Query psy5696
Match_columns 125
No_of_seqs 125 out of 1229
Neff 11.3
Searched_HMMs 46136
Date Sat Aug 17 00:19:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5696.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5696hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4221|consensus 99.8 2.2E-18 4.8E-23 122.3 11.5 120 2-124 593-712 (1381)
2 KOG3513|consensus 99.8 2.7E-17 5.8E-22 116.4 13.0 118 2-123 797-914 (1051)
3 PF00041 fn3: Fibronectin type 99.6 1E-14 2.2E-19 77.0 10.0 84 29-115 2-85 (85)
4 KOG0196|consensus 99.6 6E-14 1.3E-18 97.3 12.4 108 10-124 429-536 (996)
5 KOG4221|consensus 99.5 2E-13 4.3E-18 97.9 12.5 112 2-125 502-613 (1381)
6 KOG3513|consensus 99.5 3.8E-13 8.2E-18 95.9 11.1 121 2-125 693-817 (1051)
7 cd00063 FN3 Fibronectin type 3 99.3 4.8E-10 1E-14 59.1 11.4 90 29-121 3-92 (93)
8 KOG4222|consensus 98.9 2.1E-08 4.6E-13 72.6 9.6 110 9-121 730-842 (1281)
9 smart00060 FN3 Fibronectin typ 98.8 9.2E-07 2E-11 45.1 11.8 76 31-110 5-81 (83)
10 PF09294 Interfer-bind: Interf 98.8 2.1E-07 4.6E-12 51.0 9.4 90 29-123 5-106 (106)
11 KOG4367|consensus 98.7 4.2E-08 9.1E-13 64.8 4.5 82 38-124 450-531 (699)
12 KOG0196|consensus 98.5 2.1E-06 4.5E-11 61.1 10.5 97 25-123 330-439 (996)
13 KOG4258|consensus 98.3 6.9E-06 1.5E-10 58.7 8.8 79 39-120 841-920 (1025)
14 PF01108 Tissue_fac: Tissue fa 97.9 0.00045 9.8E-09 38.0 9.0 83 26-112 21-105 (107)
15 KOG4802|consensus 97.6 0.00089 1.9E-08 44.8 7.8 100 7-114 236-342 (516)
16 KOG4258|consensus 97.0 0.0025 5.4E-08 46.4 5.4 57 10-71 597-653 (1025)
17 KOG4222|consensus 96.9 0.0028 6.1E-08 47.4 5.4 85 38-123 653-741 (1281)
18 PF09067 EpoR_lig-bind: Erythr 96.8 0.029 6.4E-07 30.7 8.3 81 26-110 7-94 (104)
19 KOG4152|consensus 96.2 0.073 1.6E-06 37.3 8.1 110 4-117 668-791 (830)
20 PF10179 DUF2369: Uncharacteri 95.4 0.44 9.5E-06 31.3 10.1 36 87-122 261-296 (300)
21 PF07495 Y_Y_Y: Y_Y_Y domain; 94.6 0.25 5.4E-06 24.3 6.7 28 87-115 30-57 (66)
22 PLN02533 probable purple acid 93.2 2 4.3E-05 29.8 11.2 85 26-123 40-134 (427)
23 KOG4152|consensus 92.0 0.19 4.2E-06 35.4 3.0 34 90-123 651-684 (830)
24 KOG4228|consensus 91.4 0.53 1.2E-05 36.0 4.8 103 6-122 150-252 (1087)
25 KOG4802|consensus 87.4 1.9 4.1E-05 29.7 4.7 31 85-115 208-238 (516)
26 PF10179 DUF2369: Uncharacteri 87.0 2 4.3E-05 28.4 4.5 31 79-109 8-38 (300)
27 KOG3834|consensus 84.5 4.3 9.4E-05 28.1 5.3 70 33-103 68-137 (462)
28 PF11344 DUF3146: Protein of u 84.5 0.95 2.1E-05 23.2 1.8 14 93-106 67-80 (80)
29 KOG3632|consensus 79.8 22 0.00048 27.9 7.7 54 12-67 756-814 (1335)
30 KOG1948|consensus 71.1 48 0.001 25.9 8.7 25 83-107 943-967 (1165)
31 PF09240 IL6Ra-bind: Interleuk 68.9 16 0.00035 19.6 9.9 80 30-112 2-87 (99)
32 TIGR00868 hCaCC calcium-activa 68.2 55 0.0012 25.4 8.7 73 39-111 767-854 (863)
33 KOG4806|consensus 65.0 13 0.00027 25.4 3.5 36 88-123 412-447 (454)
34 cd05851 Ig3_Contactin-1 Third 64.5 19 0.0004 18.7 5.3 31 86-116 53-83 (88)
35 PF07353 Uroplakin_II: Uroplak 62.1 19 0.00042 21.5 3.5 25 85-109 101-125 (184)
36 PF10333 Pga1: GPI-Mannosyltra 61.9 16 0.00034 22.4 3.3 23 83-105 63-85 (180)
37 PF04775 Bile_Hydr_Trans: Acyl 61.0 23 0.0005 20.1 3.7 25 86-110 5-29 (126)
38 PF00907 T-box: T-box; InterP 59.0 22 0.00047 21.6 3.6 24 85-108 32-55 (184)
39 PF09423 PhoD: PhoD-like phosp 57.3 22 0.00047 24.9 3.8 20 86-105 64-83 (453)
40 TIGR03000 plancto_dom_1 Planct 52.6 31 0.00068 17.8 3.0 27 82-108 25-51 (75)
41 cd00182 TBOX T-box DNA binding 44.0 47 0.001 20.5 3.3 22 86-107 35-56 (188)
42 KOG3632|consensus 42.6 21 0.00045 28.0 2.0 73 38-116 589-662 (1335)
43 PF13754 Big_3_4: Bacterial Ig 42.5 40 0.00086 15.9 4.6 27 88-115 16-42 (54)
44 smart00425 TBOX Domain first f 42.4 51 0.0011 20.4 3.4 22 86-107 34-55 (190)
45 KOG4806|consensus 41.5 65 0.0014 22.2 3.9 30 80-109 164-193 (454)
46 PF13750 Big_3_3: Bacterial Ig 41.2 46 0.001 19.8 3.0 23 90-112 116-138 (158)
47 cd05893 Ig_Palladin_C C-termin 41.2 32 0.00069 17.3 2.1 27 87-113 42-68 (75)
48 cd05730 Ig3_NCAM-1_like Third 38.3 61 0.0013 16.8 5.7 29 85-113 57-85 (95)
49 PF13620 CarboxypepD_reg: Carb 37.6 26 0.00056 17.6 1.4 24 82-106 34-57 (82)
50 cd05760 Ig2_PTK7 Second immuno 36.6 59 0.0013 16.2 6.2 35 86-120 38-72 (77)
51 PF11811 DUF3331: Domain of un 36.6 75 0.0016 17.3 3.8 19 32-50 17-36 (96)
52 cd05748 Ig_Titin_like Immunogl 36.2 57 0.0012 15.9 5.5 28 85-112 39-66 (74)
53 PF00801 PKD: PKD domain; Int 35.9 47 0.001 16.2 2.2 16 96-111 51-66 (69)
54 PF14292 SusE: SusE outer memb 33.0 93 0.002 17.4 8.6 30 39-70 43-73 (122)
55 KOG0613|consensus 32.8 2.8E+02 0.0061 22.8 6.4 46 26-72 139-184 (1205)
56 smart00089 PKD Repeats in poly 32.5 57 0.0012 16.2 2.2 17 93-110 52-68 (79)
57 cd05870 Ig5_NCAM-2 Fifth immun 32.2 83 0.0018 16.5 3.6 29 86-114 64-92 (98)
58 PF05345 He_PIG: Putative Ig d 31.1 64 0.0014 14.9 2.5 11 98-108 37-47 (49)
59 cd05765 Ig_3 Subgroup of the i 30.8 76 0.0016 15.6 2.8 27 86-112 47-73 (81)
60 cd00146 PKD polycystic kidney 30.5 62 0.0013 16.2 2.2 19 93-112 54-72 (81)
61 PF12929 Mid1: Stretch-activat 30.3 1.3E+02 0.0027 21.4 4.0 40 85-124 186-229 (427)
62 cd05858 Ig3_FGFR-2 Third immun 29.5 89 0.0019 16.0 3.1 31 86-116 55-85 (90)
63 PF14686 fn3_3: Polysaccharide 29.1 74 0.0016 17.1 2.3 21 84-105 48-68 (95)
64 cd08544 Reeler Reeler, the N-t 28.9 1.1E+02 0.0025 17.3 3.3 18 40-59 95-112 (135)
65 cd05864 Ig2_VEGFR-2 Second imm 28.6 85 0.0018 15.5 4.1 30 86-115 34-63 (70)
66 cd05854 Ig6_Contactin-2 Sixth 27.3 98 0.0021 15.8 5.7 35 86-120 47-81 (85)
67 COG3536 Uncharacterized protei 27.3 97 0.0021 17.4 2.5 30 80-109 52-81 (120)
68 COG3422 Uncharacterized conser 26.6 71 0.0015 15.6 1.7 14 95-108 11-24 (59)
69 PF08329 ChitinaseA_N: Chitina 26.5 77 0.0017 18.4 2.2 26 94-120 80-105 (133)
70 PF01186 Lysyl_oxidase: Lysyl 26.2 85 0.0018 19.8 2.4 29 86-115 150-180 (205)
71 KOG4680|consensus 25.8 1.5E+02 0.0033 17.5 3.6 26 86-111 108-133 (153)
72 KOG3585|consensus 25.7 97 0.0021 21.0 2.9 23 85-107 57-79 (328)
73 PF13205 Big_5: Bacterial Ig-l 25.6 78 0.0017 16.8 2.1 15 91-105 70-84 (107)
74 cd05876 Ig3_L1-CAM Third immun 25.1 97 0.0021 15.0 5.2 28 85-112 35-62 (71)
75 cd05867 Ig4_L1-CAM_like Fourth 24.7 1E+02 0.0022 15.1 4.6 26 86-111 41-66 (76)
76 cd05745 Ig3_Peroxidasin Third 24.6 1E+02 0.0022 15.1 4.4 27 86-112 40-66 (74)
77 cd05856 Ig2_FGFRL1-like Second 24.2 1E+02 0.0022 15.0 4.5 26 86-111 48-73 (82)
78 KOG1378|consensus 24.2 1.4E+02 0.003 21.4 3.4 34 85-123 108-141 (452)
79 cd04975 Ig4_SCFR_like Fourth i 23.6 1.3E+02 0.0029 16.1 3.8 28 86-113 65-92 (101)
80 PF14299 PP2: Phloem protein 2 23.0 1.8E+02 0.0038 17.2 4.9 34 87-120 50-84 (154)
81 cd02856 Glycogen_debranching_e 22.8 1.4E+02 0.003 16.0 3.0 19 87-105 48-66 (103)
82 cd05725 Ig3_Robo Third immunog 22.6 1.1E+02 0.0023 14.6 5.3 27 86-112 35-61 (69)
83 cd05744 Ig_Myotilin_C_like Imm 22.4 1.2E+02 0.0025 15.0 2.9 26 87-112 42-67 (75)
84 cd05869 Ig5_NCAM-1 Fifth immun 22.2 1.4E+02 0.0029 15.6 3.4 28 86-113 63-90 (97)
85 cd05732 Ig5_NCAM-1_like Fifth 22.0 1.3E+02 0.0028 15.4 3.3 27 86-112 62-88 (96)
86 cd05746 Ig4_Peroxidasin Fourth 21.8 1.1E+02 0.0025 14.6 2.8 28 86-113 36-63 (69)
87 cd04978 Ig4_L1-NrCAM_like Four 21.5 1.2E+02 0.0026 14.7 4.7 27 86-112 41-67 (76)
88 PF14250 AbrB-like: AbrB-like 21.3 1.2E+02 0.0027 15.4 2.1 41 54-103 23-63 (71)
89 PF02014 Reeler: Reeler domain 21.3 1.7E+02 0.0037 16.5 4.3 18 40-59 99-116 (132)
90 PHA02579 7 baseplate wedge sub 21.1 4.2E+02 0.0091 20.9 7.2 69 32-107 10-86 (1030)
91 cd05731 Ig3_L1-CAM_like Third 20.9 1.2E+02 0.0025 14.4 4.3 27 86-112 36-62 (71)
92 cd04968 Ig3_Contactin_like Thi 20.2 1.4E+02 0.0031 15.1 6.1 30 85-114 52-81 (88)
No 1
>KOG4221|consensus
Probab=99.79 E-value=2.2e-18 Score=122.28 Aligned_cols=120 Identities=28% Similarity=0.431 Sum_probs=105.7
Q ss_pred CcCCCCCCCCCCcEEEEceecCCCCCCCCcceEEEeecCCeEEEEEEecCCCCCCCeeeEEEEEEEECCCCCCcceeEec
Q psy5696 2 LNWLARPEPQSTIVTILTMYNISMPSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYESLESDTK 81 (125)
Q Consensus 2 ~~~~~g~~~~s~~~~~~t~~~~~~p~~~P~~~~~~~~~~~~~~l~W~~p~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~ 81 (125)
+-|++|.|..|..+.++|..+ .|..||.++.+...+++++.|.|.+|+.+..++.+.+|+|.|++..... +.....+
T Consensus 593 A~N~~G~g~sS~~i~V~Tlsd--~PsaPP~Nl~lev~sStsVrVsW~pP~~~t~ng~itgYkIRy~~~~~~~-~~~~t~v 669 (1381)
T KOG4221|consen 593 AYNSAGSGVSSADITVRTLSD--VPSAPPQNLSLEVVSSTSVRVSWLPPPSETQNGQITGYKIRYRKLSRED-EVNETVV 669 (1381)
T ss_pred EecCCCCCCCCCceEEEeccC--CCCCCCcceEEEecCCCeEEEEccCCCcccccceEEEEEEEecccCccc-ccceeec
Confidence 357899999999999999999 9999999999999999999999999987778999999999998654331 1334555
Q ss_pred CCCcCeEEEcCCCCCCeEEEEEEEecCCCCCCCCccEEeeccC
Q psy5696 82 DTSSLSASLQGLGKFTNYSIQVMAFTQAGDGTLSDVIFCRTLE 124 (125)
Q Consensus 82 ~~~~~~~~i~~L~p~~~y~v~v~a~~~~g~g~~s~~~~~~t~~ 124 (125)
..+.+++++.+|+|.+.|.|+|.|.+..|.|++|.++.+.|++
T Consensus 670 ~~n~~~~l~~~Lep~T~Y~vrIsa~t~nGtGpaS~w~~aeT~~ 712 (1381)
T KOG4221|consen 670 KGNTTQYLFNGLEPNTQYRVRISAMTVNGTGPASEWVSAETPE 712 (1381)
T ss_pred ccchhhhHhhcCCCCceEEEEEEEeccCCCCCcccceeccCcc
Confidence 5678899999999999999999999999999999999999875
No 2
>KOG3513|consensus
Probab=99.76 E-value=2.7e-17 Score=116.37 Aligned_cols=118 Identities=24% Similarity=0.314 Sum_probs=100.8
Q ss_pred CcCCCCCCCCCCcEEEEceecCCCCCCCCcceEEEeecCCeEEEEEEecCCCCCCCeeeEEEEEEEECCCCCCcceeEec
Q psy5696 2 LNWLARPEPQSTIVTILTMYNISMPSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYESLESDTK 81 (125)
Q Consensus 2 ~~~~~g~~~~s~~~~~~t~~~~~~p~~~P~~~~~~~~~~~~~~l~W~~p~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~ 81 (125)
+-|.+|.|+.+..+.+.+.|+ .|+.+|..+.+...+.+.+.|.|++| ...+|.+.+|+|.|++....+........
T Consensus 797 a~N~~GeGp~s~~~v~~S~Ed--~P~~ap~~~~~~~~s~s~~~v~W~~~--~~~nG~l~gY~v~Y~~~~~~~~~~~~~~i 872 (1051)
T KOG3513|consen 797 AINDQGEGPESQVTVGYSGED--EPPVAPTKLSAKPLSSSEVNLSWKPP--LWDNGKLTGYEVKYWKINEKEGSLSRVQI 872 (1051)
T ss_pred EecCCCCCCCCceEEEEcCCC--CCCCCCccceeecccCceEEEEecCc--CccCCccceeEEEEEEcCCCcccccceee
Confidence 345699999999999999999 99999999999999999999999998 55569999999999986654332333445
Q ss_pred CCCcCeEEEcCCCCCCeEEEEEEEecCCCCCCCCccEEeecc
Q psy5696 82 DTSSLSASLQGLGKFTNYSIQVMAFTQAGDGTLSDVIFCRTL 123 (125)
Q Consensus 82 ~~~~~~~~i~~L~p~~~y~v~v~a~~~~g~g~~s~~~~~~t~ 123 (125)
.++.++..|.+|++.+.|+|.|+|+|.+|.|+.|......|.
