BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5696
(125 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2EDX|A Chain A, Solution Structures Of The Fn3 Domain Of Human Receptor-
Type Tyrosine-Protein Phosphatase F
Length = 134
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 59/113 (52%), Gaps = 5/113 (4%)
Query: 16 TILTMYNISMPSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYP--AEDWY 73
TI S PS PP+ + C S+ STT++++W P ++RNG+I Y V Y ED
Sbjct: 8 TIEARTAQSTPSAPPQKVMCVSMGSTTVRVSWVPPPADSRNGVITQYSVAYEAVDGEDRG 67
Query: 74 ES-LESDTKDTSSLSASLQGLGKFTNYSIQVMAFTQAGDGTLSDVIFCRTLED 125
++ +++ SS L GL K+T Y + V A T G G S + RT ED
Sbjct: 68 RHVVDGISREHSSW--DLVGLEKWTEYRVWVRAHTDVGPGPESSPVLVRTDED 118
>pdb|1VA9|A Chain A, Solution Structure Of The Second Fniii Domain Of Dscaml1
Protein
Length = 122
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 52/104 (50%), Gaps = 3/104 (2%)
Query: 24 SMPSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYY---PAEDWYESLESDT 80
+ P PP ++ VTS ++++TW+ E +NG+I+GY++ Y P + S+
Sbjct: 13 AAPDGPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPGSNGQYSIVEMK 72
Query: 81 KDTSSLSASLQGLGKFTNYSIQVMAFTQAGDGTLSDVIFCRTLE 124
S +L L KF Y + V AF +AG G S I TLE
Sbjct: 73 ATGDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPSSSEINATTLE 116
>pdb|2ED9|A Chain A, Solution Structure Of The Third Fibronectin Type Iii
Domain Of Human Netrin Receptor Dcc
Length = 124
Score = 55.5 bits (132), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 59/111 (53%), Gaps = 5/111 (4%)
Query: 15 VTILTMYNISMPSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYE 74
+T++T+ ++ PS PP+N++ V S ++K++W P+ +NG I GYK+ +
Sbjct: 19 ITVVTLSDV--PSAPPQNVSLEVVNSRSIKVSWLPPPSGTQNGFITGYKIRHRKTT---R 73
Query: 75 SLESDTKDTSSLSASLQGLGKFTNYSIQVMAFTQAGDGTLSDVIFCRTLED 125
E +T + ++L GL K + YS QV A T G G S+ T E+
Sbjct: 74 RGEMETLEPNNLWYLFTGLEKGSQYSFQVSAMTVNGTGPPSNWYTAETPEN 124
>pdb|1X5G|A Chain A, The Solution Structure Of The Second Fibronectin Type Iii
Domain Of Human Neogenin
Length = 116
Score = 52.8 bits (125), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 57/109 (52%), Gaps = 7/109 (6%)
Query: 17 ILTMYNISMPSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYESL 76
+ T + +P P N+ + + T++ +TWET + NG IQ YK+ Y +
Sbjct: 9 VETQPEVQLPG-PAPNLRAYAASPTSITVTWETP--VSGNGEIQNYKLYYM---EKGTDK 62
Query: 77 ESDTKDTSSLSASLQGLGKFTNYSIQVMAFTQAGDGTLSDVIFCRTLED 125
E D D SS S ++ GL K+T YS +V+A+ + G G + + RTL D
Sbjct: 63 EQDV-DVSSHSYTINGLKKYTEYSFRVVAYNKHGPGVSTPDVAVRTLSD 110
>pdb|2ED8|A Chain A, Solution Structure Of The Second Fibronectin Type Iii
Domain Of Human Netrin Receptor Dcc
Length = 106
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 51/96 (53%), Gaps = 8/96 (8%)
Query: 31 ENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYE-SLESDTKDTSSLSAS 89
EN+ S + T++ ITWE P NG +QGY++ E ++E D LS
Sbjct: 12 ENLQAVSTSPTSILITWE--PPAYANGPVQGYRLFCTEVSTGKEQNIEVD-----GLSYK 64
Query: 90 LQGLGKFTNYSIQVMAFTQAGDGTLSDVIFCRTLED 125
L+GL KFT YS++ +A+ + G G +D I TL D
Sbjct: 65 LEGLKKFTEYSLRFLAYNRYGPGVSTDDITVVTLSD 100
>pdb|1X5H|A Chain A, The Solution Structure Of The Third Fibronectin Type Iii
Domain Of Human Neogenin
Length = 132
Score = 51.2 bits (121), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 57/113 (50%), Gaps = 9/113 (7%)
Query: 15 VTILTMYNISMPSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPA---ED 71
V + T+ ++ PS P+N++ S ++ I W+ +NG I GYK+ Y A D
Sbjct: 9 VAVRTLSDV--PSAAPQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYRKASRKSD 66
Query: 72 WYESLESDTKDTSSLSASLQGLGKFTNYSIQVMAFTQAGDGTLSDVIFCRTLE 124
E+L S T+ LS ++GL + T Y+ +V A T G G +D + T E
Sbjct: 67 VTETLVSGTQ----LSQLIEGLDRGTEYNFRVAALTINGTGPATDWLSAETFE 115
>pdb|2EDY|A Chain A, Solution Structures Of The Fn3 Domain Of Human Receptor-
Type Tyrosine-Protein Phosphatase F
Length = 103
Score = 47.8 bits (112), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 49/94 (52%), Gaps = 4/94 (4%)
Query: 30 PENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYESLESDTKDTSSLSAS 89
P+N+ + +T++T ++ W+ RNG I Y VV+ E L++ T DT +
Sbjct: 12 PQNLHVTGLTTSTTELAWDPPVLAERNGRIISYTVVFRDINSQQE-LQNITTDT---RFT 67
Query: 90 LQGLGKFTNYSIQVMAFTQAGDGTLSDVIFCRTL 123
L GL T Y I+V A+T G G LS I RT+
Sbjct: 68 LTGLKPDTTYDIKVRAWTSKGSGPLSPSIQSRTM 101
>pdb|2DLH|A Chain A, Solution Structure Of The Second Fn3 Domain Of Human
