RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5696
(125 letters)
>2ed9_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 124
Score = 120 bits (303), Expect = 9e-37
Identities = 35/116 (30%), Positives = 58/116 (50%), Gaps = 5/116 (4%)
Query: 10 PQSTIVTILTMYNISMPSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPA 69
+ +T++T+ +PS PP+N++ V S ++K++W P+ +NG I GYK+ +
Sbjct: 14 VSTDDITVVTLS--DVPSAPPQNVSLEVVNSRSIKVSWLPPPSGTQNGFITGYKIRHRKT 71
Query: 70 EDWYESLESDTKDTSSLSASLQGLGKFTNYSIQVMAFTQAGDGTLSDVIFCRTLED 125
E T + ++L GL K + YS QV A T G G S+ T E+
Sbjct: 72 TRRGEME---TLEPNNLWYLFTGLEKGSQYSFQVSAMTVNGTGPPSNWYTAETPEN 124
Score = 35.0 bits (81), Expect = 0.001
Identities = 7/25 (28%), Positives = 10/25 (40%)
Query: 101 IQVMAFTQAGDGTLSDVIFCRTLED 125
+ + G G +D I TL D
Sbjct: 2 SSGSSGNRYGPGVSTDDITVVTLSD 26
>2edx_A Protein tyrosine phosphatase, receptor type, F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 134
Score = 116 bits (292), Expect = 7e-35
Identities = 39/117 (33%), Positives = 54/117 (46%), Gaps = 3/117 (2%)
Query: 10 PQSTIVTILTMYNISMPSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPA 69
S + T S PS PP+ + C S+ STT++++W P ++RNG+I Y V Y
Sbjct: 4 GSSGTIEARTA--QSTPSAPPQKVMCVSMGSTTVRVSWVPPPADSRNGVITQYSVAYEAV 61
Query: 70 ED-WYESLESDTKDTSSLSASLQGLGKFTNYSIQVMAFTQAGDGTLSDVIFCRTLED 125
+ D S L GL K+T Y + V A T G G S + RT ED
Sbjct: 62 DGEDRGRHVVDGISREHSSWDLVGLEKWTEYRVWVRAHTDVGPGPESSPVLVRTDED 118
>1x5h_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 132
Score = 115 bits (290), Expect = 1e-34
Identities = 32/116 (27%), Positives = 52/116 (44%), Gaps = 3/116 (2%)
Query: 10 PQSTIVTILTMYNISMPSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPA 69
S V + T+ +PS P+N++ S ++ I W+ +NG I GYK+ Y A
Sbjct: 4 GSSGDVAVRTL--SDVPSAAPQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYRKA 61
Query: 70 EDWYESLESDTKDTSSLSASLQGLGKFTNYSIQVMAFTQAGDGTLSDVIFCRTLED 125
+ + LS ++GL + T Y+ +V A T G G +D + T E
Sbjct: 62 SRK-SDVTETLVSGTQLSQLIEGLDRGTEYNFRVAALTINGTGPATDWLSAETFES 116
>2ee2_A Contactin-1; neural cell surface protein F3, glycoprotein GP135,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 119
Score = 109 bits (275), Expect = 2e-32
Identities = 31/116 (26%), Positives = 50/116 (43%), Gaps = 6/116 (5%)
Query: 10 PQSTIVTILTMYNISMPSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPA 69
S + I + PS P + ++S+ + + WE V I++ Y++ Y+ A
Sbjct: 4 GSSGVAVINSAQ--DAPSEAPTEVGVKVLSSSEISVHWEHVLE----KIVESYQIRYWAA 57
Query: 70 EDWYESLESDTKDTSSLSASLQGLGKFTNYSIQVMAFTQAGDGTLSDVIFCRTLED 125
D E+ + SA L+ L T Y I+V A AG G SD+I T +
Sbjct: 58 HDKEEAANRVQVTSQEYSARLENLLPDTQYFIEVGACNSAGCGPPSDMIEAFTKKA 113
>2dlh_A Receptor-type tyrosine-protein phosphatase delta; protein-tyrosine
phosphatase delta, R-PTP-delta, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 121
Score = 109 bits (273), Expect = 4e-32
Identities = 34/116 (29%), Positives = 50/116 (43%), Gaps = 4/116 (3%)
Query: 10 PQSTIVTILTMYNISMPSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPA 69
S V T + PS P ++ ++STT+ + W+ E NG IQGY+V Y
Sbjct: 4 GSSGPVLTQT--SEQAPSSAPRDVQARMLSSTTILVQWK--EPEEPNGQIQGYRVYYTMD 59
Query: 70 EDWYESLESDTKDTSSLSASLQGLGKFTNYSIQVMAFTQAGDGTLSDVIFCRTLED 125
+ + S ++ L YS++V+AFT GDG LS I T
Sbjct: 60 PTQHVNNWMKHNVADSQITTIGNLVPQKTYSVKVLAFTSIGDGPLSSDIQVITQTG 115
>1va9_A DOWN syndrome cell adhesion molecule like- protein 1B; FNIII
domain, dscaml1 protein, structural genomics; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 122
Score = 108 bits (271), Expect = 7e-32
Identities = 37/117 (31%), Positives = 55/117 (47%), Gaps = 5/117 (4%)
Query: 12 STIVTILTMYNISMPSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYY---P 68
S I T + P PP ++ VTS ++++TW+ E +NG+I+GY++ Y P
Sbjct: 3 SGSSGIST--EEAAPDGPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSP 60
Query: 69 AEDWYESLESDTKDTSSLSASLQGLGKFTNYSIQVMAFTQAGDGTLSDVIFCRTLED 125
+ S+ S +L L KF Y + V AF +AG G S I TLE
Sbjct: 61 GSNGQYSIVEMKATGDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPSSSEINATTLES 117
>2edy_A Receptor-type tyrosine-protein phosphatase F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 103
Score = 107 bits (269), Expect = 9e-32
Identities = 33/100 (33%), Positives = 48/100 (48%), Gaps = 4/100 (4%)
Query: 24 SMPSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYESLESDTKDT 83
S PS P+N+ + +T++T ++ W+ RNG I Y VV+ E T
Sbjct: 6 SGPSGFPQNLHVTGLTTSTTELAWDPPVLAERNGRIISYTVVFRDINSQQEL----QNIT 61
Query: 84 SSLSASLQGLGKFTNYSIQVMAFTQAGDGTLSDVIFCRTL 123
+ +L GL T Y I+V A+T G G LS I RT+
Sbjct: 62 TDTRFTLTGLKPDTTYDIKVRAWTSKGSGPLSPSIQSRTM 101
>3n1f_C Cell adhesion molecule-related/DOWN-regulated BY; binding sites,
calcium, cell adhesion molecules, cell cycle cell LINE,
conserved sequence; 1.60A {Homo sapiens} PDB: 3d1m_C
3n1q_C 3n1m_C 3n1g_C 3n1p_C
Length = 102
Score = 107 bits (268), Expect = 1e-31
Identities = 26/100 (26%), Positives = 46/100 (46%), Gaps = 1/100 (1%)
Query: 24 SMPSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYES-LESDTKD 82
S P P +V+ T + + W +P+ N IQG+ + Y P + +S + D +
Sbjct: 2 STPITGPHIAYTEAVSDTQIMLKWTYIPSSNNNTPIQGFYIYYRPTDSDNDSDYKRDVVE 61
Query: 83 TSSLSASLQGLGKFTNYSIQVMAFTQAGDGTLSDVIFCRT 122
S + L T+Y I++ F + G+ S+V+ C T
Sbjct: 62 GSKQWHMIGHLQPETSYDIKMQCFNEGGESEFSNVMICET 101
>1uen_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold,
fibronectin type III, NG-CAM related cell adhesion
molecule, structural genomics; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 125
Score = 107 bits (269), Expect = 1e-31
Identities = 28/120 (23%), Positives = 52/120 (43%), Gaps = 8/120 (6%)
Query: 12 STIVTILTMYNISMPSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAED 71
S+ + + +P + P N+ + V ST ++ W+ VP ++ G +QGY++ Y+ +
Sbjct: 2 SSGSSGHSGE--DLPMVAPGNVRVNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQS 59
Query: 72 W------YESLESDTKDTSSLSASLQGLGKFTNYSIQVMAFTQAGDGTLSDVIFCRTLED 125
+ + T S L GL F++Y++ V G+G S T E
Sbjct: 60 SSKRNRRHIEKKILTFQGSKTHGMLPGLEPFSHYTLNVRVVNGKGEGPASPDRVFNTPEG 119
>2dbj_A Proto-oncogene tyrosine-protein kinase MER precursor; C-MER,
receptor tyrosine kinase mertk, FN3 domain, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 124
Score = 105 bits (263), Expect = 1e-30
Identities = 20/117 (17%), Positives = 42/117 (35%), Gaps = 3/117 (2%)
Query: 10 PQSTIVTILTMYNISMPSLPPENI-ACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYP 68
S + T PS+ P N+ + +S + I W P + ++G + GY++ +
Sbjct: 4 GSSGWILAST--TEGAPSVAPLNVTVFLNESSDNVDIRWMKPPTKQQDGELVGYRISHVW 61
Query: 69 AEDWYESLESDTKDTSSLSASLQGLGKFTNYSIQVMAFTQAGDGTLSDVIFCRTLED 125
+ + A + ++++ A T+ G G SD +
Sbjct: 62 QSAGISKELLEEVGQNGSRARISVQVHNATCTVRIAAVTRGGVGPFSDPVKIFIPAH 118
>2ed8_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 106
Score = 104 bits (261), Expect = 2e-30
Identities = 35/100 (35%), Positives = 50/100 (50%), Gaps = 7/100 (7%)
Query: 26 PSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYESLESDTKDTSS 85
P P EN+ S + T++ ITWE P NG +QGY++ E +
Sbjct: 8 PG-PVENLQAVSTSPTSILITWE--PPAYANGPVQGYRLFCTEVSTGKEQ----NIEVDG 60
Query: 86 LSASLQGLGKFTNYSIQVMAFTQAGDGTLSDVIFCRTLED 125
LS L+GL KFT YS++ +A+ + G G +D I TL D
Sbjct: 61 LSYKLEGLKKFTEYSLRFLAYNRYGPGVSTDDITVVTLSD 100
>1x5g_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 116
Score = 101 bits (254), Expect = 3e-29
Identities = 35/116 (30%), Positives = 53/116 (45%), Gaps = 9/116 (7%)
Query: 10 PQSTIVTILTMYNISMPSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPA 69
S V + P P N+ + + T++ +TWE + NG IQ YK+ Y
Sbjct: 4 GSSGRVETQPEVQL--PG-PAPNLRAYAASPTSITVTWE--TPVSGNGEIQNYKLYYMEK 58
Query: 70 EDWYESLESDTKDTSSLSASLQGLGKFTNYSIQVMAFTQAGDGTLSDVIFCRTLED 125
E D SS S ++ GL K+T YS +V+A+ + G G + + RTL D
Sbjct: 59 GTDKEQ----DVDVSSHSYTINGLKKYTEYSFRVVAYNKHGPGVSTPDVAVRTLSD 110
>1x4y_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes
(CDON)binding...; fibronectin type III, FN3; NMR {Mus
musculus} SCOP: b.1.2.1
Length = 114
Score = 99.5 bits (248), Expect = 2e-28
Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 1/102 (0%)
Query: 24 SMPSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYESL-ESDTKD 82
S P P +V TT+ + W +P N I G+ + Y P + +S + D +
Sbjct: 6 SGPVAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKDMVE 65
Query: 83 TSSLSASLQGLGKFTNYSIQVMAFTQAGDGTLSDVIFCRTLE 124
S+ L T+Y I++ F + G+ S+V+ C T
Sbjct: 66 GDRYWHSISHLQPETSYDIKMQCFNEGGESEFSNVMICETKA 107
>3f7q_A Integrin beta-4, GP150; hemidesmosome, cell adhesion, carcinoma,
epidermolysis bullosa, alternative splicing, disease
mutation, glycoprotein; HET: 1PE PG4; 1.75A {Homo
sapiens} PDB: 3f7r_A 3f7p_C 1qg3_A
Length = 234
Score = 98.7 bits (246), Expect = 5e-27
Identities = 25/101 (24%), Positives = 43/101 (42%), Gaps = 7/101 (6%)
Query: 25 MPSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYESLESDTKDTS 84
M P+N + S + W +G GY+V Y+ D E+ D+
Sbjct: 4 MDLGAPQNPNAKAAGSRKIHFNWLPP-----SGKPMGYRVKYWIQGD--SESEAHLLDSK 56
Query: 85 SLSASLQGLGKFTNYSIQVMAFTQAGDGTLSDVIFCRTLED 125
S L L + +Y ++V A+ G+G S ++ CRT ++
Sbjct: 57 VPSVELTNLYPYCDYEMKVCAYGAQGEGPYSSLVSCRTHQE 97
Score = 77.9 bits (192), Expect = 7e-19
Identities = 27/117 (23%), Positives = 46/117 (39%), Gaps = 9/117 (7%)
Query: 10 PQSTIVTILTMYNISMPSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPA 69
P S++V+ T + PS P +A + V+ST +++W NG I Y+V Y
Sbjct: 85 PYSSLVSCRTHQEV--PS-EPGRLAFNVVSSTVTQLSWA--EPAETNGEITAYEVCYGLV 139
Query: 70 EDWYESL----ESDTKDTSSLSASLQGLGKFTNYSIQVMAFTQAGDGTLSDVIFCRT 122
D + + + + ++ L + Y V A AG G + I
Sbjct: 140 NDDNRPIGPMKKVLVDNPKNRMLLIENLRESQPYRYTVKARNGAGWGPEREAIINLA 196
>3p4l_A Neogenin; iron homeostasis, hemojuvelin receptor, FNIII domain,
fibron type III, cell adhesion; 1.80A {Homo sapiens}
PDB: 1x5k_A
Length = 211
Score = 94.5 bits (235), Expect = 2e-25
Identities = 23/103 (22%), Positives = 41/103 (39%), Gaps = 4/103 (3%)
Query: 25 MPSLPPENIACSSVTSTTLKITWE--TVPNEARNGIIQGYKVVYYPAEDWYESLESDTKD 82
+P +PP + S ++ T++ITW ++P + + Y V + + + +
Sbjct: 3 LPMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIP--ANTKYKNAN 60
Query: 83 TSSLSASLQGLGKFTNYSIQVMAFTQAGDGTLSDVIFCRTLED 125
++LS + GL T Y VM T S T E
Sbjct: 61 ATTLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTTFEL 103
Score = 83.3 bits (206), Expect = 3e-21
Identities = 24/118 (20%), Positives = 44/118 (37%), Gaps = 7/118 (5%)
Query: 10 PQSTIVTILTMYNISMPSLPPENIACS--SVTSTTLKITWETVPNEARNGIIQGYKVVYY 67
S T + P+ PP+++ T+ + W+ NG I GY + Y
Sbjct: 91 TWSMTAHGTTFELV--PTSPPKDVTVVSKEGKPKTIIVNWQPPSE--ANGKITGYIIYYS 146
Query: 68 PAEDW-YESLESDTKDTSSLSASLQGLGKFTNYSIQVMAFTQAGDGTLSDVIFCRTLE 124
+ + + L+ +Q L T Y ++ A G G +S+ + RT +
Sbjct: 147 TDVNAEIHDWVIEPVVGNRLTHQIQELTLDTPYYFKIQARNSKGMGPMSEAVQFRTPK 204
>1x5z_A Receptor-type tyrosine-protein phosphatase delta; fibronectin type
III domain containing protein, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 115
Score = 91.2 bits (227), Expect = 3e-25
Identities = 27/116 (23%), Positives = 47/116 (40%), Gaps = 10/116 (8%)
Query: 10 PQSTIVTILTMYNISMPSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPA 69
S + ++T + P P N + T++ ++W R+ I Y++VY
Sbjct: 4 GSSGDIQVITQTGV--PG-QPLNFKAEPESETSILLSWT----PPRSDTIANYELVYKDG 56
Query: 70 EDWYESLESDTKDTSSLSASLQGLGKFTNYSIQVMAFTQAGDGTLSDVIFCRTLED 125
E E + TS LQGL + Y ++ A + G G + I RT++
Sbjct: 57 EHGEEQRITIEPGTS---YRLQGLKPNSLYYFRLAARSPQGLGASTAEISARTMQS 109
>1wfo_A Sidekick 2; FN3, cell adhesion, structural genomics, riken
structural genomics/proteomics initiative, RSGI; NMR
{Homo sapiens} SCOP: b.1.2.1
Length = 130
Score = 89.4 bits (222), Expect = 2e-24
Identities = 25/117 (21%), Positives = 50/117 (42%), Gaps = 5/117 (4%)
Query: 9 EPQSTIVTILTMYNISMPSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYP 68
P + T+ ++ P PP I V +T++++ W+ P A NGII Y++ +
Sbjct: 13 SPSHPPILERTLDDV--PG-PPMGILFPEVRTTSVRLIWQ--PPAAPNGIILAYQITHRL 67
Query: 69 AEDWYESLESDTKDTSSLSASLQGLGKFTNYSIQVMAFTQAGDGTLSDVIFCRTLED 125
+ + S+ + GL + Y ++ A T+ G G ++ + T +
Sbjct: 68 NTTTANTATVEVLAPSARQYTATGLKPESVYLFRITAQTRKGWGEAAEALVVTTEKR 124
Score = 27.7 bits (62), Expect = 0.58
Identities = 9/24 (37%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Query: 103 VMAFTQAGDGTLS-DVIFCRTLED 125
+ + GDG+ S I RTL+D
Sbjct: 3 SGSSGRIGDGSPSHPPILERTLDD 26
>1cfb_A Drosophila neuroglian; neural adhesion molecule; HET: NAG; 2.00A
{Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1
Length = 205
Score = 89.0 bits (221), Expect = 2e-23
Identities = 19/101 (18%), Positives = 35/101 (34%), Gaps = 1/101 (0%)
Query: 26 PSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYESLESDTKDTSS 85
P P+N+ L I+W +P N Y V + ++ D
Sbjct: 104 PFKNPDNVVGQGTEPNNLVISWTPMPEIEHNAPNFHYYVSWKRDIPAAAWENNNIFDWRQ 163
Query: 86 LSASLQGLGKFTNYSIQVMAFTQAGDGTLSD-VIFCRTLED 125
+ + F Y I+V+A G+ ++ + + ED
Sbjct: 164 NNIVIADQPTFVKYLIKVVAINDRGESNVAAEEVVGYSGED 204
Score = 50.5 bits (121), Expect = 8e-09
Identities = 18/98 (18%), Positives = 36/98 (36%), Gaps = 4/98 (4%)
Query: 29 PPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYESLESDTKDTSSLSA 88
P+ + + +I WE I Y + + + + K ++ S+
Sbjct: 8 APKLTG-ITCQADKAEIHWE--QQGDNRSPILHYTIQFNTSFTPASWDAAYEKVPNTDSS 64
Query: 89 SLQGLGKFTNYSIQVMAFTQAGDGTLSD-VIFCRTLED 125
+ + + NY+ +V+AF + G S C T D
Sbjct: 65 FVVQMSPWANYTFRVIAFNKIGASPPSAHSDSCTTQPD 102
>3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin
type III domain, alternative cell membrane, disulfide
bond; 1.90A {Homo sapiens} PDB: 3l5j_A
Length = 290
Score = 89.9 bits (223), Expect = 4e-23
Identities = 22/99 (22%), Positives = 40/99 (40%), Gaps = 5/99 (5%)
Query: 26 PSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYESLESDTKDTSS 85
PS P + V + W+ +P + +NG I+ Y + Y ++ D+S
