILGNTAVLRCQI-----PSYM---SEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLY 82
+LG+ C++ P + + D + V + L
Sbjct: 126 AVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLR 185
Query: 83 VFNATPND-GYKSYRCRTVNKITGESQASVF 112
+ N + D G Y CR N I G ++ + +
Sbjct: 186 LANVSERDGGE--YLCRATNFI-GVAEKAFW 213
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif,
immunoglobulin-like domain, growth facto factor
receptor, extracellular; 2.10A {Homo sapiens} PDB:
1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E
1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Length = 231
Score = 39.9 bits (93), Expect = 6e-05
Identities = 19/89 (21%), Positives = 29/89 (32%), Gaps = 17/89 (19%)
Query: 29 HNVILGNTAVLRCQI-----PSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYV 83
H V NT RC P+ W+++ GG V L +
Sbjct: 29 HAVPAANTVKFRCPAGGNPMPTM--------RWLKNGKEFKQEHRIGGYKVRNQHWSLIM 80
Query: 84 FNATPND-GYKSYRCRTVNKITGESQASV 111
+ P+D G +Y C N+ G +
Sbjct: 81 ESVVPSDKG--NYTCVVENEY-GSINHTY 106
Score = 36.4 bits (84), Expect = 0.001
Identities = 19/90 (21%), Positives = 31/90 (34%), Gaps = 11/90 (12%)
Query: 31 VILGNTAVLRCQIPSY-------MSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYV 83
++G C++ S + S D YL ++ L +
Sbjct: 130 TVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLAL 189
Query: 84 FNATPND-GYKSYRCRTVNKITGESQASVF 112
FN T D G Y C+ N I G++ S +
Sbjct: 190 FNVTEADAGE--YICKVSNYI-GQANQSAW 216
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing,
ATP-binding, calcium, calmodulin-binding,
cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A
2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Length = 100
Score = 38.1 bits (89), Expect = 7e-05
Identities = 16/99 (16%), Positives = 31/99 (31%), Gaps = 25/99 (25%)
Query: 31 VILGNTAVLRCQI-----PSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGD---LY 82
+ G + C P +W I ++ G++ + ++ D L
Sbjct: 17 IDEGKVLTVACAFTGEPTPEV--------TWSCGGRKI--HSQEQGRFHIENTDDLTTLI 66
Query: 83 VFNATPND-GYKSYRCRTVNKITGESQASVFQTRLSITG 120
+ + D G Y N+ G A+V + I
Sbjct: 67 IMDVQKQDGG--LYTLSLGNEF-GSDSATV---NIHIRS 99
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL
structural protein; 3.30A {Oryctolagus cuniculus}
Length = 570
Score = 39.4 bits (92), Expect = 1e-04
Identities = 17/82 (20%), Positives = 27/82 (32%), Gaps = 5/82 (6%)
Query: 31 VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPND 90
++G L+ I I V W +D I +D + L A P +
Sbjct: 489 TVVGEEVQLQATIEGAEP--ISVA-WFKDKGEIVRESDNIWISYSENIATLQFSRAEPAN 545
Query: 91 GYKSYRCRTVNKITGESQASVF 112
K Y C+ N+ G +
Sbjct: 546 AGK-YTCQIKNEA-GTQECFAT 565
Score = 38.2 bits (89), Expect = 3e-04
Identities = 13/81 (16%), Positives = 26/81 (32%), Gaps = 6/81 (7%)
Query: 31 VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPND 90
LG C+I + SW +D + + + + + L + +
Sbjct: 113 ETLGFPVAFECRINGS-EPLQV--SWYKDGELLKDDANLQT-SFIHNVATLQILQTDQSH 168
Query: 91 GYKSYRCRTVNKITGESQASV 111
Y C N + G + +S
Sbjct: 169 V-GQYNCSASNPL-GTASSSA 187
Score = 32.9 bits (75), Expect = 0.023
Identities = 12/87 (13%), Positives = 27/87 (31%), Gaps = 18/87 (20%)
Query: 31 VILGNTAVLRCQI-----PSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFN 85
+G L+C++ +W ++ + ++ + L +
Sbjct: 17 AAIGEPITLQCKVDGTPEIRI--------AWYKEHTKLRSAPAYKMQFKN-NVASLVINK 67
Query: 86 ATPND-GYKSYRCRTVNKITGESQASV 111
+D G Y C+ N G +S
Sbjct: 68 VDHSDVG--EYTCKAENS-VGAVASSA 91
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding,
disease MU ectodermal dysplasia, glycoprotein,
heparin-binding, immuno domain, kinase; 1.96A {Homo
sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Length = 100
Score = 36.3 bits (84), Expect = 4e-04
Identities = 20/98 (20%), Positives = 29/98 (29%), Gaps = 17/98 (17%)
Query: 20 KYEINVNYEHNVILGNTAVLRCQI-----PSYMSEYIIVTSWIQDDVNIYLNTDTGGKYV 74
E H V NT RC P+ W+++ GG V
Sbjct: 9 NTEKMEKRLHAVPAANTVKFRCPAGGNPMPTM--------RWLKNGKEFKQEHRIGGYKV 60
Query: 75 VLSSGDLYVFNATPND-GYKSYRCRTVNKITGESQASV 111
L + + P+D G Y C N+ G +
Sbjct: 61 RNQHWSLIMESVVPSDKGN--YTCVVENEY-GSINHTY 95
>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor,
adhesion, structural genomics, NEW YORK STR genomics
research consortium, nysgrc; 1.70A {Homo sapiens} PDB:
3rq3_A 3udw_A* 3ucr_A
Length = 117
Score = 36.4 bits (84), Expect = 5e-04
Identities = 18/100 (18%), Positives = 32/100 (32%), Gaps = 11/100 (11%)
Query: 22 EINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYV------- 74
I + G + +L+C + S ++ V W Q D + + G ++
Sbjct: 6 TIETTGNISAEKGGSIILQCHLSSTTAQVTQVN-WEQQDQLLAICNADLGWHISPSFKDR 64
Query: 75 --VLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVF 112
L + + T ND Y C G +F
Sbjct: 65 VAPGPGLGLTLQSLTVNDT-GEYFCIYHTYPDGTYTGRIF 103
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG
B3P; 2.60A {Homo sapiens}
Length = 304
Score = 37.5 bits (87), Expect = 5e-04
Identities = 17/78 (21%), Positives = 28/78 (35%), Gaps = 17/78 (21%)
Query: 31 VILGNTAVLRCQI-----PSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFN 85
V TA + C P +W +D + + + + G+ L SG L + +
Sbjct: 120 VERTRTATMLCAASGNPDPEI--------TWFKDFLPVDPSA-SNGRIKQLRSGALQIES 170
Query: 86 ATPND-GYKSYRCRTVNK 102
+ D G Y C N
Sbjct: 171 SEETDQG--KYECVATNS 186
Score = 29.4 bits (66), Expect = 0.25
Identities = 16/98 (16%), Positives = 29/98 (29%), Gaps = 21/98 (21%)
Query: 31 VILGNTAVLRCQI-----PSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFN 85
+ G A CQ P +W + + ++ + L +
Sbjct: 18 GVSGGVASFVCQATGDPKPRV--------TWNKKGKKVNSQRFETIEFDESAGAVLRIQP 69
Query: 86 A-TPND-GYKSYRCRTVNKITGESQASVFQTRLSITGK 121
TP D Y C N + GE +L++ +
Sbjct: 70 LRTPRDEN--VYECVAQNSV-GEITVH---AKLTVLRE 101
>2v9t_A Roundabout homolog 1; structural protein-receptor complex,
developmental protein, domain, roundabout, chemotaxis,
LRR domain; 1.70A {Homo sapiens}
Length = 117
Score = 35.9 bits (83), Expect = 6e-04
Identities = 15/83 (18%), Positives = 26/83 (31%), Gaps = 18/83 (21%)
Query: 31 VILGNTAVLRCQI-----PSYMSEYIIVTSWIQDDVNIYLNTDTGGKY-VVLSSGDLYVF 84
V G A L C+ P+ W + + + D + ++L SG L+
Sbjct: 21 VSKGEPATLNCKAEGRPTPTI--------EWYKGGERVETDKDDPRSHRMLLPSGSLFFL 72
Query: 85 NATPNDGYKS----YRCRTVNKI 103
+ Y C N +
Sbjct: 73 RIVHGRKSRPDEGVYVCVARNYL 95
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion;
2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 184
Score = 36.9 bits (85), Expect = 7e-04
Identities = 20/85 (23%), Positives = 32/85 (37%), Gaps = 4/85 (4%)
Query: 30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGD---LYVFNA 86
++ G TA+L C+ S I D + L + ++ V SS L++ N
Sbjct: 94 HINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENL 153
Query: 87 TPNDGYKSYRCRTVNKITGESQASV 111
YRC + G QA +
Sbjct: 154 NMEADPGQYRCNGTSSK-GSDQAII 177
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain,
cytokine decoy RE virus/viral protein, type-1
interferon, soluble A/B-IFNR; HET: EPE; 2.10A
