RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5694
(129 letters)
>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR
{Human (Homo sapiens), FGFR2a [TaxId: 9606]}
Length = 97
Score = 32.9 bits (74), Expect = 0.002
Identities = 17/83 (20%), Positives = 27/83 (32%), Gaps = 5/83 (6%)
Query: 29 HNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATP 88
H V NT RC + W+++ GG V L + + P
Sbjct: 15 HAVPAANTVKFRCPAGGNPMPTM---RWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVP 71
Query: 89 NDGYKSYRCRTVNKITGESQASV 111
+D +Y C N+ G +
Sbjct: 72 SDK-GNYTCVVENEY-GSINHTY 92
>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human
(Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 29.9 bits (66), Expect = 0.033
Identities = 15/96 (15%), Positives = 28/96 (29%), Gaps = 8/96 (8%)
Query: 31 VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPND 90
V C + + I +W +DD ++T+ + L+ A D
Sbjct: 14 SSANEIDVRPCPLNPNEHKGTI--TWYKDDSKTPVSTEQ-ASRIHQHKEKLWFVPAKVED 70
Query: 91 GYKSYRCRTVNKITGESQASVFQTRLSITGKLKSLC 126
Y C N + + + +LC
Sbjct: 71 SGH-YYCVVRNS-SYCLRIKI---SAKFVENEPNLC 101
>d1ow0a1 b.1.1.2 (A:242-342) Immunoglobulin heavy chain alpha
constant domain 2, CH2-alpha {Human (Homo sapiens)
[TaxId: 9606]}
Length = 101
Score = 28.5 bits (63), Expect = 0.12
Identities = 16/72 (22%), Positives = 26/72 (36%), Gaps = 7/72 (9%)
Query: 31 VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNT----DTGGKYVVLSSGDLYVFNA 86
++LG+ A L C + + +W + D G Y V S L A
Sbjct: 15 LLLGSEANLTCTLTGLRDASGVTFTWTPSSGKSAVQGPPERDLCGCYSVSSV--LPG-CA 71
Query: 87 TPNDGYKSYRCR 98
P + K++ C
Sbjct: 72 EPWNHGKTFTCT 83
>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 92
Score = 25.6 bits (55), Expect = 0.99
Identities = 15/78 (19%), Positives = 22/78 (28%), Gaps = 6/78 (7%)
Query: 30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPN 89
G AV+ C + S + II +D + L +
Sbjct: 12 EFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNN-----YLQIRGIKKT 66
Query: 90 DGYKSYRCRTVNKITGES 107
D +YRC GE
Sbjct: 67 D-EGTYRCEGRILARGEI 83
>d1xiwa_ b.1.1.4 (A:) CD3 epsilon chain ectodomain fragment {Human
(Homo sapiens) [TaxId: 9606]}
Length = 91
Score = 25.4 bits (55), Expect = 1.3
Identities = 19/68 (27%), Positives = 24/68 (35%), Gaps = 7/68 (10%)
Query: 32 ILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDG 91
I G T +L C P Y I+ W +D NI + D L F+ G
Sbjct: 8 ISGTTVILTC--PQYPGSEIL---WQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSG 62
Query: 92 YKSYRCRT 99
Y Y C
Sbjct: 63 Y--YVCYP 68
>d1hy5a_ a.24.11.1 (A:) YopE {Yersinia pestis [TaxId: 632]}
Length = 120
Score = 25.3 bits (55), Expect = 1.6
Identities = 5/29 (17%), Positives = 10/29 (34%)
Query: 100 VNKITGESQASVFQTRLSITGKLKSLCTS 128
+N + E + +G L+ T
Sbjct: 22 LNSLDAEMLQKNHDQFATGSGPLRGSITQ 50
>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules
[TaxId: 9606]}
Length = 91
Score = 24.0 bits (51), Expect = 3.6
Identities = 10/81 (12%), Positives = 19/81 (23%), Gaps = 6/81 (7%)
Query: 31 VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPND 90
V G +A C + Q + + + + +D
Sbjct: 11 VYEGESARFSCDTDGEPVPTVTWLRKGQ----VLSTSARHQVTTTKYKSTFEISSVQASD 66
Query: 91 GYKSYRCRTVNKITGESQASV 111
Y N G+ +A
Sbjct: 67 EGN-YSVVVENSE-GKQEAEF 85
>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 105
Score = 23.7 bits (50), Expect = 5.9
Identities = 13/101 (12%), Positives = 32/101 (31%), Gaps = 13/101 (12%)
Query: 30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYV---------VLSSGD 80
+ A L C + E + Q + + L +G + + +
Sbjct: 5 TKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNN 64
Query: 81 --LYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSIT 119
+ + P+D +Y C V K ++ ++++
Sbjct: 65 LSIVILALRPSD-EGTYECV-VLKYEKDAFKREHLAEVTLS 103
>d1h54a1 a.102.1.4 (A:269-753) Lactobacillus maltose phosphorylase,
central domain {Lactobacillus brevis [TaxId: 1580]}
Length = 485
Score = 24.4 bits (52), Expect = 6.2
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 1 MKMKDTFLLFFPMLPVVKQKYEINVNYEHNVI 32
M+++D L + P LP Y + +I
Sbjct: 421 MRVRDGQLHYAPFLPKTWTSYTFRQVFRDRLI 452
>d1ks6a_ g.7.1.3 (A:) TGF-beta type II receptor extracellular
domain {Chicken (Gallus gallus) [TaxId: 9031]}
Length = 107
Score = 23.3 bits (50), Expect = 7.2
Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 41 CQIPSY--MSEYIIVTSWIQDDVNIYLNT 67
C I S + + W ++D N+ L T
Sbjct: 26 CNITSICEKNNEVCAAVWRRNDENVTLET 54
>d1m9za_ g.7.1.3 (A:) TGF-beta type II receptor extracellular
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 105
Score = 23.3 bits (50), Expect = 7.9
Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 41 CQIPSY--MSEYIIVTSWIQDDVNIYLNT 67
C I S + + V W ++D NI L T
Sbjct: 23 CSITSICEKPQEVCVAVWRKNDENITLET 51
>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 110
Score = 23.3 bits (49), Expect = 9.3
Identities = 13/105 (12%), Positives = 27/105 (25%), Gaps = 17/105 (16%)
Query: 30 NVILGNTAVLRCQIPSYMSEYIIVTSW------------IQDDVNIYLNTD---TGGKYV 74
TA L CQ + ++ + + + + G
Sbjct: 5 QAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSF 64
Query: 75 VLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSIT 119
S L + N D Y+C ++ + Q ++
Sbjct: 65 DSDSWTLRLHNLQIKDK-GLYQCI-IHHKKPTGMIRIHQMNSELS 107
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.135 0.400
Gapped
Lambda K H
0.267 0.0491 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 459,093
Number of extensions: 19167
Number of successful extensions: 44
Number of sequences better than 10.0: 1
Number of HSP's gapped: 44
Number of HSP's successfully gapped: 15
Length of query: 129
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 53
Effective length of database: 1,364,116
Effective search space: 72298148
Effective search space used: 72298148
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (22.8 bits)