T Consensus 873 ~~~~~~~~ltgL~~~T~Y~~~vrA~nsaG~Gp~s~~~~~tt~ 914 (1051)
T KOG3513|consen 873 AGNRTSWRLTGLEPNTKYRFYVRAYTSAGGGPASSEENVTTK 914 (1051)
T ss_pred cCCcceEeeeCCCCCceEEEEEEEecCCCCCCCccceecccc
Confidence 588899999999999999999999999999999987776554
No 3
>PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes []. They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A ....
Probab=99.64 E-value=1e-14 Score=76.96 Aligned_cols=84 Identities=29% Similarity=0.503 Sum_probs=68.9
Q ss_pred CCcceEEEeecCCeEEEEEEecCCCCCCCeeeEEEEEEEECCCCCCcceeEecCCCcCeEEEcCCCCCCeEEEEEEEecC
Q psy5696 29 PPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYESLESDTKDTSSLSASLQGLGKFTNYSIQVMAFTQ 108 (125)
Q Consensus 29 ~P~~~~~~~~~~~~~~l~W~~p~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~y~v~v~a~~~ 108 (125)
+|.++.+.....+++.|.|..| ...++.+.+|.|.|........ ............+.|.+|+|++.|.|+|+|.+.
T Consensus 2 ~P~~l~v~~~~~~sv~v~W~~~--~~~~~~~~~y~v~~~~~~~~~~-~~~~~~~~~~~~~~i~~L~p~t~Y~~~v~a~~~ 78 (85)
T PF00041_consen 2 APENLSVSNISPTSVTVSWKPP--SSGNGPITGYRVEYRSVNSTSD-WQEVTVPGNETSYTITGLQPGTTYEFRVRAVNS 78 (85)
T ss_dssp SSEEEEEEEECSSEEEEEEEES--SSTSSSESEEEEEEEETTSSSE-EEEEEEETTSSEEEEESCCTTSEEEEEEEEEET
T ss_pred cCcCeEEEECCCCEEEEEEECC--CCCCCCeeEEEEEEEeccccee-eeeeeeeeeeeeeeeccCCCCCEEEEEEEEEeC
Confidence 5678999999999999999998 4667899999999987765521 233445556669999999999999999999999
Q ss_pred CCCCCCC
Q psy5696 109 AGDGTLS 115 (125)
Q Consensus 109 ~g~g~~s 115 (125)
.|.|++|
T Consensus 79 ~g~g~~S 85 (85)
T PF00041_consen 79 DGEGPPS 85 (85)
T ss_dssp TEEEEEE
T ss_pred CcCcCCC
Confidence 9988764
No 4
>KOG0196|consensus
Probab=99.59 E-value=6e-14 Score=97.30 Aligned_cols=108 Identities=31% Similarity=0.346 Sum_probs=90.2
Q ss_pred CCCCcEEEEceecCCCCCCCCcceEEEeecCCeEEEEEEecCCCCCCCeeeEEEEEEEECCCCCCcceeEecCCCcCeEE
Q psy5696 10 PQSTIVTILTMYNISMPSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYESLESDTKDTSSLSAS 89 (125)
Q Consensus 10 ~~s~~~~~~t~~~~~~p~~~P~~~~~~~~~~~~~~l~W~~p~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (125)
+....++++|.+. +|+..+ .++.......++.|+|..| +..+|.|..|+|.|.+....+ ..........+...
T Consensus 429 ~~~a~vnItt~qa--~ps~V~-~~r~~~~~~~sitlsW~~p--~~png~ildYEvky~ek~~~e--~~~~~~~t~~~~~t 501 (996)
T KOG0196|consen 429 RQFASVNITTNQA--APSPVS-VLRQVSRTSDSITLSWSEP--DQPNGVILDYEVKYYEKDEDE--RSYSTLKTKTTTAT 501 (996)
T ss_pred CcceeEEeecccc--CCCccc-eEEEeeeccCceEEecCCC--CCCCCcceeEEEEEeeccccc--cceeEEecccceEE
Confidence 3455788999888 887554 6888888899999999998 788999999999999876432 23345556677889
Q ss_pred EcCCCCCCeEEEEEEEecCCCCCCCCccEEeeccC
Q psy5696 90 LQGLGKFTNYSIQVMAFTQAGDGTLSDVIFCRTLE 124 (125)
Q Consensus 90 i~~L~p~~~y~v~v~a~~~~g~g~~s~~~~~~t~~ 124 (125)
|.+|+|++.|.|+|||+..+|.|++|....++|.+
T Consensus 502 i~gL~p~t~YvfqVRarT~aG~G~~S~~~~fqT~~ 536 (996)
T KOG0196|consen 502 ITGLKPGTVYVFQVRARTAAGYGPYSGKHEFQTLP 536 (996)
T ss_pred eeccCCCcEEEEEEEEecccCCCCCCCceeeeecC
Confidence 99999999999999999999999999999998875
No 5
>KOG4221|consensus
Probab=99.55 E-value=2e-13 Score=97.86 Aligned_cols=112 Identities=30% Similarity=0.442 Sum_probs=94.0
Q ss_pred CcCCCCCCCCCCcEEEEceecCCCCCCCCcceEEEeecCCeEEEEEEecCCCCCCCeeeEEEEEEEECCCCCCcceeEec
Q psy5696 2 LNWLARPEPQSTIVTILTMYNISMPSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYESLESDTK 81 (125)
Q Consensus 2 ~~~~~g~~~~s~~~~~~t~~~~~~p~~~P~~~~~~~~~~~~~~l~W~~p~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~ 81 (125)
+.|..|.|..+..+.+.|... .|..+.+...+..++.+.|.+| ...+++|++|++.|.+.+.. ....+
T Consensus 502 A~n~~g~g~sS~pLkV~t~pE------gp~~~~a~ats~~ti~v~WepP--~~~n~~I~~yk~~ys~~~~~----~~~~~ 569 (1381)
T KOG4221|consen 502 AKNEAGSGESSAPLKVTTQPE------GPVQLQAYATSPTTILVTWEPP--PFGNGPITGYKLFYSEDDTG----KELRV 569 (1381)
T ss_pred ccCcccCCccCCceEEecCCC------CCccccccccCcceEEEEecCC--CCCCCCceEEEEEEEcCCCC----ceEEE
Confidence 567799999999999888533 2334888888899999999998 67899999999999876333 23455
Q ss_pred CCCcCeEEEcCCCCCCeEEEEEEEecCCCCCCCCccEEeeccCC
Q psy5696 82 DTSSLSASLQGLGKFTNYSIQVMAFTQAGDGTLSDVIFCRTLED 125 (125)
Q Consensus 82 ~~~~~~~~i~~L~p~~~y~v~v~a~~~~g~g~~s~~~~~~t~~~ 125 (125)
..+.+.+.|.+|++++.|.|+|.|+|.+|.|.-|..+.+.|.+|
T Consensus 570 ~~n~~e~ti~gL~k~TeY~~~vvA~N~~G~g~sS~~i~V~Tlsd 613 (1381)
T KOG4221|consen 570 ENNATEYTINGLEKYTEYSIRVVAYNSAGSGVSSADITVRTLSD 613 (1381)
T ss_pred ecCccEEEeecCCCccceEEEEEEecCCCCCCCCCceEEEeccC
Confidence 56788999999999999999999999999999999999998765
No 6
>KOG3513|consensus
Probab=99.51 E-value=3.8e-13 Score=95.90 Aligned_cols=121 Identities=26% Similarity=0.305 Sum_probs=97.3
Q ss_pred CcCCCCCCCCCCc-EEEEceecCCCCCCCCcceEEEeecCCeEEEEEEecCCCCCCCeeeEEEEEEEECCCC-CCcceeE
Q psy5696 2 LNWLARPEPQSTI-VTILTMYNISMPSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDW-YESLESD 79 (125)
Q Consensus 2 ~~~~~g~~~~s~~-~~~~t~~~~~~p~~~P~~~~~~~~~~~~~~l~W~~p~~~~~~~~i~~y~v~~~~~~~~-~~~~~~~ 79 (125)
+.|+.|.|.+|.. ..++|.++ +|...|.++.......+.+.|+|++.+....+|+-.+|+|.|+..+.. .+. ...
T Consensus 693 AvN~iG~gePS~pS~~~rT~ea--~P~~~P~nv~g~g~~~~eLvItW~Pl~~~~qNG~gfgY~Vswr~~g~~~~W~-~~~ 769 (1051)
T KOG3513|consen 693 AVNSIGIGEPSPPSEKVRTPEA--APSVNPSNVKGGGGSPTELVITWEPLPEEEQNGPGFGYRVSWRPQGADKEWK-EVI 769 (1051)
T ss_pred EEcccccCCCCCCccceecCCC--CCccCCccccccCCCCceEEEEeccCCHHHccCCCceEEEEEEeCCCCcccc-eeE
Confidence 5678999988876 56899999 999999999999999999999999998777789999999999987654 221 223
Q ss_pred ecCCCcCeEEE--cCCCCCCeEEEEEEEecCCCCCCCCccEEeeccCC
Q psy5696 80 TKDTSSLSASL--QGLGKFTNYSIQVMAFTQAGDGTLSDVIFCRTLED 125 (125)
Q Consensus 80 ~~~~~~~~~~i--~~L~p~~~y~v~v~a~~~~g~g~~s~~~~~~t~~~ 125 (125)
+...+...+.+ ...+|++.|.++|+|+|..|.|+.+..+.+.+.||
T Consensus 770 v~~~d~~~~V~~~~st~~~tpyevKVqa~N~~GeGp~s~~~v~~S~Ed 817 (1051)
T KOG3513|consen 770 VSNQDQPRYVVSNESTEPFTPYEVKVQAINDQGEGPESQVTVGYSGED 817 (1051)
T ss_pred ecccCCceEEEcCCCCCCcceeEEEEEEecCCCCCCCCceEEEEcCCC
Confidence 33333445544 44556999999999999999999999888887765
No 7
>cd00063 FN3 Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.
Probab=99.27 E-value=4.8e-10 Score=59.14 Aligned_cols=90 Identities=29% Similarity=0.412 Sum_probs=63.7
Q ss_pred CCcceEEEeecCCeEEEEEEecCCCCCCCeeeEEEEEEEECCCCCCcceeEecCCCcCeEEEcCCCCCCeEEEEEEEecC
Q psy5696 29 PPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYESLESDTKDTSSLSASLQGLGKFTNYSIQVMAFTQ 108 (125)
Q Consensus 29 ~P~~~~~~~~~~~~~~l~W~~p~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~y~v~v~a~~~ 108 (125)
+|.++.+......++.|.|..+. ..++.+.+|.+.+........ ............+.+.+|.|++.|.|+|++.+.
T Consensus 3 ~p~~~~~~~~~~~~~~v~W~~~~--~~~~~~~~y~v~~~~~~~~~~-~~~~~~~~~~~~~~i~~l~p~~~Y~~~v~a~~~ 79 (93)
T cd00063 3 PPTNLRVTDVTSTSVTLSWTPPE--DDGGPITGYVVEYREKGSGDW-KEVEVTPGSETSYTLTGLKPGTEYEFRVRAVNG 79 (93)
T ss_pred CCCCcEEEEecCCEEEEEECCCC--CCCCcceeEEEEEeeCCCCCC-EEeeccCCcccEEEEccccCCCEEEEEEEEECC
Confidence 45567777777789999999873 333667899999987642210 111111136678899999999999999999998
Q ss_pred CCCCCCCccEEee
Q psy5696 109 AGDGTLSDVIFCR 121 (125)
Q Consensus 109 ~g~g~~s~~~~~~ 121 (125)
.|.|.++..+.+.
T Consensus 80 ~~~~~~s~~~~~~ 92 (93)
T cd00063 80 GGESPPSESVTVT 92 (93)
T ss_pred CccCCCccccccc
Confidence 8888777654443
No 8
>KOG4222|consensus
Probab=98.90 E-value=2.1e-08 Score=72.59 Aligned_cols=110 Identities=29% Similarity=0.349 Sum_probs=84.4
Q ss_pred CCCCCcEEEEceecCCCCCCCCcce---EEEeecCCeEEEEEEecCCCCCCCeeeEEEEEEEECCCCCCcceeEecCCCc
Q psy5696 9 EPQSTIVTILTMYNISMPSLPPENI---ACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYESLESDTKDTSS 85 (125)
Q Consensus 9 ~~~s~~~~~~t~~~~~~p~~~P~~~---~~~~~~~~~~~l~W~~p~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~ 85 (125)
|..+.+..+.|.+. .|..+|.++ ....-+.+...|.|.+|+....++.+++|+|++...... ............
T Consensus 730 g~pS~sk~alt~e~--~PSapp~~~~~~s~~~~n~Ta~~Vsw~~pp~d~~ng~~qg~ki~~~~~e~t-r~h~n~t~~a~~ 806 (1281)
T KOG4222|consen 730 GAPSNSKTALTLEE--PPSAPPQGVQHVSKGSYNGTAGSVSWAPPPADVQNGILQGYKIECSGGEKT-RIHINKTTNART 806 (1281)
T ss_pred cCCccccccccccc--CCCCCCCCccccccccCCCceeeEEecCCcccccCCcccceeEEeecCccc-cccccccccCCC
Confidence 45677888899998 899899884 444445678999999998778899999999988643321 001122334667
Q ss_pred CeEEEcCCCCCCeEEEEEEEecCCCCCCCCccEEee
Q psy5696 86 LSASLQGLGKFTNYSIQVMAFTQAGDGTLSDVIFCR 121 (125)
Q Consensus 86 ~~~~i~~L~p~~~y~v~v~a~~~~g~g~~s~~~~~~ 121 (125)
...+|.+|.++..|.|+|.+++.+|.|..+++..+-
T Consensus 807 ~sv~i~~l~~g~ay~vtv~a~T~aGvG~~s~p~~~~ 842 (1281)
T KOG4222|consen 807 GSVTIGNLVTGIAYSVTVAARTGAGVGVKSPPQPIV 842 (1281)
T ss_pred CceEeccccccceEEEEEeeecCCccCCCCCCeeee
Confidence 788999999999999999999999999888765543
No 9
>smart00060 FN3 Fibronectin type 3 domain. One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.
Probab=98.81 E-value=9.2e-07 Score=45.10 Aligned_cols=76 Identities=33% Similarity=0.396 Sum_probs=47.5
Q ss_pred cceEEEeecCCeEEEEEEecCCCCCCCeeeEEEEEEEECCCCC-CcceeEecCCCcCeEEEcCCCCCCeEEEEEEEecCC
Q psy5696 31 ENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWY-ESLESDTKDTSSLSASLQGLGKFTNYSIQVMAFTQA 109 (125)
Q Consensus 31 ~~~~~~~~~~~~~~l~W~~p~~~~~~~~i~~y~v~~~~~~~~~-~~~~~~~~~~~~~~~~i~~L~p~~~y~v~v~a~~~~ 109 (125)
..+.+......++.|.|.++. .... .+|.+.|....... ..............+.+.+|.+++.|.|+|+|.+..
T Consensus 5 ~~~~~~~~~~~~~~v~W~~~~--~~~~--~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~v~v~a~~~~ 80 (83)
T smart00060 5 SNLRVTDVTSTSVTLSWEPPP--DDGI--TGYIVGYRVEYREEGSSWKEVNVTPSSTSYTLTGLKPGTEYEFRVRAVNGA 80 (83)
T ss_pred CcEEEEEEeCCEEEEEECCCC--CCCC--CccEEEEEEEEecCCCccEEEEecCCccEEEEeCcCCCCEEEEEEEEEccc
Confidence 346666666669999999663 2221 45666555322110 001112222225788999999999999999999875
Q ss_pred C
Q psy5696 110 G 110 (125)
Q Consensus 110 g 110 (125)
|
T Consensus 81 g 81 (83)
T smart00060 81 G 81 (83)
T ss_pred C
Confidence 5
No 10
>PF09294 Interfer-bind: Interferon-alpha/beta receptor, fibronectin type III; InterPro: IPR015373 Members of this family adopt a secondary structure consisting of seven beta-strands arranged in an immunoglobulin-like beta-sandwich, in a Greek-key topology. They are required for binding to interferon-alpha []. ; PDB: 1A21_A 3LQM_B 3ELA_T 1AHW_C 2A2Q_T 1TFH_B 1FAK_T 1WSS_T 1W2K_T 2FIR_T ....
Probab=98.79 E-value=2.1e-07 Score=51.04 Aligned_cols=90 Identities=23% Similarity=0.284 Sum_probs=59.8
Q ss_pred CCcceEEEeecCCeEEEEEEecCC----CCCC------CeeeEEEEEEEECCCCCCcceeEecCCCcCeEEEcCCCCCCe
Q psy5696 29 PPENIACSSVTSTTLKITWETVPN----EARN------GIIQGYKVVYYPAEDWYESLESDTKDTSSLSASLQGLGKFTN 98 (125)
Q Consensus 29 ~P~~~~~~~~~~~~~~l~W~~p~~----~~~~------~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~ 98 (125)
||. +.+ ....+.+.|.+.+|.. ...+ ..-..|.|.+++.++. ............+.|.+|+|++.