Receptor-Type Tyrosine-Protein Phosphatase Delta
Length = 121
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 54/107 (50%), Gaps = 12/107 (11%)
Query: 17 ILTMYNISMPSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVY-----YPAED 71
+LT + PS P ++ ++STT+ + W+ E NG IQGY+V Y +
Sbjct: 9 VLTQTSEQAPSSAPRDVQARMLSSTTILVQWKEP--EEPNGQIQGYRVYYTMDPTQHVNN 66
Query: 72 WYESLESDTKDTSSLSASLQGLGKFTNYSIQVMAFTQAGDGTLSDVI 118
W + +D++ T+ + L YS++V+AFT GDG LS I
Sbjct: 67 WMKHNVADSQITT-----IGNLVPQKTYSVKVLAFTSIGDGPLSSDI 108
>pdb|1UEN|A Chain A, Solution Structure Of The Third Fibronectin Iii Domain Of
Human Kiaa0343 Protein
Length = 125
Score = 45.4 bits (106), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 48/102 (47%), Gaps = 7/102 (6%)
Query: 25 MPSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYESLESD----- 79
+P + P N+ + V ST ++ W+ VP ++ G +QGY++ Y+ + +
Sbjct: 13 LPMVAPGNVRVNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSSSKRNRRHIEKKI 72
Query: 80 -TKDTSSLSASLQGLGKFTNYSIQVMAFTQAGDGTLS-DVIF 119
T S L GL F++Y++ V G+G S D +F
Sbjct: 73 LTFQGSKTHGMLPGLEPFSHYTLNVRVVNGKGEGPASPDRVF 114
>pdb|1WFN|A Chain A, The Fourth Fn3 Domain Of Human Sidekick-2
Length = 119
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 13/92 (14%)
Query: 29 PPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYESLESDTKDTS---- 84
P +++ S + T+LK++W+ P E +NGI+ GY++ W E ++T+ T
Sbjct: 20 PVGHLSFSEILDTSLKVSWQE-PGE-KNGILTGYRI------SWEEYNRTNTRVTHYLPN 71
Query: 85 -SLSASLQGLGKFTNYSIQVMAFTQAGDGTLS 115
+L + GL T Y+I+V A T G G +S
Sbjct: 72 VTLEYRVTGLTALTTYTIEVAAMTSKGQGQVS 103
>pdb|3D1M|C Chain C, Crystal Structure Of Sonic Hedgehog Bound To The Third
Fniii Domain Of Cdo
pdb|3D1M|D Chain D, Crystal Structure Of Sonic Hedgehog Bound To The Third
Fniii Domain Of Cdo
pdb|3N1F|C Chain C, Crystal Structure Of Ihhn Bound To Cdofn3
pdb|3N1F|D Chain D, Crystal Structure Of Ihhn Bound To Cdofn3
pdb|3N1Q|C Chain C, Crystal Structure Of Dhhn Bound To Cdofn3
pdb|3N1Q|D Chain D, Crystal Structure Of Dhhn Bound To Cdofn3
pdb|3N1Q|F Chain F, Crystal Structure Of Dhhn Bound To Cdofn3
Length = 102
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 45/100 (45%), Gaps = 1/100 (1%)
Query: 24 SMPSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAE-DWYESLESDTKD 82
S P P +V+ T + + W +P+ N IQG+ + Y P + D + D +
Sbjct: 2 STPITGPHIAYTEAVSDTQIMLKWTYIPSSNNNTPIQGFYIYYRPTDSDNDSDYKRDVVE 61
Query: 83 TSSLSASLQGLGKFTNYSIQVMAFTQAGDGTLSDVIFCRT 122
S + L T+Y I++ F + G+ S+V+ C T
Sbjct: 62 GSKQWHMIGHLQPETSYDIKMQCFNEGGESEFSNVMICET 101
>pdb|3N1G|C Chain C, Crystal Structure Of Dhhn Bound To Bocfn3
pdb|3N1G|D Chain D, Crystal Structure Of Dhhn Bound To Bocfn3
pdb|3N1M|C Chain C, Crystal Structure Of Ihhn Bound To Bocfn3
pdb|3N1P|C Chain C, Crystal Structure Of Ihhn Bound To Bocfn3
Length = 111
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Query: 37 SVTSTTLKITWETVPNEARNGIIQGYKVVYYPAE-DWYESLESDTKDTSSLSASLQGLGK 95
+V TT+ + W +P N I G+ + Y P + D + D + S+ L
Sbjct: 17 AVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKDMVEGDKYWHSISHLQP 76
Query: 96 FTNYSIQVMAFTQAGDGTLSDVIFCRT 122
T+Y I++ F + G+ S+V+ C T
Sbjct: 77 ETSYDIKMQCFNEGGESEFSNVMICET 103
>pdb|2EE2|A Chain A, Solution Structures Of The Fn3 Domain Of Human Contactin 1
Length = 119
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 4/93 (4%)
Query: 26 PSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYESLESDTKDTSS 85
PS P + ++S+ + + WE V + I++ Y++ Y+ A D E+ +
Sbjct: 18 PSEAPTEVGVKVLSSSEISVHWEHVLEK----IVESYQIRYWAAHDKEEAANRVQVTSQE 73
Query: 86 LSASLQGLGKFTNYSIQVMAFTQAGDGTLSDVI 118
SA L+ L T Y I+V A AG G SD+I
Sbjct: 74 YSARLENLLPDTQYFIEVGACNSAGCGPPSDMI 106
>pdb|1X4Y|A Chain A, Solution Structure Of The 3rd Fibronectin Type Iii Domain
From Mouse Biregional Cell Adhesion
Molecule-RelatedDOWN- Regulated Oncogenes (Cdon) Binding
Protein
Length = 114
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Query: 37 SVTSTTLKITWETVPNEARNGIIQGYKVVYYPAE-DWYESLESDTKDTSSLSASLQGLGK 95
+V TT+ + W +P N I G+ + Y P + D + D + S+ L
Sbjct: 19 AVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKDMVEGDRYWHSISHLQP 78
Query: 96 FTNYSIQVMAFTQAGDGTLSDVIFCRT 122
T+Y I++ F + G+ S+V+ C T
Sbjct: 79 ETSYDIKMQCFNEGGESEFSNVMICET 105
>pdb|2X10|A Chain A, Crystal Structure Of The Complete Epha2 Ectodomain
Length = 545
Score = 38.9 bits (89), Expect = 8e-04, Method: Composition-based stats.
Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 5/102 (4%)
Query: 22 NISMPSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYESLESDTK 81
++S+ P + ++T+L ++W P + + Y+V Y D S + +
Sbjct: 433 SVSINQTEPPKVRLEGRSTTSLSVSWSIPPPQQSR--VWKYEVTYRKKGD---SNSYNVR 487
Query: 82 DTSSLSASLQGLGKFTNYSIQVMAFTQAGDGTLSDVIFCRTL 123
T S +L L T Y +QV A TQ G G S V +TL
Sbjct: 488 RTEGFSVTLDDLAPDTTYLVQVQALTQEGQGAGSKVHEFQTL 529
>pdb|2DJS|A Chain A, Solution Structures Of The Fn3 Domain Of Human Ephrin
Type- B Receptor 1
Length = 108
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Query: 38 VTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYESLESDTKDTSSLSASLQGLGKFT 97
V++T IT E NGII Y++ YY E + S + + +A + GL
Sbjct: 17 VSATMRSITLSWPQPEQPNGIILDYEIRYYEKE--HNEFNSSMARSQTNTARIDGLRPGM 74
Query: 98 NYSIQVMAFTQAGDGTLSDVIFCRTLED 125
Y +QV A T AG G S + +TL D
Sbjct: 75 VYVVQVRARTVAGYGKFSGKMCFQTLTD 102
>pdb|1QG3|A Chain A, Crystal Structure Of A Tandem Pair Of Fibronectin Type Iii
Domains From The Cytoplasmic Tail Of Integrin Alpha6
Beta4
pdb|1QG3|B Chain B, Crystal Structure Of A Tandem Pair Of Fibronectin Type Iii
Domains From The Cytoplasmic Tail Of Integrin Alpha6
Beta4
Length = 195
Score = 37.7 bits (86), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 7/96 (7%)
Query: 30 PENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYESLESDTKDTSSLSAS 89
P+N + S + W +P +G GY+V Y+ D E+ D+ S
Sbjct: 5 PQNPNAKAAGSRKIHFNW--LP---PSGKPMGYRVKYWIQGD--SESEAHLLDSKVPSVE 57
Query: 90 LQGLGKFTNYSIQVMAFTQAGDGTLSDVIFCRTLED 125
L L + +Y ++V A+ G+G S ++ CRT ++
Sbjct: 58 LTNLYPYCDYEMKVCAYGAQGEGPYSSLVSCRTHQE 93
>pdb|3F7Q|A Chain A, First Pair Of Fibronectin Type Iii Domains And Part Of The
Connecting Segment Of The Integrin Beta4
pdb|3F7Q|B Chain B, First Pair Of Fibronectin Type Iii Domains And Part Of The
Connecting Segment Of The Integrin Beta4
Length = 234
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 7/96 (7%)
Query: 30 PENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYESLESDTKDTSSLSAS 89
P+N + S + W +P +G GY+V Y+ D E+ D+ S
Sbjct: 9 PQNPNAKAAGSRKIHFNW--LPP---SGKPMGYRVKYWIQGD--SESEAHLLDSKVPSVE 61
Query: 90 LQGLGKFTNYSIQVMAFTQAGDGTLSDVIFCRTLED 125
L L + +Y ++V A+ G+G S ++ CRT ++
Sbjct: 62 LTNLYPYCDYEMKVCAYGAQGEGPYSSLVSCRTHQE 97
>pdb|3F7R|A Chain A, First Pair Of Fibronectin Type Iii Domains And Part Of The
Connecting Segment Of The Integrin Beta4
Length = 249
Score = 37.0 bits (84), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 7/96 (7%)
Query: 30 PENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYESLESDTKDTSSLSAS 89
P+N + S + W +P +G GY+V Y+ D E+ D+ S
Sbjct: 9 PQNPNAKAAGSRKIHFNW--LPP---SGKPMGYRVKYWIQGD--SESEAHLLDSKVPSVE 61
Query: 90 LQGLGKFTNYSIQVMAFTQAGDGTLSDVIFCRTLED 125
L L + +Y ++V A+ G+G S ++ CRT ++
Sbjct: 62 LTNLYPYCDYEMKVCAYGAQGEGPYSSLVSCRTHQE 97
>pdb|3F7P|C Chain C, Crystal Structure Of A Complex Between Integrin Beta4 And
Plectin
pdb|3F7P|D Chain D, Crystal Structure Of A Complex Between Integrin Beta4 And
Plectin
pdb|3F7P|E Chain E, Crystal Structure Of A Complex Between Integrin Beta4 And
Plectin
Length = 248
Score = 37.0 bits (84), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 7/96 (7%)
Query: 30 PENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYESLESDTKDTSSLSAS 89
P+N + S + W +P +G GY+V Y+ D E+ D+ S
Sbjct: 8 PQNPNAKAAGSRKIHFNW--LPP---SGKPMGYRVKYWIQGD--SESEAHLLDSKVPSVE 60
Query: 90 LQGLGKFTNYSIQVMAFTQAGDGTLSDVIFCRTLED 125
L L + +Y ++V A+ G+G S ++ CRT ++
Sbjct: 61 LTNLYPYCDYEMKVCAYGAQGEGPYSSLVSCRTHQE 96
>pdb|3FL7|A Chain A, Crystal Structure Of The Human Ephrin A2 Ectodomain
Length = 536
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 5/102 (4%)
Query: 22 NISMPSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYESLESDTK 81
++S+ P + ++T+L ++W P + + Y+V Y D S + +
Sbjct: 436 SVSINQTEPPKVRLEGRSTTSLSVSWSIPPPQQSR--VWKYEVTYRKKGD---SNSYNVR 490
Query: 82 DTSSLSASLQGLGKFTNYSIQVMAFTQAGDGTLSDVIFCRTL 123