Sbjct: 197 PSKGP-TVRTKKVGKNEAVLEWDQLPVDVQNGFIRNYTIFYRTIIGNETAV---NVDSSH 252
Query: 86 LSASLQGLGKFTNYSIQVMAFTQAGDGTLSDVIFCRTLE 124
+L L T Y +++ A+T G + F T +
Sbjct: 253 TEYTLSSLTSDTLYMVRMAAYTDEGGKDGPEFTF-TTPK 290
Score = 62.5 bits (152), Expect = 6e-13
Identities = 15/100 (15%), Positives = 30/100 (30%), Gaps = 5/100 (5%)
Query: 26 PSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYESLESDTKDTSS 85
+ P ++ + L + W P E+ I + V+ A + + D +
Sbjct: 101 ATHPVMDLK-AFPKDNMLWVEWT-TPRESVKKYILEWCVLSDKAPCITDWQQEDGTVHRT 158
Query: 86 LSASLQGLGKFTNYSIQVMAFTQAGDGTLSDVIFCRTLED 125
L + Y I V G G+ + +
Sbjct: 159 YL--RGNLAESKCYLITVTPVYADGPGSPESIKA-YLKQA 195
Score = 57.1 bits (138), Expect = 6e-11
Identities = 18/96 (18%), Positives = 35/96 (36%), Gaps = 7/96 (7%)
Query: 24 SMPSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYESLESDTKDT 83
PS + + T+++ W+T+P NG I Y+V W L++ T +
Sbjct: 6 KAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDYEVTLTR---WKSHLQNYTVNA 62
Query: 84 SSLSASLQGLGKFTNYSIQVMAFTQAGDGTLSDVIF 119
+ L+ +L Y + G + +
Sbjct: 63 TKLTVNL----TNDRYLATLTVRNLVGKSDAAVLTI 94
>1wfn_A Sidekick 2; FN3, cell adhesion, structural genomics, riken
structural genomics/proteomics initiative, RSGI; NMR
{Homo sapiens} SCOP: b.1.2.1
Length = 119
Score = 85.2 bits (211), Expect = 7e-23
Identities = 26/110 (23%), Positives = 49/110 (44%), Gaps = 6/110 (5%)
Query: 10 PQSTIVTILTMYNISMPSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPA 69
S + T ++ P P +++ S + T+LK++W+ +NGI+ GY++ +
Sbjct: 4 GSSGPQLVRTHEDV--PG-PVGHLSFSEILDTSLKVSWQ--EPGEKNGILTGYRISWEEY 58
Query: 70 EDWYESLESDTKDTSSLSASLQGLGKFTNYSIQVMAFTQAGDGTLSDVIF 119
+ + +L + GL T Y+I+V A T G G +S
Sbjct: 59 NR-TNTRVTHYLPNVTLEYRVTGLTALTTYTIEVAAMTSKGQGQVSASTI 107
>2ede_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 114
Score = 84.4 bits (209), Expect = 1e-22
Identities = 24/103 (23%), Positives = 41/103 (39%), Gaps = 5/103 (4%)
Query: 26 PSLPPENIACS--SVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYESLES-DTKD 82
P+ P+++ + ++W+ P NG I Y + Y ++ +T
Sbjct: 8 PTSAPKDLTVITREGKPRAVIVSWQ--PPLEANGKITAYILFYTLDKNIPIDDWIMETIS 65
Query: 83 TSSLSASLQGLGKFTNYSIQVMAFTQAGDGTLSDVIFCRTLED 125
L+ + L T Y ++ A G G LSD I RTL+
Sbjct: 66 GDRLTHQIMDLNLDTMYYFRIQARNSKGVGPLSDPILFRTLKV 108
>1wj3_A KIAA1496 protein; beta sandwich, PANG, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
neuropeptide; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 117
Score = 84.1 bits (208), Expect = 2e-22
Identities = 31/117 (26%), Positives = 48/117 (41%), Gaps = 9/117 (7%)
Query: 10 PQSTIVTILTMYNISMPSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPA 69
S V + T + PS PP N+ + T T + + WE V + GYKV Y
Sbjct: 4 GSSGTVNVTTKK--TPPSQPPGNVVWN-ATDTKVLLNWEQVKAMENESEVTGYKVFY--- 57
Query: 70 EDWYESLESDTKDTSSLSASLQGLGKFTNYSIQVMAFTQAGDGTLSD-VIFCRTLED 125
S + ++ +++ L +Y I+V A T GDGT S+ + R
Sbjct: 58 --RTSSQNNVQVLNTNKTSAELVLPIKEDYIIEVKATTDGGDGTSSEQIRIPRITSS 112
>2djs_A Ephrin type-B receptor 1; tyrosine-protein kinase receptor EPH-2,
NET, HEK6, ELK, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 108
Score = 83.7 bits (207), Expect = 2e-22
Identities = 31/102 (30%), Positives = 45/102 (44%), Gaps = 5/102 (4%)
Query: 24 SMPSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYESLESDTKDT 83
S PS P + S T ++ ++W NGII Y++ YY E S +
Sbjct: 6 SGPSTVP-IMHQVSATMRSITLSWPQPEQ--PNGIILDYEIRYYEKEH--NEFNSSMARS 60
Query: 84 SSLSASLQGLGKFTNYSIQVMAFTQAGDGTLSDVIFCRTLED 125
+ +A + GL Y +QV A T AG G S + +TL D
Sbjct: 61 QTNTARIDGLRPGMVYVVQVRARTVAGYGKFSGKMCFQTLTD 102
>1x5l_A Ephrin type-A receptor 8; FN3 domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 111
Score = 83.6 bits (207), Expect = 3e-22
Identities = 28/100 (28%), Positives = 41/100 (41%), Gaps = 5/100 (5%)
Query: 26 PSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYESLESDTKDTSS 85
PS I T++ + W+ NGII Y++ YY + +S T +
Sbjct: 11 PS-QVVVIRQERAGQTSVSLLWQEPEQ--PNGIILEYEIKYYEKDKEMQS--YSTLKAVT 65
Query: 86 LSASLQGLGKFTNYSIQVMAFTQAGDGTLSDVIFCRTLED 125
A++ GL T Y QV A T AG G S + T +
Sbjct: 66 TRATVSGLKPGTRYVFQVRARTSAGCGRFSQAMEVETGKP 105
>1x5j_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 113
Score = 83.0 bits (205), Expect = 5e-22
Identities = 24/104 (23%), Positives = 41/104 (39%), Gaps = 4/104 (3%)
Query: 24 SMPSLPPENIACSSVTSTTLKITWE--TVPNEARNGIIQGYKVVYYPAEDWYESLESDTK 81
S P +PP + S ++ T++ITW ++P + + Y V + + +
Sbjct: 6 SGPMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIP--ANTKYKNA 63
Query: 82 DTSSLSASLQGLGKFTNYSIQVMAFTQAGDGTLSDVIFCRTLED 125
+ ++LS + GL T Y VM T S T E
Sbjct: 64 NATTLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTTFEL 107
>2e7h_A Ephrin type-B receptor 4; FN3 domain, tyrosine- protein kinase
receptor HTK, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 109
Score = 81.7 bits (202), Expect = 1e-21
Identities = 26/102 (25%), Positives = 43/102 (42%), Gaps = 4/102 (3%)
Query: 24 SMPSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYESLESDTKDT 83
S P +I + + ++L + W A +G + Y+V Y+ S T
Sbjct: 6 SGPP-AVSDIRVTRSSPSSLSLAWA--VPRAPSGAVLDYEVKYHEKGAEGPS-SVRFLKT 61
Query: 84 SSLSASLQGLGKFTNYSIQVMAFTQAGDGTLSDVIFCRTLED 125
S A L+GL + +Y +QV A ++AG G +T D
Sbjct: 62 SENRAELRGLKRGASYLVQVRARSEAGYGPFGQEHHSQTQLD 103
>1x5f_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 120
Score = 82.1 bits (203), Expect = 1e-21
Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 3/100 (3%)
Query: 26 PSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYESLESDTKDTSS 85
PS P ++ S V++ +K+TW T P +G Y V Y E +E+ T
Sbjct: 18 PS-APRDVVASLVSTRFIKLTWRT-PASDPHGDNLTYSVFYTKEGIARERVEN-TSHPGE 74
Query: 86 LSASLQGLGKFTNYSIQVMAFTQAGDGTLSDVIFCRTLED 125
+ ++Q L T Y +VMA + G G S + T +
Sbjct: 75 MQVTIQNLMPATVYIFRVMAQNKHGSGESSAPLRVETQPE 114
>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera
phosphorylation, transmembrane, tyrosine-protein kinase,
glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB:
2x10_A* 2x11_A 3mx0_A* 3mbw_A*
Length = 536
Score = 86.4 bits (213), Expect = 4e-21
Identities = 27/116 (23%), Positives = 45/116 (38%), Gaps = 8/116 (6%)
Query: 10 PQSTIVTILTMYNISMPSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPA 69
S + +S+ P + ++T+L ++W + + Y+V Y
Sbjct: 427 VTSRSFRTAS---VSINQTEPPKVRLEGRSTTSLSVSWS--IPPPQQSRVWKYEVTYRKK 481
Query: 70 EDWYESLESDTKDTSSLSASLQGLGKFTNYSIQVMAFTQAGDGTLSDVIFCRTLED 125
+S + + T S +L L T Y +QV A TQ G G S V +TL
Sbjct: 482 ---GDSNSYNVRRTEGFSVTLDDLAPDTTYLVQVQALTQEGQGAGSKVHEFQTLSP 534
Score = 58.6 bits (141), Expect = 2e-11
Identities = 13/112 (11%), Positives = 27/112 (24%), Gaps = 11/112 (9%)
Query: 23 ISMPSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYESLE----- 77
+ P P + + +++ W P ++ Y V
Sbjct: 330 CTRPPSAPHYLT-AVGMGAKVELRWTP-PQDSGGREDIVYSVTCEQCWPESGECGPCEAS 387
Query: 78 ----SDTKDTSSLSASLQGLGKFTNYSIQVMAFTQAGDGTLSDVIFCRTLED 125
+ S ++ L NY+ V A S ++
Sbjct: 388 VRYSEPPHGLTRTSVTVSDLEPHMNYTFTVEARNGVSGLVTSRSFRTASVSI 439
>1ujt_A KIAA1568 protein; fibronectin type III domain, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 120
Score = 80.3 bits (198), Expect = 5e-21
Identities = 26/91 (28%), Positives = 37/91 (40%), Gaps = 6/91 (6%)
Query: 38 VTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDW---YESLESDTKDTSSLSASLQGLG 94
+T TT+++TW IQGY+V+Y D K + SA L L
Sbjct: 27 LTPTTVQVTWTVDRQ---PQFIQGYRVMYRQTSGLQATSSWQNLDAKVPTERSAVLVNLK 83
Query: 95 KFTNYSIQVMAFTQAGDGTLSDVIFCRTLED 125
K Y I+V + G S+ RT E+
Sbjct: 84 KGVTYEIKVRPYFNEFQGMDSESKTVRTTEE 114
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 84.8 bits (209), Expect = 1e-20
Identities = 21/117 (17%), Positives = 37/117 (31%), Gaps = 6/117 (5%)
Query: 12 STIVTILTMYNISMPSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPA-- 69
+ T + P P + V S + I WE V Y
Sbjct: 347 GPALRTRTKC--ADPMRGPRKLEVVEVKSRQITIRWEPFGYNVTRCHSYNLTVHYCYQVG 404
Query: 70 -EDWYESLESDTKDTSSLSASLQGLGKFTNYSIQVMAFTQAGDGTLSDVIFCRTLED 125
++ S + S ++ L +TN S++++ G S + +T ED
Sbjct: 405 GQEQVREEVSWDTENSHPQHTITNLSPYTNVSVKLILMNPEGRKE-SQELIVQTDED 460
Score = 83.7 bits (206), Expect = 4e-20
Identities = 23/123 (18%), Positives = 36/123 (29%), Gaps = 11/123 (8%)
Query: 9 EPQSTIVTILTMYNISMPSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYP 68
+S + + T +P P S + + W G+I Y++ Y
Sbjct: 447 RKESQELIVQTD--EDLPGAVPTESIQGSTFEEKIFLQWREPTQT--YGVITLYEITYKA 502
Query: 69 AE------DWYESLESDTKDTSSLSASLQGLGKFTNYSIQVMAFTQAGDGTLSDVIFCRT 122
D +K + GL T YS + A T G G + F T
Sbjct: 503 VSSFDPEIDLSNQSGRVSKLGNETHFLFFGLYPGTTYSFTIRASTAKGFGPPATNQF-TT 561
Query: 123 LED 125
Sbjct: 562 KIS 564
Score = 58.6 bits (141), Expect = 2e-11
Identities = 23/102 (22%), Positives = 36/102 (35%), Gaps = 7/102 (6%)
Query: 26 PSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYESLESDTKDTSS 85
P +P +SV +T L I + +G I +V Y A + + S
Sbjct: 261 PPVPIAPPQLASVGATYLWIQL-NANSINGDGPIVAREVEYCTASGSWNDRQ----PVDS 315
Query: 86 LSASLQGLGKFTNYSIQVMAFT--QAGDGTLSDVIFCRTLED 125
S + L T Y I V+ + G G+ + RT
Sbjct: 316 TSYKIGHLDPDTEYEISVLLTRPGEGGTGSPGPALRTRTKCA 357
Score = 45.5 bits (107), Expect = 9e-07
Identities = 18/141 (12%), Positives = 36/141 (25%), Gaps = 43/141 (30%)
Query: 26 PSLPPENIACS-SVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYESLESDTKDTS 84
PS+P + + T T+ + + P +R + Y++V ++
Sbjct: 566 PSMPAYELETPLNQTDNTVTVMLK--PAHSRGAPVSVYQIVVEEERPRRTKKTTEILKCY 623
Query: 85 SLSASLQ----------------------------------------GLGKFTNYSIQVM 104
+ Q L + +Y I
Sbjct: 624 PVPIHFQNASLLNSQYYFAAEFPADSLQAAQPFTIGDNKTYNGYWNTPLLPYKSYRIYFQ 683
Query: 105 AFTQAGDGTLSDVIFCRTLED 125
A ++A T D + T
Sbjct: 684 AASRANGETKIDCVQVATKGA 704
>2ed7_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 119
Score = 79.0 bits (195), Expect = 2e-20
Identities = 26/118 (22%), Positives = 48/118 (40%), Gaps = 6/118 (5%)
Query: 8 PEPQSTIVTILTMYNISMPSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYY 67
S I + + +PS P ++ V+S ++++W P G IQ + V++
Sbjct: 2 SSGSSGKPAIPS--SSVLPS-APRDVVPVLVSSRFVRLSWR--PPAEAKGNIQTF-TVFF 55
Query: 68 PAEDWYESLESDTKDTSSLSASLQGLGKFTNYSIQVMAFTQAGDGTLSDVIFCRTLED 125
E +T SL ++ L Y+ +V+A+ + G G S I T +
Sbjct: 56 SREGDNRERALNTTQPGSLQLTVGNLKPEAMYTFRVVAYNEWGPGESSQPIKVATQPE 113
>2edd_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 123
Score = 75.7 bits (186), Expect = 4e-19
Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 4/104 (3%)
Query: 24 SMPSLPPENIACSSVTSTTLKITWE--TVPNEARNGIIQGYKVVYYPAEDWYESLESDTK 81
S P LPP + ++T ++++W +VP + ++ Y V + + S + ++
Sbjct: 16 STPMLPPVGVQAVALTHDAVRVSWADNSVPKNQKTSEVRLYTVRWRTSFS--ASAKYKSE 73
Query: 82 DTSSLSASLQGLGKFTNYSIQVMAFTQAGDGTLSDVIFCRTLED 125
DT+SLS + GL T Y VM T S T E
Sbjct: 74 DTTSLSYTATGLKPNTMYEFSVMVTKNRRSSTWSMTAHATTYEA 117
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone
receptor/immune system complex; 3.80A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1
PDB: 3loh_E
Length = 897
Score = 79.6 bits (195), Expect = 9e-19
Identities = 20/116 (17%), Positives = 45/116 (38%), Gaps = 5/116 (4%)
Query: 10 PQSTIVTILTMYNISMPSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPA 69
+ V+ TM + + + + W+ + NG+I Y+V Y
Sbjct: 777 SVAAYVSARTMPEAKADD-IVGPVTHEIFENNVVHLMWQ--EPKEPNGLIVLYEVSYRRY 833
Query: 70 -EDWYESLESDTKDTSSLSASLQGLGKFTNYSIQVMAFTQAGDGTLSDVIFCRTLE 124
++ ++ L+GL NYS+++ A + AG+G+ ++ + +
Sbjct: 834 GDEELHLCDTRKHFALERGCRLRGL-SPGNYSVRIRATSLAGNGSWTEPTYFYVTD 888
Score = 54.9 bits (131), Expect = 4e-10
Identities = 24/154 (15%), Positives = 45/154 (29%), Gaps = 30/154 (19%)
Query: 1 MLNWLARPEPQSTIVTILTMYNISMPSLPPENIACS--SVTSTTLKITWETVPNEARNGI 58
+ ++ + + I N S E + S + + + WE
Sbjct: 441 KMEEVSGTKGRQERNDIALKTNGDQASCENELLKFSYIRTSFDKILLRWEP-YWPPDFRD 499
Query: 59 IQGYKVVYYPAED----------------------WYESLESDTKDTSSLSASLQGLGKF 96
+ G+ + Y A +D K + ++GL +
Sbjct: 500 LLGFMLFYKEAPYQNVTEFDGQDACGSNSWTVVDIDPPLRSNDPKSQNHPGWLMRGLKPW 559
Query: 97 TNYSIQVMAFTQAGD-----GTLSDVIFCRTLED 125
T Y+I V D G SD+I+ +T
Sbjct: 560 TQYAIFVKTLVTFSDERRTYGAKSDIIYVQTDAT 593
Score = 50.3 bits (119), Expect = 2e-08
Identities = 17/102 (16%), Positives = 27/102 (26%), Gaps = 2/102 (1%)
Query: 24 SMPSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYESLESDTKDT 83
S + + SS T V + + V + K
Sbjct: 687 KTDSQILKELEESSFRKTFEDYLHNVVFVPRPSRKRRSLGDVGNAGNNE--EHRPFEKVV 744
Query: 84 SSLSASLQGLGKFTNYSIQVMAFTQAGDGTLSDVIFCRTLED 125
+ S + GL FT Y I++ A Q V +
Sbjct: 745 NKESLVISGLRHFTGYRIELQACNQDTPEERCSVAAYVSART 786
Score = 48.4 bits (114), Expect = 8e-08
Identities = 18/115 (15%), Positives = 34/115 (29%), Gaps = 12/115 (10%)
Query: 8 PEPQSTIVTILTMYNISMPSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYY 67
+S I+ + T + PS P + S +S+ + + W+ P NG I Y V
Sbjct: 579 YGAKSDIIYVQTDA--TNPS-VPLDPISVSNSSSQIILKWK--PPSDPNGNITHYLV--- 630
Query: 68 PAEDWYESLESDTKDTSSLSASLQGLGKFTNYSIQVMAFTQAGDGTLSDVIFCRT 122
++E D++ +S +
Sbjct: 631 ----FWERQAEDSELFELDYCLKGLKLPSRTWSPPFESEDSQKHNQSEYEDSAGE 681
>2ibg_A CG9211-PA, GH03927P; IHOG, fibronectin type III, protein binding;
2.20A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1
PDB: 2ibb_A
Length = 214
Score = 76.8 bits (189), Expect = 1e-18
Identities = 22/116 (18%), Positives = 45/116 (38%), Gaps = 2/116 (1%)
Query: 7 RPEPQSTIVTILTMYNISMPSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVY 66
+ S + + P PE + + T + + W ++ ++A +I GY Y
Sbjct: 97 KESNTSAKFYLQPGAALD-PMPVPELLEIEEYSETAVVLHW-SLASDADEHLITGYYAYY 154
Query: 67 YPAEDWYESLESDTKDTSSLSASLQGLGKFTNYSIQVMAFTQAGDGTLSDVIFCRT 122
P+ E ++ + + S + L T Y ++ +F+ A S + RT
Sbjct: 155 RPSSSAGEYFKATIEGAHARSFKIAPLETATMYEFKLQSFSAASASEFSALKQGRT 210
Score = 49.4 bits (118), Expect = 2e-08
Identities = 17/99 (17%), Positives = 36/99 (36%), Gaps = 13/99 (13%)