{Ectromelia virus}
Length = 329
Score = 37.1 bits (85), Expect = 7e-04
Identities = 19/105 (18%), Positives = 28/105 (26%), Gaps = 9/105 (8%)
Query: 16 VVKQKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVV 75
+ K I YE L C I I +W +++ + G
Sbjct: 125 IRKPPSCIPETYELGTHDKYGIDLYCGILYAKHYNNI--TWYKNNQEL----IIDGTKYS 178
Query: 76 LSSGDLYVFNATPND-GYKSYRCRTVNKITGESQASVFQTRLSIT 119
S +L + N D G Y C V +T
Sbjct: 179 QSGQNLIIHNPELEDSGR--YDCYVHYDDVRIKNDIVVSRCKILT 221
Score = 32.9 bits (74), Expect = 0.020
Identities = 16/84 (19%), Positives = 28/84 (33%), Gaps = 6/84 (7%)
Query: 31 VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNI---YLNTDTGGKYVVLSSGDLYVFNAT 87
LG +C ++ + D + + + +GDL++ N T
Sbjct: 41 AALGEPFSAKCPPIED---SLLSHRYNDKDNVVNWEKIGKTRRPLNRRVKNGDLWIANYT 97
Query: 88 PNDGYKSYRCRTVNKITGESQASV 111
ND ++ Y C K Q V
Sbjct: 98 SNDSHRRYLCTVTTKNGDCVQGIV 121
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Length = 305
Score = 36.7 bits (85), Expect = 8e-04
Identities = 18/93 (19%), Positives = 30/93 (32%), Gaps = 22/93 (23%)
Query: 29 HNVILGNTAVLRCQI-----PSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSS----G 79
NV + A L C++ P W + I + G KY +
Sbjct: 14 LNVRYQSNATLVCKVTGHPKPIV--------KWYRQGKEIIAD---GLKYRIQEFKGGYH 62
Query: 80 DLYVFNATPNDGYKSYRCRTVNKITGESQASVF 112
L + + T +D Y+ R N+ G +
Sbjct: 63 QLIIASVTDDDATV-YQVRATNQG-GSVSGTAS 93
Score = 31.3 bits (71), Expect = 0.056
Identities = 15/89 (16%), Positives = 26/89 (29%), Gaps = 19/89 (21%)
Query: 31 VILGNTAVLRCQI---PSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGD----LYV 83
+ G ++ P V +W + I D G Y V+ + ++
Sbjct: 116 ALRGEVVSIKIPFSGKPD------PVITWQKGQDLI----DNNGHYQVIVTRSFTSLVFP 165
Query: 84 FNATPNDGYKSYRCRTVNKITGESQASVF 112
D Y N+ G Q +V
Sbjct: 166 NGVERKDAGF-YVVCAKNRF-GIDQKTVE 192
>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C,
C-protein, skeletal muscle fast- isoform, MYBPCF,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 101
Score = 35.4 bits (82), Expect = 9e-04
Identities = 15/86 (17%), Positives = 30/86 (34%), Gaps = 13/86 (15%)
Query: 31 VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGD---LYVFNAT 87
V +G+ + ++ E V W+++ V + +Y G L +
Sbjct: 20 VFVGDRVEMAVEV---SEEGAQVM-WMKNGVELTREDSFKARYRFKKDGKRHILIFSDVV 75
Query: 88 PND-GYKSYRCRTVNKITGESQASVF 112
D G Y+ T G+ +A +
Sbjct: 76 QEDRG--RYQVITNG---GQCEAELI 96
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein;
1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Length = 284
Score = 36.3 bits (84), Expect = 0.001
Identities = 18/97 (18%), Positives = 35/97 (36%), Gaps = 23/97 (23%)
Query: 31 VILGNTAVLRCQI---PSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGD---LYVF 84
+ G L C++ P SW +D + +G KY ++S +++
Sbjct: 204 TLKGADVHLECELQGTPP------FQVSWHKDKREL----RSGKKYKIMSENFLTSIHIL 253
Query: 85 NATPND-GYKSYRCRTVNKITGESQASVFQTRLSITG 120
N D G Y+C+ N + G +++
Sbjct: 254 NVDSADIG--EYQCKASNDV-GSYTCVG---SITLKA 284
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human
coxsackievirus A21, cryo-electron
microscopy,virus-receptor complex, icosahedral virus;
HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3
b.1.1.4 b.1.1.4 b.1.1.4
Length = 450
Score = 36.4 bits (83), Expect = 0.001
Identities = 9/82 (10%), Positives = 22/82 (26%), Gaps = 5/82 (6%)
Query: 26 NYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFN 85
+G LRCQ+ + ++ + + G +
Sbjct: 93 PLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVG-----EPAEVTTTVL 147
Query: 86 ATPNDGYKSYRCRTVNKITGES 107
+ ++ CRT + +
Sbjct: 148 VRRDHHGANFSCRTELDLRPQG 169
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling
protein/receptor, growth regulation/complex, vitamin
K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Length = 195
Score = 35.6 bits (82), Expect = 0.001
Identities = 13/92 (14%), Positives = 26/92 (28%), Gaps = 14/92 (15%)
Query: 31 VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNI--------YLNTDTGGKYVVLSSGDLY 82
G T LRCQ+ + W++D + + + + L
Sbjct: 14 GARGLTGTLRCQLQVQGEPPEV--HWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLR 71
Query: 83 VFNATPND-GYKSYRCRTVNKITGESQASVFQ 113
+ + +D G Y+C +
Sbjct: 72 ITSLQLSDTGQ--YQCLVFLGH-QTFVSQPGY 100
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle
isozymes; IG fold, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.1.1.4
Length = 114
Score = 34.6 bits (80), Expect = 0.002
Identities = 20/98 (20%), Positives = 32/98 (32%), Gaps = 23/98 (23%)
Query: 31 VILGNTAVLRCQI---PSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGD---LYVF 84
V G + L ++ I +W++ I V +S + L +
Sbjct: 19 VRAGESVELFGKVTGTQP------ITCTWMKFRKQI----QESEHMKVENSENGSKLTIL 68
Query: 85 NATPND-GYKSYRCRTVNKITGESQASVFQTRLSITGK 121
A G Y NK+ G QA V L++ K
Sbjct: 69 AARQEHCG--CYTLLVENKL-GSRQAQV---NLTVVDK 100
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody,
immune system; HET: NAG BMA MAN FUC; 2.20A {Homo
sapiens} PDB: 3sgk_C*
Length = 204
Score = 35.2 bits (81), Expect = 0.002
Identities = 17/96 (17%), Positives = 30/96 (31%), Gaps = 14/96 (14%)
Query: 17 VKQKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVL 76
V + + + LRC + + +++Q+
Sbjct: 86 VHIGWLLLQAPRWVFKEEDPIHLRCHSWK--NTALHKVTYLQNGKGRKY---------FH 134
Query: 77 SSGDLYVFNATPND-GYKSYRCRTVNKITGESQASV 111
+ D Y+ AT D G SY CR + S +V
Sbjct: 135 HNSDFYIPKATLKDSG--SYFCRGLVGSKNVSSETV 168
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane,
phosphorylation, immunoglobulin domain, membrane,
glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Length = 192
Score = 35.2 bits (81), Expect = 0.003
Identities = 20/88 (22%), Positives = 30/88 (34%), Gaps = 20/88 (22%)
Query: 31 VILGNTAVLRCQI-----PSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFN 85
G C+ P+ SW ++ I + + S+ +L V N
Sbjct: 16 AERGEEMTFSCRASGSPEPAI--------SWFRNGKLI---EENEKYILKGSNTELTVRN 64
Query: 86 ATPND-GYKSYRCRTVNKITGESQASVF 112
+D G Y CR NK GE + F
Sbjct: 65 IINSDGG--PYVCRATNKA-GEDEKQAF 89
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell
adhesion, transmembrane, disulfide bond, alternative
splicing; HET: NAG; 1.95A {Rattus norvegicus}
Length = 190
Score = 34.8 bits (80), Expect = 0.003
Identities = 16/93 (17%), Positives = 32/93 (34%), Gaps = 22/93 (23%)
Query: 30 NVILGNTAVLRCQI-----PSYMSEYIIVTSWIQDDVNIYLNTD-TGGKYVVLSSGDLYV 83
N G A++ C+ P + W + + ++ + G++ +++ +
Sbjct: 103 NKNEGQDAMMYCKSVGYPHPEW--------MWRKKENGVFEEISNSSGRFFIINKENYTE 154
Query: 84 FN----ATPND-GYKSYRCRTVNKITGESQASV 111
N D G Y C N I G + S
Sbjct: 155 LNIVNLQITEDPGE--YECNATNSI-GSASVST 184
>2y25_A Myomesin; structural protein, sarcomere, M-BAND,
immunoglobulin-like D; 3.50A {Homo sapiens}
Length = 317
Score = 34.9 bits (80), Expect = 0.003
Identities = 13/87 (14%), Positives = 27/87 (31%), Gaps = 17/87 (19%)
Query: 31 VILGNTAVLRCQI-----PSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFN 85