T Consensus 5 PP~-v~v-~~~~~~l~V~i~~P~~~~~~~~~~~~l~~~~~~~~Y~v~~~~~~~~---~~~~~~~~~~~~~~l~~L~p~t~ 79 (106)
T PF09294_consen 5 PPS-VNV-SSCGGSLHVTIKPPMTPLRAGGKNSSLRDIYPSLSYNVSYWKNGSN---EKKKEIETKNSSVTLSDLKPGTN 79 (106)
T ss_dssp SSE-EEE-EEETTEEEEEEEESEEEEECSSSEEEHHHHHGG-EEEEEEEETTTS---CEEEEEESSSEEEEEES--TTSE
T ss_pred CCE-EEE-EECCCEEEEEEECCCcccccCCCCCcHHHhCCCeEEEEEEEeCCCc---cceEEEeecCCEEEEeCCCCCCC
Confidence 564 766 4457889999998840 0111 0124699999988766 24445556677889999999999
Q ss_pred EEEEEEEecC--CCCCCCCccEEeecc
Q psy5696 99 YSIQVMAFTQ--AGDGTLSDVIFCRTL 123 (125)
Q Consensus 99 y~v~v~a~~~--~g~g~~s~~~~~~t~ 123 (125)
|+|+|++... ...|.+|.+.+++|.
T Consensus 80 YCv~V~~~~~~~~~~s~~S~~~C~~t~ 106 (106)
T PF09294_consen 80 YCVSVQAFSPSQNKNSQPSEPQCITTT 106 (106)
T ss_dssp EEEEEEEEECSSTEEEEEBSEEEEE--
T ss_pred EEEEEEEEeccCCCcCCCCCCEeEeCc
Confidence 9999999443 335888888888763
No 11
>KOG4367|consensus
Probab=98.65 E-value=4.2e-08 Score=64.85 Aligned_cols=82 Identities=17% Similarity=0.252 Sum_probs=67.9
Q ss_pred ecCCeEEEEEEecCCCCCCCeeeEEEEEEEECCCCCCcceeEecCCCcCeEEEcCCCCCCeEEEEEEEecCCCCCCCCcc
Q psy5696 38 VTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYESLESDTKDTSSLSASLQGLGKFTNYSIQVMAFTQAGDGTLSDV 117 (125)
Q Consensus 38 ~~~~~~~l~W~~p~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~y~v~v~a~~~~g~g~~s~~ 117 (125)
...++++|.|+.|+ ....+..||.++.....+. .+..+..+..+-.+|.+|.-.+.|..+|.++|..|.+++|..
T Consensus 450 t~nns~t~~wkqp~--~~~~~~dg~~leld~g~~g---~frevy~g~etmctvdglhfns~y~arvka~n~tg~s~ys~t 524 (699)
T KOG4367|consen 450 THNNSATLSWKQPP--LSTVPADGYILELDDGNGG---QFREVYVGKETMCTVDGLHFNSTYNARVKAFNKTGVSPYSKT 524 (699)
T ss_pred ccCCceEEEeecCC--CCCCCCcceEEEeecCCCC---ceeEEEecCceeEEecceecchhHHHHHHHhhccCCCcccce
Confidence 45678999999874 3455677999988765444 456677788889999999999999999999999999999999
Q ss_pred EEeeccC
Q psy5696 118 IFCRTLE 124 (125)
Q Consensus 118 ~~~~t~~ 124 (125)
+.++|.+
T Consensus 525 l~lqts~ 531 (699)
T KOG4367|consen 525 LVLQTSE 531 (699)
T ss_pred eEeeecc
Confidence 9988874
No 12
>KOG0196|consensus
Probab=98.55 E-value=2.1e-06 Score=61.07 Aligned_cols=97 Identities=20% Similarity=0.290 Sum_probs=65.3
Q ss_pred CCCCCCcceEEEeecCCeEEEEEEecCCCCCCCeeeEEEEEEEECCCCC-Cc--------ceeEecCCCcCeEEEcCCCC
Q psy5696 25 MPSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWY-ES--------LESDTKDTSSLSASLQGLGK 95 (125)
Q Consensus 25 ~p~~~P~~~~~~~~~~~~~~l~W~~p~~~~~~~~i~~y~v~~~~~~~~~-~~--------~~~~~~~~~~~~~~i~~L~p 95 (125)
.|+.+|.++... .+.+++.|.|.+|.....+.++ -|.|.|.+..... .. ........+.+.+.+.+|.+
T Consensus 330 ~PPSaP~nlis~-vn~Ts~~L~W~~P~d~GGR~Di-~y~v~Ck~c~~~~~~C~~Cg~~V~f~P~q~gLt~~~V~v~~L~a 407 (996)
T KOG0196|consen 330 RPPSAPRNLISN-VNGTSLILEWSPPADTGGREDI-TYNVICKKCGGGRGACEPCGDNVRFTPRQRGLTETSVTVSDLLA 407 (996)
T ss_pred CCCCccceeeee-cccceEEEEecCCcccCCCcce-EEEEEeeccCCCCCccccCCCCceECCCCCCcccceEEEecccc
Confidence 466788887555 7899999999999644556666 6777776543210 00 11122335667889999999
Q ss_pred CCeEEEEEEEecCCCC-CCC---CccEEeecc
Q psy5696 96 FTNYSIQVMAFTQAGD-GTL---SDVIFCRTL 123 (125)
Q Consensus 96 ~~~y~v~v~a~~~~g~-g~~---s~~~~~~t~ 123 (125)
.++|.|.|.|.|+... ++. ...++++|.
T Consensus 408 h~~YTFeV~AvNgVS~lsp~~~~~a~vnItt~ 439 (996)
T KOG0196|consen 408 HTNYTFEVEAVNGVSDLSPFPRQFASVNITTN 439 (996)
T ss_pred ccccEEEEEEeecccccCCCCCcceeEEeecc
Confidence 9999999999998743 332 234565554
No 13
>KOG4258|consensus
Probab=98.32 E-value=6.9e-06 Score=58.69 Aligned_cols=79 Identities=23% Similarity=0.338 Sum_probs=59.4
Q ss_pred cCCeEEEEEEecCCCCCCCeeeEEEEEEEECCCCCCccee-EecCCCcCeEEEcCCCCCCeEEEEEEEecCCCCCCCCcc
Q psy5696 39 TSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYESLES-DTKDTSSLSASLQGLGKFTNYSIQVMAFTQAGDGTLSDV 117 (125)
Q Consensus 39 ~~~~~~l~W~~p~~~~~~~~i~~y~v~~~~~~~~~~~~~~-~~~~~~~~~~~i~~L~p~~~y~v~v~a~~~~g~g~~s~~ 117 (125)
....+.|.|.+| ++.+|.|..|.|.|+..+........ .........+.+.+|.+ +.|.++|+|.+-+|.|+|..+
T Consensus 841 ~~~~v~l~w~EP--~~pNGli~~Y~Vk~r~~~~et~v~cvsR~~~~k~~gv~l~~l~~-G~y~~~vratSlaGng~~t~~ 917 (1025)
T KOG4258|consen 841 EMNSVILRWLEP--KEPNGLILNYEVKYRRNGDETHVECVSRMDYAKAGGVYLKRLNP-GNYSVRVRATSLAGNGSWTES 917 (1025)
T ss_pred CcceEEEecCCC--CCCCccEEEEEEEEeeccCcchhhhhhhhhhhhcCceEEEecCC-CcEEEEEEEEeeccCCCCcCC
Confidence 678899999998 88899999999999976554211111 11223455677889988 599999999999999998765
Q ss_pred EEe
Q psy5696 118 IFC 120 (125)
Q Consensus 118 ~~~ 120 (125)
+.+
T Consensus 918 ~~~ 920 (1025)
T KOG4258|consen 918 VIF 920 (1025)
T ss_pred cce
Confidence 443
No 14
>PF01108 Tissue_fac: Tissue factor; PDB: 3OG4_B 3OG6_B 1FYH_E 1FG9_D 1JRH_I 3DGC_R 3DLQ_R 1LQS_R 1Y6M_R 1J7V_R ....
Probab=97.90 E-value=0.00045 Score=37.96 Aligned_cols=83 Identities=17% Similarity=0.142 Sum_probs=53.2
Q ss_pred CCCCCcceEEEeecCCeEEEEEEecCCCCCCCeeeEEEEEEEECCCCCCcceeEecCCCcCeEEEcCCC--CCCeEEEEE
Q psy5696 26 PSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYESLESDTKDTSSLSASLQGLG--KFTNYSIQV 103 (125)
Q Consensus 26 p~~~P~~~~~~~~~~~~~~l~W~~p~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~--p~~~y~v~v 103 (125)
...+|.++.+.+. .-...|.|.+++ .. ..-..|.|+|...+...+...........+.+.|.+.- ....|.+||
T Consensus 21 ~lp~P~nv~~~s~-nf~~iL~W~~~~--~~-~~~~~ytVq~~~~~~~~W~~v~~C~~i~~~~Cdlt~~~~~~~~~Y~~rV 96 (107)
T PF01108_consen 21 SLPAPQNVTVDSV-NFKHILRWDPGP--GS-PPNVTYTVQYKKYGSSSWKDVPGCQNITETSCDLTDETSDPSESYYARV 96 (107)
T ss_dssp SGSSCEEEEEEEE-TTEEEEEEEEST--TS-SSTEEEEEEEEESSTSCEEEECCEEEESSSEEECTTCCTTTTSEEEEEE
T ss_pred cCCCCCeeEEEEE-CCceEEEeCCCC--CC-CCCeEEEEEEEecCCcceeeccceecccccceeCcchhhcCcCCEEEEE
Confidence 3447888888876 445789999853 22 23358999998433331111111334556788886644 678999999
Q ss_pred EEecCCCCC
Q psy5696 104 MAFTQAGDG 112 (125)
Q Consensus 104 ~a~~~~g~g 112 (125)
+|..+...+
T Consensus 97 ~A~~~~~~S 105 (107)
T PF01108_consen 97 RAEVGNQTS 105 (107)
T ss_dssp EEEETTEEE
T ss_pred EEEeCCccC
Confidence 999866544
No 15
>KOG4802|consensus
Probab=97.56 E-value=0.00089 Score=44.75 Aligned_cols=100 Identities=17% Similarity=0.172 Sum_probs=58.9
Q ss_pred CCCCCCCcEEEEceecCCCCCCCCcceEEEeec--CC-eEEEEEEecCCCCCCCeeeEEEEEEEECC-CC---CCcceeE
Q psy5696 7 RPEPQSTIVTILTMYNISMPSLPPENIACSSVT--ST-TLKITWETVPNEARNGIIQGYKVVYYPAE-DW---YESLESD 79 (125)
Q Consensus 7 g~~~~s~~~~~~t~~~~~~p~~~P~~~~~~~~~--~~-~~~l~W~~p~~~~~~~~i~~y~v~~~~~~-~~---~~~~~~~ 79 (125)
|.+.+|......- +. .++.+|.++.+.... +. ...|-|.|+ ..+=++..|+|.|...- +. +......
T Consensus 236 GFs~PSkpf~ssk-~p--kaPp~P~dl~l~~v~~dG~~~~~v~w~P~---~sdlPv~~Yki~Ws~~v~s~k~~m~tks~~ 309 (516)
T KOG4802|consen 236 GFSEPSKPFPSSK-NP--KAPPSPNDLKLIGVQFDGRYMLKVVWCPS---KSDLPVEKYKITWSLYVNSAKASMITKSSY 309 (516)
T ss_pred ccCCCCCCCCCCC-CC--CCCcCcccceeeeeeecceEEEEEEeCCC---CCCCcceeeEEEeehhhhhhhhhcccccce
Confidence 4455555544333 23 334467777776542 22 255677664 34557889999886332 11 1101111
Q ss_pred ecCCCcCeEEEcCCCCCCeEEEEEEEecCCCCCCC
Q psy5696 80 TKDTSSLSASLQGLGKFTNYSIQVMAFTQAGDGTL 114 (125)
Q Consensus 80 ~~~~~~~~~~i~~L~p~~~y~v~v~a~~~~g~g~~ 114 (125)
.. ......|..|.|+..|-|.|+|....|.+..
T Consensus 310 ~k--~thq~si~~L~Pns~Y~VevqAi~y~g~~rL 342 (516)
T KOG4802|consen 310 VK--DTHQFSIKELLPNSSYYVEVQAISYLGSRRL 342 (516)
T ss_pred ee--ccchhhhhhcCCCCeEEEEEEEEEeccCccc
Confidence 22 2224449999999999999999998887643
No 16
>KOG4258|consensus
Probab=96.96 E-value=0.0025 Score=46.37 Aligned_cols=57 Identities=26% Similarity=0.491 Sum_probs=44.8
Q ss_pred CCCCcEEEEceecCCCCCCCCcceEEEeecCCeEEEEEEecCCCCCCCeeeEEEEEEEECCC
Q psy5696 10 PQSTIVTILTMYNISMPSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAED 71 (125)
Q Consensus 10 ~~s~~~~~~t~~~~~~p~~~P~~~~~~~~~~~~~~l~W~~p~~~~~~~~i~~y~v~~~~~~~ 71 (125)
..|+..-++|..+ .|. +|..+...+.+++.+.|.|.+| ..++|.+..|.|.|.....
T Consensus 597 A~S~I~YvqT~~~--~Ps-pPl~~ls~snsSsqi~l~W~pP--~~pNG~lt~Ylv~wer~~~ 653 (1025)
T KOG4258|consen 597 AKSKIGYVQTLPD--IPS-PPLDVLSKSNSSSQILLKWKPP--SQPNGNLTHYLVVWERQAE 653 (1025)
T ss_pred cccceEEEEecCC--CCC-CcchhhhccCcchheeEEecCC--CCCCCceeEEEEEEEeccC
Confidence 3577788899888 776 6666655566677899999998 7889999999999986543
No 17
>KOG4222|consensus
Probab=96.91 E-value=0.0028 Score=47.42 Aligned_cols=85 Identities=22% Similarity=0.333 Sum_probs=58.0
Q ss_pred ecCCeEEEEEEecCCCCCCCeeeEEEEEEEECCCCCCc-ceeEecCCCcCeEEEcCCCCCCeEEEEEEEecCCC---CCC
Q psy5696 38 VTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYES-LESDTKDTSSLSASLQGLGKFTNYSIQVMAFTQAG---DGT 113 (125)
Q Consensus 38 ~~~~~~~l~W~~p~~~~~~~~i~~y~v~~~~~~~~~~~-~~~~~~~~~~~~~~i~~L~p~~~y~v~v~a~~~~g---~g~ 113 (125)
++.++|.+.|..+. .+....|.+|+|.|+........ ....+......++.+.+|.|+++|.|+++-+...| .|.
T Consensus 653 L~asslr~~w~~~k-q~~~~~i~g~~I~~r~~~~~~a~~s~~~v~~~t~~s~v~~nl~p~t~ye~f~~Pf~~~~~s~~g~ 731 (1281)
T KOG4222|consen 653 LNASSLRLGWTKDK-QHGSQYIQGYRISYRSLGSQLAQWSNAGVTVPTPESVVVPNLKPGTNYEFFVRPFFPHGYSIQGA 731 (1281)
T ss_pred cchhheeeeeeeec-ccCcccccceEEEeccCccccccccccceeccCCcceeccccCCCccceeeccCccCCCcceecC
Confidence 45678999998863 44567899999999976542110 12233345567888999999999999999887643 244
Q ss_pred CCccEEeecc
Q psy5696 114 LSDVIFCRTL 123 (125)
Q Consensus 114 ~s~~~~~~t~ 123 (125)
.+....+.|.
T Consensus 732 pS~sk~alt~ 741 (1281)
T KOG4222|consen 732 PSNSKTALTL 741 (1281)
T ss_pred Cccccccccc
Confidence 4444444444
No 18
>PF09067 EpoR_lig-bind: Erythropoietin receptor, ligand binding; InterPro: IPR015152 Members of this entry include the growth hormone and erythropoietin receptors. The latter interacts with erythropoietin (EPO), with subsequent initiation of the downstream chain of events associated with binding of EPO to the receptor, including EPO-induced erythroblast proliferation and differentiation through induction of the JAK2/STAT5 signalling cascade. The domain adopts a secondary structure composed of a short amino-terminal helix, followed by two beta-sandwich regions []. ; PDB: 3NCB_B 3NCF_B 3NCE_B 3N0P_B 3NCC_B 1BP3_B 3N06_B 3MZG_B 3D48_R 1F6F_C ....
Probab=96.80 E-value=0.029 Score=30.73 Aligned_cols=81 Identities=26% Similarity=0.308 Sum_probs=50.5
Q ss_pred CCCCCcceEEEeecCCeEEEEEEecCCCCCCCeeeEEEEEEEECCCCCCcceeEecCCCcCe-----EEEc--CCCCCCe
Q psy5696 26 PSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYESLESDTKDTSSLS-----ASLQ--GLGKFTN 98 (125)
Q Consensus 26 p~~~P~~~~~~~~~~~~~~l~W~~p~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~-----~~i~--~L~p~~~ 98 (125)
|+..|.++...+.....+.-.|.+. +..+.. ..|.+.|...+.. +..+.......... ..+. +..-+..