Query: 29 PPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYY---PAEDW--------YESLE 77
PP + ++ ++ + W I +KV Y ++W Y +
Sbjct: 4 PPTPPNVTRLSDESVMLRWM--VPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPK 61
Query: 78 SDTKDTSSLSASLQGLGKFTNYSIQVMAFTQAGDGTLSD 116
+++ S +AS+ L Y +++A D S+
Sbjct: 62 WNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESN 100
>1x5i_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 126
Score = 74.4 bits (183), Expect = 1e-18
Identities = 21/117 (17%), Positives = 48/117 (41%), Gaps = 7/117 (5%)
Query: 10 PQSTIVTILTMYNISMPSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPA 69
+ T + + + P ++ T++ ++W P E +N +++GY + Y
Sbjct: 11 DWLSAETFESDLDETRVPEVPSSLHVR-PLVTSIVVSWT--PPENQNIVVRGYAIGYGIG 67
Query: 70 EDWYESLESDTKDTSSLSASLQGLGKFTNYSIQVMAFTQAGDGT-LSDVIFCRTLED 125
++++ D K +++ L ++Y I + AF G+G L + R
Sbjct: 68 SPHAQTIKVDYKQRY---YTIENLDPSSHYVITLKAFNNVGEGIPLYESAVTRPHTS 121
>2dm4_A Sortilin-related receptor; beta-sandwich, sorting protein-related
receptor containing LDLR class A repeats, sorla; NMR
{Homo sapiens}
Length = 108
Score = 71.7 bits (176), Expect = 1e-17
Identities = 22/101 (21%), Positives = 39/101 (38%), Gaps = 7/101 (6%)
Query: 26 PSLPPE-NIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYESLESDTKDTS 84
P P ++ + W P +G+I+ Y V Y + S ++ +
Sbjct: 8 PDAPRNLQLSLPREAEGVIVGHWA--PPIHTHGLIREYIVEYSRSG----SKMWASQRAA 61
Query: 85 SLSASLQGLGKFTNYSIQVMAFTQAGDGTLSDVIFCRTLED 125
S ++ L T Y+++V A T G G SD T++
Sbjct: 62 SNFTEIKNLLVNTLYTVRVAAVTSRGIGNWSDSKSITTIKG 102
>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane,
disulfide bond, glycoprotein, immunoglobulin domain,
membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A
{Homo sapiens}
Length = 589
Score = 75.8 bits (186), Expect = 2e-17
Identities = 21/101 (20%), Positives = 40/101 (39%), Gaps = 5/101 (4%)
Query: 24 SMPSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYESLESDTKDT 83
+ PS + V + W+ +P + +NG I+ Y + Y ++ D+ T
Sbjct: 494 APPS-KGPTVRTKKVGKNEAVLEWDQLPVDVQNGFIRNYTIFYRTIIGNETAVNVDSSHT 552
Query: 84 SSLSASLQGLGKFTNYSIQVMAFTQAGDGTLSDVIFCRTLE 124
+L L T Y +++ A+T G + F T +
Sbjct: 553 ---EYTLSSLTSDTLYMVRMAAYTDEGGKDGPEFTF-TTPK 589
Score = 63.9 bits (155), Expect = 3e-13
Identities = 20/110 (18%), Positives = 34/110 (30%), Gaps = 4/110 (3%)
Query: 16 TILTMYNISMPSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYES 75
+LT+ + P + L + W T P E+ I + V+ A +
Sbjct: 389 AVLTIPACDFQATHPVMDLKAFPKDNMLWVEWTT-PRESVKKYILEWCVLSDKAPCITDW 447
Query: 76 LESDTKDTSSLSASLQGLGKFTNYSIQVMAFTQAGDGTLSDVIFCRTLED 125
+ D T + L + Y I V G G + I +
Sbjct: 448 QQEDG--TVHRTYLRGNLAESKCYLITVTPVYADGPG-SPESIKAYLKQA 494
Score = 60.0 bits (145), Expect = 6e-12
Identities = 26/106 (24%), Positives = 42/106 (39%), Gaps = 8/106 (7%)
Query: 26 PSLPPEN--IACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPA-EDWYESLESDTKD 82
PP N + S S+ LK+TW ++ II Y + Y + + +
Sbjct: 198 KPNPPHNLSVINSEELSSILKLTWT--NPSIKSVIILKYNIQYRTKDASTWSQIPPEDTA 255
Query: 83 TSSLSASLQGLGKFTNYSIQVMAFTQAGDGTLSD---VIFCRTLED 125
++ S ++Q L FT Y ++ + G G SD T ED
Sbjct: 256 STRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYED 301
Score = 52.3 bits (125), Expect = 4e-09
Identities = 14/102 (13%), Positives = 29/102 (28%), Gaps = 6/102 (5%)
Query: 22 NISMPSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVY-YPAEDWYESLESDT 80
+P P+N++C ++ W+ + + + + + +
Sbjct: 98 ISGLPPEKPKNLSCIVNEGKKMRCEWDGGRE---THLETNFTLKSEWATHKFADCKAKRD 154
Query: 81 KDTSSLSASLQGLGKFTNYSIQVMAFTQAGDGTLSDVIFCRT 122
TS F N + V A G T + F
Sbjct: 155 TPTS--CTVDYSTVYFVNIEVWVEAENALGKVTSDHINFDPV 194
Score = 50.8 bits (121), Expect = 1e-08
Identities = 20/110 (18%), Positives = 40/110 (36%), Gaps = 9/110 (8%)
Query: 12 STIVTILTMYNI--SMPSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPA 69
S + +T + PS + + T+++ W+T+P NG I Y+V
Sbjct: 291 SEEASGITYEDRPSKAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDYEVTL--- 347
Query: 70 EDWYESLESDTKDTSSLSASLQGLGKFTNYSIQVMAFTQAGDGTLSDVIF 119
W L++ T + + L+ +L Y + G + +
Sbjct: 348 TRWKSHLQNYTVNATKLTVNL----TNDRYLATLTVRNLVGKSDAAVLTI 393
>3t04_D Monobody 7C12; engineered binding protein, antibody mimic,
protein-protein SH2 domain, ATP-binding, phosphoprotein;
2.10A {Homo sapiens}
Length = 103
Score = 70.6 bits (173), Expect = 3e-17
Identities = 21/92 (22%), Positives = 36/92 (39%), Gaps = 3/92 (3%)
Query: 24 SMPSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYESLESDTKDT 83
S S P + T T+LKI+W+ + ++ Y++ Y E T
Sbjct: 5 SSVSSVPTKLEVVDATPTSLKISWD--AYYSSWQNVKYYRITYGETGGDSPVQEF-TVPG 61
Query: 84 SSLSASLQGLGKFTNYSIQVMAFTQAGDGTLS 115
+A++ GL +Y+I V A+ G
Sbjct: 62 YYSTATISGLKPGVDYTITVYAYDTFFPGYEP 93
>1x5a_A Ephrin type-A receptor 1; tyrosine-protein kinase receptor, ESK,
fibronectin type III (FN3) domain, structural genomics,
NPPSFA; NMR {Mus musculus} SCOP: b.1.2.1
Length = 107
Score = 68.7 bits (168), Expect = 2e-16
Identities = 19/100 (19%), Positives = 29/100 (29%), Gaps = 7/100 (7%)
Query: 26 PSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYESLESDTKDTSS 85
SL ++ L++TW G + Y++ E +
Sbjct: 9 ESLSGLSLKLVKKEPRQLELTWAGSRPRNPGGNL-SYELHVL------NQDEEWHQMVLE 61
Query: 86 LSASLQGLGKFTNYSIQVMAFTQAGDGTLSDVIFCRTLED 125
L L T Y ++V T G G S RT
Sbjct: 62 PRVLLTKLQPDTTYIVRVRTLTPLGPGPFSPDHEFRTSPP 101
>3qht_C Monobody YSMB-1; fibronectin type III, yeast small ubiquitin-like
modifier, S NOVO protein; 2.40A {Artificial gene}
Length = 97
Score = 67.0 bits (164), Expect = 5e-16
Identities = 21/90 (23%), Positives = 37/90 (41%), Gaps = 6/90 (6%)
Query: 26 PSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYESLESDTKDTSS 85
S P + + T T+L I+W+ + Y++ Y ++ T SS
Sbjct: 4 VSSVPTKLEVVAATPTSLLISWDASS-----SSVSYYRITYGETGG-NSPVQEFTVPGSS 57
Query: 86 LSASLQGLGKFTNYSIQVMAFTQAGDGTLS 115
+A++ GL +Y+I V A+ D S
Sbjct: 58 STATISGLSPGVDYTITVYAYYSYYDLYYS 87
>1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein;
2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1
b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A
Length = 368
Score = 71.4 bits (175), Expect = 6e-16
Identities = 19/91 (20%), Positives = 33/91 (36%), Gaps = 6/91 (6%)
Query: 26 PSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYESLESDTKDTSS 85
P I S +T+ + + W I GY++ ++P E + D S
Sbjct: 185 GLDSPTGIDFSDITANSFTVHWIAP-----RATITGYRIRHHP-EHFSGRPREDRVPHSR 238
Query: 86 LSASLQGLGKFTNYSIQVMAFTQAGDGTLSD 116
S +L L T Y + ++A + L
Sbjct: 239 NSITLTNLTPGTEYVVSIVALNGREESPLLI 269
Score = 62.5 bits (152), Expect = 8e-13
Identities = 17/85 (20%), Positives = 37/85 (43%), Gaps = 5/85 (5%)
Query: 29 PPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYESLESDTKDTSSLSA 88
PP ++ +++ T+++TW P+ + + V Y P ++ E + + S +
Sbjct: 97 PPTDLRFTNIGPDTMRVTWAPPPS----IDLTNFLVRYSPVKNE-EDVAELSISPSDNAV 151
Query: 89 SLQGLGKFTNYSIQVMAFTQAGDGT 113
L L T Y + V + + + T
Sbjct: 152 VLTNLLPGTEYVVSVSSVYEQHEST 176
Score = 62.2 bits (151), Expect = 1e-12
Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 6/90 (6%)
Query: 26 PSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYESLESDTKDTSS 85
S P ++ + T T+L I+W+ ++ Y++ Y ++ T S
Sbjct: 275 VSDVPRDLEVVAATPTSLLISWDAP-----AVTVRYYRITYGETGGN-SPVQEFTVPGSK 328
Query: 86 LSASLQGLGKFTNYSIQVMAFTQAGDGTLS 115
+A++ GL +Y+I V A T GD S
Sbjct: 329 STATISGLKPGVDYTITVYAVTGRGDSPAS 358
Score = 58.3 bits (141), Expect = 3e-11
Identities = 16/94 (17%), Positives = 29/94 (30%), Gaps = 5/94 (5%)
Query: 26 PSLPPENIACSSVTSTT-LKITWETVPNEARNGIIQGYKVVYYPAEDWYESLESDTKDTS 84
P PP N+ + T L ++WE + I GY++ P + +
Sbjct: 1 PLSPPTNLHLEANPDTGVLTVSWE----RSTTPDITGYRITTTPTNGQQGNSLEEVVHAD 56
Query: 85 SLSASLQGLGKFTNYSIQVMAFTQAGDGTLSDVI 118
S + L Y++ V +
Sbjct: 57 QSSCTFDNLSPGLEYNVSVYTVKDDKESVPISDT 90
>3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III
domain, oncofetal splice VARI extra-domain B, EIIIB,
ED-B, angiogenesis, integrin; 2.40A {Homo sapiens}
Length = 375
Score = 68.3 bits (167), Expect = 6e-15
Identities = 17/88 (19%), Positives = 35/88 (39%), Gaps = 5/88 (5%)
Query: 26 PSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYESLESDTKDTSS 85
PP ++ +++ T+++TW P+ + + V Y P E + + S
Sbjct: 186 AVPPPTDLRFTNIGPDTMRVTWAPPPS----IDLTNFLVRYSPV-KNEEDVAELSISPSD 240
Query: 86 LSASLQGLGKFTNYSIQVMAFTQAGDGT 113
+ L L T Y + V + + + T
Sbjct: 241 NAVVLTNLLPGTEYVVSVSSVYEQHEST 268
Score = 65.6 bits (160), Expect = 7e-14
Identities = 15/89 (16%), Positives = 36/89 (40%), Gaps = 5/89 (5%)
Query: 29 PPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYESLESDTKDTSSLSA 88
+++ +T +++ + W + I GY++ A + + D D+S
Sbjct: 98 QLTDLSFVDITDSSIGLRWT----PLNSSTIIGYRITVVAAGEG-IPIFEDFVDSSVGYY 152
Query: 89 SLQGLGKFTNYSIQVMAFTQAGDGTLSDV 117
++ GL +Y I V+ G+ + +
Sbjct: 153 TVTGLEPGIDYDISVITLINGGESAPTTL 181
Score = 62.1 bits (151), Expect = 1e-12
Identities = 20/102 (19%), Positives = 34/102 (33%), Gaps = 8/102 (7%)
Query: 25 MPSLPPENIACSSVTSTT-LKITWETVPNEARNGIIQGYKVVYYPAEDWYESLESDTKDT 83
MP PP N+ + T L ++WE + I GY++ P + +
Sbjct: 1 MPLSPPTNLHLEANPDTGVLTVSWE----RSTTPDITGYRITTTPTNGQQGNSLEEVVHA 56
Query: 84 SSLSASLQGLGKFTNYSIQVMAFTQAGDGTLSDVIFCRTLED 125
S + L Y++ V D S I + +
Sbjct: 57 DQSSCTFDNLSPGLEYNVSVYTV---KDDKESVPISDTIIPE 95
Score = 61.0 bits (148), Expect = 3e-12
Identities = 18/90 (20%), Positives = 31/90 (34%), Gaps = 6/90 (6%)
Query: 26 PSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYESLESDTKDTSS 85
P I S +T+ + + W I GY++ ++P E S
Sbjct: 277 GLDSPTGIDFSDITANSFTVHWIAP-----RATITGYRIRHHPEHFSGRPREDRV-PHSR 330
Query: 86 LSASLQGLGKFTNYSIQVMAFTQAGDGTLS 115
S +L L T Y + ++A + L
Sbjct: 331 NSITLTNLTPGTEYVVSIVALNGREESPLL 360
>2ekj_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 105
Score = 64.0 bits (156), Expect = 1e-14
Identities = 23/98 (23%), Positives = 36/98 (36%), Gaps = 6/98 (6%)
Query: 23 ISMPSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYESLESDTKD 82
S PP N+A +S T +L+++W G + Y + Y PA +S +
Sbjct: 4 GSSGRSPPSNLALASETPDSLQVSWT-----PPLGRVLHYWLTYAPASGL-GPEKSVSVP 57
Query: 83 TSSLSASLQGLGKFTNYSIQVMAFTQAGDGTLSDVIFC 120
+ +L L T Y + V A AG
Sbjct: 58 GARSHVTLPDLQAATKYRVLVSAIYAAGRSEAVSATGQ 95
>2gee_A Hypothetical protein; fibronectin, EIIIB, cancer,
neovascularization, cell adhesion, protein binding,
oncoprotein; 2.01A {Homo sapiens} PDB: 2fnb_A
Length = 203
Score = 66.0 bits (161), Expect = 1e-14
Identities = 18/89 (20%), Positives = 38/89 (42%), Gaps = 5/89 (5%)
Query: 29 PPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYESLESDTKDTSSLSA 88
P +++ +T +++ + W + + I GY++ A + E D D+S
Sbjct: 25 QPTDLSFVDITDSSIGLRWTPLNS----STIIGYRITVVAAGEGIPIFE-DFVDSSVGYY 79
Query: 89 SLQGLGKFTNYSIQVMAFTQAGDGTLSDV 117
++ GL +Y I V G+ T + +
Sbjct: 80 TVTGLEPGIDYDISVYTVKNGGESTPTTL 108
Score = 63.7 bits (155), Expect = 1e-13
Identities = 17/85 (20%), Positives = 37/85 (43%), Gaps = 5/85 (5%)
Query: 29 PPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYESLESDTKDTSSLSA 88
PP ++ +++ T+++TW P+ + + V Y P ++ E + + S +
Sbjct: 116 PPTDLRFTNIGPDTMRVTWAPPPS----IDLTNFLVRYSPVKNE-EDVAELSISPSDNAV 170
Query: 89 SLQGLGKFTNYSIQVMAFTQAGDGT 113
L L T Y + V + + + T
Sbjct: 171 VLTNLLPGTEYVVSVSSVYEQHEST 195
>1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins,
protein-protein interactions, C-type lectin domain;
2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1
Length = 283
Score = 66.4 bits (162), Expect = 2e-14
Identities = 22/101 (21%), Positives = 37/101 (36%), Gaps = 7/101 (6%)
Query: 26 PSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAE-DWYESLESDTKDTS 84
P+N+ S T+T+L + W+ Q YKVVY + Y +
Sbjct: 104 EIDAPKNLRVGSRTATSLDLEWDNSE-----AEAQEYKVVYSTLAGEQYHEVLVPKGIGP 158
Query: 85 SLSASLQGLGKFTNYSIQVMAFTQAGDGTLSDVIFCRTLED 125
+ +L L T Y + + A + + + RT D
Sbjct: 159 TTKTTLTDLVPGTEYGVGISAVMNSKQSIPATMNA-RTELD 198
Score = 64.4 bits (157), Expect = 1e-13
Identities = 16/92 (17%), Positives = 32/92 (34%), Gaps = 8/92 (8%)
Query: 26 PSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYESLESDTKDTSS 85
P ++ ++ + T++ + W +G I Y++ + P+ + TS
Sbjct: 196 ELDSPRDLMVTASSETSISLIWTKA-----SGPIDHYRITFTPSSGISSEVTVPRDRTS- 249
Query: 86 LSASLQGLGKFTNYSIQVMAFTQAGDGTLSDV 117
+L L Y I + A S V
Sbjct: 250 --YTLTDLEPGAEYIISITAERGRQQSLESTV 279
Score = 54.0 bits (130), Expect = 7e-10
Identities = 13/91 (14%), Positives = 23/91 (25%), Gaps = 6/91 (6%)
Query: 29 PPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYESLESDTKDTSSLSA 88
P I V+ T + W + + Y +
Sbjct: 17 GPTQILVRDVSDTVAFVEWTPPR-----AKVDFILLKYGLVGGEGGK-TTFRLQPPLSQY 70
Query: 89 SLQGLGKFTNYSIQVMAFTQAGDGTLSDVIF 119
S+Q L + Y + + A + S F
Sbjct: 71 SVQALRPGSRYEVSISAVRGTNESDASSTQF 101
>2yrz_A Integrin beta-4; GP150, CD104 antigen, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 118
Score = 62.8 bits (153), Expect = 4e-14
Identities = 22/105 (20%), Positives = 40/105 (38%), Gaps = 7/105 (6%)
Query: 8 PEPQSTIVTILTMYNISMPSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYY 67
S + P P + S++ T+L+++W+ P +QGY V Y
Sbjct: 2 SSGSSGSHDSRLTAGV--PD-TPTRLVFSALGPTSLRVSWQ-EP--RCERPLQGYSVEYQ 55
Query: 68 PAEDWYESLESDTKDTSSLSASLQGLGKFTNYSIQVMAFTQAGDG 112
E + + + S ++ L +Y +V A +Q G G
Sbjct: 56 LLNG-GELHRLNIPNPAQTSVVVEDLLPNHSYVFRVRAQSQEGWG 99
>2ee3_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 108
Score = 62.4 bits (152), Expect = 4e-14
Identities = 19/89 (21%), Positives = 33/89 (37%), Gaps = 7/89 (7%)
Query: 24 SMPSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYESLESDTKDT 83
S PP ++ S V+ ++ WE P ++ +V Y +E
Sbjct: 5 SSGLAPPRHLGFSDVSHDAARVFWEGAP-----RPVRLVRVTYVSSEG--GHSGQTEAPG 57
Query: 84 SSLSASLQGLGKFTNYSIQVMAFTQAGDG 112
++ SA L L T Y+++V G
Sbjct: 58 NATSAMLGPLSSSTTYTVRVTCLYPGGGS 86
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 66.0 bits (161), Expect = 4e-14