+ G L C + P V+ W++++ + + K+ + +
Sbjct: 234 IQEGKALNLTCNVWGDPPPE-------VS-WLKNEKALASDDHCNLKFEAGRTAYFTING 285
Query: 86 ATPND-GYKSYRCRTVNKITGESQASV 111
+ D G Y NK G +
Sbjct: 286 VSTADSG--KYGLVVKNKY-GSETSDF 309
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 35.1 bits (80), Expect = 0.004
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 7/82 (8%)
Query: 30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPN 89
+V +G+ +LRCQ+ E WI ++ + T K L S L + N T +
Sbjct: 169 SVDVGDDVLLRCQVEGRGLEQA---GWILTELEQ---SATVMKSGGLPSLGLTLANVTSD 222
Query: 90 DGYKSYRCRTVNKITGESQASV 111
K+ C N + G ++ SV
Sbjct: 223 LNRKNVTCWAENDV-GRAEVSV 243
Score = 28.2 bits (62), Expect = 0.69
Identities = 10/56 (17%), Positives = 20/56 (35%), Gaps = 4/56 (7%)
Query: 57 IQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPND-GYKSYRCRTVNKITGESQASV 111
+ + I+ + G L + T + G +Y N G++ AS+
Sbjct: 287 LNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNG--NYTLLAANPF-GQASASI 339
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB:
2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Length = 212
Score = 34.8 bits (80), Expect = 0.004
Identities = 19/99 (19%), Positives = 33/99 (33%), Gaps = 21/99 (21%)
Query: 31 VILGNTAVLRCQI-----PSYMSEYIIVTSWIQDDVNIYLNTDTG--GKYVVLSSGDLYV 83
V TA + C P +W +D + + + + G + S G L +
Sbjct: 120 VERTRTATMLCAASGNPDPEI--------TWFKDFLPVDTSNNNGRIKQLRSESIGALQI 171
Query: 84 FNATPND-GYKSYRCRTVNKITGESQASVFQTRLSITGK 121
+ +D G Y C N G ++ L + G
Sbjct: 172 EQSEESDQGK--YECVATNSA-GTRYSA--PANLYVRGT 205
>2ens_A Advanced glycosylation END product-specific receptor;
beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 96
Score = 33.5 bits (77), Expect = 0.004
Identities = 18/86 (20%), Positives = 27/86 (31%), Gaps = 27/86 (31%)
Query: 31 VILGNTAVLRCQI-----PSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFN 85
V G T L C++ P W++D V + + S L +
Sbjct: 22 VAPGGTVTLTCEVPAQPSPQI--------HWMKDGVPL----------PLPPSPVLILPE 63
Query: 86 ATPND-GYKSYRCRTVNKITGESQAS 110
P D G +Y C + Q S
Sbjct: 64 IGPQDQG--TYSCVATHSS-HGPQES 86
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane,
glycoprotein, signal, complex (immunoglobulin/receptor);
2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB:
1ira_Y* 4dep_B* 1g0y_R
Length = 315
Score = 34.7 bits (79), Expect = 0.004
Identities = 12/101 (11%), Positives = 23/101 (22%), Gaps = 10/101 (9%)
Query: 27 YEHNVILGNTAVLRCQIPSYMSEY---IIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYV 83
++ + + L C + + W +D + + L V
Sbjct: 111 FKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPL----LLDNIHFSGVKDRLIV 166
Query: 84 FNATPND-GYKSYRCRTVNKITGESQASVFQTRLSITGKLK 123
N G Y C G+ + K
Sbjct: 167 MNVAEKHRGN--YTCHASYTYLGKQYPITRVIEFITLEENK 205
Score = 32.4 bits (73), Expect = 0.026
Identities = 13/92 (14%), Positives = 23/92 (25%), Gaps = 15/92 (16%)
Query: 31 VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLN-----------TDTGGKYVVLSSG 79
V LG+ L C + + + W + I + + K
Sbjct: 221 VDLGSQIQLICNV---TGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLIT 277
Query: 80 DLYVFNATPNDGYKSYRCRTVNKITGESQASV 111
L + + C N G A +
Sbjct: 278 VLNISEIESRFYKHPFTCFAKNTH-GIDAAYI 308
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3;
structural genomics, joint center for struct genomics,
JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Length = 112
Score = 33.5 bits (76), Expect = 0.005
Identities = 17/91 (18%), Positives = 31/91 (34%), Gaps = 12/91 (13%)
Query: 30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNI-------YLNTDTGGKYVVLSSGDLY 82
+ I G+ C S S+ + +W D+ + Y + G ++ + L
Sbjct: 21 SAIXGSDVSFTCSAASS-SDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTILR 79
Query: 83 VFNATPND-GYKSYRCRTVNKITGESQASVF 112
+ N G Y+C N G S +
Sbjct: 80 LRNVEFTSEG--XYQCVISNHF-GSSYSVXA 107
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3;
immunoglobulin, VCBP, V-type, V SET, immune system;
1.85A {Branchiostoma floridae}
Length = 250
Score = 34.5 bits (78), Expect = 0.005
Identities = 13/68 (19%), Positives = 21/68 (30%)
Query: 31 VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPND 90
V G T L C V SW++ G Y G +V + + +
Sbjct: 14 VHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKE 73
Query: 91 GYKSYRCR 98
+ + R
Sbjct: 74 SFGDFLGR 81
Score = 32.2 bits (72), Expect = 0.026
Identities = 16/109 (14%), Positives = 29/109 (26%), Gaps = 27/109 (24%)
Query: 31 VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNI--------------------YLNTDTG 70
V GN + C + + +W + +++
Sbjct: 148 VDEGNDITMTCPCTDCANANV---TWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIA 204
Query: 71 GKYVVLSSGDLYVFNATPND-GYKSYRCRTVNKITGESQASVFQTRLSI 118
G+ + +L + A D G C GE A T L +
Sbjct: 205 GRASFSGARNLVIRAAKITDAGR--VWCELATGQ-GELDADRSSTILKV 250
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system;
HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Length = 262
Score = 34.1 bits (78), Expect = 0.006
Identities = 13/72 (18%), Positives = 23/72 (31%), Gaps = 14/72 (19%)
Query: 30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPN 89
+V T L C++ W + G S+ + +A+ N
Sbjct: 12 SVFQEETVTLHCEVLHLPGSSST--QWFLN-----------GTATQTSTPSYRITSASVN 58
Query: 90 DGYKSYRCRTVN 101
D + YRC+
Sbjct: 59 DSGE-YRCQRGL 69
Score = 33.4 bits (76), Expect = 0.010
Identities = 11/82 (13%), Positives = 23/82 (28%), Gaps = 15/82 (18%)
Query: 31 VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPND 90
G LRC Y + + ++ + +L + +
Sbjct: 94 FTEGEPLALRCHAWKDKLVYNV--LYYRNGKAFKFFH---------WNSNLTILKTNISH 142
Query: 91 -GYKSYRCRTVNKITGESQASV 111
G +Y C + K + A +
Sbjct: 143 NG--TYHCSGMGKH-RYTSAGI 161
Score = 29.1 bits (65), Expect = 0.30
Identities = 15/100 (15%), Positives = 31/100 (31%), Gaps = 11/100 (11%)
Query: 22 EINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDL 81
+N + ++ GN L C+ + + + + L +S +
Sbjct: 173 VLNASVTSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGRN-------TSSEY 225
Query: 82 YVFNATPND-GYKSYRCRTVNKITGESQASVFQTRLSITG 120
+ A D G Y C + + S + L + G
Sbjct: 226 QILTARREDSG--LYWCEAATEDGNVLKRSP-ELELQVLG 262
>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet,
STRU genomics, berkeley structural genomics center,
BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A
Length = 137
Score = 33.1 bits (75), Expect = 0.009
Identities = 12/90 (13%), Positives = 24/90 (26%), Gaps = 13/90 (14%)
Query: 31 VILGNTAVLRCQI-----PS----YMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDL 81
+G + L C+ P + + D Y ++ +
Sbjct: 33 RWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTI 92
Query: 82 YVFNATPND-GYKSYRCRTVNKITGESQAS 110
+ D G +Y CR N + +
Sbjct: 93 SIDTLVEEDTG--TYECRASNDP-DRNHLT 119
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer,
immunoglobul domain, muscle protein, thick filament,