T Consensus 7 ~p~~P~~~~C~S~~~etftC~W~~g--~~~~l~-~~y~L~Y~~~~~~-~~eCp~~~~~~~ns~~~~~C~F~~~~t~lf~~ 82 (104)
T PF09067_consen 7 PPEKPENLKCFSREMETFTCFWEPG--SEGNLP-TNYTLFYKKEGEE-WKECPDYSTSGPNSTVRHICYFPKSDTSLFVP 82 (104)
T ss_dssp HCCCCEEEEEEBSSSS-EEEEEEEE--SSSTST-CEEEEEEEETTSE-EEEESESSTTETTEEEEEEEEE-CCGCSSSSE
T ss_pred CCCCCccCccCCCCCCcEEEEeeCC--CCCCCC-CcEEEEEEeCCCC-CccCCCeEecCCCCceeEEEEcCCCCeEEEEE
Confidence 4557788888877788899999886 333322 2399988876521 11222222222233 4444 6777899
Q ss_pred EEEEEEEecCCC
Q psy5696 99 YSIQVMAFTQAG 110 (125)
Q Consensus 99 y~v~v~a~~~~g 110 (125)
|.|+|.+.+..|
T Consensus 83 y~i~V~a~~~~~ 94 (104)
T PF09067_consen 83 YCIQVEATNALG 94 (104)
T ss_dssp EEEEEEEEETTE
T ss_pred EEEEEEeccCCC
Confidence 999999999776
No 19
>KOG4152|consensus
Probab=96.17 E-value=0.073 Score=37.31 Aligned_cols=110 Identities=17% Similarity=0.188 Sum_probs=62.2
Q ss_pred CCCCCCCCCCcEEEEceecCCCCCCCCcceEEEeecCCeEEEEEEecCCCCCCCeeeEEEEEEE--E---CCCCCCc-ce
Q psy5696 4 WLARPEPQSTIVTILTMYNISMPSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYY--P---AEDWYES-LE 77 (125)
Q Consensus 4 ~~~g~~~~s~~~~~~t~~~~~~p~~~P~~~~~~~~~~~~~~l~W~~p~~~~~~~~i~~y~v~~~--~---~~~~~~~-~~ 77 (125)
|..|.|+++....+.|..+ .-+..|+.+... .+...+.+.|++|. ....+.|..|..+.. . ....... ..
T Consensus 668 ng~G~gp~s~i~~~kTc~p--G~P~apS~~ri~-k~~eGi~l~weppt-~p~sg~Iieys~ylAi~tq~~~~~~sql~fm 743 (830)
T KOG4152|consen 668 NGKGPGPASTILKLKTCAP--GKPTAPSGARIK-KTIEGISLVWEPPT-KPGSGTIIEYSPYLAIITQAGATGVSQLPFM 743 (830)
T ss_pred eccCCCchhhheeeeeccC--CCCCCccccccc-ccccceeecccCCC-CCCCcceEEeehhhHhhhhhhccCcccccee
Confidence 5689999999999998755 333355554433 22446899999884 333677878876432 1 0111000 11
Q ss_pred eEecCCC--------cCeEEEcCCCCCCeEEEEEEEecCCCCCCCCcc
Q psy5696 78 SDTKDTS--------SLSASLQGLGKFTNYSIQVMAFTQAGDGTLSDV 117 (125)
Q Consensus 78 ~~~~~~~--------~~~~~i~~L~p~~~y~v~v~a~~~~g~g~~s~~ 117 (125)
...+... ..---+.+.-......|+|.|.|..|.|+....
T Consensus 744 r~ycg~~t~c~vt~g~l~tA~~d~t~~paivfri~aknekGyGpatqv 791 (830)
T KOG4152|consen 744 RSYCGIITTCVVTSGKLITAVPDITTGPAIVFRIVAKNEKGYGPATQV 791 (830)
T ss_pred eeecccceeeEEecccceeeccccccCcceEEEEEecCCCCCCcceEE
Confidence 1111111 111112333445567899999999999876543
No 20
>PF10179 DUF2369: Uncharacterised conserved protein (DUF2369); InterPro: IPR019326 This is a proline-rich region of a group of proteins found from plants to fungi. The function is largely unknown, although the entry contains Fibronectin type-III domain-containing protein C4orf31, which promotes matrix assembly and cell adhesiveness.
Probab=95.40 E-value=0.44 Score=31.26 Aligned_cols=36 Identities=19% Similarity=0.274 Sum_probs=26.1
Q ss_pred eEEEcCCCCCCeEEEEEEEecCCCCCCCCccEEeec
Q psy5696 87 SASLQGLGKFTNYSIQVMAFTQAGDGTLSDVIFCRT 122 (125)
Q Consensus 87 ~~~i~~L~p~~~y~v~v~a~~~~g~g~~s~~~~~~t 122 (125)
...|.+|+|+..|-|.|.+.-..|.+-.=..+.++|
T Consensus 261 tetI~~L~PG~~Yl~dV~~~~~~G~sl~Y~s~~VkT 296 (300)
T PF10179_consen 261 TETIKGLKPGTTYLFDVYVNGPSGQSLPYRSKWVKT 296 (300)
T ss_pred eeecccCCCCcEEEEEEEEecCCCceeecceEEEEe
Confidence 347999999999999999997666543323344554
No 21
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=94.59 E-value=0.25 Score=24.28 Aligned_cols=28 Identities=25% Similarity=0.281 Sum_probs=20.4
Q ss_pred eEEEcCCCCCCeEEEEEEEecCCCCCCCC
Q psy5696 87 SASLQGLGKFTNYSIQVMAFTQAGDGTLS 115 (125)
Q Consensus 87 ~~~i~~L~p~~~y~v~v~a~~~~g~g~~s 115 (125)
.+.+.+|.| +.|.|+|+|.+..|.....
T Consensus 30 ~~~~~~L~~-G~Y~l~V~a~~~~~~~~~~ 57 (66)
T PF07495_consen 30 SISYTNLPP-GKYTLEVRAKDNNGKWSSD 57 (66)
T ss_dssp EEEEES--S-EEEEEEEEEEETTS-B-SS
T ss_pred EEEEEeCCC-EEEEEEEEEECCCCCcCcc
Confidence 888999988 5999999999988765433
No 22
>PLN02533 probable purple acid phosphatase
Probab=93.21 E-value=2 Score=29.83 Aligned_cols=85 Identities=21% Similarity=0.209 Sum_probs=48.8
Q ss_pred CCCCCcceEEEeecCCeEEEEEEecCCCCCCCeeeEEEEEEEECCCCCC-cc----eeE-----ecCCCcCeEEEcCCCC
Q psy5696 26 PSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYE-SL----ESD-----TKDTSSLSASLQGLGK 95 (125)
Q Consensus 26 p~~~P~~~~~~~~~~~~~~l~W~~p~~~~~~~~i~~y~v~~~~~~~~~~-~~----~~~-----~~~~~~~~~~i~~L~p 95 (125)
....|.++.+.-...+++.|+|... .... . .|.|........ .. ... ........+.|.+|+|
T Consensus 40 ~~~~P~qvhls~~~~~~m~V~W~T~--~~~~-~----~V~yG~~~~~l~~~a~g~~~~~~~~~~~~~g~iH~v~l~~L~p 112 (427)
T PLN02533 40 DPTHPDQVHISLVGPDKMRISWITQ--DSIP-P----SVVYGTVSGKYEGSANGTSSSYHYLLIYRSGQINDVVIGPLKP 112 (427)
T ss_pred CCCCCceEEEEEcCCCeEEEEEECC--CCCC-C----EEEEecCCCCCcceEEEEEEEEeccccccCCeEEEEEeCCCCC
Confidence 4446778888877788999999875 2222 1 244443221100 00 000 0112334578999999
Q ss_pred CCeEEEEEEEecCCCCCCCCccEEeecc
Q psy5696 96 FTNYSIQVMAFTQAGDGTLSDVIFCRTL 123 (125)
Q Consensus 96 ~~~y~v~v~a~~~~g~g~~s~~~~~~t~ 123 (125)
++.|..+|.. ...+....++|+
T Consensus 113 ~T~Y~Yrvg~------~~~s~~~~F~T~ 134 (427)
T PLN02533 113 NTVYYYKCGG------PSSTQEFSFRTP 134 (427)
T ss_pred CCEEEEEECC------CCCccceEEECC
Confidence 9999999842 123455666665
No 23
>KOG4152|consensus
Probab=92.05 E-value=0.19 Score=35.36 Aligned_cols=34 Identities=24% Similarity=0.270 Sum_probs=29.5
Q ss_pred EcCCCCCCeEEEEEEEecCCCCCCCCccEEeecc
Q psy5696 90 LQGLGKFTNYSIQVMAFTQAGDGTLSDVIFCRTL 123 (125)
Q Consensus 90 i~~L~p~~~y~v~v~a~~~~g~g~~s~~~~~~t~ 123 (125)
-..|-++..|+|+|.|+|+.|.|+++....++|-
T Consensus 651 k~~lv~Gq~yrfrV~aIng~G~gp~s~i~~~kTc 684 (830)
T KOG4152|consen 651 KTSLVTGQAYRFRVTAINGKGPGPASTILKLKTC 684 (830)
T ss_pred ccccccccceeeeeeeeeccCCCchhhheeeeec
Confidence 3667889999999999999999999988777763
No 24
>KOG4228|consensus
Probab=91.40 E-value=0.53 Score=35.95 Aligned_cols=103 Identities=20% Similarity=0.167 Sum_probs=64.5
Q ss_pred CCCCCCCCcEEEEceecCCCCCCCCcceEEEeecCCeEEEEEEecCCCCCCCeeeEEEEEEEECCCCCCcceeEecCCCc
Q psy5696 6 ARPEPQSTIVTILTMYNISMPSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYESLESDTKDTSS 85 (125)
Q Consensus 6 ~g~~~~s~~~~~~t~~~~~~p~~~P~~~~~~~~~~~~~~l~W~~p~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~ 85 (125)
.|.++.+..+.+.+.+. .|..+. .....+.+++.|.++. ...+..|++.+...+.. ....+.....
T Consensus 150 ~~~~~~~t~i~i~~~~~--~p~~~~-----~~~~~~~it~~w~~~~----~~~~~~ykl~~~~~d~~---~~~~v~~~~~ 215 (1087)
T KOG4228|consen 150 PGLGPPSTYIQITTNAN--SPIQPG-----EEEEYTTITGSWSPPH----AVSLDTYKLLHLDPDTG---YEISVTLTPP 215 (1087)
T ss_pred cccCCCCceEEEeccCC--CCCCCC-----cceEEEEEEecCCCCC----cccchhhhhhhcCCccc---ceeeeeccCC
Confidence 56677666777787777 666554 3445678999998773 23466787776554322 2233333344
Q ss_pred CeEEEcCCCCCCeEEEEEEEecCCCCCCCCccEEeec
Q psy5696 86 LSASLQGLGKFTNYSIQVMAFTQAGDGTLSDVIFCRT 122 (125)
Q Consensus 86 ~~~~i~~L~p~~~y~v~v~a~~~~g~g~~s~~~~~~t 122 (125)
......++.+...+.+++.+....+.+.....+..++
T Consensus 216 ~~~~t~~~~~~~~~~~~~ae~~~~~~~~~~a~i~~r~ 252 (1087)
T KOG4228|consen 216 GSGGTGDLGPPSISRFKCAEPDRGPLGSSTAEIEARQ 252 (1087)
T ss_pred CCCcccCCCCcccccccccCccccccCCCCcceEEEe
Confidence 4555677777788888887776666555555555443
No 25
>KOG4802|consensus
Probab=87.37 E-value=1.9 Score=29.68 Aligned_cols=31 Identities=16% Similarity=0.078 Sum_probs=25.1
Q ss_pred cCeEEEcCCCCCCeEEEEEEEecCCCCCCCC
Q psy5696 85 SLSASLQGLGKFTNYSIQVMAFTQAGDGTLS 115 (125)
Q Consensus 85 ~~~~~i~~L~p~~~y~v~v~a~~~~g~g~~s 115 (125)
...+.+.++.|+.=|.|+|.|.|..|.-.++
T Consensus 208 e~~~~~t~~rPgRwyefrvaavn~~G~rGFs 238 (516)
T KOG4802|consen 208 ENTYIFTDMRPGRWYEFRVAAVNAYGFRGFS 238 (516)
T ss_pred CceeeeeecCcceeEEEEEeeeecccccccC
Confidence 3367789999999999999999987754443
No 26
>PF10179 DUF2369: Uncharacterised conserved protein (DUF2369); InterPro: IPR019326 This is a proline-rich region of a group of proteins found from plants to fungi. The function is largely unknown, although the entry contains Fibronectin type-III domain-containing protein C4orf31, which promotes matrix assembly and cell adhesiveness.
Probab=87.00 E-value=2 Score=28.36 Aligned_cols=31 Identities=23% Similarity=0.187 Sum_probs=26.4
Q ss_pred EecCCCcCeEEEcCCCCCCeEEEEEEEecCC
Q psy5696 79 DTKDTSSLSASLQGLGKFTNYSIQVMAFTQA 109 (125)
Q Consensus 79 ~~~~~~~~~~~i~~L~p~~~y~v~v~a~~~~ 109 (125)
.++.+..+.+.|.+|+|++.|.|.|-+.+..
T Consensus 8 ~vCvg~~t~~t~~~L~p~t~YyfdVF~vn~~ 38 (300)
T PF10179_consen 8 IVCVGQKTNQTLSGLKPDTTYYFDVFVVNQL 38 (300)
T ss_pred EEEcCCCceEEeccCCCCCeEEEEEEEEECC
Confidence 4456778899999999999999999998863
No 27
>KOG3834|consensus
Probab=84.51 E-value=4.3 Score=28.13 Aligned_cols=70 Identities=17% Similarity=0.235 Sum_probs=42.4
Q ss_pred eEEEeecCCeEEEEEEecCCCCCCCeeeEEEEEEEECCCCCCcceeEecCCCcCeEEEcCCCCCCeEEEEE
Q psy5696 33 IACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYESLESDTKDTSSLSASLQGLGKFTNYSIQV 103 (125)
Q Consensus 33 ~~~~~~~~~~~~l~W~~p~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~y~v~v 103 (125)
+.+.......+.+.|-.+. ..-+|.+.||.|.|+......+..+........+-..+-+|.+++.|.+-+
T Consensus 68 ltv~n~kt~~~R~v~I~ps-~~wggqllGvsvrFcsf~~A~~~vwHvl~V~p~SPaalAgl~~~~DYivG~ 137 (462)
T KOG3834|consen 68 LTVYNSKTQEVRIVEIVPS-NNWGGQLLGVSVRFCSFDGAVESVWHVLSVEPNSPAALAGLRPYTDYIVGI 137 (462)
T ss_pred EEEEecccceeEEEEeccc-ccccccccceEEEeccCccchhheeeeeecCCCCHHHhcccccccceEecc
Confidence 4444444556788887764 333455889999998764432222222222233456678888888888755
No 28
>PF11344 DUF3146: Protein of unknown function (DUF3146); InterPro: IPR021492 This family of proteins with unknown function appear to be restricted to Cyanobacteria.
Probab=84.50 E-value=0.95 Score=23.18 Aligned_cols=14 Identities=29% Similarity=0.240 Sum_probs=12.4
Q ss_pred CCCCCeEEEEEEEe
Q psy5696 93 LGKFTNYSIQVMAF 106 (125)
Q Consensus 93 L~p~~~y~v~v~a~ 106 (125)
|+|+..|.|.|+|.
T Consensus 67 LEpGgdY~Ftirak 80 (80)
T PF11344_consen 67 LEPGGDYSFTIRAK 80 (80)
T ss_pred ccCCCceEEEEecC
Confidence 78999999999873
No 29
>KOG3632|consensus
Probab=79.84 E-value=22 Score=27.86 Aligned_cols=54 Identities=20% Similarity=0.372 Sum_probs=38.6
Q ss_pred CCcEEEEceecCCCCCCCCcceEEEe-ecCCeEEEEEEecCCCC---CC-CeeeEEEEEEE
Q psy5696 12 STIVTILTMYNISMPSLPPENIACSS-VTSTTLKITWETVPNEA---RN-GIIQGYKVVYY 67 (125)
Q Consensus 12 s~~~~~~t~~~~~~p~~~P~~~~~~~-~~~~~~~l~W~~p~~~~---~~-~~i~~y~v~~~ 67 (125)
...+.++|..+ .|+.+|.++.+.. .+++.+.++|.+|-.+. .+ -.+.+|.|+..