Identities = 16/92 (17%), Positives = 29/92 (31%), Gaps = 7/92 (7%)
Query: 30 PENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPA--EDWYESLESDTKDTSSLS 87
P +I + + K++ + I Y V Y ED + +
Sbjct: 296 PPSIHGQPSSGKSFKLSIT--KQDDGGAPILEYIVKYRSKDKEDQWLEKKVQGNKDH--- 350
Query: 88 ASLQGLGKFTNYSIQVMAFTQAGDGTLSDVIF 119
L+ L Y +Q+ A + G + F
Sbjct: 351 IILEHLQWTMGYEVQITAANRLGYSEPTVYEF 382
Score = 52.9 bits (127), Expect = 2e-09
Identities = 22/98 (22%), Positives = 37/98 (37%), Gaps = 5/98 (5%)
Query: 29 PPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAE-DWYESLESDTKDTSSLS 87
P + ++ TT K+++ P+ I Y+V + ++ + S T
Sbjct: 198 SPYGVKIIELSQTTAKVSF-NKPDSHGGVPIHHYQVDVKEVASEIWKIVRSHGVQTM--- 253
Query: 88 ASLQGLGKFTNYSIQVMAFTQAGDGTLSDVIFCRTLED 125
L L T Y I+V A G G S + +TL
Sbjct: 254 VVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQTLPV 291
>3k2m_C Monobody HA4; engineered binding protein, antibody mimic,
protein-protein SH2 domain, ATP-binding, phosphoprotein;
1.75A {Homo sapiens} PDB: 3uyo_D 1ttf_A 1ttg_A 3rzw_A
1fna_A
Length = 101
Score = 62.1 bits (151), Expect = 6e-14
Identities = 20/90 (22%), Positives = 39/90 (43%), Gaps = 4/90 (4%)
Query: 26 PSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYESLESDTKDTSS 85
S P + + T T+L I+W+ + + Y++ Y ++ T SS
Sbjct: 4 VSSVPTKLEVVAATPTSLLISWD---APMSSSSVYYYRITYGET-GGNSPVQEFTVPYSS 59
Query: 86 LSASLQGLGKFTNYSIQVMAFTQAGDGTLS 115
+A++ GL +Y+I V A+ + G +
Sbjct: 60 STATISGLSPGVDYTITVYAWGEDSAGYMF 89
>3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A
{Homo sapiens} PDB: 1fnh_A
Length = 290
Score = 64.8 bits (158), Expect = 7e-14
Identities = 23/111 (20%), Positives = 38/111 (34%), Gaps = 13/111 (11%)
Query: 9 EPQSTIVTILTMYNISMPSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYP 68
P +VT L PP + T TT+ I+W + I G++V P
Sbjct: 101 RPAQGVVTTLE------NVSPPRRARVTDATETTITISWR-----TKTETITGFQVDAVP 149
Query: 69 AEDWYESLESDTKDTSSLSASLQGLGKFTNYSIQVMAFTQAGDGTLSDVIF 119
A ++ T S ++ GL T+Y I + + +
Sbjct: 150 ANG--QTPIQRTIKPDVRSYTITGLQPGTDYKIYLYTLNDNARSSPVVIDA 198
Score = 62.1 bits (151), Expect = 9e-13
Identities = 21/99 (21%), Positives = 31/99 (31%), Gaps = 6/99 (6%)
Query: 26 PSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYESLESDTKDTSS 85
P ++ + VT T+L W N + GY+V P E E S
Sbjct: 20 AIPAPTDLKFTQVTPTSLSAQWT-----PPNVQLTGYRVRVTPKEKTGPMKEI-NLAPDS 73
Query: 86 LSASLQGLGKFTNYSIQVMAFTQAGDGTLSDVIFCRTLE 124
S + GL T Y + V A + +
Sbjct: 74 SSVVVSGLMVATKYEVSVYALKDTLTSRPAQGVVTTLEN 112
Score = 61.7 bits (150), Expect = 1e-12
Identities = 17/87 (19%), Positives = 28/87 (32%), Gaps = 6/87 (6%)
Query: 26 PSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYESLESDTKDTSS 85
P N+ + T +L ++W+ I GY + Y
Sbjct: 201 AIDAPSNLRFLATTPNSLLVSWQPP-----RARITGYIIKYEKPGSP-PREVVPRPRPGV 254
Query: 86 LSASLQGLGKFTNYSIQVMAFTQAGDG 112
A++ GL T Y+I V+A
Sbjct: 255 TEATITGLEPGTEYTIYVIALKNNQKS 281
>1qr4_A Protein (tenascin); fibronectin type-III, heparin, extracellular
matrix, adhesion, fusion protein, structural protein;
2.55A {Gallus gallus} SCOP: b.1.2.1 b.1.2.1
Length = 186
Score = 62.5 bits (152), Expect = 2e-13
Identities = 19/89 (21%), Positives = 32/89 (35%), Gaps = 8/89 (8%)
Query: 29 PPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYESLESDTKDTSSLSA 88
P+++ S T TTL + W Y++ Y +E T S
Sbjct: 9 NPKDLEVSDPTETTLSLRWRRPV-----AKFDRYRLTYVSPSGKKNEMEIPVDST---SF 60
Query: 89 SLQGLGKFTNYSIQVMAFTQAGDGTLSDV 117
L+GL T Y+I ++A + +
Sbjct: 61 ILRGLDAGTEYTISLVAEKGRHKSKPTTI 89
Score = 57.8 bits (140), Expect = 1e-11
Identities = 18/100 (18%), Positives = 35/100 (35%), Gaps = 8/100 (8%)
Query: 26 PSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYESLESDTKDTSS 85
P+ I+ S +T + ++W + Y+V Y P + T D S
Sbjct: 94 VVGSPKGISFSDITENSATVSWTPPR-----SRVDSYRVSYVPITG--GTPNVVTVDGSK 146
Query: 86 LSASLQGLGKFTNYSIQVMAFTQAGDGTLSDVIFCRTLED 125
L L +Y++ +++ + I +T D
Sbjct: 147 TRTKLVKLVPGVDYNVNIISVKGFEESEPISGIL-KTALD 185
>1x4x_A Fibronectin type-III domain containing protein 3A; FN3,
immunoglobulin-like beta- sandwich fold, KIAA0970,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 106
Score = 59.6 bits (145), Expect = 5e-13
Identities = 19/97 (19%), Positives = 37/97 (38%), Gaps = 6/97 (6%)
Query: 29 PPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYESLESDTKDTSSLSA 88
+ + ++T ++ WE + + Y++ + E + LS
Sbjct: 10 QCKPPQVTCRSATCAQVNWE--VPLSNGTDVTEYRLEWGGVEGSMQICYC----GPGLSY 63
Query: 89 SLQGLGKFTNYSIQVMAFTQAGDGTLSDVIFCRTLED 125
++GL T Y +V A + G G S+V+ C T
Sbjct: 64 EIKGLSPATTYYCRVQALSVVGAGPFSEVVACVTPPS 100
>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY
acidic protein fold, fibronectin type III fold, hormone-
growth factor complex; NMR {Homo sapiens}
Length = 680
Score = 63.1 bits (152), Expect = 7e-13
Identities = 21/95 (22%), Positives = 35/95 (36%), Gaps = 7/95 (7%)
Query: 26 PSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVY-----YPAEDWYESLESDT 80
+L N +S S T+ I W+ E + + YKV + + + T
Sbjct: 271 ANLRLANSTVNSDGSVTVTIVWD--LPEEPDIPVHHYKVFWSWMVSSKSLVPTKKKRRKT 328
Query: 81 KDTSSLSASLQGLGKFTNYSIQVMAFTQAGDGTLS 115
D S L+ L +Y +++ A T G L
Sbjct: 329 TDGFQNSVILEKLQPDCDYVVELQAITYWGQTRLK 363
Score = 60.7 bits (146), Expect = 4e-12
Identities = 21/129 (16%), Positives = 43/129 (33%), Gaps = 13/129 (10%)
Query: 8 PEPQSTIVTILTMYNISMPSLPPENIACSSV---TSTTLKITWETVPNEARNGIIQGYKV 64
+ + +S PEN++ S + + T +W+ + + G++V
Sbjct: 506 KSHKPIGCLGEAGHVLSKVLAKPENLSASFIVQDVNITGHFSWK-MAKANLYQPMTGFQV 564
Query: 65 VYYPAEDWYESL--------ESDTKDTSSLSASLQGLGKFTNYSIQVMAFTQAGDGTLSD 116
+ +S + ++ L T Y ++V T G+G +
Sbjct: 565 TWAEVTTESRQNSLPNSIISQSQILPSDHYVLTVPNLRPSTLYRLEVQVLTPGGEGPATI 624
Query: 117 VIFCRTLED 125
F RT E
Sbjct: 625 KTF-RTPEL 632
Score = 57.3 bits (137), Expect = 6e-11
Identities = 15/108 (13%), Positives = 29/108 (26%), Gaps = 7/108 (6%)
Query: 23 ISMPSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYESLESDTK- 81
+P P + + + + S L++ W + Y V + S + T
Sbjct: 157 KGVPLKPRKELRFTELQSGQLEVKWS--SKFNISIEPVIYVVQRRWNYGIHPSEDDATHW 214
Query: 82 ----DTSSLSASLQGLGKFTNYSIQVMAFTQAGDGTLSDVIFCRTLED 125
T+ L + Y +V A G +
Sbjct: 215 QTVAQTTDERVQLTDIRPSRWYQFRVAAVNVHGTRGFTAPSKHFRSSK 262
Score = 54.2 bits (129), Expect = 8e-10
Identities = 18/122 (14%), Positives = 34/122 (27%), Gaps = 8/122 (6%)
Query: 8 PEPQSTIVTILTMYNISMPSLPPE-NIACSSVTSTTLKITWETVPNEARNGIIQGYKVVY 66
+ + + + P+ P E +K+ W+ + + Y V +
Sbjct: 384 VKTRKGGIQTQLPFQRRRPTRPLEVGAPFYQDGQLQVKVYWKKTED----PTVNRYHVRW 439
Query: 67 YP---AEDWYESLESDTKDTSSLSASLQGLGKFTNYSIQVMAFTQAGDGTLSDVIFCRTL 123
+P A + E+ + T LQ L Y + V V F
Sbjct: 440 FPEACAHNRTTGSEASSGMTHENYIILQDLSFSCKYKVTVQPIRPKSHSKAEAVFFTTPP 499
Query: 124 ED 125
Sbjct: 500 CS 501
>2edb_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 116
Score = 59.4 bits (144), Expect = 8e-13
Identities = 24/117 (20%), Positives = 48/117 (41%), Gaps = 10/117 (8%)
Query: 10 PQSTIVTILTMYNISMPSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPA 69
S L + P P ++ + + ++W P N +++GY + Y
Sbjct: 4 GSSGPENDLDESQV--PD-QPSSLHVR-PQTNCIIMSWT--PPLNPNIVVRGYIIGYGVG 57
Query: 70 EDWYESLESDTKDTSSLSASLQGLGKFTNYSIQVMAFTQAGDGT-LSDVIFCRTLED 125
+ E++ D+K S++ L ++Y I + AF AG+G L + R++
Sbjct: 58 SPYAETVRVDSKQRY---YSIERLESSSHYVISLKAFNNAGEGVPLYESATTRSITS 111
>3teu_A Fibcon; FN3 domain, fibronectin TPYE III domain, consensus design,
S de novo protein; HET: DIO; 1.00A {Synthetic}
Length = 98
Score = 58.6 bits (142), Expect = 1e-12
Identities = 20/84 (23%), Positives = 36/84 (42%), Gaps = 6/84 (7%)
Query: 29 PPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYESLESDTKDTSSLSA 88
P ++ ++VT T++ ++W + I GY++ Y P+ E E SS S
Sbjct: 4 APTDLQVTNVTDTSITVSWT-----PPSATITGYRITYTPSNGPGEPKELTV-PPSSTSV 57
Query: 89 SLQGLGKFTNYSIQVMAFTQAGDG 112
++ GL Y + V A +
Sbjct: 58 TITGLTPGVEYVVSVYALKDNQES 81
>2db8_A Tripartite motif protein 9, isoform 2; ring finger protein 91,
TRIM9, KIAA0282, RNF91, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 110
Score = 57.9 bits (140), Expect = 2e-12
Identities = 17/100 (17%), Positives = 34/100 (34%), Gaps = 5/100 (5%)
Query: 26 PSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYESLESDTKDTSS 85
P+ P + + + ++W+ GY + K+T
Sbjct: 10 PATPILQLEECCTHNNSATLSWK--QPPLSTVPADGYILELDDGNGGQFREVYVGKETM- 66
Query: 86 LSASLQGLGKFTNYSIQVMAFTQAGDGTLSDVIFCRTLED 125
++ GL + Y+ +V AF + G S + +T E
Sbjct: 67 --CTVDGLHFNSTYNARVKAFNKTGVSPYSKTLVLQTSEG 104
>1j8k_A Fibronectin; EDA, TYPEIII domain, protein binding; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 94
Score = 57.4 bits (139), Expect = 2e-12
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 6/84 (7%)
Query: 29 PPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYESLESDTKDTSSLSA 88
P+ +A + V ++KI WE+ G + Y+V Y ED L D +A
Sbjct: 4 RPKGLAFTDVDVDSIKIAWESP-----QGQVSRYRVTYSSPEDGIHELF-PAPDGEEDTA 57
Query: 89 SLQGLGKFTNYSIQVMAFTQAGDG 112
LQGL + Y++ V+A +
Sbjct: 58 ELQGLRPGSEYTVSVVALHDDMES 81
>2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor;
2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A
1lwr_A
Length = 209
Score = 59.8 bits (145), Expect = 2e-12
Identities = 15/95 (15%), Positives = 29/95 (30%), Gaps = 6/95 (6%)
Query: 26 PSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAE-DWYESLESDTKDTS 84
P+ ++K+ + I+ Y V Y +W + +
Sbjct: 109 EPSAPKLEGQMGEDGNSIKVNLI--KQDDGGSPIRHYLVRYRALSSEWKPEIRLPSGSDH 166
Query: 85 SLSASLQGLGKFTNYSIQVMAFTQAGDGTLSDVIF 119
L+ L Y + V+A Q G + +F
Sbjct: 167 ---VMLKSLDWNAEYEVYVVAENQQGKSKAAHFVF 198
Score = 51.0 bits (122), Expect = 6e-09
Identities = 20/101 (19%), Positives = 36/101 (35%), Gaps = 5/101 (4%)
Query: 26 PSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPA--EDWYESLESDTKDT 83
PS P S+T ++ + P I YK + E W+ + +
Sbjct: 9 PS-SPSIDQ-VEPYSSTAQVQF-DEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEAS 65
Query: 84 SSLSASLQGLGKFTNYSIQVMAFTQAGDGTLSDVIFCRTLE 124
++ GL T Y++++ A G G +S +T
Sbjct: 66 MEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQP 106
>3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural
protein; 1.65A {Homo sapiens}
Length = 197
Score = 59.7 bits (145), Expect = 3e-12
Identities = 21/97 (21%), Positives = 33/97 (34%), Gaps = 4/97 (4%)
Query: 29 PPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYESLESDTKDTSSLSA 88
PP I VT ++ ++WE P I GY V + A
Sbjct: 105 PPGKITLMDVTRNSVSLSWEK-PEHDGGSRILGYIVEMQTKGS---DKWATCATVKVTEA 160
Query: 89 SLQGLGKFTNYSIQVMAFTQAGDGTLSDVIFCRTLED 125
++ GL + YS +V A + G + +D
Sbjct: 161 TITGLIQGEEYSFRVSAQNEKGISDPRQLSVPVIAKD 197
Score = 55.0 bits (133), Expect = 1e-10
Identities = 20/98 (20%), Positives = 41/98 (41%), Gaps = 5/98 (5%)
Query: 29 PPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPA-EDWYESLESDTKDTSSLS 87
PP+++ VT T++ +TW P I+ Y V + Y ++ ++ TS
Sbjct: 8 PPQDLKVKEVTKTSVTLTW-DPPLLDGGSKIKNYIVEKRESTRKAYSTVATNCHKTS--- 63
Query: 88 ASLQGLGKFTNYSIQVMAFTQAGDGTLSDVIFCRTLED 125
+ L + +Y +V+A + G G ++ +
Sbjct: 64 WKVDQLQEGCSYYFRVLAENEYGIGLPAETAESVKASE 101
>2dn7_A Receptor-type tyrosine-protein phosphatase F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.2.1
Length = 107
Score = 57.4 bits (139), Expect = 4e-12
Identities = 25/98 (25%), Positives = 41/98 (41%), Gaps = 8/98 (8%)
Query: 29 PPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPA-EDWYESLESDTKDTSSLS 87
P + S+ T + W P + G + GY++ Y A E +++ D
Sbjct: 10 RPTMMI-STTAMNTALLQWH--PPKELPGELLGYRLQYCRADEARPNTIDFGKDDQH--- 63
Query: 88 ASLQGLGKFTNYSIQVMAFTQAGDGTLSDVIFCRTLED 125
++ GL K T Y ++ A +AG G + RT ED
Sbjct: 64 FTVTGLHKGTTYIFRLAAKNRAGLGEEFEKEI-RTPED 100
>3qwq_B Adnectin; cell surface receptor, tyrosine kinase, glycoprotein,
adnect antitumor, drug, engineered binding protein; HET:
NAG BMA MAN FUC; 2.75A {Homo sapiens} PDB: 3qwr_D*
Length = 114
Score = 57.6 bits (139), Expect = 4e-12
Identities = 19/94 (20%), Positives = 37/94 (39%), Gaps = 6/94 (6%)
Query: 29 PPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYESLESDTKDTSSLSA 88
P ++ + T T+L I+W++ G Q Y++ Y ++ T +A
Sbjct: 6 VPRDLEVVAATPTSLLISWDSGR-----GSYQYYRITYGETGGN-SPVQEFTVPGPVHTA 59
Query: 89 SLQGLGKFTNYSIQVMAFTQAGDGTLSDVIFCRT 122
++ GL +Y+I V A T + +
Sbjct: 60 TISGLKPGVDYTITVYAVTDHKPHADGPHTYHES 93
>3b83_A Ten-D3; beta sheet, computational redesigned protein, alternative
splicing, cell adhesion, coiled coil, EGF-like domain,
extracellular matrix; 2.40A {Homo sapiens}
Length = 100
Score = 56.6 bits (137), Expect = 6e-12
Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 6/84 (7%)
Query: 29 PPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYESLESDTKDTSSLSA 88
PP NI +++T TT +TW+ P I+G V + D + D +S S
Sbjct: 4 PPFNIKVTNITLTTAVVTWQ--PPILP---IEGILVTFGRKNDPSDETTVDL-TSSITSL 57
Query: 89 SLQGLGKFTNYSIQVMAFTQAGDG 112
+L L T Y I+++A
Sbjct: 58 TLTNLEPNTTYEIRIVARNGQQYS 81
>2cum_A Tenascin-X; hexabrachion-like, fibronectin type III domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 105
Score = 56.7 bits (137), Expect = 7e-12
Identities = 18/91 (19%), Positives = 30/91 (32%), Gaps = 8/91 (8%)
Query: 29 PPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYESLESDTKDTSSLSA 88
P ++ VT T +TW P GY + ++ + + T S
Sbjct: 10 APRDLEAKEVTPRTALLTWTEPPVR-----PAGYLLSFHTPGGQTQEILLPGGIT---SH 61
Query: 89 SLQGLGKFTNYSIQVMAFTQAGDGTLSDVIF 119
L GL T+Y+ ++ A F
Sbjct: 62 QLLGLFPSTSYNARLQAMWGQSLLPPVSTSF 92
>2ocf_D Fibronectin; estrogen receptor, LBD, monobody, estradiol,
hormone-growth complex; HET: CME EST; 2.95A {Homo
sapiens}
Length = 121
Score = 55.7 bits (134), Expect = 2e-11
Identities = 20/90 (22%), Positives = 36/90 (40%), Gaps = 6/90 (6%)
Query: 26 PSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYESLESDTKDTSS 85
S P + + T T+L I+W+ A ++ Y++ Y ++ T S
Sbjct: 28 VSDVPTKLEVVAATPTSLLISWD-----APAVTVRYYRITYGETGGN-SPVQEFTVPGSK 81