contractIle protein; 2.24A {Homo sapiens}
Length = 212
Score = 33.7 bits (77), Expect = 0.009
Identities = 13/90 (14%), Positives = 26/90 (28%), Gaps = 17/90 (18%)
Query: 28 EHNVILGNTAVLRCQI-----PSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLY 82
+ G L C + P V+ W++++ + K+ +
Sbjct: 126 VVTIQEGKALNLTCNVWGDPPPE-------VS-WLKNEKALAQTDHCNLKFEAGRTAYFT 177
Query: 83 VFNATPND-GYKSYRCRTVNKITGESQASV 111
+ + D G Y NK G +
Sbjct: 178 INGVSTADSG--KYGLVVKNKY-GSETSDF 204
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI
cardiomyopathy, disease mutation, disulfide bond,
immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Length = 197
Score = 33.1 bits (76), Expect = 0.011
Identities = 13/96 (13%), Positives = 26/96 (27%), Gaps = 18/96 (18%)
Query: 31 VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGD---LYVFNAT 87
+G+T L + +W + + ++ L + N
Sbjct: 115 GAVGSTLRLHVMYIGRPVPAM---TWFHGQKLL----QNSENITIENTEHYTHLVMKNVQ 167
Query: 88 PND--GYKSYRCRTVNKITGESQASVFQTRLSITGK 121
G Y+ + N G A + + I K
Sbjct: 168 RKTHAGK--YKVQLSNVF-GTVDAIL---DVEIQDK 197
>2edh_A Obscurin; structural genomics, NPPSFA, national project on P
structural and functional analyses, riken structural
genomics/proteomics initiative; NMR {Homo sapiens}
Length = 113
Score = 32.3 bits (74), Expect = 0.012
Identities = 20/95 (21%), Positives = 34/95 (35%), Gaps = 23/95 (24%)
Query: 31 VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGD---LYVFNAT 87
G TAVLRC++ S+ V W + + G ++ + G L +
Sbjct: 31 ATEGATAVLRCEL----SKMAPVE-WWKGHETL----RDGDRHSLRQDGARCELQIRGLV 81
Query: 88 PND-GYKSYRCRTVNKITGESQASVFQTRLSITGK 121
D G Y C + G+ + S L++
Sbjct: 82 AEDAG--EYLC-----MCGKERTS---AMLTVRAM 106
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta
sandwich, immunoglobulin-like, immune system receptor;
1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A
1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Length = 175
Score = 32.9 bits (75), Expect = 0.013
Identities = 15/79 (18%), Positives = 28/79 (35%), Gaps = 14/79 (17%)
Query: 34 GNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPND-GY 92
+ LRC + + +++Q+ + + D ++ AT D G
Sbjct: 103 EDPIHLRCHSWK--NTALHKVTYLQNGKDRKYFH---------HNSDFHIPKATLKDSG- 150
Query: 93 KSYRCRTVNKITGESQASV 111
SY CR + S +V
Sbjct: 151 -SYFCRGLVGSKNVSSETV 168
>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus,
picornavirus, virus/receptor complex; 15.00A {Homo
sapiens} SCOP: i.6.1.1 PDB: 1dgi_R
Length = 302
Score = 33.1 bits (75), Expect = 0.017
Identities = 14/100 (14%), Positives = 29/100 (29%), Gaps = 20/100 (20%)
Query: 31 VILGNTAVLRCQI--PSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLS----------- 77
LG++ L C + P+ ++ +W + + + + S
Sbjct: 12 GFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAAR 71
Query: 78 ------SGDLYVFNATPNDGYKSYRCRTVNKITGESQASV 111
+ L +F D +Y C V G +
Sbjct: 72 LGAELRNASLRMFGLRVEDE-GNYTCLFVTFPQGSRSVDI 110
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 32.9 bits (75), Expect = 0.022
Identities = 19/93 (20%), Positives = 28/93 (30%), Gaps = 11/93 (11%)
Query: 31 VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVL-SSGDLYVFNATPN 89
GN + C + S I W +D + + T K L + + N
Sbjct: 112 SWEGNPINISCDVKSNPPASI---HWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDN 168
Query: 90 D-GYKSYRCRTVNKITGESQASVFQTRLSITGK 121
D G Y C N I G L++
Sbjct: 169 DFGR--YNCTATNHI-GTRFQEY---ILALADV 195
Score = 31.3 bits (71), Expect = 0.063
Identities = 15/93 (16%), Positives = 27/93 (29%), Gaps = 21/93 (22%)
Query: 31 VILGNTAVLRCQI-----PSYMSEYIIVTSWIQDDVNIYLNTD---TGGKYVVLS---SG 79
L C P +W + G+ V S
Sbjct: 12 TYENGQVTLVCDAEGEPIPEI--------TWKRAVDGFTFTEGDKSLDGRIEVKGQHGSS 63
Query: 80 DLYVFNATPNDGYKSYRCRTVNKITGESQASVF 112
L++ + +D + Y C ++I G Q S++
Sbjct: 64 SLHIKDVKLSDSGR-YDCEAASRI-GGHQKSMY 94
>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} PDB: 2yz8_A
Length = 103
Score = 31.5 bits (72), Expect = 0.023
Identities = 23/85 (27%), Positives = 30/85 (35%), Gaps = 19/85 (22%)
Query: 30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGD---LYVFNA 86
V+ G A LRC + S + V W + + G KY + G L V N
Sbjct: 19 EVLEGGAATLRCVLSSVAAP---VK-WCYGNNVL----RPGDKYSLRQEGAMLELVVRNL 70
Query: 87 TPND-GYKSYRCRTVNKITGESQAS 110
P D G Y C G+ S
Sbjct: 71 RPQDSG--RYSCS-----FGDQTTS 88
>1xt5_A Variable region-containing chitin-binding protein 3; innate
immunity, VCBP, primordial antigen receptor, florida
lancelet, amphioxus; 1.15A {Branchiostoma floridae}
Length = 135
Score = 32.1 bits (72), Expect = 0.024
Identities = 13/82 (15%), Positives = 25/82 (30%), Gaps = 2/82 (2%)
Query: 30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPN 89
V G T L C V SW++ G Y G +V + +
Sbjct: 15 EVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYK 74
Query: 90 DGYKSYRCRTVNKITGESQASV 111
+ + + R + + ++
Sbjct: 75 ESFGDFLGRA--SVANLAAPTL 94
>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2;
IG domain, structural protein; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 104
Score = 31.6 bits (72), Expect = 0.026
Identities = 16/78 (20%), Positives = 31/78 (39%), Gaps = 13/78 (16%)
Query: 31 VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGD---LYVFNAT 87
V G+ L ++ + +E V W+++ I +G KY+ S G L + +
Sbjct: 28 VSKGHKIRLTVELADHDAE---VK-WLKNGQEI---QMSGSKYIFESIGAKRTLTISQCS 80
Query: 88 PND-GYKSYRCRTVNKIT 104
D +Y+C +
Sbjct: 81 LADDA--AYQCVVGGEKC 96
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural
plasticity, cell-surface dimerizatio adhesion; HET: NAG
FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4
PDB: 1p53_A*
Length = 265
Score = 32.3 bits (73), Expect = 0.030
Identities = 13/97 (13%), Positives = 27/97 (27%), Gaps = 17/97 (17%)
Query: 23 INVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLY 82
+ + V G ++C+ + + G L
Sbjct: 102 NVILTKPEVSEGTEVTVKCE-----AHPRAKVTL------------NGVPAQPLGPRAQL 144
Query: 83 VFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSIT 119
+ ATP D +S+ C ++ G+ L +
Sbjct: 145 LLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVL 181
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 31.2 bits (71), Expect = 0.031
Identities = 14/85 (16%), Positives = 27/85 (31%), Gaps = 13/85 (15%)
Query: 31 VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGD---LYVFNAT 87
V+ G + C + + W + + ++ G L V A
Sbjct: 20 VLEGESCSFECVLSHESASDPA--MWTVGGKTV----GSSSRFQATRQGRKYILVVREAA 73
Query: 88 PND-GYKSYRCRTVNKITGESQASV 111
P+D G +V +T ++ V
Sbjct: 74 PSDAG--EVVF-SVRGLTSKASLIV 95
>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498;
beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 102
Score = 31.2 bits (71), Expect = 0.033
Identities = 24/95 (25%), Positives = 35/95 (36%), Gaps = 22/95 (23%)
Query: 31 VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGD---LYVFNAT 87
G +A L C++ +E VT W +D + + K V + G L V A