T Consensus 756 ~atv~f~tLpA--GppappldV~vE~g~spg~l~vswrPptldsag~sngv~vtgYavyad 814 (1335)
T KOG3632|consen 756 QATVLFRTLPA--GPPAPPLDVKVETGGSPGRLEVSWRPPTLDSAGCSNGVAVTGYAVYAD 814 (1335)
T ss_pred ccceeeecccC--CCCCCchheeeecCCCCceeeeeccCceeccccccCceeeeeeeeeeC
Confidence 34567788777 7888998888875 35678999999884322 12 36788988764
No 30
>KOG1948|consensus
Probab=71.06 E-value=48 Score=25.87 Aligned_cols=25 Identities=16% Similarity=0.304 Sum_probs=21.4
Q ss_pred CCcCeEEEcCCCCCCeEEEEEEEec
Q psy5696 83 TSSLSASLQGLGKFTNYSIQVMAFT 107 (125)
Q Consensus 83 ~~~~~~~i~~L~p~~~y~v~v~a~~ 107 (125)
..+..|.|++|.|++.|.+++.+.-
T Consensus 943 denG~yRiRGL~Pdc~Y~V~vk~~~ 967 (1165)
T KOG1948|consen 943 DENGTYRIRGLLPDCEYQVHVKSYA 967 (1165)
T ss_pred ccCCcEEEeccCCCceEEEEEeecc
Confidence 3446799999999999999999884
No 31
>PF09240 IL6Ra-bind: Interleukin-6 receptor alpha chain, binding; InterPro: IPR015321 Members of this entry adopt a structure consisting of an immunoglobulin-like beta-sandwich, with seven strands in two beta-sheets, in a Greek-key topology. They are required for binding to the cytokine Interleukin-6 []. ; PDB: 1N26_A 1P9M_C 3LB6_C 1PVH_A 3L5H_A 1BQU_A 1I1R_A 3QT2_B 3BPN_C 3BPO_C ....
Probab=68.86 E-value=16 Score=19.56 Aligned_cols=80 Identities=18% Similarity=0.245 Sum_probs=46.9
Q ss_pred CcceEEEeecCCeEEEEEEecCCCCCCCeeeEEEEEEEECCCCCCcceeEecC--CCcCeEEEcCCCC----CCeEEEEE
Q psy5696 30 PENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYESLESDTKD--TSSLSASLQGLGK----FTNYSIQV 103 (125)
Q Consensus 30 P~~~~~~~~~~~~~~l~W~~p~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~--~~~~~~~i~~L~p----~~~y~v~v 103 (125)
|.++.........+.-+|.+- ...... ..|.+.|+.........+..... +......+..... ...|.|.|
T Consensus 2 ~~nlsC~~~~~~~m~CtW~~g--~~~~~~-t~y~L~~~~~~~~~~~eC~~y~~~~~~~~gC~~~~~~~~~~~~~~~~v~V 78 (99)
T PF09240_consen 2 PQNLSCFIYNLEYMNCTWEPG--KEAPPD-TQYTLYYWYSPLEEEKECPHYSKDSGTRIGCQFPVSEIDSSEFSQYNVCV 78 (99)
T ss_dssp -EEEEEEEETTTEEEEEEECC--TTCSTT-EEEEEEEEETTSSSEEEESEEEESTSSEEEEEEESCTT-TTTTSEEEEEE
T ss_pred CeeCEEEEECCEEEEEEECCC--CCCCCc-ccEEEEEEcCCCCccccCCCccccCCceeEEEecCCCccccccceEEEEE
Confidence 456666666678899999763 222222 47888888755322112222211 2345556665555 34799999
Q ss_pred EEecCCCCC
Q psy5696 104 MAFTQAGDG 112 (125)
Q Consensus 104 ~a~~~~g~g 112 (125)
.+.+..|.-
T Consensus 79 ~~ss~~~~i 87 (99)
T PF09240_consen 79 NGSSSAGSI 87 (99)
T ss_dssp EEEETTEEE
T ss_pred EeccCCCcc
Confidence 998877643
No 32
>TIGR00868 hCaCC calcium-activated chloride channel protein 1. distributions. found a row in 1A13.INFO that was not parsed out
Probab=68.17 E-value=55 Score=25.45 Aligned_cols=73 Identities=16% Similarity=0.167 Sum_probs=41.8
Q ss_pred cCCeEEEEEEecCCCCCCCeeeEEEEEEEECCC----CCCc-ce---eEecC---CCcCe--EEEcCC--CCCCeEEEEE
Q psy5696 39 TSTTLKITWETVPNEARNGIIQGYKVVYYPAED----WYES-LE---SDTKD---TSSLS--ASLQGL--GKFTNYSIQV 103 (125)
Q Consensus 39 ~~~~~~l~W~~p~~~~~~~~i~~y~v~~~~~~~----~~~~-~~---~~~~~---~~~~~--~~i~~L--~p~~~y~v~v 103 (125)
....+.|+|..|......|....|.|.+...-. ..+. .. ....+ +..-. ++..+. +.++.|.|.+
T Consensus 767 ~~~~v~LsWTAPG~d~D~G~a~~y~ir~s~~~~~l~~~f~~a~~vn~~~~~P~~ags~e~~~f~~~~~~~~~~~~~~~ai 846 (863)
T TIGR00868 767 QGDNIILTWTAPGDVLDHGRADRYIIRISTSILDLRDDFNDATQVNTTDLIPKEANSKEVFVFKPEGIPIENGTDLFIAV 846 (863)
T ss_pred cCCEEEEEeeCCCccCCCCccceEEEEecCCHHHHHhhhccccccccCCcCCCCCCceeEEEEeCCcccccCCeEEEEEE
Confidence 455699999999755567888899998863210 0000 00 00111 11112 223332 2456899999
Q ss_pred EEecCCCC
Q psy5696 104 MAFTQAGD 111 (125)
Q Consensus 104 ~a~~~~g~ 111 (125)
+|....|.
T Consensus 847 ~a~d~~~~ 854 (863)
T TIGR00868 847 QAIDKANL 854 (863)
T ss_pred EEEccccc
Confidence 99998764
No 33
>KOG4806|consensus
Probab=65.01 E-value=13 Score=25.40 Aligned_cols=36 Identities=19% Similarity=0.183 Sum_probs=27.3
Q ss_pred EEEcCCCCCCeEEEEEEEecCCCCCCCCccEEeecc
Q psy5696 88 ASLQGLGKFTNYSIQVMAFTQAGDGTLSDVIFCRTL 123 (125)
Q Consensus 88 ~~i~~L~p~~~y~v~v~a~~~~g~g~~s~~~~~~t~ 123 (125)
-+|.+|.|+..|.+-|.|....|-.-+-..+.++|.
T Consensus 412 eTI~gL~PgssYlldv~a~~~~g~~lpyqa~~v~t~ 447 (454)
T KOG4806|consen 412 ETILGLMPGSSYLLDVTANLSMGKPLPYQALTVHTA 447 (454)
T ss_pred hhhcccccCceEEEEEEEcccCCccccceeEEEEec
Confidence 358999999999999999988776544444555553
No 34
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=64.48 E-value=19 Score=18.71 Aligned_cols=31 Identities=6% Similarity=-0.062 Sum_probs=23.7
Q ss_pred CeEEEcCCCCCCeEEEEEEEecCCCCCCCCc
Q psy5696 86 LSASLQGLGKFTNYSIQVMAFTQAGDGTLSD 116 (125)
Q Consensus 86 ~~~~i~~L~p~~~y~v~v~a~~~~g~g~~s~ 116 (125)
..+.|.++.+.-.-...+.|.|..|....+.
T Consensus 53 ~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~ 83 (88)
T cd05851 53 AVLKIFNIQPEDEGTYECEAENIKGKDKHQA 83 (88)
T ss_pred CEEEECcCChhhCEEEEEEEEcCCCceEEEE
Confidence 4677888888777788899999998654443
No 35
>PF07353 Uroplakin_II: Uroplakin II; InterPro: IPR009952 This family contains uroplakin II, which is approximately 180 residues long and seems to be restricted to mammals. Uroplakin II is an integral membrane protein, and is one of the components of the apical plaques of mammalian urothelium formed by the asymmetric unit membrane - this is believed to play a role in strengthening the urothelial apical surface to prevent the cells from rupturing during bladder distension [].; GO: 0016044 cellular membrane organization, 0030176 integral to endoplasmic reticulum membrane
Probab=62.13 E-value=19 Score=21.54 Aligned_cols=25 Identities=16% Similarity=0.095 Sum_probs=20.1
Q ss_pred cCeEEEcCCCCCCeEEEEEEEecCC
Q psy5696 85 SLSASLQGLGKFTNYSIQVMAFTQA 109 (125)
Q Consensus 85 ~~~~~i~~L~p~~~y~v~v~a~~~~ 109 (125)
-..|.+.+|.|++.|.|+-....+.
T Consensus 101 lsaYqVtNL~pGTkY~isY~Vtkgt 125 (184)
T PF07353_consen 101 LSAYQVTNLQPGTKYYISYLVTKGT 125 (184)
T ss_pred ceeEEeeccCCCcEEEEEEEEecCc
Confidence 3567899999999999987776543
No 36
>PF10333 Pga1: GPI-Mannosyltransferase II co-activator; InterPro: IPR019433 Pga1 is found only in yeasts and not in mammals. It localises in the ER as a glycosylated integral membrane protein. It binds to the GPI-mannosyltransferase II subunit of the GPI and it is responsible for the second mannose addition to GPI precursors. The GPI-anchoring complex is a glycolipid that functions as a membrane anchor for many cell-surface proteins [].
Probab=61.93 E-value=16 Score=22.39 Aligned_cols=23 Identities=17% Similarity=0.199 Sum_probs=19.7
Q ss_pred CCcCeEEEcCCCCCCeEEEEEEE
Q psy5696 83 TSSLSASLQGLGKFTNYSIQVMA 105 (125)
Q Consensus 83 ~~~~~~~i~~L~p~~~y~v~v~a 105 (125)
.....+.+.+|+++..|.++++-
T Consensus 63 ~~t~~V~L~nl~~~e~y~vKiCW 85 (180)
T PF10333_consen 63 GSTTYVELNNLQPGETYQVKICW 85 (180)
T ss_pred CceEEEEeccCCCCCeEEEEEEE
Confidence 45678889999999999999973
No 37
>PF04775 Bile_Hydr_Trans: Acyl-CoA thioester hydrolase/BAAT N-terminal region; InterPro: IPR006862 This entry presents the N-termini of acyl-CoA thioester hydrolase and bile acid-CoA:amino acid N-acetyltransferase (BAAT) []. This region is not thought to contain the active site of either enzyme. Thioesterase isoforms have been identified in peroxisomes, cytoplasm and mitochondria, where they are thought to have distinct functions in lipid metabolism []. For example, in peroxisomes, the hydrolase acts on bile-CoA esters [].; GO: 0016290 palmitoyl-CoA hydrolase activity, 0006629 lipid metabolic process; PDB: 3HLK_B 3K2I_B.
Probab=61.01 E-value=23 Score=20.14 Aligned_cols=25 Identities=12% Similarity=0.193 Sum_probs=16.9
Q ss_pred CeEEEcCCCCCCeEEEEEEEecCCC
Q psy5696 86 LSASLQGLGKFTNYSIQVMAFTQAG 110 (125)
Q Consensus 86 ~~~~i~~L~p~~~y~v~v~a~~~~g 110 (125)
..+.+.+|.|+..+.++.......|
T Consensus 5 ~~I~v~GL~p~~~vtl~a~~~~~~g 29 (126)
T PF04775_consen 5 VDIRVSGLPPGQEVTLRARLTDDNG 29 (126)
T ss_dssp -EEEEES--TT-EEEEEEEEE-TTS
T ss_pred eEEEEeCCCCCCEEEEEEEEEeCCC
Confidence 4678999999999999998886555
No 38
>PF00907 T-box: T-box; InterPro: IPR001699 Transcription factors of the T-box family are required both for early cell-fate decisions, such as those necessary for formation of the basic vertebrate body plan, and for differentiation and organogenesis []. The T-box is defined as the minimal region within the T-box protein that is both necessary and sufficient for sequence-specific DNA binding, all members of the family so far examined bind to the DNA consensus sequence TCACACCT. The T-box is a relatively large DNA-binding domain, generally comprising about a third of the entire protein (17-26 kDa). These genes were uncovered on the basis of similarity to the DNA binding domain [] of Mus musculus (Mouse) Brachyury (T) gene product, which similarity is the defining feature of the family. The Brachyury gene is named for its phenotype, which was identified 70 years ago as a mutant mouse strain with a short blunted tail. The gene, and its paralogues, have become a well-studied model for the family, and hence much of what is known about the T-box family is derived from the murine Brachyury gene. Consistent with its nuclear location, Brachyury protein has a sequence-specific DNA-binding activity and can act as a transcriptional regulator []. Homozygous mutants for the gene undergo extensive developmental anomalies, thus rendering the mutation lethal []. The postulated role of Brachyury is as a transcription factor, regulating the specification and differentiation of posterior mesoderm during gastrulation in a dose-dependent manner []. T-box proteins tend to be expressed in specific organs or cell types, especially during development, and they are generally required for the development of those tissues, for example, Brachyury is expressed in posterior mesoderm and in the developing notochord, and it is required for the formation of these cells in mice []. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1H6F_B 4A04_A 1XBR_B 2X6V_B 2X6U_A.
Probab=59.03 E-value=22 Score=21.60 Aligned_cols=24 Identities=29% Similarity=0.260 Sum_probs=18.2
Q ss_pred cCeEEEcCCCCCCeEEEEEEEecC
Q psy5696 85 SLSASLQGLGKFTNYSIQVMAFTQ 108 (125)
Q Consensus 85 ~~~~~i~~L~p~~~y~v~v~a~~~ 108 (125)
...+.|.+|+|...|.+.+.....
T Consensus 32 ~l~y~vsGL~p~~~Y~i~l~~~~~ 55 (184)
T PF00907_consen 32 TLEYSVSGLDPDSLYSISLHFERV 55 (184)
T ss_dssp -EEEEEESS-TTSEEEEEEEEEES
T ss_pred ccEEEecCCCCCcceEEEEEEEEe
Confidence 357889999999999998876553
No 39
>PF09423 PhoD: PhoD-like phosphatase; InterPro: IPR018946 This entry contains a number of putative proteins as well as Alkaline phosphatase D which catalyses the reaction: A phosphate monoester + H(2)O = an alcohol + phosphate ; PDB: 2YEQ_B.
Probab=57.27 E-value=22 Score=24.95 Aligned_cols=20 Identities=20% Similarity=0.325 Sum_probs=13.8
Q ss_pred CeEEEcCCCCCCeEEEEEEE
Q psy5696 86 LSASLQGLGKFTNYSIQVMA 105 (125)
Q Consensus 86 ~~~~i~~L~p~~~y~v~v~a 105 (125)
..+.|.+|+|++.|..++.+
T Consensus 64 ~~v~v~gL~p~t~Y~Y~~~~ 83 (453)
T PF09423_consen 64 VKVDVTGLQPGTRYYYRFVV 83 (453)
T ss_dssp EEEEE-S--TT-EEEEEEEE
T ss_pred eecccCCCCCCceEEEEEEE
Confidence 35789999999999999988
No 40
>TIGR03000 plancto_dom_1 Planctomycetes uncharacterized domain TIGR03000. Domains described by this model are found, so far, only in the Planctomycetes (Pirellula sp. strain 1 and Gemmata obscuriglobus), in up to six proteins per genome, and may be duplicated within a protein. The function is unknown.
Probab=52.56 E-value=31 Score=17.81 Aligned_cols=27 Identities=15% Similarity=0.015 Sum_probs=22.1
Q ss_pred CCCcCeEEEcCCCCCCeEEEEEEEecC
Q psy5696 82 DTSSLSASLQGLGKFTNYSIQVMAFTQ 108 (125)
Q Consensus 82 ~~~~~~~~i~~L~p~~~y~v~v~a~~~ 108 (125)
.+..+.|.-+.|.++..|..+|++...
T Consensus 25 ~G~~R~F~T~~L~~G~~y~Y~v~a~~~ 51 (75)
T TIGR03000 25 TGTVRTFTTPPLEAGKEYEYTVTAEYD 51 (75)
T ss_pred CccEEEEECCCCCCCCEEEEEEEEEEe
Confidence 355678888999999999999988654
No 41
>cd00182 TBOX T-box DNA binding domain of the T-box family of transcriptional regulators. The T-box family is an ancient group that appears to play a critical role in development in all animal species. These genes were uncovered on the basis of similarity to the DNA binding domain of murine Brachyury (T) gene product, the defining feature of the family. Common features shared by T-box family members are DNA-binding and transcriptional regulatory activity, a role in development and conserved expression patterns, most of the known genes in all species being expressed in mesoderm or mesoderm precursors.
Probab=43.95 E-value=47 Score=20.52 Aligned_cols=22 Identities=23% Similarity=0.304 Sum_probs=18.3
Q ss_pred CeEEEcCCCCCCeEEEEEEEec
Q psy5696 86 LSASLQGLGKFTNYSIQVMAFT 107 (125)
Q Consensus 86 ~~~~i~~L~p~~~y~v~v~a~~ 107 (125)
..+.|.+|+|...|.+.+....