Query: 86 LSASLQGLGKFTNYSIQVMAFTQAGDGTLS 115
+A++ GL +Y+I V A T
Sbjct: 82 STATISGLKPGVDYTITVYAVTGLRLMLAG 111
>3tes_A Tencon; fibronectin type III domain, FN3, consensus design, de
novo; 2.50A {Synthetic}
Length = 98
Score = 55.2 bits (133), Expect = 2e-11
Identities = 18/84 (21%), Positives = 33/84 (39%), Gaps = 6/84 (7%)
Query: 29 PPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYESLESDTKDTSSLSA 88
P+N+ S VT +L+++W A + + + Y +E E++ S S
Sbjct: 4 APKNLVVSEVTEDSLRLSWT-----APDAAFDSFMIQYQESEKVGEAINLTV-PGSERSY 57
Query: 89 SLQGLGKFTNYSIQVMAFTQAGDG 112
L GL T Y++ +
Sbjct: 58 DLTGLKPGTEYTVSIYGVKGGHRS 81
>2rb8_A Tenascin; beta sheet,loop design, alternative splicing, cell
adhesion, coiled coil, EGF-like domain, extracellular
matrix, glycoprotein; 1.45A {Homo sapiens} PDB: 2rbl_A
1ten_A
Length = 104
Score = 54.7 bits (132), Expect = 3e-11
Identities = 17/84 (20%), Positives = 29/84 (34%), Gaps = 6/84 (7%)
Query: 29 PPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYESLESDTKDTSSLSA 88
P I VT TT ITW P+ + G+++ Y +D +
Sbjct: 5 APSQIEVKDVTDTTALITW-MPPS----QPVDGFELTYGI-KDVPGDRTTIDLTEDENQY 58
Query: 89 SLQGLGKFTNYSIQVMAFTQAGDG 112
S+ L T Y + +++
Sbjct: 59 SIGNLKPDTEYEVSLISRRGDMSS 82
>2dkm_A Collagen alpha-1(XX) chain; FN3 domain, KIAA1510, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 104
Score = 54.1 bits (130), Expect = 6e-11
Identities = 22/102 (21%), Positives = 33/102 (32%), Gaps = 8/102 (7%)
Query: 24 SMPSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYESLESDTKDT 83
S P PP + ++VT T+ +TW+ Y V PA E E +
Sbjct: 6 SGPLPPPRALTLAAVTPRTVHLTWQPSAG------ATHYLVRCSPASPKGEEEEREV-QV 58
Query: 84 SSLSASLQGLGKFTNYSIQVMAFTQAGDGTLSDVIFCRTLED 125
L GL +Y + V + + RT
Sbjct: 59 GRPEVLLDGLEPGRDYEVSVQSLRGPEGSEARGIRA-RTPTS 99
>3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding
homology region (CHR), cell MEMB disease mutation,
glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo
sapiens}
Length = 483
Score = 57.2 bits (137), Expect = 7e-11
Identities = 17/101 (16%), Positives = 36/101 (35%), Gaps = 2/101 (1%)
Query: 26 PSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYESLESDTKDTSS 85
P + + ST +K++W N A+ + ++ + ++ + SS
Sbjct: 381 YPHTPTSFKVKDINSTAVKLSWHLPGNFAKINFLCEIEIKKSNSVQEQRNVTIQGVENSS 440
Query: 86 LSASLQGLGKFTNYSIQV--MAFTQAGDGTLSDVIFCRTLE 124
+L L +T Y+ ++ T S+ T E
Sbjct: 441 YLVALDKLNPYTLYTFRIRCSTETFWKWSKWSNKKQHLTTE 481
Score = 56.8 bits (136), Expect = 9e-11
Identities = 15/101 (14%), Positives = 31/101 (30%), Gaps = 1/101 (0%)
Query: 19 TMYNISMPSLPPENIACSSVTSTTLKITWETVPNEARNG-IIQGYKVVYYPAEDWYESLE 77
T+ P P+ + C + + +W A G Y +V + +
Sbjct: 274 TVIFAGYPPDTPQQLNCETHDLKEIICSWNPGRVTALVGPRATSYTLVESFSGKYVRLKR 333
Query: 78 SDTKDTSSLSASLQGLGKFTNYSIQVMAFTQAGDGTLSDVI 118
++ S Q L Y+ + A G + ++
Sbjct: 334 AEAPTNESYQLLFQMLPNQEIYNFTLNAHNPLGRSQSTILV 374
>1bqu_A Protein (GP130); cytokine receptor, glycoprotein 130, interleukine
6 R beta subunit, signaling protein; 2.00A {Homo
sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1pvh_A 1bj8_A
Length = 215
Score = 55.4 bits (133), Expect = 2e-10
Identities = 21/114 (18%), Positives = 40/114 (35%), Gaps = 5/114 (4%)
Query: 16 TILTMYNISMPSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPA-EDWYE 74
P+ PP N++ + + + ++ II Y + Y +
Sbjct: 94 INFDPVYKVKPN-PPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTWS 152
Query: 75 SLESDTKDTSSLSASLQGLGKFTNYSIQVMAFTQAGDGTLSD---VIFCRTLED 125
+ + ++ S ++Q L FT Y ++ + G G SD T ED
Sbjct: 153 QIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYED 206
Score = 38.8 bits (90), Expect = 1e-04
Identities = 13/92 (14%), Positives = 27/92 (29%), Gaps = 6/92 (6%)
Query: 29 PPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVY-YPAEDWYESLESDTKDTSSLS 87
P+N++C ++ W+ + + + + + + TS
Sbjct: 10 KPKNLSCIVNEGKKMRCEWDGGRE---THLETNFTLKSEWATHKFADCKAKRDTPTS--C 64
Query: 88 ASLQGLGKFTNYSIQVMAFTQAGDGTLSDVIF 119
F N + V A G T + F
Sbjct: 65 TVDYSTVYFVNIEVWVEAENALGKVTSDHINF 96
>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor
complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1
b.1.2.1 b.1.2.1 PDB: 1p9m_A
Length = 303
Score = 55.2 bits (132), Expect = 2e-10
Identities = 27/116 (23%), Positives = 45/116 (38%), Gaps = 9/116 (7%)
Query: 16 TILTMYNISMPSLPPENIA--CSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPA-EDW 72
P+ PP N++ S S+ LK+TW ++ II Y + Y
Sbjct: 190 INFDPVYKVKPN-PPHNLSVINSEELSSILKLTWT--NPSIKSVIILKYNIQYRTKDAST 246
Query: 73 YESLESDTKDTSSLSASLQGLGKFTNYSIQVMAFTQAGDGTLSD---VIFCRTLED 125
+ + + ++ S ++Q L FT Y ++ + G G SD T ED
Sbjct: 247 WSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYED 302
Score = 36.7 bits (84), Expect = 8e-04
Identities = 14/99 (14%), Positives = 27/99 (27%), Gaps = 4/99 (4%)
Query: 21 YNISMPSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYESLESDT 80
+P P+N++C ++ W+ + + + +
Sbjct: 98 IISGLPPEKPKNLSCIVNEGKKMRCEWD--GGRETHLETNFTLKSEWATHKFADCKAKRD 155
Query: 81 KDTSSLSASLQGLGKFTNYSIQVMAFTQAGDGTLSDVIF 119
TS F N + V A G T + F
Sbjct: 156 TPTS--CTVDYSTVYFVNIEVWVEAENALGKVTSDHINF 192
>2haz_A N-CAM 1, neural cell adhesion molecule 1; fibronectin type III
repeat, FN1, beta sandwich; 1.70A {Homo sapiens} SCOP:
b.1.2.1
Length = 105
Score = 52.8 bits (127), Expect = 2e-10
Identities = 20/100 (20%), Positives = 37/100 (37%), Gaps = 5/100 (5%)
Query: 26 PSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPA--EDWYESLESDTKDT 83
PS P S+T ++ ++ P I YK + E W+ + +
Sbjct: 7 PS-SPSID-QVEPYSSTAQVQFDE-PEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEAS 63
Query: 84 SSLSASLQGLGKFTNYSIQVMAFTQAGDGTLSDVIFCRTL 123
++ GL T Y++++ A G G +S +T
Sbjct: 64 MEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQ 103
>2dju_A Receptor-type tyrosine-protein phosphatase F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 106
Score = 51.5 bits (124), Expect = 5e-10
Identities = 27/102 (26%), Positives = 48/102 (47%), Gaps = 7/102 (6%)
Query: 24 SMPSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYESLESDTKDT 83
S P PP ++ + T+T++ +TW++ N + + Y + Y A E D
Sbjct: 6 SGPK-PPIDLVVTETTATSVTLTWDS-GN---SEPVTYYGIQYRAAGTEGPFQEVDG--V 58
Query: 84 SSLSASLQGLGKFTNYSIQVMAFTQAGDGTLSDVIFCRTLED 125
++ S+ GL F+ Y+ +V+A G G S+ + RT E
Sbjct: 59 ATTRYSIGGLSPFSEYAFRVLAVNSIGRGPPSEAVRARTGEQ 100
>2ha1_A Fibronectin; beta sandwich, protein-protein complex, rigid BODY
docking, cell adhesion, structural protein; NMR {Homo
sapiens}
Length = 201
Score = 53.1 bits (127), Expect = 9e-10
Identities = 18/96 (18%), Positives = 32/96 (33%), Gaps = 5/96 (5%)
Query: 29 PPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYESLESDTKDTSSLSA 88
I + + I W N + I Y + + P E+ T S
Sbjct: 4 VEVFITETPSQPNSHPIQW----NAPQPSHISKYILRWRPKNSVGRWKEA-TIPGHLNSY 58
Query: 89 SLQGLGKFTNYSIQVMAFTQAGDGTLSDVIFCRTLE 124
+++GL Y Q+++ Q G ++ F T
Sbjct: 59 TIKGLKPGVVYEGQLISIQQYGHQEVTRFDFTTTST 94
Score = 51.6 bits (123), Expect = 3e-09
Identities = 14/97 (14%), Positives = 41/97 (42%), Gaps = 6/97 (6%)
Query: 26 PSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYESLESDTKDTSS 85
L + + + +T+++ ++W + + G++V Y +E+ + + +++
Sbjct: 111 SPLVATSESVTEITASSFVVSWVSAS-----DTVSGFRVEYELSEEG-DEPQYLDLPSTA 164
Query: 86 LSASLQGLGKFTNYSIQVMAFTQAGDGTLSDVIFCRT 122
S ++ L Y + V ++ G+ +L T
Sbjct: 165 TSVNIPDLLPGRKYIVNVYQISEDGEQSLILSTSQTT 201
>2e3v_A Neural cell adhesion molecule 1, 140 kDa isoform; NCAM, N-CAM 1,
NCAM-120, CD56 antigen, membra protein, glycoprotein,
structural genomics, NPPSFA; HET: PGE BTB; 1.95A {Homo
sapiens}
Length = 122
Score = 51.3 bits (123), Expect = 1e-09
Identities = 21/105 (20%), Positives = 38/105 (36%), Gaps = 5/105 (4%)
Query: 24 SMPSLPPE--NIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPA--EDWYESLESD 79
S S P +I S+T ++ + P I YK + E W+
Sbjct: 2 SSGSSGPSSPSIDQVEPYSSTAQVQF-DEPEATGGVPILKYKAEWRAVGEEVWHSKWYDA 60
Query: 80 TKDTSSLSASLQGLGKFTNYSIQVMAFTQAGDGTLSDVIFCRTLE 124
+ + ++ GL T Y++++ A G G +S +T
Sbjct: 61 KEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQP 105
>1wk0_A KIAA0970 protein; fibronectin type III domain, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 137
Score = 51.1 bits (122), Expect = 2e-09
Identities = 25/112 (22%), Positives = 41/112 (36%), Gaps = 14/112 (12%)
Query: 23 ISMPSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYESLESDTKD 82
++ S + +A S + + T+ +TW + P+ NG V YE L S T
Sbjct: 15 EALLSNIVKPVA-SDIQARTVVLTW-SPPSSLINGETDESSVPEL---YGYEVLISSTGK 69
Query: 83 ---------TSSLSASLQGLGKFTNYSIQVMAFTQAGDGTLSDVIFCRTLED 125
+ +L L +Y +V A + GT S+ TL
Sbjct: 70 DGKYKSVYVGEETNITLNDLKPAMDYHAKVQAEYNSIKGTPSEAEIFTTLSC 121
>1wfu_A Unnamed protein product; FN3 domain, similar to 1700007B22RIK
protein, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: b.1.2.1
Length = 120
Score = 50.3 bits (120), Expect = 2e-09
Identities = 18/98 (18%), Positives = 35/98 (35%)
Query: 25 MPSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYESLESDTKDTS 84
+P P VT ++++ W+ E R G + + ED
Sbjct: 14 VPLSKPHPPVVGKVTHHSIELYWDLEQKEKRQGPQEQWLRFSIEEEDPKMHSYGVIYTGY 73
Query: 85 SLSASLQGLGKFTNYSIQVMAFTQAGDGTLSDVIFCRT 122
+ ++GL T Y ++ + +G+ S V+ T
Sbjct: 74 ATRHVVEGLEPRTLYKFRLKVTSPSGEYEYSPVVSVAT 111
>2h41_A Fibronectin; beta sandwich, cell adhesion, structural protein; NMR
{Homo sapiens} PDB: 2h45_A
Length = 95
Score = 49.4 bits (118), Expect = 4e-09
Identities = 13/88 (14%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 28 LPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYESLESDTKDTSSLS 87
L + + + +T+++ ++W + + + G++V Y +E+ + + +++ S
Sbjct: 7 LVATSESVTEITASSFVVSWV-----SASDTVSGFRVEYELSEE-GDEPQYLDLPSTATS 60
Query: 88 ASLQGLGKFTNYSIQVMAFTQAGDGTLS 115
++ L Y + V ++ G+ +L
Sbjct: 61 VNIPDLLPGRKYIVNVYQISEDGEQSLI 88
>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein,
immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG;
2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB:
1p9m_C 2arw_A
Length = 325
Score = 49.5 bits (117), Expect = 3e-08
Identities = 15/96 (15%), Positives = 36/96 (37%), Gaps = 8/96 (8%)
Query: 25 MPSLPPENIACSSV--TSTTLKITWETVPNEARNGIIQGYKVVYYP--AEDWYESLESDT 80
+ PP NI ++V L +TW+ + + +++ Y ++ + + D
Sbjct: 195 LQPDPPANITVTAVARNPRWLSVTWQDPHSWNSSFYRLRFELRYRAERSKTFTTWMVKDL 254
Query: 81 KDTSSLSASLQGLGKFTNYSIQVMAFTQAGDGTLSD 116
+ + + +Q+ A + G G S+
Sbjct: 255 QH----HCVIHDAWSGLRHVVQLRAQEEFGQGEWSE 286
Score = 29.1 bits (64), Expect = 0.35
Identities = 14/100 (14%), Positives = 29/100 (29%), Gaps = 2/100 (2%)
Query: 22 NISMPSLPPENIACSSVTSTTLKITWETV--PNEARNGIIQGYKVVYYPAEDWYESLESD 79
+ +P P+ + + W P+ ++ K PAED+ E +
Sbjct: 90 LVDVPPEEPQLSCFRKSPLSNVVCEWGPRSTPSLTTKAVLLVRKFQNSPAEDFQEPCQYS 149
Query: 80 TKDTSSLSASLQGLGKFTNYSIQVMAFTQAGDGTLSDVIF 119
+ G + Y + + + G F
Sbjct: 150 QESQKFSCQLAVPEGDSSFYIVSMCVASSVGSKFSKTQTF 189
>2cuh_A Tenascin-X; fibronectin type III domain, extracellular matrix,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 115
Score = 47.4 bits (113), Expect = 3e-08
Identities = 13/97 (13%), Positives = 27/97 (27%), Gaps = 9/97 (9%)
Query: 29 PPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYESLESDTKDTSSLSA 88
P + ++T + W+ + Y + S++
Sbjct: 10 GPTQLRALNLTEGFAVLHWKPPQ-----NPVDTYDIQVTAPGA---PPLQAETPGSAVDY 61
Query: 89 SLQGLGKFTNYSIQVMAFTQAGDGTLSDVIFCRTLED 125
L L TNY+ V + + + F T +
Sbjct: 62 PLHDLVLHTNYTATVRGLRGPNLTSPASITF-TTGLE 97
>1x3d_A Fibronectin type-III domain containing protein 3A; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 118
Score = 47.4 bits (113), Expect = 3e-08
Identities = 16/113 (14%), Positives = 32/113 (28%), Gaps = 7/113 (6%)
Query: 10 PQSTIVTILTMYNISMPSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPA 69
S T+ P P ++ T +L + W+ IQ + + +
Sbjct: 4 GSSGAEIFTTL--SCEPD-IPNPPRIANRTKNSLTLQWK--APSDNGSKIQNFVLEWDEG 58
Query: 70 EDWYESLESDTKDTSSLSASLQGLGKFTNYSIQVMAFTQAGDGTLSDVIFCRT 122
+ E + S + L ++ A G S+ + T
Sbjct: 59 KGNGEFCQCY--MGSQKQFKITKLSPAMGCKFRLSARNDYGTSGFSEEVLYYT 109
>2kbg_A N-CAM 2, neural cell adhesion molecule 2; fibronectin type III
module, beta-sheet sandwich, cell membrane,
glycoprotein, immunoglobulin domain; NMR {Homo sapiens}
Length = 114
Score = 46.4 bits (110), Expect = 7e-08
Identities = 17/93 (18%), Positives = 30/93 (32%), Gaps = 8/93 (8%)
Query: 29 PPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYP--AEDWYESLESDTKDTSSL 86
PP +I + + K++ + I Y V Y ED + +
Sbjct: 11 PP-SIHGQPSSGKSFKLSIT--KQDDGGAPILEYIVKYRSKDKEDQWLEKKVQGNKDH-- 65
Query: 87 SASLQGLGKFTNYSIQVMAFTQAGDGTLSDVIF 119
L+ L Y +Q+ A + G + F
Sbjct: 66 -IILEHLQWTMGYEVQITAANRLGYSEPTVYEF 97
>3se4_A Interferon alpha/beta receptor 1; type I interferon signaling
complex, extracellular space, IM system receptor; HET:
NAG; 3.50A {Homo sapiens} PDB: 3se3_A*
Length = 414
Score = 48.1 bits (113), Expect = 1e-07
Identities = 19/118 (16%), Positives = 30/118 (25%), Gaps = 5/118 (4%)
Query: 12 STIVTILTMYNISMPSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAED 71
S + L P S S + I +IQ Y ++Y
Sbjct: 294 SFWSEEIKFDTEIQAFLLPPVFNIRS-LSDSFHIYIGAPKQSGNTPVIQDYPLIYEIIFW 352
Query: 72 WYESLESDTKDTSSLSASLQGLGKFTNYSIQVMAFTQAGD----GTLSDVIFCRTLED 125
S ++ L T Y ++ A T SD + +T
Sbjct: 353 ENTSNAERKIIEKKTDVTVPNLKPLTVYCVKARAHTMDEKLNKSSVFSDAVCEKTKPG 410
Score = 37.3 bits (85), Expect = 5e-04
Identities = 9/98 (9%), Positives = 27/98 (27%), Gaps = 6/98 (6%)
Query: 29 PPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVY--YPAEDWYESLESDTKDTSSL 86
P+ + + + + W N + Y ++W + ++
Sbjct: 10 SPQKVEVDIIDDNFI-LRWNRSDESVGNVT---FSFDYQKTGMDNWIKLSGCQNITSTKC 65
Query: 87 SASLQGLGKFTNYSIQVMAFTQAGDGTLSDVIFCRTLE 124
+ S L + +++ A + F +
Sbjct: 66 NFSSLKLNVYEEIKLRIRAEKENTSSWYEVDSFTPFRK 103
Score = 36.1 bits (82), Expect = 0.002