T S +L L T Y +QV A TQ G G S V +TL
Sbjct: 491 RTEGFSVTLDDLAPDTTYLVQVQALTQEGQGAGSKVHEFQTL 532
>pdb|2X11|A Chain A, Crystal Structure Of The Complete Epha2 Ectodomain In
Complex With Ephrin A5 Receptor Binding Domain
Length = 545
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 5/102 (4%)
Query: 22 NISMPSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYESLESDTK 81
++S+ P + ++T+L ++W P + + Y+V Y D S + +
Sbjct: 433 SVSINQTEPPKVRLEGRSTTSLSVSWSIPPPQQSR--VWKYEVTYRKKGD---SNSYNVR 487
Query: 82 DTSSLSASLQGLGKFTNYSIQVMAFTQAGDGTLSDVIFCRTL 123
T S +L L T Y +QV A TQ G G S V +TL
Sbjct: 488 RTEGFSVTLDDLAPDTTYLVQVQALTQEGQGAGSKVHEFQTL 529
>pdb|1J8K|A Chain A, Nmr Structure Of The Fibronectin Eda Domain, Nmr, 20
Structures
Length = 94
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 30 PENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYESLESDTKDTSSLSAS 89
P+ +A + V ++KI WE+ G + Y+V Y ED L D +A
Sbjct: 5 PKGLAFTDVDVDSIKIAWES-----PQGQVSRYRVTYSSPEDGIHELFP-APDGEEDTAE 58
Query: 90 LQGLGKFTNYSIQVMAF 106
LQGL + Y++ V+A
Sbjct: 59 LQGLRPGSEYTVSVVAL 75
>pdb|1WJ3|A Chain A, Solution Structure Of The Fourth Fn3 Domain Of Kiaa1496
Protein
Length = 117
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 6/93 (6%)
Query: 26 PSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYESLESDTKDTSS 85
PS PP N+ ++ T T + + WE V + GYKV Y + + + K ++
Sbjct: 18 PSQPPGNVVWNA-TDTKVLLNWEQVKAMENESEVTGYKVFYRTSSQNNVQVLNTNKTSAE 76
Query: 86 LSASLQGLGKFTNYSIQVMAFTQAGDGTLSDVI 118
L ++ +Y I+V A T GDGT S+ I
Sbjct: 77 LVLPIK-----EDYIIEVKATTDGGDGTSSEQI 104
>pdb|2DJU|A Chain A, Solution Structures Of The Fn3 Domain Of Human Receptor-
Type Tyrosine-Protein Phosphatase F
Length = 106
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 46/99 (46%), Gaps = 12/99 (12%)
Query: 29 PPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYESLESDTKDTSSLSA 88
PP ++ + T+T++ +TW++ +E V YY + E ++ ++
Sbjct: 10 PPIDLVVTETTATSVTLTWDSGNSE---------PVTYYGIQYRAAGTEGPFQEVDGVAT 60
Query: 89 ---SLQGLGKFTNYSIQVMAFTQAGDGTLSDVIFCRTLE 124
S+ GL F+ Y+ +V+A G G S+ + RT E
Sbjct: 61 TRYSIGGLSPFSEYAFRVLAVNSIGRGPPSEAVRARTGE 99
>pdb|1BJ8|A Chain A, Third N-Terminal Domain Of Gp130, Nmr, Minimized Average
Structure
Length = 109
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 7/92 (7%)
Query: 29 PPENIAC--SSVTSTTLKITWETVPNEARNGIIQGYKVVYY--PAEDWYESLESDTKDTS 84
PP N++ S S+ LK+TW T P+ ++ II Y + Y A W + DT T
Sbjct: 8 PPHNLSVINSEELSSILKLTW-TNPS-IKSVIILKYNIQYRTKDASTWSQIPPEDTASTR 65
Query: 85 SLSASLQGLGKFTNYSIQVMAFTQAGDGTLSD 116
S S ++Q L FT Y ++ + G G SD
Sbjct: 66 S-SFTVQDLKPFTEYVFRIRCMKEDGKGYWSD 96
>pdb|1P9M|A Chain A, Crystal Structure Of The Hexameric Human Il-6/il-6 Alpha
Receptor/gp130 Complex
Length = 299
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 7/92 (7%)
Query: 29 PPENIAC--SSVTSTTLKITWETVPNEARNGIIQGYKVVYY--PAEDWYESLESDTKDTS 84
PP N++ S S+ LK+TW T P+ ++ II Y + Y A W + DT T
Sbjct: 202 PPHNLSVINSEELSSILKLTW-TNPS-IKSVIILKYNIQYRTKDASTWSQIPPEDTASTR 259
Query: 85 SLSASLQGLGKFTNYSIQVMAFTQAGDGTLSD 116
S S ++Q L FT Y ++ + G G SD
Sbjct: 260 S-SFTVQDLKPFTEYVFRIRCMKEDGKGYWSD 290
>pdb|1I1R|A Chain A, Crystal Structure Of A CytokineRECEPTOR COMPLEX
Length = 303
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 7/92 (7%)
Query: 29 PPENIAC--SSVTSTTLKITWETVPNEARNGIIQGYKVVYY--PAEDWYESLESDTKDTS 84
PP N++ S S+ LK+TW T P+ ++ II Y + Y A W + DT T
Sbjct: 202 PPHNLSVINSEELSSILKLTW-TNPS-IKSVIILKYNIQYRTKDASTWSQIPPEDTASTR 259
Query: 85 SLSASLQGLGKFTNYSIQVMAFTQAGDGTLSD 116
S S ++Q L FT Y ++ + G G SD
Sbjct: 260 S-SFTVQDLKPFTEYVFRIRCMKEDGKGYWSD 290
>pdb|2EDD|A Chain A, Solution Structure Of The Fifth Fibronectin Type Iii
Domain Of Human Netrin Receptor Dcc
Length = 123
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 45/109 (41%), Gaps = 12/109 (11%)
Query: 22 NISMPSLPPENIACSSVTSTTLKITW--ETVPNEARNGIIQGYKVVYYPAEDWYESLESD 79
++S P LPP + ++T ++++W +VP + ++ Y V W S +