T Consensus 35 l~~~vsGLdp~~~Y~v~l~~~~ 56 (188)
T cd00182 35 LKVKVSGLDPNALYSVLMDLVP 56 (188)
T ss_pred eEEEEeCCCcccceEEEEEEEE
Confidence 5778999999999998876554
No 42
>KOG3632|consensus
Probab=42.59 E-value=21 Score=28.01 Aligned_cols=73 Identities=14% Similarity=0.089 Sum_probs=39.9
Q ss_pred ecCCeEEEEEEecCCCCCCCeeeEEEEEEEECCCCCCcceeEecCCCcCeEEEcCCCC-CCeEEEEEEEecCCCCCCCCc
Q psy5696 38 VTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYESLESDTKDTSSLSASLQGLGK-FTNYSIQVMAFTQAGDGTLSD 116 (125)
Q Consensus 38 ~~~~~~~l~W~~p~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p-~~~y~v~v~a~~~~g~g~~s~ 116 (125)
....++.|.|++|.....-+...+|-+..... .+.....+..+...+..|.- ...|.+.|++..+.|.++...
T Consensus 589 qla~sv~vawepps~pP~~~~~~~~~~~v~~e------lrq~l~~gs~tka~~E~ld~~a~s~~isvq~ltSrGsqd~lr 662 (1335)
T KOG3632|consen 589 QLAGSVHVAWEPPSSPPFTAPARMIGATVLME------LRQTLYAGSLTKAMQESLDNSAHSGYISVQRLTSRGSQDQLR 662 (1335)
T ss_pred hhccceeeeccCCCCCCccccceeeeeecchh------hhhhcccccchHHHHhhccccCCceeeehhhhhccCCCCcce
Confidence 34568999999974333345566666543221 11122223333444444442 356777787887777665543
No 43
>PF13754 Big_3_4: Bacterial Ig-like domain (group 3)
Probab=42.50 E-value=40 Score=15.86 Aligned_cols=27 Identities=30% Similarity=0.352 Sum_probs=20.1
Q ss_pred EEEcCCCCCCeEEEEEEEecCCCCCCCC
Q psy5696 88 ASLQGLGKFTNYSIQVMAFTQAGDGTLS 115 (125)
Q Consensus 88 ~~i~~L~p~~~y~v~v~a~~~~g~g~~s 115 (125)
+.+..+ ....|.+.+.+...+|.....
T Consensus 16 ~t~~~~-~dG~y~itv~a~D~AGN~s~~ 42 (54)
T PF13754_consen 16 FTVPAL-ADGTYTITVTATDAAGNTSTS 42 (54)
T ss_pred EeCCCC-CCccEEEEEEEEeCCCCCCCc
Confidence 344555 578999999999999875444
No 44
>smart00425 TBOX Domain first found in the mice T locus (Brachyury) protein.
Probab=42.38 E-value=51 Score=20.37 Aligned_cols=22 Identities=23% Similarity=0.270 Sum_probs=18.1
Q ss_pred CeEEEcCCCCCCeEEEEEEEec
Q psy5696 86 LSASLQGLGKFTNYSIQVMAFT 107 (125)
Q Consensus 86 ~~~~i~~L~p~~~y~v~v~a~~ 107 (125)
..+.|.+|+|...|.+.+....
T Consensus 34 l~~~vsGLdp~~~Y~v~l~~~~ 55 (190)
T smart00425 34 LKYKVSGLDPNALYSVLMDLVP 55 (190)
T ss_pred eEEEEeCCCccCcEEEEEEEEE
Confidence 4678999999999998876554
No 45
>KOG4806|consensus
Probab=41.46 E-value=65 Score=22.24 Aligned_cols=30 Identities=13% Similarity=0.019 Sum_probs=23.8
Q ss_pred ecCCCcCeEEEcCCCCCCeEEEEEEEecCC
Q psy5696 80 TKDTSSLSASLQGLGKFTNYSIQVMAFTQA 109 (125)
Q Consensus 80 ~~~~~~~~~~i~~L~p~~~y~v~v~a~~~~ 109 (125)
.+.++...+.|.+|+|.+.|.|.|-..+..
T Consensus 164 iCig~~n~~~v~~L~pdt~Y~~dvFvv~~~ 193 (454)
T KOG4806|consen 164 ICIGNKNIFTVSDLKPDTQYYFDVFVVNIN 193 (454)
T ss_pred EEcCCccEEEhhhcCCCceEEEEEEEEecC
Confidence 444566688899999999999988777744
No 46
>PF13750 Big_3_3: Bacterial Ig-like domain (group 3)
Probab=41.23 E-value=46 Score=19.79 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=19.5
Q ss_pred EcCCCCCCeEEEEEEEecCCCCC
Q psy5696 90 LQGLGKFTNYSIQVMAFTQAGDG 112 (125)
Q Consensus 90 i~~L~p~~~y~v~v~a~~~~g~g 112 (125)
++.|..+..|.+.|.|....|..
T Consensus 116 fpsle~~~~YtLtV~a~D~aGN~ 138 (158)
T PF13750_consen 116 FPSLEADDSYTLTVSATDKAGNQ 138 (158)
T ss_pred cCCcCCCCeEEEEEEEEecCCCE
Confidence 46788899999999999988853
No 47
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=41.20 E-value=32 Score=17.28 Aligned_cols=27 Identities=26% Similarity=0.055 Sum_probs=21.4
Q ss_pred eEEEcCCCCCCeEEEEEEEecCCCCCC
Q psy5696 87 SASLQGLGKFTNYSIQVMAFTQAGDGT 113 (125)
Q Consensus 87 ~~~i~~L~p~~~y~v~v~a~~~~g~g~ 113 (125)
.+.|.++++.-.-...+.|.|..|.-.
T Consensus 42 ~L~I~~v~~~D~G~Y~C~A~N~~G~~~ 68 (75)
T cd05893 42 CLLIQGATKEDAGWYTVSAKNEAGIVS 68 (75)
T ss_pred EEEECCCCHHHCEEEEEEEEcCCCEEE
Confidence 467888888777777899999888543
No 48
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=38.34 E-value=61 Score=16.79 Aligned_cols=29 Identities=14% Similarity=0.226 Sum_probs=22.0
Q ss_pred cCeEEEcCCCCCCeEEEEEEEecCCCCCC
Q psy5696 85 SLSASLQGLGKFTNYSIQVMAFTQAGDGT 113 (125)
Q Consensus 85 ~~~~~i~~L~p~~~y~v~v~a~~~~g~g~ 113 (125)
...+.|.++...-.-...+.|.|..|...
T Consensus 57 ~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~ 85 (95)
T cd05730 57 GSEMTILDVDKLDEAEYTCIAENKAGEQE 85 (95)
T ss_pred CCEEEECCCChhhCEEEEEEEEcCCCeEE
Confidence 34677888887766778889999888643
No 49
>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A.
Probab=37.63 E-value=26 Score=17.62 Aligned_cols=24 Identities=29% Similarity=0.331 Sum_probs=15.8
Q ss_pred CCCcCeEEEcCCCCCCeEEEEEEEe
Q psy5696 82 DTSSLSASLQGLGKFTNYSIQVMAF 106 (125)
Q Consensus 82 ~~~~~~~~i~~L~p~~~y~v~v~a~ 106 (125)
....-.|.+.+|.+ ..|.+++.+.
T Consensus 34 Td~~G~f~~~~l~~-g~Y~l~v~~~ 57 (82)
T PF13620_consen 34 TDSDGRFSFEGLPP-GTYTLRVSAP 57 (82)
T ss_dssp --TTSEEEEEEE-S-EEEEEEEEBT
T ss_pred ECCCceEEEEccCC-EeEEEEEEEC
Confidence 34556888888988 6898887543
No 50
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=36.61 E-value=59 Score=16.18 Aligned_cols=35 Identities=14% Similarity=-0.026 Sum_probs=23.4
Q ss_pred CeEEEcCCCCCCeEEEEEEEecCCCCCCCCccEEe
Q psy5696 86 LSASLQGLGKFTNYSIQVMAFTQAGDGTLSDVIFC 120 (125)
Q Consensus 86 ~~~~i~~L~p~~~y~v~v~a~~~~g~g~~s~~~~~ 120 (125)
..+.|.++.+.-.-..++.|.|..|.-..+..+.+
T Consensus 38 ~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l 72 (77)
T cd05760 38 RTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTL 72 (77)
T ss_pred CEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEE
Confidence 46678888877667778888998885433333444
No 51
>PF11811 DUF3331: Domain of unknown function (DUF3331); InterPro: IPR021769 This family of proteins are functionally uncharacterised. This family is only found in bacteria. Proteins in this family vary in length from 96 to 160 amino acids.
Probab=36.56 E-value=75 Score=17.33 Aligned_cols=19 Identities=26% Similarity=0.494 Sum_probs=14.4
Q ss_pred ceEEEee-cCCeEEEEEEec
Q psy5696 32 NIACSSV-TSTTLKITWETV 50 (125)
Q Consensus 32 ~~~~~~~-~~~~~~l~W~~p 50 (125)
.+.+... +.+++.|.|.+|
T Consensus 17 ~I~vlEr~S~~t~~V~W~D~ 36 (96)
T PF11811_consen 17 RIRVLERPSDTTLSVSWSDP 36 (96)
T ss_pred EEEEEEecCCCEEEEEEECC
Confidence 4555554 788999999987
No 52
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=36.20 E-value=57 Score=15.89 Aligned_cols=28 Identities=14% Similarity=0.090 Sum_probs=21.6
Q ss_pred cCeEEEcCCCCCCeEEEEEEEecCCCCC
Q psy5696 85 SLSASLQGLGKFTNYSIQVMAFTQAGDG 112 (125)
Q Consensus 85 ~~~~~i~~L~p~~~y~v~v~a~~~~g~g 112 (125)
...+.|.++.+.-.-...+.|.|..|.-
T Consensus 39 ~~~L~I~~~~~~D~G~Y~C~a~N~~G~~ 66 (74)
T cd05748 39 STSLVIKNAERSDSGKYTLTLKNPAGEK 66 (74)
T ss_pred eEEEEECCCCcCcCEEEEEEEECCCccE
Confidence 4567788888877777888999988753
No 53
>PF00801 PKD: PKD domain; InterPro: IPR000601 The PKD (Polycystic Kidney Disease) domain was first identified in the Polycystic Kidney Disease protein, polycystin-1 (PDK1 gene), and contains an Ig-like fold consisting of a beta-sandwich of seven strands in two sheets with a Greek key topology, although some members have additional strands []. Polycystin-1 is a large cell-surface glycoprotein involved in adhesive protein-protein and protein-carbohydrate interactions; however it is not clear if the PKD domain mediates any of these interactions. PKD domains are also found in other proteins, usually in the extracellular parts of proteins involved in interactions with other proteins. For example, domains with a PKD-type fold are found in archaeal surface layer proteins that protect the cell from extreme environments [], and in the human VPS10 domain-containing receptor SorCS2 [].; PDB: 1B4R_A 2KZW_A 2C4X_A 2C26_A 2Y72_B 3JQU_A 3JS7_B 1WGO_A 1L0Q_A.
Probab=35.87 E-value=47 Score=16.16 Aligned_cols=16 Identities=13% Similarity=0.289 Sum_probs=13.4
Q ss_pred CCeEEEEEEEecCCCC
Q psy5696 96 FTNYSIQVMAFTQAGD 111 (125)
Q Consensus 96 ~~~y~v~v~a~~~~g~ 111 (125)
...|.|+|.+.+..|.
T Consensus 51 ~G~y~V~ltv~n~~g~ 66 (69)
T PF00801_consen 51 PGTYTVTLTVTNGVGS 66 (69)
T ss_dssp SEEEEEEEEEEETTSE
T ss_pred CeEEEEEEEEEECCCC
Confidence 3699999999998763
No 54
>PF14292 SusE: SusE outer membrane protein
Probab=33.05 E-value=93 Score=17.35 Aligned_cols=30 Identities=10% Similarity=0.234 Sum_probs=20.7
Q ss_pred cCCeEEEEEEecCCCCCCC-eeeEEEEEEEECC
Q psy5696 39 TSTTLKITWETVPNEARNG-IIQGYKVVYYPAE 70 (125)
Q Consensus 39 ~~~~~~l~W~~p~~~~~~~-~i~~y~v~~~~~~ 70 (125)
....+.+.|.++. .... ....|.+++...+
T Consensus 43 ~~~a~tftW~~~~--~~~~~a~v~Y~lq~~~~~ 73 (122)
T PF14292_consen 43 SDNAVTFTWTAAD--YGGPDAPVTYTLQFDKKG 73 (122)
T ss_pred CCceEEEEEECCc--cCCCCCceEEEEEEeccC
Confidence 4457999999873 3322 4558999887754
No 55
>KOG0613|consensus
Probab=32.85 E-value=2.8e+02 Score=22.85 Aligned_cols=46 Identities=20% Similarity=0.232 Sum_probs=29.3
Q ss_pred CCCCCcceEEEeecCCeEEEEEEecCCCCCCCeeeEEEEEEEECCCC
Q psy5696 26 PSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDW 72 (125)
Q Consensus 26 p~~~P~~~~~~~~~~~~~~l~W~~p~~~~~~~~i~~y~v~~~~~~~~ 72 (125)
|..+|.+-........-+...|..+. ......+..|.|..+..+..
T Consensus 139 pd~~~~~~~sv~~~~~~v~~~~~~~~-~d~~~k~~~~iie~~~~g~s 184 (1205)
T KOG0613|consen 139 PDPPPSNRESVLVHRARVLPAWRPPR-EDGGRKREEYIIERRQAGRS 184 (1205)
T ss_pred CCCCCCCccceeecCceecccccCCc-cCccceeecceEEEEeccCC
Confidence 44455544444455667888998875 44455677888887765543
No 56
>smart00089 PKD Repeats in polycystic kidney disease 1 (PKD1) and other proteins. Polycystic kidney disease 1 protein contains 14 repeats, present elsewhere such as in microbial collagenases.
Probab=32.54 E-value=57 Score=16.22 Aligned_cols=17 Identities=12% Similarity=0.294 Sum_probs=14.0
Q ss_pred CCCCCeEEEEEEEecCCC
Q psy5696 93 LGKFTNYSIQVMAFTQAG 110 (125)
Q Consensus 93 L~p~~~y~v~v~a~~~~g 110 (125)
..+ ..|.|++.+.+..|
T Consensus 52 ~~~-G~y~v~l~v~n~~g 68 (79)
T smart00089 52 TKP-GTYTVTLTVTNAVG 68 (79)
T ss_pred CCC-cEEEEEEEEEcCCC
Confidence 344 59999999999887
No 57
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=32.16 E-value=83 Score=16.50 Aligned_cols=29 Identities=10% Similarity=-0.005 Sum_probs=21.9
Q ss_pred CeEEEcCCCCCCeEEEEEEEecCCCCCCC
Q psy5696 86 LSASLQGLGKFTNYSIQVMAFTQAGDGTL 114 (125)
Q Consensus 86 ~~~~i~~L~p~~~y~v~v~a~~~~g~g~~ 114 (125)
..+.|.++.+.-.=...+.|.|..|....
T Consensus 64 ~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~ 92 (98)
T cd05870 64 SSLHIKDVKLSDSGRYDCEAASRIGGHQK 92 (98)
T ss_pred eEEEEeeCCcCCCEEEEEEEeccCCccee
Confidence 46778888877666778889998886543
No 58
>PF05345 He_PIG: Putative Ig domain; InterPro: IPR008009 This alignment represents the conserved core region of a ~90 residue repeat found in several haemagglutinins and other cell surface proteins. Sequence similarities to Hyalin (IPR003410 from INTERPRO) and the PKD domain (IPR000601 from INTERPRO) suggest an Ig-like fold so this family may be similar in function to the (IPR003791 from INTERPRO) and (IPR003790 from INTERPRO) protein families.
Probab=31.09 E-value=64 Score=14.89 Aligned_cols=11 Identities=27% Similarity=0.389 Sum_probs=5.9
Q ss_pred eEEEEEEEecC
Q psy5696 98 NYSIQVMAFTQ 108 (125)
Q Consensus 98 ~y~v~v~a~~~ 108 (125)
.|.|.|.+.+.
T Consensus 37 ~y~~~vtatd~ 47 (49)
T PF05345_consen 37 TYTFTVTATDG 47 (49)
T ss_pred EEEEEEEEEcC
Confidence 55555555544
No 59
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=30.81 E-value=76 Score=15.63 Aligned_cols=27 Identities=7% Similarity=-0.236 Sum_probs=21.2
Q ss_pred CeEEEcCCCCCCeEEEEEEEecCCCCC
Q psy5696 86 LSASLQGLGKFTNYSIQVMAFTQAGDG 112 (125)
Q Consensus 86 ~~~~i~~L~p~~~y~v~v~a~~~~g~g 112 (125)
..+.|.++++.-.-...+.|.|..|..