Identities = 14/118 (11%), Positives = 31/118 (26%), Gaps = 3/118 (2%)
Query: 10 PQSTIVTILTMYNISMPSLPPENIACSSVTSTTLKITWETVPNEARNGI--IQGYKVVYY 67
+ + LPP SV + + W+ + + +
Sbjct: 189 KIGVYSPVHCIKTTVENELPPPENIEVSVQNQNYVLKWDYTYANMTFQVQWLHAFLKRNP 248
Query: 68 PAEDWYESLESDTKDTSSLSASL-QGLGKFTNYSIQVMAFTQAGDGTLSDVIFCRTLE 124
+ D ++ + Q + + Y ++V A S+ I T
Sbjct: 249 GNHLYKWKQIPDCENVKTTQCVFPQNVFQKGIYLLRVQASDGNNTSFWSEEIKFDTEI 306
Score = 29.2 bits (64), Expect = 0.32
Identities = 15/91 (16%), Positives = 28/91 (30%), Gaps = 6/91 (6%)
Query: 25 MPSLPPENIACSSVTSTTLKITWET--VPNEARNGIIQGYKVVYYPAEDWYESLESDTKD 82
PPE + + + I+ T A +G+ Y +V + E + +
Sbjct: 104 AQIGPPEVHLEAEDKAIVIHISPGTKDSVMWALDGLSFTYSLVIWKNSSGVE----ERIE 159
Query: 83 TSSLSASLQGLGKFTNYSIQVMAFTQAGDGT 113
+ L T Y ++V A
Sbjct: 160 NIYSRHKIYKLSPETTYCLKVKAALLTSWKI 190
>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine,
ligand-receptor complex, signaling protein-cytokin; HET:
NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1
Length = 313
Score = 47.6 bits (112), Expect = 1e-07
Identities = 23/119 (19%), Positives = 39/119 (32%), Gaps = 12/119 (10%)
Query: 16 TILTMYNISMPSLPPENIA------CSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPA 69
L ++ PP + + L+++WE P + I Q ++ + P
Sbjct: 193 LCLDPMDVVKLE-PPMLRTMDPSPEAAPPQAGCLQLSWE--PWQPGLHINQKCELRHKPQ 249
Query: 70 EDWYESLESDTKDTSSLSASLQGLGKFTNYSIQVMAFTQAGDGTLSD---VIFCRTLED 125
+L L GL T Y++Q+ G SD + RT E
Sbjct: 250 RGEASWALVGPLPLEALQYELCGLLPATAYTLQIRCIRWPLPGHWSDWSPSLELRTTER 308
Score = 28.0 bits (61), Expect = 0.96
Identities = 18/105 (17%), Positives = 35/105 (33%), Gaps = 10/105 (9%)
Query: 22 NISMPSLPPENIAC-SSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYESLESDT 80
P P N++C ++T+++L WE P + + + + + ++
Sbjct: 94 RAGYPPAIPHNLSCLMNLTTSSLICQWEPGPE---THLPTSFTLKSFKSRGNCQTQGDSI 150
Query: 81 KD------TSSLSASLQGLGKFTNYSIQVMAFTQAGDGTLSDVIF 119
D S S + L + N I V A G +
Sbjct: 151 LDCVPKDGQSHCSIPRKHLLLYQNMGIWVQAENALGTSMSPQLCL 195
>1uem_A KIAA1568 protein; immunoglobulin-like beta-sandwich fold,
fibronectin type III, structural genomics; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 117
Score = 45.4 bits (108), Expect = 2e-07
Identities = 20/101 (19%), Positives = 40/101 (39%), Gaps = 12/101 (11%)
Query: 29 PPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYY--PAEDWYESLESDTKDTSSL 86
PP + VT ++ ++W+ P Y + + + ++++ + K T
Sbjct: 18 PPSKPQVTDVTKNSVTLSWQ--PGTPGTLPASAYIIEAFSQSVSNSWQTVANHVKTT--- 72
Query: 87 SASLQGLGKFTNYSIQVMAFTQAGDG---TLSDVIFCRTLE 124
+++GL T Y V A G +SD + RT +
Sbjct: 73 LYTVRGLRPNTIYLFMVRAINPQGLSDPSPMSDPV--RTQD 111
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Length = 305
Score = 47.1 bits (112), Expect = 2e-07
Identities = 23/100 (23%), Positives = 35/100 (35%), Gaps = 9/100 (9%)
Query: 29 PPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYY--PAEDWYESLESDTKDTSSL 86
PP + S V+ ++ +TW P I Y V AE W
Sbjct: 201 PPRGVKVSDVSRDSVNLTWTE-PASDGGSKITNYIVEKCATTAERWLR-----VGQARET 254
Query: 87 SASLQGLGKFTNYSIQVMAFTQAGDGTLSDVI-FCRTLED 125
++ L T+Y +V+A + G S+ T ED
Sbjct: 255 RYTVINLFGKTSYQFRVIAENKFGLSKPSEPSEPTITKED 294
>2crm_A Fibronectin type-III domain containing protein 3A; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 120
Score = 45.1 bits (107), Expect = 3e-07
Identities = 21/115 (18%), Positives = 40/115 (34%), Gaps = 9/115 (7%)
Query: 10 PQSTIVTILTMYNISMPSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYY-- 67
S +V T P +P + + S + KITW+ P + I Y V
Sbjct: 4 GSSGVVEFTTC--PDKPGIPVKPSVKGKIHSHSFKITWD-PPKDNGGATINKYVVEMAEG 60
Query: 68 PAEDWYESLESDTKDTSSLSASLQGLGKFTNYSIQVMAFTQAGDGTLSDVIFCRT 122
+ +E + ++ L Y ++V + G +S+ + +T
Sbjct: 61 SNGNKWEMIY----SGATREHLCDRLNPGCFYRLRVYCISDGGQSAVSESLLVQT 111
>1uey_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, NG-CAM
related cell adhesion molecule, fibronectin type III
domain, structural genomics; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 127
Score = 45.1 bits (107), Expect = 3e-07
Identities = 19/98 (19%), Positives = 38/98 (38%), Gaps = 3/98 (3%)
Query: 29 PPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYESLESDTKDTSSLSA 88
PP ++ + +++++W P + N I + + Y A T+ + + +
Sbjct: 19 PPFDLELTDQLDKSVQLSWT--PGDDNNSPITKFIIEYEDAMHKPGLWHHQTEVSGTQTT 76
Query: 89 SLQGLGKFTNYSIQVMAFTQAGDGTLSDVI-FCRTLED 125
+ L + NYS +VMA G S+ T
Sbjct: 77 AQLNLSPYVNYSFRVMAVNSIGKSLPSEASEQYLTKAS 114
>3v6o_A Leptin receptor; receptor-antibody complex, cytokine receptor,
antibody FAB F immunoglobulin fold; HET: NAG; 1.95A
{Homo sapiens}
Length = 206
Score = 46.2 bits (109), Expect = 3e-07
Identities = 21/89 (23%), Positives = 35/89 (39%), Gaps = 4/89 (4%)
Query: 29 PPENIACSSVTSTT-LKITWETVPNEARNGIIQGYKVVYYPAEDWYESLESDTKDTSSLS 87
PP ++ + LKI+WE P N + +++ Y + + + D S S
Sbjct: 112 PPSSVKAEITINIGLLKISWEK-PVFPENNLQ--FQIRYGLSGKEVQWKMYEVYDAKSKS 168
Query: 88 ASLQGLGKFTNYSIQVMAFTQAGDGTLSD 116
SL Y++QV G G S+
Sbjct: 169 VSLPVPDLCAVYAVQVRCKRLDGLGYWSN 197
Score = 34.7 bits (79), Expect = 0.004
Identities = 10/102 (9%), Positives = 28/102 (27%), Gaps = 13/102 (12%)
Query: 29 PPENIAC-SSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYESLESD-------- 79
NI+C + T + W + ++ ++ Y+ + + + S
Sbjct: 3 VNINISCETDGYLTKMTCRWS--TSTIQSLAESTLQLRYHRSSLYCSDIPSIHPISEPKD 60
Query: 80 --TKDTSSLSASLQGLGKFTNYSIQVMAFTQAGDGTLSDVIF 119
+ Q + + Y++ + G
Sbjct: 61 CYLQSDGFYECIFQPIFLLSGYTMWIRINHSLGSLDSPPTCV 102
>2yux_A Myosin-binding protein C, SLOW-type; fibronectin III domain,
structural genomics., NPPSFA; NMR {Homo sapiens}
Length = 120
Score = 44.7 bits (106), Expect = 3e-07
Identities = 19/91 (20%), Positives = 34/91 (37%), Gaps = 7/91 (7%)
Query: 29 PPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPA--EDWYESLESDTKDTSSL 86
PP+ + V + +TW T P + N I GY + +W+ +E
Sbjct: 20 PPQIVKIEDVWGENVALTW-TPPKDDGNAAITGYTIQKADKKSMEWFTVIEH----YHRT 74
Query: 87 SASLQGLGKFTNYSIQVMAFTQAGDGTLSDV 117
SA++ L Y +V + G + +
Sbjct: 75 SATITELVIGNEYYFRVFSENMCGLSEDATM 105
>1x5x_A Fibronectin type-III domain containing protein 3A; structural
genomics, KIAA0970, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 109
Score = 44.3 bits (105), Expect = 4e-07
Identities = 18/99 (18%), Positives = 38/99 (38%), Gaps = 7/99 (7%)
Query: 29 PPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYP--AEDWYESLESDTKDTSSL 86
P + + T L + W + P+ + Y + + ++ D L
Sbjct: 10 MPASPVLTKAGITWLSLQW-SKPSGTPSDEGISYILEMEEETSGYGFKP----KYDGEDL 64
Query: 87 SASLQGLGKFTNYSIQVMAFTQAGDGTLSDVIFCRTLED 125
+ +++ L + T Y +V+A+ G S+V+ T D
Sbjct: 65 AYTVKNLRRSTKYKFKVIAYNSEGKSNPSEVVEFTTCPD 103
>1x5y_A Myosin binding protein C, fast-type; fast MYBP-C, fibronectin type
III domain containing protein, cytoskeleton, muscle
contraction; NMR {Mus musculus} SCOP: b.1.2.1
Length = 111
Score = 44.3 bits (105), Expect = 4e-07
Identities = 22/98 (22%), Positives = 38/98 (38%), Gaps = 9/98 (9%)
Query: 29 PPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYP--AEDWYESLESDTKDTSSL 86
P+++ VT TT + W P+ G I GY V Y +E+W + + +
Sbjct: 11 APQHLTVEDVTDTTTTLKWRP-PDRIGAGGIDGYLVEYCLEGSEEWVPANKEPVERC--- 66
Query: 87 SASLQGLGKFTNYSIQVMAFTQAGDG---TLSDVIFCR 121
+++ L +V+ AG TL + R
Sbjct: 67 GFTVKDLPTGARILFRVVGVNIAGRSEPATLLQPVTIR 104
>2yuw_A Myosin binding protein C, SLOW type; fibronectin III domain, SLOW-
type protein, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 110
Score = 44.3 bits (105), Expect = 5e-07
Identities = 24/101 (23%), Positives = 38/101 (37%), Gaps = 9/101 (8%)
Query: 26 PSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYP--AEDWYESLESDTKDT 83
+ PP + SVT TT+ + W P+ + GY + Y EDW + + T
Sbjct: 7 GTSPPTLLTVDSVTDTTVTMRWRP-PDHIGAAGLDGYVLEYCFEGTEDWIVANKDLIDKT 65
Query: 84 SSLSASLQGLGKFTNYSIQVMAFTQAGDG---TLSDVIFCR 121
++ GL ++V A AG S I +
Sbjct: 66 ---KFTITGLPTDAKIFVRVKAVNAAGASEPKYYSQPILVK 103
>2cui_A Tenascin-X; fibronectin type III domain, extracellular matirx,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 112
Score = 44.2 bits (104), Expect = 5e-07
Identities = 17/104 (16%), Positives = 32/104 (30%), Gaps = 13/104 (12%)
Query: 29 PPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYESLESDTKDT----- 83
++ + VT+++L++ W EA G + + +
Sbjct: 11 RLSQLSVTDVTTSSLRLNW-----EAPPGAFDSFLLRFGVPSPSTLEPHPRPLLQRELMV 65
Query: 84 --SSLSASLQGLGKFTNYSIQVMAFTQAGDGTLSDVIFCRTLED 125
+ SA L+ L T YS+ + RTL
Sbjct: 66 PGTRHSAVLRDLRSGTLYSLTLYGLRGPHKADSIQGTA-RTLSG 108
>2q7n_A Leukemia inhibitory factor receptor; cytokine cell surface receptor
complex LIFR LIF, cytokine RE cytokine complex; HET: NAG
FUC MAN; 4.00A {Mus musculus}
Length = 488
Score = 45.7 bits (107), Expect = 7e-07
Identities = 12/80 (15%), Positives = 27/80 (33%), Gaps = 4/80 (5%)
Query: 26 PSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYESLESDTKD--T 83
P ++ + ST + +W I ++ A E + +
Sbjct: 386 APHDPTSLKVKDINSTVVTFSWY--LPGNFTKINLLCQIEICKANSKKEVRNATIRGAED 443
Query: 84 SSLSASLQGLGKFTNYSIQV 103
S+ ++ L +T Y+ +V
Sbjct: 444 STYHVAVDKLNPYTAYTFRV 463
Score = 39.2 bits (90), Expect = 1e-04
Identities = 10/101 (9%), Positives = 26/101 (25%), Gaps = 1/101 (0%)
Query: 19 TMYNISMPSLPPENIACSSVTSTTLKITWE-TVPNEARNGIIQGYKVVYYPAEDWYESLE 77
T+ P P+ ++C + + +W Y + +
Sbjct: 279 TVVFAGYPPDVPQKLSCETHDLKEIICSWNPGRITGLVGPRNTEYTLFESISGKSAVFHR 338
Query: 78 SDTKDTSSLSASLQGLGKFTNYSIQVMAFTQAGDGTLSDVI 118
+ + +Q ++ + G + VI
Sbjct: 339 IEGLTNETYRLGVQMHPGQEIHNFTLTGRNPLGQAQSAVVI 379
>2ic2_A CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin type III, protein
binding; HET: MSE; 1.30A {Drosophila melanogaster} SCOP:
b.1.2.1
Length = 115
Score = 43.4 bits (102), Expect = 9e-07
Identities = 17/99 (17%), Positives = 36/99 (36%), Gaps = 13/99 (13%)
Query: 29 PPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYY---PAEDW--------YESLE 77
PP + ++ ++ + W I +KV Y ++W Y +
Sbjct: 5 PPTPPNVTRLSDESVMLRWM--VPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPK 62
Query: 78 SDTKDTSSLSASLQGLGKFTNYSIQVMAFTQAGDGTLSD 116
+++ S +AS+ L Y +++A D S+
Sbjct: 63 WNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESN 101
>1x4z_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes
(CDON)binding...; fibronectin type III, FN3; NMR {Mus
musculus} SCOP: b.1.2.1
Length = 121
Score = 42.4 bits (100), Expect = 2e-06
Identities = 22/89 (24%), Positives = 36/89 (40%), Gaps = 3/89 (3%)
Query: 29 PPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYY-PAEDWYESLESDTKDTSSLS 87
P+ S+ + T++ +TW P IQ ++V Y + L + S LS
Sbjct: 20 APDRPTISTASETSVYVTWI--PRGNGGFPIQSFRVEYKKLKKVGDWILATSAIPPSRLS 77
Query: 88 ASLQGLGKFTNYSIQVMAFTQAGDGTLSD 116
+ GL K +Y +V A G+ S
Sbjct: 78 VEITGLEKGISYKFRVRALNMLGESEPSA 106
>1cd9_B G-CSF-R, protein (G-CSF receptor); class1 cytokine, hematopoietic
receptor, signal transduction cytokine; HET: NAG; 2.80A
{Mus musculus} SCOP: b.1.2.1 b.1.2.1 PDB: 1pgr_B 1cto_A
1gcf_A
Length = 215
Score = 43.3 bits (101), Expect = 3e-06
Identities = 17/94 (18%), Positives = 29/94 (30%), Gaps = 8/94 (8%)
Query: 29 PPENIA------CSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYESLESDTKD 82
PP A S L ++W+ + Q ++ Y P
Sbjct: 111 PPMLQALDIGPDVVSHQPGCLWLSWKPWKPS--EYMEQECELRYQPQLKGANWTLVFHLP 168
Query: 83 TSSLSASLQGLGKFTNYSIQVMAFTQAGDGTLSD 116
+S L GL + Y++Q+ + G S
Sbjct: 169 SSKDQFELCGLHQAPVYTLQMRCIRSSLPGFWSP 202
Score = 35.6 bits (81), Expect = 0.002
Identities = 18/102 (17%), Positives = 35/102 (34%), Gaps = 10/102 (9%)
Query: 25 MPSLPPENIAC-SSVTSTTLKITWETVPNEARNGIIQGYKVVYYP--AEDWYESLES--- 78
P P N++C +T+ +L WE P + + + + A+ Y+
Sbjct: 3 YPPASPSNLSCLMHLTTNSLVCQWEPGPE---THLPTSFILKSFRSRADCQYQGDTIPDC 59
Query: 79 -DTKDTSSLSASLQGLGKFTNYSIQVMAFTQAGDGTLSDVIF 119
K ++ S + L + +I V A G +
Sbjct: 60 VAKKRQNNCSIPRKNLLLYQYMAIWVQAENMLGSSESPKLCL 101
>1v5j_A KIAA1355 protein, RSGI RUH-008; FN3 domain, human cDNA, structural
genomics, riken structural genomics/proteomics
initiative, cell adhesion; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 108
Score = 41.8 bits (98), Expect = 4e-06
Identities = 18/93 (19%), Positives = 34/93 (36%), Gaps = 4/93 (4%)
Query: 26 PSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYESLESDTKDTSS 85
PP + + T + + W+ P E + GY + +E L+ T +
Sbjct: 7 GLSPPRGLV-AVRTPRGVLLHWD--PPELVPKRLDGYVLEGRQGSQGWEVLDPAVAGTET 63
Query: 86 LSASLQGLGKFTNYSIQVMAFTQAGDGTLSDVI 118
+ GL K Y +++AF + S+
Sbjct: 64 -ELLVPGLIKDVLYEFRLVAFAGSFVSDPSNTA 95
>2b5i_B Interleukin-2 receptor beta chain; four-helix bundle, fibronectin
domain, cytokine-cytokine REC complex; HET: NAG; 2.30A
{Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3qaz_B*
2erj_B*
Length = 214
Score = 42.9 bits (100), Expect = 4e-06
Identities = 14/85 (16%), Positives = 24/85 (28%)
Query: 28 LPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYESLESDTKDTSSLS 87
+ P ++ V + I+WE ++ +E T
Sbjct: 107 MAPISLQVVHVETHRCNISWEISQASHYFERHLEFEARTLSPGHTWEEAPLLTLKQKQEW 166
Query: 88 ASLQGLGKFTNYSIQVMAFTQAGDG 112
L+ L T Y QV G+
Sbjct: 167 ICLETLTPDTQYEFQVRVKPLQGEF 191
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin
domain, fibronectin type III repeat, CE adhesion; 1.80A
{Homo sapiens}
Length = 215
Score = 42.5 bits (100), Expect = 7e-06
Identities = 18/96 (18%), Positives = 35/96 (36%), Gaps = 4/96 (4%)
Query: 29 PPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPA--EDWYESLESDTKDTSSL 86
P S+T ++ ++ P I YK + E W+ + +
Sbjct: 116 SPSIDQ-VEPYSSTAQVQFDE-PEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEG 173
Query: 87 SASLQGLGKFTNYSIQVMAFTQAGDGTLSDVIFCRT 122
++ GL T Y++++ A G G +S +T
Sbjct: 174 IVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKT 209
>1bpv_A Titin, A71, connectin; fibronectin type III; NMR {Homo sapiens}
SCOP: b.1.2.1
Length = 112
Score = 41.2 bits (97), Expect = 7e-06
Identities = 26/104 (25%), Positives = 39/104 (37%), Gaps = 10/104 (9%)