Sbjct: 23 AEAGASATLSCEVAQAQTE---VT-WYKDGKKL----SSSSKVRVEAVGCTRRLVVQQAG 74
Query: 88 PND-GYKSYRCRTVNKITGESQASVFQTRLSITGK 121
+ G Y C G Q S RL + G+
Sbjct: 75 QAEAG--EYSCE-----AGGQQLS---FRLQVAGQ 99
>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin
domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr
virus}
Length = 201
Score = 31.9 bits (72), Expect = 0.035
Identities = 10/82 (12%), Positives = 22/82 (26%), Gaps = 8/82 (9%)
Query: 31 VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYV---FNAT 87
+ + C + ++ ++ W+ + T G + G L V +
Sbjct: 116 FPDFSVLTVTCTVNAFPHPHV---QWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLP 172
Query: 88 PNDGYKSYRCRTVNKITGESQA 109
C N E+
Sbjct: 173 KPWHLP-VTCVGKNDK-EEAHG 192
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 103
Score = 31.1 bits (71), Expect = 0.036
Identities = 20/85 (23%), Positives = 29/85 (34%), Gaps = 15/85 (17%)
Query: 31 VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGD---LYVFNAT 87
V G LRC++ + V W++D I KY V+ G L + A+
Sbjct: 20 VAPGEDVELRCELSRAGTP---VH-WLKDRKAI----RKSQKYDVVCEGTMAMLVIRGAS 71
Query: 88 PND-GYKSYRCRTVNKITGESQASV 111
D G Y C + V
Sbjct: 72 LKDAG--EYTCEVEAS-KSTASLHV 93
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin
domain, fibronectin type III repeat, CE adhesion; 1.80A
{Homo sapiens}
Length = 215
Score = 31.7 bits (72), Expect = 0.036
Identities = 17/94 (18%), Positives = 32/94 (34%), Gaps = 13/94 (13%)
Query: 31 VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGD---LYVFNAT 87
GN + C++ + SW +D + + + ++ L V +
Sbjct: 30 TWEGNQVNITCEV---FAYPSATISWFRDGQLL--PSSNYSNIKIYNTPSASYLEVTPDS 84
Query: 88 PNDGYKSYRCRTVNKITGESQASVFQTRLSITGK 121
ND + +Y C VN+I G+ L
Sbjct: 85 END-FGNYNCTAVNRI-GQESLEF---ILVQADT 113
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain,
vegfr-2, growth factor receptor, VEGF LI
hormone-signaling protein complex, angiogenesis; 3.20A
{Homo sapiens} PDB: 3v6b_R
Length = 772
Score = 32.0 bits (72), Expect = 0.041
Identities = 13/87 (14%), Positives = 24/87 (27%), Gaps = 11/87 (12%)
Query: 28 EHNVILGNTAVLRCQIPSYMS-EYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNA 86
+ T + C+ + + S + V + +D L +
Sbjct: 40 ILTIKANTTLQITCRGQRDLDWLWPNNQSGSEQRVEVTECSDGLFCKT------LTIPKV 93
Query: 87 TPND-GYKSYRCRTVNKITGESQASVF 112
ND G Y+C S V+
Sbjct: 94 IGNDTGA--YKCFYRET-DLASVIYVY 117
>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 103
Score = 30.8 bits (70), Expect = 0.044
Identities = 19/95 (20%), Positives = 32/95 (33%), Gaps = 22/95 (23%)
Query: 31 VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGD---LYVFNAT 87
V TAV C+ VT W + + + GK+ G L +
Sbjct: 20 VEEKGTAVFTCKTE---HPAATVT-WRKGLLEL----RASGKHQPSQEGLTLRLTISALE 71
Query: 88 PND-GYKSYRCRTVNKITGESQASVFQTRLSITGK 121
D +Y C G++Q+ +L + G+
Sbjct: 72 KADSD--TYTCD-----IGQAQSR---AQLLVQGR 96
>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus
receptor, cell adhesion, integrin ligand, glycopr LFA-1
ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo
sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A
1d3e_I 1d3i_I 3tcx_A
Length = 185
Score = 31.6 bits (71), Expect = 0.046
Identities = 10/97 (10%), Positives = 24/97 (24%), Gaps = 12/97 (12%)
Query: 10 FFPMLPVVKQKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDT 69
+ P + +G LRCQ+ + ++ + +
Sbjct: 84 WTPERVELAP-------LPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAV 136
Query: 70 GGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGE 106
G + + + CRT + +
Sbjct: 137 GE-----PAEVTTTVLVRRDHHGAQFSCRTELDLRPQ 168
>1zxq_A ICAM-2, intercellular adhesion molecule-2; immunoglobulin fold,
cell adhesion, glycoprotein, transmembr; HET: NAG; 2.20A
{Homo sapiens} SCOP: b.1.1.3 b.1.1.4
Length = 192
Score = 31.3 bits (70), Expect = 0.054
Identities = 10/76 (13%), Positives = 28/76 (36%)
Query: 31 VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPND 90
V +G + + C++P+ + + + ++ T + + A D
Sbjct: 100 VAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTADRED 159
Query: 91 GYKSYRCRTVNKITGE 106
G++++ C V +
Sbjct: 160 GHRNFSCLAVLDLMSR 175
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor,
CD32, immunoglobulin superfamily, low responder
polymorphism, cell membrane; HET: NAG; 1.50A {Homo
sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C*
2fcb_A
Length = 170
Score = 30.9 bits (70), Expect = 0.059
Identities = 14/96 (14%), Positives = 28/96 (29%), Gaps = 14/96 (14%)
Query: 17 VKQKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVL 76
V ++ + G T +LRC + ++ ++ Q+ + +
Sbjct: 83 VLFEWLVLQTPHLEFQEGETIMLRCHSWK--DKPLVKVTFFQNGKSQKFSH--------- 131
Query: 77 SSGDLYVFNATPND-GYKSYRCRTVNKITGESQASV 111
+ A + G Y C T S V
Sbjct: 132 LDPTFSIPQANHSHSG--DYHCTGNIGYTLFSSKPV 165
>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2edl_A
2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A
Length = 108
Score = 30.4 bits (69), Expect = 0.060
Identities = 18/78 (23%), Positives = 30/78 (38%), Gaps = 15/78 (19%)
Query: 31 VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGD---LYVFNAT 87
G TA L+C++ S+ V W + + GG+Y + G L + + +
Sbjct: 20 ASEGATATLQCEL----SKVAPVE-WKKGPETL----RDGGRYSLKQDGTRCELQIHDLS 70
Query: 88 PND-GYKSYRCRTVNKIT 104
D G Y C + T
Sbjct: 71 VADAG--EYSCMCGQERT 86
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 106
Score = 30.4 bits (69), Expect = 0.067
Identities = 14/85 (16%), Positives = 26/85 (30%), Gaps = 15/85 (17%)
Query: 31 VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGD---LYVFNAT 87
V AV +C++ E + W ++ V + + + G L + +
Sbjct: 20 VKAAEQAVFKCEVS---DEKVTGK-WYKNGVEV----RPSKRITISHVGRFHKLVIDDVR 71
Query: 88 PND-GYKSYRCRTVNKITGESQASV 111
P D G Y A +
Sbjct: 72 PEDEG--DYTFVPDGY-ALSLSAKL 93
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET,
muscle protein; NMR {Caenorhabditis elegans} SCOP:
b.1.1.4 PDB: 1wiu_A
Length = 93
Score = 30.0 bits (68), Expect = 0.070
Identities = 16/93 (17%), Positives = 31/93 (33%), Gaps = 24/93 (25%)
Query: 28 EHNVILGNTAVLRCQI-----PSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGD-- 80
+ + G T L P+ T W D + +V +
Sbjct: 11 KIKIKAGFTHNLEVDFIGAPDPT-------AT-WTVGDSGA----ALAPELLVDAKSSTT 58
Query: 81 -LYVFNATPND-GYKSYRCRTVNKITGESQASV 111
++ +A D G +Y+ + N++ GE +A
Sbjct: 59 SIFFPSAKRADSG--NYKLKVKNEL-GEDEAIF 88
>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural
genomics, PSI-biology, NEW YORK struc genomics research
consortium, nysgrc; 2.30A {Homo sapiens}
Length = 124
Score = 30.3 bits (68), Expect = 0.072
Identities = 20/91 (21%), Positives = 30/91 (32%), Gaps = 14/91 (15%)
Query: 30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQ-DDVNIYLNTDT---GGKYVVLSS----GDL 81
V G T L+C + + W+ I+LN KY +L +
Sbjct: 12 TVEEGQTLTLKCVTSLRKNSSL---QWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQLSI 68
Query: 82 YVFNATPND-GYKSYRCRTVNKITGESQASV 111