T Consensus 47 ~~L~I~~~~~~D~G~Y~C~a~N~~G~~ 73 (81)
T cd05765 47 GQLVIYNAQPQDAGLYTCTARNSGGLL 73 (81)
T ss_pred cEEEEccCCcccCEEEEEEEecCCceE
Confidence 467788888877777788999988853
No 60
>cd00146 PKD polycystic kidney disease I (PKD) domain; similar to other cell-surface modules, with an IG-like fold; domain probably functions as a ligand binding site in protein-protein or protein-carbohydrate interactions; a single instance of the repeat is presented here. The domain is also found in microbial collagenases and chitinases.
Probab=30.50 E-value=62 Score=16.20 Aligned_cols=19 Identities=11% Similarity=0.279 Sum_probs=14.9
Q ss_pred CCCCCeEEEEEEEecCCCCC
Q psy5696 93 LGKFTNYSIQVMAFTQAGDG 112 (125)
Q Consensus 93 L~p~~~y~v~v~a~~~~g~g 112 (125)
.++ ..|.+++.+.+..|..
T Consensus 54 ~~~-G~y~v~l~v~d~~g~~ 72 (81)
T cd00146 54 TKP-GTYTVTLTVTNAVGSS 72 (81)
T ss_pred CCC-cEEEEEEEEEeCCCCE
Confidence 444 6999999999987654
No 61
>PF12929 Mid1: Stretch-activated Ca2+-permeable channel component; InterPro: IPR024338 Mid1 is a yeast plasma membrane protein required for Ca2+ influx induced by the mating pheromone alpha-factor during the mating process [, , ]. The protein is composed of 548-amino-acid residues, contains four hydrophobic regions (H1, H2, H3 and H4) and two cysteine-rich regions (C1 and C2) at the C terminus. H1 appears to be a signal sequence necessary for the alpha-factor-induced delivery to the plasma membrane. The region from H1 to H3 is required for the localisation of Mid1 in the plasma and ER membranes. C1 and C2 are thought to be involved in oligomerisation via the formation of disulphide bonds. Trafficking of Mid1-GFP to the plasma membrane is dependent on the N-glycosylation of Mid1 and the transporter protein Sec12. This suggests that the trafficking of Mid1-GFP to the plasma membrane requires a Sec12-dependent pathway from the ER to the Golgi, and that Mid1 is recruited via a Sec6- and Sec7-independent pathway from the Golgi to the plasma membrane.
Probab=30.26 E-value=1.3e+02 Score=21.45 Aligned_cols=40 Identities=23% Similarity=0.218 Sum_probs=27.2
Q ss_pred cCeEEEcCCCCCCeEEEEEEEecC----CCCCCCCccEEeeccC
Q psy5696 85 SLSASLQGLGKFTNYSIQVMAFTQ----AGDGTLSDVIFCRTLE 124 (125)
Q Consensus 85 ~~~~~i~~L~p~~~y~v~v~a~~~----~g~g~~s~~~~~~t~~ 124 (125)
..++.|.+|.+.+.|...+.-... .|.|....++.|+|..
T Consensus 186 k~QFyv~GLn~ST~Y~a~L~~~~~~~~~~~GG~vf~~~~F~Tk~ 229 (427)
T PF12929_consen 186 KQQFYVTGLNSSTNYTAYLAKKSGNGVVGGGGTVFQPTNFTTKS 229 (427)
T ss_pred eeeEEecCCCCCCeEEEEEEEccCCCccCCCCeEEcCEEEEeCC
Confidence 567889999999999987761111 2234445667787764
No 62
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=29.49 E-value=89 Score=16.05 Aligned_cols=31 Identities=13% Similarity=-0.099 Sum_probs=23.6
Q ss_pred CeEEEcCCCCCCeEEEEEEEecCCCCCCCCc
Q psy5696 86 LSASLQGLGKFTNYSIQVMAFTQAGDGTLSD 116 (125)
Q Consensus 86 ~~~~i~~L~p~~~y~v~v~a~~~~g~g~~s~ 116 (125)
..+.|.++...-.-..++.|.|..|....+.
T Consensus 55 ~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a 85 (90)
T cd05858 55 EVLYLRNVTFEDAGEYTCLAGNSIGISHHSA 85 (90)
T ss_pred eEEEEccCCHHHCEEEEEEEEeCCCcccceE
Confidence 4678899988777778888999888654443
No 63
>PF14686 fn3_3: Polysaccharide lyase family 4, domain II; PDB: 1NKG_A 2XHN_B 3NJX_A 3NJV_A.
Probab=29.11 E-value=74 Score=17.13 Aligned_cols=21 Identities=14% Similarity=0.127 Sum_probs=13.3
Q ss_pred CcCeEEEcCCCCCCeEEEEEEE
Q psy5696 84 SSLSASLQGLGKFTNYSIQVMA 105 (125)
Q Consensus 84 ~~~~~~i~~L~p~~~y~v~v~a 105 (125)
..-.|.|++++|+ .|.+.+-+
T Consensus 48 ~~G~Fti~~V~pG-tY~L~ay~ 68 (95)
T PF14686_consen 48 SDGNFTIPNVRPG-TYRLYAYA 68 (95)
T ss_dssp TTSEEE---B-SE-EEEEEEEE
T ss_pred CCCcEEeCCeeCc-EeEEEEEE
Confidence 4568899999997 59988877
No 64
>cd08544 Reeler Reeler, the N-terminal domain of reelin, F-spondin, and a variety of other proteins. This domain is found at the N-terminus of F-spondin, a protein attached to the extracellular matrix, which plays roles in neuronal development and vascular remodelling. The F-spondin reeler domain has been reported to bind heparin. The reeler domain is also found at the N-terminus of reelin, an extracellular glycoprotein involved in the development of the brain cortex, and in a variety of other eukaryotic proteins with different domain architectures, including the animal ferric-chelate reductase 1 or stromal cell-derived receptor 2, a member of the cytochrome B561 family, which reduces ferric iron before its transport from the endosome to the cytoplasm. Also included is the insect putative defense protein 1, which is expressed upon bacterial infection and appears to contain a single reeler domain.
Probab=28.93 E-value=1.1e+02 Score=17.29 Aligned_cols=18 Identities=22% Similarity=0.571 Sum_probs=13.2
Q ss_pred CCeEEEEEEecCCCCCCCee
Q psy5696 40 STTLKITWETVPNEARNGII 59 (125)
Q Consensus 40 ~~~~~l~W~~p~~~~~~~~i 59 (125)
...+.+.|.+| ....|.|
T Consensus 95 k~~v~~~W~AP--~~~~g~V 112 (135)
T cd08544 95 KTSVTFTWTAP--SNGSGCV 112 (135)
T ss_pred CceeEEEEECC--CCCCccE
Confidence 56799999998 4445666
No 65
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=28.64 E-value=85 Score=15.50 Aligned_cols=30 Identities=3% Similarity=-0.058 Sum_probs=20.1
Q ss_pred CeEEEcCCCCCCeEEEEEEEecCCCCCCCC
Q psy5696 86 LSASLQGLGKFTNYSIQVMAFTQAGDGTLS 115 (125)
Q Consensus 86 ~~~~i~~L~p~~~y~v~v~a~~~~g~g~~s 115 (125)
..+.|.++.+.-.-...+.|.|..|.....
T Consensus 34 ~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~ 63 (70)
T cd05864 34 VHLTIYEVTEKDAGNYTVVLTNPITKEEQR 63 (70)
T ss_pred CEEEECcCCHHHCEEEEEEEEECCCceeeE
Confidence 356777777765555667888888755433
No 66
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=27.35 E-value=98 Score=15.83 Aligned_cols=35 Identities=9% Similarity=-0.081 Sum_probs=25.4
Q ss_pred CeEEEcCCCCCCeEEEEEEEecCCCCCCCCccEEe
Q psy5696 86 LSASLQGLGKFTNYSIQVMAFTQAGDGTLSDVIFC 120 (125)
Q Consensus 86 ~~~~i~~L~p~~~y~v~v~a~~~~g~g~~s~~~~~ 120 (125)
..+.|.++++.-.-..++.|.|..|....+..+.+
T Consensus 47 ~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~V 81 (85)
T cd05854 47 GDLVIVNAQLSHAGTYTCTAQTVVDSASASATLVV 81 (85)
T ss_pred eEEEEccCChhhCeEEEEEEecCCCCEEEEEEEEE
Confidence 46778888888777888899998886544444444
No 67
>COG3536 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.29 E-value=97 Score=17.40 Aligned_cols=30 Identities=7% Similarity=0.157 Sum_probs=23.3
Q ss_pred ecCCCcCeEEEcCCCCCCeEEEEEEEecCC
Q psy5696 80 TKDTSSLSASLQGLGKFTNYSIQVMAFTQA 109 (125)
Q Consensus 80 ~~~~~~~~~~i~~L~p~~~y~v~v~a~~~~ 109 (125)
+.....+.+.|.+++|-.+|-+++.-..+.
T Consensus 52 v~v~gkr~V~i~~i~p~GnYavri~FdDgH 81 (120)
T COG3536 52 VLVPGKRNVQIRDIEPVGNYAVRILFDDGH 81 (120)
T ss_pred eeeeccccceEEEeEecCceEEEEEecCCc
Confidence 344567788999999999999998766543
No 68
>COG3422 Uncharacterized conserved protein [Function unknown]
Probab=26.60 E-value=71 Score=15.62 Aligned_cols=14 Identities=21% Similarity=0.259 Sum_probs=10.8
Q ss_pred CCCeEEEEEEEecC
Q psy5696 95 KFTNYSIQVMAFTQ 108 (125)
Q Consensus 95 p~~~y~v~v~a~~~ 108 (125)
....|+|+++|.|+
T Consensus 11 k~Ge~rfrlkA~N~ 24 (59)
T COG3422 11 KAGEYRFRLKAANG 24 (59)
T ss_pred CCCcEEEEEEccCc
Confidence 45789999998774
No 69
>PF08329 ChitinaseA_N: Chitinase A, N-terminal domain; InterPro: IPR013540 This domain is found in a number of bacterial chitinases and similar viral proteins. It is organised into a fibronectin III module domain-like fold, comprising only beta strands. Its function is not known, but it may be involved in interaction with the enzyme substrate, chitin [, ]. It is separated by a hinge region from the catalytic domain (IPR001223 from INTERPRO); this hinge region is probably mobile, allowing the N-terminal domain to have different relative positions in solution []. ; GO: 0004568 chitinase activity; PDB: 2WLY_A 1EDQ_A 2WM0_A 1X6N_A 1NH6_A 2WK2_A 1EHN_A 2WLZ_A 1EIB_A 1FFR_A ....
Probab=26.47 E-value=77 Score=18.42 Aligned_cols=26 Identities=27% Similarity=0.185 Sum_probs=16.8
Q ss_pred CCCCeEEEEEEEecCCCCCCCCccEEe
Q psy5696 94 GKFTNYSIQVMAFTQAGDGTLSDVIFC 120 (125)
Q Consensus 94 ~p~~~y~v~v~a~~~~g~g~~s~~~~~ 120 (125)
..+..|.++|+++|..|.+. |.++.+
T Consensus 80 ~~gG~y~~~VeLCN~~GCS~-S~~~~V 105 (133)
T PF08329_consen 80 TKGGRYQMQVELCNADGCST-SAPVEV 105 (133)
T ss_dssp -S-EEEEEEEEEEETTEEEE----EEE
T ss_pred cCCCEEEEEEEEECCCCccc-CCCEEE
Confidence 45689999999999998653 334443
No 70
>PF01186 Lysyl_oxidase: Lysyl oxidase ; InterPro: IPR001695 Lysyl oxidase (1.4.3.13 from EC) (LOX) [] is an extracellular copper-dependent enzyme that catalyses the oxidative deamination of peptidyl lysine residues in precursors of various collagens and elastins, yielding alpha-aminoadipic-delta-semialdehyde. The deaminated lysines are then able to form semialdehyde cross-links, resulting in the formation of insoluble collagen and elastin fibres in the extracellular matrix []. The active site of LOX resides towards the C terminus: this region also binds a single copper atom in an octahedral coordination complex involving at least 3 His residues []. Four histidine residues are clustered in a central region of the enzyme. This region is thought to be involved in cooper-binding and is called the 'copper-talon' [].; GO: 0005507 copper ion binding, 0016641 oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor, 0055114 oxidation-reduction process
Probab=26.17 E-value=85 Score=19.77 Aligned_cols=29 Identities=10% Similarity=0.112 Sum_probs=20.3
Q ss_pred CeEEEcCCCCCCeEEEEEEEecCC--CCCCCC
Q psy5696 86 LSASLQGLGKFTNYSIQVMAFTQA--GDGTLS 115 (125)
Q Consensus 86 ~~~~i~~L~p~~~y~v~v~a~~~~--g~g~~s 115 (125)
-.+.|+++.|+ .|.|+|.+-... .++.+.
T Consensus 150 QWiDITdvp~G-~Y~l~V~vNP~~~v~Esd~~ 180 (205)
T PF01186_consen 150 QWIDITDVPPG-TYILQVTVNPEYRVAESDFD 180 (205)
T ss_pred cceeecCCCCc-cEEEEEecCCcccccccccc
Confidence 46779999985 799998876543 344444
No 71
>KOG4680|consensus
Probab=25.83 E-value=1.5e+02 Score=17.48 Aligned_cols=26 Identities=23% Similarity=0.385 Sum_probs=21.4
Q ss_pred CeEEEcCCCCCCeEEEEEEEecCCCC
Q psy5696 86 LSASLQGLGKFTNYSIQVMAFTQAGD 111 (125)
Q Consensus 86 ~~~~i~~L~p~~~y~v~v~a~~~~g~ 111 (125)
....|++.-|-..|.+.+++.+..|.
T Consensus 108 hsq~LPg~tPPG~Y~lkm~~~d~~~~ 133 (153)
T KOG4680|consen 108 HSQVLPGYTPPGSYVLKMTAYDAKGK 133 (153)
T ss_pred eeEeccCcCCCceEEEEEEeecCCCC
Confidence 45567888888999999999998764
No 72
>KOG3585|consensus
Probab=25.70 E-value=97 Score=21.04 Aligned_cols=23 Identities=26% Similarity=0.316 Sum_probs=18.9
Q ss_pred cCeEEEcCCCCCCeEEEEEEEec
Q psy5696 85 SLSASLQGLGKFTNYSIQVMAFT 107 (125)
Q Consensus 85 ~~~~~i~~L~p~~~y~v~v~a~~ 107 (125)
...+.|.+|+|...|.|.+....
T Consensus 57 ~l~~~VsGLdp~s~Y~i~l~~~~ 79 (328)
T KOG3585|consen 57 ALKFKVSGLDPNSLYSILLELVP 79 (328)
T ss_pred ccceeeccCCcccceEEEEEEEE
Confidence 35788999999999999876554
No 73
>PF13205 Big_5: Bacterial Ig-like domain
Probab=25.60 E-value=78 Score=16.77 Aligned_cols=15 Identities=27% Similarity=0.330 Sum_probs=12.7
Q ss_pred cCCCCCCeEEEEEEE
Q psy5696 91 QGLGKFTNYSIQVMA 105 (125)
Q Consensus 91 ~~L~p~~~y~v~v~a 105 (125)
..|.+++.|.+.|..
T Consensus 70 ~~L~~~t~Y~v~i~~ 84 (107)
T PF13205_consen 70 QPLKPGTTYTVTIDS 84 (107)
T ss_pred CcCCCCCEEEEEECC
Confidence 568999999999954
No 74
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=25.15 E-value=97 Score=15.03 Aligned_cols=28 Identities=11% Similarity=0.036 Sum_probs=20.2
Q ss_pred cCeEEEcCCCCCCeEEEEEEEecCCCCC
Q psy5696 85 SLSASLQGLGKFTNYSIQVMAFTQAGDG 112 (125)
Q Consensus 85 ~~~~~i~~L~p~~~y~v~v~a~~~~g~g 112 (125)
...+.|.++.+.-.=..++.|.|..|..
T Consensus 35 ~~~L~I~~v~~~D~G~Y~C~a~N~~G~~ 62 (71)
T cd05876 35 NKTLQLDNVLESDDGEYVCTAENSEGSA 62 (71)
T ss_pred CCEEEEcccCHHhCEEEEEEEEcCCCeE
Confidence 4567788888765556777889988754
No 75
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=24.69 E-value=1e+02 Score=15.14 Aligned_cols=26 Identities=15% Similarity=0.024 Sum_probs=20.2
Q ss_pred CeEEEcCCCCCCeEEEEEEEecCCCC
Q psy5696 86 LSASLQGLGKFTNYSIQVMAFTQAGD 111 (125)
Q Consensus 86 ~~~~i~~L~p~~~y~v~v~a~~~~g~ 111 (125)
..+.|.++++.-.-..++.|.|..|.