Query: 24 SMPSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYY--PAEDWYESLESDTK 81
S P PP ++T T+ + W P I Y V P W ++ S+
Sbjct: 8 SSPIDPPGKPVPLNITRHTVTLKW-AKPEYTGGFKITSYIVEKRDLPNGRWLKANFSNIL 66
Query: 82 DTSSLSASLQGLGKFTNYSIQVMAFTQAGDG----TLSDVIFCR 121
+ ++ GL + Y +V+A AG SD I CR
Sbjct: 67 EN---EFTVSGLTEDAAYEFRVIAKNAAGAISPPSEPSDAITCR 107
>1iar_B Protein (interleukin-4 receptor alpha chain); cytokine
receptor,interleukin-4, cytokine/receptor complex; 2.30A
{Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3bpl_B*
3bpn_B* 3bpo_B*
Length = 207
Score = 42.3 bits (99), Expect = 8e-06
Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 2/90 (2%)
Query: 29 PPENIACSSVTSTTLKITWET-VPNEARNGIIQGYKVVYYPAED-WYESLESDTKDTSSL 86
P N+ + S TL +TW P + Y V + D + + T SL
Sbjct: 100 APGNLTVHTNVSDTLLLTWSNPYPPDNYLYNHLTYAVNIWSENDPADFRIYNVTYLEPSL 159
Query: 87 SASLQGLGKFTNYSIQVMAFTQAGDGTLSD 116
+ L +Y +V A+ QA + T S+
Sbjct: 160 RIAASTLKSGISYRARVRAWAQAYNTTWSE 189
>1wis_A KIAA1514 protein; FNIII domain, sidekick-2, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 124
Score = 40.8 bits (96), Expect = 9e-06
Identities = 19/103 (18%), Positives = 37/103 (35%), Gaps = 9/103 (8%)
Query: 29 PPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYY-----PAEDWYESLESDTKDT 83
PP N+ S++ ++ + + P I + V E+W + + +
Sbjct: 20 PPTNLGISNIGPRSVTLQFR--PGYDGKTSISRWLVEAQVGVVGEGEEW-LLIHQLSNEP 76
Query: 84 SSLSASLQGLGKFTNYSIQVMAFTQAGDGTLSDV-IFCRTLED 125
+ S + L FT YS ++ G S +TL+
Sbjct: 77 DARSMEVPDLNPFTCYSFRMRQVNIVGTSPPSQPSRKIQTLQS 119
>2dmk_A Midline 2 isoform 2; midline defect 2, tripartite motif protein 1,
midin-2, ring finger protein 60, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 127
Score = 40.7 bits (95), Expect = 1e-05
Identities = 16/92 (17%), Positives = 30/92 (32%), Gaps = 4/92 (4%)
Query: 23 ISMPSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYESLESD--- 79
++ P+ P + + T+ + W + + + Y + A D
Sbjct: 13 LTAPNPPSIREELCTASHDTITVHWISDDEFSISSYELQYTIFTGQANFISLYNSVDSWM 72
Query: 80 -TKDTSSLSASLQGLGKFTNYSIQVMAFTQAG 110
+ ++ GL T Y V A QAG
Sbjct: 73 IVPNIKQNHYTVHGLQSGTRYIFIVKAINQAG 104
>3lb6_C IL-13, interleukin-13 receptor subunit alpha-2; cytokine, decoy,
decoy receptor, glycoprotein; HET: MLY NAG; 3.05A {Homo
sapiens} PDB: 3lb6_D*
Length = 380
Score = 41.7 bits (97), Expect = 2e-05
Identities = 10/79 (12%), Positives = 24/79 (30%), Gaps = 6/79 (7%)
Query: 25 MPSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYESLESDTKDTS 84
+ LPP + + +S +K+ W Y++ + T
Sbjct: 236 VKPLPPVYLTFTRESSCEIKLKWSIPLGPIPARCFD-YEIEIREDDTTLV-----TATVE 289
Query: 85 SLSASLQGLGKFTNYSIQV 103
+ + +L+ + V
Sbjct: 290 NETYTLKTTNETRQLCFVV 308
Score = 41.3 bits (96), Expect = 2e-05
Identities = 12/115 (10%), Positives = 31/115 (26%), Gaps = 7/115 (6%)
Query: 12 STIVTILTMYNISMPSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYY--PA 69
S T + +P +++ C L +W+ + Y + Y+
Sbjct: 122 SWAETTYWISPQGIPETXVQDMDCVYYNWQYLLCSWKPGIG---VLLDTNYNLFYWYEGL 178
Query: 70 EDWYESLE--SDTKDTSSLSASLQGLGKFTNYSIQVMAFTQAGDGTLSDVIFCRT 122
+ + ++ + ++ I V ++ S F
Sbjct: 179 DHALQCVDYIKADGQNIGCRFPYLEASDYKDFYICVNGSSENKPIRSSYFTFQLQ 233
Score = 34.4 bits (78), Expect = 0.005
Identities = 14/92 (15%), Positives = 27/92 (29%), Gaps = 7/92 (7%)
Query: 25 MPSLPPENIACSSVTST-TLKITWET-VPNEARNGIIQGYKVVYYPAEDWYESLESDTKD 82
+ PP++ L + W+ + + Y++ Y T
Sbjct: 30 IKVNPPQDFEIVDPGYLGYLYLQWQPPLSLDHFKECTVEYELKYRNIGSE----TWKTII 85
Query: 83 TSSLSASLQ-GLGKFTNYSIQVMAFTQAGDGT 113
T +L L K I + Q +G+
Sbjct: 86 TKNLHYKDGFDLNKGIEAXIHTLLPWQCTNGS 117
>4doh_R Interleukin-20 receptor subunit alpha; IL10 family cytokine
receptor complex, alpha helical cytokin beta sandwhich
receptor fold, signaling complex; HET: NAG; 2.80A {Homo
sapiens}
Length = 221
Score = 41.4 bits (96), Expect = 2e-05
Identities = 20/108 (18%), Positives = 35/108 (32%), Gaps = 7/108 (6%)
Query: 25 MPSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYESLESDTKDTS 84
PPE + S ++ +T + + +Y + L + + T
Sbjct: 107 TQIGPPEVALTTDEKSISVVLTAPEKWKRNPEDLPVSMQQIYSNLKYNVSVLNTKSNRTW 166
Query: 85 SL-----SASLQGLGKFTNYSIQVMAFTQAGD--GTLSDVIFCRTLED 125
S + L L T Y + V +F S+ RTL+D
Sbjct: 167 SQCVTNHTLVLTWLEPNTLYCVHVESFVPGPPRRAQPSEKQCARTLKD 214
Score = 34.1 bits (77), Expect = 0.007
Identities = 19/85 (22%), Positives = 26/85 (30%), Gaps = 7/85 (8%)
Query: 29 PPENIACSSV-TSTTLKITWETVPNEARNGIIQGYKVVY--YPAEDWYESLESDTKDTSS 85
P NI S+ L W P E G+ Y V Y Y + W E + +
Sbjct: 11 KPANITFLSINMKNVL--QWT--PPEGLQGVKVTYTVQYFIYGQKKWLNKSECRNINRTY 66
Query: 86 LSASLQGLGKFTNYSIQVMAFTQAG 110
S + Y +V A
Sbjct: 67 CDLSAETSDYEHQYYARVRAIWGTK 91
>1wf5_A Sidekick 2 protein; FNIII domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 121
Score = 40.0 bits (94), Expect = 2e-05
Identities = 18/91 (19%), Positives = 33/91 (36%), Gaps = 5/91 (5%)
Query: 29 PPEN--IACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYESLESDTKDTSSL 86
PE+ S+V + +TW N + Y + + L + D +
Sbjct: 20 APEHPVATLSTVERRAINLTWT--KPFDGNSPLIRYILEMSENNAPWTVLLASV-DPKAT 76
Query: 87 SASLQGLGKFTNYSIQVMAFTQAGDGTLSDV 117
S +++GL +Y ++ A G G S
Sbjct: 77 SVTVKGLVPARSYQFRLCAVNDVGKGQFSKD 107
>2gys_A Cytokine receptor common beta chain; dimer of interlocking chains
of fibronectin-III domains, FOU fibronectin-III domains
PER chain; HET: NAG FUC BMA NDG; 2.70A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1gh7_A*
3cxe_A* 1egj_A* 1c8p_A
Length = 419
Score = 41.1 bits (95), Expect = 3e-05
Identities = 18/95 (18%), Positives = 35/95 (36%), Gaps = 6/95 (6%)
Query: 9 EPQSTIVTILTMYNISMPSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYP 68
+P+ I + NI PP + + + WET I +++ Y
Sbjct: 306 QPRRAEKHIKSSVNI--QMAPPSL--QVTKDGDSYSLRWET-MKMRYEHIDHTFEIQYRK 360
Query: 69 AEDWYESLESDTKDTSSLSASLQGLGKFTNYSIQV 103
++ +++T + S +L L T Y +V
Sbjct: 361 DTATWKDSKTETLQNAH-SMALPALEPSTRYWARV 394
Score = 40.8 bits (94), Expect = 4e-05
Identities = 15/88 (17%), Positives = 29/88 (32%), Gaps = 5/88 (5%)
Query: 29 PPENIACSSVTSTTLKITWETVPNEAR----NGIIQGYKVVYYPAEDWYESLESDTKDTS 84
P ++ S +TW + + ++VVY +D +E +TS
Sbjct: 111 EPRDLQ-ISTDQDHFLLTWSVALGSPQSHWLSPGDLEFEVVYKRLQDSWEDAAILLSNTS 169
Query: 85 SLSASLQGLGKFTNYSIQVMAFTQAGDG 112
+ + L + Y +V G
Sbjct: 170 QATLGPEHLMPSSTYVARVRTRLAPGSR 197
Score = 25.0 bits (53), Expect = 9.3
Identities = 13/90 (14%), Positives = 28/90 (31%), Gaps = 3/90 (3%)
Query: 26 PSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYESLESDTKDTSS 85
++P + + C + ++ + W + ++ ++ ED E + D D
Sbjct: 2 ETIPLQTLRCYNDYTSHITCRWA--DTQDAQRLVN-VTLIRRVNEDLLEPVSCDLSDDMP 58
Query: 86 LSASLQGLGKFTNYSIQVMAFTQAGDGTLS 115
SA I +F S
Sbjct: 59 WSACPHPRCVPRRCVIPCQSFVVTDVDYFS 88
>3bpo_C Interleukin-13 receptor alpha-1 chain; IL4, IL13, IL4R, IL13R,
cytokine, glycoprotein, IM response, membrane,
phosphoprotein, secreted; HET: NAG; 3.00A {Homo sapiens}
PDB: 3bpn_C*
Length = 314
Score = 39.5 bits (91), Expect = 8e-05
Identities = 21/119 (17%), Positives = 34/119 (28%), Gaps = 8/119 (6%)
Query: 9 EPQSTIVTILTMYNISMPSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYY- 67
E S +V P + C + +K +W N Y + Y+
Sbjct: 80 EKPSILVEKCISPPEGDPESAVTELQCIWHNLSYMKCSWLPGRN---TSPDTNYTLYYWH 136
Query: 68 -PAEDWYE---SLESDTKDTSSLSASLQGLGKFTNYSIQVMAFTQAGDGTLSDVIFCRT 122
E ++ S + F +S+Q+M AG S I T
Sbjct: 137 RSLEKIHQCENIFREGQYFGCSFDLTKVKDSSFEQHSVQIMVKDNAGKIKPSFNIVPLT 195
Score = 34.1 bits (77), Expect = 0.006
Identities = 12/84 (14%), Positives = 25/84 (29%), Gaps = 8/84 (9%)
Query: 29 PPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYESLESDTKDTSSLSA 88
P N++ S T+ TW + N + Y + +D + E+ L+
Sbjct: 6 PVTNLSVSVENLCTVIWTWNPPEGASSNCSL-WYFSHFGDKQDKKIAPETRRSIEVPLN- 63
Query: 89 SLQGLGKFTNYSIQVMAFTQAGDG 112
+ + T +
Sbjct: 64 ------ERICLQVGSQCSTNESEK 81
Score = 31.8 bits (71), Expect = 0.035
Identities = 12/103 (11%), Positives = 28/103 (27%), Gaps = 18/103 (17%)
Query: 29 PPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAED-WYESLESDTKD----- 82
PP S + L + WE + Y+V ++ +
Sbjct: 202 PPHIKNLS-FHNDDLYVQWE--NPQNFISRCLFYEVEVNNSQTETHNVFYVQEAKCENPE 258
Query: 83 -----TSSLSASLQGLGKFTNYSIQV----MAFTQAGDGTLSD 116
++ + G+ T ++++ D S+
Sbjct: 259 FERNVENTSCFMVPGVLPDTLNTVRIRVKTNKLCYEDDKLWSN 301
>2w1n_A O-GLCNACASE NAGJ; hexosaminidase, glycoside hydrolase, fibronectin
type-III, beta-N-acetylglucosaminidase, cohesin,
hydrolase; 1.80A {Clostridium perfringens}
Length = 238
Score = 39.1 bits (90), Expect = 9e-05
Identities = 16/120 (13%), Positives = 40/120 (33%), Gaps = 10/120 (8%)
Query: 3 NWLARPEPQSTIVTILTMYNISMPSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGY 62
+ V I+ + + P + S + + +TW ++GY
Sbjct: 127 GLVHEIAGTEKTVNIIEGTSPEIVVNPVRDFKASEINKKNVTVTWTEP---ETTEGLEGY 183
Query: 63 KVVYYPAEDWYESLESDTKDTSSLSASLQGLGKFTNYSIQVMAFTQAGDGTLSDVIFCRT 122
+ + + + S + + L + T Y+ ++ A G+ + + + RT
Sbjct: 184 IL-------YKDGKKVAEIGKDETSYTFKKLNRHTIYNFKIAAKYSNGEVSSKESLTLRT 236
>3lqm_A Interleukin-10 receptor subunit beta; IL-10R2, common chain,
cytokine, IL-10, IL-22, IL- 28, IL-29, disulfide bond,
glycoprotein, membrane; 2.14A {Homo sapiens}
Length = 201
Score = 38.9 bits (90), Expect = 1e-04
Identities = 18/101 (17%), Positives = 34/101 (33%), Gaps = 4/101 (3%)
Query: 29 PPENIACSSVTSTTLKITWETVPNEARNGIIQG-YKVVYYPAEDWYESLESDTK-DTSSL 86
PP ++ + NE ++ Y Y + W + + +
Sbjct: 96 PPGMQVEVLADCLHMRFLAPKIENEYETWTMKNVYNSWTYNVQYWKQGTDEKFQITPQYD 155
Query: 87 SASLQGLGKFTNYSIQVMAFTQAGD--GTLSDVIFCRTLED 125
L+ L +T Y +QV F + G S+ + +T D
Sbjct: 156 FEVLRNLEPWTTYCVQVRGFLPDRNKAGEWSEPVCEQTTHD 196
Score = 37.8 bits (87), Expect = 3e-04
Identities = 16/97 (16%), Positives = 32/97 (32%), Gaps = 8/97 (8%)
Query: 29 PPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYESLESDTKDTSSLSA 88
PPEN+ +SV + + WE+ + Y Y + T+
Sbjct: 4 PPENVRMNSVNFKNI-LQWESPAFAKGQ---LTFTAQYL----SYRIFQDKCMQTTLTEC 55
Query: 89 SLQGLGKFTNYSIQVMAFTQAGDGTLSDVIFCRTLED 125
L K+ +++++V A + F +
Sbjct: 56 DFSSLSKYGDHTLRVRAEFADEHSDWVQITFSPVDDT 92
>3n06_B PRL-R, prolactin receptor; PH dependence, hematopoietic cytokine,
hormone-hormone recep complex; 2.00A {Homo sapiens} PDB:
3mzg_B 3n0p_B 3ncb_B 1bp3_B 3d48_R 3nce_B 3ncc_B 3ncf_B
3ew3_B 3npz_B 1f6f_B 2lfg_A
Length = 210
Score = 38.9 bits (90), Expect = 1e-04
Identities = 17/126 (13%), Positives = 31/126 (24%), Gaps = 6/126 (4%)
Query: 3 NWLARPEPQSTIVTILTMYNISMPSLPPENIACSSVTSTTLKITWET--VPNEARNGIIQ 60
N + V + + P + L I W + +
Sbjct: 83 NQMGSSFSDELYVDVTYIVQPDPPLELAVEVKQPEDRKPYLWIKWSPPTLIDLKTGWFTL 142
Query: 61 GYKVVYYPAEDWYESLESDTKDTSSLSASLQGLGKFTNYSIQVMAFTQAGD-GTLSDVIF 119
Y++ P + + + T + L Y +QV G S F
Sbjct: 143 LYEIRLKPEKAAEWEIHFAGQQTE---FKILSLHPGQKYLVQVRCKPDHGYWSAWSPATF 199
Query: 120 CRTLED 125
+ D
Sbjct: 200 IQIPSD 205
Score = 36.6 bits (84), Expect = 8e-04
Identities = 19/97 (19%), Positives = 30/97 (30%), Gaps = 5/97 (5%)
Query: 25 MPSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVY--YPAEDWYESLESDTKD 82
+P PE C S T W + G+ Y + Y +E + T
Sbjct: 2 LPPGKPEIFKCRSPNKETFTCWWRPGTD---GGLPTNYSLTYHREGETLMHECPDYITGG 58
Query: 83 TSSLSASLQGLGKFTNYSIQVMAFTQAGDGTLSDVIF 119
+S Q + Y + V A Q G ++
Sbjct: 59 PNSCHFGKQYTSMWRTYIMMVNATNQMGSSFSDELYV 95
>3qt2_A Interleukin-5 receptor subunit alpha; cytokine type I receptor
fold, fibronectin type III modules, helical bundle,
cytokine, ligand-receptor complex; HET: BGC; 2.55A
{Homo sapiens}
Length = 317
Score = 38.7 bits (89), Expect = 2e-04
Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 26 PSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYY-PAEDWYESLESDTKDTS 84
LPP N + + W+ P++ + + Y+V P ED YE+ +++K +
Sbjct: 11 SLLPPVNFTIKVTGLAQVLLQWKPNPDQEQRNVNLEYQVKINAPKEDDYETRITESKAVT 70
Query: 85 SL 86
L
Sbjct: 71 IL 72
>1eer_B Epobp, erythropoietin receptor; signal transduction, hematopoietic
cytokine, cytokine receptor class 1, complex
(cytokine/receptor); 1.90A {Homo sapiens} SCOP: b.1.2.1
b.1.2.1 PDB: 1cn4_A 2jix_B 1eba_A* 1ern_A 1ebp_A
Length = 227
Score = 38.5 bits (89), Expect = 2e-04
Identities = 13/100 (13%), Positives = 30/100 (30%), Gaps = 2/100 (2%)
Query: 4 WLARPEPQSTIVTILTMYNISMPSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYK 63
+ ++ + + + P +A + S + + W P I+ Y+
Sbjct: 100 RVTAASGAPRYHRVIHINEVVLLDAPVGLVARLADESGHVVLRWLPPPETPMTSHIR-YE 158
Query: 64 VVYYPAEDWYESLESDTKDTSSLSASLQGLGKFTNYSIQV 103
V + + + + L L T Y+ V
Sbjct: 159 VDVSAGQGAGSVQRVEILEGRT-ECVLSNLRGRTRYTFAV 197
Score = 38.5 bits (89), Expect = 2e-04
Identities = 13/99 (13%), Positives = 27/99 (27%), Gaps = 8/99 (8%)
Query: 23 ISMPSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAED------WYESL 76
+ + PE + C + L WE + Y Y ++ +++
Sbjct: 17 ALLAARGPEELLCFTERLEDLVCFWE--EAASAGVGPGQYSFSYQLEDEPWKLCRLHQAP 74
Query: 77 ESDTKDTSSLSASLQGLGKFTNYSIQVMAFTQAGDGTLS 115
+ S F ++V A + A
Sbjct: 75 TARGAVRFWCSLPTADTSSFVPLELRVTAASGAPRYHRV 113
>2erj_C Cytokine receptor common gamma chain; immune system-cytok complex;
HET: NAG FUC BMA; 3.00A {Homo sapiens} SCOP: b.1.2.1
b.1.2.1
Length = 247
Score = 38.6 bits (89), Expect = 2e-04
Identities = 19/118 (16%), Positives = 38/118 (32%), Gaps = 11/118 (9%)
Query: 2 LNWLARPEPQSTIVTILTMYNISMPSLPPENIACSSVTSTTLKITWETVPNEARNGIIQG 61
+ EP+ +L + N+ +P PEN+ ++ + L++ W
Sbjct: 113 VQLQDPREPRRQATQMLKLQNLVIPW-APENLTLHKLSESQLELNWNN----RFLNHCLE 167
Query: 62 YKVVYYPAEDWYESLESDTKDTSSLSASLQGLGKFTNYSIQV---MAFTQAGDGTLSD 116
+ V Y D + +S SL + Y+ +V S+
Sbjct: 168 HLVQYRTDWDHSWTEQSVDYRH---KFSLPSVDGQKRYTFRVRSRFNPLCGSAQHWSE 222
Score = 34.0 bits (77), Expect = 0.006
Identities = 11/112 (9%), Positives = 29/112 (25%)
Query: 11 QSTIVTILTMYNISMPSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAE 70
+T + ++S+ +LP + C + TW++ + Y +
Sbjct: 21 ADFFLTTMPTDSLSVSTLPLPEVQCFVFNVEYMNCTWQSSSEPQPTNLTLHYWYKNSDND 80
