RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5696
(125 letters)
>gnl|CDD|238020 cd00063, FN3, Fibronectin type 3 domain; One of three types of
internal repeats found in the plasma protein
fibronectin. Its tenth fibronectin type III repeat
contains an RGD cell recognition sequence in a flexible
loop between 2 strands. Approximately 2% of all animal
proteins contain the FN3 repeat; including extracellular
and intracellular proteins, membrane spanning cytokine
receptors, growth hormone receptors, tyrosine
phosphatase receptors, and adhesion molecules. FN3-like
domains are also found in bacterial glycosyl hydrolases.
Length = 93
Score = 64.8 bits (158), Expect = 6e-15
Identities = 29/94 (30%), Positives = 42/94 (44%), Gaps = 3/94 (3%)
Query: 29 PPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYESLESDTKDTSSLSA 88
PP N+ + VTST++ ++W P E G I GY V Y + E + S S
Sbjct: 3 PPTNLRVTDVTSTSVTLSWT--PPEDDGGPITGYVVEYREKGSG-DWKEVEVTPGSETSY 59
Query: 89 SLQGLGKFTNYSIQVMAFTQAGDGTLSDVIFCRT 122
+L GL T Y +V A G+ S+ + T
Sbjct: 60 TLTGLKPGTEYEFRVRAVNGGGESPPSESVTVTT 93
>gnl|CDD|214495 smart00060, FN3, Fibronectin type 3 domain. One of three types of
internal repeat within the plasma protein, fibronectin.
The tenth fibronectin type III repeat contains a RGD
cell recognition sequence in a flexible loop between 2
strands. Type III modules are present in both
extracellular and intracellular proteins.
Length = 83
Score = 58.8 bits (142), Expect = 1e-12
Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
Query: 29 PPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYESLESDTKDTSSLSA 88
PP N+ + VTST++ ++WE P++ G I GY+V Y ++ + T S
Sbjct: 3 PPSNLRVTDVTSTSVTLSWEPPPDDGITGYIVGYRVEYREEGSEWKEVNVTPSST---SY 59
Query: 89 SLQGLGKFTNYSIQVMAFTQAGDG 112
+L GL T Y +V A AG+G
Sbjct: 60 TLTGLKPGTEYEFRVRAVNGAGEG 83
>gnl|CDD|200951 pfam00041, fn3, Fibronectin type III domain.
Length = 84
Score = 50.5 bits (121), Expect = 1e-09
Identities = 32/87 (36%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
Query: 29 PPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYESLESDTKDTSSLSA 88
P N+ + VTST+L ++W P NG I GY+V Y P E E T++ S
Sbjct: 2 APTNLTVTDVTSTSLTLSWSPPPG---NGPITGYEVEYRPVNGGEEWKEITVPGTTT-SY 57
Query: 89 SLQGLGKFTNYSIQVMAFTQAGDGTLS 115
+L GL T Y ++V A AG+G S
Sbjct: 58 TLTGLKPGTEYEVRVQAVNGAGEGPPS 84
>gnl|CDD|234210 TIGR03439, methyl_EasF, probable methyltransferase domain, EasF
family. This model represents an uncharacterized domain
of about 300 amino acids with homology to
S-adenosylmethionine-dependent methyltransferases.
Proteins with this domain are exclusively fungal. A few,
such as EasF from Neotyphodium lolii, are associated
with the biosynthesis of ergot alkaloids, a class of
fungal secondary metabolites. EasF may, in fact, be the
AdoMet:dimethylallyltryptophan N-methyltransferase, the
enzyme that follows tryptophan dimethylallyltransferase
(DMATS) in ergot alkaloid biosynthesis. Several other
members of this family, including mug158 (meiotically
up-regulated gene 158 protein) from Schizosaccharomyces
pombe, contain an additional uncharacterized domain
DUF323 (pfam03781).
Length = 319
Score = 30.7 bits (70), Expect = 0.17
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 2 LNWLARPEPQSTIVTILTMYNISMPSLPPENIA--CSSVTSTTLK 44
L WL RPE +S TIL + + S+ + A + +T L
Sbjct: 145 LAWLKRPENRSRPTTILWLGS-SIGNFSRPEAAAFLAGFLATALS 188
>gnl|CDD|225892 COG3356, COG3356, Predicted membrane protein [Function unknown].
Length = 578
Score = 26.3 bits (58), Expect = 4.8
Identities = 12/57 (21%), Positives = 21/57 (36%)
Query: 12 STIVTILTMYNISMPSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYP 68
ST + +L + P +A + V S I + N + ++ VY P
Sbjct: 90 STFLVLLLVLLAIRPVDVSLILAVALVLSFRFLIVLVSYKNSVPSSVLPSMNYVYSP 146
>gnl|CDD|223535 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Posttranslational
modification, protein turnover, chaperones].
Length = 524
Score = 26.0 bits (58), Expect = 6.7
Identities = 9/26 (34%), Positives = 13/26 (50%), Gaps = 3/26 (11%)
Query: 101 IQVMAFTQ---AGDGTLSDVIFCRTL 123
+ +A Q AGDGT + V+ L
Sbjct: 70 LVEVAKKQDDEAGDGTTTAVVLAGAL 95
>gnl|CDD|216086 pfam00728, Glyco_hydro_20, Glycosyl hydrolase family 20, catalytic
domain. This domain has a TIM barrel fold.
Length = 335
Score = 25.8 bits (57), Expect = 7.0
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 46 TWETVPNEARNGIIQGYKVVYYPAEDWY 73
+W +AR QGYKV+ P + Y
Sbjct: 227 SWRNGGAQARQAANQGYKVILSPGDFLY 254
>gnl|CDD|227786 COG5499, COG5499, Predicted transcription regulator containing
HTH domain [Transcription].
Length = 120
Score = 25.2 bits (55), Expect = 8.1
Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 6 ARPEPQSTIVTILTMYNISMPSLPPENIACSSVTSTTL 43
A P+P I T++ Y +++ L E I S S L
Sbjct: 57 AAPDPVEVIRTLMDQYGLTLADLANE-IGSKSRVSNIL 93
>gnl|CDD|215730 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family. This family
includes members from the HSP60 chaperone family and the
TCP-1 (T-complex protein) family.
Length = 481
Score = 25.7 bits (57), Expect = 9.8
Identities = 8/26 (30%), Positives = 12/26 (46%), Gaps = 3/26 (11%)
Query: 101 IQVMAFTQ---AGDGTLSDVIFCRTL 123
+ A +Q GDGT + V+ L
Sbjct: 48 LVEAAKSQDEEVGDGTTTAVVLAGEL 73
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.314 0.129 0.380
Gapped
Lambda K H
0.267 0.0591 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,984,077
Number of extensions: 469847
Number of successful extensions: 300
Number of sequences better than 10.0: 1
Number of HSP's gapped: 295
Number of HSP's successfully gapped: 11
Length of query: 125
Length of database: 10,937,602
Length adjustment: 85
Effective length of query: 40
Effective length of database: 7,167,512
Effective search space: 286700480
Effective search space used: 286700480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (24.5 bits)