V N T D G Y+C + + V
Sbjct: 69 TVPNVTLQDEG--VYKCLHYSDSVSTKEVKV 97
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus}
SCOP: b.1.1.1 b.1.1.3
Length = 176
Score = 30.7 bits (69), Expect = 0.082
Identities = 16/91 (17%), Positives = 29/91 (31%), Gaps = 10/91 (10%)
Query: 30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDT------GGKYVVLSSGDLYV 83
LG+ L M++ I W + + G + +L++GDL +
Sbjct: 7 WGALGHGINLNIP-NFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKI 65
Query: 84 FNATPND-GYKSYRCRTVNKITGESQASVFQ 113
N T +D G +Y +
Sbjct: 66 KNLTRDDSG--TYNVTVYSTNGTRILNKALD 94
>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like
folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A
2dyp_D 2otp_A 3q2c_A
Length = 198
Score = 30.6 bits (69), Expect = 0.087
Identities = 18/81 (22%), Positives = 28/81 (34%), Gaps = 9/81 (11%)
Query: 31 VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPND 90
+ G+ LRCQ EY ++ T + V G + + T
Sbjct: 16 ITQGSPVTLRCQGGQETQEYR----LYREKKTAPWITRIPQELV--KKGQFPIPSITWEH 69
Query: 91 -GYKSYRCRTVNKITGESQAS 110
G YRC + G S++S
Sbjct: 70 TG--RYRCYYGSDTAGRSESS 88
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1,
isoform 2; hydrolase, immunoglobulin domain, nucleus,
protease; 2.80A {Homo sapiens}
Length = 218
Score = 30.6 bits (69), Expect = 0.10
Identities = 16/87 (18%), Positives = 22/87 (25%), Gaps = 26/87 (29%)
Query: 31 VILGNTAVLRCQI-----PSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFN 85
V+ G L C+ Y W + + I + +L
Sbjct: 30 VLAGQFVKLCCRATGHPFVQY--------QWFKMNKEIPNGN----------TSELIFNA 71
Query: 86 ATPND-GYKSYRCRTVNKITGESQASV 111
D G Y CR N T E
Sbjct: 72 VHVKDAG--FYVCRVNNNFTFEFSQWS 96
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative
splicing, cell adhesion, cell membrane, glycoprotein,
HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R
3epc_R* 3epd_R* 3epf_R*
Length = 221
Score = 30.4 bits (68), Expect = 0.12
Identities = 17/109 (15%), Positives = 32/109 (29%), Gaps = 20/109 (18%)
Query: 22 EINVNYEHNVILGNTAVLRCQI--PSYMSEYIIVTSWIQDDV--NIYLNTDTGGKYVV-- 75
+ + LG++ L C + P+ ++ +W + ++ + T G
Sbjct: 2 VVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSES 61
Query: 76 -----------LSSGD--LYVFNATPNDGYKSYRCRTVNKITGESQASV 111
D L +F D SY C V G +
Sbjct: 62 KRLEFVAARLGAELRDASLRMFGLRVEDE-GSYTCLFVTFPQGSRSVDI 109
>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond,
glycoprotein, immunoglobulin membrane, transmembrane;
HET: NAG; 2.21A {Mus musculus}
Length = 108
Score = 29.4 bits (66), Expect = 0.15
Identities = 13/76 (17%), Positives = 27/76 (35%), Gaps = 14/76 (18%)
Query: 31 VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDT----GGKYVVLSSGD----LY 82
V+ G TA+L C++ + + W D + ++ + +
Sbjct: 18 VVEGGTAILTCRVDQNDNTSL---QWSNPAQQTLYFDDKKALRDNRIELVRASWHELSIS 74
Query: 83 VFNATPND-GYKSYRC 97
V + + +D G Y C
Sbjct: 75 VSDVSLSDEGQ--YTC 88
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 104
Score = 29.3 bits (66), Expect = 0.16
Identities = 17/86 (19%), Positives = 26/86 (30%), Gaps = 17/86 (19%)
Query: 31 VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGD---LYVFNAT 87
VL C++ S +W +D + + VV G L + A
Sbjct: 22 FTTSERVVLTCEL----SRVDFPATWYKDGQKV----EESELLVVKMDGRKHRLILPEAK 73
Query: 88 PND-GYKSYRCRTVNKITGESQASVF 112
D G + CRT + V
Sbjct: 74 VQDSG--EFECRTEGV---SAFFGVT 94
>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody,
immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL
SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2
b.1.1.2 PDB: 2qej_A*
Length = 214
Score = 29.8 bits (67), Expect = 0.19
Identities = 16/71 (22%), Positives = 25/71 (35%), Gaps = 7/71 (9%)
Query: 31 VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNT----DTGGKYVVLSSGDLYVFNA 86
++LG+ A L C + + +W + D G Y V S L
Sbjct: 16 LLLGSEANLTCTLTGLRDASGVTFTWTPSSGKSAVQGPPERDLCGCYSVSSV--LPGCAE 73
Query: 87 TPNDGYKSYRC 97
N G K++ C
Sbjct: 74 PWNHG-KTFTC 83
>2bb3_A Cobalamin biosynthesis precorrin-6Y methylase (CB; beta,
alpha-beta-alpha sandwich, structural genomics, PSI, P
structure initiative; HET: SAH; 2.27A {Archaeoglobus
fulgidus} SCOP: c.90.1.1
Length = 221
Score = 29.3 bits (66), Expect = 0.26
Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 2/54 (3%)
Query: 28 EHNVILGNTAVLRCQIPSYMSE-YIIVTSWIQDDVNIYLNTDTGGKYVVLSSGD 80
VI G+ L I+ S+ D++ + + V+S+GD
Sbjct: 46 RAEVIYGSRRALE-LAGVVDDSRARILRSFKGDEIRRIMEEGREREVAVISTGD 98
>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG
superfamily, rossmann fold, metal mediated protein
interf immune system; HET: NAG; 3.30A {Homo sapiens}
SCOP: b.1.1.3 b.1.1.4
Length = 291
Score = 29.4 bits (65), Expect = 0.26
Identities = 10/89 (11%), Positives = 23/89 (25%), Gaps = 5/89 (5%)
Query: 31 VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPND 90
+G LRCQ+ + ++ + + G + +
Sbjct: 98 QPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGE-----PAEVTTTVLVRRDH 152
Query: 91 GYKSYRCRTVNKITGESQASVFQTRLSIT 119
++ CRT + + T
Sbjct: 153 HGANFSCRTELDLRPQGLELFENTSAPYQ 181
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain,
SLOW-type myosin-binding protein C, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 100
Score = 28.5 bits (64), Expect = 0.30
Identities = 20/85 (23%), Positives = 29/85 (34%), Gaps = 16/85 (18%)
Query: 31 VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGD---LYVFNAT 87
V LG L+C+I SE I W ++ + + + V+ G L + NA
Sbjct: 19 VNLGKEICLKCEI----SENIPGK-WTKNGLPV----QESDRLKVVQKGRIHKLVIANAL 69
Query: 88 PND-GYKSYRCRTVNKITGESQASV 111
D G Y A V
Sbjct: 70 TEDEG--DYVFAPDAY-NVTLPAKV 91
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil,
immunoglobulin, immune system, extracellular; HET: NAG;
3.10A {Homo sapiens} PDB: 3o4o_B*
Length = 349
Score = 29.5 bits (65), Expect = 0.31
Identities = 18/111 (16%), Positives = 33/111 (29%), Gaps = 11/111 (9%)
Query: 12 PMLPVVKQKYEINVNYEHNVILGNTAVLRCQI-PSYMSEYIIVTSWIQDDVNIYLNTDTG 70
P V + N + + G ++ C + S++ + W D T
Sbjct: 219 PKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDV 278
Query: 71 GKYVVLS---------SGDLYVFNATPNDGYKSYRCRTVNKITGESQASVF 112
+S + L + T D +SY C + GE +
Sbjct: 279 TINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAK-GEVAKAAK 328
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW-
type/skeletal muscle SLOW-isoform, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Length = 103
Score = 28.4 bits (64), Expect = 0.32
Identities = 18/86 (20%), Positives = 27/86 (31%), Gaps = 15/86 (17%)
Query: 31 VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGD---LYVFNAT 87
G L C++ SE W ++ I +Y + G L + AT
Sbjct: 19 AYCGERVELECEV----SEDDANVKWFKNGEEIIPGPK--SRYRIRVEGKKHILIIEGAT 72
Query: 88 PND-GYKSYRCRTVNKITGESQASVF 112
D Y T G+S A +
Sbjct: 73 KADAA--EYSVMTTG---GQSSAKLS 93
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily.,
cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Length = 231
Score = 29.0 bits (64), Expect = 0.39
Identities = 16/99 (16%), Positives = 29/99 (29%), Gaps = 18/99 (18%)
Query: 30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD---VNIYLNTDTGGK-------------- 72
V+ G + +L C Y++ + G +
Sbjct: 11 EVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPP 70
Query: 73 YVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASV 111
Y + S G L + A D + Y C G ++A+
Sbjct: 71 YQLDSQGRLVLAEAQVGDE-RDYVCVVRAGAAGTAEATA 108
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB:
3bp5_B 3rnq_B 3bov_A 3rnk_B
Length = 202
Score = 28.5 bits (63), Expect = 0.54
Identities = 10/86 (11%), Positives = 26/86 (30%), Gaps = 7/86 (8%)
Query: 31 VILGNTAVLRCQIPSY----MSEYIIVTSWIQDDVNIYLN-TDTGGKYVVLSSGDLYVFN 85
V +G++ L C + +++D ++ + + L ++ +
Sbjct: 14 VDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPS 73
Query: 86 ATPNDGYKSYRCRTVNKITGESQASV 111
D YRC + +
Sbjct: 74 VQVRDS-GQYRCLVICG-AAWDYKYL 97
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed
death-1 ligand 1, complex, costimulatory, immune system;
2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Length = 222
Score = 28.0 bits (62), Expect = 0.84
Identities = 16/100 (16%), Positives = 29/100 (29%), Gaps = 20/100 (20%)
Query: 31 VILGNTAVLRCQIPSYMSEYI--IVTSWIQDDVNIYL-------NTDTGGKY-------- 73
V G+ + C+ P + ++ W +D NI Y
Sbjct: 13 VEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLK 72
Query: 74 --VVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASV 111
+ L + L + + D YRC + +V
Sbjct: 73 DQLSLGNAALQITDVKLQDA-GVYRCMISYGGADYKRITV 111
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton,
immunoglobulin domain, muscle protein, phosphorylation,
repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A
1tiu_A 2rq8_A
Length = 93
Score = 26.9 bits (60), Expect = 0.88
Identities = 12/78 (15%), Positives = 22/78 (28%), Gaps = 14/78 (17%)
Query: 31 VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGD---LYVFNAT 87
V +G TA ++ SE + W + ++ G L + N
Sbjct: 17 VFVGETAHFEIEL----SEPDVHGQWKLKGQPL----AASPDCEIIEDGKKHILILHNCQ 68
Query: 88 PND-GYKSYRCRTVNKIT 104
G + N +
Sbjct: 69 LGMTG--EVSFQAANTKS 84
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular
adhesion, ligand-independent DIME mutational analysis,
transferase; HET: EPE; 1.96A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.4
Length = 182
Score = 27.5 bits (61), Expect = 0.95
Identities = 9/86 (10%), Positives = 15/86 (17%), Gaps = 16/86 (18%)
Query: 29 HNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATP 88
V L C+ I W + I +
Sbjct: 108 LAVPPNAPFQLSCEAVGPPEPVTI--VWWRGTTKIGGPAP----------SPSVLNVTGV 155
Query: 89 ND-GYKSYRCRTVNKITGESQASVFQ 113
+ C N G + +
Sbjct: 156 TQST--MFSCEAHNLK-GLASSRTAT 178
Score = 26.3 bits (58), Expect = 2.4
Identities = 16/89 (17%), Positives = 28/89 (31%), Gaps = 19/89 (21%)
Query: 31 VILGNTAVLRCQI---PSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSS----GDLYV 83
V G L C + W++D + + Y+ +S G L +
Sbjct: 14 VSQGQPVKLNCSVEGMEE------PDIQWVKDGAVV---QNLDQLYIPVSEQHWIGFLSL 64
Query: 84 FNATPND-GYKSYRCRTVNKITGESQASV 111
+ +D G Y C+ + E V
Sbjct: 65 KSVERSDAG--RYWCQVEDGGETEISQPV 91
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein
complex, growth factor-receptor complex, TRA hormone
complex; HET: NDG NAG; 2.30A {Homo sapiens}
Length = 289
Score = 27.7 bits (61), Expect = 1.1
Identities = 15/85 (17%), Positives = 26/85 (30%), Gaps = 12/85 (14%)
Query: 28 EHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNAT 87
E + + +T VL C + + W + + + S L + N T
Sbjct: 9 ELVLNVSSTFVLTCSGSAPV-------VWERM--SQEPPQEMAKAQDGTFSSVLTLTNLT 59
Query: 88 PND-GYKSYRCRTVNKITGESQASV 111
D G Y C + E+
Sbjct: 60 GLDTGE--YFCTHNDSRGLETDERK 82
>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion;
2.40A {Homo sapiens}
Length = 145
Score = 27.1 bits (59), Expect = 1.2
Identities = 16/92 (17%), Positives = 28/92 (30%), Gaps = 14/92 (15%)
Query: 15 PVVKQKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNI-YLNTDT---G 70
+ Q + V+ G T VL+CQ+ + W Y
Sbjct: 34 INLSQDDSQPWTSDETVVAGGTVVLKCQVKDH---EDSSLQWSNPAQQTLYFGEKRALRD 90
Query: 71 GKYVVLSSGD----LYVFNATPND-GYKSYRC 97
+ +++S + + N D G Y C
Sbjct: 91 NRIQLVTSTPHELSISISNVALADEGE--YTC 120
>2pnd_A V-SET and immunoglobulin domain containing 4; complement receptor,
IG-like domain, immune system; 1.00A {Mus musculus} PDB:
2icc_A 2ice_S* 2icf_S*
Length = 119
Score = 26.8 bits (59), Expect = 1.3
Identities = 15/97 (15%), Positives = 25/97 (25%), Gaps = 18/97 (18%)
Query: 31 VILGNTAVLRCQIPSYMSEYIIVTSWI----QDDVNIYLNTDTGGKYVV----------- 75
++C ++ W+ D V I+L TG
Sbjct: 13 GTWKGDVKIQCIYDPLRGYRQVLVKWLVRHGSDSVTIFLRDSTGDHIQQAKYRGRLKVSH 72
Query: 76 LSSGD--LYVFNATPNDGYKSYRCRTVNKITGESQAS 110
GD L + +D Y C + +Q
Sbjct: 73 KVPGDVSLQINTLQMDDRN-HYTCEVTWQTPDGNQVI 108
>1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune
system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A
Length = 110
Score = 26.3 bits (58), Expect = 1.8
Identities = 20/105 (19%), Positives = 32/105 (30%), Gaps = 21/105 (20%)
Query: 33 LGNTAVLRCQI--PSYMSEYIIVTSWI-QDDVNIYLNTDTGGKY----------VVLSSG 79
TA L CQ S +V W Q+++ + K+ S
Sbjct: 8 FNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSD 67
Query: 80 D--LYVFNATPND-GYKSYRCRTVNKITGESQASVFQT--RLSIT 119
L + N D G Y+C ++ + Q LS+
Sbjct: 68 SWTLRLHNLQIKDKG--LYQCI-IHHKKPTGMIRIHQMNSELSVL 109
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune
system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A
4f8q_A
Length = 226
Score = 27.0 bits (59), Expect = 2.0
Identities = 10/42 (23%), Positives = 17/42 (40%)
Query: 31 VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGK 72
++G A L C + MS + W+ + +N GK
Sbjct: 16 AMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGK 57
>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation
marker blast-1, BCM1 surface antigen, leukocyte antigen
MEM-102, TCT.1; NMR {Homo sapiens}
Length = 121
Score = 26.0 bits (57), Expect = 2.4
Identities = 14/92 (15%), Positives = 26/92 (28%), Gaps = 12/92 (13%)
Query: 30 NVILGNTAVLRCQIPS---------YMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGD 80
V+ G+ L + + + W + + G + SG
Sbjct: 15 TVVSGSNVTLNISESLPENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRLDPQSGA 74
Query: 81 LYVFNATPND-GYKSYRCRTVNKITGESQASV 111
LY+ D Y R + K E + +
Sbjct: 75 LYISKVQKEDNST--YIMRVLKKTGNEQEWKI 104
>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system;
1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E
3csp_A 1py9_A
Length = 139
Score = 26.4 bits (58), Expect = 2.4
Identities = 17/101 (16%), Positives = 34/101 (33%), Gaps = 23/101 (22%)
Query: 31 VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVV--------------- 75
++G+ A L C+I + + W + + ++ GK
Sbjct: 18 ALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLK 77