T Consensus 41 ~~L~I~~~~~~D~G~Y~C~a~N~~G~ 66 (76)
T cd05867 41 GALILTDVQPSDTAVYQCEARNRHGN 66 (76)
T ss_pred CEEEECCCChhhCEEEEEEEECCCCe
Confidence 45778888877667788889998774
No 76
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=24.60 E-value=1e+02 Score=15.05 Aligned_cols=27 Identities=7% Similarity=0.027 Sum_probs=19.8
Q ss_pred CeEEEcCCCCCCeEEEEEEEecCCCCC
Q psy5696 86 LSASLQGLGKFTNYSIQVMAFTQAGDG 112 (125)
Q Consensus 86 ~~~~i~~L~p~~~y~v~v~a~~~~g~g 112 (125)
..+.|.++.+.-.=..++.|.|..|..
T Consensus 40 ~~L~I~~v~~~D~G~Y~C~A~N~~G~~ 66 (74)
T cd05745 40 GTLRISRVALHDQGQYECQAVNIVGSQ 66 (74)
T ss_pred CeEEEeeCCHHhCEEEEEEEEeCCCce
Confidence 367788887765566788889988754
No 77
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=24.25 E-value=1e+02 Score=15.05 Aligned_cols=26 Identities=19% Similarity=0.157 Sum_probs=17.9
Q ss_pred CeEEEcCCCCCCeEEEEEEEecCCCC
Q psy5696 86 LSASLQGLGKFTNYSIQVMAFTQAGD 111 (125)
Q Consensus 86 ~~~~i~~L~p~~~y~v~v~a~~~~g~ 111 (125)
..+.|.++.+.-.=...+.|.|..|.
T Consensus 48 ~~L~i~~v~~~D~G~Y~C~a~N~~G~ 73 (82)
T cd05856 48 WTLSLKNLKPEDSGKYTCHVSNRAGE 73 (82)
T ss_pred EEEEEccCChhhCEEEEEEEEcCCcc
Confidence 45667788766555567778887774
No 78
>KOG1378|consensus
Probab=24.16 E-value=1.4e+02 Score=21.43 Aligned_cols=34 Identities=24% Similarity=0.172 Sum_probs=23.9
Q ss_pred cCeEEEcCCCCCCeEEEEEEEecCCCCCCCCccEEeecc
Q psy5696 85 SLSASLQGLGKFTNYSIQVMAFTQAGDGTLSDVIFCRTL 123 (125)
Q Consensus 85 ~~~~~i~~L~p~~~y~v~v~a~~~~g~g~~s~~~~~~t~ 123 (125)
.....+.+|++++.|..+|-.... +|....++|+
T Consensus 108 ih~~~~~~L~~~t~YyY~~Gs~~~-----wS~~f~F~t~ 141 (452)
T KOG1378|consen 108 IHDAVMKNLEPNTRYYYQVGSDLK-----WSEIFSFKTP 141 (452)
T ss_pred EeeeeecCCCCCceEEEEeCCCCC-----cccceEeECC
Confidence 345678999999999998754432 5666666654
No 79
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=23.59 E-value=1.3e+02 Score=16.11 Aligned_cols=28 Identities=11% Similarity=0.009 Sum_probs=19.7
Q ss_pred CeEEEcCCCCCCeEEEEEEEecCCCCCC
Q psy5696 86 LSASLQGLGKFTNYSIQVMAFTQAGDGT 113 (125)
Q Consensus 86 ~~~~i~~L~p~~~y~v~v~a~~~~g~g~ 113 (125)
..+.|..+++.-.-..++.|.|..|...
T Consensus 65 ~~L~i~~v~~~D~G~Ytc~A~N~~G~~~ 92 (101)
T cd04975 65 SELKLVRLKESEAGTYTFLASNSDASKS 92 (101)
T ss_pred EEEEEeecCHhhCeeEEEEEECCCccEE
Confidence 4567777877655666778888888543
No 80
>PF14299 PP2: Phloem protein 2
Probab=23.01 E-value=1.8e+02 Score=17.22 Aligned_cols=34 Identities=9% Similarity=-0.033 Sum_probs=18.9
Q ss_pred eEEEcCCCCCCeEEEEEEEecCCCCCCCCc-cEEe
Q psy5696 87 SASLQGLGKFTNYSIQVMAFTQAGDGTLSD-VIFC 120 (125)
Q Consensus 87 ~~~i~~L~p~~~y~v~v~a~~~~g~g~~s~-~~~~ 120 (125)
.+....|.|++.|.+.+...-......+.. ++.+
T Consensus 50 ~i~~~~Lsp~t~Y~vy~v~kl~~~~~Gw~~~pv~~ 84 (154)
T PF14299_consen 50 KINTRMLSPGTTYAVYFVFKLKDDAYGWDSPPVEF 84 (154)
T ss_pred EEEceEcCCCCEEEEEEEEEecCCCCCCCcCCEEE
Confidence 334455788899987766554433333333 4443
No 81
>cd02856 Glycogen_debranching_enzyme_N_term Glycogen_debranching_enzyme N-terminal domain. Glycogen debranching enzymes have both 4-alpha-glucanotransferase and amylo-1,6-glucosidase activities. As a transferase it transfers a segment of a 1,4-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or another 1,4-alpha-D-glucan. As a glucosidase it catalyzes the endohydrolysis of 1,6-alpha-D-glucoside linkages at points of branching in chains of 1,4-linked alpha-D-glucose residues. The N-terminus of the glycogen debranching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=22.76 E-value=1.4e+02 Score=16.00 Aligned_cols=19 Identities=21% Similarity=0.310 Sum_probs=15.1
Q ss_pred eEEEcCCCCCCeEEEEEEE
Q psy5696 87 SASLQGLGKFTNYSIQVMA 105 (125)
Q Consensus 87 ~~~i~~L~p~~~y~v~v~a 105 (125)
...+.++.++..|.++|.-
T Consensus 48 ~~~v~~~~~g~~Y~y~i~g 66 (103)
T cd02856 48 HGFLPGIKAGQRYGFRVHG 66 (103)
T ss_pred EEEECCCCCCCEEEEEECC
Confidence 5567788888999999865
No 82
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=22.58 E-value=1.1e+02 Score=14.63 Aligned_cols=27 Identities=15% Similarity=-0.048 Sum_probs=18.9
Q ss_pred CeEEEcCCCCCCeEEEEEEEecCCCCC
Q psy5696 86 LSASLQGLGKFTNYSIQVMAFTQAGDG 112 (125)
Q Consensus 86 ~~~~i~~L~p~~~y~v~v~a~~~~g~g 112 (125)
..+.|.++.+.-.=...+.|.|..|..
T Consensus 35 ~~L~I~~v~~~D~G~Y~C~a~N~~G~~ 61 (69)
T cd05725 35 KSLKIRNVTAGDEGSYTCEAENMVGKI 61 (69)
T ss_pred CEEEECcCChhHCEEEEEEEEcCCCcE
Confidence 357788887665556678888887753
No 83
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=22.45 E-value=1.2e+02 Score=15.02 Aligned_cols=26 Identities=23% Similarity=0.033 Sum_probs=19.8
Q ss_pred eEEEcCCCCCCeEEEEEEEecCCCCC
Q psy5696 87 SASLQGLGKFTNYSIQVMAFTQAGDG 112 (125)
Q Consensus 87 ~~~i~~L~p~~~y~v~v~a~~~~g~g 112 (125)
.+.|.++++.-.-..++.|.|..|..
T Consensus 42 ~L~I~~~~~~D~G~Y~C~a~N~~G~~ 67 (75)
T cd05744 42 CLLIQNANKEDAGWYTVSAVNEAGVV 67 (75)
T ss_pred EEEECCCCcccCEEEEEEEEcCCCcE
Confidence 47788888776666788999988854
No 84
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=22.18 E-value=1.4e+02 Score=15.62 Aligned_cols=28 Identities=14% Similarity=0.012 Sum_probs=20.1
Q ss_pred CeEEEcCCCCCCeEEEEEEEecCCCCCC
Q psy5696 86 LSASLQGLGKFTNYSIQVMAFTQAGDGT 113 (125)
Q Consensus 86 ~~~~i~~L~p~~~y~v~v~a~~~~g~g~ 113 (125)
..+.|.++...-.-...+.|.|..|...
T Consensus 63 ~~L~I~~v~~~D~G~Y~C~A~N~~G~~~ 90 (97)
T cd05869 63 SSLTLKYIQYTDAGEYLCTASNTIGQDS 90 (97)
T ss_pred EEEEEecCccCcCEEEEEEEecCCCCee
Confidence 3567777776656677788899888653
No 85
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=22.00 E-value=1.3e+02 Score=15.42 Aligned_cols=27 Identities=15% Similarity=0.049 Sum_probs=20.2
Q ss_pred CeEEEcCCCCCCeEEEEEEEecCCCCC
Q psy5696 86 LSASLQGLGKFTNYSIQVMAFTQAGDG 112 (125)
Q Consensus 86 ~~~~i~~L~p~~~y~v~v~a~~~~g~g 112 (125)
..+.|.++...-.-...+.|.|..|..
T Consensus 62 ~~L~I~~v~~~D~G~Y~C~a~N~~G~~ 88 (96)
T cd05732 62 SSLTLKDVQLTDAGRYDCEASNRIGGD 88 (96)
T ss_pred EEEEECcCCcCcCEEeEEEEEeCCCCc
Confidence 467788887765666788888988865
No 86
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=21.82 E-value=1.1e+02 Score=14.63 Aligned_cols=28 Identities=11% Similarity=0.076 Sum_probs=20.3
Q ss_pred CeEEEcCCCCCCeEEEEEEEecCCCCCC
Q psy5696 86 LSASLQGLGKFTNYSIQVMAFTQAGDGT 113 (125)
Q Consensus 86 ~~~~i~~L~p~~~y~v~v~a~~~~g~g~ 113 (125)
..+.|.++.+.-.-...+.|.|..|...
T Consensus 36 ~~L~I~~~~~~D~G~Y~C~a~N~~G~~~ 63 (69)
T cd05746 36 GYLAIRDVGVADQGRYECVARNTIGYAS 63 (69)
T ss_pred CEEEECcCChhhCEEEEEEEECCCCcEE
Confidence 4577888877666667788899888643
No 87
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=21.52 E-value=1.2e+02 Score=14.68 Aligned_cols=27 Identities=15% Similarity=-0.119 Sum_probs=19.2
Q ss_pred CeEEEcCCCCCCeEEEEEEEecCCCCC
Q psy5696 86 LSASLQGLGKFTNYSIQVMAFTQAGDG 112 (125)
Q Consensus 86 ~~~~i~~L~p~~~y~v~v~a~~~~g~g 112 (125)
..+.|.++...-.-..++.|.|..|..
T Consensus 41 ~~L~i~~v~~~D~G~Y~C~A~N~~G~~ 67 (76)
T cd04978 41 GTLILSNVQPNDTAVYQCNASNVHGYL 67 (76)
T ss_pred CEEEECCCChhhCEEEEEEEEccCCeE
Confidence 466777787665556778888887754
No 88
>PF14250 AbrB-like: AbrB-like transcriptional regulator
Probab=21.31 E-value=1.2e+02 Score=15.43 Aligned_cols=41 Identities=20% Similarity=0.242 Sum_probs=25.4
Q ss_pred CCCCeeeEEEEEEEECCCCCCcceeEecCCCcCeEEEcCCCCCCeEEEEE
Q psy5696 54 ARNGIIQGYKVVYYPAEDWYESLESDTKDTSSLSASLQGLGKFTNYSIQV 103 (125)
Q Consensus 54 ~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~y~v~v 103 (125)
..+|.-..|++....++.- . .....-.-.+|+|+..|.+++
T Consensus 23 ~~~GR~~syr~~Vq~NGnL-------L--IG~AYT~~m~L~PGdEFeI~L 63 (71)
T PF14250_consen 23 GRRGRKASYRVSVQGNGNL-------L--IGSAYTKQMGLKPGDEFEIKL 63 (71)
T ss_pred CCCCcCceEEEEEecCCCE-------E--EcHHHHHHhCCCCCCEEEEEe
Confidence 4456667888887766542 1 112222346889998888876
No 89
>PF02014 Reeler: Reeler domain Schematic picture including Reeler domain; InterPro: IPR002861 Extracellular matrix (ECM) proteins play an important role in early cortical development, specifically in the formation of neural connections and in controlling the cyto-architecture of the central nervous system. The product of the reeler gene in mouse is reelin,a large extracellular protein secreted by pioneer neurons that coordinates cell positioning during neurodevelopment []. F-spondin and mindin are a family of matrix-attached adhesion molecules that share structural similarities and overlapping domains of expression. Both F-spondin and mindin promote adhesion and outgrowth of hippocampal embryonic neurons and bind to a putative receptor(s) expressed on both hippocampal and sensory neurons []. This domain of unknown function is found at the N terminus of reelin and F-spondin.; PDB: 2ZOT_B 2ZOU_B 3COO_A.
Probab=21.28 E-value=1.7e+02 Score=16.51 Aligned_cols=18 Identities=22% Similarity=0.527 Sum_probs=10.4
Q ss_pred CCeEEEEEEecCCCCCCCee
Q psy5696 40 STTLKITWETVPNEARNGII 59 (125)
Q Consensus 40 ~~~~~l~W~~p~~~~~~~~i 59 (125)
+..+.+.|..| ....|.|
T Consensus 99 K~~v~~~W~AP--~~~~g~V 116 (132)
T PF02014_consen 99 KTSVTFTWTAP--ADFSGCV 116 (132)
T ss_dssp BSEEEEEEE----STTS-EE
T ss_pred ccEEEEEEcCC--CCCCceE
Confidence 45799999998 4444655
No 90
>PHA02579 7 baseplate wedge subunit; Provisional
Probab=21.11 E-value=4.2e+02 Score=20.91 Aligned_cols=69 Identities=14% Similarity=0.086 Sum_probs=40.5
Q ss_pred ceEEEeecCCeEEEEEEecCCCCCCCeeeEEEEEEEECCCCCC-------cceeE-ecCCCcCeEEEcCCCCCCeEEEEE
Q psy5696 32 NIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYE-------SLESD-TKDTSSLSASLQGLGKFTNYSIQV 103 (125)
Q Consensus 32 ~~~~~~~~~~~~~l~W~~p~~~~~~~~i~~y~v~~~~~~~~~~-------~~~~~-~~~~~~~~~~i~~L~p~~~y~v~v 103 (125)
.+.+...+.+.+.|.|.... .=..|.|++........ ..... -.......+. ..++|.+.|.+||
T Consensus 10 slrI~kLsaN~v~l~WddVG------~NFyY~Ve~a~t~~~~g~~ip~~~~~w~nlg~T~~~~wFe-d~~~p~t~Yk~Rv 82 (1030)
T PHA02579 10 SLRIDKLSANQVYLTWDDVG------ANFYYFVELAETRDADGELIPDDELRWINLGYTANNEWFE-DKLQPNTYYKFRV 82 (1030)
T ss_pred EEEhhhhccceEEEEeeccC------CceEEEEEEEeeccCCCccCCCccccceecCcccchhhhh-hccCCcceEEEEE
Confidence 35555567788999998863 22478888774322100 01111 1222333333 3489999999999
Q ss_pred EEec
Q psy5696 104 MAFT 107 (125)
Q Consensus 104 ~a~~ 107 (125)
+..-
T Consensus 83 ~~~~ 86 (1030)
T PHA02579 83 AVAA 86 (1030)
T ss_pred Eeec
Confidence 8764
No 91
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=20.88 E-value=1.2e+02 Score=14.40 Aligned_cols=27 Identities=7% Similarity=0.091 Sum_probs=18.5
Q ss_pred CeEEEcCCCCCCeEEEEEEEecCCCCC
Q psy5696 86 LSASLQGLGKFTNYSIQVMAFTQAGDG 112 (125)
Q Consensus 86 ~~~~i~~L~p~~~y~v~v~a~~~~g~g 112 (125)
..+.|.++...-.-..++.|.|..|..
T Consensus 36 ~~L~i~~v~~~D~G~Y~C~a~N~~G~~ 62 (71)
T cd05731 36 KTLKIDNVSEEDDGEYRCTASNSLGSA 62 (71)
T ss_pred CEEEECCCCHHHCEEEEEEEEeCCceE
Confidence 356777777655556677888888754
No 92
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=20.24 E-value=1.4e+02 Score=15.10 Aligned_cols=30 Identities=10% Similarity=-0.035 Sum_probs=21.6
Q ss_pred cCeEEEcCCCCCCeEEEEEEEecCCCCCCC
Q psy5696 85 SLSASLQGLGKFTNYSIQVMAFTQAGDGTL 114 (125)
Q Consensus 85 ~~~~~i~~L~p~~~y~v~v~a~~~~g~g~~ 114 (125)
...+.|.++...-.-...+.|.|..|....
T Consensus 52 ~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~ 81 (88)
T cd04968 52 GAVLKIPNIQFEDEGTYECEAENIKGKDTH 81 (88)
T ss_pred CCEEEECCCCcccCEEEEEEEEECCCcEEE
Confidence 356778888876666677888998886543
Done!