Sbjct: 14 DLSTPMLPPVGVQAVALTHDAVRVSWADNSVPKNQKTSEVRLYTV------RWRTSFSAS 67
Query: 80 TK----DTSSLSASLQGLGKFTNYSIQVMAFTQAGDGTLSDVIFCRTLE 124
K DT+SLS + GL T Y VM T S T E
Sbjct: 68 AKYKSEDTTSLSYTATGLKPNTMYEFSVMVTKNRRSSTWSMTAHATTYE 116
>pdb|3L5H|A Chain A, Crystal Structure Of The Full Ectodomain Of Human Gp130:
New Insights Into The Molecular Assembly Of Receptor
Complexes
Length = 589
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 7/92 (7%)
Query: 29 PPENIAC--SSVTSTTLKITWETVPNEARNGIIQGYKVVYY--PAEDWYESLESDTKDTS 84
PP N++ S S+ LK+TW T P+ ++ II Y + Y A W + DT T
Sbjct: 201 PPHNLSVINSEELSSILKLTW-TNPS-IKSVIILKYNIQYRTKDASTWSQIPPEDTASTR 258
Query: 85 SLSASLQGLGKFTNYSIQVMAFTQAGDGTLSD 116
S S ++Q L FT Y ++ + G G SD
Sbjct: 259 S-SFTVQDLKPFTEYVFRIRCMKEDGKGYWSD 289
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 9/69 (13%)
Query: 45 ITWETVPNEARNGIIQGYKVVYYPAEDWYESLESDTK---DTSSLSASLQGLGKFTNYSI 101
+ W+ +P + +NG I+ Y + Y + ++T D+S +L L T Y +
Sbjct: 514 LEWDQLPVDVQNGFIRNYTIFYRTI------IGNETAVNVDSSHTEYTLSSLTSDTLYMV 567
Query: 102 QVMAFTQAG 110
++ A+T G
Sbjct: 568 RMAAYTDEG 576
>pdb|1PVH|A Chain A, Crystal Structure Of Leukemia Inhibitory Factor In Complex
With Gp130
pdb|1PVH|C Chain C, Crystal Structure Of Leukemia Inhibitory Factor In Complex
With Gp130
Length = 201
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 7/92 (7%)
Query: 29 PPENIAC--SSVTSTTLKITWETVPNEARNGIIQGYKVVYY--PAEDWYESLESDTKDTS 84
PP N++ S S+ LK+TW T P+ ++ II Y + Y A W + DT T
Sbjct: 102 PPHNLSVINSEELSSILKLTW-TNPS-IKSVIILKYNIQYRTKDASTWSQIPPEDTASTR 159
Query: 85 SLSASLQGLGKFTNYSIQVMAFTQAGDGTLSD 116
S S ++Q L FT Y ++ + G G SD
Sbjct: 160 S-SFTVQDLKPFTEYVFRIRCMKEDGKGYWSD 190
>pdb|1BQU|A Chain A, Cytokyne-Binding Region Of Gp130
pdb|1BQU|B Chain B, Cytokyne-Binding Region Of Gp130
Length = 215
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 7/92 (7%)
Query: 29 PPENIAC--SSVTSTTLKITWETVPNEARNGIIQGYKVVYY--PAEDWYESLESDTKDTS 84
PP N++ S S+ LK+TW T P+ ++ II Y + Y A W + DT T
Sbjct: 106 PPHNLSVINSEELSSILKLTW-TNPS-IKSVIILKYNIQYRTKDASTWSQIPPEDTASTR 163
Query: 85 SLSASLQGLGKFTNYSIQVMAFTQAGDGTLSD 116
S S ++Q L FT Y ++ + G G SD
Sbjct: 164 S-SFTVQDLKPFTEYVFRIRCMKEDGKGYWSD 194
>pdb|1X5L|A Chain A, Solution Structure Of The Second Fn3 Domain Of Eph
Receptor A8 Protein
Length = 111
Score = 33.9 bits (76), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Query: 41 TTLKITWETVPNEARNGIIQGYKVVYYPAEDWYESLESDTKDTSSLSASLQGLGKFTNYS 100
T++ + W+ E NGII Y++ YY + +S T + A++ GL T Y
Sbjct: 25 TSVSLLWQE--PEQPNGIILEYEIKYYEKDKEMQSY--STLKAVTTRATVSGLKPGTRYV 80
Query: 101 IQVMAFTQAGDGTLSDVIFCRT 122
QV A T AG G S + T
Sbjct: 81 FQVRARTSAGCGRFSQAMEVET 102
>pdb|2EDE|A Chain A, Solution Structure Of The Sixth Fibronectin Type Iii
Domain Of Human Netrin Receptor Dcc
Length = 114
Score = 33.1 bits (74), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 40/86 (46%), Gaps = 13/86 (15%)
Query: 45 ITWETVPNEARNGIIQGYKVVY-----YPAEDW-YESLESDTKDTSSLSASLQGLGKFTN 98
++W+ P EA NG I Y + Y P +DW E++ D L+ + L T
Sbjct: 29 VSWQP-PLEA-NGKITAYILFYTLDKNIPIDDWIMETISGD-----RLTHQIMDLNLDTM 81
Query: 99 YSIQVMAFTQAGDGTLSDVIFCRTLE 124
Y ++ A G G LSD I RTL+
Sbjct: 82 YYFRIQARNSKGVGPLSDPILFRTLK 107
>pdb|1UJT|A Chain A, Solution Structure Of The Second Fibronectin Type Iii
Domain Of Human Kiaa1568 Protein
Length = 120
Score = 32.0 bits (71), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 10/93 (10%)
Query: 38 VTSTTLKITWETVPNEARNGIIQGYKVVYYP-----AEDWYESLESDTKDTSSLSASLQG 92
+T TT+++TW TV + + IQGY+V+Y A +++L D K + SA L
Sbjct: 27 LTPTTVQVTW-TVDRQPQ--FIQGYRVMYRQTSGLQATSSWQNL--DAKVPTERSAVLVN 81
Query: 93 LGKFTNYSIQVMAFTQAGDGTLSDVIFCRTLED 125
L K Y I+V + G S+ RT E+
Sbjct: 82 LKKGVTYEIKVRPYFNEFQGMDSESKTVRTTEE 114
>pdb|2E7H|A Chain A, Solution Structure Of The Second Fn3 Domain From Human
Ephrin Type-B Receptor 4
Length = 109
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 7/102 (6%)