Query: 71 DWYESLESDTKDTSSLSASLQGLGKFTNYSIQVMAFTQAGDGTLSDVIFCRT 122
+ + + LQ + V + +
Sbjct: 81 KVQKCSHYLFSEEITSGCQLQKKEIHLYQTFVVQLQDPREPRRQATQMLKLQ 132
>2crz_A Fibronectin type-III domain containing protein 3A; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 110
Score = 36.9 bits (86), Expect = 2e-04
Identities = 20/94 (21%), Positives = 31/94 (32%), Gaps = 10/94 (10%)
Query: 26 PSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAED--WYESLESDTKDT 83
P LPP + +++ W P I Y V P E E
Sbjct: 11 PCLPPR--LQGRPKAKEIQLRW-GPPLVDGGSPISCYSVEMSPIEKDEPRE-----VYQG 62
Query: 84 SSLSASLQGLGKFTNYSIQVMAFTQAGDGTLSDV 117
S + ++ L YS ++ A + G G S+
Sbjct: 63 SEVECTVSSLLPGKTYSFRLRAANKMGFGPFSEK 96
>4doh_B Interleukin-20 receptor subunit beta; IL10 family cytokine receptor
complex, alpha helical cytokin beta sandwhich receptor
fold, signaling complex; HET: NAG; 2.80A {Homo sapiens}
Length = 206
Score = 37.4 bits (86), Expect = 4e-04
Identities = 15/116 (12%), Positives = 31/116 (26%), Gaps = 10/116 (8%)
Query: 12 STIVTILTMYNISMPSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAED 71
S + +N L + + L I E + + + V Y+ E
Sbjct: 94 SAWSILKHPFNRQSTILTRPGMEITK-DGFHLVIELEDLGPQF------EFLVAYWRREP 146
Query: 72 WYESLESDTKDTSSLSASLQGLGKFTNYSIQVMAFTQAGD--GTLSDVIFCRTLED 125
E + + L+ + Y ++ F +A S +
Sbjct: 147 GAEE-HVKMVRSGGIPVHLETMEPGAAYCVKAQTFVKAIGRYSAFSQTECVEVQGE 201
>1uc6_A CNTF receptor, ciliary neurotrophic factor receptor alpha;
cytokine, leukemia inhibitory factor, cytokine receptor;
NMR {Homo sapiens} SCOP: b.1.2.1
Length = 109
Score = 36.1 bits (83), Expect = 5e-04
Identities = 18/82 (21%), Positives = 29/82 (35%), Gaps = 10/82 (12%)
Query: 29 PPENIACSSVT--STTLKITWET-VPNEARNGIIQGYKVVYYP--AEDWYESLESDTKDT 83
PPEN+ V L++TW+T + + Y P + W S+
Sbjct: 10 PPENVVARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRPLILDQWQHVELSNGT-- 67
Query: 84 SSLSASLQGLGKFTNYSIQVMA 105
+ ++ Y IQV A
Sbjct: 68 ---AHTITDAYAGKEYIIQVAA 86
>2b5i_C Cytokine receptor common gamma chain; four-helix bundle,
fibronectin domain, cytokine-cytokine REC complex; HET:
NAG; 2.30A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB:
3bpl_C* 3qb7_C* 3qaz_C*
Length = 199
Score = 37.0 bits (85), Expect = 6e-04
Identities = 19/114 (16%), Positives = 37/114 (32%), Gaps = 11/114 (9%)
Query: 6 ARPEPQSTIVTILTMYNISMPSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVV 65
EP+ +L + N+ +P PEN+ ++ + L++ W + V
Sbjct: 79 DPREPRRQATQMLKLQNLVIPW-APENLTLHKLSESQLELNWNN----RFLNHCLEHLVQ 133
Query: 66 YYPAEDWYESLESDTKDTSSLSASLQGLGKFTNYSIQV---MAFTQAGDGTLSD 116
Y D + +S SL + Y+ +V S+
Sbjct: 134 YRTDWDHSWTEQSVDYRH---KFSLPSVDGQKRYTFRVRSRFNPLCGSAQHWSE 184
Score = 24.7 bits (53), Expect = 9.5
Identities = 8/94 (8%), Positives = 20/94 (21%)
Query: 29 PPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYESLESDTKDTSSLSA 88
P + C + TW++ + Y + + + +
Sbjct: 1 PLPEVQCFVFNVEYMNCTWQSSSEPQPTNLTLHYWYKNSDNDKVQKCSHYLFSEEITSGC 60
Query: 89 SLQGLGKFTNYSIQVMAFTQAGDGTLSDVIFCRT 122
LQ + V + +
Sbjct: 61 QLQKKEIHLYQTFVVQLQDPREPRRQATQMLKLQ 94
>3s98_A Interferon alpha/beta receptor 1; human, type I interferons,
receptor chain, ifnar1, fibronect III, type I interferon
receptor chain; HET: NAG; 1.90A {Homo sapiens}
Length = 306
Score = 36.0 bits (82), Expect = 0.002
Identities = 15/91 (16%), Positives = 28/91 (30%), Gaps = 6/91 (6%)
Query: 25 MPSLPPENIACSSVTSTTLKITWETV--PNEARNGIIQGYKVVYYPAEDWYESLESDTKD 82
PPE + + + I+ T A +G+ Y +V + E + +
Sbjct: 100 AQIGPPEVHLEAEDKAIVIHISPGTKDSVMWALDGLSFTYSLVIWKNSSGVE----ERIE 155
Query: 83 TSSLSASLQGLGKFTNYSIQVMAFTQAGDGT 113
+ L T Y ++V A
Sbjct: 156 NIYSRHKIYKLSPETTYCLKVKAALLTSWKI 186
Score = 34.5 bits (78), Expect = 0.004
Identities = 15/101 (14%), Positives = 31/101 (30%), Gaps = 7/101 (6%)
Query: 20 MYNISMPSLPPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVY---YPAEDWYESL 76
+ LPP SV + + W+ +Q + + P Y+
Sbjct: 195 IKTTVENELPPPENIEVSVQNQNYVLKWD-YTYANMTFQVQ-WLHAFLKRNPGNHLYKWK 252
Query: 77 E-SDTKDTSSLSASL-QGLGKFTNYSIQVMAFTQAGDGTLS 115
+ D ++ + Q + + Y ++V A S
Sbjct: 253 QIPDCENVKTTQCVFPQNVFQKGIYLLRVQASDGNNTSFWS 293
>2dle_A Receptor-type tyrosine-protein phosphatase ETA; protein-tyrosine
phosphatase ETA, R-PTP-ETA, HPTP ETA, protein-tyrosine
phosphatase receptor type J; NMR {Homo sapiens}
Length = 104
Score = 33.9 bits (77), Expect = 0.003
Identities = 17/85 (20%), Positives = 32/85 (37%), Gaps = 8/85 (9%)
Query: 29 PPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYESLESDTKDTSSLSA 88
++ ++++T+L + W+ NE+ Y +S + S A
Sbjct: 10 QVFDVTAVNISATSLTLIWKVSDNES------SSNYTYKI--HVAGETDSSNLNVSEPRA 61
Query: 89 SLQGLGKFTNYSIQVMAFTQAGDGT 113
+ GL T Y+I V +GT
Sbjct: 62 VIPGLRSSTFYNITVCPVLGDIEGT 86
>3tgx_A Interleukin-21 receptor; class I cytokine, class I cytokine
receptor, sugarbridge, fibronectine domain, signaling,
cytokine-cytokine receptor; HET: MAN FUL NAG BMA FUC;
2.80A {Homo sapiens}
Length = 219
Score = 34.0 bits (77), Expect = 0.007
Identities = 16/81 (19%), Positives = 34/81 (41%), Gaps = 8/81 (9%)
Query: 29 PPENIACSSVTSTTLKITWETVPNEARNGIIQG---YKVVYYPAEDWYESLESDTK---D 82
PP ++ + S +I+W + + +++G Y++ Y D + D
Sbjct: 103 PPFDV--TVTFSGQYQISWRSDYEDPAFYMLKGKLQYELQYRNRGDPWAVSPRRKLISVD 160
Query: 83 TSSLSASLQGLGKFTNYSIQV 103
+ S+S K ++Y +QV
Sbjct: 161 SRSVSLLPLEFRKDSSYELQV 181
>1axi_B HGHBP, growth hormone receptor; complex (hormone-receptor), complex
(hormone-receptor) compl; 2.10A {Homo sapiens} SCOP:
b.1.2.1 b.1.2.1 PDB: 1a22_B 1kf9_B 1hwg_B 1hwh_B 3hhr_B
2aew_A
Length = 236
Score = 34.0 bits (77), Expect = 0.007
Identities = 16/91 (17%), Positives = 26/91 (28%), Gaps = 5/91 (5%)
Query: 26 PSLPPENIACSSVTSTTLKITWE--TVPNEARNGIIQGYKVVYYPAE---DWYESLESDT 80
S P+ C S T W G IQ + E +W E + +
Sbjct: 29 SSGEPKFTKCRSPERETFSCHWTDEVHHGTKNEGPIQLFYTRRNTQEWTQEWKECPDYVS 88
Query: 81 KDTSSLSASLQGLGKFTNYSIQVMAFTQAGD 111
+S + Y I++ + D
Sbjct: 89 AGENSCYFNSSFTSIAIPYCIKLTSNGGTVD 119
Score = 28.6 bits (63), Expect = 0.52
Identities = 9/70 (12%), Positives = 24/70 (34%), Gaps = 5/70 (7%)
Query: 36 SSVTSTTLKITWE--TVPNEARNGIIQGYKVVYYPAEDWYESLESDTKDTSSLSASLQGL 93
+ +++ WE + + ++ Y++ Y + + TS + L
Sbjct: 146 LTGIHADIQVRWEAPRNADIQKGWMVLEYELQYKEVNETKWKMMDPILTTS---VPVYSL 202
Query: 94 GKFTNYSIQV 103
Y ++V
Sbjct: 203 KVDKEYEVRV 212
>3g9v_A Interleukin 22 receptor, alpha 2; cytokine, cytokine receptor,
receptor, glycoprotein, polymorphism, secreted,
cytokine/cytokine receptor complex; 2.76A {Homo sapiens}
Length = 211
Score = 33.2 bits (75), Expect = 0.011
Identities = 14/94 (14%), Positives = 30/94 (31%), Gaps = 5/94 (5%)
Query: 25 MPSLPPENIACSSVTSTTLKITWETVPNEARNGI---IQGYKVVYYPAEDWYESLESDTK 81
PP S + + +P + I+ Y + Y SLE + K
Sbjct: 106 TKIDPPVMNITQVNGSLLVILHAPNLPYRYQKEKNVSIEDYYELLYRVFIINNSLEKEQK 165
Query: 82 --DTSSLSASLQGLGKFTNYSIQVMAFTQAGDGT 113
+ + + ++ L ++Y + + D
Sbjct: 166 VYEGAHRAVEIEALTPHSSYCVVAEIYQPMLDRR 199
>3dlq_R Interleukin-22 receptor subunit alpha-1; cytokine-receptor complex,
fibronectin-III, cytokine, glycoprotein, polymorphism,
secreted, membrane; 1.90A {Homo sapiens} PDB: 3dgc_R*
Length = 211
Score = 33.1 bits (75), Expect = 0.013
Identities = 17/103 (16%), Positives = 27/103 (26%), Gaps = 7/103 (6%)
Query: 29 PPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVY----YPAEDWYESLESDTKDTS 84
PP+ S V S + + P A +G + ++ Y E
Sbjct: 106 PPDVTCISKVRSIQMIVHPTPTPIRAGDGHRLTLEDIFHDLFYHLELQVNRTYQMHLGGK 165
Query: 85 SLSASLQGLGKFTNYSIQVMAFTQAGDGT--LSDVIFCRTLED 125
GL T + +M +TL D
Sbjct: 166 QREYEFFGLTPDTEFLGTIMILVPTWAKESAPYMCR-VKTLPD 207
>3up1_A Interleukin-7 receptor subunit alpha; cytokine receptor,
fibronectin type 3 fold, membrane and SOL glycosylation,
immune system; HET: NAG FUC NGA; 2.15A {Homo sapiens}
PDB: 3di3_B* 3di2_B*
Length = 223
Score = 32.8 bits (74), Expect = 0.016
Identities = 15/98 (15%), Positives = 34/98 (34%), Gaps = 3/98 (3%)
Query: 7 RPEPQSTIVTILTMYNISMPSLPPENIACSSVTST-TLKITWETVPNEARNGIIQGYKVV 65
+ +S + + I P P +++ +T+ T + + + + V
Sbjct: 94 KVGEKSLTCKKIDLTTIVKPE-APFDLSVVYREGANDFVVTFNTSHLQKKYVKVLMHDVA 152
Query: 66 YYPAEDWYESLESDTKDTSSLSASLQGLGKFTNYSIQV 103
Y +D + + T L+ + L Y I+V
Sbjct: 153 YRQEKDENKWTHVNLSSTK-LTLLQRKLQPAAMYEIKV 189
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33;
2.40A {Caenorhabditis elegans} PDB: 1koa_A
Length = 573
Score = 32.9 bits (75), Expect = 0.018
Identities = 11/84 (13%), Positives = 29/84 (34%), Gaps = 8/84 (9%)
Query: 29 PPENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVY--YPAEDWYESLESDTKDTSSL 86
PP ++ + ++W+ + ++ Y + W S +
Sbjct: 12 PPRFPIIENILDEAVILSWKPPALDG-GSLVTNYTIEKREAMGGSW-----SPCAKSRYT 65
Query: 87 SASLQGLGKFTNYSIQVMAFTQAG 110
+++GL Y +++A + G
Sbjct: 66 YTTIEGLRAGKQYEFRIIAENKHG 89
Score = 27.1 bits (60), Expect = 1.7
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 28 LPPENIACSSVTSTTLKIT 46
L PENI ++ S LK+
Sbjct: 281 LKPENIMFTTKRSNELKLI 299
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.9 bits (74), Expect = 0.020
Identities = 22/135 (16%), Positives = 44/135 (32%), Gaps = 35/135 (25%)
Query: 9 EPQSTIVTILTMY-NISMPSLPPENIACS------SVTSTTLKI------TWETVPNEAR 55
+ ++L Y + LP E + S+ + +++ W+ V +
Sbjct: 300 PDEV--KSLLLKYLDCRPQDLPRE--VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL 355
Query: 56 NGIIQGYKVVYYPAE--DWYESL---ESDTKDTSSLSASL----------QGLGKFTNYS 100
II+ V PAE ++ L + L + + + K YS
Sbjct: 356 TTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYS 415
Query: 101 IQVMAFTQAGDGTLS 115
+ Q + T+S
Sbjct: 416 ---LVEKQPKESTIS 427
>1k85_A Chitinase A1; fibronectin type III domain, chitin binding domain,
carbohydrase, horizontal gene transfer, hydrolase; NMR
{Bacillus circulans} SCOP: b.1.2.1
Length = 88
Score = 30.3 bits (69), Expect = 0.048
Identities = 19/81 (23%), Positives = 37/81 (45%), Gaps = 12/81 (14%)
Query: 30 PENIACSSVTSTTLKITWETVPNEARNGIIQGYKVVYYPAEDWYESLESDTKDTSSLSAS 89
P N+A ++ T++++ ++W + N + GY V Y + + +A+
Sbjct: 7 PTNLASTAQTTSSITLSWTASTD---NVGVTGYDV--------YNG-TALATTVTGTTAT 54
Query: 90 LQGLGKFTNYSIQVMAFTQAG 110
+ GL T+Y+ V A AG
Sbjct: 55 ISGLAADTSYTFTVKAKDAAG 75
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.4 bits (68), Expect = 0.13
Identities = 17/60 (28%), Positives = 23/60 (38%), Gaps = 6/60 (10%)
Query: 2 LNWLARPEPQSTIVTILTMYNISMPSLPPENIACSSVTSTTLKITWETVPNEARNGIIQG 61
L WL P L IS P + +A VT+ L T P E R+ ++G
Sbjct: 216 LEWLENPSNTPD-KDYLLSIPISCPLIGVIQLAHYVVTAKLLGFT----PGELRS-YLKG 269
>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB,
immune system/cytokine complex; 1.90A {Homo sapiens}
SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A*
1f42_A* 1f45_A* 3hmx_A* 3qwr_A*
Length = 306
Score = 29.7 bits (65), Expect = 0.20
Identities = 16/108 (14%), Positives = 31/108 (28%), Gaps = 8/108 (7%)
Query: 11 QSTIVTILTMYNISMPSLPPENIACSSVTSTTLKITWETVP--NEARNGIIQGYKVVYYP 68
+ + +I P P S ++++WE + + + V
Sbjct: 198 YEQYTSSFFIRDIIKPDPPKNLQLKPLKNSRQVEVSWEYPDTWSTPHSYFSLTFCVQVQG 257
Query: 69 AEDWYESLESDTKDTSSLSASLQGLGKFTNYSIQVMAFTQAGDGTLSD 116
+ T TS + N SI V A + + S+
Sbjct: 258 KSKREKKDRVFTDKTS------ATVICRKNASISVRAQDRYYSSSWSE 299
>1bx4_A Protein (adenosine kinase); human adenosine kinase, transferase;
HET: ADN; 1.50A {Homo sapiens} SCOP: c.72.1.1 PDB:
2i6a_A* 2i6b_A*
Length = 345
Score = 28.4 bits (64), Expect = 0.55
Identities = 12/46 (26%), Positives = 21/46 (45%)
Query: 69 AEDWYESLESDTKDTSSLSASLQGLGKFTNYSIQVMAFTQAGDGTL 114
A + +TKD ++ Q L K + +++ FTQ D T+
Sbjct: 227 AATFAREQGFETKDIKEIAKKTQALPKMNSKRQRIVIFTQGRDDTI 272
>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia
californica} SCOP: d.144.1.7
Length = 387
Score = 27.0 bits (60), Expect = 1.8
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 28 LPPENIACSSVTSTTLKIT 46
+ PENI C + ++++KI
Sbjct: 175 IKPENIMCETKKASSVKII 193
>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens}
SCOP: d.144.1.7
Length = 321
Score = 26.8 bits (60), Expect = 2.2
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 28 LPPENIACSSVTSTTLKIT 46
+ PENI + S+T+KI
Sbjct: 128 IRPENIIYQTRRSSTIKII 146
>3loo_A Anopheles gambiae adenosine kinase; AP4A, P4-DI(adenosi
tetraphosphate, transferase; HET: B4P; 2.00A {Anopheles
gambiae}
Length = 365
Score = 26.6 bits (59), Expect = 2.4
Identities = 9/46 (19%), Positives = 16/46 (34%)
Query: 69 AEDWYESLESDTKDTSSLSASLQGLGKFTNYSIQVMAFTQAGDGTL 114
A + T+D + + L K +++ TQ D L
Sbjct: 242 AIALAKEFNYGTEDLREIGKRIAALPKENGKRKRIVIITQGSDPVL 287
>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer,
transferase, serine/threonine-protein kinase,
nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}
Length = 373
Score = 26.6 bits (59), Expect = 2.7
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 28 LPPENIACSSVTSTTLKIT 46
L PENI C + + +KI
Sbjct: 213 LKPENILCVNRDAKQIKII 231
>2qry_A Thiamine-binding periplasmic protein; thiamin binding protein, ABC
transporter, transport protein; HET: TPS; 2.25A
{Escherichia coli}
Length = 330
Score = 24.9 bits (54), Expect = 8.6
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 2 LNWLARPEPQSTIVTILTMYNISMPSLPPENIACSSVTSTTLKITWETV 50
L ++ P Q+ I T MY ++ +LP + +TTL+ T V
Sbjct: 266 LQFMVSPAFQNAIPTGNWMYPVANVTLPAG-FEKLTKPATTLEFTPAEV 313
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.129 0.380
Gapped
Lambda K H
0.267 0.0473 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,806,087
Number of extensions: 86220
Number of successful extensions: 555
Number of sequences better than 10.0: 1
Number of HSP's gapped: 365
Number of HSP's successfully gapped: 213
Length of query: 125
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 43
Effective length of database: 4,412,271
Effective search space: 189727653
Effective search space used: 189727653
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (24.0 bits)