Query: 76 --LSSGD--LYVFNATPND-GYKSYRCRTVNKITGESQASV 111
+ G L + N +D G Y C + + +A+V
Sbjct: 78 ESIGEGKVALRIQNVRFSDEG--GYTCF-FRDHSYQEEAAV 115
>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A
1r70_B 3cm9_A
Length = 475
Score = 26.8 bits (59), Expect = 2.5
Identities = 16/76 (21%), Positives = 25/76 (32%), Gaps = 7/76 (9%)
Query: 31 VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNT----DTGGKYVVLSSGDLYVFNA 86
++LG+ A L C + + +W + D G Y V S L
Sbjct: 259 LLLGSEANLTCTLTGLRDASGVTFTWTPSSGKSAVQGPPERDLCGCYSVSSV--LPGCAE 316
Query: 87 TPNDGYKSYRCRTVNK 102
N G K++ C
Sbjct: 317 PWNHG-KTFTCTAAYP 331
>3noi_A Natural cytotoxicity triggering receptor 3; immune system, innate
immunity, immunoglobulin-like I2 type natural killer
cell activation; HET: 1PG; 1.84A {Homo sapiens} PDB:
3pv6_B*
Length = 120
Score = 26.1 bits (57), Expect = 2.7
Identities = 19/110 (17%), Positives = 35/110 (31%), Gaps = 21/110 (19%)
Query: 28 EHNVILGNTAVLRCQI-PSYMSEYIIVTSWIQDDVN----IYLNTDTGGKYVVLSSGD-- 80
E + G++A L C S I +W +D+V + T + +
Sbjct: 16 EIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEVVPGKEVRNGTPEFRGRLAPLASSRF 75
Query: 81 -------LYVFNATPNDGYKSYRCRTVNKITGESQASVFQ--TRLSITGK 121
L++ + +D Y CR + TRL + +
Sbjct: 76 LHDHQAELHIRDVRGHDA-SIYVCR----VEVLGLGVGTGNGTRLVVEKE 120
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor
tyrosine kinase, growth factor cytoki dimerization,
transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Length = 524
Score = 26.6 bits (58), Expect = 2.9
Identities = 14/86 (16%), Positives = 25/86 (29%), Gaps = 21/86 (24%)
Query: 28 EHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNAT 87
+ V +G+ L C P ++ W + ++ + A
Sbjct: 45 DLIVRVGDEIRLLCTDPGFV-------KWTFEILDETNEN---------KQNEWITEKAE 88
Query: 88 PND-GYKSYRCRTVNKITGESQASVF 112
+ G Y C NK + VF
Sbjct: 89 ATNTGK--YTC--TNKHGLSNSIYVF 110
>2qsq_A Carcinoembryonic antigen-related cell adhesion MO; glycoprotein,
GPI-anchor, immunoglobulin DOMA lipoprotein, membrane;
1.95A {Homo sapiens} PDB: 2qst_A 2ver_N* 2gk2_A
Length = 111
Score = 25.7 bits (56), Expect = 3.2
Identities = 9/83 (10%), Positives = 23/83 (27%), Gaps = 2/83 (2%)
Query: 29 HNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATP 88
HN+ + + + ++ G+ ++ + L + N
Sbjct: 23 HNL-PQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPNASLLIQNIIQ 81
Query: 89 NDGYKSYRCRTVNKITGESQASV 111
ND Y + +A+
Sbjct: 82 NDA-GFYTLHVIKSDLVNEEATG 103
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding
domain of CD48, immune system; HET: NAG; 2.60A {Rattus
norvegicus}
Length = 180
Score = 25.6 bits (56), Expect = 4.4
Identities = 12/93 (12%), Positives = 33/93 (35%), Gaps = 13/93 (13%)
Query: 30 NVILGNTAVLRCQIPS----------YMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSG 79
N I G+ L + + I+ + ++ + + ++G
Sbjct: 10 NAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNG 69
Query: 80 DLYVFNATPND-GYKSYRCRTVNKITGESQASV 111
L ++N + D G Y R +++ + + ++
Sbjct: 70 ALRIYNVSKEDRG--DYYMRMLHETEDQWKITM 100
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system;
3.00A {Homo sapiens}
Length = 193
Score = 25.3 bits (55), Expect = 6.2
Identities = 19/97 (19%), Positives = 30/97 (30%), Gaps = 13/97 (13%)
Query: 30 NVILGNTAVLRCQIP------------SYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLS 77
N ILG + L + P + S IV + N G +
Sbjct: 9 NGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQ 68
Query: 78 SGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQT 114
S L + N D SYR + K + + + +
Sbjct: 69 SYSLQLSNLKMEDT-GSYRAQISTKTSAKLSSYTLRI 104
>3u5w_A Putative uncharacterized protein; ssgcid, seattle structural
genomics center for infectious DI FMN-binding protein;
2.05A {Brucella melitensis biovar abortus} PDB: 3u0i_A
Length = 148
Score = 25.2 bits (55), Expect = 6.4
Identities = 7/48 (14%), Positives = 14/48 (29%)
Query: 50 YIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRC 97
I+ ++ + Y T G K + D + +R
Sbjct: 36 IIVPMTFRFSGGSFYSFTTDGQKTNAMRKNDAICILFDQIESQTKWRT 83
>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell
immunoglobulin mucin, signaling protein; 1.95A {Mus
musculus} PDB: 3kaa_A*
Length = 109
Score = 24.9 bits (54), Expect = 6.8
Identities = 17/85 (20%), Positives = 23/85 (27%), Gaps = 17/85 (20%)
Query: 31 VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTD----TGGKYVVLSSGDLYVFNA 86
V +G A L C S ++ W + T+ T + V Y
Sbjct: 6 VEVGKNAYLPCSYTLPTSGTLVPMCWGKGFCPWSQCTNELLRTDERNVTYQKSSRYQLKG 65
Query: 87 TPNDGYKS-------------YRCR 98
N G S Y CR
Sbjct: 66 DLNKGDVSLIIKNVTLDDHGTYCCR 90
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody,
immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S
3cm9_S 3chn_J 3cm9_J
Length = 585
Score = 25.3 bits (54), Expect = 7.5
Identities = 14/94 (14%), Positives = 29/94 (30%), Gaps = 16/94 (17%)
Query: 30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDV----------NIYLNTDTGGKYVVLSSG 79
N + GN+ + C P W + Y+++ G+ + +
Sbjct: 11 NSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFP 70
Query: 80 DLYVF-----NATPNDGYKSYRCRTVNKITGESQ 108
+ F + +D + Y+C G S
Sbjct: 71 ENGTFVVNIAQLSQDDSGR-YKCGLGINSRGLSF 103
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain,
cell adhesion, cell junction, glycoprotein,
immunoglobulin domain, membrane; HET: NAG FUC; 2.19A
{Mus musculus} PDB: 3mj7_A* 3mj9_A*
Length = 268
Score = 25.2 bits (54), Expect = 8.6
Identities = 14/92 (15%), Positives = 30/92 (32%), Gaps = 22/92 (23%)
Query: 31 VILGNTAVLRCQIPSYMSEYIIVTSWIQDD--------VNIYLNTDT--GGKY------- 73
V +G + ++ C + +++ W+ V Y + + G++
Sbjct: 17 VHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLV 76
Query: 74 --VVLSSGDLYVFNATPND-GYKSYRCRTVNK 102
+ G L + + D G Y C K
Sbjct: 77 GDTFHNDGSLLLQDVQKADEG--IYTCEIRLK 106
Score = 24.8 bits (53), Expect = 9.8
Identities = 17/105 (16%), Positives = 36/105 (34%), Gaps = 27/105 (25%)
Query: 31 VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVN----------------IYLNTDTGGKYV 74
V +G+T +RC I S + + +W+ + + +
Sbjct: 130 VRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNR 189
Query: 75 VLSSGD-------LYVFNATPND-GYKSYRCRTVNKITGESQASV 111
V +GD + + +D G Y C ++ ES+ ++
Sbjct: 190 VDLTGDISRNDGSIKLQTVKESDQGI--YTC-SIYVGKLESRKTI 231
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.135 0.400
Gapped
Lambda K H
0.267 0.0526 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,858,058
Number of extensions: 96653
Number of successful extensions: 286
Number of sequences better than 10.0: 1
Number of HSP's gapped: 254
Number of HSP's successfully gapped: 153
Length of query: 129
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 46
Effective length of database: 4,384,350
Effective search space: 201680100
Effective search space used: 201680100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.3 bits)