Query: 27 SLPP--ENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYESLES-DTKDT 83
S PP +I + + ++L + W VP A +G + Y+V Y+ E E S T
Sbjct: 6 SGPPAVSDIRVTRSSPSSLSLAW-AVPR-APSGAVLDYEVKYH--EKGAEGPSSVRFLKT 61
Query: 84 SSLSASLQGLGKFTNYSIQVMAFTQAGDGTLSDVIFCRTLED 125
S A L+GL + +Y +QV A ++AG G +T D
Sbjct: 62 SENRAELRGLKRGASYLVQVRARSEAGYGPFGQEHHSQTQLD 103
>pdb|3P4L|A Chain A, Crystal Structure Of A Hemojuvelin-Binding Fragment Of
Neogenin
Length = 211
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 51/107 (47%), Gaps = 17/107 (15%)
Query: 25 MPSLPPENIACSSVTST--TLKITWETVPNEARNGIIQGYKVVYYPAE------DWY-ES 75
+P+ PP+++ S T+ + W+ P+EA NG I GY ++YY + DW E
Sbjct: 104 VPTSPPKDVTVVSKEGKPKTIIVNWQP-PSEA-NGKITGY-IIYYSTDVNAEIHDWVIEP 160
Query: 76 LESDTKDTSSLSASLQGLGKFTNYSIQVMAFTQAGDGTLSDVIFCRT 122
+ + L+ +Q L T Y ++ A G G +S+ + RT
Sbjct: 161 VVGN-----RLTHQIQELTLDTPYYFKIQARNSKGMGPMSEAVQFRT 202
Score = 30.4 bits (67), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 46/107 (42%), Gaps = 14/107 (13%)
Query: 25 MPSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVV---YYPAEDWYESLESDTK 81
+P +PP + S ++ T++ITW A N + + K+ YY W ++ ++TK
Sbjct: 3 LPMMPPVGVQASILSHDTIRITW------ADNSLPKHQKITDSRYYTVR-WKTNIPANTK 55
Query: 82 ----DTSSLSASLQGLGKFTNYSIQVMAFTQAGDGTLSDVIFCRTLE 124
+ ++LS + GL T Y VM T S T E
Sbjct: 56 YKNANATTLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTTFE 102
>pdb|1X5F|A Chain A, The Solution Structure Of The First Fibronectin Type Iii
Domain Of Human Neogenin
Length = 120
Score = 30.8 bits (68), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 2/93 (2%)
Query: 30 PENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYESLESDTKDTSSLSAS 89
P ++ S V++ +K+TW T P +G Y V Y E +E +T + +
Sbjct: 21 PRDVVASLVSTRFIKLTWRT-PASDPHGDNLTYSVFYTKEGIARERVE-NTSHPGEMQVT 78
Query: 90 LQGLGKFTNYSIQVMAFTQAGDGTLSDVIFCRT 122
+Q L T Y +VMA + G G S + T
Sbjct: 79 IQNLMPATVYIFRVMAQNKHGSGESSAPLRVET 111
>pdb|1X5K|A Chain A, The Solution Structure Of The Sixth Fibronectin Type Iii
Domain Of Human Neogenin
Length = 124
Score = 30.0 bits (66), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 51/106 (48%), Gaps = 15/106 (14%)
Query: 25 MPSLPPENIACSSVTST--TLKITWETVPNEARNGIIQGYKVVYYPAE------DWYESL 76
+P+ PP+++ S T+ + W+ P+EA NG I GY ++YY + DW +
Sbjct: 17 VPTSPPKDVTVVSKEGKPKTIIVNWQP-PSEA-NGKITGY-IIYYSTDVNAEIHDWV--I 71
Query: 77 ESDTKDTSSLSASLQGLGKFTNYSIQVMAFTQAGDGTLSDVIFCRT 122
E + L+ +Q L T Y ++ A G G +S+ + RT
Sbjct: 72 EPVVGN--RLTHQIQELTLDTPYYFKIQARNSKGMGPMSEAVQFRT 115
>pdb|1TDQ|A Chain A, Structural Basis For The Interactions Between Tenascins
And The C-Type Lectin Domains From Lecticans: Evidence
For A Cross-Linking Role For Tenascins
Length = 283
Score = 29.6 bits (65), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 7/49 (14%)
Query: 30 PENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVY--YPAEDWYESL 76
P+N+ S T+T+L + W+ EA Q YKVVY E ++E L
Sbjct: 108 PKNLRVGSRTATSLDLEWDNSEAEA-----QEYKVVYSTLAGEQYHEVL 151
>pdb|2DBJ|A Chain A, Solution Structures Of The Fn3 Domain Of Human Proto-
Oncogene Tyrosine-Protein Kinase Mer Precursor
Length = 124
Score = 28.9 bits (63), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 5/105 (4%)
Query: 17 ILTMYNISMPSLPPENIACS-SVTSTTLKITWETVPNEARNGIIQGYKV--VYYPAEDWY 73
IL PS+ P N+ + +S + I W P + ++G + GY++ V+ A
Sbjct: 9 ILASTTEGAPSVAPLNVTVFLNESSDNVDIRWMKPPTKQQDGELVGYRISHVWQSAGISK 68
Query: 74 ESLESDTKDTSSLSASLQGLGKFTNYSIQVMAFTQAGDGTLSDVI 118
E LE ++ S S+Q ++++ A T+ G G SD +
Sbjct: 69 ELLEEVGQNGSRARISVQ--VHNATCTVRIAAVTRGGVGPFSDPV 111
>pdb|1X4X|A Chain A, Solution Structure Of The 6th Fibronectin Type Iii Domain
From Human Fibronectin Type Iii Domain Containing
Protein 3
Length = 106
Score = 28.9 bits (63), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 86 LSASLQGLGKFTNYSIQVMAFTQAGDGTLSDVIFCRT 122
LS ++GL T Y +V A + G G S+V+ C T
Sbjct: 61 LSYEIKGLSPATTYYCRVQALSVVGAGPFSEVVACVT 97
>pdb|1X5J|A Chain A, The Solution Structure Of The Fifth Fibronectin Type Iii
