BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5697
(145 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VS29|DSCL_DROME Down syndrome cell adhesion molecule-like protein Dscam2
OS=Drosophila melanogaster GN=Dscam2 PE=2 SV=3
Length = 2074
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 38/63 (60%)
Query: 77 WRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVH 136
W ++ + + + +R L NG+L+ PF + DVH+T+YRC ASN G I+SR V
Sbjct: 65 WVHADGSAVTEIHGVRRVLRNGTLVLMPFAAAAYHQDVHNTIYRCIASNSVGRIVSRDVQ 124
Query: 137 VKA 139
V+A
Sbjct: 125 VRA 127
>sp|O60469|DSCAM_HUMAN Down syndrome cell adhesion molecule OS=Homo sapiens GN=DSCAM PE=1
SV=2
Length = 2012
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 35/73 (47%)
Query: 72 PSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL 131
P L W + I V +R NG+L PFP + F +H Y C A N +G I
Sbjct: 53 PVTLRWYLATGEEIYDVPGIRHVHPNGTLQIFPFPPSSFSTLIHDNTYYCTAENPSGKIR 112
Query: 132 SRFVHVKADSRIP 144
S+ VH+KA R P
Sbjct: 113 SQDVHIKAVLREP 125
>sp|Q8VHZ8|DSCAM_RAT Down syndrome cell adhesion molecule homolog OS=Rattus norvegicus
GN=Dscam PE=1 SV=1
Length = 2013
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 35/73 (47%)
Query: 72 PSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL 131
P L W + I V +R NG+L PFP + F +H Y C A N +G I
Sbjct: 53 PVTLRWYLATGEEIYDVPGIRHVHPNGTLQIFPFPPSSFSTLIHDNTYYCTAENPSGKIR 112
Query: 132 SRFVHVKADSRIP 144
S+ VH+KA R P
Sbjct: 113 SQDVHIKAVLREP 125
>sp|Q9ERC8|DSCAM_MOUSE Down syndrome cell adhesion molecule homolog OS=Mus musculus
GN=Dscam PE=1 SV=1
Length = 2013
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 35/73 (47%)
Query: 72 PSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL 131
P L W + I V +R NG+L PFP + F +H Y C A N +G I
Sbjct: 53 PVTLRWYLATGEEIYDVPGIRHVHPNGTLQIFPFPPSSFSTLIHDNTYYCTAENPSGKIR 112
Query: 132 SRFVHVKADSRIP 144
S+ VH+KA R P
Sbjct: 113 SQDVHIKAVLREP 125
>sp|Q8TD84|DSCL1_HUMAN Down syndrome cell adhesion molecule-like protein 1 OS=Homo sapiens
GN=DSCAML1 PE=1 SV=2
Length = 2053
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 32/70 (45%)
Query: 75 LGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRF 134
L W + I V +R +NG+L PF + F +H Y C A N AG I S
Sbjct: 57 LRWYLATGDDIYDVPHIRHVHANGTLQLYPFSPSAFNSFIHDNDYFCTAENAAGKIRSPN 116
Query: 135 VHVKADSRIP 144
+ VKA R P
Sbjct: 117 IRVKAVFREP 126
>sp|Q4VA61|DSCL1_MOUSE Down syndrome cell adhesion molecule-like protein 1 homolog OS=Mus
musculus GN=Dscaml1 PE=1 SV=2
Length = 2053
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 32/70 (45%)
Query: 75 LGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRF 134
L W + I V +R +NG+L PF + F +H Y C A N AG I S
Sbjct: 57 LRWYLATGDDIYDVPHIRHVHANGTLQLFPFSPSAFNSFIHDNDYFCTAENAAGKIRSPN 116
Query: 135 VHVKADSRIP 144
+ +KA R P
Sbjct: 117 IRIKAVFREP 126
>sp|O09049|REG3G_MOUSE Regenerating islet-derived protein 3-gamma OS=Mus musculus GN=Reg3g
PE=2 SV=1
Length = 174
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 8 TLLADADTYIIADRSLFPRPLGYLVGNIVYSSRSENEHYPFRIKSAPGGNRTRGLELTRQ 67
L + + + AD + RP G+LV + S +E IKS+ + + L
Sbjct: 53 ALFSVSKNWYDADMACQKRPSGHLVSVL---SGAEASFLSSMIKSSGNSGQYVWIGLHDP 109
Query: 68 T-RYEPSQLGWRFSNNTVIAYV 88
T YEP++ GW +SN V+ Y+
Sbjct: 110 TLGYEPNRGGWEWSNADVMNYI 131
>sp|Q8AXZ4|CNT1A_DANRE Contactin-1a OS=Danio rerio GN=cntn1a PE=2 SV=1
Length = 1032
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 11/81 (13%)
Query: 62 LELTRQTRYEP-SQLGWRFSN-NTVIAYVKDLRIALSNGSLMFPPFPETGFRPDV--HST 117
+ LT +TR P + WR +N V+A D ++S G+L+ PD H+
Sbjct: 66 ITLTCRTRANPPASYRWRLNNAELVLAEGSDPHYSVSEGNLLIS-------SPDKSKHAG 118
Query: 118 VYRCRASNEAGVILSRFVHVK 138
Y C ASN+ G + SR V+
Sbjct: 119 NYTCVASNQYGSVTSRRARVQ 139
>sp|O42414|NFASC_CHICK Neurofascin OS=Gallus gallus GN=NFASC PE=1 SV=1
Length = 1369
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 109 GFRPDVHSTVYRCRASNEAGVILSRFVHVKADSRIPM 145
G RPD + Y+C A N+ G LS +H++ SR P+
Sbjct: 107 GGRPDDYEGEYQCFARNDYGTALSSKIHLQV-SRSPL 142
>sp|P91885|AMPN_MANSE Aminopeptidase N OS=Manduca sexta GN=APN2 PE=1 SV=2
Length = 942
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 28 LGYLVGNIVYSSRSENEHY--PFRIKSAPGGNRTR--GLELTRQ 67
+ YLV N Y S+N Y PFR+ S PG T LE +Q
Sbjct: 232 IAYLVSNFNYIENSQNPIYPIPFRVYSRPGTQNTAEFALEFGQQ 275
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.138 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,143,938
Number of Sequences: 539616
Number of extensions: 2150699
Number of successful extensions: 3560
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 3540
Number of HSP's gapped (non-prelim): 25
length of query: 145
length of database: 191,569,459
effective HSP length: 106
effective length of query: 39
effective length of database: 134,370,163
effective search space: 5240436357
effective search space used: 5240436357
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)