Domain Of Human Neogenin
Length = 113
Score = 28.5 bits (62), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 46/108 (42%), Gaps = 14/108 (12%)
Query: 24 SMPSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVV---YYPAEDWYESLESDT 80
S P +PP + S ++ T++ITW A N + + K+ YY W ++ ++T
Sbjct: 6 SGPMMPPVGVQASILSHDTIRITW------ADNSLPKHQKITDSRYYTVR-WKTNIPANT 58
Query: 81 K----DTSSLSASLQGLGKFTNYSIQVMAFTQAGDGTLSDVIFCRTLE 124
K + ++LS + GL T Y VM T S T E
Sbjct: 59 KYKNANATTLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTTFE 106
>pdb|1FNF|A Chain A, Fragment Of Human Fibronectin Encompassing Type-Iii
Repeats 7 Through 10
Length = 368
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 8/87 (9%)
Query: 30 PENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYES-LESDTKDTSSLSA 88
P ++ + T T+L I+W+ A ++ Y++ Y E S ++ T S +A
Sbjct: 279 PRDLEVVAATPTSLLISWD-----APAVTVRYYRITY--GETGGNSPVQEFTVPGSKSTA 331
Query: 89 SLQGLGKFTNYSIQVMAFTQAGDGTLS 115
++ GL +Y+I V A T GD S
Sbjct: 332 TISGLKPGVDYTITVYAVTGRGDSPAS 358
>pdb|3R8Q|A Chain A, Structure Of Fibronectin Domain 12-14
Length = 290
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 11/85 (12%)
Query: 17 ILTMYNISMPSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYESL 76
+ T+ N+S PP + T TT+ I+W T + I G++V PA
Sbjct: 107 VTTLENVS----PPRRARVTDATETTITISWRT-----KTETITGFQVDAVPANGQTPIQ 157
Query: 77 ESDTKDTSSLSASLQGLGKFTNYSI 101
+ D S ++ GL T+Y I
Sbjct: 158 RTIKPDVRSY--TITGLQPGTDYKI 180
>pdb|1FNH|A Chain A, Crystal Structure Of Heparin And Integrin Binding Segment
Of Human Fibronectin
Length = 271
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 11/85 (12%)
Query: 17 ILTMYNISMPSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYESL 76
+ T+ N+S PP + T TT+ I+W T + I G++V PA
Sbjct: 88 VTTLENVS----PPRRARVTDATETTITISWRT-----KTETITGFQVDAVPANGQTPIQ 138
Query: 77 ESDTKDTSSLSASLQGLGKFTNYSI 101
+ D S ++ GL T+Y I
Sbjct: 139 RTIKPDVRSY--TITGLQPGTDYKI 161
>pdb|3TES|A Chain A, Crystal Structure Of Tencon
pdb|3TES|B Chain B, Crystal Structure Of Tencon
pdb|3TES|C Chain C, Crystal Structure Of Tencon
pdb|3TES|D Chain D, Crystal Structure Of Tencon
Length = 98
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 6/74 (8%)
Query: 30 PENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYESLESDTKDTSSLSAS 89
P+N+ S VT +L+++W T P+ A + + Y +E E++ + T S S
Sbjct: 5 PKNLVVSEVTEDSLRLSW-TAPDAA----FDSFMIQYQESEKVGEAI-NLTVPGSERSYD 58
Query: 90 LQGLGKFTNYSIQV 103
L GL T Y++ +
Sbjct: 59 LTGLKPGTEYTVSI 72
>pdb|1TTF|A Chain A, The Three-Dimensional Structure Of The Tenth Type Iii
Module Of Fibronectin: An Insight Into Rgd-Mediated
Interactions
pdb|1TTG|A Chain A, The Three-Dimensional Structure Of The Tenth Type Iii
Module Of Fibronectin: An Insight Into Rgd-Mediated
Interactions
Length = 94
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 8/83 (9%)
Query: 30 PENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYES-LESDTKDTSSLSA 88
P ++ + T T+L I+W+ A ++ Y++ Y E S ++ T S +A
Sbjct: 5 PRDLEVVAATPTSLLISWD-----APAVTVRYYRITY--GETGGNSPVQEFTVPGSKSTA 57
Query: 89 SLQGLGKFTNYSIQVMAFTQAGD 111
++ GL +Y+I V A T GD
Sbjct: 58 TISGLKPGVDYTITVYAVTGRGD 80
>pdb|3B83|A Chain A, Tba
pdb|3B83|B Chain B, Tba
pdb|3B83|C Chain C, Tba
pdb|3B83|D Chain D, Tba
pdb|3B83|E Chain E, Tba
pdb|3B83|F Chain F, Tba
pdb|3B83|G Chain G, Tba
pdb|3B83|H Chain H, Tba
Length = 100
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
Query: 29 PPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYESLESDTKDTSSLSA 88
PP NI +++T TT +TW+ P GI+ + P+++ L S S S
Sbjct: 4 PPFNIKVTNITLTTAVVTWQP-PILPIEGILVTFGRKNDPSDETTVDLTS-----SITSL 57
Query: 89 SLQGLGKFTNYSIQVMA 105
+L L T Y I+++A
Sbjct: 58 TLTNLEPNTTYEIRIVA 74
>pdb|1OLZ|A Chain A, The Ligand-Binding Face Of The Semaphorins Revealed By The
High Resolution Crystal Structure Of Sema4d
pdb|1OLZ|B Chain B, The Ligand-Binding Face Of The Semaphorins Revealed By The
High Resolution Crystal Structure Of Sema4d
pdb|3OL2|A Chain A, Receptor-Ligand Structure Of Human Semaphorin 4d With
Plexin B1
Length = 663
Score = 26.6 bits (57), Expect = 3.5, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 95 KFTNYSIQVMAFTQAGDGTLSDVIFCRT 122
K NY+ V+ TQA DGT+ DV+F T
Sbjct: 395 KDVNYTQIVVDRTQALDGTVYDVMFVST 422
>pdb|2EE3|A Chain A, Solution Structures Of The Fn3 Domain Of Human Collagen
Alpha-1(Xx) Chain
Length = 108
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 10/92 (10%)
Query: 29 PPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYES-LESDTKDTSSLS 87
PP ++ S V+ ++ WE P R +V Y +E + E+ TS++
Sbjct: 10 PPRHLGFSDVSHDAARVFWEGAPRPVRL-----VRVTYVSSEGGHSGQTEAPGNATSAM- 63
Query: 88 ASLQGLGKFTNYSIQVMA-FTQAGDGTLSDVI 118
L L T Y+++V + G TL+ +
Sbjct: 64 --LGPLSSSTTYTVRVTCLYPGGGSSTLTGRV 93
>pdb|3L5J|A Chain A, Crystal Structure Of Fniii Domains Of Human Gp130 (Domains
4
pdb|3L5J|B Chain B, Crystal Structure Of Fniii Domains Of Human Gp130 (Domains
4
Length = 288
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 9/69 (13%)
Query: 45 ITWETVPNEARNGIIQGYKVVYYPAEDWYESLESDTK---DTSSLSASLQGLGKFTNYSI 101
+ W+ +P + +NG I+ Y + Y + ++T D+S +L L T Y +
Sbjct: 215 LEWDQLPVDVQNGFIRNYTIFYRTI------IGNETAVNVDSSHTEYTLSSLTSDTLYMV 268
Query: 102 QVMAFTQAG 110
++ A+T G
Sbjct: 269 RMAAYTDEG 277
>pdb|3L5I|A Chain A, Crystal Structure Of Fniii Domains Of Human Gp130 (Domains
4-6)
Length = 290
Score = 26.2 bits (56), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 9/69 (13%)
Query: 45 ITWETVPNEARNGIIQGYKVVYYPAEDWYESLESDTK---DTSSLSASLQGLGKFTNYSI 101
+ W+ +P + +NG I+ Y + Y + ++T D+S +L L T Y +
Sbjct: 215 LEWDQLPVDVQNGFIRNYTIFYRTI------IGNETAVNVDSSHTEYTLSSLTSDTLYXV 268
Query: 102 QVMAFTQAG 110
+ A+T G
Sbjct: 269 RXAAYTDEG 277
>pdb|3K1L|B Chain B, Crystal Structure Of Fancl
pdb|3K1L|A Chain A, Crystal Structure Of Fancl
Length = 381
Score = 26.2 bits (56), Expect = 4.9, Method: Composition-based stats.
Identities = 10/44 (22%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 47 WETVPNEARNGIIQGYKVVYYPAEDWYESLESDTKDTSSLSASL 90
W++ N +N +++ + + Y+P DW + + D +D L ++
Sbjct: 271 WDSEMNIHKN-LLRMFDLCYFPMPDWSDGPKLDEEDNEELRCNI 313
>pdb|1UEY|A Chain A, Solution Structure Of The First Fibronectin Type Iii
Domain Of Human Kiaa0343 Protein
Length = 127
Score = 25.8 bits (55), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 12/87 (13%)
Query: 29 PPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAED----WYESLE-SDTKDT 83
PP ++ + +++++W P + N I + + Y A W+ E S T+ T
Sbjct: 19 PPFDLELTDQLDKSVQLSW--TPGDDNNSPITKFIIEYEDAMHKPGLWHHQTEVSGTQTT 76
Query: 84 SSLSASLQGLGKFTNYSIQVMAFTQAG 110
+ L+ L + NYS +VMA G
Sbjct: 77 AQLN-----LSPYVNYSFRVMAVNSIG 98
>pdb|2WDC|A Chain A, Termus Thermophilus Sulfate Thiohydrolase Soxb In Complex
With Glycerol
pdb|2WDD|A Chain A, Termus Thermophilus Sulfate Thiohydrolase Soxb In Complex
With Sulfate
pdb|2WDE|A Chain A, Termus Thermophilus Sulfate Thiohydrolase Soxb In Complex
With Thiosulfate
pdb|2WDF|A Chain A, Termus Thermophilus Sulfate Thiohydrolase Soxb
Length = 562
Score = 25.4 bits (54), Expect = 8.8, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 42 TLKITWETVPNEARNGIIQGYKVVYYPAEDW 72
TL TW+ + EA I +VV+ PA W
Sbjct: 376 TLYSTWDQLVGEAVKAIYPEVEVVFSPAVRW 406
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.129 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,690,874
Number of Sequences: 62578
Number of extensions: 126681
Number of successful extensions: 402
Number of sequences better than 100.0: 72
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 352
Number of HSP's gapped (non-prelim): 79
length of query: 125
length of database: 14,973,337
effective HSP length: 86
effective length of query: 39
effective length of database: 9,591,629
effective search space: 374073531
effective search space used: 374073531
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 45 (21.9 bits)